Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 263 of 284
Found at i:88548714 original size:6 final size:6
Alignment explanation
Indices: 88548703--88548895 Score: 186
Period size: 6 Copynumber: 31.8 Consensus size: 6
88548693 AACCAAAATG
*
88548703 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
88548751 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * *
88548800 AGAATC AGTAA-C AGAATC AGAATC AGAATT AGTATT AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
88548848 AGAATC AGAATC AGAATC AGAATTAC ATG-A-C AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC AGAA-T-C A-GAATC AGAATC AGAATC AGAAT
88548896 GTGAATGCAA
Statistics
Matches: 159, Mismatches: 10, Indels: 36
0.78 0.05 0.18
Matches are distributed among these distances:
4 1 0.01
5 13 0.08
6 130 0.82
7 9 0.06
8 5 0.03
9 1 0.01
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:88548716 original size:30 final size:30
Alignment explanation
Indices: 88548682--88548895 Score: 205
Period size: 30 Copynumber: 7.3 Consensus size: 30
88548672 AAGAAACATT
* *
88548682 ATCAGAATT-GGAACCAAAATGAGAATCAGA
1 ATCAGAATTAGGAA-CAGAATCAGAATCAGA
* *
88548712 ATCAGAATCAGTAACAGAATCAGAATCAGA
1 ATCAGAATTAGGAACAGAATCAGAATCAGA
*
88548742 ATCA-ATATTAGTAACAGAATCAGAATCAGA
1 ATCAGA-ATTAGGAACAGAATCAGAATCAGA
*
88548772 ATCAGAATTAGGTGACAGAATCAGAATCAGA
1 ATCAGAATTAGG-AACAGAATCAGAATCAGA
88548803 ATCAG---T---AACAGAATCAGAATCAGA
1 ATCAGAATTAGGAACAGAATCAGAATCAGA
* * *
88548827 ATTAGTATTAGTAACAGAATCAGAATCAGA
1 ATCAGAATTAGGAACAGAATCAGAATCAGA
* *
88548857 ATCAGAATCAGAATTACATG-A-CAGAATCAGA
1 ATCAGAATTAGGA--ACA-GAATCAGAATCAGA
88548888 ATCAGAAT
1 ATCAGAAT
88548896 GTGAATGCAA
Statistics
Matches: 158, Mismatches: 13, Indels: 25
0.81 0.07 0.13
Matches are distributed among these distances:
24 21 0.13
27 1 0.01
28 1 0.01
29 1 0.01
30 85 0.54
31 44 0.28
32 4 0.03
33 1 0.01
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (30 bp):
ATCAGAATTAGGAACAGAATCAGAATCAGA
Found at i:88548802 original size:85 final size:85
Alignment explanation
Indices: 88548703--88548864 Score: 306
Period size: 85 Copynumber: 1.9 Consensus size: 85
88548693 AACCAAAATG
88548703 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
88548768 CAGAATCAGAATTAGGTGAC
66 CAGAATCAGAATTAGGTGAC
* *
88548788 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATTAGTATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
88548853 CAGAATCAGAAT
66 CAGAATCAGAAT
88548865 CAGAATTACA
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
85 75 1.00
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (85 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
CAGAATCAGAATTAGGTGAC
Found at i:88548882 original size:85 final size:85
Alignment explanation
Indices: 88548703--88548892 Score: 303
Period size: 85 Copynumber: 2.2 Consensus size: 85
88548693 AACCAAAATG
88548703 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
* *
88548768 CAGAATCAGAATTAGGTGAC
66 CAGAATCAGAATCAGATGAC
* *
88548788 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATTAGTATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
*
88548853 CAGAATCAGAATCAGAATTAC
66 CAGAATCAGAATCAG-ATGAC
88548874 ATG-A-CAGAATCAGAATCAG
1 A-GAATCAGAATCAGAATCAG
88548893 AATGTGAATG
Statistics
Matches: 98, Mismatches: 5, Indels: 4
0.92 0.05 0.04
Matches are distributed among these distances:
85 92 0.94
86 5 0.05
87 1 0.01
ACGTcount: A:0.48, C:0.14, G:0.17, T:0.20
Consensus pattern (85 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
CAGAATCAGAATCAGATGAC
Found at i:88549050 original size:27 final size:26
Alignment explanation
Indices: 88549013--88549078 Score: 78
Period size: 27 Copynumber: 2.5 Consensus size: 26
88549003 AGCATGGCTG
*
88549013 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* * *
88549039 CCAGATACAGATATTGTGGCGGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
88549066 CCAGAATCAGATA
1 CCAGAA-CAGATA
88549079 ATGTGGCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
26 6 0.18
27 28 0.82
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:88549093 original size:27 final size:27
Alignment explanation
Indices: 88549037--88549094 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
88549027 GTGACAGAGT
* ** *
88549037 CACCAGATACAGATATTGTGGCGGAGC
1 CACCAGATACAGATAATGTGGCAAACC
88549064 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
88549091 CACC
1 CACC
88549095 TAACAGAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 1 0.04
27 25 0.96
ACGTcount: A:0.34, C:0.28, G:0.22, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:88549299 original size:22 final size:22
Alignment explanation
Indices: 88549251--88549309 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
88549241 GTAAATACGT
*
88549251 TTGGCACGAAGCCATAGTAAAG
1 TTGGCACAAAGCCATAGTAAAG
* * * *
88549273 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTAAAG
*
88549295 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
88549310 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTAAAG
Found at i:88549441 original size:27 final size:28
Alignment explanation
Indices: 88549398--88549478 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 28
88549388 CGATCGGTCA
** *
88549398 ACAGATATTGTAACAGAGTCACCA-AAT
1 ACAGATATTGTGGCAGAGCCACCAGAAT
88549425 ACAGATATTGTGGCAGAGCCACCAGAAT
1 ACAGATATTGTGGCAGAGCCACCAGAAT
*
88549453 --AGATATTTGTGGCATAGCCACCAGAA
1 ACAGATA-TTGTGGCAGAGCCACCAGAA
88549479 CGCTTCCTCC
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
26 5 0.10
27 40 0.83
28 3 0.06
ACGTcount: A:0.38, C:0.20, G:0.21, T:0.21
Consensus pattern (28 bp):
ACAGATATTGTGGCAGAGCCACCAGAAT
Found at i:88549708 original size:27 final size:27
Alignment explanation
Indices: 88549678--88549873 Score: 212
Period size: 27 Copynumber: 7.3 Consensus size: 27
88549668 GGGGCAAAAT
* * *
88549678 GGTAATTTTACCCCACAGGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
88549705 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
88549732 GGTATTTCAACCCCACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*** *
88549759 AAAAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * ** *
88549786 GGTAATTCTATCCTATAAAGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
88549813 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
88549840 GGAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
88549867 AGTAATT
1 GGTAATT
88549874 TCACAATCAA
Statistics
Matches: 137, Mismatches: 32, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 137 1.00
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:88551384 original size:54 final size:54
Alignment explanation
Indices: 88549878--88551364 Score: 2323
Period size: 54 Copynumber: 27.5 Consensus size: 54
88549868 GTAATTTCAC
* *
88549878 AATCAAGGGTAAAACGGTAATTCTGTAAA-TCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTAAACT-GAGGGTAAAACGATAATTCTGTA
* * * *
88549932 AA-CTGAGGGTAAACCAGTAATTCTGTAAA-TCAAGGGTAAAACGATAATTCTCTA
1 AATC-GAGGGTAAAACGGTAATTCTGTAAACT-GAGGGTAAAACGATAATTCTGTA
** * * * *
88549986 AATCGAGGGTAAAATAGTAATTCTATAAACTAAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGATAATTCTGTA
* ** *
88550040 AATTGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGATAATTCTGTA
* * *
88550094 AATCGAGGGTAAAACGGTAATT-T-TACAAATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA-AACT-GAGGGTAAAACGATAATTCTGTA
* * *
88550148 AATCGATGTTAAAACAGTAATTCTGTAAACTGAGGGTAAAAC-AGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGA-TAATTCTGTA
* * * *
88550202 AATCGAGGGTAAACCGGTAATTCTATAAACTGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGATAATTCTGTA
** * * *
88550256 AATCGAGGGTAAAATAGTAATT-T-TACAAATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA-AACT-GAGGGTAAAACGATAATTCTGTA
**
88550310 AATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAAC-AGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGA-TAATTCTGTA
* * * *
88550364 AATCGAGGGTAAACCGGTAATTCTATAAACTGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGATAATTCTGTA
* * *
88550418 AATCGAGGGTAAAACGATAATTTTGTAAACTGAGGGT-AAACCAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGA-TAATTCTGTA
* * * * *
88550472 AATCAAGGGTAAAATGGTAATT-T-TACAAATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA-AACT-GAGGGTAAAACGATAATTCTGTA
**
88550526 AATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGATAATTCTGTA
88550580 AATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGATAATTCTGTA
88550634 AATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGATAATTCTGTA
88550688 AATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGATAATTCTGTA
88550742 AATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGATAATTCTGTA
88550796 AATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGATAATTCTGTA
88550850 AATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGATAATTCTGTA
88550904 AATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGATAATTCTGTA
88550958 AATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGATAATTCTGTA
88551012 AATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGATAATTCTGTA
88551066 AATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGATAATTCTGTA
88551120 AATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGATAATTCTGTA
88551174 AATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGATAATTCTGTA
88551228 AATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGATAATTCTGTA
*
88551282 AATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGATAATTCTGTA
* * *
88551336 AATTGAGGGTAAACCGGTAATTCGGTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTAAA
88551365 TCGGGAGTAC
Statistics
Matches: 1338, Mismatches: 74, Indels: 42
0.92 0.05 0.03
Matches are distributed among these distances:
52 6 0.00
53 16 0.01
54 1292 0.97
55 18 0.01
56 6 0.00
ACGTcount: A:0.39, C:0.11, G:0.23, T:0.27
Consensus pattern (54 bp):
AATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGATAATTCTGTA
Found at i:88553378 original size:6 final size:6
Alignment explanation
Indices: 88553367--88553510 Score: 84
Period size: 6 Copynumber: 23.8 Consensus size: 6
88553357 AACCAAAATG
* * *
88553367 AGAATC AGAATC AGAATC AGTAA-C AAAATC AGAATC GGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* * *
88553415 AGTAA-C AGAATT AG-GTGAC AGAATC AGAATT AGAATC AGTAA-C AGAATC
1 AG-AATC AGAATC AGAAT--C AGAATC AGAATC AGAATC AG-AATC AGAATC
* * * * *
88553464 AGAATC AGAATC AGTATT AGTAA-C AGAATT AGAATG AGAATC GGAAT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAAT
88553511 TACATGACAA
Statistics
Matches: 105, Mismatches: 20, Indels: 26
0.70 0.13 0.17
Matches are distributed among these distances:
5 10 0.10
6 85 0.81
7 8 0.08
8 2 0.02
ACGTcount: A:0.48, C:0.12, G:0.19, T:0.22
Consensus pattern (6 bp):
AGAATC
Found at i:88553451 original size:67 final size:67
Alignment explanation
Indices: 88553367--88553495 Score: 222
Period size: 67 Copynumber: 1.9 Consensus size: 67
88553357 AACCAAAATG
*
88553367 AGAATCAGAATCAGAATCAGTAACAAAATCAGAATCGGAATCAATATTAGTAACAGAATTAGGTG
1 AGAATCAGAATCAGAATCAGTAACAAAATCAGAATCAGAATCAATATTAGTAACAGAATTAGGTG
88553432 AC
66 AC
* * *
88553434 AGAATCAGAATTAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATTAG
1 AGAATCAGAATCAGAATCAGTAACAAAATCAGAATCAGAATCAATATTAGTAACAGAATTAG
88553496 AATGAGAATC
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
67 58 1.00
ACGTcount: A:0.48, C:0.12, G:0.18, T:0.22
Consensus pattern (67 bp):
AGAATCAGAATCAGAATCAGTAACAAAATCAGAATCAGAATCAATATTAGTAACAGAATTAGGTG
AC
Found at i:88553490 original size:24 final size:24
Alignment explanation
Indices: 88553367--88553498 Score: 98
Period size: 24 Copynumber: 5.7 Consensus size: 24
88553357 AACCAAAATG
*
88553367 AGAATCAGAATCAGAATCAGTAAC
1 AGAATCAGAATTAGAATCAGTAAC
* ** * **
88553391 AAAATCAGAATCGGAATCAATATT
1 AGAATCAGAATTAGAATCAGTAAC
*
88553415 AGTAA-CAGAATTAG-----GTGAC
1 AG-AATCAGAATTAGAATCAGTAAC
88553434 AGAATCAGAATTAGAATCAGTAAC
1 AGAATCAGAATTAGAATCAGTAAC
* **
88553458 AGAATCAGAATCAGAATCAGTATT
1 AGAATCAGAATTAGAATCAGTAAC
88553482 AGTAA-CAGAATTAGAAT
1 AG-AATCAGAATTAGAAT
88553499 GAGAATCGGA
Statistics
Matches: 83, Mismatches: 17, Indels: 16
