Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 27 of 284
Found at i:9359945 original size:81 final size:82
Alignment explanation
Indices: 9359614--9359945 Score: 390
Period size: 81 Copynumber: 4.1 Consensus size: 82
9359604 GGGTATTCCG
* * * *
9359614 GTCATTTTATCATATAAGGG-GAAATCGTCATTTTATCACATAAGGGCAAAATCGTTATTTTATC
1 GTCATTTTATCACATAAGGGCAAAATCGTCATTTTATCACATAAGGGCAAAATCGTCATTTTACC
* *
9359678 ATATAAGGGCAAAATTA
66 ATATAGGGGCAAAATCA
* * *
9359695 -TCATTTTATCACATAAGGGAAAAATCATCATTTTATCACATGAGGGCAAAATCGTCATTTTATC
1 GTCATTTTATCACATAAGGGCAAAATCGTCATTTTATCACATAAGGGCAAAATCGTCATTTTA-C
9359759 ACATATA--GGCAAAATC-
65 -CATATAGGGGCAAAATCA
** * * * *
9359775 GTCATTTTATCACACGAGGACAAAATCGTCATTTTATCACATAAGGGAAAAATCATCATTTTATC
1 GTCATTTTATCACATAAGGGCAAAATCGTCATTTTATCACATAAGGGCAAAATCGTCATTTTACC
*
9359840 ACATAGGGGCAAAATCA
66 ATATAGGGGCAAAATCA
* * * *
9359857 -TCGTTTTATCACAAAAGGGCAAAATCGTCATTTTATCACATAAGGGCAAAATCGTTAATTTACC
1 GTCATTTTATCACATAAGGGCAAAATCGTCATTTTATCACATAAGGGCAAAATCGTCATTTTACC
* **
9359921 ATGTAGGGGC-ATTTCA
66 ATATAGGGGCAAAATCA
9359937 GTCATTTTA
1 GTCATTTTA
9359946 CCAACTAGGG
Statistics
Matches: 212, Mismatches: 31, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
79 5 0.02
80 22 0.10
81 179 0.84
83 6 0.03
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (82 bp):
GTCATTTTATCACATAAGGGCAAAATCGTCATTTTATCACATAAGGGCAAAATCGTCATTTTACC
ATATAGGGGCAAAATCA
Found at i:9362360 original size:39 final size:40
Alignment explanation
Indices: 9362209--9362378 Score: 198
Period size: 40 Copynumber: 4.3 Consensus size: 40
9362199 GGACTAAGAT
* * * *
9362209 CCGAAGGCCTTTGTGCGAGATACTAAATCTGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * *
9362249 CCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
** *
9362289 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * * *
9362329 CCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
9362368 CCGAAGGCATT
1 CCGAAGGCATT
9362379 TGAACGAGGA
Statistics
Matches: 111, Mismatches: 18, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
39 32 0.29
40 79 0.71
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:9362398 original size:79 final size:80
Alignment explanation
Indices: 9362231--9362413 Score: 199
Period size: 79 Copynumber: 2.3 Consensus size: 80
9362221 GTGCGAGATA
* * * * *
9362231 CTAAATCTGGGTTAAGTCCCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
9362296 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * * *
9362311 TTAAATCCGGGTTACGTCCCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
9362375 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
9362390 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
9362414 TACGTGATTT
Statistics
Matches: 84, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
78 14 0.17
79 47 0.56
80 23 0.27
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:9370188 original size:40 final size:40
Alignment explanation
Indices: 9370132--9370301 Score: 198
Period size: 40 Copynumber: 4.3 Consensus size: 40
9370122 GGACTAAGAT
* * *
9370132 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * *
9370172 CCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* ** *
9370212 CCGAAGGCAGTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * * *
9370252 CCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
9370291 CCGAAGGCATT
1 CCGAAGGCATT
9370302 TGAACGAGGA
Statistics
Matches: 111, Mismatches: 18, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
39 32 0.29
40 79 0.71
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.24
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:9370228 original size:80 final size:79
Alignment explanation
Indices: 9370144--9370299 Score: 204
Period size: 79 Copynumber: 2.0 Consensus size: 79
9370134 GAAGGCCTTT
* * * *
9370144 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAA
1 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCA-TCGTGCGAGTTACTAAAACCGGGCTAA
9370209 GTCCCGAAGGCAGTC
65 GTCCCGAAGGCAGTC
* ** * * * *
9370224 GTGCGAGTTGTTAAATCCGGGTTACGTCCCGAAGGCATGGTGTGAGTTACTAAAACCGGGCTATG
1 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATCGTGCGAGTTACTAAAACCGGGCTAAG
9370289 TCCCGAAGGCA
66 TCCCGAAGGCA
9370300 TTTGAACGAG
Statistics
Matches: 65, Mismatches: 11, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
79 33 0.51
80 32 0.49
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.23
Consensus pattern (79 bp):
GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATCGTGCGAGTTACTAAAACCGGGCTAAG
TCCCGAAGGCAGTC
Found at i:9370321 original size:79 final size:80
Alignment explanation
Indices: 9370154--9370336 Score: 199
Period size: 79 Copynumber: 2.3 Consensus size: 80
9370144 GTGCGAGATA
* * * *
9370154 CTAAATCCGGGTTAAGTCCCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
9370219 CAGTCGTGCGAGTTG
66 CAGTCGAACGAGGAG
* * * * *
9370234 TTAAATCCGGGTTACGTCCCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
* *
9370298 CATTTGAACGAGGAG
66 CAGTCGAACGAGGAG
* *
9370313 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
9370337 TACGTGATTT
Statistics
Matches: 84, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
78 14 0.17
79 46 0.55
80 24 0.29
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.23
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CAGTCGAACGAGGAG
Found at i:9371989 original size:17 final size:17
Alignment explanation
Indices: 9371961--9371994 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
9371951 AATTAATTAA
9371961 CCAACACTCACTTATCTT
1 CCAACACTCACTT-TCTT
9371979 CCAAC-CTCACTTTCTT
