Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 268 of 284
Found at i:90074149 original size:16 final size:16
Alignment explanation
Indices: 90074128--90074158 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
90074118 ATAAATTTGA
90074128 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
90074144 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
90074159 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:90076058 original size:46 final size:45
Alignment explanation
Indices: 90076005--90076212 Score: 152
Period size: 46 Copynumber: 4.5 Consensus size: 45
90075995 GGGTGATTGT
* *
90076005 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACA-GACGA
* * ** *
90076051 GAGCTAGTTTAAGACCATGTTTGGGACATGGCATTAG-TATCAAGACGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-C-AGACGA
* * * *
90076099 GTGCTAGTGTAAGACATGTTTGGGGCATGCATCGGCCTCGAGACGTA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-AGACG-A
* * * * *
90076146 -AGCCAGTGTAAGACATGTCTAGGACATACATCGGCTACGAGATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-AGACGA
*
90076191 TAG-TCAGTGTAAGACCATGTCT
1 GAGCT-AGTGTAAGA-CATGTCT
90076213 AGGATATGAC
Statistics
Matches: 128, Mismatches: 25, Indels: 17
0.75 0.15 0.10
Matches are distributed among these distances:
45 1 0.01
46 70 0.55
47 35 0.27
48 21 0.16
49 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.25
Consensus pattern (45 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAGACGA
Found at i:90076235 original size:47 final size:48
Alignment explanation
Indices: 90076146--90076273 Score: 156
Period size: 47 Copynumber: 2.7 Consensus size: 48
90076136 TCGAGACGTA
**
90076146 AGCCAGTGTAAGA-CATGTCTAGGACAT-ACATCGGCTACGAGATGAT-
1 AGCCAGTGTAAGACCATGTCTAGGACATGACATCAACTACGAGAT-ATG
* * *
90076192 AGTCAGTGTAAGACCATGTCTAGGATATGACATCAACT-TGAGATATG
1 AGCCAGTGTAAGACCATGTCTAGGACATGACATCAACTACGAGATATG
* *
90076239 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCA
1 AGCCAGTGTAAGACCATGTCTAGGACATGACATCA
90076274 GCACCTCACC
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
46 14 0.20
47 49 0.70
48 7 0.10
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.23
Consensus pattern (48 bp):
AGCCAGTGTAAGACCATGTCTAGGACATGACATCAACTACGAGATATG
Found at i:90077456 original size:21 final size:21
Alignment explanation
Indices: 90077417--90077456 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
90077407 TCGAAATGGT
**
90077417 CACACAGGCGTGTTTCCCTCC
1 CACACAGGCGTGTGCCCCTCC
*
90077438 CACACGGGCGTGTGCCCCT
1 CACACAGGCGTGTGCCCCT
90077457 GTGTCAAGTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.12, C:0.42, G:0.25, T:0.20
Consensus pattern (21 bp):
CACACAGGCGTGTGCCCCTCC
Found at i:90084403 original size:48 final size:50
Alignment explanation
Indices: 90084282--90084611 Score: 196
Period size: 48 Copynumber: 6.8 Consensus size: 50
90084272 TAAGATGCTG
* * *
90084282 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCGATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGAGGCCA
* * * * * *
90084332 ATGACATGTTCCAAACATAGTCTTACACTAGC-C-CATATGTCGAGGGCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGAGGCCA
* * * *
90084380 ATGCCATGTCCCAGGCATGGTCTTACACTAGCTCTCGTATA--AATGCCGA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGAGGCC-A
* * * * * * * * *
90084429 ATGCCATGTTCCAAAGATGGTCTTACACTGGCTCTCACATA--AATGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGAGGCCA
* * * * * * * * *
90084477 GTGCCATGTTCTAAACATGGTCTTACA-TTGCCTCTCATATA--AATGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTCATATATCGAGGCCA
* * * * * * *
90084525 ATGCCATGTTCCAAACATGGTCTTACA-TTG-GCTCACATATCGAGACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGAGGCCA
* **
90084573 ATACCATGTCTTAGACATGGTCTTACACTAGCTCTCATA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATA
90084612 ACCCTAGTAT
Statistics
Matches: 223, Mismatches: 49, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
46 7 0.03
47 2 0.01
48 134 0.60
49 44 0.20
50 36 0.16
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.29
Consensus pattern (50 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGAGGCCA
Found at i:90084580 original size:96 final size:94
Alignment explanation
Indices: 90084281--90084611 Score: 295
Period size: 96 Copynumber: 3.4 Consensus size: 94
90084271 GTAAGATGCT
* * * * *
90084281 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCGATGCCGATGACATGTTCCAA
1 GATGCCATGTTCTAGACATGGTCTTACA-TTGCTCTCATATA--AATGCCGATGCCATGTTCCAA
* * * * * *
90084346 ACATAGTCTTACACTAGCCCATATGTCGAGGGC
63 ACATGGTCTTACACTGGCTCACATATCGA-GCC
* * * * * *
90084379 AATGCCATGTCCCAGGCATGGTCTTACACTAGCTCTCGTATAAATGCCGAATGCCATGTTCCAAA
1 GATGCCATGTTCTAGACATGGTCTTACA-TTGCTCTCATATAAATGCCG-ATGCCATGTTCCAAA
* * * ** *
90084444 GATGGTCTTACACTGGCTCTCACATAAATGTC
64 CATGGTCTTACACTGGCTCACATATCGA-GCC
* * *
90084476 GGTGCCATGTTCTAAACATGGTCTTACATTGCCTCTCATATAAATGTCGATGCCATGTTCCAAAC
1 GATGCCATGTTCTAGACATGGTCTTACATTG-CTCTCATATAAATGCCGATGCCATGTTCCAAAC
*
90084541 ATGGTCTTACATTGGCTCACATATCGAGACC
65 ATGGTCTTACACTGGCTCACATATCGAG-CC
* *
90084572 GATACCATG-TCTTAGACATGGTCTTACACTAGCTCTCATA
1 GATGCCATGTTC-TAGACATGGTCTTACA-TTGCTCTCATA
90084612 ACCCTAGTAT
Statistics
Matches: 190, Mismatches: 38, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
95 3 0.02
96 76 0.40
97 73 0.38
98 38 0.20
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.29
Consensus pattern (94 bp):
GATGCCATGTTCTAGACATGGTCTTACATTGCTCTCATATAAATGCCGATGCCATGTTCCAAACA
TGGTCTTACACTGGCTCACATATCGAGCC
Found at i:90093081 original size:11 final size:11
Alignment explanation
Indices: 90093065--90093094 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
90093055 ATGTGTATCA
90093065 GGTTTGAAGAT
1 GGTTTGAAGAT
90093076 GGTTTGAAGAT
1 GGTTTGAAGAT
*
90093087 GGATTGAA
1 GGTTTGAA
90093095 CAATGAGATC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.30, C:0.00, G:0.37, T:0.33
Consensus pattern (11 bp):
GGTTTGAAGAT
Found at i:90098360 original size:28 final size:28
Alignment explanation
Indices: 90098328--90098453 Score: 162
Period size: 29 Copynumber: 4.4 Consensus size: 28
90098318 AGTAAGTCCT
*
90098328 CACACTTAGTGTTATATAATCAAACTCG
1 CACACTTAGTGCTATATAATCAAACTCG
*
90098356 CACACTTAGTGCTTACATAATCAAACTCG
1 CACACTTAGTGC-TATATAATCAAACTCG
* *
90098385 CACACTTAGTGCTATATAATCGAACTTG
1 CACACTTAGTGCTATATAATCAAACTCG
** * *
90098413 CACACTTAGTGCTATGCAATTTAAACCCG
1 CACACTTAGTGCTATATAA-TCAAACTCG
90098442 CACACTTAGTGC
1 CACACTTAGTGC
90098454 CAATCTCATG
Statistics
Matches: 85, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
28 41 0.48
29 44 0.52
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.29
Consensus pattern (28 bp):
CACACTTAGTGCTATATAATCAAACTCG
Found at i:90098401 original size:57 final size:57
Alignment explanation
Indices: 90098328--90098453 Score: 173
Period size: 57 Copynumber: 2.2 Consensus size: 57
90098318 AGTAAGTCCT
* *
90098328 CACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAACTCG
1 CACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACA-AATCAAACCCG
* * * * *
90098385 CACACTTAGTGCTATATAATCGAACTTGCACACTTAGTGCTATGCAATTTAAACCCG
1 CACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAACCCG
90098442 CACACTTAGTGC
1 CACACTTAGTGC
90098454 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
57 58 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.29
Consensus pattern (57 bp):
CACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAACCCG
Found at i:90103628 original size:40 final size:40
Alignment explanation
Indices: 90103573--90103723 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
90103563 GGATATAGCT
*
90103573 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACATAGCCCGGATT-GAGTA
* * * *
90103613 ACTCGTACAATTGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACATAGCCCGGATTGAGTA
* * * *
90103653 ACTCGCACAAATGCCTTCGGGAC-TTGCCCAGAACT-AGTC
1 ACTCGCACAAATGCCTTCGGGACATAGCCC-GGATTGAGTA
* * * *
90103692 ACTAGCGCAGATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACATAGCCCGG
90103724 TTATCATCCA
Statistics
Matches: 92, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
39 29 0.32
40 61 0.66
41 2 0.02
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACATAGCCCGGATTGAGTA
Found at i:90106041 original size:235 final size:235
Alignment explanation
Indices: 90105630--90106101 Score: 890
Period size: 235 Copynumber: 2.0 Consensus size: 235
90105620 TAATTTCTCA
*
90105630 TAGCTTCCTCAGGTTCCCACGTAGCCTCTTCGACCCCGTGTTGTTTCCATAAAACTTTCACTAAA
1 TAGCTTCCTCAGGTTCCCACGTAGCCTCTTCGACCCCGTGTTGTTTCCACAAAACTTTCACTAAA
90105695 GCTATGCTTTTATTTCTCAACTGATTAACCTCTCGAGCTAACACTTTGATTGGTTCTTCACCATA
66 GCTATGCTTTTATTTCTCAACTGATTAACCTCTCGAGCTAACACTTTGATTGGTTCTTCACCATA
*
90105760 TGTCATACCAAGTCGAATCTCAATCTCTGATAGTGAGATTACATGCGAAGGATCTGATCGATATC
131 TGTCATACCAAGTCGAATCTAAATCTCTGATAGTGAGATTACATGCGAAGGATCTGATCGATATC
90105825 ATCGTAACACCAACACATGAAATACATTGTGGATCCTTTC
196 ATCGTAACACCAACACATGAAATACATTGTGGATCCTTTC
90105865 TAGCTTCCTCAGGTTCCCACGTAGCCTCTTCGACCCCGTGTTGTTTCCACAAAACTTTCACTAAA
1 TAGCTTCCTCAGGTTCCCACGTAGCCTCTTCGACCCCGTGTTGTTTCCACAAAACTTTCACTAAA
*
90105930 GCTATGCTTTTATTTCTCAACTGTTTAACCTCTCGAGCTAACACTTTGATTGGTTCTTCACCATA
66 GCTATGCTTTTATTTCTCAACTGATTAACCTCTCGAGCTAACACTTTGATTGGTTCTTCACCATA
*
90105995 TGTCATACCAGGTCGAATCTAAATCTCTGATAGTGAGATTACATGCGAAGGATCTGATCGATATC
131 TGTCATACCAAGTCGAATCTAAATCTCTGATAGTGAGATTACATGCGAAGGATCTGATCGATATC
* *
90106060 GTCGTAACACCGACACATGAAATACATTGTGGATCCTTTC
196 ATCGTAACACCAACACATGAAATACATTGTGGATCCTTTC
90106100 TA
1 TA
90106102 ACTCCGACGG
Statistics
Matches: 231, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
235 231 1.00
ACGTcount: A:0.26, C:0.25, G:0.15, T:0.33
Consensus pattern (235 bp):
TAGCTTCCTCAGGTTCCCACGTAGCCTCTTCGACCCCGTGTTGTTTCCACAAAACTTTCACTAAA
GCTATGCTTTTATTTCTCAACTGATTAACCTCTCGAGCTAACACTTTGATTGGTTCTTCACCATA
TGTCATACCAAGTCGAATCTAAATCTCTGATAGTGAGATTACATGCGAAGGATCTGATCGATATC
ATCGTAACACCAACACATGAAATACATTGTGGATCCTTTC
Found at i:90107421 original size:23 final size:23
Alignment explanation
Indices: 90107395--90107447 Score: 65
Period size: 22 Copynumber: 2.3 Consensus size: 23
90107385 ATTCTCTTTT
*
90107395 CTACTCAAATCCATAT-CCAAAAC
1 CTAC-CAAATCAATATGCCAAAAC
90107418 CTACCAAATCAATATGCCAAAA-
1 CTACCAAATCAATATGCCAAAAC
*
90107440 TTACCAAA
1 CTACCAAA
90107448 CTTACATAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
22 17 0.63
23 10 0.37
ACGTcount: A:0.47, C:0.30, G:0.02, T:0.21
Consensus pattern (23 bp):
CTACCAAATCAATATGCCAAAAC
Found at i:90108356 original size:43 final size:43
Alignment explanation
Indices: 90108218--90108384 Score: 135
Period size: 43 Copynumber: 3.9 Consensus size: 43
90108208 AAGCTCGTAC
* * * *
90108218 AATG-CAATATCCCAGATATGGTCTTACATGTTATCAC-ATATT
1 AATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAATA-A
* * * * * * *
90108260 GATGCCACTGTCCCAGGCAGGGTCTTATACT-AAATC-GAATAA
1 AATGCCAATGTCCCAGACATGGTCTTACA-TGTAATCACAATAA
* *
90108302 CGATGCCAATGTCCCAGATATGGTCTTACATGTAATCACAATAA
1 -AATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAATAA
* * *
90108346 AATGCTAATGTCCCAAACATTGTCTTACATGTAATCACA
1 AATGCCAATGTCCCAGACATGGTCTTACATGTAATCACA
90108385 TCTCGATAAA
Statistics
Matches: 96, Mismatches: 23, Indels: 11
0.74 0.18 0.08
Matches are distributed among these distances:
42 4 0.04
43 86 0.90
44 6 0.06
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.29
Consensus pattern (43 bp):
AATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAATAA
Found at i:90119896 original size:40 final size:40
Alignment explanation
Indices: 90119841--90120062 Score: 295
Period size: 40 Copynumber: 5.6 Consensus size: 40
90119831 TATTCGAATG
* *
90119841 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* * * *