0.72 0.15 0.14
Matches are distributed among these distances:
18 2 0.02
19 12 0.14
24 65 0.78
25 4 0.05
ACGTcount: A:0.48, C:0.12, G:0.17, T:0.22
Consensus pattern (24 bp):
AGAATCAGAATTAGAATCAGTAAC
Found at i:88553504 original size:30 final size:30
Alignment explanation
Indices: 88553433--88553535 Score: 109
Period size: 30 Copynumber: 3.4 Consensus size: 30
88553423 AATTAGGTGA
*
88553433 CAGAATCAGAATTAGAATCAGTAACAGAAT
1 CAGAATCAGAATCAGAATCAGTAACAGAAT
* *
88553463 CAGAATCAGAATCAGTATTAGTAACAGAAT
1 CAGAATCAGAATCAGAATCAGTAACAGAAT
* * * * *
88553493 TAGAATGAGAATCGGAATTACA-TGACAAAAT
1 CAGAATCAGAATCAGAA-T-CAGTAACAGAAT
88553524 CAGAATCAGAAT
1 CAGAATCAGAAT
88553536 GTGAATGCAA
Statistics
Matches: 59, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
30 40 0.68
31 18 0.31
32 1 0.02
ACGTcount: A:0.49, C:0.13, G:0.17, T:0.21
Consensus pattern (30 bp):
CAGAATCAGAATCAGAATCAGTAACAGAAT
Found at i:88553528 original size:67 final size:66
Alignment explanation
Indices: 88553367--88553535 Score: 182
Period size: 67 Copynumber: 2.5 Consensus size: 66
88553357 AACCAAAATG
* * * * * *
88553367 AGAATCAGAATCAGAATCAGTAACAAAATCAGAATCGGAATCAATATTAGTAACAGAATTAGGTG
1 AGAATCAGAATTACAATCAGAAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATTAGATG
88553432 A
66 A
* * *
88553433 CAGAATCAGAATTAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATTAGAA
1 -AGAATCAGAATTACAATCAGAAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATTAG-A
88553498 TG-
64 TGA
*
88553500 AGAATCGGAATTAC-ATGACA-AAATCAGAATCAGAAT
1 AGAATCAGAATTACAAT--CAGAAA-CAGAATCAGAAT
88553536 GTGAATGCAA
Statistics
Matches: 90, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
65 2 0.02
66 14 0.16
67 72 0.80
68 2 0.02
ACGTcount: A:0.49, C:0.12, G:0.18, T:0.21
Consensus pattern (66 bp):
AGAATCAGAATTACAATCAGAAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATTAGATG
A
Found at i:88553691 original size:27 final size:27
Alignment explanation
Indices: 88553653--88553718 Score: 73
Period size: 27 Copynumber: 2.5 Consensus size: 27
88553643 AGCATGGCTG
* * *
88553653 CCAGAAT-AGATATCGTGATAGAGTCA
1 CCAGAATCAGATATAGTGACAGAGCCA
*
88553679 CCAG-ATACAGATATAGTGGCAGAGCCA
1 CCAGAAT-CAGATATAGTGACAGAGCCA
88553706 CCAGAATCAGATA
1 CCAGAATCAGATA
88553719 ATGTGGCAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
25 2 0.06
26 4 0.12
27 25 0.76
28 2 0.06
ACGTcount: A:0.39, C:0.20, G:0.23, T:0.18
Consensus pattern (27 bp):
CCAGAATCAGATATAGTGACAGAGCCA
Found at i:88553724 original size:27 final size:27
Alignment explanation
Indices: 88553672--88553726 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 27
88553662 ATATCGTGAT
*
88553672 AGAGTCACCAGATACAGATATAGTGGC
1 AGAGCCACCAGATACAGATATAGTGGC
88553699 AGAGCCACCAGA-ATCAGATA-ATGTGGC
1 AGAGCCACCAGATA-CAGATATA-GTGGC
88553726 A
1 A
88553727 AACCCACCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
26 2 0.08
27 23 0.92
ACGTcount: A:0.38, C:0.20, G:0.25, T:0.16
Consensus pattern (27 bp):
AGAGCCACCAGATACAGATATAGTGGC
Found at i:88553733 original size:27 final size:27
Alignment explanation
Indices: 88553677--88553734 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 27
88553667 GTGATAGAGT
* *
88553677 CACCAGATACAGATATAGTGGCAGAGC
1 CACCAGATACAGATATAGTGGCAAACC
88553704 CACCAGA-ATCAGATA-ATGTGGCAAACC
1 CACCAGATA-CAGATATA-GTGGCAAACC
88553731 CACC
1 CACC
88553735 TAACAGAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 2 0.07
27 25 0.93
ACGTcount: A:0.38, C:0.28, G:0.21, T:0.14
Consensus pattern (27 bp):
CACCAGATACAGATATAGTGGCAAACC
Found at i:88554106 original size:27 final size:26
Alignment explanation
Indices: 88554037--88554119 Score: 94
Period size: 27 Copynumber: 3.1 Consensus size: 26
88554027 TCGATCGGTC
* * *
88554037 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
*
88554063 ATACAGATATTGAGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
* *
88554090 AACAGATATTTTTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
88554117 AAC
1 AAC
88554120 GCTTCCTCCG
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
26 8 0.17
27 40 0.83
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:88554349 original size:27 final size:27
Alignment explanation
Indices: 88554319--88554513 Score: 230
Period size: 27 Copynumber: 7.2 Consensus size: 27
88554309 GGGCAAAATG
* * * *
88554319 GTAATTTTACCCCACAAGGGTATCTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
88554346 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
88554373 GTATTTCTACCCCACAAGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
**
88554399 GATAATTCTACCCTACAGGGGTATTTTG
1 G-TAATTCTACCCTACAGGGGTATTTCA
* * *
88554427 GTAATTCTATCCTATAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
88554454 GTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
88554481 GAAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
88554508 GCAATT
1 GTAATT
88554514 TCACAATCAA
Statistics
Matches: 144, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
26 1 0.01
27 142 0.99
28 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:88554384 original size:54 final size:54
Alignment explanation
Indices: 88554318--88554513 Score: 259
Period size: 54 Copynumber: 3.6 Consensus size: 54
88554308 GGGGCAAAAT
* *
88554318 GGTAATTTTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCCACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
* *
88554372 GGTATTTCTACCCCACAAGGGTATTTC-GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCCACAAGGGTATTTCAG-TAATTCTACCCTACAGGGGTATTTC
* * * *
88554426 GGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCCACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
* * * * *
88554480 AGAAATTCTACCCTACAGGGGTATTTCAGCAATT
1 GGTAATTCTACCCCACAAGGGTATTTCAGTAATT
88554514 TCACAATCAA
Statistics
Matches: 124, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
53 1 0.01
54 122 0.98
55 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (54 bp):
GGTAATTCTACCCCACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
Found at i:88554548 original size:27 final size:27
Alignment explanation
Indices: 88554518--88555016 Score: 549
Period size: 27 Copynumber: 18.5 Consensus size: 27
88554508 GCAATTTCAC
*
88554518 AATCAAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
88554545 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
88554572 AA-CTGAGGGTAAACCAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * * **
88554599 AATCAAGGGTAAAATGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
88554626 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* **
88554653 AATCAAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
88554680 AA-CTGAGGGTAGAACGATAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* ** *
88554707 AATCAAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
88554734 AATTGAGGGTTAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* **
88554761 AATCGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
88554788 AATCAAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
88554815 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
88554842 AA-CTAAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
**
88554869 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
88554896 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* ** *
88554923 AATCAAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
88554950 AATTGAGGGTTAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
88554977 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
88555004 AA-CTGAGGGTAAA
1 AATC-GAGGGTAAA
88555017 CCAGTAAAGG
Statistics
Matches: 390, Mismatches: 73, Indels: 18
0.81 0.15 0.04
Matches are distributed among these distances:
26 5 0.01
27 381 0.98
28 4 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:88554594 original size:54 final size:54
Alignment explanation
Indices: 88554523--88555209 Score: 724
Period size: 54 Copynumber: 12.9 Consensus size: 54
88554513 TTCACAATCA
*
88554523 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTTTGTAAACTG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAACTG
* * * * * *
88554577 AGGGTAAACCAGTAATTCTGTAAATCAAGGGTAAAATGGTAATT-T-TACAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTA-AACT-G
* *
88554631 AGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAA-TAGTAATTCTGTAAACTG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGA-TAATTCTGTAAACTG
* * * * * * *
88554685 AGGGTAGAACGATAATTCTATAAATCAAGGGTAAAA-TAGTAATTCTATAAATTG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGA-TAATTCTGTAAACTG
* * * *
88554739 AGGGTTAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATT-T-TACAAATCA
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTA-AACT-G
* *
88554793 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAC-AGTAATTCTGTAAACTA
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGA-TAATTCTGTAAACTG
* * *
88554847 AGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAA-TAGTAATTCTGTAAACTG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGA-TAATTCTGTAAACTG
* * * *
88554901 AGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAA-TAGTAATTCTATAAATTG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGA-TAATTCTGTAAACTG
* *
88554955 AGGGTTAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTTTGTAAACTG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAACTG
* * *
88555009 AGGGT-AAAC-------CAGT-AA---AGGGTAAAACGATAATTCTATAAATTG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAACTG
* *
88555051 AGGGTAAAACAGTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGTAAA-TCG
1 AGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACGATAATTCTGTAAACT-G
*
88555105 AGGGTAAAACGGTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGTAAA-TCG
1 AGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACGATAATTCTGTAAACT-G
*
88555159 AGGGTAAAACGGTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGTAAA
1 AGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACGATAATTCTGTAAA
88555210 TCGGGAGTAC
Statistics
Matches: 555, Mismatches: 52, Indels: 52
0.84 0.08 0.08
Matches are distributed among these distances:
42 29 0.05
43 4 0.01
45 2 0.00
46 3 0.01
50 3 0.01
51 2 0.00
52 4 0.01
53 13 0.02
54 482 0.87
55 9 0.02
56 4 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (54 bp):
AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAACTG
Found at i:88554618 original size:81 final size:80
Alignment explanation
Indices: 88554518--88555210 Score: 756
Period size: 81 Copynumber: 8.7 Consensus size: 80
88554508 GCAATTTCAC
* * *
88554518 AATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTTTGTAAACTGAGGGTA
1 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAA-TGAGGGTA
*
88554583 AACCAGTAATTCTGTA
65 AAACAGTAATTCTGTA
* * * ** *
88554599 AATCAAGGGTAAAATGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTA
1 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAAT-GAGGGTA
*
88554664 AAATAGTAATTCTGTA
65 AAACAGTAATTCTGTA
* * * * ** *
88554680 AA-CTGAGGGTAGAACGATAATTCTATAAATCAAGGGTAAAATAGTAATTCTATAAATTGAGGGT
1 AATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAA-TGAGGGT
* *
88554744 TAAACGGTAATTCTGTA
64 AAAACAGTAATTCTGTA
* ** * *
88554761 AATCGAGGGTAAAACGGTAATTTTACAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
1 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAAT-GAGGGTA
88554826 AAACAGTAATTCTGTA
65 AAACAGTAATTCTGTA
* * * **
88554842 AA-CTAAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGT
1 AATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAA-TGAGGGT
*
88554906 AAAACGGTAATTCTGTA
64 AAAACAGTAATTCTGTA
* ** * * *
88554923 AATCAAGGGTAAAATAGTAATTCTATAAATTGAGGGTTAAACGGTAATTCTGTAAATCGAGGGTA
1 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAAT-GAGGGTA
*
88554988 AAAC-GATAATTTTGTA
65 AAACAG-TAATTCTGTA
* * *
88555004 AA-CTGAGGGT-AAAC-------CAGT-AA---AGGGTAAAACGATAATTCTATAAATTGAGGGT
1 AATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAA-TGAGGGT
88555056 AAAACAGTAATTCTGTA
64 AAAACAGTAATTCTGTA
88555073 AA-CTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGT
1 AATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAA-TGAGGGT
*
88555137 AAAACGGTAATTCTGTA
64 AAAACAGTAATTCTGTA
88555154 AATCGAGGGTAAAACGGTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGTAAAT
1 AATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAAT
88555211 CGGGAGTACT
Statistics
Matches: 524, Mismatches: 61, Indels: 55
0.82 0.10 0.09
Matches are distributed among these distances:
69 51 0.10
70 6 0.01
72 2 0.00
73 2 0.00
77 3 0.01
78 2 0.00
80 12 0.02
81 441 0.84
82 5 0.01
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.28
Consensus pattern (80 bp):
AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATGAGGGTAA
AACAGTAATTCTGTA
Found at i:88555028 original size:42 final size:42
Alignment explanation
Indices: 88554982--88555065 Score: 132
Period size: 42 Copynumber: 2.0 Consensus size: 42
88554972 CTGTAAATCG
* * *
88554982 AGGGTAAAACGATAATTTTGTAAACTGAGGGTAAACCAGTAA
1 AGGGTAAAACGATAATTCTATAAACTGAGGGTAAAACAGTAA
*
88555024 AGGGTAAAACGATAATTCTATAAATTGAGGGTAAAACAGTAA
1 AGGGTAAAACGATAATTCTATAAACTGAGGGTAAAACAGTAA
88555066 TTCTGTAAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.45, C:0.08, G:0.23, T:0.24
Consensus pattern (42 bp):
AGGGTAAAACGATAATTCTATAAACTGAGGGTAAAACAGTAA
Found at i:88555034 original size:69 final size:69
Alignment explanation
Indices: 88554955--88555085 Score: 201
Period size: 69 Copynumber: 1.9 Consensus size: 69
88554945 CTATAAATTG
* * * *
88554955 AGGGTTAAACGGTAATTCTGTAAATCGAGGGTAAAAC-GATAATTTTGTAAACTGAGGGTAAACC
1 AGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACAG-TAATTCTGTAAACTGAGGGTAAACC
88555019 AGTAA
65 AGTAA
*
88555024 AGGGTAAAACGATAATTCTATAAATTGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAA
1 AGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAA
88555086 ACGGTAATTC
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
69 55 0.98
70 1 0.02
ACGTcount: A:0.41, C:0.09, G:0.24, T:0.26
Consensus pattern (69 bp):
AGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAACCA
GTAA
Found at i:88555040 original size:123 final size:123
Alignment explanation
Indices: 88554901--88555139 Score: 388
Period size: 123 Copynumber: 1.9 Consensus size: 123
88554891 CTGTAAACTG
* * * * *
88554901 AGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATTGAGGGTTAAACG
1 AGGGTAAAACGATAATTCTATAAATCAAGGGTAAAACAGTAATTCTATAAACTGAGGGTAAAACG
*
88554966 GTAATTCTGTAAATCGAGGGTAAAACGATAATTTTGTAAACTGAGGGTAAACCAGTAA
66 GTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAACTGAGGGTAAACCAGTAA
** *
88555024 AGGGTAAAACGATAATTCTATAAATTGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAACG
1 AGGGTAAAACGATAATTCTATAAATCAAGGGTAAAACAGTAATTCTATAAACTGAGGGTAAAACG
*
88555089 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAA
66 GTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAACTGAGGGTAAA
88555140 ACGGTAATTC
Statistics
Matches: 106, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
123 106 1.00
ACGTcount: A:0.41, C:0.09, G:0.23, T:0.27
Consensus pattern (123 bp):
AGGGTAAAACGATAATTCTATAAATCAAGGGTAAAACAGTAATTCTATAAACTGAGGGTAAAACG
GTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAACTGAGGGTAAACCAGTAA
Found at i:88555041 original size:150 final size:150
Alignment explanation
Indices: 88554886--88555166 Score: 415
Period size: 150 Copynumber: 1.9 Consensus size: 150
88554876 GGTAAAATAG
* * *
88554886 TAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAA-TCAAGGGTAAAATAGTAATTCTATA
1 TAATTCTATAAACTGAGGGTAAAACAGTAATTCTGTAAACT-AAGGGTAAAACAGTAATTCTATA
* * *
88554950 AATTGAGGGTTAAACGGTAATTCTGTAAA-TCGAGGGTAAAACGATAATTTTGTAAA-CTGAGGG
65 AATCGAGGGTAAAACGGTAATTCTGTAAACT-GAGGGTAAAACGATAATTCTGTAAATC-GAGGG
88555013 TAAACCAGTAAAGGGTAAAACGA
128 TAAACCAGTAAAGGGTAAAACGA
* * * *
88555036 TAATTCTATAAATTGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAA
1 TAATTCTATAAACTGAGGGTAAAACAGTAATTCTGTAAACTAAGGGTAAAACAGTAATTCTATAA
*
88555101 ATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAA
66 ATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAA
88555166 A
131 A
88555167 ACGGTAATTC
Statistics
Matches: 117, Mismatches: 11, Indels: 6
0.87 0.08 0.04
Matches are distributed among these distances:
150 114 0.97
151 3 0.03
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.27
Consensus pattern (150 bp):
TAATTCTATAAACTGAGGGTAAAACAGTAATTCTGTAAACTAAGGGTAAAACAGTAATTCTATAA
ATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAA
ACCAGTAAAGGGTAAAACGA
Found at i:88555054 original size:27 final size:27
Alignment explanation
Indices: 88555024--88555210 Score: 302
Period size: 27 Copynumber: 6.9 Consensus size: 27
88555014 AAACCAGTAA
* *
88555024 AGGGTAAAACGATAATTCTATAAATTG
1 AGGGTAAAACGGTAATTCTGTAAATTG
* *
88555051 AGGGTAAAACAGTAATTCTGTAAACTG
1 AGGGTAAAACGGTAATTCTGTAAATTG
*
88555078 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATTG
*
88555105 AGGGTAAAACGGTAATTCTGTAAACTG
1 AGGGTAAAACGGTAATTCTGTAAATTG
*
88555132 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATTG
*
88555159 AGGGTAAAACGGTAATTCTGTAAACTG
1 AGGGTAAAACGGTAATTCTGTAAATTG
88555186 AGGGTAAAACGGTAATTCTGTAAAT
1 AGGGTAAAACGGTAATTCTGTAAAT
88555211 CGGGAGTACT
Statistics
Matches: 146, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 146 1.00
ACGTcount: A:0.39, C:0.10, G:0.24, T:0.27
Consensus pattern (27 bp):
AGGGTAAAACGGTAATTCTGTAAATTG
Found at i:88555144 original size:177 final size:177
Alignment explanation
Indices: 88554846--88555193 Score: 570
Period size: 177 Copynumber: 2.0 Consensus size: 177
88554836 TCTGTAAACT
* * * * *
88554846 AAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
1 AAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAAC
* * *
88554911 GGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATTGAGGGTTAAACGGTAATTCTGT
66 GGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAAACTGAGGGTAAAACGGTAATTCTGT
*
88554976 AAATCGAGGGTAAAACGATAATTTTGTAAACTGAGGGTAAACCAGTA
131 AAATCGAGGGTAAAACGATAATTCTGTAAACTGAGGGTAAACCAGTA
*
88555023 AAGGGTAAAACGATAATTCTATAAATTGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAAC
1 AAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAAC
* * *
88555088 GGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGT
66 GGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAAACTGAGGGTAAAACGGTAATTCTGT
*
88555153 AAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAA
131 AAATCGAGGGTAAAACGATAATTCTGTAAACTGAGGGTAAA
88555194 ACGGTAATTC
Statistics
Matches: 157, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
177 157 1.00
ACGTcount: A:0.40, C:0.09, G:0.24, T:0.27
Consensus pattern (177 bp):
AAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAAC
GGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAAACTGAGGGTAAAACGGTAATTCTGT
AAATCGAGGGTAAAACGATAATTCTGTAAACTGAGGGTAAACCAGTA
Found at i:88556207 original size:53 final size:53
Alignment explanation
Indices: 88556104--88556241 Score: 188
Period size: 53 Copynumber: 2.6 Consensus size: 53
88556094 GCTACAAAGG
*
88556104 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCATGTAAGA
1 CCATGTCAAGACATGGCATTGGTAAGTT-C-ATAAGGCAAAGGTCCCATGTAAGA
* * * *
88556159 CCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC-AAGGATTCCATGTAAGA
1 CCATGTCAAGACATGGCATTGGTAAGTTCATAAGGCAAAGG-TCCCATGTAAGA
*
88556212 CCATGTCAAGACATGGCAATGGTAAGTTCA
1 CCATGTCAAGACATGGCATTGGTAAGTTCA
88556242 AAAAGGAAAA
Statistics
Matches: 73, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
52 4 0.05
53 44 0.60
54 1 0.01
55 24 0.33
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.23
Consensus pattern (53 bp):
CCATGTCAAGACATGGCATTGGTAAGTTCATAAGGCAAAGGTCCCATGTAAGA
Found at i:88559544 original size:27 final size:27
Alignment explanation
Indices: 88559514--88559817 Score: 428
Period size: 27 Copynumber: 11.3 Consensus size: 27
88559504 AAAATTACTA
* *
88559514 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
88559541 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
88559568 AAATAACCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * **
88559595 TAATACCCCTGTAGGGTAGAATCATTG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
88559622 CAATACCCCTGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
**
88559649 AAATACCCCTGTAGGGTAGAATTATAG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
88559676 AAATACCCCTGTAGGGTAGAATTACCA
1 AAATACCCCTGTAGGGTAGAATTACCG
**
88559703 AAATACCCCTGTAGGGTAGAATTATTG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
88559730 TAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* **
88559757 AAATGCCCCTGTAGGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACCG
*
88559784 AAATACCCCTGTAGGGTGGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
88559811 AGATACC
1 AAATACC
88559818 TTGTGGAGTA
Statistics
Matches: 246, Mismatches: 31, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 246 1.00
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.25
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:88560314 original size:22 final size:22
Alignment explanation
Indices: 88560262--88560326 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
88560252 TTAAAGCCTT
* *
88560262 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
88560284 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
88560306 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
88560327 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:88560515 original size:27 final size:27
Alignment explanation
Indices: 88560485--88560588 Score: 129
Period size: 27 Copynumber: 3.9 Consensus size: 27
88560475 ATTCTGTTAA
* *
88560485 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
88560512 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
* *
88560539 GTAGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
88560566 GTGACTCTGTCACAATATCTGTT
1 GTGGCTCTGCCACAATATCTGTT
88560589 GACCGATCGA
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 8 0.12
27 51 0.77
28 7 0.11
ACGTcount: A:0.19, C:0.23, G:0.20, T:0.38
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:88560708 original size:22 final size:22
Alignment explanation
Indices: 88560676--88560734 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
88560666 CCCGTTATTA
*
88560676 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
88560698 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
88560720 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
88560735 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:88560921 original size:27 final size:27
Alignment explanation
Indices: 88560899--88560967 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
88560889 TAGGTGGGTT
*
88560899 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
88560926 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
*
88560953 TGTCACAATATCTGT
1 TGCCACAATATCTGT
88560968 TGACCGATCG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
27 37 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.19, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:88561088 original size:22 final size:22
Alignment explanation
Indices: 88561056--88561114 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
88561046 CCCGTTATTA
*
88561056 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
88561078 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
88561100 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
88561115 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:88561188 original size:380 final size:380
Alignment explanation
Indices: 88560519--88561349 Score: 1610
Period size: 380 Copynumber: 2.2 Consensus size: 380
88560509 CTGGTGGCTA
* *
88560519 TGCCACAAATATCTG-TTCTGGTAGCTCTGCCACAATATCTGTATCTGGTGACTCTGTCACAATA
1 TGCCAC-ATTATCTGATTCTGGTGGCTCTGCCACAATATCTGTATCTGGTGACTCTGTCACAATA
88560583 TCTGTTGACCGATCGATGGCTAAGTGCCGATCATGCTACCGAAGGCTGTGTGCCGTTGTTGTGGG
65 TCTGTTGACCGATCGATGGCTAAGTGCCGATCATGCTACCGAAGGCTGTGTGCCGTTGTTGTGGG
88560648 CTTCGTGCCGATTATAGACCCGTTATTAATGGCTCTGTGCCAACCTAAATATGGCTTTGTGCCAT
130 CTTCGTGCCGATTATAGACCCGTTATTAATGGCTCTGTGCCAACCTAAATATGGCTTTGTGCCAT
88560713 CTTGACTATGGCTTCGTGCCAAACGTATTTACCTGTAGCTATGTGCCTAACATATTTGTTGACGA