1 CCAACACTCACTTTCTT
9371995 GACCGAGATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 7 0.44
18 5 0.31
ACGTcount: A:0.24, C:0.41, G:0.00, T:0.35
Consensus pattern (17 bp):
CCAACACTCACTTTCTT
Found at i:9372484 original size:21 final size:21
Alignment explanation
Indices: 9372419--9372473 Score: 101
Period size: 21 Copynumber: 2.6 Consensus size: 21
9372409 GTTGAAGAAC
*
9372419 AAAGAAAATAAAATTGTTTTA
1 AAAGAAAATAAAATTGTATTA
9372440 AAAGAAAATAAAATTGTATTA
1 AAAGAAAATAAAATTGTATTA
9372461 AAAGAAAATAAAA
1 AAAGAAAATAAAA
9372474 CTAAATTAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.65, C:0.00, G:0.09, T:0.25
Consensus pattern (21 bp):
AAAGAAAATAAAATTGTATTA
Found at i:9373509 original size:6 final size:6
Alignment explanation
Indices: 9373499--9373552 Score: 81
Period size: 6 Copynumber: 9.0 Consensus size: 6
9373489 TTACCTTCTT
* * *
9373499 CTTCCC TTTCCC CTTCCC CTTCCC TTTCCC CTTCCC CTTCCC TTTCCC
1 CTTCCC CTTCCC CTTCCC CTTCCC CTTCCC CTTCCC CTTCCC CTTCCC
9373547 CTTCCC
1 CTTCCC
9373553 GTTGGGTTGC
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 42 1.00
ACGTcount: A:0.00, C:0.61, G:0.00, T:0.39
Consensus pattern (6 bp):
CTTCCC
Found at i:9373513 original size:18 final size:18
Alignment explanation
Indices: 9373499--9373552 Score: 108
Period size: 18 Copynumber: 3.0 Consensus size: 18
9373489 TTACCTTCTT
9373499 CTTCCCTTTCCCCTTCCC
1 CTTCCCTTTCCCCTTCCC
9373517 CTTCCCTTTCCCCTTCCC
1 CTTCCCTTTCCCCTTCCC
9373535 CTTCCCTTTCCCCTTCCC
1 CTTCCCTTTCCCCTTCCC
9373553 GTTGGGTTGC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.00, C:0.61, G:0.00, T:0.39
Consensus pattern (18 bp):
CTTCCCTTTCCCCTTCCC
Found at i:9373643 original size:25 final size:25
Alignment explanation
Indices: 9373615--9373664 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
9373605 CAGGTAAGGC
*
9373615 TCCTTCTCCTTCTTCCGTTTTTCAT
1 TCCTTCTCCTTCTTCCGTTCTTCAT
* *
9373640 TCCTTTTTCTTCTTCCGTTCTTCAT
1 TCCTTCTCCTTCTTCCGTTCTTCAT
9373665 CTTCTCTTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.04, C:0.34, G:0.04, T:0.58
Consensus pattern (25 bp):
TCCTTCTCCTTCTTCCGTTCTTCAT
Found at i:9376580 original size:21 final size:21
Alignment explanation
Indices: 9376554--9376608 Score: 76
Period size: 21 Copynumber: 2.6 Consensus size: 21
9376544 ACCGCTGTTT
*
9376554 CTAATCTCACTGCTACAGTATC
1 CTAATCTCACCGCTACAGTA-C
*
9376576 C-AATCTCACCGCTATAGTAC
1 CTAATCTCACCGCTACAGTAC
9376596 CTAATCTCACCGC
1 CTAATCTCACCGC
9376609 CACCACTGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
20 2 0.07
21 27 0.90
22 1 0.03
ACGTcount: A:0.27, C:0.36, G:0.09, T:0.27
Consensus pattern (21 bp):
CTAATCTCACCGCTACAGTAC
Found at i:9376867 original size:8 final size:8
Alignment explanation
Indices: 9376854--9376880 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
9376844 ATTTTGCAGT
9376854 AAAAAATA
1 AAAAAATA
9376862 AAAAAATA
1 AAAAAATA
9376870 AAAAAATA
1 AAAAAATA
9376878 AAA
1 AAA
9376881 CAAAATTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (8 bp):
AAAAAATA
Found at i:9377949 original size:18 final size:19
Alignment explanation
Indices: 9377926--9377962 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
9377916 TTAGTGGCGT
9377926 TTCTTTT-TATTTTTTGAC
1 TTCTTTTATATTTTTTGAC
9377944 TTCTTTTACTATTTTTTGA
1 TTCTTTTA-TATTTTTTGA
9377963 ATACTGAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
20 10 0.59
ACGTcount: A:0.14, C:0.11, G:0.05, T:0.70
Consensus pattern (19 bp):
TTCTTTTATATTTTTTGAC
Found at i:9388229 original size:29 final size:29
Alignment explanation
Indices: 9388195--9388269 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
9388185 TTATTGATTA
*
9388195 CCACAAAGGTATTCCTTATCAGAGATTTG
1 CCACAAAGGCATTCCTTATCAGAGATTTG
* * *
9388224 CCACAAAGCCATTCCTTATTAGAGATTTT
1 CCACAAAGGCATTCCTTATCAGAGATTTG
* *
9388253 CTATAAAGGCATTCCTT
1 CCACAAAGGCATTCCTT
9388270 TAACAGAAAC
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.31, C:0.23, G:0.13, T:0.33
Consensus pattern (29 bp):
CCACAAAGGCATTCCTTATCAGAGATTTG
Found at i:9390571 original size:61 final size:58
Alignment explanation
Indices: 9390447--9390573 Score: 148
Period size: 61 Copynumber: 2.1 Consensus size: 58
9390437 TTAATATTAG
* * * * *
9390447 ATTAATATAATACTTATCAAGATAAATATTAGATTAATTTTAATATTAAATATATTGA
1 ATTAATATAATACTTATCAAGATAAATATTAAATGAAATTTAATATTAAATATAATCA
*
9390505 ATTAATATAATACTTATCTACAAGATAAATATTAAATGAAATTTAATATTAAGT-TAATCA
1 ATTAATATAATACTTA--T-CAAGATAAATATTAAATGAAATTTAATATTAAATATAATCA
*
9390565 GTTTAATAT
1 -ATTAATAT
9390574 TAAATTAATA
Statistics
Matches: 58, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
58 16 0.28
60 5 0.09
61 37 0.64
ACGTcount: A:0.48, C:0.05, G:0.06, T:0.42
Consensus pattern (58 bp):
ATTAATATAATACTTATCAAGATAAATATTAAATGAAATTTAATATTAAATATAATCA
Found at i:9390613 original size:17 final size:17
Alignment explanation
Indices: 9390532--9390625 Score: 61
Period size: 17 Copynumber: 5.5 Consensus size: 17
9390522 CTACAAGATA
* *
9390532 AATATTAAATGAAATTT
1 AATATTAAATTAAATTG
* *
9390549 AATATTAAGTTAATCAGTTT
1 AATATTAAATTAA--A-TTG
**
9390569 AATATTAAATT-AATAA
1 AATATTAAATTAAATTG
*
9390585 AATACT--ATTAAATT-
1 AATATTAAATTAAATTG
9390599 AAGTATTAAATTAAATTG
1 AA-TATTAAATTAAATTG
9390617 AATATTAAA
1 AATATTAAA
9390626 ACTATTAAAA
Statistics
Matches: 61, Mismatches: 8, Indels: 16
0.72 0.09 0.19
Matches are distributed among these distances:
14 5 0.08
15 6 0.10
16 6 0.10
17 27 0.44
18 2 0.03
19 2 0.03
20 13 0.21
ACGTcount: A:0.52, C:0.02, G:0.05, T:0.40
Consensus pattern (17 bp):
AATATTAAATTAAATTG