90119881 ATATCCAGGCTAAGTCCTGAAGGCATTTTTGCTATTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
90119921 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* * *
90119961 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* * * *
90120001 ATATCCGGGCTAAGACTCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGATT
*
90120041 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
90120063 TACTTGGGTT
Statistics
Matches: 161, Mismatches: 20, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
39 13 0.08
40 146 0.91
41 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
Found at i:90121755 original size:39 final size:39
Alignment explanation
Indices: 90121709--90121901 Score: 224
Period size: 39 Copynumber: 4.9 Consensus size: 39
90121699 CCCTTGATTC
*
90121709 CACTTACGTGCCCCTGTTGTGCTTCGGTACCCCTGATCG
1 CACTTACGTGCCCCTGTTGTACTTCGGTACCCCTGATCG
* ** * *
90121748 CATTTACGTGCCCAAGTTGTACTTCGATACCCCTGATTG
1 CACTTACGTGCCCCTGTTGTACTTCGGTACCCCTGATCG
* * * *
90121787 CACTTAGGTGCCCTTATTGTACTTTGGTACCCCTGATCG
1 CACTTACGTGCCCCTGTTGTACTTCGGTACCCCTGATCG
* * *
90121826 CACTTATGTGCCCCTGTTATACTTCGGTACCCCTGATTG
1 CACTTACGTGCCCCTGTTGTACTTCGGTACCCCTGATCG
* * * * *
90121865 CACTTACATGCCCCTGTTATACTCCTGTACTCCTGAT
1 CACTTACGTGCCCCTGTTGTACTTCGGTACCCCTGAT
90121902 AGCTCTATTG
Statistics
Matches: 129, Mismatches: 25, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 129 1.00
ACGTcount: A:0.16, C:0.32, G:0.18, T:0.34
Consensus pattern (39 bp):
CACTTACGTGCCCCTGTTGTACTTCGGTACCCCTGATCG
Found at i:90121830 original size:20 final size:20
Alignment explanation
Indices: 90121775--90121869 Score: 79
Period size: 19 Copynumber: 4.8 Consensus size: 20
90121765 TGTACTTCGA
*
90121775 TACCCCTGATTGCACTTAGG
1 TACCCCTGATTGCACTTTGG
* * *
90121795 T-GCCCTTATTGTACTTTGG
1 TACCCCTGATTGCACTTTGG
*
90121814 TACCCCTGATCGCACTTAT-G
1 TACCCCTGATTGCACTT-TGG
* ** *
90121834 TGCCCCTG-TTATACTTCGG
1 TACCCCTGATTGCACTTTGG
90121853 TACCCCTGATTGCACTT
1 TACCCCTGATTGCACTT
90121870 ACATGCCCCT
Statistics
Matches: 55, Mismatches: 16, Indels: 8
0.70 0.20 0.10
Matches are distributed among these distances:
19 28 0.51
20 26 0.47
21 1 0.02
ACGTcount: A:0.16, C:0.31, G:0.18, T:0.36
Consensus pattern (20 bp):
TACCCCTGATTGCACTTTGG
Found at i:90123959 original size:26 final size:26
Alignment explanation
Indices: 90123930--90123979 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
90123920 GGAGAGCTAA
*
90123930 TAATTAGGAAGCTCACAAAGAGCCTT
1 TAATCAGGAAGCTCACAAAGAGCCTT
*
90123956 TAATCAGGAAGCTCACGAAGAGCC
1 TAATCAGGAAGCTCACAAAGAGCC
90123980 ATATATCGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (26 bp):
TAATCAGGAAGCTCACAAAGAGCCTT
Found at i:90129783 original size:40 final size:39
Alignment explanation
Indices: 90129729--90129823 Score: 111
Period size: 40 Copynumber: 2.4 Consensus size: 39
90129719 CTATCTCGGT
90129729 ATCGCACACTTAGTG-ATTCGTATAGCCAAAGCTATTTCAA
1 ATCGCACACTTAGTGCATT--TATAGCCAAAGCTATTTCAA
* * **
90129769 ATCGCACAGTTAGTGCTATTTATAGCCGAAGCTATTTTGA
1 ATCGCACACTTAGTGC-ATTTATAGCCAAAGCTATTTCAA
*
90129809 ATCGTACACTTAGTG
1 ATCGCACACTTAGTG
90129824 TCGAACATAG
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
40 44 0.94
42 3 0.06
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (39 bp):
ATCGCACACTTAGTGCATTTATAGCCAAAGCTATTTCAA
Found at i:90132355 original size:39 final size:39
Alignment explanation
Indices: 90132305--90132381 Score: 127
Period size: 39 Copynumber: 2.0 Consensus size: 39
90132295 TTAGACCATT
* * *
90132305 ATATTTTGTTTGGACAAAAATGGGCATGAATAGGACAAA
1 ATATTTCGTTTGGAAAAAAATAGGCATGAATAGGACAAA
90132344 ATATTTCGTTTGGAAAAAAATAGGCATGAATAGGACAA
1 ATATTTCGTTTGGAAAAAAATAGGCATGAATAGGACAA
90132382 GATTTTAAAG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.43, C:0.08, G:0.22, T:0.27
Consensus pattern (39 bp):
ATATTTCGTTTGGAAAAAAATAGGCATGAATAGGACAAA
Found at i:90133318 original size:64 final size:64
Alignment explanation
Indices: 90133238--90133426 Score: 186
Period size: 67 Copynumber: 2.9 Consensus size: 64
90133228 AGACATTATG
* * * *
90133238 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACAGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTAAAAGATAA
* * * * * *
90133302 ATGTAGCTAAGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTAAAAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTAAAAGAT
90133367 AA
63 AA
* * * *
90133369 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGCCAAAA
1 A-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGCTAAAA
90133427 TTATGTGTAC
Statistics
Matches: 100, Mismatches: 20, Indels: 11
0.76 0.15 0.08
Matches are distributed among these distances:
62 1 0.01
63 23 0.23
64 24 0.24
66 20 0.20
67 30 0.30
68 2 0.02
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.22
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTAAAAGATAA
Found at i:90167964 original size:44 final size:43
Alignment explanation
Indices: 90167911--90168023 Score: 133
Period size: 43 Copynumber: 2.6 Consensus size: 43
90167901 AAATTTGAGA
90167911 CACTAAGTGTGCGATA-AATGAAATAG-CTACGACTAATTAATTGG
1 CACTAAGTGTGCGATACAAT--AATAGCCT-CGACTAATTAATTGG
* *
90167955 CACTAAGTGTG-GAATACAATTATAGCCTCGGCTAATTAATTGG
1 CACTAAGTGTGCG-ATACAATAATAGCCTCGACTAATTAATTGG
* *
90167998 CACTAAGTGAGCGATACAATTATAGC
1 CACTAAGTGTGCGATACAATAATAGC
90168024 TTTAGCTAAT
Statistics
Matches: 62, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
43 42 0.68
44 17 0.27
45 3 0.05
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.27
Consensus pattern (43 bp):
CACTAAGTGTGCGATACAATAATAGCCTCGACTAATTAATTGG
Found at i:90167991 original size:43 final size:44
Alignment explanation
Indices: 90167943--90168056 Score: 142
Period size: 43 Copynumber: 2.6 Consensus size: 44
90167933 ATAGCTACGA
*
90167943 CTAATTAATTGGCACTAAGTGTG-GAATACAATTATAGCCTCGG
1 CTAATTAATTGGCACTAAGTGTGCGAATACAATTATAGCCTCAG
* * *
90167986 CTAATTAATTGGCACTAAGTGAGCG-ATACAATTATAGCTTTAG
1 CTAATTAATTGGCACTAAGTGTGCGAATACAATTATAGCCTCAG
*** *
90168029 CTAATTAATCAACACTAAGTGTGTGAAT
1 CTAATTAATTGGCACTAAGTGTGCGAAT
90168057 TCATTGAATG
Statistics
Matches: 60, Mismatches: 9, Indels: 3
0.83 0.12 0.04
Matches are distributed among these distances:
43 57 0.95
44 3 0.05
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (44 bp):
CTAATTAATTGGCACTAAGTGTGCGAATACAATTATAGCCTCAG
Found at i:90174327 original size:44 final size:42
Alignment explanation
Indices: 90174277--90174396 Score: 127
Period size: 43 Copynumber: 2.8 Consensus size: 42
90174267 AATTTGAGGT
90174277 ACTAAGTGTGCAATA-AATGAAATAG-CTACGGCTAATTAATTGG
1 ACTAAGTGTGCAATACAAT--AATAGCCT-CGGCTAATTAATTGG
** *
90174320 CACTAAGTGTGTGATACAATTATAGCCTCGGCTAATTAATTGG
1 -ACTAAGTGTGCAATACAATAATAGCCTCGGCTAATTAATTGG
** *
90174363 ACCTAAGTGTGTGATACAATTATAGCCTCGGCTA
1 A-CTAAGTGTGCAATACAATAATAGCCTCGGCTA
90174397 TGTGTGCGAT
Statistics
Matches: 70, Mismatches: 3, Indels: 7
0.88 0.04 0.09
Matches are distributed among these distances:
42 1 0.01
43 51 0.73
44 15 0.21
45 3 0.04
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (42 bp):
ACTAAGTGTGCAATACAATAATAGCCTCGGCTAATTAATTGG
Found at i:90174352 original size:43 final size:43
Alignment explanation
Indices: 90174305--90174396 Score: 168
Period size: 43 Copynumber: 2.1 Consensus size: 43
90174295 GAAATAGCTA
90174305 CGGCTAATTAATTGG-CACTAAGTGTGTGATACAATTATAGCCT
1 CGGCTAATTAATTGGAC-CTAAGTGTGTGATACAATTATAGCCT
90174348 CGGCTAATTAATTGGACCTAAGTGTGTGATACAATTATAGCCT
1 CGGCTAATTAATTGGACCTAAGTGTGTGATACAATTATAGCCT
90174391 CGGCTA
1 CGGCTA
90174397 TGTGTGCGAT
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
43 47 0.98
44 1 0.02
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (43 bp):
CGGCTAATTAATTGGACCTAAGTGTGTGATACAATTATAGCCT
Found at i:90174425 original size:72 final size:72
Alignment explanation
Indices: 90174326--90174460 Score: 227
Period size: 72 Copynumber: 1.9 Consensus size: 72
90174316 TTGGCACTAA
*
90174326 GTGTGTGATACAATTATAGCCTCGGCTAATTAATTGG-ACCTAAGTGTGTGATACAATTATAGCC
1 GTGTGCGATACAATTATAGCCTCGGCTAATTAATTGGCA-CTAAGTGTGTGATACAATTATAGCC
90174390 TCGGCTAT
65 TCGGCTAT
* *
90174398 GTGTGCGATACAATTATAGCTTTGGCTAATTAATTGGCACTAAGTGTGTGATACAATTATAGC
1 GTGTGCGATACAATTATAGCCTCGGCTAATTAATTGGCACTAAGTGTGTGATACAATTATAGC
90174461 TTCAGCTAAT
Statistics
Matches: 59, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
72 58 0.98
73 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (72 bp):
GTGTGCGATACAATTATAGCCTCGGCTAATTAATTGGCACTAAGTGTGTGATACAATTATAGCCT
CGGCTAT
Found at i:90174452 original size:43 final size:43
Alignment explanation
Indices: 90174398--90174491 Score: 152
Period size: 43 Copynumber: 2.2 Consensus size: 43
90174388 CCTCGGCTAT
** *
90174398 GTGTGCGATACAATTATAGCTTTGGCTAATTAATTGGCACTAA
1 GTGTGCGATACAATTATAGCTTCAGCTAATTAATCGGCACTAA
*
90174441 GTGTGTGATACAATTATAGCTTCAGCTAATTAATCGGCACTAA
1 GTGTGCGATACAATTATAGCTTCAGCTAATTAATCGGCACTAA
90174484 GTGTGCGA
1 GTGTGCGA
90174492 GTTCGTTGAA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (43 bp):
GTGTGCGATACAATTATAGCTTCAGCTAATTAATCGGCACTAA
Found at i:90176319 original size:28 final size:28
Alignment explanation
Indices: 90176279--90176357 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
90176269 GCAATCAAAT
* * *
90176279 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
90176307 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
90176335 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
90176358 CGAATGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:90178711 original size:24 final size:24
Alignment explanation
Indices: 90178676--90178743 Score: 118
Period size: 24 Copynumber: 2.8 Consensus size: 24
90178666 AGTCTATCAA
*
90178676 GAGAGGATTTAGGAGTTGATAAGG
1 GAGAGGATTTAGGAGCTGATAAGG
*
90178700 GATAGGATTTAGGAGCTGATAAGG
1 GAGAGGATTTAGGAGCTGATAAGG
90178724 GAGAGGATTTAGGAGCTGAT
1 GAGAGGATTTAGGAGCTGAT
90178744 TAGGCAGAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.32, C:0.03, G:0.40, T:0.25
Consensus pattern (24 bp):
GAGAGGATTTAGGAGCTGATAAGG
Found at i:90180386 original size:6 final size:6
Alignment explanation
Indices: 90180375--90180452 Score: 59
Period size: 6 Copynumber: 12.7 Consensus size: 6
90180365 AAGAAAATTG
* * * * *
90180375 AAAAAT AAAAAT CAACAG AAAAAT AAGAAT AAAATAA ATAAAAT AAAAA-
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAA-AT A-AAAAT AAAAAT
* *
90180424 AATAAG AATAAAT AAAAAT AAAAAT AAAA
1 AAAAAT AA-AAAT AAAAAT AAAAAT AAAA
90180453 TAGGAGGATT
Statistics
Matches: 55, Mismatches: 13, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
5 4 0.07
6 40 0.73
7 8 0.15
8 3 0.05
ACGTcount: A:0.78, C:0.03, G:0.04, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:90180432 original size:28 final size:30
Alignment explanation
Indices: 90180360--90180452 Score: 102
Period size: 28 Copynumber: 3.0 Consensus size: 30
90180350 TATGTCTTTC
*
90180360 AAAATAAGAA-AATTGAAAAATAAAAATCAACAGA
1 AAAATAAGAATAAAT-AAAAATAAAAAT--A-A-A
*
90180394 AAAATAAGAATAAA-ATAAAT-AAAATAAA
1 AAAATAAGAATAAATAAAAATAAAAATAAA
90180422 AAAATAAGAATAAATAAAAATAAAAATAAA
1 AAAATAAGAATAAATAAAAATAAAAATAAA
90180452 A
1 A
90180453 TAGGAGGATT
Statistics
Matches: 53, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
28 15 0.28
29 6 0.11
30 10 0.19
32 5 0.09
33 5 0.09
34 10 0.19
35 2 0.04
ACGTcount: A:0.76, C:0.02, G:0.05, T:0.16
Consensus pattern (30 bp):
AAAATAAGAATAAATAAAAATAAAAATAAA
Found at i:90186293 original size:28 final size:27
Alignment explanation
Indices: 90186229--90186408 Score: 279
Period size: 28 Copynumber: 6.6 Consensus size: 27
90186219 ATATTAAGTC
* *
90186229 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
90186256 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*
90186284 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