195 CTTGACTATGGCTTCGTGCCAAACGTATTTACCTGTAGCTATGTGCCTAACATATTTGTTGACGA
88560778 CTCTGTGTCGATCATATTTACCGAAGGCTGTGCGCCAGTTATATTACCGTCACTGATGGCTATGT
260 CTCTGTGTCGATCATATTTACCGAAGGCTGTGCGCCAGTTATATTACCGTCACTGATGGCTATGT
88560843 GCTGAAGTTATTACAGTTATCTACGGCTTTGTGCCACGTATTCTGTTAGGTGGGTT
325 GCTGAAGTTATTACAGTTATCTACGGCTTTGTGCCACGTATTCTGTTAGGTGGGTT
88560899 TGCCACATTATCTGATTCTGGTGGCTCTGCCACAATATCTGTATCTGGTGACTCTGTCACAATAT
1 TGCCACATTATCTGATTCTGGTGGCTCTGCCACAATATCTGTATCTGGTGACTCTGTCACAATAT
88560964 CTGTTGACCGATCGATGGCTAAGTGCCGATCATGCTACCGAAGGCTGTGTGCCGTTGTTGTGGGC
66 CTGTTGACCGATCGATGGCTAAGTGCCGATCATGCTACCGAAGGCTGTGTGCCGTTGTTGTGGGC
88561029 TTCGTGCCGATTATAGACCCGTTATTAATGGCTCTGTGCCAACCTAAATATGGCTTTGTGCCATC
131 TTCGTGCCGATTATAGACCCGTTATTAATGGCTCTGTGCCAACCTAAATATGGCTTTGTGCCATC
88561094 TTGACTATGGCTTCGTGCCAAACGTATTTACCTGTAGCTATGTGCCTAACATATTTGTTGACGAC
196 TTGACTATGGCTTCGTGCCAAACGTATTTACCTGTAGCTATGTGCCTAACATATTTGTTGACGAC
88561159 TCTGTGTCGATCATATTTACCGAAGGCTGTGCGCCAGTTATATTACCGTCACTGATGGCTATGTG
261 TCTGTGTCGATCATATTTACCGAAGGCTGTGCGCCAGTTATATTACCGTCACTGATGGCTATGTG
88561224 CTGAAGTTATTACAGTTATCTACGGCTTTGTGCCACGTATTCTGTTAGGTGGGTT
326 CTGAAGTTATTACAGTTATCTACGGCTTTGTGCCACGTATTCTGTTAGGTGGGTT
* *
88561279 TGCCACATTATCTGATTCTGGTGGCTCTGCCACAATATCTGTATCCGGTGACTCTGTCACGATAT
1 TGCCACATTATCTGATTCTGGTGGCTCTGCCACAATATCTGTATCTGGTGACTCTGTCACAATAT
88561344 CTGTTG
66 CTGTTG
88561350 TGGTAGCCAT
Statistics
Matches: 446, Mismatches: 4, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
379 7 0.02
380 439 0.98
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.34
Consensus pattern (380 bp):
TGCCACATTATCTGATTCTGGTGGCTCTGCCACAATATCTGTATCTGGTGACTCTGTCACAATAT
CTGTTGACCGATCGATGGCTAAGTGCCGATCATGCTACCGAAGGCTGTGTGCCGTTGTTGTGGGC
TTCGTGCCGATTATAGACCCGTTATTAATGGCTCTGTGCCAACCTAAATATGGCTTTGTGCCATC
TTGACTATGGCTTCGTGCCAAACGTATTTACCTGTAGCTATGTGCCTAACATATTTGTTGACGAC
TCTGTGTCGATCATATTTACCGAAGGCTGTGCGCCAGTTATATTACCGTCACTGATGGCTATGTG
CTGAAGTTATTACAGTTATCTACGGCTTTGTGCCACGTATTCTGTTAGGTGGGTT
Found at i:88561328 original size:27 final size:28
Alignment explanation
Indices: 88561279--88561347 Score: 79
Period size: 27 Copynumber: 2.5 Consensus size: 28
88561269 TAGGTGGGTT
* * *
88561279 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTATTCCGGTGACTC
88561306 TGCCACAATATCTGTA-TCCGGTGACTC
1 TGCCACAATATCTGTATTCCGGTGACTC
* *
88561333 TGTCACGATATCTGT
1 TGCCACAATATCTGT
88561348 TGTGGTAGCC
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
27 35 0.97
28 1 0.03
ACGTcount: A:0.19, C:0.26, G:0.20, T:0.35
Consensus pattern (28 bp):
TGCCACAATATCTGTATTCCGGTGACTC
Found at i:88561506 original size:6 final size:6
Alignment explanation
Indices: 88561495--88561541 Score: 76
Period size: 6 Copynumber: 7.8 Consensus size: 6
88561485 CTGTCACGTA
* *
88561495 ATTCTG ATTCTG ATTCTG ATTCTG GTACTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
88561542 CATTTTGGTT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.17, C:0.17, G:0.17, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:88563648 original size:81 final size:81
Alignment explanation
Indices: 88563513--88563743 Score: 338
Period size: 81 Copynumber: 2.9 Consensus size: 81
88563503 TAGTTTACCA
* ** * *
88563513 AATTACCAAAATACCCCTGGT-TTGTAAAATTACTAAAATACCCTTGTAGGGTAGAATTATCGAA
1 AATTACCGAAATACCCCT-GTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTATCGAA
88563577 ATACCCCTGTAGGGTAG
65 ATACCCCTGTAGGGTAG
* *
88563594 AATTACCGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTATCGCAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTATCGAAA
88563659 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
* * * * *
88563675 AATTACCGAAATACCTCTATAGGGTAGAATTACTAAAATACCCCTGTAGGGTGGAATTACCGAGA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTATCGAAA
88563740 TACC
66 TACC
88563744 TTGTGGAGTA
Statistics
Matches: 135, Mismatches: 14, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
80 2 0.01
81 133 0.99
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (81 bp):
AATTACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTATCGAAA
TACCCCTGTAGGGTAG
Found at i:88563742 original size:27 final size:27
Alignment explanation
Indices: 88563513--88563743 Score: 293
Period size: 27 Copynumber: 8.6 Consensus size: 27
88563503 TAGTTTACCA
* ** *
88563513 AATTACCAAAATACCCCTGGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
** *
88563540 AATTACTAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
88563567 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
88563594 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
88563621 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
88563648 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
88563675 AATTACCGAAATACCTCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
88563702 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
88563729 AATTACCGAGATACC
1 AATTACCGAAATACC
88563744 TTGTGGAGTA
Statistics
Matches: 177, Mismatches: 26, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
26 2 0.01
27 175 0.99
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:88564240 original size:22 final size:22
Alignment explanation
Indices: 88564188--88564252 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
88564178 TTAAAGCCTT
* *
88564188 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
88564210 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
88564232 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
88564253 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:88564441 original size:27 final size:27
Alignment explanation
Indices: 88564411--88564514 Score: 129
Period size: 27 Copynumber: 3.9 Consensus size: 27
88564401 ATTCTGTTAA
* *
88564411 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
88564438 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
* *
88564465 GTAGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
88564492 GTGACTCTGTCACAATATCTGTT
1 GTGGCTCTGCCACAATATCTGTT
88564515 GACCGATCGA
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 8 0.12
27 51 0.77
28 7 0.11
ACGTcount: A:0.19, C:0.23, G:0.20, T:0.38
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:88564634 original size:22 final size:22
Alignment explanation
Indices: 88564602--88564660 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
88564592 CCCATTATTA
*
88564602 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
88564624 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
88564646 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
88564661 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:88564847 original size:27 final size:27
Alignment explanation
Indices: 88564825--88564893 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
88564815 TAGGTGGGTT
*
88564825 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
88564852 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
*
88564879 TGTCACAATATCTGT
1 TGCCACAATATCTGT
88564894 TGACCGATCG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
27 37 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.19, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:88565014 original size:22 final size:22
Alignment explanation
Indices: 88564982--88565040 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
88564972 CCCGTTATTA
*
88564982 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
88565004 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
88565026 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
88565041 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:88565114 original size:380 final size:380
Alignment explanation
Indices: 88564445--88565274 Score: 1608
Period size: 380 Copynumber: 2.2 Consensus size: 380
88564435 CTGGTGGCTA
* *
88564445 TGCCACAAATATCTG-TTCTGGTAGCTCTGCCACAATATCTGTATCTGGTGACTCTGTCACAATA
1 TGCCAC-ATTATCTGATTCTGGTGGCTCTGCCACAATATCTGTATCTGGTGACTCTGTCACAATA
88564509 TCTGTTGACCGATCGATGGCTAAGTGCCGATCACGCTACCGAAGGCTGTGTGCCGTTGTTGTGGG
65 TCTGTTGACCGATCGATGGCTAAGTGCCGATCACGCTACCGAAGGCTGTGTGCCGTTGTTGTGGG
88564574 CTTCGTGCCGATTATAGACCCATTATTAATGGCTCTGTGCCAACCTAAATATGGCTTTGTGCCAT
130 CTTCGTGCCGATTATAGACCCATTATTAATGGCTCTGTGCCAACCTAAATATGGCTTTGTGCCAT
88564639 CTTGACTATGGCTTCGTGCCAAACGTATTTACCTGTAGCTATGTACCTAACATATTTGTTGACGA
195 CTTGACTATGGCTTCGTGCCAAACGTATTTACCTGTAGCTATGTACCTAACATATTTGTTGACGA
88564704 CTTTGTGTCGATCATATTTACCGAAGGCTGTGCGCCAGTTATATTACCGTCACTGATGGCTATGT
260 CTTTGTGTCGATCATATTTACCGAAGGCTGTGCGCCAGTTATATTACCGTCACTGATGGCTATGT
88564769 GCCGAAGTTATTACAGTTATCTACGGCTTTGTGCCACGTATTCTGTTAGGTGGGTT
325 GCCGAAGTTATTACAGTTATCTACGGCTTTGTGCCACGTATTCTGTTAGGTGGGTT
88564825 TGCCACATTATCTGATTCTGGTGGCTCTGCCACAATATCTGTATCTGGTGACTCTGTCACAATAT
1 TGCCACATTATCTGATTCTGGTGGCTCTGCCACAATATCTGTATCTGGTGACTCTGTCACAATAT
88564890 CTGTTGACCGATCGATGGCTAAGTGCCGATCACGCTACCGAAGGCTGTGTGCCGTTGTTGTGGGC
66 CTGTTGACCGATCGATGGCTAAGTGCCGATCACGCTACCGAAGGCTGTGTGCCGTTGTTGTGGGC
*
88564955 TTCGTGCCGATTATAGACCCGTTATTAATGGCTCTGTGCCAACCTAAATATGGCTTTGTGCCATC
131 TTCGTGCCGATTATAGACCCATTATTAATGGCTCTGTGCCAACCTAAATATGGCTTTGTGCCATC
88565020 TTGACTATGGCTTCGTGCCAAACGTATTTACCTGTAGCTATGTACCTAACATATTTGTTGACGAC
196 TTGACTATGGCTTCGTGCCAAACGTATTTACCTGTAGCTATGTACCTAACATATTTGTTGACGAC
88565085 TTTGTGTCGATCATATTTACCGAAGGCTGTGCGCCAGTTATATTACCGTCACTGATGGCTATGTG
261 TTTGTGTCGATCATATTTACCGAAGGCTGTGCGCCAGTTATATTACCGTCACTGATGGCTATGTG
88565150 CCGAAGTTATTACAGTTATCTACGGCTTTGTGCCACGTATTCTGTTAGGTGGGTT
326 CCGAAGTTATTACAGTTATCTACGGCTTTGTGCCACGTATTCTGTTAGGTGGGTT
*
88565205 TGCCACATTATCTGATTCTGGTGGCTCTGCCACAATATCTGTATCTGGTGACTCTGTCACGATAT
1 TGCCACATTATCTGATTCTGGTGGCTCTGCCACAATATCTGTATCTGGTGACTCTGTCACAATAT
88565270 CTGTT
66 CTGTT
88565275 CTGGCAGCCA
Statistics
Matches: 445, Mismatches: 4, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
379 7 0.02
380 438 0.98
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (380 bp):
TGCCACATTATCTGATTCTGGTGGCTCTGCCACAATATCTGTATCTGGTGACTCTGTCACAATAT
CTGTTGACCGATCGATGGCTAAGTGCCGATCACGCTACCGAAGGCTGTGTGCCGTTGTTGTGGGC
TTCGTGCCGATTATAGACCCATTATTAATGGCTCTGTGCCAACCTAAATATGGCTTTGTGCCATC
TTGACTATGGCTTCGTGCCAAACGTATTTACCTGTAGCTATGTACCTAACATATTTGTTGACGAC
TTTGTGTCGATCATATTTACCGAAGGCTGTGCGCCAGTTATATTACCGTCACTGATGGCTATGTG
CCGAAGTTATTACAGTTATCTACGGCTTTGTGCCACGTATTCTGTTAGGTGGGTT
Found at i:88565227 original size:27 final size:27
Alignment explanation
Indices: 88565205--88565278 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
88565195 TAGGTGGGTT
*
88565205 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
88565232 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
88565259 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
88565279 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.12
27 36 0.86
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:88565405 original size:6 final size:6
Alignment explanation
Indices: 88565396--88565467 Score: 67
Period size: 6 Copynumber: 11.8 Consensus size: 6
88565386 TTGCATTCAC
* * * *
88565396 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTA ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
88565445 -TTACTG ATTCTG ATTCTG ATTCT
1 ATT-CTG ATTCTG ATTCTG ATTCT
88565468 CATTTTGGTT
Statistics
Matches: 55, Mismatches: 6, Indels: 10
0.77 0.08 0.14
Matches are distributed among these distances:
5 3 0.05
6 47 0.85
7 4 0.07
8 1 0.02
ACGTcount: A:0.21, C:0.18, G:0.12, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:88573099 original size:118 final size:114
Alignment explanation
Indices: 88572936--88573156 Score: 309
Period size: 118 Copynumber: 1.9 Consensus size: 114
88572926 TTCTTAGAAC
* *
88572936 AAAATAATAATAAAATATAAAAAATTCTAATCCTGCTCAAGGTTAATAACAATTAATATATAATA
1 AAAATAATAATAAAATATAAAAAATTCTAATCATGATCAAGGTTAATAACAATTAATATATAAT-
* * *
88573001 AAATATATTATTTTTTATTATCCTATTTATTTAAAAATAAATACTCTTAGGT
65 -AATATATTAGTTGTTATCATCCTATTTA-TTAAAAATAAATACTCTTAGGT
* *
88573053 AAAATAATGATAAAATAATAAACAATTCTAATCAT-ATACAAGGTTAATAACAATTAATATATAA
1 AAAATAATAATAAAAT-ATAAAAAATTCTAATCATGAT-CAAGGTTAATAACAATTAATATATAA
* *
88573117 TTATATATTAGTTGTTATCATCCTATTTATTAAAATTAAA
64 TAATATATTAGTTGTTATCATCCTATTTATTAAAAATAAA