Found at i:9393929 original size:68 final size:68
Alignment explanation
Indices: 9393798--9393963 Score: 185
Period size: 68 Copynumber: 2.4 Consensus size: 68
9393788 TAGGATAGTT
* * *
9393798 AACATGGGATCATAGTGTGTAAGACCATAGCTAGGCTATGGAAACAAATGGAGTTCACTAGGACA
1 AACATGGGTTCATAATGTGTAAGACCATAGCTAGGCTATGGAAACAAATAGAGTTCACTAGGACA
9393863 CTA
66 CTA
* * *
9393866 AACATGGGTTAATAATGTGTAAGACCATAGCTAGGCTGT-GAGAACATATAGAGTCTGC-C-AGG
1 AACATGGGTTCATAATGTGTAAGACCATAGCTAGGCTATGGA-AACAAATAGAGT-T-CACTAGG
*
9393928 ACATTA
63 ACACTA
* * * *
9393934 AACATTGGTTCGTACTGTGTAAAACCATAG
1 AACATGGGTTCATAATGTGTAAGACCATAG
9393964 TTGAGCTATG
Statistics
Matches: 83, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
67 2 0.02
68 78 0.94
69 2 0.02
70 1 0.01
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.25
Consensus pattern (68 bp):
AACATGGGTTCATAATGTGTAAGACCATAGCTAGGCTATGGAAACAAATAGAGTTCACTAGGACA
CTA
Found at i:9398433 original size:17 final size:17
Alignment explanation
Indices: 9398381--9398435 Score: 55
Period size: 17 Copynumber: 3.5 Consensus size: 17
9398371 ATTAATGAAT
9398381 ATAAAAATAAACAAA-G
1 ATAAAAATAAACAAATG
* *
9398397 ---AAAATAAATAAATA
1 ATAAAAATAAACAAATG
*
9398411 AGAAAAATAAACAAATG
1 ATAAAAATAAACAAATG
9398428 ATAAAAAT
1 ATAAAAAT
9398436 CAATAAACTA
Statistics
Matches: 30, Mismatches: 5, Indels: 7
0.71 0.12 0.17
Matches are distributed among these distances:
13 11 0.37
17 19 0.63
ACGTcount: A:0.75, C:0.04, G:0.05, T:0.16
Consensus pattern (17 bp):
ATAAAAATAAACAAATG
Found at i:9406262 original size:21 final size:21
Alignment explanation
Indices: 9406236--9406278 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
9406226 TTGTATGTCT
9406236 GCTTCAATGGTTAGTGTTTTG
1 GCTTCAATGGTTAGTGTTTTG
*
9406257 GCTTCAGTGGTTAGTGTTTTG
1 GCTTCAATGGTTAGTGTTTTG
9406278 G
1 G
9406279 GAAGTGTTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.12, C:0.09, G:0.33, T:0.47
Consensus pattern (21 bp):
GCTTCAATGGTTAGTGTTTTG
Found at i:9408861 original size:22 final size:22
Alignment explanation
Indices: 9408833--9408876 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
9408823 TTGGAAAACG
*
9408833 TAGATGTAAAGACTGCATTCCT
1 TAGATGTAAAGACTCCATTCCT
9408855 TAGATGTAAAGACTCCATTCCT
1 TAGATGTAAAGACTCCATTCCT
9408877 GCACGAGGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (22 bp):
TAGATGTAAAGACTCCATTCCT
Found at i:9411029 original size:9 final size:10
Alignment explanation
Indices: 9411003--9411028 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
9410993 TTCTTTATAT
9411003 ATTTTTTAGA
1 ATTTTTTAGA
9411013 ATTTTTTAGA
1 ATTTTTTAGA
9411023 ATTTTT
1 ATTTTT
9411029 ATAGTTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.27, C:0.00, G:0.08, T:0.65
Consensus pattern (10 bp):
ATTTTTTAGA
Found at i:9411080 original size:19 final size:19
Alignment explanation
Indices: 9411044--9411099 Score: 64
Period size: 19 Copynumber: 3.0 Consensus size: 19
9411034 TTTTTTAAAA
9411044 AATAA-ATTTTGAAATTTTT
1 AATAATATTTTG-AATTTTT
9411063 -ATAAATATTTTGAATTTTT
1 AAT-AATATTTTGAATTTTT
*
9411082 AATATTATTTT-AATTTTT
1 AATAATATTTTGAATTTTT
9411100 TGTAATTTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
18 9 0.27
19 16 0.48
20 8 0.24
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.59
Consensus pattern (19 bp):
AATAATATTTTGAATTTTT
Found at i:9411213 original size:18 final size:18
Alignment explanation
Indices: 9411179--9411213 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
9411169 ACAATTTGCT
*
9411179 ATTTGAATTATTTAAATG
1 ATTTGAATTATTAAAATG
*
9411197 ATTTGAATTGTTAAAAT
1 ATTTGAATTATTAAAAT
9411214 TTAACTCGAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.11, T:0.49
Consensus pattern (18 bp):
ATTTGAATTATTAAAATG
Found at i:9415293 original size:45 final size:45
Alignment explanation
Indices: 9415229--9415316 Score: 149
Period size: 45 Copynumber: 2.0 Consensus size: 45
9415219 ATAGATACTC
* * *
9415229 GGTGGATTCATCACATAGCAACCACCTTATTAATCAATGATGTAT
1 GGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTAT
9415274 GGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGT
1 GGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGT
9415317 TCGATTCACA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (45 bp):
GGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTAT
Found at i:9415392 original size:51 final size:50
Alignment explanation
Indices: 9415327--9415513 Score: 198
Period size: 51 Copynumber: 3.7 Consensus size: 50
9415317 TCGATTCACA
* * * *
9415327 TAGTAGTCTGCACATAGTACTACACATGTGACCATTACCATCCGATAGACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCA-TACCATCTGGTAGACG
* * * * *
9415378 TAGTAGCCTACACATAGTACTACACACGTGATCGAAACTATCTGGTACG-CA
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCATACCATCTGGTA-GACG
* * * * *
9415429 TAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTTTGGTACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATACCA-TCTGGTAGACG
9415479 TAGTAGCCTGCACATAGTACTACACACGTGACCAT
1 TAGTAGCCTGCACATAGTACTACACACGTGACCAT
9415514 CACTTTCACT
Statistics
Matches: 110, Mismatches: 21, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
49 2 0.02
50 39 0.35
51 66 0.60
52 3 0.03
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATACCATCTGGTAGACG
Found at i:9415505 original size:101 final size:101
Alignment explanation
Indices: 9415325--9415509 Score: 273
Period size: 101 Copynumber: 1.8 Consensus size: 101
9415315 GTTCGATTCA
* * *
9415325 CATAGTAGTCTGCACATAGTACTACACATGTGACCATTACCATCCGATAGACGTAGTAGCCTACA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCA-TACCATCCGATACACGTAGTAGCCTACA