90186311 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*
90186339 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
90186367 CGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
90186394 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
90186409 GCACAATTTA
Statistics
Matches: 143, Mismatches: 7, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
27 66 0.46
28 76 0.53
29 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:90186313 original size:55 final size:55
Alignment explanation
Indices: 90186229--90186408 Score: 299
Period size: 55 Copynumber: 3.3 Consensus size: 55
90186219 ATATTAAGTC
* * *
90186229 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCATACT
90186284 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCATACT
* *
90186339 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATATTCA-ATT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAATCATACT
90186394 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
90186409 GCACAATTTA
Statistics
Matches: 119, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
55 92 0.77
56 27 0.23
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.28
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCATACT
Found at i:90186368 original size:83 final size:82
Alignment explanation
Indices: 90186229--90186408 Score: 297
Period size: 83 Copynumber: 2.2 Consensus size: 82
90186219 ATATTAAGTC
* * *
90186229 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACTCGCACACTTA
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
90186294 GTGCTACATAGTCAACT
66 GTGCTACATAGTCAACT
*
90186311 CGCACACTTAGTGCTACATAATCATACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 CGCACACTTAGTGCTACATAATCA-ACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTT
* *
90186376 AGTGCTACATATTCAATT
65 AGTGCTACATAGTCAACT
90186394 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
90186409 GCACAATTTA
Statistics
Matches: 91, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
82 22 0.24
83 69 0.76
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.28
Consensus pattern (82 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
GTGCTACATAGTCAACT
Found at i:90188197 original size:31 final size:31
Alignment explanation
Indices: 90188159--90188217 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
90188149 AGGTCTAACA
90188159 ATACTTGATTCAGTTCCTGTTAAAGAGGACT
1 ATACTTGATTCAGTTCCTGTTAAAGAGGACT
90188190 ATACTTGATTCAGTTCCTGTTAAAGAGG
1 ATACTTGATTCAGTTCCTGTTAAAGAGG
90188218 GTTTAGCATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.36
Consensus pattern (31 bp):
ATACTTGATTCAGTTCCTGTTAAAGAGGACT
Found at i:90188520 original size:21 final size:20
Alignment explanation
Indices: 90188473--90188522 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
90188463 CTGCCAAGAG
*
90188473 AAAGAAAAAGTAAATTAATA
1 AAAGTAAAAGTAAATTAATA
* *
90188493 AACAGTAAAATTAAATTAAATT
1 AA-AGTAAAAGTAAATT-AATA
90188515 AAAGTAAA
1 AAAGTAAA
90188523 TTGCAAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 2 0.08
21 18 0.72
22 5 0.20
ACGTcount: A:0.66, C:0.02, G:0.08, T:0.24
Consensus pattern (20 bp):
AAAGTAAAAGTAAATTAATA
Found at i:90194436 original size:46 final size:46
Alignment explanation
Indices: 90194286--90194535 Score: 199
Period size: 45 Copynumber: 5.3 Consensus size: 46
90194276 AATCAGATAT
* *
90194286 ACATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCTAGTGTAAG
1 ACATGTCTGGGACATGCATCGGCCTCGA-GATGAGAGCTAGTGTAAG
** * *
90194332 ACCATGTCTGGGACATGGCATCGGTATTGAGGTGAGAGCTAGTGTAAG
1 A-CATGTCTGGGACAT-GCATCGGCCTCGAGATGAGAGCTAGTGTAAG
*
90194380 ACATG-CTGGGACATGCATCGGCCTCGAGATGTA-AGCAAGTGTAAG
1 ACATGTCTGGGACATGCATCGGCCTCGAGATG-AGAGCTAGTGTAAG
* * * *
90194425 ACATGTTTGGGACATGCATC-GACTACGAGATGTG-TC-AGTGTAAG
1 ACATGTCTGGGACATGCATCGGCCT-CGAGATGAGAGCTAGTGTAAG
* * * * *
90194469 ACCATTTCTAGGACATGACATCAGCAC-AGATAAGTGAGAGCTAGTGTAAG
1 A-CATGTCTGGGACATG-CATCGGC-CTCGA-GA-TGAGAGCTAGTGTAAG
*
90194519 ACCATGTTTGGGACATG
1 A-CATGTCTGGGACATG
90194536 GCATTGGGCT
Statistics
Matches: 163, Mismatches: 26, Indels: 26
0.76 0.12 0.12
Matches are distributed among these distances:
44 9 0.06
45 45 0.28
46 37 0.23
47 20 0.12
48 28 0.17
49 2 0.01
50 22 0.13
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.24
Consensus pattern (46 bp):
ACATGTCTGGGACATGCATCGGCCTCGAGATGAGAGCTAGTGTAAG
Found at i:90195813 original size:21 final size:20
Alignment explanation
Indices: 90195789--90195828 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
90195779 GTTATAATGA
* *
90195789 CCACACGGGCGTGTTGCCCTT
1 CCACACAGGCATG-TGCCCTT
90195810 CCACACAGGCATGTGCCCT
1 CCACACAGGCATGTGCCCT
90195829 ATTTCAAGAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.15, C:0.40, G:0.25, T:0.20
Consensus pattern (20 bp):
CCACACAGGCATGTGCCCTT
Found at i:90198161 original size:18 final size:18
Alignment explanation
Indices: 90198134--90198177 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
90198124 TGGTGGTTTT
*
90198134 TAATTAAGGCTAATGTTG
1 TAATTTAGGCTAATGTTG
90198152 TAATTTAGGCTAATGTTG
1 TAATTTAGGCTAATGTTG
90198170 TAATTTAG
1 TAATTTAG
90198178 TAATAAAGGC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.32, C:0.05, G:0.20, T:0.43
Consensus pattern (18 bp):
TAATTTAGGCTAATGTTG
Found at i:90201618 original size:42 final size:43
Alignment explanation
Indices: 90201559--90201649 Score: 130
Period size: 42 Copynumber: 2.1 Consensus size: 43
90201549 TAGGGTTAGT
*
90201559 TGAGATTAAGTGTAAGACCATATCTGAGATA-TGGCATCGATA
1 TGAGATTAAGTGTAAGACCATAGCTGAGATATTGGCATCGATA
** * *
90201601 TGAGATTTTGTGTAAGACCATAGCTGGGCTATTGGCATCGATA
1 TGAGATTAAGTGTAAGACCATAGCTGAGATATTGGCATCGATA
90201644 TGAGAT
1 TGAGAT
90201650 CCCATGTAAG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 26 0.60
43 17 0.40
ACGTcount: A:0.31, C:0.12, G:0.26, T:0.31
Consensus pattern (43 bp):
TGAGATTAAGTGTAAGACCATAGCTGAGATATTGGCATCGATA
Found at i:90201658 original size:43 final size:42
Alignment explanation
Indices: 90201569--90201680 Score: 116
Period size: 43 Copynumber: 2.6 Consensus size: 42
90201559 TGAGATTAAG
* ****
90201569 TGTAAGACCATATCTGAGATATGGCATCGATATGAGATTTTG
1 TGTAAGACCATAGCTGAGATATGGCATCGATATGAGATCCCA
* *
90201611 TGTAAGACCATAGCTGGGCTATTGGCATCGATATGAGATCCCA
1 TGTAAGACCATAGCTGAGATA-TGGCATCGATATGAGATCCCA
* ** *
90201654 TGTAAGATCATATATGGGATATGGCAT
1 TGTAAGACCATAGCTGAGATATGGCAT
90201681 TCGTATGGTA
Statistics
Matches: 58, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 24 0.41
43 34 0.59
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATAGCTGAGATATGGCATCGATATGAGATCCCA
Found at i:90201974 original size:15 final size:16
Alignment explanation
Indices: 90201954--90201983 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
90201944 CACAAAAACA
90201954 TTTATGTT-AATTTAC
1 TTTATGTTAAATTTAC
90201969 TTTATGTTAAATTTA
1 TTTATGTTAAATTTA
90201984 TGTTAAAGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.30, C:0.03, G:0.07, T:0.60
Consensus pattern (16 bp):
TTTATGTTAAATTTAC
Found at i:90208282 original size:7 final size:7
Alignment explanation
Indices: 90208266--90208299 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
90208256 ATCCTTGCTT
90208266 TTTTCTC
1 TTTTCTC
*
90208273 TTTCCTC
1 TTTTCTC
90208280 TTTTCTC
1 TTTTCTC
90208287 TTTTCTC
1 TTTTCTC
90208294 TTTTCT
1 TTTTCT
90208300 TATTTATAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (7 bp):
TTTTCTC
Found at i:90214646 original size:40 final size:40
Alignment explanation
Indices: 90214602--90214865 Score: 360
Period size: 40 Copynumber: 6.7 Consensus size: 40
90214592 GCTCCTCGTT
* *
90214602 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
90214642 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
90214682 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
90214722 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
90214762 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
90214801 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGTAAC-TCGCA
90214842 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
90214866 CATCATTCAA
Statistics
Matches: 206, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
38 2 0.01
39 49 0.24
40 146 0.71
41 9 0.04
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:90231053 original size:54 final size:54
Alignment explanation
Indices: 90230978--90231195 Score: 279
Period size: 54 Copynumber: 4.1 Consensus size: 54
90230968 TGGATAAGTT
* *
90230978 GTAGAATTATCGAAATACCCCTGTAAGGTAGAATTATCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGTAGG
** * *
90231032 GTAGAATTATTGAAATACCCCTGTAAGTTAGAATTATCGAAATACCC-T-T---
1 GTAGAATTACCGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGTAGG
*
90231081 GTAGAATTACCGAAATACCACTGT-AGGATAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAAGG-TAGAATTACCGAAATACCCTTGTAGG
* * * *
90231135 GTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGTAGG
90231189 GTA-AATT
1 GTAGAATT
90231196 TACCATTTTG
Statistics
Matches: 144, Mismatches: 13, Indels: 15
0.84 0.08 0.09
Matches are distributed among these distances:
48 2 0.01
49 39 0.27
50 1 0.01
51 1 0.01
52 1 0.01
53 4 0.03
54 94 0.65
55 2 0.01
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.27
Consensus pattern (54 bp):
GTAGAATTACCGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGTAGG
Found at i:90231155 original size:103 final size:103
Alignment explanation
Indices: 90230976--90231185 Score: 314
Period size: 103 Copynumber: 2.0 Consensus size: 103
90230966 AGTGGATAAG
* * * *
90230976 TTGTAGAATTATCGAAATACCCCTGTAAGGTAGAATTATCGAAATACCCTTGTAGGGTAGAATTA
1 TTGTAGAATTACCGAAATACCACTGTAAGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATA
** * *
90231041 TTGAAATACCCCTGTAAGTTAGAATTATCGAAATACCC
66 CCGAAATACCCCTGTAAGGTAGAATTACCGAAATACCC
90231079 TTGTAGAATTACCGAAATACCACTGT-AGGATAGAATTACCGAAATACCCTTGTAGGGTAGAAAT
1 TTGTAGAATTACCGAAATACCACTGTAAGG-TAGAATTACCGAAATACCCTTGTAGGGTAGAAAT
* *
90231143 ACCGAAATACCCCTGTAGGGTAGAATTACCGAGATACCC
65 ACCGAAATACCCCTGTAAGGTAGAATTACCGAAATACCC
90231182 TTGT
1 TTGT
90231186 GGGGTAAATT
Statistics
Matches: 96, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
102 3 0.03
103 93 0.97
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (103 bp):
TTGTAGAATTACCGAAATACCACTGTAAGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATA
CCGAAATACCCCTGTAAGGTAGAATTACCGAAATACCC
Found at i:90231190 original size:27 final size:27
Alignment explanation
Indices: 90230978--90231195 Score: 250
Period size: 27 Copynumber: 8.3 Consensus size: 27
90230968 TGGATAAGTT
* *
90230978 GTAGAATTATCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
90231005 GTAGAATTATCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
** *
90231032 GTAGAATTATTGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
90231059 TTAGAATTATCGAAATA-CCCT-T---
1 GTAGAATTACCGAAATACCCCTGTAGG
*
90231081 GTAGAATTACCGAAATACCACTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
90231108 ATAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
90231135 GTAGAAATACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
90231162 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
90231189 GTA-AATT
1 GTAGAATT
90231196 TACCATTTTG
Statistics
Matches: 166, Mismatches: 20, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
22 15 0.09
23 3 0.02
24 1 0.01
25 1 0.01
26 8 0.05
27 138 0.83
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.27
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:90231895 original size:27 final size:26
Alignment explanation
Indices: 90231851--90231902 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
90231841 CTCGCTGCAA
*
90231851 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