88573157 AATTAAAAAT
Statistics
Matches: 93, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
115 10 0.11
116 24 0.26
117 16 0.17
118 43 0.46
ACGTcount: A:0.49, C:0.08, G:0.05, T:0.38
Consensus pattern (114 bp):
AAAATAATAATAAAATATAAAAAATTCTAATCATGATCAAGGTTAATAACAATTAATATATAATA
ATATATTAGTTGTTATCATCCTATTTATTAAAAATAAATACTCTTAGGT
Found at i:88575646 original size:26 final size:26
Alignment explanation
Indices: 88575610--88575662 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
88575600 TTTCTTCGAA
* *
88575610 CCACCTTAGTACCTTAGTTAGATTGG
1 CCACCTTAGTACCATAGCTAGATTGG
88575636 CCACCTTAGTACCATAGCTAGATTGG
1 CCACCTTAGTACCATAGCTAGATTGG
88575662 C
1 C
88575663 TAAGCAATTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (26 bp):
CCACCTTAGTACCATAGCTAGATTGG
Found at i:88584061 original size:40 final size:40
Alignment explanation
Indices: 88583979--88584235 Score: 324
Period size: 40 Copynumber: 6.5 Consensus size: 40
88583969 AAGCCAAGTA
* * * *
88583979 CCTTCGGGATTTA-ACCGGATATAGCT-ACTTGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
88584017 CCTTCGGAACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
88584057 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
88584097 CCTTCGGGACTTAGCCCGGATGTAATAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
88584137 CCTTCGGGACTTAGCCCAGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
88584177 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
88584217 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
88584236 TTATCATCCG
Statistics
Matches: 191, Mismatches: 24, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
38 11 0.06
39 17 0.09
40 163 0.85
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:88589690 original size:40 final size:40
Alignment explanation
Indices: 88589653--88589837 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
88589643 GCTACTCGTT
*
88589653 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
88589693 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
88589733 CAAATGCCTTCGGG-CTTAGCCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
88589772 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
88589813 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
88589838 CATCATTCAA
Statistics
Matches: 127, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
38 2 0.02
39 34 0.27
40 78 0.61
41 13 0.10
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:88589764 original size:79 final size:82
Alignment explanation
Indices: 88589653--88589837 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
88589643 GCTACTCGTT
* *
88589653 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
88589716 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
88589733 CAAATGCCTTCGGG-CTTAGCCCGGATT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
88589796 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
88589813 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
88589838 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 35 0.38
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:88592624 original size:29 final size:29
Alignment explanation
Indices: 88592591--88592656 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 29
88592581 ATCATATTCG
* * *
88592591 TATGGCCTACTGGGCCCAAATCACATGTA
1 TATGGCCCACTAGACCCAAATCACATGTA
** *
88592620 TATGGCCCGTTAGACCCAAATCACATTTA
1 TATGGCCCACTAGACCCAAATCACATGTA
88592649 TATGGCCC
1 TATGGCCC
88592657 GTTAGGCCTA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.26
Consensus pattern (29 bp):
TATGGCCCACTAGACCCAAATCACATGTA
Found at i:88592657 original size:29 final size:29
Alignment explanation
Indices: 88592605--88592661 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
88592595 GCCTACTGGG
88592605 CCCAAATCACATGTATATGGCCCGTTAGA
1 CCCAAATCACATGTATATGGCCCGTTAGA
*
88592634 CCCAAATCACATTTATATGGCCCGTTAG
1 CCCAAATCACATGTATATGGCCCGTTAG
88592662 GCCTAGTCAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (29 bp):
CCCAAATCACATGTATATGGCCCGTTAGA
Found at i:88592909 original size:16 final size:16
Alignment explanation
Indices: 88592888--88592931 Score: 79
Period size: 16 Copynumber: 2.8 Consensus size: 16
88592878 CCGTAGCCAA
88592888 ATTTCGGCTTTTCAGC
1 ATTTCGGCTTTTCAGC
*
88592904 ATTTCGGCTTTTTAGC
1 ATTTCGGCTTTTCAGC
88592920 ATTTCGGCTTTT
1 ATTTCGGCTTTT
88592932 GCCAATTCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.11, C:0.20, G:0.18, T:0.50
Consensus pattern (16 bp):
ATTTCGGCTTTTCAGC
Found at i:88601082 original size:47 final size:47
Alignment explanation
Indices: 88601019--88601123 Score: 174
Period size: 47 Copynumber: 2.2 Consensus size: 47
88601009 CCCTTCGGGA
* *
88601019 CTTATCACATTTATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
*
88601066 CTTATCACATATATACACTTTCACATCCATCGCATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
*
88601113 CTGATCACATA
1 CTTATCACATA
88601124 ATTAATACTG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 54 1.00
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
Found at i:88604701 original size:27 final size:29
Alignment explanation
Indices: 88604623--88604691 Score: 106
Period size: 29 Copynumber: 2.4 Consensus size: 29
88604613 ATATTCTATG
*
88604623 GCCCATTAGGCTCAAATCAC-TTGTATATA
1 GCCCATTAGGCCCAAATCACATT-TATATA
88604652 GCCCATTAGGCCCAAATCACATTTATAT-
1 GCCCATTAGGCCCAAATCACATTTATATA
88604680 GCCCATTAGGCC
1 GCCCATTAGGCC
88604692 TAGTTACATT
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
28 12 0.32
29 24 0.63
30 2 0.05
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (29 bp):
GCCCATTAGGCCCAAATCACATTTATATA
Found at i:88606202 original size:16 final size:16
Alignment explanation
Indices: 88606181--88606211 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
88606171 GAAAATTCAA
*
88606181 GATTTCGGGATTTTTG
1 GATTTCGAGATTTTTG
88606197 GATTTCGAGATTTTT
1 GATTTCGAGATTTTT
88606212 AGGGCGTTAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.06, G:0.26, T:0.52
Consensus pattern (16 bp):
GATTTCGAGATTTTTG
Found at i:88611019 original size:89 final size:89
Alignment explanation
Indices: 88610868--88611046 Score: 340
Period size: 89 Copynumber: 2.0 Consensus size: 89
88610858 TTACCAAGGG
*
88610868 TTCCTCACATTTTGAGCTCATTACATAAGAGTTTTATGTACATACCTGACTCATCTTGAATTGGA
1 TTCCTCACATATTGAGCTCATTACATAAGAGTTTTATGTACATACCTGACTCATCTTGAATTGGA
88610933 TTTGCACACAATTCACCTTTGACA
66 TTTGCACACAATTCACCTTTGACA
*
88610957 TTCCTCACATATTGAGCTCATTACATAAGAGTTTTATGTACATACCTGAGTCATCTTGAATTGGA
1 TTCCTCACATATTGAGCTCATTACATAAGAGTTTTATGTACATACCTGACTCATCTTGAATTGGA
88611022 TTTGCACACAATTCACCTTTGACA
66 TTTGCACACAATTCACCTTTGACA
88611046 T
1 T
88611047 ACTCATCAAA
Statistics
Matches: 88, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
89 88 1.00
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.37
Consensus pattern (89 bp):
TTCCTCACATATTGAGCTCATTACATAAGAGTTTTATGTACATACCTGACTCATCTTGAATTGGA
TTTGCACACAATTCACCTTTGACA
Found at i:88611234 original size:42 final size:39
Alignment explanation
Indices: 88611122--88611235 Score: 120
Period size: 43 Copynumber: 2.7 Consensus size: 39
88611112 TACCAAACCA
*
88611122 ATGCCATATCTCAGATATGGTCTTACACATGATCTCATATTG
1 ATGCCATATC-CAGATATGGTCTT--ACATGATCTCATATCG
* * *
88611164 ATACCAATAGTCTAGTTATGGTCTTACATGAAGTCTCATATCG
1 ATGCC-ATA-TCCAGATATGGTCTTACATG-A-TCTCATATCG
88611207 ATGCCATATCCAAGATATGGTCTTACATG
1 ATGCCATATCC-AGATATGGTCTTACATG
88611236 TAAATTGCAG
Statistics
Matches: 60, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
41 7 0.12
42 24 0.40
43 27 0.45
44 2 0.03
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (39 bp):
ATGCCATATCCAGATATGGTCTTACATGATCTCATATCG
Found at i:88612747 original size:39 final size:39
Alignment explanation
Indices: 88612693--88612771 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
88612683 ACATAGACAC
*
88612693 ATGAAACACATTATGAATCCTTTCTAGCTCTGTCGGTAA
1 ATGAAACACATTATGAATCCTTTCTAGCTCTATCGGTAA
88612732 ATGAAACACATTATGAATCCTTTCTAGCTCTATCGGTAA
1 ATGAAACACATTATGAATCCTTTCTAGCTCTATCGGTAA
88612771 A
1 A
88612772 GCTAACCGAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.33
Consensus pattern (39 bp):
ATGAAACACATTATGAATCCTTTCTAGCTCTATCGGTAA
Found at i:88619100 original size:42 final size:43
Alignment explanation
Indices: 88619053--88619167 Score: 112
Period size: 43 Copynumber: 2.7 Consensus size: 43
88619043 TACCGAACTA
* *
88619053 ATGCCATATCCTAGATATAGTCTTACACGTG-A-TCTCGTATCG
1 ATGCCATATCC-AGATATGGTCTTACACGTGAAGTCTCATATCG
** * *
88619095 ATGCCAATAGTCCATCTATGGTCTTA-A-ATGAAGTCTCATTTCG
1 ATGCC-ATA-TCCAGATATGGTCTTACACGTGAAGTCTCATATCG
88619138 ATGCCATATCCCAGATATGGTCTTACACGT
1 ATGCCATAT-CCAGATATGGTCTTACACGT
88619168 AAATCGCAAT
Statistics
Matches: 57, Mismatches: 9, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
41 3 0.05
42 23 0.40
43 27 0.47
44 4 0.07
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (43 bp):
ATGCCATATCCAGATATGGTCTTACACGTGAAGTCTCATATCG
Found at i:88623771 original size:27 final size:27
Alignment explanation
Indices: 88623729--88623875 Score: 168
Period size: 27 Copynumber: 5.4 Consensus size: 27
88623719 TAGATAAGTT
* * *
88623729 GTAGAATTATCGAAATAACCTTGTAGG
1 GTAGAATTACCAAAATACCCTTGTAGG
*
88623756 GTAGAATTACCAAAATACCCCTGTAGG
1 GTAGAATTACCAAAATACCCTTGTAGG
* *
88623783 ATAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTACCAAAATACCCTTGTAGG
* * * * *
88623810 GTAGAAATATCGAAATACCCCTATAGG
1 GTAGAATTACCAAAATACCCTTGTAGG
* *
88623837 GTAGAATTACCAAGATACCCTTGTGGG
1 GTAGAATTACCAAAATACCCTTGTAGG
*
88623864 GTAAAATTACCA
1 GTAGAATTACCA
88623876 TTTTGCCCCA
Statistics
Matches: 100, Mismatches: 20, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 100 1.00
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (27 bp):
GTAGAATTACCAAAATACCCTTGTAGG
Found at i:88623805 original size:54 final size:54
Alignment explanation
Indices: 88623730--88623875 Score: 195
Period size: 54 Copynumber: 2.7 Consensus size: 54
88623720 AGATAAGTTG
* * *
88623730 TAGAATTATCGAAATAACCTTGTAGGGTAGAATTACCAAAATACCCCTGTAGGA
1 TAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTATAGGA
* * * *
88623784 TAGAATTACCGAAATACCCTTGTAGGGTAGAAATATCGAAATACCCCTATAGGG
1 TAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTATAGGA
* *
88623838 TAGAATTACC-AAGATACCCTTGTGGGGTAAAATTACCA
1 TAGAATTACCGAA-ATACCCTTGTAGGGTAGAATTACCA
88623876 TTTTGCCCCA
Statistics
Matches: 79, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
53 2 0.03
54 77 0.97
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.25
Consensus pattern (54 bp):
TAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTATAGGA
Found at i:88624661 original size:27 final size:26
Alignment explanation
Indices: 88624621--88624680 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
88624611 ACACATATAT
* *
88624621 ATATCTATTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* *
88624647 ATATCTGTATCTGGTGACTTCGCCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
88624674 ATATCTG
1 ATATCTG
88624681 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 7 0.24
27 22 0.76
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.33
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:88627309 original size:39 final size:39
Alignment explanation
Indices: 88627255--88627332 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
88627245 ATAAACTGTA
88627255 TAGAGATGTGCCTATAGAAACTTAAGGAAAAGTTTTCTC
1 TAGAGATGTGCCTATAGAAACTTAAGGAAAAGTTTTCTC
88627294 TAGAGATGTGCCTATAGAAACTTAAGGAAAAGTTTTCTC
1 TAGAGATGTGCCTATAGAAACTTAAGGAAAAGTTTTCTC
88627333 CAGAAATCTG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.31
Consensus pattern (39 bp):
TAGAGATGTGCCTATAGAAACTTAAGGAAAAGTTTTCTC
Found at i:88631354 original size:27 final size:27
Alignment explanation
Indices: 88631324--88631469 Score: 175
Period size: 27 Copynumber: 5.4 Consensus size: 27
88631314 TGGATAAGTT
* *
88631324 GTAGAATTATCTAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
* *
88631351 GTAGAATTACCGAAATACCCCTGTAGA
1 GTAGAATTACCGAAATACCCTTGTAGG
* *
88631378 ATAGAATTATCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