9415390 CATAGTACTACACACGTGATCGAAACTATCTGGTACG
65 CATAGTACTACACACGTGATCGAAACTATCTGGTACG
* ** * *
9415427 CATAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTTTGGTACACGTAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCATACCA-TCCGATACACGTAGTAGCCTACA
9415491 CATAGTACTACACACGTGA
65 CATAGTACTACACACGTGA
9415510 CCATCACTTT
Statistics
Matches: 74, Mismatches: 8, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
100 4 0.05
101 37 0.50
102 33 0.45
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (101 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACCATACCATCCGATACACGTAGTAGCCTACAC
ATAGTACTACACACGTGATCGAAACTATCTGGTACG
Found at i:9418564 original size:10 final size:9
Alignment explanation
Indices: 9418542--9418566 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
9418532 TGTTAAAAGT
9418542 AAAAATAGG
1 AAAAATAGG
9418551 AAAAATAGG
1 AAAAATAGG
9418560 AAAAATA
1 AAAAATA
9418567 TTATATGTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.72, C:0.00, G:0.16, T:0.12
Consensus pattern (9 bp):
AAAAATAGG
Found at i:9418583 original size:10 final size:10
Alignment explanation
Indices: 9418570--9418596 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
9418560 AAAAATATTA
9418570 TATGTTATAT
1 TATGTTATAT
9418580 TATGTTATAT
1 TATGTTATAT
9418590 TATGTTA
1 TATGTTA
9418597 AATGTTTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59
Consensus pattern (10 bp):
TATGTTATAT
Found at i:9419760 original size:6 final size:6
Alignment explanation
Indices: 9419749--9419773 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
9419739 GCAATTGGTA
9419749 ATGTAT ATGTAT ATGTAT ATGTAT A
1 ATGTAT ATGTAT ATGTAT ATGTAT A
9419774 AACTCATTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (6 bp):
ATGTAT
Found at i:9431648 original size:33 final size:32
Alignment explanation
Indices: 9431611--9431683 Score: 85
Period size: 32 Copynumber: 2.2 Consensus size: 32
9431601 AAAGCCAAAT
*
9431611 CCAAAACAAAACAGTTGGCCCAGAATACA-TGGC
1 CCAAAACAAAACAG-AGGCCC-GAATACAGTGGC
* * *
9431644 CCAAAATAAAATAGAGGCCCGAATCCAGTGGC
1 CCAAAACAAAACAGAGGCCCGAATACAGTGGC
9431676 CCAAAACA
1 CCAAAACA
9431684 GTTGCAAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
31 6 0.18
32 16 0.47
33 12 0.35
ACGTcount: A:0.44, C:0.27, G:0.18, T:0.11
Consensus pattern (32 bp):
CCAAAACAAAACAGAGGCCCGAATACAGTGGC
Found at i:9432380 original size:22 final size:21
Alignment explanation
Indices: 9432338--9432380 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
9432328 TGGGGGGAGA
**
9432338 GTTTTTTTTAAAATTTTTTTG
1 GTTTTTTTTAAAATTGCTTTG
*
9432359 GTTTTTTTTTAAATTGGCTTTG
1 GTTTTTTTTAAAATT-GCTTTG
9432381 AAATGATTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.16, C:0.02, G:0.14, T:0.67
Consensus pattern (21 bp):
GTTTTTTTTAAAATTGCTTTG
Found at i:9445438 original size:84 final size:84
Alignment explanation
Indices: 9445289--9445657 Score: 388
Period size: 84 Copynumber: 4.3 Consensus size: 84
9445279 ACCATAATCC
* * * * * *
9445289 TATCTCCTTGAAGTTGCAGTGGAGCGGATTAAAGTAATAGGTCTTATCTCTCTGAAGATGCAGAG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTGATAGATCTTATCTCTCTAAAGTTGCAGAG
*
9445354 AGCAGACCGCATCTAGTCT
66 AGCAGATCGCATCTAGTCT
* *
9445373 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTGATAGATCTTATCTCTCTGAAGTTGTAGAG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTGATAGATCTTATCTCTCTAAAGTTGCAGAG
**
9445438 AGCAGATCATATC-AGGTCT
66 AGCAGATCGCATCTA-GTCT
* * ** * *
9445457 TATCTCCCTGAAGTTACAGTGGAGCAGACCT-AAGATG-GCGAATCTTACCTCCCTAAAGTTGCA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA-TTAAAG-TGATAG-ATCTTATCTCTCTAAAGTTGCA
* * * *
9445520 -ATGGAGCAGATTAAAGCCA-ATAATCC
63 GA--GAGCAGA-T--CG-CATCTAGTCT
* * *
9445546 TATCTCCCTGAGGTTACAGTGGAGCGGATTAAAGTGATAGATCTTATCTCTCTAAAGTTGCAGAG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTGATAGATCTTATCTCTCTAAAGTTGCAGAG
*
9445611 AGCAGATCGTATCTAGTCT
66 AGCAGATCGCATCTAGTCT
9445630 TATCTCCCTGAAGTTGCAGTGGAGCAGA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA
9445658 CCCGAATAAG
Statistics
Matches: 232, Mismatches: 38, Indels: 30
0.77 0.13 0.10
Matches are distributed among these distances:
83 2 0.01
84 135 0.58
85 21 0.09
86 8 0.03
87 8 0.03
88 23 0.10
89 33 0.14
90 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.28
Consensus pattern (84 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTGATAGATCTTATCTCTCTAAAGTTGCAGAG
AGCAGATCGCATCTAGTCT
Found at i:9445468 original size:40 final size:40
Alignment explanation
Indices: 9445327--9445471 Score: 132
Period size: 40 Copynumber: 3.5 Consensus size: 40
9445317 TTAAAGTAAT
* * * **
9445327 AGGTCTTATCTCTCTGAAGATGCAGAGAGCAGACCGCATC
1 AGGTCTTATCTCCCTGAAGTTGCAGAGAGCAGATCATATC
* *
9445367 TA-GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTGAT-
1 -AGGTCTTATCTCCCTGAAGTTGCAG-AGAGCAGA-T-CA-T-ATC
* * *
9445411 AGATCTTATCTCTCTGAAGTTGTAGAGAGCAGATCATATC
1 AGGTCTTATCTCCCTGAAGTTGCAGAGAGCAGATCATATC
9445451 AGGTCTTATCTCCCTGAAGTT
1 AGGTCTTATCTCCCTGAAGTT
9445472 ACAGTGGAGC
Statistics
Matches: 83, Mismatches: 14, Indels: 15
0.74 0.12 0.13
Matches are distributed among these distances:
39 2 0.02
40 41 0.49
41 9 0.11
42 1 0.01
43 8 0.10
44 20 0.24
45 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (40 bp):
AGGTCTTATCTCCCTGAAGTTGCAGAGAGCAGATCATATC
Found at i:9445676 original size:45 final size:44
Alignment explanation
Indices: 9445587--9445742 Score: 149
Period size: 44 Copynumber: 3.6 Consensus size: 44
9445577 AAGTGATAGA
* * * * *
9445587 TCTTATCTCTCTAAAGTTGCAG-AGAGCAGATCG--T-ATCTAG