90231878 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
90231903 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:90248299 original size:27 final size:27
Alignment explanation
Indices: 90248269--90248708 Score: 664
Period size: 27 Copynumber: 16.3 Consensus size: 27
90248259 GTTACAATTC
90248269 CGGTAATTCTACCCTACAGGGGTATTT
1 CGGTAATTCTACCCTACAGGGGTATTT
* *
90248296 CGGTAATTTTACCCTACAGGGGTATTG
1 CGGTAATTCTACCCTACAGGGGTATTT
*
90248323 CGGTAATTCTACCCTACATGGGTATTT
1 CGGTAATTCTACCCTACAGGGGTATTT
*
90248350 CAGTAATTCTACCCTACAGGGGTATTT
1 CGGTAATTCTACCCTACAGGGGTATTT
* *
90248377 CGGTAATTCTACCCTACAAGGGTATTG
1 CGGTAATTCTACCCTACAGGGGTATTT
*
90248404 CGATAATTCTACCCTACAGGGGTATTT
1 CGGTAATTCTACCCTACAGGGGTATTT
90248431 CGGTAATTCTACCCTACAGGGGTATTT
1 CGGTAATTCTACCCTACAGGGGTATTT
90248458 CGGTAATTCTACCCTACAGGGGTATTT
1 CGGTAATTCTACCCTACAGGGGTATTT
*
90248485 CGGTAATTCTACCCTACAGGGGTATTG
1 CGGTAATTCTACCCTACAGGGGTATTT
* * *
90248512 CGGTACTTCTACCCTGCAGGGGTATTG
1 CGGTAATTCTACCCTACAGGGGTATTT
* *
90248539 CAGTAATTCTACCCTACAGGGGTATTG
1 CGGTAATTCTACCCTACAGGGGTATTT
90248566 CGGTAATTCTACCCTACAGGGGTATTT
1 CGGTAATTCTACCCTACAGGGGTATTT
* * *
90248593 TGGGAATTCTACCCTACAGGGGTATTC
1 CGGTAATTCTACCCTACAGGGGTATTT
* *
90248620 CGATAATTCTACCCTACAGGGGTATTC
1 CGGTAATTCTACCCTACAGGGGTATTT
* * *
90248647 CAGTAATTCTACCCTACAAGGGTATTC
1 CGGTAATTCTACCCTACAGGGGTATTT
* *
90248674 CGGTAATTCTACCCTACAGGGATATTG
1 CGGTAATTCTACCCTACAGGGGTATTT
*
90248701 CGATAATT
1 CGGTAATT
90248709 TTCTAAATCG
Statistics
Matches: 377, Mismatches: 36, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 377 1.00
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.32
Consensus pattern (27 bp):
CGGTAATTCTACCCTACAGGGGTATTT
Found at i:90248734 original size:27 final size:27
Alignment explanation
Indices: 90248704--90248776 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
90248694 GATATTGCGA
*
90248704 TAATTTTCTAAATCGAGGGTGAAACGG
1 TAATTTTCTAAATCGAGGGTAAAACGG
* * * *
90248731 TAATTCTATAAATTGAGGGTAAAATGG
1 TAATTTTCTAAATCGAGGGTAAAACGG
*
90248758 TAATTCTAC-AAATCGAGGG
1 TAATT-TTCTAAATCGAGGG
90248777 CATTTCAGTA
Statistics
Matches: 36, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.37, C:0.10, G:0.23, T:0.30
Consensus pattern (27 bp):
TAATTTTCTAAATCGAGGGTAAAACGG
Found at i:90250843 original size:12 final size:12
Alignment explanation
Indices: 90250826--90250864 Score: 62
Period size: 12 Copynumber: 3.2 Consensus size: 12
90250816 ATCTTCATTA
90250826 TTTCTTATTTAT
1 TTTCTTATTTAT
90250838 TTTCTTATTTAT
1 TTTCTTATTTAT
90250850 TTTCTT-TTTAAT
1 TTTCTTATTT-AT
90250862 TTT
1 TTT
90250865 TGATTTTGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 3 0.12
12 23 0.88
ACGTcount: A:0.15, C:0.08, G:0.00, T:0.77
Consensus pattern (12 bp):
TTTCTTATTTAT
Found at i:90251555 original size:19 final size:19
Alignment explanation
Indices: 90251531--90251567 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
90251521 AGACCTCAAT
90251531 TATGATACTTTAGTAGAAA
1 TATGATACTTTAGTAGAAA
90251550 TATGATACTTTAGTAGAA
1 TATGATACTTTAGTAGAA
90251568 TAACTTTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.41, C:0.05, G:0.16, T:0.38
Consensus pattern (19 bp):
TATGATACTTTAGTAGAAA
Found at i:90256813 original size:49 final size:49
Alignment explanation
Indices: 90256756--90256854 Score: 198
Period size: 49 Copynumber: 2.0 Consensus size: 49
90256746 TATACATCAC
90256756 AAGTATCAGTCACAGATTATAAGATTGTCCTGAAATCACCCTCATAGAT
1 AAGTATCAGTCACAGATTATAAGATTGTCCTGAAATCACCCTCATAGAT
90256805 AAGTATCAGTCACAGATTATAAGATTGTCCTGAAATCACCCTCATAGAT
1 AAGTATCAGTCACAGATTATAAGATTGTCCTGAAATCACCCTCATAGAT
90256854 A
1 A
90256855 GAACTTACTC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.28
Consensus pattern (49 bp):
AAGTATCAGTCACAGATTATAAGATTGTCCTGAAATCACCCTCATAGAT
Found at i:90257204 original size:48 final size:47
Alignment explanation
Indices: 90257051--90257322 Score: 189
Period size: 48 Copynumber: 5.7 Consensus size: 47
90257041 GGTAAATTGT
* * * *
90257051 CGATGCCATGTCCTAGACATGGTCTTACATTGGCTCACATGTCAA--GGC
1 CGATGCCATGTCC-AGACATGGTCTTACACTAGCTCTCA--TAAAGTGGC
* * * * *
90257099 CGATGACATGCCCCAAACATGGTCTTACACTAGCTATCGTC-TCAA-T-AC
1 CGATGCCATG-TCCAGACATGGTCTTACACTAGC--TC-TCATAAAGTGGC
* * * * *
90257147 CGATTCCATGTCTCAGGCATGGTCTTACAGTGGCTCTCATAAAGTGGT
1 CGATGCCATGTC-CAGACATGGTCTTACACTAGCTCTCATAAAGTGGC
* * *
90257195 CGATGCCATGTCCAGACATGGTCTTACACTAGCACACATATCAA--CGC
1 CGATGCCATGTCCAGACATGGTCTTACACTAGCTCTCATA--AAGTGGC
*
90257242 CAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAAGTGGC
1 CGATGCCATGT-CCAGACATGGTCTTACACTAGCTCTCATAAAGTGGC
* * * *
90257290 CAATACAATGTCCTAGACATGGTCTTGCACTAG
1 CGATGCCATGTCC-AGACATGGTCTTACACTAG
90257323 TCTTACACTA
Statistics
Matches: 177, Mismatches: 32, Indels: 30
0.74 0.13 0.13
Matches are distributed among these distances:
45 2 0.01
46 7 0.04
47 38 0.21
48 123 0.69
49 4 0.02
50 2 0.01
51 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (47 bp):
CGATGCCATGTCCAGACATGGTCTTACACTAGCTCTCATAAAGTGGC
Found at i:90257263 original size:95 final size:95
Alignment explanation
Indices: 90257053--90257322 Score: 267
Period size: 95 Copynumber: 2.8 Consensus size: 95
90257043 TAAATTGTCG
* * * * * * *
90257053 ATGCCATGTCCTAGACATGGTCTTACATTGGCTCACATGTCAA--GGCCGATGACATGCCCCAAA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA--TAAAGTGGCCGATGCCATG-TCCAGA
* * * * *
90257116 CATGGTCTTACACTAGCTATCGTCTCAATACCG
63 CATGGTCTTACACTAGCTAACATATCAACACCA
* * * * *
90257149 ATTCCATGTCTCAGGCATGGTCTTACAGTGGCTCTCATAAAGTGGTCGATGCCATGTCCAGACAT
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAAGTGGCCGATGCCATGTCCAGACAT
*
90257214 GGTCTTACACTAGC-ACACATATCAACGCCA
66 GGTCTTACACTAGCTA-ACATATCAACACCA
* * * *
90257244 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAAGTGGCCAATACAATGTCCTAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAAGTGGCCGATGCCATGTCC-AGACA
*
90257309 TGGTCTTGCACTAG
65 TGGTCTTACACTAG
90257323 TCTTACACTA
Statistics
Matches: 143, Mismatches: 27, Indels: 8
0.80 0.15 0.04
Matches are distributed among these distances:
94 4 0.03
95 79 0.55
96 60 0.42
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (95 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAAGTGGCCGATGCCATGTCCAGACAT
GGTCTTACACTAGCTAACATATCAACACCA
Found at i:90257331 original size:11 final size:11
Alignment explanation
Indices: 90257311--90257342 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
90257301 CCTAGACATG
*
90257311 GTCTTGCACTA
1 GTCTTACACTA
90257322 GTCTTACACTA
1 GTCTTACACTA
90257333 GTCTTACACT
1 GTCTTACACT
90257343 GGCTCTCATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.22, C:0.28, G:0.12, T:0.38
Consensus pattern (11 bp):
GTCTTACACTA
Found at i:90257414 original size:48 final size:48
Alignment explanation
Indices: 90257362--90257596 Score: 226
Period size: 48 Copynumber: 4.9 Consensus size: 48
90257352 AAAGTGGCAT
*
90257362 ATGCCATGTCCCAGACACGGTCTTACACTAGCACACATATCAACGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCG
* * * * *
90257410 ATGCCATGTCCCAGACATGGTTTTACACTAGCTCTCATA--AAGTGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAA--CGCCG
* * * *
90257458 ATGCTATGTCCCAAACATGGTCTTACACTAGCACACATATCAACACCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCG
** * *
90257506 ATGCCATGTCTTAGACATGATCTTACACTAGCACACATATC-AC-CCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCG
* ***
90257552 ATTGTCATGGCATGGTAGACATGGTCTTACACTAGCACACATATC
1 A-TGCCAT-G--TCCCAGACATGGTCTTACACTAGCACACATATC
90257597 GCCCAATTGT
Statistics
Matches: 155, Mismatches: 24, Indels: 14
0.80 0.12 0.07
Matches are distributed among these distances:
46 6 0.04
47 7 0.05
48 110 0.71
50 32 0.21
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCG
Found at i:90257441 original size:166 final size:165
Alignment explanation
Indices: 90257168--90257488 Score: 509
Period size: 166 Copynumber: 1.9 Consensus size: 165
90257158 CTCAGGCATG
* *
90257168 GTCTTACAGTGGCTCTCATAAAGTGGTCGATGCCATGTCCAGACATGGTCTTACACTAGCACACA
1 GTCTTACACTGGCTCTCATAAAGTGGTCGATGCCATGTCCAGACACGGTCTTACACTAGCACACA
90257233 TATCAACGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAAGTGGCCAATACAA
66 TATCAACGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAAGTGGCCAATACAA
* * *
90257298 TGTCCTAGACATGGTCTTGCACTAGTCTTACACTA
131 TGTCCCAAACATGGTCTTACACTAGTCTTACACTA
*
90257333 GTCTTACACTGGCTCTCATAAAGTGG-CATATGCCATGTCCCAGACACGGTCTTACACTAGCACA
1 GTCTTACACTGGCTCTCATAAAGTGGTC-GATGCCATGT-CCAGACACGGTCTTACACTAGCACA
* * ** *
90257397 CATATCAACGCCGATGCCATGTCCCAGACATGGTTTTACACTAGCTCTCATAAAGTGGCTGATGC
64 CATATCAACGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAAGTGGCCAATAC
*
90257462 TATGTCCCAAACATGGTCTTACACTAG
129 AATGTCCCAAACATGGTCTTACACTAG
90257489 CACACATATC
Statistics
Matches: 142, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
164 1 0.01
165 34 0.24
166 107 0.75
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.26
Consensus pattern (165 bp):
GTCTTACACTGGCTCTCATAAAGTGGTCGATGCCATGTCCAGACACGGTCTTACACTAGCACACA
TATCAACGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAAGTGGCCAATACAA
TGTCCCAAACATGGTCTTACACTAGTCTTACACTA
Found at i:90257500 original size:96 final size:96
Alignment explanation
Indices: 90257334--90257537 Score: 302
Period size: 96 Copynumber: 2.1 Consensus size: 96
90257324 CTTACACTAG
* *
90257334 TCTTACACTGGCTCTCATAAAGTGGCATATGCCATGTCCCAGACACGGTCTTACACTAGCACACA
1 TCTTACACTAGCTCTCATAAAGTGGCATATGCCATGTCCCAAACACGGTCTTACACTAGCACACA
* * *
90257399 TATCAACGCCGATGCCATGTCCCAGACATGG
66 TATCAACACCAATGCCATGTCCCAGACATGA
* * *
90257430 TTTTACACTAGCTCTCATAAAGTGGC-TGATGCTATGTCCCAAACATGGTCTTACACTAGCACAC
1 TCTTACACTAGCTCTCATAAAGTGGCAT-ATGCCATGTCCCAAACACGGTCTTACACTAGCACAC
**
90257494 ATATCAACACCAATGCCATGTCTTAGACATGA
65 ATATCAACACCAATGCCATGTCCCAGACATGA
90257526 TCTTACACTAGC
1 TCTTACACTAGC
90257538 ACACATATCA
Statistics
Matches: 96, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
95 1 0.01
96 95 0.99
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (96 bp):
TCTTACACTAGCTCTCATAAAGTGGCATATGCCATGTCCCAAACACGGTCTTACACTAGCACACA
TATCAACACCAATGCCATGTCCCAGACATGA
Found at i:90257589 original size:50 final size:50
Alignment explanation
Indices: 90257472--90257616 Score: 208
Period size: 50 Copynumber: 2.9 Consensus size: 50
90257462 TATGTCCCAA
* *
90257472 ACATGGTCTTACACTAGCACACATATCAACACCAA-TGCCATGTC-T--TAG
1 ACATGGTCTTACACTAGCACACATATC-AC-CCAATTGTCATGGCATGGTAG
*
90257520 ACATGATCTTACACTAGCACACATATCACCCAATTGTCATGGCATGGTAG
1 ACATGGTCTTACACTAGCACACATATCACCCAATTGTCATGGCATGGTAG
*
90257570 ACATGGTCTTACACTAGCACACATATCGCCCAATTGTCATGGCATGG
1 ACATGGTCTTACACTAGCACACATATCACCCAATTGTCATGGCATGG
90257617 ATAGCCAATC
Statistics
Matches: 88, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
46 4 0.05
47 9 0.10
48 27 0.31
50 48 0.55
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.26
Consensus pattern (50 bp):
ACATGGTCTTACACTAGCACACATATCACCCAATTGTCATGGCATGGTAG
Found at i:90257935 original size:17 final size:17
Alignment explanation
Indices: 90257913--90257953 Score: 82
Period size: 17 Copynumber: 2.4 Consensus size: 17
90257903 TTATAACCCA
90257913 CATTTTGGCAAAATGAC
1 CATTTTGGCAAAATGAC
90257930 CATTTTGGCAAAATGAC
1 CATTTTGGCAAAATGAC
90257947 CATTTTG
1 CATTTTG
90257954 CCCCTAGACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (17 bp):
CATTTTGGCAAAATGAC
Found at i:90267650 original size:21 final size:21
Alignment explanation
Indices: 90267625--90267676 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
90267615 AGTGGAGATG
90267625 GGAAAAACAGGTTCCAAAACA
1 GGAAAAACAGGTTCCAAAACA
*
90267646 GGAAAAACAAGTTCCAAAACA
1 GGAAAAACAGGTTCCAAAACA
* *
90267667 AGAATAACAG
1 GGAAAAACAG