* * *
88631405 GTAGAAATACCGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
* * *
88631432 GTAGAATTACCGAGATATCCTTGTGGG
1 GTAGAATTACCGAAATACCCTTGTAGG
*
88631459 GTAAAATTACC
1 GTAGAATTACC
88631470 ACTTTTCCCC
Statistics
Matches: 99, Mismatches: 20, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 99 1.00
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.27
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCTTGTAGG
Found at i:88631400 original size:54 final size:54
Alignment explanation
Indices: 88631325--88631469 Score: 200
Period size: 54 Copynumber: 2.7 Consensus size: 54
88631315 GGATAAGTTG
* *
88631325 TAGAATTATCTAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGAA
1 TAGAATTATCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAGAA
* **
88631379 TAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTATAGGG
1 TAGAATTATCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAGAA
* * * * *
88631433 TAGAATTACCGAGATATCCTTGTGGGGTAAAATTACC
1 TAGAATTATCGAAATACCCTTGTAGGGTAGAATTACC
88631470 ACTTTTCCCC
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 80 1.00
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (54 bp):
TAGAATTATCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAGAA
Found at i:88632226 original size:31 final size:32
Alignment explanation
Indices: 88632188--88632248 Score: 88
Period size: 31 Copynumber: 1.9 Consensus size: 32
88632178 CTCGCTGCAA
* *
88632188 TCTGGTGGCTTTGCAAC-ATATATATATCTTT
1 TCTGGTGGCCTAGCAACAATATATATATCTTT
*
88632219 TCTGGTGGCCTAGCAACAATATCTATATCT
1 TCTGGTGGCCTAGCAACAATATATATATCT
88632249 GGTGGCTTCA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 15 0.58
32 11 0.42
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (32 bp):
TCTGGTGGCCTAGCAACAATATATATATCTTT
Found at i:88634664 original size:20 final size:20
Alignment explanation
Indices: 88634636--88634689 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
88634626 TTGTTCGAGA
*
88634636 TTTGCACTTCAGTGCCCCTG
1 TTTGTACTTCAGTGCCCCTG
88634656 TTTGTACTTCAGTGCCCCTG
1 TTTGTACTTCAGTGCCCCTG
88634676 TTTGTACTTCAGTG
1 TTTGTACTTCAGTG
88634690 TCCTTGTATA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.11, C:0.28, G:0.20, T:0.41
Consensus pattern (20 bp):
TTTGTACTTCAGTGCCCCTG
Found at i:88639614 original size:45 final size:45
Alignment explanation
Indices: 88639564--88640001 Score: 171
Period size: 47 Copynumber: 9.0 Consensus size: 45
88639554 ATTGACGGTT
88639564 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGGC
* * * ** * * **
88639609 AAGGATCCCGTGTAAGACCATGTCAAAACATGGCATCAGCATTGATT
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTA-AG-GC
** * ** * *
88639656 AAGGACT-CCATGTAAGACCACATGAAGATGTGGCCTTGGCACTAAGAC
1 AAGGA-TACCATGTAAGACCATGTCAAGACATGGCATTGG---TAAGGC
* *** *
88639704 AAGGATACTATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGAC
1 AAGGATACCATGTAAGACCATGTCAAG-ACATGGCA-TTGGTAAGGC
* *** **
88639751 AAAGATACCATGTAA-ACCATGTTGGGAACATGGCATTTGGTAAGAT
1 AAGGATACCATGTAAGACCATGTCAAG-ACATGGCA-TTGGTAAGGC
* * * *
88639797 AAGGATATCATGTAAGACCATGCCAAGGCATGGCGTTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTG----G-----TAAGGC
* * *
88639851 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCA-T--TG-G------TAAGG-C
* * *
88639907 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGATTTCATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATT-G-G------TAAGGC
*
88639959 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAG
88640002 TTCAAAAAGA
Statistics
Matches: 300, Mismatches: 67, Indels: 52
0.72 0.16 0.12
Matches are distributed among these distances:
45 42 0.14
46 49 0.16
47 54 0.18
48 20 0.07
49 7 0.02
50 5 0.02
51 1 0.00
52 6 0.02
53 37 0.12
54 38 0.13
55 35 0.12
56 4 0.01
57 2 0.01
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (45 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGGC
Found at i:88639785 original size:46 final size:47
Alignment explanation
Indices: 88639698--88639818 Score: 190
Period size: 46 Copynumber: 2.6 Consensus size: 47
88639688 GCCTTGGCAC
* *
88639698 TAAGACAAGGATACTATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTGGGAACATGGCATTTGG
*
88639745 TAAGACAAAGATACCATGTAA-ACCATGTTGGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTGGGAACATGGCATTTGG
* *
88639791 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
88639819 CCAAGGCATG
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
46 42 0.63
47 25 0.37
ACGTcount: A:0.37, C:0.13, G:0.24, T:0.26
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTGGGAACATGGCATTTGG
Found at i:88639926 original size:55 final size:54
Alignment explanation
Indices: 88639797--88639993 Score: 245
Period size: 54 Copynumber: 3.6 Consensus size: 54
88639787 TTGGTAAGAT
* * * *
88639797 AAGGATATCATGTAAGACCATGCCAAGGCATGGCGTTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * * *
88639851 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGG-C
* * * *
88639907 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGATTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
*
88639959 AAGGATACCATGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
88639994 ATGGTAAGTT
Statistics
Matches: 123, Mismatches: 17, Indels: 7
0.84 0.12 0.05
Matches are distributed among these distances:
52 4 0.03
53 33 0.27
54 41 0.33
55 41 0.33
56 4 0.03
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:88645272 original size:31 final size:30
Alignment explanation
Indices: 88645215--88645275 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 30
88645205 TTTCTGAGCC
*
88645215 TAGGGGCAAAATCAAAATTCTGCAAAGTTT
1 TAGGGGCAAAATCAAAATTCTCCAAAGTTT
** *
88645245 TAGGGGCAAAATTGTAAATTTTCCAAAGTTT
1 TAGGGGCAAAA-TCAAAATTCTCCAAAGTTT
88645276 GAGTTAGGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 11 0.42
31 15 0.58
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAATCAAAATTCTCCAAAGTTT
Found at i:88645876 original size:44 final size:44
Alignment explanation
Indices: 88645811--88645894 Score: 107
Period size: 44 Copynumber: 1.9 Consensus size: 44
88645801 TTGATAGCTC
* * *
88645811 AAAGTCCATGGTTGTACCATGGTAATTAAGGAAGAATTGATGGA
1 AAAGTCCATGGTTATAACATGGCAATTAAGGAAGAATTGATGGA
* *
88645855 AAAGTCCAT-GTTCATAACATGGCATTTAAGGATGAATTGA
1 AAAGTCCATGGTT-ATAACATGGCAATTAAGGAAGAATTGA
88645895 CGGTTAAGGA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
43 3 0.09
44 31 0.91
ACGTcount: A:0.37, C:0.11, G:0.24, T:0.29
Consensus pattern (44 bp):
AAAGTCCATGGTTATAACATGGCAATTAAGGAAGAATTGATGGA
Found at i:88647412 original size:46 final size:46
Alignment explanation
Indices: 88647362--88647537 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
88647352 TGGTTGAGCA
*
88647362 TCCGAACTCGTTGAGTTCAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
88647408 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
88647453 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
88647501 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
88647538 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.57
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:88647518 original size:93 final size:93
Alignment explanation
Indices: 88647359--88647530 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
88647349 GGATGGTTGA
* * *
88647359 GCATCCGAACTCGTTGAGTTCAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTCAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
88647424 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
88647452 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTCAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
88647517 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
88647531 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTCAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:88648956 original size:53 final size:53
Alignment explanation
Indices: 88648845--88648982 Score: 179
Period size: 53 Copynumber: 2.6 Consensus size: 53
88648835 GTTACAAAGG
* * *
88648845 CCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCCCATGTAAGA
1 CCATGTCAAGACATGGCATTGGTGAGTT-C-ATAAGGCAAAGGTACCACGTAAGA
* *
88648900 CCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC-AAGGATACCACGTAAGA
1 CCATGTCAAGACATGGCATTGGTGAGTTCATAAGGCAAAGG-TACCACGTAAGA
* *
88648953 CCATGTCAAGACATGGCAATGGTAAGTTCA
1 CCATGTCAAGACATGGCATTGGTGAGTTCA
88648983 AAAAGGAAAA
Statistics
Matches: 73, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
52 4 0.05
53 43 0.59
54 1 0.01
55 25 0.34
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (53 bp):
CCATGTCAAGACATGGCATTGGTGAGTTCATAAGGCAAAGGTACCACGTAAGA
Found at i:88650204 original size:46 final size:45
Alignment explanation
Indices: 88650131--88650272 Score: 155
Period size: 46 Copynumber: 3.2 Consensus size: 45
88650121 TAACCATGGA
* * *
88650131 CTTATTAATTTTCCATCGTGTTGCCATAGTGTCTTTCAACTAT-GAT
1 CTTATTCATTTTTCGTCGTGTT-CCATAGTGTCTTTCAACTATAG-T
* * **
88650177 CTTATTCATTTTTCGTCGCGTTACCATAGTGTCTTTTATTTATAGT
1 CTTATTCATTTTTCGTCGTGTT-CCATAGTGTCTTTCAACTATAGT
**
88650223 CTTATTCATTTTTCGTCGTGTT--GGAGTGTCTTTCAACTATAGT
1 CTTATTCATTTTTCGTCGTGTTCCATAGTGTCTTTCAACTATAGT
88650266 CTTATTC
1 CTTATTC
88650273 GTTTGATTCA
Statistics
Matches: 81, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
43 23 0.28
46 57 0.70
47 1 0.01
ACGTcount: A:0.18, C:0.18, G:0.14, T:0.49
Consensus pattern (45 bp):
CTTATTCATTTTTCGTCGTGTTCCATAGTGTCTTTCAACTATAGT
Found at i:88650332 original size:45 final size:45
Alignment explanation
Indices: 88650283--88650408 Score: 155
Period size: 45 Copynumber: 2.8 Consensus size: 45
88650273 GTTTGATTCA
* * * *
88650283 TGATGCCATAGCATCTTTCAGCTATGTTCTTGCTCGATAAAA-CTG
1 TGATGCCATAACATCTTCCAGCTATGGTCTTACTCGATAAAATC-G
* * *
88650328 TGATGCCATAACATCTTCCAGCTATGGTATTACTTGATAGAATCG
1 TGATGCCATAACATCTTCCAGCTATGGTCTTACTCGATAAAATCG
* *
88650373 TGATGCCATAACGTCTTGCAGCTATGGTCTTACTCG
1 TGATGCCATAACATCTTCCAGCTATGGTCTTACTCG
88650409 TTTCTGGTAT
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
45 68 0.99
46 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (45 bp):
TGATGCCATAACATCTTCCAGCTATGGTCTTACTCGATAAAATCG
Found at i:88652759 original size:12 final size:12
Alignment explanation
Indices: 88652742--88652767 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
88652732 CATTCCGAAG
88652742 TATATATATACA
1 TATATATATACA
88652754 TATATATATACA
1 TATATATATACA
88652766 TA
1 TA
88652768 AGTATGCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
TATATATATACA
Found at i:88653280 original size:27 final size:27
Alignment explanation
Indices: 88653249--88653426 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
88653239 TAAATTGTAC
88653249 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
88653276 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
88653302 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
88653330 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
88653358 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
88653385 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
88653412 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
88653427 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:88653363 original size:82 final size:81
Alignment explanation
Indices: 88653250--88653405 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
88653240 AAATTGTACA
* *
88653250 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
88653314 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
88653331 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
88653396 TGCGAGTTGA
65 TGCGAATTGA
88653406 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:88653417 original size:82 final size:81
Alignment explanation
Indices: 88653246--88653426 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
88653236 GATTAAATTG
* *
88653246 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
88653311 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
88653327 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
88653391 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
88653409 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