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGACCGAATAAACAAG
* *
9445627 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCCGAATAAGCAAG
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGA-CCGAATAAACAAG
* * * * *
9445672 TCTTATCCCCCTAAAATTGCAGTGGGGCAGACTGAATAAACAAA
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGACCGAATAAACAAG
* *
9445716 TCCTATCTCCCTAAAGTTGTAGTGGAG
1 TCTTATCTCCCTAAAGTTGCAGTGGAG
9445743 TGGATTAGAA
Statistics
Matches: 93, Mismatches: 18, Indels: 6
0.79 0.15 0.05
Matches are distributed among these distances:
40 20 0.22
41 7 0.08
42 2 0.02
44 33 0.35
45 31 0.33
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.27
Consensus pattern (44 bp):
TCTTATCTCCCTAAAGTTGCAGTGGAGCAGACCGAATAAACAAG
Found at i:9445686 original size:173 final size:173
Alignment explanation
Indices: 9445373--9445798 Score: 510
Period size: 173 Copynumber: 2.5 Consensus size: 173
9445363 CATCTAGTCT
* * *
9445373 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTGATAGATCTTATCTCTCTGAAGTTGTAGAG
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAGTGATAGATCTTATCTCTCTAAAGTTGCAGAG
* * *
9445438 AGCAGATCATATCAGGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACCTAAGATGGCGAATCTT
66 AGCAGATCGTATCAGGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACCGAAGATAGCGAATCTT
* * **
9445503 ACCTCCCTAAAGTTGCAATGGAGCAGA-TTAA-AGCCAATAATCC
131 ACCTCCCTAAAATTGCAATGGAGCAGACTGAATAAAC-A-AATCC
* *
9445546 TATCTCCCTGAGGTTACAGTGGAGCGGATTAAAGTGATAGATCTTATCTCTCTAAAGTTGCAGAG
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAGTGATAGATCTTATCTCTCTAAAGTTGCAGAG
* *
9445611 AGCAGATCGTATCTA-GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCCGAATA-AGC-AAGT
66 AGCAGATCGTATC-AGGTCTTATCTCCCTGAAGTTACAGTGGAGCAGA-CCGAAGATAGCGAA-T
* *
9445673 CTTATCC-CCCTAAAATTGCAGTGGGGCAGACTGAATAAACAAATCC
128 CTTA-CCTCCCTAAAATTGCAATGGAGCAGACTGAATAAACAAATCC
* * * *
9445719 TATCTCCCTAAAGTTGTAGTGGAGTGGATTAGAA-TGAT-GAATCTTATCTCTCTGAAA-TTACA
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTA-AAGTGATAG-ATCTTATCTCTCT-AAAGTTGCA
*
9445781 GTAGAGCAGATCGCATCA
63 G-AGAGCAGATCGTATCA
9445799 AATTTATCTT
Statistics
Matches: 220, Mismatches: 23, Indels: 20
0.84 0.09 0.08
Matches are distributed among these distances:
172 3 0.01
173 184 0.84
174 31 0.14
175 2 0.01
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (173 bp):
TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAGTGATAGATCTTATCTCTCTAAAGTTGCAGAG
AGCAGATCGTATCAGGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACCGAAGATAGCGAATCTT
ACCTCCCTAAAATTGCAATGGAGCAGACTGAATAAACAAATCC
Found at i:9453112 original size:16 final size:15
Alignment explanation
Indices: 9453085--9453118 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
9453075 ATAACTAGTA
*
9453085 TATAATTATATTTAT
1 TATAATTATATTAAT
9453100 TATAATATATATTAAT
1 TATAAT-TATATTAAT
9453116 TAT
1 TAT
9453119 TATCAACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TATAATTATATTAAT
Found at i:9453660 original size:25 final size:26
Alignment explanation
Indices: 9453618--9453671 Score: 76
Period size: 25 Copynumber: 2.1 Consensus size: 26
9453608 TTCTCTCAAA
*
9453618 TTTCAATTTTATTTAATTATTTAAT-T
1 TTTCAATTTTATTAAATTA-TTAATAT
9453644 TTTCAA-TTTATTAAATTATTAATAT
1 TTTCAATTTTATTAAATTATTAATAT
9453669 TTT
1 TTT
9453672 ATACGAATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 5 0.19
25 15 0.58
26 6 0.23
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (26 bp):
TTTCAATTTTATTAAATTATTAATAT
Found at i:9455723 original size:32 final size:32
Alignment explanation
Indices: 9455682--9455745 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
9455672 ATTCAAACCC
*
9455682 TTGCAATATTTAGGCATCACTTTTCTCTTAAT
1 TTGCAATATTTAGCCATCACTTTTCTCTTAAT
9455714 TTGCAATATTTAGCCATCACTTTTCTCTTAAT
1 TTGCAATATTTAGCCATCACTTTTCTCTTAAT
9455746 CATCTGTAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.25, C:0.20, G:0.08, T:0.47
Consensus pattern (32 bp):
TTGCAATATTTAGCCATCACTTTTCTCTTAAT
Found at i:9468287 original size:15 final size:15
Alignment explanation
Indices: 9468269--9468301 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
9468259 CAAATGCTAT
9468269 AATAATAAATACAAC
1 AATAATAAATACAAC
*
9468284 AATAATAAATACATC
1 AATAATAAATACAAC
9468299 AAT
1 AAT
9468302 GACATAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (15 bp):
AATAATAAATACAAC
Found at i:9470132 original size:44 final size:45
Alignment explanation
Indices: 9470026--9470147 Score: 171
Period size: 45 Copynumber: 2.7 Consensus size: 45
9470016 TTGGTTTTAA
* *
9470026 TCTGTTCCACTGCAACTTCAGGGAGATAAGATTTGTTATCTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTATCTTCAG
9470071 TCTGC-CTCACTGCAACTTCA-GGAGGATAAGACTTGCTTA-CTT-AG
1 TCTGCTC-CACTGCAACTTCAGGGA-GATAAGACTTG-TTATCTTCAG
9470115 TCTGCTCCACTGCAACTTCAGGGAGATAAGACT
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACT
9470148 AAATGCGATC
Statistics
Matches: 70, Mismatches: 2, Indels: 11
0.84 0.02 0.13
Matches are distributed among these distances:
44 33 0.47
45 34 0.49
46 3 0.04
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.30
Consensus pattern (45 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTATCTTCAG
Found at i:9481965 original size:15 final size:15
Alignment explanation
Indices: 9481947--9481979 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
9481937 CAAATGCTAT
9481947 AATAATAAATACAAC
1 AATAATAAATACAAC
*
9481962 AATAATAAATACATC
1 AATAATAAATACAAC
9481977 AAT
1 AAT
9481980 GACATAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (15 bp):
AATAATAAATACAAC