90267677 TGGCTGTAGG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.56, C:0.17, G:0.17, T:0.10
Consensus pattern (21 bp):
GGAAAAACAGGTTCCAAAACA
Found at i:90282285 original size:11 final size:11
Alignment explanation
Indices: 90282269--90282300 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
90282259 TCACTGGGAG
90282269 GAATGAATTTA
1 GAATGAATTTA
90282280 GAATGAATTTA
1 GAATGAATTTA
90282291 GAATGAATTT
1 GAATGAATTT
90282301 TTTATATTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.44, C:0.00, G:0.19, T:0.38
Consensus pattern (11 bp):
GAATGAATTTA
Found at i:90285241 original size:40 final size:40
Alignment explanation
Indices: 90285197--90285460 Score: 360
Period size: 40 Copynumber: 6.7 Consensus size: 40
90285187 GCTCCTCGTT
* *
90285197 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
90285237 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
90285277 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
90285317 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
90285357 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
90285396 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGTAAC-TCGCA
90285437 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
90285461 CATCATTCAA
Statistics
Matches: 206, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
38 2 0.01
39 49 0.24
40 146 0.71
41 9 0.04
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:90290327 original size:18 final size:19
Alignment explanation
Indices: 90290306--90290356 Score: 61
Period size: 18 Copynumber: 2.7 Consensus size: 19
90290296 AAAAACTGAT
90290306 TTTCCAACAAAAAT-ACTA
1 TTTCCAACAAAAATGACTA
*
90290324 TTTCC-ATAAAAATGACTA
1 TTTCCAACAAAAATGACTA
*
90290342 TTTTCAACTAAAAAT
1 TTTCCAAC-AAAAAT
90290357 TACTTTTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 7 0.26
18 13 0.48
19 1 0.04
20 6 0.22
ACGTcount: A:0.47, C:0.18, G:0.02, T:0.33
Consensus pattern (19 bp):
TTTCCAACAAAAATGACTA
Found at i:90290901 original size:15 final size:15
Alignment explanation
Indices: 90290881--90290915 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
90290871 TTATATATTA
**
90290881 AAACTATAGGCTGTG
1 AAACTATAAACTGTG
90290896 AAACTATAAACTGTG
1 AAACTATAAACTGTG
90290911 AAACT
1 AAACT
90290916 GTAGATAATG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.43, C:0.14, G:0.17, T:0.26
Consensus pattern (15 bp):
AAACTATAAACTGTG
Found at i:90297326 original size:33 final size:33
Alignment explanation
Indices: 90297289--90297360 Score: 135
Period size: 33 Copynumber: 2.2 Consensus size: 33
90297279 TTTTCTTTCT
90297289 TTTCTCTTTCCTCTTTTATAGGGTAGGTCCCCC
1 TTTCTCTTTCCTCTTTTATAGGGTAGGTCCCCC
90297322 TTTCTCTTTCCTCTTTTATAGGGTAGGTCCCCC
1 TTTCTCTTTCCTCTTTTATAGGGTAGGTCCCCC
*
90297355 TCTCTC
1 TTTCTC
90297361 AGCACACTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.08, C:0.32, G:0.14, T:0.46
Consensus pattern (33 bp):
TTTCTCTTTCCTCTTTTATAGGGTAGGTCCCCC
Found at i:90297371 original size:33 final size:33
Alignment explanation
Indices: 90297301--90297371 Score: 90
Period size: 33 Copynumber: 2.2 Consensus size: 33
90297291 TCTCTTTCCT
* ** *
90297301 CTTTTATAGGGTAGGTCCCCCTTTCTCTTTCCT
1 CTTTTATAGGGTAGGTCCCCCTCTCTCTAGCCA
90297334 CTTTTATAGGGTAGGTCCCCCTCTCTC-AGCACA
1 CTTTTATAGGGTAGGTCCCCCTCTCTCTAGC-CA
90297367 CTTTT
1 CTTTT
90297372 CTCCCTCTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
32 1 0.03
33 32 0.97
ACGTcount: A:0.13, C:0.31, G:0.15, T:0.41
Consensus pattern (33 bp):
CTTTTATAGGGTAGGTCCCCCTCTCTCTAGCCA
Found at i:90297651 original size:28 final size:28
Alignment explanation
Indices: 90297611--90297667 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
90297601 AGTGTAATGA
*
90297611 TAAAATTTGATTTAATTATTTATACTAT
1 TAAAATTTGATTTAATGATTTATACTAT
90297639 TAAAATTTGATTTAATGATTTATACTAT
1 TAAAATTTGATTTAATGATTTATACTAT
90297667 T
1 T
90297668 TGAACGAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.39, C:0.04, G:0.05, T:0.53
Consensus pattern (28 bp):
TAAAATTTGATTTAATGATTTATACTAT
Found at i:90299085 original size:20 final size:20
Alignment explanation
Indices: 90299057--90299107 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
90299047 TTGTACGGGA
* *
90299057 TTTGCACTTGGGTGCCTCTG
1 TTTGCACTTCGATGCCTCTG
*
90299077 TTTGTACTTCGATGCCTCTG
1 TTTGCACTTCGATGCCTCTG
* *
90299097 TATACACTTCG
1 TTTGCACTTCG
90299108 GTGCTCCTAT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.12, C:0.25, G:0.22, T:0.41
Consensus pattern (20 bp):
TTTGCACTTCGATGCCTCTG
Found at i:90303837 original size:12 final size:12
Alignment explanation
Indices: 90303820--90303856 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
90303810 AGAGAGTTAT
90303820 ACGGGTGAGGAC
1 ACGGGTGAGGAC
90303832 ACGGGTGAGGAC
1 ACGGGTGAGGAC
*
90303844 ACGGGTTAGGAC
1 ACGGGTGAGGAC
90303856 A
1 A
90303857 AAGCCGTGTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.27, C:0.16, G:0.46, T:0.11
Consensus pattern (12 bp):
ACGGGTGAGGAC
Found at i:90307375 original size:32 final size:32
Alignment explanation
Indices: 90307333--90307433 Score: 96
Period size: 32 Copynumber: 3.2 Consensus size: 32
90307323 ATGTGGCTCT
*
90307333 AAGCCTTCAGTAGCGGTATTATAATTGGCACA
1 AAGCCATCAGTAGCGGTATTATAATTGGCACA
* * **
90307365 AAGCCATCAGTAACTGTATTATGTTTGGCACA
1 AAGCCATCAGTAGCGGTATTATAATTGGCACA
* * * *
90307397 TAGCCATCAG-CGACGGTAATATAATCGGCACA
1 AAGCCATCAGTAG-CGGTATTATAATTGGCACA
*
90307429 CAGCC
1 AAGCC
90307434 TTGGGTAAAT
Statistics
Matches: 54, Mismatches: 14, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
32 54 1.00
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.25
Consensus pattern (32 bp):
AAGCCATCAGTAGCGGTATTATAATTGGCACA
Found at i:90307550 original size:22 final size:22
Alignment explanation
Indices: 90307502--90307566 Score: 67
Period size: 22 Copynumber: 3.0 Consensus size: 22
90307492 GTAAATACGT
*
90307502 TTGGCACAAAGCCATAGTCAGG
1 TTGGCACAGAGCCATAGTCAGG
* ** *
90307524 ATGGCACAGAGCCATTTTTAGG
1 TTGGCACAGAGCCATAGTCAGG
* *
90307546 TTGGCATAGAGCCATAATCAG
1 TTGGCACAGAGCCATAGTCAG
90307567 ATTACGCGGC
Statistics
Matches: 33, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (22 bp):
TTGGCACAGAGCCATAGTCAGG
Found at i:90307985 original size:27 final size:27
Alignment explanation
Indices: 90307945--90307996 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
90307935 ACAGTCATTT
*
90307945 TACCCTACAAGGGTATTTCGGTAATCC
1 TACCCTACAAGGGTATCTCGGTAATCC
*
90307972 TACCCTACAGGGGTATCTCGGTAAT
1 TACCCTACAAGGGTATCTCGGTAAT
90307997 TTTGTAAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (27 bp):
TACCCTACAAGGGTATCTCGGTAATCC
Found at i:90308041 original size:27 final size:26
Alignment explanation
Indices: 90307981--90308220 Score: 184
Period size: 27 Copynumber: 9.0 Consensus size: 26
90307971 CTACCCTACA
* * ** *
90307981 GGGGTATCTCGGTAATTTTGTAAACTG
1 GGGGTATTTCAGTAATTTTACAAA-TC
*
90308008 GGGGTATTTCAGTAATTTCACAAATC
1 GGGGTATTTCAGTAATTTTACAAATC
** *
90308034 GGGAGTATTTTGGTAATTTTACAAATTG
1 GGG-GTATTTCAGTAATTTTACAAA-TC
*
90308062 GGGGTATTT-TGATAA-TTTACAAATC
1 GGGGTATTTCAG-TAATTTTACAAATC
* *
90308087 GGGGGGATTTCAGTAATTTTACAAATT
1 -GGGGTATTTCAGTAATTTTACAAATC
*
90308114 GGAGGTATTTCTGTAATTTTACAAATC
1 GG-GGTATTTCAGTAATTTTACAAATC
*
90308141 GAGGGTATTTC-GATAGTTTTACAAATC
1 G-GGGTATTTCAG-TAATTTTACAAATC
* *
90308168 GAGGGTA-TTCTAGTAATTTCACAAATT
1 G-GGGTATTTC-AGTAATTTTACAAATC
*
90308195 GAGGGTATTTTC-GTAATTTTAAAAAT
1 G-GGGTA-TTTCAGTAATTTTACAAAT
90308221 TAGAGGTATT
Statistics
Matches: 176, Mismatches: 24, Indels: 26
0.78 0.11 0.12
Matches are distributed among these distances:
25 1 0.01
26 30 0.17
27 136 0.77
28 6 0.03
29 3 0.02
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (26 bp):
GGGGTATTTCAGTAATTTTACAAATC
Found at i:90308049 original size:54 final size:54
Alignment explanation
Indices: 90307982--90308231 Score: 249
Period size: 54 Copynumber: 4.6 Consensus size: 54
90307972 TACCCTACAG
* ** *
90307982 GGGTATCTCGGTAATTTTGTAAACTGGGGGTATTTCAGTAATTTCACAAATCG-
1 GGGTATTTCGGTAATTTTACAAATTGGGGGTATTTCAGTAATTTCACAAATCGA
* * *
90308035 GGAGTATTTTGGTAATTTTACAAATTGGGGGTATTT-TGATAATTT-ACAAATCGG
1 GG-GTATTTCGGTAATTTTACAAATTGGGGGTATTTCAG-TAATTTCACAAATCGA
* * * * *
90308089 GGGGATTTCAGTAATTTTACAAATTGGAGGTATTTCTGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATTGGGGGTATTTCAGTAATTTCACAAATCGA
* * * * *
90308143 GGGTATTTCGATAGTTTTACAAATCGAGGGTA-TTCTAGTAATTTCACAAATTGA
1 GGGTATTTCGGTAATTTTACAAATTGGGGGTATTTC-AGTAATTTCACAAATCGA
* * *
90308197 GGGTATTTTC-GTAATTTTAAAAATTAGAGGTATTT
1 GGGTA-TTTCGGTAATTTTACAAATTGGGGGTATTT
90308232 TGGTGATTTA
Statistics
Matches: 161, Mismatches: 28, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
53 49 0.30
54 106 0.66
55 6 0.04
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (54 bp):
GGGTATTTCGGTAATTTTACAAATTGGGGGTATTTCAGTAATTTCACAAATCGA
Found at i:90308123 original size:80 final size:80
Alignment explanation
Indices: 90308007--90308246 Score: 274
Period size: 80 Copynumber: 3.0 Consensus size: 80
90307997 TTTGTAAACT
*
90308007 GGGGGTATTTCAGTAATTTCACAAATCGG-GAGTATTTTGGTAATTTTACAAATTGGGGGTATTT
1 GGGGGTATTTCAGTAATTTCACAAATTGGAG-GTATTTT-GTAATTTTACAAATTGGGGGTATTT
90308071 TGATA-ATTTACAAATC
64 TGATAGATTTACAAATC
* * * * *
90308087 GGGGGGATTTCAGTAATTTTACAAATTGGAGGTATTTCTGTAATTTTACAAATCGAGGGTATTTC
1 GGGGGTATTTCAGTAATTTCACAAATTGGAGGTATTT-TGTAATTTTACAAATTGGGGGTATTTT
*
90308152 GATAGTTTTACAAATC
65 GATAGATTTACAAATC
* * * *
90308168 GAGGGTA-TTCTAGTAATTTCACAAATT-GAGGGTATTTTCGTAATTTTAAAAATTAGAGGTATT
1 GGGGGTATTTC-AGTAATTTCACAAATTGGA-GGTATTTT-GTAATTTTACAAATTGGGGGTATT
* *
90308231 TTGGT-GATTTAGAAAT
63 TTGATAGATTTACAAAT
90308247 TGGAAGTCTT
Statistics
Matches: 135, Mismatches: 19, Indels: 12
0.81 0.11 0.07
Matches are distributed among these distances:
80 74 0.55
81 61 0.45
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (80 bp):
GGGGGTATTTCAGTAATTTCACAAATTGGAGGTATTTTGTAATTTTACAAATTGGGGGTATTTTG
ATAGATTTACAAATC
Found at i:90308221 original size:27 final size:27
Alignment explanation
Indices: 90308009--90308232 Score: 187
Period size: 27 Copynumber: 8.3 Consensus size: 27
90307999 TGTAAACTGG
* *
90308009 GGGTA-TTTCAGTAATTTCACAAATCG-
1 GGGTATTTTC-GTAATTTTACAAATTGA
* *
90308035 GGAGTATTTTGGTAATTTTACAAATTGG
1 GG-GTATTTTCGTAATTTTACAAATTGA
* *
90308063 GGGTATTTT-GATAA-TTTACAAATCGG
1 GGGTATTTTCG-TAATTTTACAAATTGA
*
90308089 GGGGA-TTTCAGTAATTTTACAAATTG-
1 GGGTATTTTC-GTAATTTTACAAATTGA
*
90308115 GAGGTA-TTTCTGTAATTTTACAAATCGA
1 G-GGTATTTTC-GTAATTTTACAAATTGA
* *
90308143 GGGTA-TTTCGATAGTTTTACAAATCGA
1 GGGTATTTTCG-TAATTTTACAAATTGA
* * *
90308170 GGGTATTCTAGTAATTTCACAAATTGA
1 GGGTATTTTCGTAATTTTACAAATTGA
*
90308197 GGGTATTTTCGTAATTTTAAAAATT-A
1 GGGTATTTTCGTAATTTTACAAATTGA
90308223 GAGGTATTTT
1 G-GGTATTTT
90308233 GGTGATTTAG
Statistics
Matches: 167, Mismatches: 19, Indels: 23
0.80 0.09 0.11
Matches are distributed among these distances:
25 3 0.02
26 25 0.15
27 130 0.78
28 9 0.05
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
GGGTATTTTCGTAATTTTACAAATTGA
Found at i:90311781 original size:238 final size:238
Alignment explanation
Indices: 90311363--90311833 Score: 834
Period size: 238 Copynumber: 2.0 Consensus size: 238
90311353 GCTTATAGAG
* * *
90311363 CAAAAAATAATAGACTCAAGGAAGGGGAAGAGAAATCTGCCTTGGGTTTTGCATCAAATTTTAGT
1 CAAAAAATAACAGACTCAAGGAAGGGGAAGAGAAATCTACCTTGGGTTTTGCATCAAATTTCAGT
* *
90311428 ATTAAAATGAAAGTTGGAGTAGTGAAAGCTTTCTGCAATTCTGCCTTTATTTTCTGATTTGAACT
66 ATTAAAATAAAAGTTGGAGTAGTGAAAGCTTTCTACAATTCTGCCTTTATTTTCTGATTTGAACT
*
90311493 TTGTGATTCGTAAACTTGAATGATGATGTTGAATGATTTTATTTTGGATTTGAATGTCCAATCCA
131 TTGTGATTCGTAAACTTGAATGATGATGTTGAATGATTTTATTTTGGATTTGAATGCCCAATCCA
90311558 TGAACTAAATCTCATTAGGTTGGAATTATTTGGGTGAACAGAA
196 TGAACTAAATCTCATTAGGTTGGAATTATTTGGGTGAACAGAA