88653427 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:88653665 original size:76 final size:76
Alignment explanation
Indices: 88653573--88653722 Score: 291
Period size: 76 Copynumber: 2.0 Consensus size: 76
88653563 TAAGTTTGAA
88653573 CCTATGTGACAAATATACTTGAAGTCATGTACATAAAATTTATCGTAGGATGGGTGAAAGGCCGT
1 CCTATGTGACAAATATACTTGAAGTCATGTACATAAAATTTATCGTAGGATGGGTGAAAGGCCGT
88653638 TTAGTCGTTTG
66 TTAGTCGTTTG
*
88653649 CCTATGTGACAAATATACTTGAAGTCATGTACGTAAAATTTATCGTAGGATGGGTGAAAGGCCGT
1 CCTATGTGACAAATATACTTGAAGTCATGTACATAAAATTTATCGTAGGATGGGTGAAAGGCCGT
88653714 TTAGTCGTT
66 TTAGTCGTT
88653723 AAATTGTAAC
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
76 73 1.00
ACGTcount: A:0.30, C:0.13, G:0.24, T:0.33
Consensus pattern (76 bp):
CCTATGTGACAAATATACTTGAAGTCATGTACATAAAATTTATCGTAGGATGGGTGAAAGGCCGT
TTAGTCGTTTG
Found at i:88654331 original size:47 final size:47
Alignment explanation
Indices: 88654262--88654351 Score: 171
Period size: 47 Copynumber: 1.9 Consensus size: 47
88654252 CACTAAAAAT
*
88654262 AGTAGGAGTGGAATTAATTGATGAATAAATTATGTAATCGAAGAAAG
1 AGTAGAAGTGGAATTAATTGATGAATAAATTATGTAATCGAAGAAAG
88654309 AGTAGAAGTGGAATTAATTGATGAATAAATTATGTAATCGAAG
1 AGTAGAAGTGGAATTAATTGATGAATAAATTATGTAATCGAAG
88654352 CTCGATGAGT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.44, C:0.02, G:0.24, T:0.29
Consensus pattern (47 bp):
AGTAGAAGTGGAATTAATTGATGAATAAATTATGTAATCGAAGAAAG
Found at i:88657181 original size:26 final size:26
Alignment explanation
Indices: 88657146--88657196 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
88657136 TCATACATCC
88657146 CATAAGGGCATAATAGTCACTTTACCT
1 CATAAGGGCATAATAGTCA-TTTACCT
88657173 CATAA-GGCATAATAGTCATTTACC
1 CATAAGGGCATAATAGTCATTTACC
88657197 AATATTGTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 6 0.25
26 13 0.54
27 5 0.21
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (26 bp):
CATAAGGGCATAATAGTCATTTACCT
Found at i:88675630 original size:29 final size:29
Alignment explanation
Indices: 88675595--88675653 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
88675585 GCATATCATG
*
88675595 TACAATACAGTATTAATCAATCATGCAGT
1 TACAATACAATATTAATCAATCATGCAGT
88675624 TACAATACAATATTAATCAATCATGCAGT
1 TACAATACAATATTAATCAATCATGCAGT
88675653 T
1 T
88675654 TAGCCAATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.42, C:0.17, G:0.08, T:0.32
Consensus pattern (29 bp):
TACAATACAATATTAATCAATCATGCAGT
Found at i:88689958 original size:29 final size:28
Alignment explanation
Indices: 88689878--88689970 Score: 89
Period size: 29 Copynumber: 3.2 Consensus size: 28
88689868 ATCCATACTT
* * * *
88689878 ATTCATTTGGCCCCTTTAGGCCTAATCTC
1 ATTCATATGG-CCCATTAGGCCCAATCAC
*
88689907 CTTCATATGGCCCATTAGGCCCAAATCAC
1 ATTCATATGGCCCATTAGGCCC-AATCAC
* *
88689936 TTTCATATGGCCCA-TCGGCCCCAATCAC
1 ATTCATATGGCCCATTAGG-CCCAATCAC
88689964 ATTCATA
1 ATTCATA
88689971 GTCATGCAAT
Statistics
Matches: 54, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 25 0.46
29 29 0.54
ACGTcount: A:0.24, C:0.33, G:0.13, T:0.30
Consensus pattern (28 bp):
ATTCATATGGCCCATTAGGCCCAATCAC
Found at i:88689968 original size:28 final size:29
Alignment explanation
Indices: 88689908--88689970 Score: 92
Period size: 28 Copynumber: 2.2 Consensus size: 29
88689898 CCTAATCTCC
*
88689908 TTCATATGGCCCATTAGGCCCAAATCACT
1 TTCATATGGCCCATTAGGCCCAAATCACA
* *
88689937 TTCATATGGCCCA-TCGGCCCCAATCACA
1 TTCATATGGCCCATTAGGCCCAAATCACA
88689965 TTCATA
1 TTCATA
88689971 GTCATGCAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
28 18 0.58
29 13 0.42
ACGTcount: A:0.27, C:0.33, G:0.13, T:0.27
Consensus pattern (29 bp):
TTCATATGGCCCATTAGGCCCAAATCACA
Found at i:88694537 original size:28 final size:28
Alignment explanation
Indices: 88694464--88694564 Score: 121
Period size: 28 Copynumber: 3.6 Consensus size: 28
88694454 CCCCTTTAGG
* * *
88694464 CCCAATCTCCTTCATATGGCCCATTAGGC
1 CCCAATCACATTCATATGGCCCA-TCGGC
* * * * *
88694493 CCAAATCACTTTTATATGACCCATCGAC
1 CCCAATCACATTCATATGGCCCATCGGC
88694521 CCCAATCACATTCATATGGCCCATCGGC
1 CCCAATCACATTCATATGGCCCATCGGC
88694549 CCCAATCACATTCATA
1 CCCAATCACATTCATA
88694565 GTCATGCAAT
Statistics
Matches: 60, Mismatches: 12, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
28 42 0.70
29 18 0.30
ACGTcount: A:0.28, C:0.37, G:0.10, T:0.26
Consensus pattern (28 bp):
CCCAATCACATTCATATGGCCCATCGGC
Found at i:88712700 original size:21 final size:21
Alignment explanation
Indices: 88712658--88712697 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
88712648 TCTCCAACCA
* *
88712658 TAAACATGCATAATCTACAAT
1 TAAACATGCAAAATCCACAAT
88712679 TAAACAT-CAAAATCCACAA
1 TAAACATGCAAAATCCACAA
88712698 ATTTACAACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.53, C:0.23, G:0.03, T:0.23
Consensus pattern (21 bp):
TAAACATGCAAAATCCACAAT
Found at i:88714839 original size:43 final size:43
Alignment explanation
Indices: 88714791--88714993 Score: 291
Period size: 43 Copynumber: 4.7 Consensus size: 43
88714781 GCCACAAAAA
* *
88714791 TTAGCGGTGCTTCTACAAAAAACGCCGCTAAAGAACAGGACCT
1 TTAGCGGCGCTTCTACAAAAAACGCCGCTAAAGACCAGGACCT
88714834 TTAGCGGCGCTTCTACAAAAAACGCCGCTAAAGACCAGGACCT
1 TTAGCGGCGCTTCTACAAAAAACGCCGCTAAAGACCAGGACCT
* * *
88714877 TTAGCGGCGCTTCTTA-AAGAAATGCCGCTAAAGTCCAGGACCT
1 TTAGCGGCGCTTC-TACAAAAAACGCCGCTAAAGACCAGGACCT
* *
88714920 TTAGCGGCGCTTCTTCAAAAAACGCCGCTAAAGACCAGGATCT
1 TTAGCGGCGCTTCTACAAAAAACGCCGCTAAAGACCAGGACCT
* * **
88714963 TTAGCGGCACTTTTTTAAAAAACGCCGCTAA
1 TTAGCGGCGCTTCTACAAAAAACGCCGCTAA
88714994 TTTGCCCAGT
Statistics
Matches: 145, Mismatches: 13, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
42 1 0.01
43 142 0.98
44 2 0.01
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.21
Consensus pattern (43 bp):
TTAGCGGCGCTTCTACAAAAAACGCCGCTAAAGACCAGGACCT
Found at i:88715311 original size:21 final size:21
Alignment explanation
Indices: 88715287--88715334 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
88715277 TCCTGTTCTG
88715287 CTCCGCCTCCCTCGCTGCTGC
1 CTCCGCCTCCCTCGCTGCTGC
*
88715308 CTCCGCCTCCCTCGTTGCTGC
1 CTCCGCCTCCCTCGCTGCTGC
88715329 CTCCGC
1 CTCCGC
88715335 TCTAAGTTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.00, C:0.56, G:0.19, T:0.25
Consensus pattern (21 bp):
CTCCGCCTCCCTCGCTGCTGC
Found at i:88720894 original size:9 final size:9
Alignment explanation
Indices: 88720880--88721046 Score: 145
Period size: 9 Copynumber: 17.6 Consensus size: 9
88720870 ATGTATTAGT
88720880 TAAGTTATG
1 TAAGTTATG
88720889 TAAGTTGTTATG
1 TAA---GTTATG
*
88720901 TACGTTATG
1 TAAGTTATG
*
88720910 TGAGTTATG
1 TAAGTTATG
*
88720919 TAAATTATG
1 TAAGTTATG
88720928 TAAGTTATG
1 TAAGTTATG
*
88720937 TGAGTTATG
1 TAAGTTATG
88720946 TAAGTTTTTATG
1 TAAG---TTATG
*
88720958 TAAATTATG
1 TAAGTTATG
88720967 TAAGTTATG
1 TAAGTTATG
*
88720976 TGAGTTATG
1 TAAGTTATG
88720985 TAAGTTGTTATG
1 TAA---GTTATG
*
88720997 TAAATTATG
1 TAAGTTATG
*
88721006 TAAGTTATA
1 TAAGTTATG
* *
88721015 TGAGTTATT
1 TAAGTTATG
88721024 TAAGTTATG
1 TAAGTTATG
* *
88721033 TAATTTATT
1 TAAGTTATG
88721042 TAAGT
1 TAAGT
88721047 AATGATCAAT
Statistics
Matches: 127, Mismatches: 22, Indels: 18
0.76 0.13 0.11
Matches are distributed among these distances:
9 102 0.80
12 25 0.20
ACGTcount: A:0.31, C:0.01, G:0.20, T:0.48
Consensus pattern (9 bp):
TAAGTTATG
Found at i:88720927 original size:39 final size:38
Alignment explanation
Indices: 88720884--88721046 Score: 160
Period size: 39 Copynumber: 4.3 Consensus size: 38
88720874 ATTAGTTAAG
*
88720884 TTATGTAAGTTGTTATGT-ACGTTATGTGAGTTATGTAAA
1 TTATGTAAG-TGTTATGTGA-GTTATGTAAGTTATGTAAA
88720923 TTATGTAA--GTTATGTGAGTTATGTAAGTTTTTATGTAAA
1 TTATGTAAGTGTTATGTGAGTTATGTAAG---TTATGTAAA
88720962 TTATGTAA--GTTATGTGAGTTATGTAAGTTGTTATGTAAA
1 TTATGTAAGTGTTATGTGAGTTATGTAA---GTTATGTAAA
* * *
88721001 TTATGTAA--GTTATATGAGTTATTTAAGTTATGTAAT
1 TTATGTAAGTGTTATGTGAGTTATGTAAGTTATGTAAA
*
88721037 TTATTTAAGT
1 TTATGTAAGT
88721047 AATGATCAAT
Statistics
Matches: 110, Mismatches: 5, Indels: 19
0.82 0.04 0.14
Matches are distributed among these distances:
36 32 0.29
37 1 0.01
39 76 0.69
42 1 0.01
ACGTcount: A:0.31, C:0.01, G:0.20, T:0.48
Consensus pattern (38 bp):
TTATGTAAGTGTTATGTGAGTTATGTAAGTTATGTAAA
Found at i:88720957 original size:48 final size:43
Alignment explanation
Indices: 88720895--88721034 Score: 179
Period size: 39 Copynumber: 3.4 Consensus size: 43
88720885 TATGTAAGTT
*
88720895 GTTATGTACGTTATGTGAGTTATGTAAATTATGTAAGTTATGTGA
1 GTTATGTAAGTTATGT-A-TTATGTAAATTATGTAAGTTATGTGA
88720940 GTTATGTAAG-T-T-T-TTATGTAAATTATGTAAGTTATGTGA
1 GTTATGTAAGTTATGTATTATGTAAATTATGTAAGTTATGTGA
*
88720979 GTTATGTAAG-T-TG--TTATGTAAATTATGTAAGTTATATGA
1 GTTATGTAAGTTATGTATTATGTAAATTATGTAAGTTATGTGA
*
88721018 GTTATTTAAGTTATGTA
1 GTTATGTAAGTTATGTA
88721035 ATTTATTTAA
Statistics
Matches: 87, Mismatches: 3, Indels: 12
0.85 0.03 0.12
Matches are distributed among these distances:
39 72 0.83
40 1 0.01
41 2 0.02
42 1 0.01
43 1 0.01
44 1 0.01
45 9 0.10
ACGTcount: A:0.31, C:0.01, G:0.21, T:0.47
Consensus pattern (43 bp):
GTTATGTAAGTTATGTATTATGTAAATTATGTAAGTTATGTGA
Found at i:88721035 original size:48 final size:48
Alignment explanation
Indices: 88720880--88721035 Score: 170
Period size: 48 Copynumber: 3.2 Consensus size: 48
88720870 ATGTATTAGT
** * *
88720880 TAAGTTATGTAAGTTGTTATGTACGTTATGTGAGTTATGTAAATTATG
1 TAAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATGTAAGTTATG
* * * ** *
88720928 TAAGTTATGTGAGTTATGTAAGT-TTTTATGTAAATTATGTAAGTTATG
1 TAAGTTATGTAAGTTGT-TATGTAAATTATGTAAGTTATGTAAGTTATG
* * * *
88720976 TGAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATGAGTTATT
1 TAAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATGTAAGTTATG
88721024 TAAGTTATGTAA
1 TAAGTTATGTAA
88721036 TTTATTTAAG
Statistics
Matches: 87, Mismatches: 19, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
47 4 0.05
48 79 0.91
49 4 0.05
ACGTcount: A:0.31, C:0.01, G:0.21, T:0.47
Consensus pattern (48 bp):
TAAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATGTAAGTTATG
Found at i:88721649 original size:241 final size:241
Alignment explanation
Indices: 88721226--88721712 Score: 920
Period size: 241 Copynumber: 2.0 Consensus size: 241
88721216 TTAAGGTTAT
*
88721226 ATAAATATTCAATAGTAAATGAGATCGATCGAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
1 ATAAATATTCAATAGTAAATGAGATCGATAGAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
88721291 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
66 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
88721356 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
131 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
88721421 GGTCAGCTATTGTTGCAATTTTAATGAACAAGCAAGCTACATGGTA
196 GGTCAGCTATTGTTGCAATTTTAATGAACAAGCAAGCTACATGGTA
* *
88721467 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGAT
1 ATAAATATTCAATAGTAAATGAGATCGATAGAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
88721532 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
66 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
88721597 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
131 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
* * *
88721662 GGTCAGTTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTA
196 GGTCAGCTATTGTTGCAATTTTAATGAACAAGCAAGCTACATGGTA
88721708 ATAAA
1 ATAAA
88721713 ATTAATTCAT
Statistics
Matches: 240, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
241 240 1.00
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34
Consensus pattern (241 bp):
ATAAATATTCAATAGTAAATGAGATCGATAGAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
GGTCAGCTATTGTTGCAATTTTAATGAACAAGCAAGCTACATGGTA
Found at i:88725576 original size:48 final size:48
Alignment explanation
Indices: 88725474--88725607 Score: 182
Period size: 48 Copynumber: 2.8 Consensus size: 48
88725464 GGGTTATTGT
**
88725474 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGAGACGA
* * * *
88725522 GTGCTAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCACAGATATGTGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGAGA--CGA
88725570 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