Found at i:9482284 original size:28 final size:28
Alignment explanation
Indices: 9482249--9482304 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
9482239 TAATTATACG
9482249 TACATATAAAAGGAATATTTATAGATAA
1 TACATATAAAAGGAATATTTATAGATAA
9482277 TACATATAAAAGGAATATTTATAGATAA
1 TACATATAAAAGGAATATTTATAGATAA
9482305 AAAATTAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.54, C:0.04, G:0.11, T:0.32
Consensus pattern (28 bp):
TACATATAAAAGGAATATTTATAGATAA
Found at i:9487070 original size:31 final size:31
Alignment explanation
Indices: 9487035--9487097 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
9487025 TTTGCATTCT
9487035 AATCTCTATTTAATTAAGCTCAATTCAGGCA
1 AATCTCTATTTAATTAAGCTCAATTCAGGCA
9487066 AATCTCTATTTAATTAAGCTCAATTCAGGCA
1 AATCTCTATTTAATTAAGCTCAATTCAGGCA
9487097 A
1 A
9487098 TCTTCCATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.37, C:0.19, G:0.10, T:0.35
Consensus pattern (31 bp):
AATCTCTATTTAATTAAGCTCAATTCAGGCA
Found at i:9488523 original size:445 final size:445
Alignment explanation
Indices: 9487694--9489040 Score: 2676
Period size: 445 Copynumber: 3.0 Consensus size: 445
9487684 GTTTTAAAAA
9487694 ATTTTCAGTTAACCCGTTCTTTTAGCACAACCACAATTAAAGTCGACCACCAGTAAAAAGCCTCA
1 ATTTTCAGTTAACCCGTTCTTTTAGCACAACCACAATTAAAGTCGACCACCAGTAAAAAGCCTCA
*
9487759 TATTTTAACAGGGACATGGAACATCTCAAAAAATCTTCCAGGGAACATAACCCACCTTACCATAA
66 TCTTTTAACAGGGACATGGAACATCTCAAAAAATCTTCCAGGGAACATAACCCACCTTACCATAA
9487824 AAGTCTAACTAGTATTTGGCATTGGCTAGATCATCACCCACCTTACCATAAAAGTCTTCAACTCC
131 AAGTCTAACTAGTATTTGGCATTGGCTAGATCATCACCCACCTTACCATAAAAGTCTTCAACTCC
9487889 GCATTTTTGAACATTATCAATAGAAATCCGATGAATATTTCTTTGTTTAGGGCTTTGAGGACAAG
196 GCATTTTTGAACATTATCAATAGAAATCCGATGAATATTTCTTTGTTTAGGGCTTTGAGGACAAG
9487954 GAGTTAGAGATTTTTGAGTTGTGGAAATGGCTCTCATATATGCAAAAAACATGTCATACATCATA
261 GAGTTAGAGATTTTTGAGTTGTGGAAATGGCTCTCATATATGCAAAAAACATGTCATACATCATA
9488019 CGGGAAAAGGCACTATTAGCCTCTGATAACTCTTGAAATGAGTTATAATTCATACTTTTAGACTT
326 CGGGAAAAGGCACTATTAGCCTCTGATAACTCTTGAAATGAGTTATAATTCATACTTTTAGACTT
9488084 AGTTAATTGCTTTTACTTAAGTAAAATTAGTTTCATTTTAGGTAATTGCATGATT
391 AGTTAATTGCTTTTACTTAAGTAAAATTAGTTTCATTTTAGGTAATTGCATGATT
9488139 ATTTTCAGTTAACCCGTTCTTTTAGCACAACCACAATTAAAGTCGACCACCAGTAAAAAGCCTCA
1 ATTTTCAGTTAACCCGTTCTTTTAGCACAACCACAATTAAAGTCGACCACCAGTAAAAAGCCTCA
9488204 TCTTTTAACAGGGACATGGAACATCTCAAAAAATCTTCCAGGGAACATAACCCACCTTACCATAA
66 TCTTTTAACAGGGACATGGAACATCTCAAAAAATCTTCCAGGGAACATAACCCACCTTACCATAA
9488269 AAGTCTAACTAGTATTTGGCATTGGCTAGATCATCACCCACCTTACCATAAAAGTCTTCAACTCC
131 AAGTCTAACTAGTATTTGGCATTGGCTAGATCATCACCCACCTTACCATAAAAGTCTTCAACTCC
9488334 GCATTTTTGAACATTATCAATAGAAATCCGATGAATATTTCTTTGTTTAGGGCTTTGAGGACAAG
196 GCATTTTTGAACATTATCAATAGAAATCCGATGAATATTTCTTTGTTTAGGGCTTTGAGGACAAG
9488399 GAGTTAGAGATTTTTGAGTTGTGGAAATGGCTCTCATATATGCAAAAAACATGTCATACATCATA
261 GAGTTAGAGATTTTTGAGTTGTGGAAATGGCTCTCATATATGCAAAAAACATGTCATACATCATA
9488464 CGGGAAAAGGCACTATTAGCCTCTGATAACTCTTGAAATGAGTTATAATTCATACTTTTAGACTT
326 CGGGAAAAGGCACTATTAGCCTCTGATAACTCTTGAAATGAGTTATAATTCATACTTTTAGACTT
9488529 AGTTAATTGCTTTTACTTAAGTAAAATTAGTTTCATTTTAGGTAATTGCATGATT
391 AGTTAATTGCTTTTACTTAAGTAAAATTAGTTTCATTTTAGGTAATTGCATGATT
9488584 ATTTTCAGTTAACCCGTTCTTTTAGCACAACCACAATTAAAGTCGACCACCAGTAAAAAGCCTCA
1 ATTTTCAGTTAACCCGTTCTTTTAGCACAACCACAATTAAAGTCGACCACCAGTAAAAAGCCTCA
9488649 TCTTTTAACAGGGACATGGAACATCTCAAAAAATCTTCCAGGGAACATAACCCACCTTACCATAA
66 TCTTTTAACAGGGACATGGAACATCTCAAAAAATCTTCCAGGGAACATAACCCACCTTACCATAA
9488714 AAGTCTAACTAGTATTTGGCATTGGCTAGATCATCACCCACCTTACCATAAAAGTCTTCAACTCC
131 AAGTCTAACTAGTATTTGGCATTGGCTAGATCATCACCCACCTTACCATAAAAGTCTTCAACTCC
9488779 GCATTTTTGAACATTATCAATAGAAATCCGATGAATATTTCTTTGTTTAGGGCTTTGAGGACAAG
196 GCATTTTTGAACATTATCAATAGAAATCCGATGAATATTTCTTTGTTTAGGGCTTTGAGGACAAG
9488844 GAGTTAGAGATTTTTGAGTTGTGGAAATGGCTCTCATATATGCAAAAAACATGTCATACATCATA
261 GAGTTAGAGATTTTTGAGTTGTGGAAATGGCTCTCATATATGCAAAAAACATGTCATACATCATA
9488909 CGGGAAAAGGCACTATTAGCCTCTGATAACTCTTGAAATGAGTTATAATTCATACTTTTAGACTT
326 CGGGAAAAGGCACTATTAGCCTCTGATAACTCTTGAAATGAGTTATAATTCATACTTTTAGACTT
9488974 AGTTAATTGCTTTTACTTAAGTAAAATTAGTTTCATTTTAGGTAATTGCATGATT
391 AGTTAATTGCTTTTACTTAAGTAAAATTAGTTTCATTTTAGGTAATTGCATGATT
*
9489029 ATTTTTAGTTAA
1 ATTTTCAGTTAA
9489041 TCGAGCATTG
Statistics
Matches: 900, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
445 900 1.00
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.33
Consensus pattern (445 bp):
ATTTTCAGTTAACCCGTTCTTTTAGCACAACCACAATTAAAGTCGACCACCAGTAAAAAGCCTCA
TCTTTTAACAGGGACATGGAACATCTCAAAAAATCTTCCAGGGAACATAACCCACCTTACCATAA
AAGTCTAACTAGTATTTGGCATTGGCTAGATCATCACCCACCTTACCATAAAAGTCTTCAACTCC
GCATTTTTGAACATTATCAATAGAAATCCGATGAATATTTCTTTGTTTAGGGCTTTGAGGACAAG
GAGTTAGAGATTTTTGAGTTGTGGAAATGGCTCTCATATATGCAAAAAACATGTCATACATCATA
CGGGAAAAGGCACTATTAGCCTCTGATAACTCTTGAAATGAGTTATAATTCATACTTTTAGACTT
AGTTAATTGCTTTTACTTAAGTAAAATTAGTTTCATTTTAGGTAATTGCATGATT
Found at i:9491120 original size:16 final size:16
Alignment explanation
Indices: 9491099--9491130 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
9491089 GTTTTGTTGC
*
9491099 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
9491115 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
9491131 CTTTCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:9492644 original size:47 final size:47
Alignment explanation
Indices: 9492593--9492692 Score: 112
Period size: 47 Copynumber: 2.1 Consensus size: 47
9492583 TGGTTGGACC
* ** *
9492593 ATGGCAACA-TGTTATATGTGATTTTCGTATAAGACCATATCTAGGTT
1 ATGGCAACAGTGTGATATGTGATACT-GTATAAGACCATAGCTAGGTT
* * * *