*
90311601 CAAAAAATCACAGACTCAAGGAAGGGGAAGAGAAATCTACCTTGGGTTTTGCATCAAATTTCAGT
1 CAAAAAATAACAGACTCAAGGAAGGGGAAGAGAAATCTACCTTGGGTTTTGCATCAAATTTCAGT
* *
90311666 ATTAAAATAAAAGTTGGAGTTGTGAGAGCTTTCTACAATTCTGCCTTTATTTTCTGATTTGAACT
66 ATTAAAATAAAAGTTGGAGTAGTGAAAGCTTTCTACAATTCTGCCTTTATTTTCTGATTTGAACT
* *
90311731 TTGTGATTTGTAAACTTGAATGATGATGTTGAATGGTTTTATTTTGGATTTGAATGCCCAATCCA
131 TTGTGATTCGTAAACTTGAATGATGATGTTGAATGATTTTATTTTGGATTTGAATGCCCAATCCA
*
90311796 TGAGCTAAATCTCATTAGGTTGGAATTATTTGGGTGAA
196 TGAACTAAATCTCATTAGGTTGGAATTATTTGGGTGAA
90311834 TTTTTACTAT
Statistics
Matches: 221, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
238 221 1.00
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.36
Consensus pattern (238 bp):
CAAAAAATAACAGACTCAAGGAAGGGGAAGAGAAATCTACCTTGGGTTTTGCATCAAATTTCAGT
ATTAAAATAAAAGTTGGAGTAGTGAAAGCTTTCTACAATTCTGCCTTTATTTTCTGATTTGAACT
TTGTGATTCGTAAACTTGAATGATGATGTTGAATGATTTTATTTTGGATTTGAATGCCCAATCCA
TGAACTAAATCTCATTAGGTTGGAATTATTTGGGTGAACAGAA
Found at i:90317948 original size:41 final size:41
Alignment explanation
Indices: 90317826--90317919 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
90317816 TGACTTGGGT
* *
90317826 CACACGACCAGTCACACACCCATGTGCCAACCCGTGTGCCA
1 CACACGACCAGTCACACGCCCATGTGCCAGCCCGTGTGCCA
90317867 CACACGACCAGTCACACGCCCATGTGCCAGCCCGTGTGCCA
1 CACACGACCAGTCACACGCCCATGTGCCAGCCCGTGTGCCA
90317908 CACACGACCAGT
1 CACACGACCAGT
90317920 AGACATGCCC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.26, C:0.44, G:0.19, T:0.12
Consensus pattern (41 bp):
CACACGACCAGTCACACGCCCATGTGCCAGCCCGTGTGCCA
Found at i:90320880 original size:27 final size:27
Alignment explanation
Indices: 90320850--90321027 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
90320840 ATATTGAGTC
* *
90320850 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
90320877 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
90320904 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** *** *
90320932 CGCACACTTAGTGCCGCATGGCCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
90320959 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
90320986 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
90321013 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
90321028 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:90320989 original size:82 final size:81
Alignment explanation
Indices: 90320876--90321026 Score: 232
Period size: 82 Copynumber: 1.9 Consensus size: 81
90320866 TATAATCAAC
* *
90320876 TCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 TCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCACACTT
90320941 AGTGCCGCATGGCCAAT
65 AGTGCCGCATGGCCAAT
* **
90320958 TCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCACACTT
1 TCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTT
90321022 AGTGC
65 AGTGC
90321027 TGTACAATTT
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 16 0.25
82 47 0.75
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.26
Consensus pattern (81 bp):
TCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
GTGCCGCATGGCCAAT
Found at i:90322714 original size:82 final size:82
Alignment explanation
Indices: 90322624--90322788 Score: 321
Period size: 82 Copynumber: 2.0 Consensus size: 82
90322614 TAATAAACGT
90322624 AGAATATAACAATTAATTATTTTCATAACTCGATTTTGTGGTCCCGAAACCACTTCCCGACTAGG
1 AGAATATAACAATTAATTATTTTCATAACTCGATTTTGTGGTCCCGAAACCACTTCCCGACTAGG
90322689 GTCAATTTTGGGCTGTC
66 GTCAATTTTGGGCTGTC
*
90322706 AGAATATAACAATTAATTATTTTCATAACTCGGTTTTGTGGTCCCGAAACCACTTCCCGACTAGG
1 AGAATATAACAATTAATTATTTTCATAACTCGATTTTGTGGTCCCGAAACCACTTCCCGACTAGG
90322771 GTCAATTTTGGGCTGTC
66 GTCAATTTTGGGCTGTC
90322788 A
1 A
90322789 CAACTCTCCC
Statistics
Matches: 82, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 82 1.00
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.34
Consensus pattern (82 bp):
AGAATATAACAATTAATTATTTTCATAACTCGATTTTGTGGTCCCGAAACCACTTCCCGACTAGG
GTCAATTTTGGGCTGTC
Found at i:90329986 original size:40 final size:40
Alignment explanation
Indices: 90329942--90330329 Score: 469
Period size: 40 Copynumber: 9.8 Consensus size: 40
90329932 GCTACTCGTT
*
90329942 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
90329982 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
90330022 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
*
90330061 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
90330101 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
*
90330140 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
90330180 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
*
90330219 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
90330259 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* *
90330298 CAAATGCCTTC-GGATCTTAGTCCGGATATAGT
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGT
90330330 CACTTAGCAT
Statistics
Matches: 301, Mismatches: 26, Indels: 42
0.82 0.07 0.11
Matches are distributed among these distances:
38 2 0.01
39 133 0.44
40 163 0.54
41 3 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:90330324 original size:79 final size:79
Alignment explanation
Indices: 90329944--90330310 Score: 691
Period size: 79 Copynumber: 4.6 Consensus size: 79
90329934 TACTCGTTCA
* *
90329944 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
90330008 TTTAGTAACTCGCACC
64 TTTAGTAACTCGCACC
90330024 AATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT
1 AATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT
90330089 TAGTAACTCGCACC
66 TAGTAACTCGCACC
90330103 AATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT
1 AATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT
90330168 TAGTAACTCGCACC
66 TAGTAACTCGCACC
90330182 AATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT
1 AATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT
90330247 TAGTAACTCGCACC
66 TAGTAACTCGCACC
90330261 AATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGG
1 AATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGG
90330311 ATCTTAGTCC
Statistics
Matches: 284, Mismatches: 2, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
79 271 0.95
80 13 0.05
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (79 bp):
AATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT
TAGTAACTCGCACC
Found at i:90330452 original size:40 final size:41
Alignment explanation
Indices: 90330408--90330513 Score: 155
Period size: 40 Copynumber: 2.6 Consensus size: 41
90330398 GCTACTCATT
* *
90330408 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTTAGCA
*
90330448 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTAGCA
90330489 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
90330514 CATCATTCGA
Statistics
Matches: 60, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
40 50 0.83
41 10 0.17
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTAGCA
Found at i:90337506 original size:79 final size:80
Alignment explanation
Indices: 90337422--90337603 Score: 230
Period size: 79 Copynumber: 2.3 Consensus size: 80
90337412 TACTCGTTCA
* *
90337422 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCC-TCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
90337484 ATTTAGTAAC-TCGCACC
64 ATATAGTAACTTAGCA-C
**
90337501 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
*
90337565 ATAGTCACTTAGCAC
66 ATAGTAACTTAGCAC
*
90337580 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
90337604 CATCATTCGA
Statistics
Matches: 90, Mismatches: 8, Indels: 9
0.84 0.07 0.08
Matches are distributed among these distances:
78 32 0.36
79 43 0.48
80 15 0.17
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:90337603 original size:40 final size:40
Alignment explanation
Indices: 90337401--90337603 Score: 238
Period size: 39 Copynumber: 5.1 Consensus size: 40
90337391 CGGAATTTAA
** *
90337401 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
90337441 CCGGTTATAGTAACTCGCACAAATGCC-TCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
90337480 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
90337519 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
90337559 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
90337599 CCGGA
1 CCGGA
90337604 CATCATTCGA
Statistics
Matches: 140, Mismatches: 15, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
38 2 0.01
39 67 0.48
40 59 0.42
41 12 0.09
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:90339669 original size:40 final size:40
Alignment explanation
Indices: 90339438--90339662 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
90339428 TCGAATGATG
* * * *
90339438 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
90339478 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
90339518 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
90339557 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
90339597 TCCGGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
90339638 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
90339663 AACGAGTAGC
Statistics
Matches: 161, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
39 33 0.20
40 118 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:90339684 original size:119 final size:119
Alignment explanation
Indices: 90339445--90339695 Score: 269
Period size: 119 Copynumber: 2.1 Consensus size: 119
90339435 ATGTCCGGGC
* *
90339445 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCAAAGGCATTTGTGCGAG
* ** *
90339510 ATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCTGGGT
66 ATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATCTCGGT
* * * **
90339564 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCAAAGGCATTTGTGCG
1 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCAAAGGCATTTGTGCG
* * * *
90339627 AGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATC-CGGT
64 AGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAATCTCGGT
* *
90339683 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
90339696 TATGTGATTT
Statistics
Matches: 110, Mismatches: 17, Indels: 10
0.80 0.12 0.07
Matches are distributed among these distances:
118 3 0.03
119 77 0.70
120 30 0.27
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (119 bp):
TAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCAAAGGCATTTGTGCGAG
ATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATCTCGGT
Found at i:90344083 original size:40 final size:40
Alignment explanation
Indices: 90344061--90344208 Score: 190
Period size: 40 Copynumber: 3.7 Consensus size: 40
90344051 AACCAGTACA
*
90344061 AATGCCTTCGGGACTTAACTCGGTTATAATAACCCACACG
1 AATGCCTTCGGGACTTAACTCGGATATAATAACCCACACG
* *
90344101 AATGCCTTCAGGACTTAAC-CCGATTATAATAACCCACACG
1 AATGCCTTCGGGACTTAACTCGGA-TATAATAACCCACACG
* * * * *
90344141 AATGCCTTTGGGACTTAACCCGGTTATAATAGCCCGCACG
1 AATGCCTTCGGGACTTAACTCGGATATAATAACCCACACG
* *
90344181 AATGCCTTCGGGACTTAACCCGGTTATA
1 AATGCCTTCGGGACTTAACTCGGATATA
90344209 TTTTTTTTCC
Statistics
Matches: 96, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
39 2 0.02
40 92 0.96
41 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACTCGGATATAATAACCCACACG
Found at i:90344166 original size:80 final size:80
Alignment explanation
Indices: 90344061--90344208 Score: 242
Period size: 80 Copynumber: 1.9 Consensus size: 80
90344051 AACCAGTACA
*
90344061 AATGCCTTCGGGACTTAACTCGGTTATAATAACCCACACGAATGCCTTCAGGACTTAACCCGATT
1 AATGCCTTCGGGACTTAACCCGGTTATAATAACCCACACGAATGCCTTCAGGACTTAACCCGATT
90344126 ATAATAACCCACACG
66 ATAATAACCCACACG
* * * * *
90344141 AATGCCTTTGGGACTTAACCCGGTTATAATAGCCCGCACGAATGCCTTCGGGACTTAACCCGGTT
1 AATGCCTTCGGGACTTAACCCGGTTATAATAACCCACACGAATGCCTTCAGGACTTAACCCGATT
90344206 ATA
66 ATA
90344209 TTTTTTTTCC