88725608 CTTGATTTCA
Statistics
Matches: 74, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
46 12 0.16
47 13 0.18
48 28 0.38
49 13 0.18
50 8 0.11
ACGTcount: A:0.26, C:0.18, G:0.33, T:0.23
Consensus pattern (48 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGAGACGA
Found at i:88725630 original size:49 final size:47
Alignment explanation
Indices: 88725577--88725695 Score: 150
Period size: 49 Copynumber: 2.5 Consensus size: 47
88725567 TGAGAGCTAG
* *
88725577 TGTAAGACCATGTCTGGGACATGGCATCGGCCTTGATTTCAAT-AGTCAA
1 TGTAAGACCATGTCTGGGACATGGCATC-GACTTGA--TCAATGAGCCAA
* **
88725626 TGTAAGACCATGTCTGGGCCATGGCATCGACTTGATGGATGAGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGACTTGATCAATGAGCCAA
*
88725673 TGTAAAACCATGTCTGGGACATG
1 TGTAAGACCATGTCTGGGACATG
88725696 CTATTGGCAT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
46 3 0.05
47 26 0.42
48 6 0.10
49 27 0.44
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (47 bp):
TGTAAGACCATGTCTGGGACATGGCATCGACTTGATCAATGAGCCAA
Found at i:88730055 original size:52 final size:52
Alignment explanation
Indices: 88729985--88730086 Score: 150
Period size: 52 Copynumber: 2.0 Consensus size: 52
88729975 TGCGCTTAGC
*
88729985 ACACTTAAACTCAGGTCTTTTTACATTAAAAATAATGCCCATGTCAATCAGT
1 ACACTTAAACTCAAGTCTTTTTACATTAAAAATAATGCCCATGTCAATCAGT
* * * * *
88730037 ACACTTGAACTTAAGTCTTTTTACATTGATAATAATGTCCATGTCAATCA
1 ACACTTAAACTCAAGTCTTTTTACATTAAAAATAATGCCCATGTCAATCA
88730087 AGCTAAAACT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 44 1.00
ACGTcount: A:0.35, C:0.20, G:0.10, T:0.35
Consensus pattern (52 bp):
ACACTTAAACTCAAGTCTTTTTACATTAAAAATAATGCCCATGTCAATCAGT
Found at i:88735712 original size:30 final size:30
Alignment explanation
Indices: 88735673--88735729 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
88735663 TTTTATAAGT
88735673 AATTAATATTT-AT-TACTTAAAAATATTTAA
1 AATTAATATTTCATATA-TT-AAAATATTTAA
*
88735703 AATTTATATTTCATATATTAAAATATT
1 AATTAATATTTCATATATTAAAATATT
88735730 AACAACAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
30 18 0.75
31 4 0.17
32 2 0.08
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (30 bp):
AATTAATATTTCATATATTAAAATATTTAA
Found at i:88744425 original size:40 final size:41
Alignment explanation
Indices: 88744351--88744441 Score: 121
Period size: 40 Copynumber: 2.2 Consensus size: 41
88744341 TAAATTCCAA
* * *
88744351 ATATAGCCAAAGCTATTTCGATCTCGCACACTAAGTGCCAT
1 ATATAACCAAAGCTATGTCGATATCGCACACTAAGTGCCAT
* *
88744392 ATATAACCGAAGCTATGTCGA-ATCGCACACTAAGTGTCAT
1 ATATAACCAAAGCTATGTCGATATCGCACACTAAGTGCCAT
*
88744432 ATACAACCAA
1 ATATAACCAA
88744442 TTTGTTGTCG
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
40 25 0.58
41 18 0.42
ACGTcount: A:0.36, C:0.25, G:0.14, T:0.24
Consensus pattern (41 bp):
ATATAACCAAAGCTATGTCGATATCGCACACTAAGTGCCAT
Found at i:88751629 original size:40 final size:40
Alignment explanation
Indices: 88751561--88751746 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
88751551 CGAGATCTCG
* * * ** *
88751561 CACACTAAATGCCGTACATAGTTGAAGCTATCTCAAATCA
1 CACACTAAGTGCCATATATAGCCGAAGCTATGTCAAATCA
* * * * * **
88751601 CACACTAAATGCCAAATATAGCCAAAGCTATTTTGATCTCA
1 CACACTAAGTGCCATATATAGCCGAAGCTA-TGTCAAATCA
* * * * *
88751642 GATACTAAGTGCCATATATGGCCGAAGCTATGTCGAATCG
1 CACACTAAGTGCCATATATAGCCGAAGCTATGTCAAATCA
** *
88751682 CACACTAAGTGCCATATATAGCCGAAGCTATGTTGAATCG
1 CACACTAAGTGCCATATATAGCCGAAGCTATGTCAAATCA
88751722 CACACTAAGTGCCATATATAGCCGA
1 CACACTAAGTGCCATATATAGCCGA
88751747 TTTGTTGTCG
Statistics
Matches: 119, Mismatches: 26, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
40 89 0.75
41 30 0.25
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.25
Consensus pattern (40 bp):
CACACTAAGTGCCATATATAGCCGAAGCTATGTCAAATCA
Found at i:88751689 original size:81 final size:80
Alignment explanation
Indices: 88751558--88751746 Score: 218
Period size: 81 Copynumber: 2.4 Consensus size: 80
88751548 ACTCGAGATC
* * * **
88751558 TCGCACACTAAATGCCGTACATAGTTGAAGCTATCTCAAATCACACACTAAATGCCAAATATAGC
1 TCGCACACTAAGTGCCATATATAGCCGAAGCTATCTCAAATCACACACTAAATGCCAAATATAGC
*
88751623 CAAAGCTATTTTG-A
66 CAAAGCTATGTTGAA
* * * * * * * *
88751637 TCTCAGATACTAAGTGCCATATATGGCCGAAGCTATGTCGAATCGCACACTAAGTGCCATATATA
1 TCGC--ACACTAAGTGCCATATATAGCCGAAGCTATCTCAAATCACACACTAAATGCCAAATATA
*
88751702 GCCGAAGCTATGTTGAA
64 GCCAAAGCTATGTTGAA
88751719 TCGCACACTAAGTGCCATATATAGCCGA
1 TCGCACACTAAGTGCCATATATAGCCGA
88751747 TTTGTTGTCG
Statistics
Matches: 89, Mismatches: 18, Indels: 5
0.79 0.16 0.04
Matches are distributed among these distances:
79 3 0.03
80 22 0.25
81 60 0.67
82 4 0.04
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (80 bp):
TCGCACACTAAGTGCCATATATAGCCGAAGCTATCTCAAATCACACACTAAATGCCAAATATAGC
CAAAGCTATGTTGAA
Found at i:88753767 original size:49 final size:48
Alignment explanation
Indices: 88753695--88753825 Score: 156
Period size: 49 Copynumber: 2.6 Consensus size: 48
88753685 TTGCAACTCA
**
88753695 TGAGAGCTTATTGATTCTTAGCTCGTATGAGCTTACCGATTGT-AGCTCG
1 TGAGAGCTTACAGATTC-TAGCTCGTATGAGCTTACCGATT-TAAGCTCG
*
88753744 TGAGAGCTTACAGATTCTCAGCTCGTATGTGCTTACCGATTTACAGCTCG
1 TGAGAGCTTACAGATTCT-AGCTCGTATGAGCTTACCGATTTA-AGCTCG
* * *
88753794 TGAGAGCATACCGATTCATAGCTCATATGAGC
1 TGAGAGCTTACAGATTC-TAGCTCGTATGAGC
88753826 ATACATGTAC
Statistics
Matches: 71, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
48 2 0.03
49 36 0.51
50 32 0.45
51 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (48 bp):
TGAGAGCTTACAGATTCTAGCTCGTATGAGCTTACCGATTTAAGCTCG
Found at i:88753817 original size:50 final size:48
Alignment explanation
Indices: 88753707--88753825 Score: 150
Period size: 50 Copynumber: 2.4 Consensus size: 48
88753697 AGAGCTTATT
*
88753707 GATTCTTAGCTCGTATGAGCTTACCGATTGTAGCTCGTGAGAGCTTACA
1 GATTC-TAGCTCGTATGAGCTTACCGATTGTAGCTCGTGAGAGCATACA
* *
88753756 GATTCTCAGCTCGTATGTGCTTACCGATT-TACAGCTCGTGAGAGCATACC
1 GATTCT-AGCTCGTATGAGCTTACCGATTGT--AGCTCGTGAGAGCATACA
*
88753806 GATTCATAGCTCATATGAGC
1 GATTC-TAGCTCGTATGAGC
88753826 ATACATGTAC
Statistics
Matches: 61, Mismatches: 5, Indels: 7
0.84 0.07 0.10
Matches are distributed among these distances:
48 2 0.03
49 26 0.43
50 32 0.52
51 1 0.02
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.31
Consensus pattern (48 bp):
GATTCTAGCTCGTATGAGCTTACCGATTGTAGCTCGTGAGAGCATACA
Found at i:88753829 original size:25 final size:25
Alignment explanation
Indices: 88753698--88753825 Score: 111
Period size: 25 Copynumber: 5.2 Consensus size: 25
88753688 CAACTCATGA
** *
88753698 GAGCTTATTGATTCTTAGCTCGTAT
1 GAGCTTACCGATTCATAGCTCGTAT
*
88753723 GAGCTTACCGATT-GTAGCTCGTGA-
1 GAGCTTACCGATTCATAGCTCGT-AT
*
88753747 GAGCTTACAGATTC-TCAGCTCGTAT
1 GAGCTTACCGATTCAT-AGCTCGTAT
* * *
88753772 GTGCTTACCGATTTACAGCTCGTGA-
1 GAGCTTACCGATTCATAGCTCGT-AT
* *
88753797 GAGCATACCGATTCATAGCTCATAT
1 GAGCTTACCGATTCATAGCTCGTAT
88753822 GAGC
1 GAGC
88753826 ATACATGTAC
Statistics
Matches: 83, Mismatches: 13, Indels: 14
0.75 0.12 0.13
Matches are distributed among these distances:
24 23 0.28
25 59 0.71
26 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.32
Consensus pattern (25 bp):
GAGCTTACCGATTCATAGCTCGTAT
Found at i:88757987 original size:6 final size:6
Alignment explanation
Indices: 88757978--88758043 Score: 98
Period size: 6 Copynumber: 11.2 Consensus size: 6
88757968 GAAGTTTAAG
* * *
88757978 AAATAA AAATAA ACATAA AAATAG AAATAA AAATAA AACTAA AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
88758026 AAATAA AAAT-A AAATAA A
1 AAATAA AAATAA AAATAA A
88758044 TGGACTCAAT
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
5 5 0.09
6 48 0.91
ACGTcount: A:0.79, C:0.03, G:0.02, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:88758003 original size:24 final size:23
Alignment explanation
Indices: 88757976--88758043 Score: 109
Period size: 24 Copynumber: 2.9 Consensus size: 23
88757966 AAGAAGTTTA
88757976 AGAAATAAAAATAAACATAAAAAT
1 AGAAATAAAAATAAA-ATAAAAAT
88758000 AGAAATAAAAATAAAACTAAAAAT
1 AGAAATAAAAATAAAA-TAAAAAT
*
88758024 AAAAATAAAAATAAAATAAA
1 AGAAATAAAAATAAAATAAA
88758044 TGGACTCAAT
Statistics
Matches: 42, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
23 5 0.12
24 37 0.88
ACGTcount: A:0.78, C:0.03, G:0.03, T:0.16
Consensus pattern (23 bp):
AGAAATAAAAATAAAATAAAAAT
Found at i:88772771 original size:11 final size:11
Alignment explanation
Indices: 88772755--88772785 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
88772745 AATCAAAATA
88772755 TTTATTTTATT
1 TTTATTTTATT
88772766 TTTATTTTATT
1 TTTATTTTATT
*
88772777 ATTATTTTA
1 TTTATTTTA
88772786 ATGTTTATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (11 bp):
TTTATTTTATT
Found at i:88773046 original size:17 final size:19
Alignment explanation
Indices: 88773024--88773060 Score: 60
Period size: 17 Copynumber: 2.1 Consensus size: 19
88773014 AGTTATTAAG
88773024 AGTTAATTT-AG-TAAATT
1 AGTTAATTTAAGTTAAATT
88773041 AGTTAATTTAAGTTAAATT
1 AGTTAATTTAAGTTAAATT
88773060 A
1 A
88773061 AAATAAAACA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 9 0.50
18 2 0.11
19 7 0.39
ACGTcount: A:0.43, C:0.00, G:0.11, T:0.46
Consensus pattern (19 bp):
AGTTAATTTAAGTTAAATT
Found at i:88778379 original size:40 final size:40
Alignment explanation
Indices: 88778335--88778446 Score: 181
Period size: 40 Copynumber: 2.8 Consensus size: 40
88778325 GGATATAGCT
*
88778335 ACTCGCTTAAATGCCTTCGGGACTTAGCCCGGAAATAGTA
1 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGAAATAGTA
* *
88778375 ACTCGCACAAATGCCTTCGGGACTTAGCCCGAAAATAGTA
1 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGAAATAGTA
88778415 ACTCG-TACAAATGCCTTCGGGACTTAGCCCGG
1 ACTCGCT-CAAATGCCTTCGGGACTTAGCCCGG
88778447 TTATCATCCG
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
40 66 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (40 bp):
ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGAAATAGTA
Found at i:88786579 original size:40 final size:40
Alignment explanation
Indices: 88786543--88787006 Score: 910
Period size: 40 Copynumber: 11.6 Consensus size: 40
88786533 CTACTCGCTT
88786543 AAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCAC
88786583 AAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCAC
88786623 AAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCAC
88786663 AAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCAC
88786703 AAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCAC
88786743 AAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCAC
88786783 AAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCAC
88786823 AAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCAC
88786863 AAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCAC
88786903 AAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCAC
* *
88786943 AAATGCCTTCGGGACTTAGCCCGAAAATAGTAACTCGTAC
1 AAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCAC
88786983 AAATGCCTTCGGGACTTAGCCCGG
1 AAATGCCTTCGGGACTTAGCCCGG
88787007 TTATCATCCG
Statistics
Matches: 421, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 421 1.00
ACGTcount: A:0.30, C:0.27, G:0.23, T:0.20
Consensus pattern (40 bp):
AAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCAC
Found at i:88791937 original size:24 final size:24
Alignment explanation
Indices: 88791905--88791975 Score: 142
Period size: 24 Copynumber: 3.0 Consensus size: 24
88791895 ACCTCTTTTT
88791905 GAGTGAACCGTTCAAACCAAGCTC
1 GAGTGAACCGTTCAAACCAAGCTC
88791929 GAGTGAACCGTTCAAACCAAGCTC
1 GAGTGAACCGTTCAAACCAAGCTC
88791953 GAGTGAACCGTTCAAACCAAGCT
1 GAGTGAACCGTTCAAACCAAGCT
88791976 TAAGGGGTCT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.34, C:0.28, G:0.21, T:0.17
Consensus pattern (24 bp):
GAGTGAACCGTTCAAACCAAGCTC
Found at i:88794935 original size:37 final size:37
Alignment explanation
Indices: 88794885--88794963 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
88794875 TTATTACGAA
* *
88794885 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
88794922 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
88794959 GTCTT
1 GTCTT
88794964 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Done.