9492640 ATGGCATCAGTGTGATATGTGCTACTGTGTAAGACCATAGCTGGGTT
1 ATGGCAACAGTGTGATATGTGATACTGTATAAGACCATAGCTAGGTT
9492687 ATGGCA
1 ATGGCA
9492693 TCAATATGTA
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
47 32 0.73
48 12 0.27
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (47 bp):
ATGGCAACAGTGTGATATGTGATACTGTATAAGACCATAGCTAGGTT
Found at i:9510659 original size:43 final size:42
Alignment explanation
Indices: 9510564--9510686 Score: 153
Period size: 42 Copynumber: 3.0 Consensus size: 42
9510554 CATAAAACTG
* * *
9510564 ACAAAATGCCATAGAGGCCATATCAGAATACCACAAAGGTTA
1 ACAAAATGCCACAAAGGCCATATCAGAATACCACAAAGGCTA
* *
9510606 GCAAAATGCCACAAAGGCCATATTAGAATA-CACCTAAAGGCTA
1 ACAAAATGCCACAAAGGCCATATCAGAATACCA-C-AAAGGCTA
*
9510649 ACAAAATGCCACAAAGGCCA-A-CAGAATGCCACAAAGGC
1 ACAAAATGCCACAAAGGCCATATCAGAATACCACAAAGGC
9510687 CATATTAAAA
Statistics
Matches: 70, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
40 6 0.09
41 8 0.11
42 30 0.43
43 26 0.37
ACGTcount: A:0.46, C:0.24, G:0.17, T:0.13
Consensus pattern (42 bp):
ACAAAATGCCACAAAGGCCATATCAGAATACCACAAAGGCTA
Found at i:9510666 original size:20 final size:20
Alignment explanation
Indices: 9510564--9510688 Score: 81
Period size: 20 Copynumber: 6.0 Consensus size: 20
9510554 CATAAAACTG
* *
9510564 ACAAAATGCCATAGAGGCCA
1 ACAAAATGCCACAAAGGCCA
* * **
9510584 TATCAGAATACCACAAAGGTTA
1 -A-CAAAATGCCACAAAGGCCA
*
9510606 GCAAAATGCCACAAAGGCCA
1 ACAAAATGCCACAAAGGCCA
* * * *
9510626 TATTAGAAT-ACACCTAAAGGCTA
1 -A-CAAAATGCCA-C-AAAGGCCA
9510649 ACAAAATGCCACAAAGGCCA
1 ACAAAATGCCACAAAGGCCA
*
9510669 ACAGAATGCCACAAAGGCCA
1 ACAAAATGCCACAAAGGCCA
9510689 TATTAAAATA
Statistics
Matches: 77, Mismatches: 21, Indels: 13
0.69 0.19 0.12
Matches are distributed among these distances:
20 41 0.53
21 8 0.10
22 21 0.27
23 7 0.09
ACGTcount: A:0.46, C:0.25, G:0.17, T:0.13
Consensus pattern (20 bp):
ACAAAATGCCACAAAGGCCA
Found at i:9511842 original size:115 final size:115
Alignment explanation
Indices: 9511640--9512004 Score: 687
Period size: 115 Copynumber: 3.2 Consensus size: 115
9511630 ACGAGATACA
* *
9511640 TAAAAACTTTACTACTAATGGGTTTAATAATTTTGCTTAAAAACTTTACTC-GAATACATAAAGT
1 TAAAAAATTTACTACTAATGGGTTTAATAATTTTGCTTAAAAAATTTACTCAG-ATACATAAAGT
*
9511704 GGACGCTCTGACTTCACTCGAATCTCAAGTATCTTTGATATCCTTATTCCT
65 GGATGCTCTGACTTCACTCGAATCTCAAGTATCTTTGATATCCTTATTCCT
9511755 TAAAAAATTTACTACTAATGGGTTTAATAATTTTGCTTAAAAAATTTACTCAGATACATAAAGTG
1 TAAAAAATTTACTACTAATGGGTTTAATAATTTTGCTTAAAAAATTTACTCAGATACATAAAGTG
9511820 GATGCTCTGACTTCACTCGAATCTCAAGTATCTTTGATATCCTTATTCCT
66 GATGCTCTGACTTCACTCGAATCTCAAGTATCTTTGATATCCTTATTCCT
9511870 TAAAAAATTTACTACTAATGGGTTTAATAATTTTGCTTAAAAAATTTACTCAGATACATAAAGTG
1 TAAAAAATTTACTACTAATGGGTTTAATAATTTTGCTTAAAAAATTTACTCAGATACATAAAGTG
9511935 GATGCTCTGACTTCACTCGAATCTCAAGTATCTTTGATATCCTTATTCCT
66 GATGCTCTGACTTCACTCGAATCTCAAGTATCTTTGATATCCTTATTCCT
9511985 TAAAAAATTTACTACTAATG
1 TAAAAAATTTACTACTAATG
9512005 TAGCATGTTT
Statistics
Matches: 246, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
115 245 1.00
116 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.38
Consensus pattern (115 bp):
TAAAAAATTTACTACTAATGGGTTTAATAATTTTGCTTAAAAAATTTACTCAGATACATAAAGTG
GATGCTCTGACTTCACTCGAATCTCAAGTATCTTTGATATCCTTATTCCT
Found at i:9516908 original size:21 final size:21
Alignment explanation
Indices: 9516876--9516916 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
9516866 TAATAACAAC
9516876 TAATAATAATTATATT-TTATA
1 TAATAATAATTA-ATTGTTATA
9516897 TAAT-ATATATTAATTGTTAT
1 TAATAATA-ATTAATTGTTAT
9516917 TAACCTTGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (21 bp):
TAATAATAATTAATTGTTATA
Found at i:9518292 original size:27 final size:27
Alignment explanation
Indices: 9518273--9518575 Score: 401
Period size: 27 Copynumber: 11.3 Consensus size: 27
9518263 GGGTATGACA
9518273 GTCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
9518300 ATCATTTTACCCTATGGGGGTATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCG
**
9518327 GTCATTTTACCCTATGGGGGTATTTTT
1 GTCATTTTACCCTATGGGGGTATTTCG
* **
9518354 GTCATTCTACCCTATAAGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
9518381 GTTATTTAACCCTATGGGAGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
9518408 GTCATTTTACCCTATGGGGTTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
9518435 ATCAATTTACCCTATGGAGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
9518462 GTCATTTTACCCTAT-GGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
9518488 ATCATTCTACCATATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
9518515 GTCATTCTACCTTATAGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
9518542 GTCATTTTACCCTATAGGGGTATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCG
9518569 GTCATTT
1 GTCATTT
9518576 ATCGACCTCT
Statistics
Matches: 239, Mismatches: 36, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
26 22 0.09
27 217 0.91
ACGTcount: A:0.19, C:0.18, G:0.21, T:0.41
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGGGTATTTCG
Found at i:9535183 original size:29 final size:29
Alignment explanation
Indices: 9535141--9535206 Score: 114
Period size: 29 Copynumber: 2.3 Consensus size: 29
9535131 ATATCGACTC
* *
9535141 AGACTAGACTTAAATTGGTATGTACCTCT
1 AGACTCGACTTAAATTGGCATGTACCTCT
9535170 AGACTCGACTTAAATTGGCATGTACCTCT
1 AGACTCGACTTAAATTGGCATGTACCTCT
9535199 AGACTCGA
1 AGACTCGA
9535207 TTCTAAGCTG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (29 bp):
AGACTCGACTTAAATTGGCATGTACCTCT
Found at i:9538532 original size:23 final size:23
Alignment explanation