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
80 62 1.00
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAACCCGGTTATAATAACCCACACGAATGCCTTCAGGACTTAACCCGATT
ATAATAACCCACACG
Found at i:90347077 original size:10 final size:10
Alignment explanation
Indices: 90347064--90347109 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
90347054 AGCTCACTTG
90347064 AGCTCGTTTT
1 AGCTCGTTTT
*
90347074 AGCTCGTTTG
1 AGCTCGTTTT
*
90347084 AGCTTGATTTT
1 AGCTCG-TTTT
*
90347095 AGCTCGTTTC
1 AGCTCGTTTT
90347105 AGCTC
1 AGCTC
90347110 ATTTCTTTTC
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
10 22 0.73
11 8 0.27
ACGTcount: A:0.13, C:0.22, G:0.22, T:0.43
Consensus pattern (10 bp):
AGCTCGTTTT
Found at i:90347077 original size:20 final size:21
Alignment explanation
Indices: 90347054--90347099 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
90347044 AACTCCAACC
90347054 AGCTCACTTGAGCTCG-TTTT
1 AGCTCACTTGAGCTCGATTTT
** *
90347074 AGCTCGTTTGAGCTTGATTTT
1 AGCTCACTTGAGCTCGATTTT
90347095 AGCTC
1 AGCTC
90347100 GTTTCAGCTC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 13 0.59
21 9 0.41
ACGTcount: A:0.15, C:0.22, G:0.22, T:0.41
Consensus pattern (21 bp):
AGCTCACTTGAGCTCGATTTT
Found at i:90347096 original size:21 final size:20
Alignment explanation
Indices: 90347061--90347109 Score: 71
Period size: 21 Copynumber: 2.4 Consensus size: 20
90347051 ACCAGCTCAC
90347061 TTGAGCTCGTTTTAGCTCGT
1 TTGAGCTCGTTTTAGCTCGT
*
90347081 TTGAGCTTGATTTTAGCTCGT
1 TTGAGCTCG-TTTTAGCTCGT
*
90347102 TTCAGCTC
1 TTGAGCTC
90347110 ATTTCTTTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
20 8 0.32
21 17 0.68
ACGTcount: A:0.12, C:0.20, G:0.22, T:0.45
Consensus pattern (20 bp):
TTGAGCTCGTTTTAGCTCGT
Found at i:90347355 original size:148 final size:148
Alignment explanation
Indices: 90347087--90347384 Score: 587
Period size: 148 Copynumber: 2.0 Consensus size: 148
90347077 TCGTTTGAGC
90347087 TTGATTTTAGCTCGTTTCAGCTCATTTCTTTTCCATTACAATAAACTAAGCTTAAACTTTGTTTT
1 TTGATTTTAGCTCGTTTCAGCTCATTTCTTTTCCATTACAATAAACTAAGCTTAAACTTTGTTTT
90347152 TAACCTGATTTGCTACAGCCCATGCCGAATTCCCTAGCTCAGTTTAGTTCATTAAGTGTTATTGA
66 TAACCTGATTTGCTACAGCCCATGCCGAATTCCCTAGCTCAGTTTAGTTCATTAAGTGTTATTGA
90347217 TTAATTGAGCTAGCCGAA
131 TTAATTGAGCTAGCCGAA
90347235 TTGATTTTAGCTCGTTTCAGCTCATTTCTTTTCCATTACAATAAACTAAGCTTAAACTTTGTTTT
1 TTGATTTTAGCTCGTTTCAGCTCATTTCTTTTCCATTACAATAAACTAAGCTTAAACTTTGTTTT
*
90347300 TAACCTGATTTGCTACAGCTCATGCCGAATTCCCTAGCTCAGTTTAGTTCATTAAGTGTTATTGA
66 TAACCTGATTTGCTACAGCCCATGCCGAATTCCCTAGCTCAGTTTAGTTCATTAAGTGTTATTGA
90347365 TTAATTGAGCTAGCCGAA
131 TTAATTGAGCTAGCCGAA
90347383 TT
1 TT
90347385 TAATATGCTA
Statistics
Matches: 149, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
148 149 1.00
ACGTcount: A:0.26, C:0.20, G:0.14, T:0.41
Consensus pattern (148 bp):
TTGATTTTAGCTCGTTTCAGCTCATTTCTTTTCCATTACAATAAACTAAGCTTAAACTTTGTTTT
TAACCTGATTTGCTACAGCCCATGCCGAATTCCCTAGCTCAGTTTAGTTCATTAAGTGTTATTGA
TTAATTGAGCTAGCCGAA
Found at i:90349198 original size:47 final size:47
Alignment explanation
Indices: 90349128--90349243 Score: 196
Period size: 47 Copynumber: 2.5 Consensus size: 47
90349118 TCCATAAGTG
90349128 AACTCGGACTCAACTCAACGAGCTCGGATGCCTAATTACATCTCACA
1 AACTCGGACTCAACTCAACGAGCTCGGATGCCTAATTACATCTCACA
* * *
90349175 AACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTTACATCTCACG
1 AACTCGGACTCAACTCAACGAGCTCGGATGCCTAATTACATCTCACA
*
90349222 AACTCGAACTCAACTCAACGAG
1 AACTCGGACTCAACTCAACGAG
90349244 TTCAGGATTC
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 64 1.00
ACGTcount: A:0.32, C:0.31, G:0.16, T:0.21
Consensus pattern (47 bp):
AACTCGGACTCAACTCAACGAGCTCGGATGCCTAATTACATCTCACA
Found at i:90352066 original size:67 final size:67
Alignment explanation
Indices: 90351927--90352104 Score: 168
Period size: 70 Copynumber: 2.6 Consensus size: 67
90351917 ACCACCCATT
* * *
90351927 TGACCTAGCCA-ATTTATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACA
1 TGACCTAGCTACATTTATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTTGGAATCACACA
90351991 TG
66 TG
** *
90351993 CCACCTAGCTACATTTATCTCTCCGTAGCTCTCTTGTCTACATGG-GATACATC-C-T-GTATCA
1 TGACCTAGCTACATTTA--TCT-CGTAGCTCTCTTGTCTACATGGTG-TACATCACTTGGAATCA
90352054 CACATG
62 CACATG
* * *
90352060 TGACCTAGCTACTACATAGTATCTCGTATCTCTCTTGTATACATG
1 TGACCTAG---CTACAT-TTATCTCGTAGCTCTCTTGTCTACATG
90352105 ATGTGCACTT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
66 8 0.09
67 22 0.24
68 20 0.22
69 8 0.09
70 32 0.35
71 2 0.02
ACGTcount: A:0.22, C:0.28, G:0.15, T:0.35
Consensus pattern (67 bp):
TGACCTAGCTACATTTATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTTGGAATCACACA
TG
Found at i:90357263 original size:47 final size:47
Alignment explanation
Indices: 90357193--90357308 Score: 196
Period size: 47 Copynumber: 2.5 Consensus size: 47
90357183 TCCATAAGTG
90357193 AACTCGGACTCAACTCAACGAGCTCGGATGCCTAATTACATCTCACA
1 AACTCGGACTCAACTCAACGAGCTCGGATGCCTAATTACATCTCACA
* * *
90357240 AACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTTACATCTCACG
1 AACTCGGACTCAACTCAACGAGCTCGGATGCCTAATTACATCTCACA
*
90357287 AACTCGAACTCAACTCAACGAG
1 AACTCGGACTCAACTCAACGAG
90357309 TTCAGGATTC
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 64 1.00
ACGTcount: A:0.32, C:0.31, G:0.16, T:0.21
Consensus pattern (47 bp):
AACTCGGACTCAACTCAACGAGCTCGGATGCCTAATTACATCTCACA
Found at i:90358345 original size:60 final size:60
Alignment explanation
Indices: 90358268--90358380 Score: 217
Period size: 60 Copynumber: 1.9 Consensus size: 60
90358258 AAATTGGCTT
90358268 TTAATTTTGTTTCTAATTCATTTTAATAACTAAATGACCAAAATGCCCTTACTACTAAAC
1 TTAATTTTGTTTCTAATTCATTTTAATAACTAAATGACCAAAATGCCCTTACTACTAAAC
*
90358328 TTAATTTTGTTTTTAATTCATTTTAATAACTAAATGACCAAAATGCCCTTACT
1 TTAATTTTGTTTCTAATTCATTTTAATAACTAAATGACCAAAATGCCCTTACT
90358381 TAAAAACTAT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 52 1.00
ACGTcount: A:0.35, C:0.17, G:0.05, T:0.42
Consensus pattern (60 bp):
TTAATTTTGTTTCTAATTCATTTTAATAACTAAATGACCAAAATGCCCTTACTACTAAAC
Found at i:90366162 original size:184 final size:184
Alignment explanation
Indices: 90365845--90366204 Score: 621
Period size: 184 Copynumber: 2.0 Consensus size: 184
90365835 GCAATTATGA
*
90365845 CATGTAACAAAATAACTAAGCCTACTATACATGCCATAATTCAAAATGTTTAGTTCAAATACGCA
1 CATGTAACAAAATAACTAAGCCTACTATACATGCCATAATTCAAAATGTTTAGTTCAAATACCCA
* * *
90365910 AAAGTATTGATAGTCCGGGCAGATCTTCAACGATCCTTAACTCCTATGCAAGCTGGACGGCCCTA
66 AAAGTATTGATAGTCCGAGCAGATCTTCAACGATCCTTAACTCCTATGCAAGCTGGACGACACTA
* *
90365975 TAAGACAAAAGAGAGAAAAGAAAGTAAGCTTATATCTAAGTAAGTATATAAATC
131 TAAGACAAAAGAGAGAAAAAAAAGTAAGCTTATAGCTAAGTAAGTATATAAATC
90366029 CATGTAACAAAATAACTAAGCCTACTATACATGCCATAATTCAAAATGTTTAGTTCAAATACCCA
1 CATGTAACAAAATAACTAAGCCTACTATACATGCCATAATTCAAAATGTTTAGTTCAAATACCCA
* * * *
90366094 AAAGTATTGATAGTGCGAGCAGATCTTCAATGATCCTTAACTCCTGTGCAGGCTGGACGACACTA
66 AAAGTATTGATAGTCCGAGCAGATCTTCAACGATCCTTAACTCCTATGCAAGCTGGACGACACTA
*
90366159 TAAGACAAAAGAGAGAAAAAAAAGTAAGCTTATAGCTTAGTAAGTA
131 TAAGACAAAAGAGAGAAAAAAAAGTAAGCTTATAGCTAAGTAAGTA
90366205 AGTATATAAA
Statistics
Matches: 165, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
184 165 1.00
ACGTcount: A:0.41, C:0.18, G:0.16, T:0.25
Consensus pattern (184 bp):
CATGTAACAAAATAACTAAGCCTACTATACATGCCATAATTCAAAATGTTTAGTTCAAATACCCA
AAAGTATTGATAGTCCGAGCAGATCTTCAACGATCCTTAACTCCTATGCAAGCTGGACGACACTA
TAAGACAAAAGAGAGAAAAAAAAGTAAGCTTATAGCTAAGTAAGTATATAAATC
Found at i:90370366 original size:19 final size:20
Alignment explanation
Indices: 90370323--90370375 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
90370313 TGGATGTGAA
*
90370323 AAAAAGAAAAGAAAAATGAG
1 AAAAAGAAAACAAAAATGAG
*
90370343 AAAAAGAACACAAAAAT-AG
1 AAAAAGAAAACAAAAATGAG
*
90370362 CAAAAGAAAA-AAAA
1 AAAAAGAAAACAAAA
90370376 GAACAAGTGA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
18 4 0.14
19 10 0.34
20 15 0.52
ACGTcount: A:0.77, C:0.06, G:0.13, T:0.04
Consensus pattern (20 bp):
AAAAAGAAAACAAAAATGAG
Found at i:90373435 original size:20 final size:20
Alignment explanation
Indices: 90373419--90373471 Score: 79
Period size: 21 Copynumber: 2.6 Consensus size: 20
90373409 ACCAGCTCAC
90373419 TTGAGCTCATTTTAGCTCGT
1 TTGAGCTCATTTTAGCTCGT
*
90373439 TTGAGCTTGATTTTAGCTCGT
1 TTGAGC-TCATTTTAGCTCGT
*
90373460 TTCAGCTCATTT
1 TTGAGCTCATTT
90373472 CTTTTCCATT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 11 0.38
21 18 0.62
ACGTcount: A:0.15, C:0.19, G:0.19, T:0.47
Consensus pattern (20 bp):
TTGAGCTCATTTTAGCTCGT
Found at i:90375446 original size:20 final size:21
Alignment explanation
Indices: 90375413--90375452 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
90375403 AGCTTAATGG
*
90375413 AGCTCAATTCAGCTTGATTCT
1 AGCTCAATTCAGCTCGATTCT
*
90375434 AGCTC-ATTGAGCTCGATTC
1 AGCTCAATTCAGCTCGATTC
90375453 CATTATTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (21 bp):
AGCTCAATTCAGCTCGATTCT
Found at i:90378023 original size:50 final size:51
Alignment explanation
Indices: 90377946--90378317 Score: 385
Period size: 50 Copynumber: 7.4 Consensus size: 51
90377936 CACCCTTGTA
* *
90377946 ACCGAAGCTCTCTGGTACGCATAGTAGCCTGCA-TTAGTACTACACACGTG
1 ACCGAAGCTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTG
* ** * *
90377996 ATCGAAGCTATCTGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCG
1 ACCGAAGCTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTG
* * * *
90378047 ACCTAA-CAATCTGGTACACGTGGTAGCCTGCACTTAGTACTACACACGTG
1 ACCGAAGCTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTG
* * * * * *
90378097 ATCGAAGCTATCGGGTACACATAGTAGCTTGCAGTTAGTACTACACATGTA
1 ACCGAAGCTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTG
* * * *
90378148 ACCTAA-CAATCTGGTACACGTAGTAGACTGCACTTAGTACTACACACGTG
1 ACCGAAGCTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTG
* * * * * * *
90378198 ACCTAA-CCATCTGATACACGTAGTAGTCTACACTTAGTACTACAGACGTG
1 ACCGAAGCTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTG
* * * * * *
90378248 ATCGAAGCTATCGGGTACGCATAATAGCCTGCACTTAGTACTACACATGCG
1 ACCGAAGCTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTG
* *
90378299 ACCTAA-CAATCTGGTACAC
1 ACCGAAGCTATCTGGTACAC
90378318 GTGACCTAAA
Statistics
Matches: 262, Mismatches: 57, Indels: 6
0.81 0.18 0.02
Matches are distributed among these distances:
50 166 0.63
51 96 0.37
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.25
Consensus pattern (51 bp):
ACCGAAGCTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTG
Found at i:90378232 original size:151 final size:150
Alignment explanation
Indices: 90377948--90378319 Score: 510
Period size: 151 Copynumber: 2.5 Consensus size: 150
90377938 CCCTTGTAAC
* * * * * *
90377948 CGAAGCTCTCTGGTACGCATAGTAGCCTGCATTAGTACTACACACGTGATCGAAGCTATCTGGTA
1 CGAAGCTATCGGGTACGCATAGTAGCCTGCATTAGTACTACACATGTGACCTAA-CAATCTGGTA
** * * * * * *
90378013 TGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACGTGGTAGCCTGC
65 CACGTAGTAGACTGCACTTAGTACTACACACGCGACCTAACAATCTGATACACGTAGTAGCCTAC
90378078 ACTTAGTACTACACACGTGAT
130 ACTTAGTACTACACACGTGAT
* * *
90378099 CGAAGCTATCGGGTACACATAGTAGCTTGCAGTTAGTACTACACATGTAACCTAACAATCTGGTA
1 CGAAGCTATCGGGTACGCATAGTAGCCTGCA-TTAGTACTACACATGTGACCTAACAATCTGGTA
* * *
90378164 CACGTAGTAGACTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGTCTAC
65 CACGTAGTAGACTGCACTTAGTACTACACACGCGACCTAACAATCTGATACACGTAGTAGCCTAC
*
90378229 ACTTAGTACTACAGACGTGAT
130 ACTTAGTACTACACACGTGAT
* *
90378250 CGAAGCTATCGGGTACGCATAATAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTA
1 CGAAGCTATCGGGTACGCATAGTAGCCTGCA-TTAGTACTACACATGTGACCTAACAATCTGGTA
90378315 CACGT
65 CACGT
90378320 GACCTAAAAC
Statistics
Matches: 193, Mismatches: 27, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
151 174 0.90
152 19 0.10
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (150 bp):
CGAAGCTATCGGGTACGCATAGTAGCCTGCATTAGTACTACACATGTGACCTAACAATCTGGTAC
ACGTAGTAGACTGCACTTAGTACTACACACGCGACCTAACAATCTGATACACGTAGTAGCCTACA
CTTAGTACTACACACGTGAT
Found at i:90378319 original size:101 final size:100
Alignment explanation
Indices: 90377956--90378317 Score: 388
Period size: 101 Copynumber: 3.6 Consensus size: 100
90377946 ACCGAAGCTC
* * **
90377956 TCTGGTACGCATAGTAGCCTGCA-TTAGTACTACACACGTGATCGAAGCTATCTGGTATGCATAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCGAAGCTATCTGGTACACATAG
* *
90378020 TAGCCTGCACTTAGTACTACACATGCGACCTAACAA
66 TAG-CTGCACTTAGTACTACACATGTGACCGAACAA
* * * *
90378056 TCTGGTACACGTGGTAGCCTGCACTTAGTACTACACACGTGATCGAAGCTATCGGGTACACATAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCGAAGCTATCTGGTACACATAG
* * *
90378121 TAGCTTGCAGTTAGTACTACACATGTAACCTAACAA
66 TAGC-TGCACTTAGTACTACACATGTGACCGAACAA
* * * * * *
90378157 TCTGGTACACGTAGTAGACTGCACTTAGTACTACACACGTGACCTAA-CCATCTGATACACGTAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCGAAGCTATCTGGTACACATAG
* * * * *
90378221 TAGTCTACACTTAGTACTACAGACGTGATCGAAGCTA
66 TAG-CTGCACTTAGTACTACACATGTGACCGAA-CAA
* * * * * * *
90378258 TCGGGTACGCATAATAGCCTGCACTTAGTACTACACATGCGACCTAA-CAATCTGGTACAC
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCGAAGCTATCTGGTACAC
90378318 GTGACCTAAA
Statistics
Matches: 224, Mismatches: 34, Indels: 7
0.85 0.13 0.03
Matches are distributed among these distances:
100 58 0.26
101 166 0.74
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (100 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCGAAGCTATCTGGTACACATAG
TAGCTGCACTTAGTACTACACATGTGACCGAACAA
Found at i:90380366 original size:18 final size:18
Alignment explanation
Indices: 90380332--90380373 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
90380322 ACAGAATGAT
* *
90380332 TGACTGTTATTGAATAAG
1 TGACTGTTATTCAATAAC
*
90380350 TGACTGTTATTCCATAAC
1 TGACTGTTATTCAATAAC
90380368 TGACTG
1 TGACTG
90380374 CTATAGAGTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.29, C:0.14, G:0.19, T:0.38
Consensus pattern (18 bp):
TGACTGTTATTCAATAAC
Found at i:90381636 original size:6 final size:6
Alignment explanation
Indices: 90381618--90381708 Score: 71
Period size: 6 Copynumber: 14.8 Consensus size: 6
90381608 AAGAAACATT
* *
90381618 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- TTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * *
90381667 ATCAAA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAG
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAG
90381709 TATCGGGTAA
Statistics
Matches: 67, Mismatches: 10, Indels: 16
0.72 0.11 0.17
Matches are distributed among these distances:
5 4 0.06
6 55 0.82
7 6 0.09
8 2 0.03
ACGTcount: A:0.48, C:0.15, G:0.16, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:90381663 original size:31 final size:31
Alignment explanation
Indices: 90381627--90381737 Score: 132
Period size: 31 Copynumber: 3.5 Consensus size: 31
90381617 TATCAGAACT
* * *
90381627 AGAATCAGAATCAGAATCAGAATTAGTTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* *
90381658 AGAATCAGAATCAAAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* * *
90381689 AGAATCAAAATCAGAATCAGTATCGGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
90381720 AGAATCAAAAATCAGAAT
1 AGAATC-AGAATCAGAAT
90381738 GTGAATGCAA
Statistics
Matches: 71, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
31 60 0.85
32 11 0.15
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:90381916 original size:27 final size:26
Alignment explanation
Indices: 90381874--90381975 Score: 96
Period size: 27 Copynumber: 3.8 Consensus size: 26
90381864 GCTCAGTTAT
* **
90381874 CAGATATTGTGACAGAGTTACCAAATA
1 CAGATATTGTGGCAGAGCCACCAAA-A
*
90381901 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAAAA
*
90381927 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCA-AAA
* * * *
90381955 CAAATAATGCGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
90381976 TTAACAGAAT
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
26 7 0.11
27 49 0.78
28 7 0.11
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAAAA
Found at i:90382764 original size:81 final size:81
Alignment explanation
Indices: 90382625--90382813 Score: 290
Period size: 81 Copynumber: 2.3 Consensus size: 81
90382615 GGGGAAAAAT
* * *
90382625 GGTAATTTTACCCCACA-AGGTATCTCAGTAATTCCACCCTATAGGGGTATTTTAGTAATTCTAC
1 GGTAATTCTACCCCACAGGGGTATTTCAGTAATTCCACCCTATAGGGGTATTTTAGTAATTCTAC
90382689 CCTACAGAGGTATTGC
66 CCTACAGAGGTATTGC
* * * *
90382705 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTTGGTAATTCTAC
1 GGTAATTCTACCCCACAGGGGTATTTCAGTAATTCCACCCTATAGGGGTATTTTAGTAATTCTAC
* *
90382770 CCTACAGGGGTATTTC
66 CCTACAGAGGTATTGC
90382786 GGTAATTCTACCCCACAGGGGTATTTCA
1 GGTAATTCTACCCCACAGGGGTATTTCA
90382814 AGAATTTCAC
Statistics
Matches: 97, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
80 15 0.15
81 82 0.85
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (81 bp):
GGTAATTCTACCCCACAGGGGTATTTCAGTAATTCCACCCTATAGGGGTATTTTAGTAATTCTAC
CCTACAGAGGTATTGC
Found at i:90382819 original size:27 final size:27
Alignment explanation
Indices: 90382625--90382812 Score: 243
Period size: 27 Copynumber: 7.0 Consensus size: 27
90382615 GGGGAAAAAT
* * * *
90382625 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
90382651 AGTAATTCCACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
90382678 AGTAATTCTACCCTACAGAGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
90382705 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
90382732 GGTAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
90382759 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
90382786 GGTAATTCTACCCCACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
90382813 AAGAATTTCA
Statistics
Matches: 140, Mismatches: 21, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
26 12 0.09
27 128 0.91
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:90382858 original size:27 final size:27
Alignment explanation
Indices: 90382827--90382967 Score: 176
Period size: 27 Copynumber: 5.2 Consensus size: 27
90382817 ATTTCACAAC
*
90382827 CGAGGGTAAAACGGTAATTTTGTAAA-
1 CGAGGGTAAAACGGTAATTTTATAAAT
*
90382853 CTGAGGGTAAAATGGTAATTTTATAAAT
1 C-GAGGGTAAAACGGTAATTTTATAAAT
*
90382881 CGAGGGTAAAACGGTAATTTTGTAAAT
1 CGAGGGTAAAACGGTAATTTTATAAAT
* * *
90382908 CAAGGGTGAAACGGTAATTCTATAAAT
1 CGAGGGTAAAACGGTAATTTTATAAAT
* * *
90382935 CGAGGGTAAAATGGTAATTCTACAAAT
1 CGAGGGTAAAACGGTAATTTTATAAAT
*
90382962 AGAGGG
1 CGAGGG
90382968 CATTTCAGTA
Statistics
Matches: 100, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
26 1 0.01
27 98 0.98
28 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.26, T:0.28
Consensus pattern (27 bp):
CGAGGGTAAAACGGTAATTTTATAAAT
Found at i:90382979 original size:81 final size:81
Alignment explanation
Indices: 90382829--90382987 Score: 194
Period size: 81 Copynumber: 2.0 Consensus size: 81
90382819 TTCACAACCG
* * * * * * *
90382829 AGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACG
1 AGGGTAAAACGGTAATTCTATAAACTGAGGGTAAAATGGTAATTCTACAAATAGAGGGCAAAACA
*
90382894 GTAATTTTGTAAATCA
66 GTAATTTGGTAAATCA
* ***
90382910 AGGGTGAAACGGTAATTCTATAAA-TCGAGGGTAAAATGGTAATTCTACAAATAGAGGGCATTTC
1 AGGGTAAAACGGTAATTCTATAAACT-GAGGGTAAAATGGTAATTCTACAAATAGAGGGCAAAAC
90382974 AGTAATTTGGTAAA
65 AGTAATTTGGTAAA
90382988 CTAAAGTATT
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
80 1 0.02
81 64 0.98
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.30
Consensus pattern (81 bp):
AGGGTAAAACGGTAATTCTATAAACTGAGGGTAAAATGGTAATTCTACAAATAGAGGGCAAAACA
GTAATTTGGTAAATCA
Found at i:90383059 original size:28 final size:28
Alignment explanation
Indices: 90383019--90383082 Score: 101
Period size: 28 Copynumber: 2.3 Consensus size: 28
90383009 TAATAATGCG
* * *
90383019 AATGGTCCCAAAGGCTATTCTCGGCCCA
1 AATGGGCCCAAAGCCTATTCTCAGCCCA
90383047 AATGGGCCCAAAGCCTATTCTCAGCCCA
1 AATGGGCCCAAAGCCTATTCTCAGCCCA
90383075 AATGGGCC
1 AATGGGCC
90383083 TACACGCTCG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.27, C:0.33, G:0.22, T:0.19
Consensus pattern (28 bp):
AATGGGCCCAAAGCCTATTCTCAGCCCA
Found at i:90385308 original size:26 final size:26
Alignment explanation
Indices: 90385272--90385322 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
90385262 AAGCGTAAAA
90385272 ATCATTAAAAACGGGGCTAGAACAGG
1 ATCATTAAAAACGGGGCTAGAACAGG
90385298 ATCATTAAAAACGGGGCTAGAACAG
1 ATCATTAAAAACGGGGCTAGAACAG
90385323 ACCTATAATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.43, C:0.16, G:0.25, T:0.16
Consensus pattern (26 bp):
ATCATTAAAAACGGGGCTAGAACAGG
Found at i:90387244 original size:15 final size:15
Alignment explanation
Indices: 90387210--90387269 Score: 57
Period size: 15 Copynumber: 4.0 Consensus size: 15
90387200 TATAGATAAC
* * *
90387210 AAGAAAACCAGGATT
1 AAGAAATCCAAGATA
*
90387225 AAGAAGTCCAAGATA
1 AAGAAATCCAAGATA
* *
90387240 GAGAAATCCAAAATA
1 AAGAAATCCAAGATA
*
90387255 AAGAAATCTAAGATA
1 AAGAAATCCAAGATA
90387270 CAATATCATA
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
15 35 1.00
ACGTcount: A:0.57, C:0.12, G:0.17, T:0.15
Consensus pattern (15 bp):
AAGAAATCCAAGATA
Found at i:90394297 original size:78 final size:78
Alignment explanation
Indices: 90394168--90394323 Score: 294
Period size: 78 Copynumber: 2.0 Consensus size: 78
90394158 TATTTGTTTA
*
90394168 ATTAAGCTCAAGAGCAAAGGGGAACTAAATCCGGTAAAAGGAAGGAAAAAGTGGTCGAATAGCTA
1 ATTAAGCTCAAGAGCAAAGGGGAACTAAATCCGATAAAAGGAAGGAAAAAGTGGTCGAATAGCTA
90394233 TCGGAATCGTTCG
66 TCGGAATCGTTCG
*
90394246 ATTAAGCTCAAGAGCAAAGGGGAACTAAATCCGATAAAGGGAAGGAAAAAGTGGTCGAATAGCTA
1 ATTAAGCTCAAGAGCAAAGGGGAACTAAATCCGATAAAAGGAAGGAAAAAGTGGTCGAATAGCTA
90394311 TCGGAATCGTTCG
66 TCGGAATCGTTCG
90394324 GCAACACCCG
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
78 76 1.00
ACGTcount: A:0.40, C:0.14, G:0.28, T:0.18
Consensus pattern (78 bp):
ATTAAGCTCAAGAGCAAAGGGGAACTAAATCCGATAAAAGGAAGGAAAAAGTGGTCGAATAGCTA
TCGGAATCGTTCG
Found at i:90394637 original size:39 final size:41
Alignment explanation
Indices: 90394534--90394717 Score: 199
Period size: 40 Copynumber: 4.6 Consensus size: 41
90394524 TTGAATGCTG
*
90394534 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATA
* *
90394573 TCCGGACTAAGAT-CCAAAGGCATTTGTGCG-AGATACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAAG-TACTAATA
90394613 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATA
* *
90394652 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
* *
90394692 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
90394718 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 11, Indels: 19
0.81 0.07 0.12
Matches are distributed among these distances:
39 52 0.42
40 61 0.49
41 11 0.09
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
Found at i:90394672 original size:79 final size:81
Alignment explanation
Indices: 90394534--90394717 Score: 213
Period size: 79 Copynumber: 2.3 Consensus size: 81
90394524 TTGAATGCTG
90394534 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGATCCAAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCAAAGGCATT
90394597 TGTGCGAGA-TACTA-A
66 TGTGCGA-ATTACTATA
* * ** *
90394612 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAA-ATCCGGGTTAAG-TCCCGAAGGC
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCAAAGGC
90394673 ATTTGTGCGAATTACTATA
63 ATTTGTGCGAATTACTATA
* *
90394692 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
90394718 AACGAGGAGC
Statistics
Matches: 91, Mismatches: 7, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
78 11 0.12
79 57 0.63
80 23 0.25
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCAAAGGCATT
TGTGCGAATTACTATA
Done.