Indices: 9538502--9538564 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
9538492 TTTTTTTCAA
*
9538502 AGAATATTTACTGTTCACGCCAG
1 AGAATATTTACTGTTCACACCAG
* *
9538525 AGAATATTTACTATTCACATCAG
1 AGAATATTTACTGTTCACACCAG
*
9538548 AGAATATTTATTGTTCA
1 AGAATATTTACTGTTCA
9538565 TTCGTCTTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.37
Consensus pattern (23 bp):
AGAATATTTACTGTTCACACCAG
Found at i:9543608 original size:28 final size:29
Alignment explanation
Indices: 9543551--9543608 Score: 66
Period size: 28 Copynumber: 2.0 Consensus size: 29
9543541 TCCGAGCCTT
**
9543551 GGGGAAAAATGTAATTATGTAAAAGTTTA
1 GGGGAAAAATGTAATTATGTAAAAAATTA
*
9543580 GGGG-AAAATCGTAATTTTG-AAAAAATTA
1 GGGGAAAAAT-GTAATTATGTAAAAAATTA
9543608 G
1 G
9543609 AGTCGAGGGC
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
28 13 0.52
29 12 0.48
ACGTcount: A:0.45, C:0.02, G:0.24, T:0.29
Consensus pattern (29 bp):
GGGGAAAAATGTAATTATGTAAAAAATTA
Found at i:9544055 original size:50 final size:51
Alignment explanation
Indices: 9543944--9544142 Score: 196
Period size: 50 Copynumber: 3.8 Consensus size: 51
9543934 ATTTGGTTAA
9543944 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCA-G-TGGCATCCTTGAGATCATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGG-ATGTTGGCA-CC--GAG---ATG
*
9544000 AGAGGTCCCATGTAAGACCATGTCTGGGACATGG-TGTTGGCACCGAGATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGATGTTGGCACCGAGATG
* * * * *
9544050 AGAGGTCGCC-CGTAAGACTATGTTTGGGACATGGCATG--GGCACCGATATG
1 AGAGATC-CCATGTAAGACCATGTCTGGGACATGG-ATGTTGGCACCGAGATG
*
9544100 AGAACATCCCATGTAAGACCATGTCTGGGACATGGAT-TTGGCA
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGATGTTGGCA
9544143 TGCTATGATC
Statistics
Matches: 124, Mismatches: 10, Indels: 23
0.79 0.06 0.15
Matches are distributed among these distances:
50 48 0.39
51 30 0.24
52 2 0.02
53 3 0.02
55 3 0.02
56 38 0.31
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.23
Consensus pattern (51 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGATGTTGGCACCGAGATG
Found at i:9562849 original size:23 final size:23
Alignment explanation
Indices: 9562814--9562908 Score: 127
Period size: 23 Copynumber: 4.1 Consensus size: 23
9562804 GATAAGATCA
* *
9562814 ATTCTGTGATGCCTTTTTGGCGT
1 ATTCTATGATGCCTTTGTGGCGT
* *
9562837 ATTCTATGCTGCCTTTGTGTCGT
1 ATTCTATGATGCCTTTGTGGCGT
** *
9562860 ATTCTGCGATGCCTTTGTGGTGT
1 ATTCTATGATGCCTTTGTGGCGT
9562883 ATTCTATGATGCCTTTGTGGCGT
1 ATTCTATGATGCCTTTGTGGCGT
9562906 ATT
1 ATT
9562909 TTGTAACGTC
Statistics
Matches: 60, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 60 1.00
ACGTcount: A:0.11, C:0.18, G:0.25, T:0.46
Consensus pattern (23 bp):
ATTCTATGATGCCTTTGTGGCGT
Found at i:9562885 original size:46 final size:46
Alignment explanation
Indices: 9562814--9562908 Score: 145
Period size: 46 Copynumber: 2.1 Consensus size: 46
9562804 GATAAGATCA
* * * *
9562814 ATTCTGTGATGCCTTTTTGGCGTATTCTATGCTGCCTTTGTGTCGT
1 ATTCTGCGATGCCTTTGTGGCGTATTCTATGATGCCTTTGTGGCGT
*
9562860 ATTCTGCGATGCCTTTGTGGTGTATTCTATGATGCCTTTGTGGCGT
1 ATTCTGCGATGCCTTTGTGGCGTATTCTATGATGCCTTTGTGGCGT
9562906 ATT
1 ATT
9562909 TTGTAACGTC
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.11, C:0.18, G:0.25, T:0.46
Consensus pattern (46 bp):
ATTCTGCGATGCCTTTGTGGCGTATTCTATGATGCCTTTGTGGCGT
Found at i:9565497 original size:14 final size:14
Alignment explanation
Indices: 9565478--9565505 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
9565468 CCAATTTATT
9565478 AATGAATTATTAAA
1 AATGAATTATTAAA
9565492 AATGAATTATTAAA
1 AATGAATTATTAAA
9565506 TATAACTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.36
Consensus pattern (14 bp):
AATGAATTATTAAA
Found at i:9574750 original size:14 final size:14
Alignment explanation
Indices: 9574731--9574758 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
9574721 CAAATTTATT
9574731 AATGAATTATTAAA
1 AATGAATTATTAAA
9574745 AATGAATTATTAAA
1 AATGAATTATTAAA
9574759 TATAAATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.36
Consensus pattern (14 bp):
AATGAATTATTAAA
Found at i:9576692 original size:4 final size:4
Alignment explanation
Indices: 9576683--9576713 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
9576673 CTATTTTTAA
9576683 AATT AATT AATT AATT AATT AATT AA-T AATT
1 AATT AATT AATT AATT AATT AATT AATT AATT
9576714 TAAAAAACCA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 23 0.88
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (4 bp):
AATT
Found at i:9578783 original size:16 final size:16
Alignment explanation
Indices: 9578762--9578792 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
9578752 ATAAATTGAG
9578762 CAAAAAACCTAGAAAC
1 CAAAAAACCTAGAAAC
*
9578778 CAAAAAACTTAGAAA
1 CAAAAAACCTAGAAA
9578793 GTAAGAACAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.65, C:0.19, G:0.06, T:0.10
Consensus pattern (16 bp):
CAAAAAACCTAGAAAC
Found at i:9582718 original size:7 final size:7
Alignment explanation
Indices: 9582706--9582734 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
9582696 TTTGGCTTAA
9582706 TCTTTCT
1 TCTTTCT
9582713 TCTTTCT
1 TCTTTCT
9582720 TCTTTCT
1 TCTTTCT
9582727 TCTTTCT
1 TCTTTCT
9582734 T
1 T
9582735 TCTTCCATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (7 bp):
TCTTTCT
Found at i:9585591 original size:28 final size:28
Alignment explanation
Indices: 9585551--9585740 Score: 136
Period size: 28 Copynumber: 6.7 Consensus size: 28
9585541 ATGTTTATTA
9585551 AAAGGAAGT-CTTTGTGGCGATCTCTGTT
1 AAAGGAA-TCCTTTGTGGCGATCTCTGTT
*
9585579 AAAGGAATCCTTTGTGGTGATCTCTGTT
1 AAAGGAATCCTTTGTGGCGATCTCTGTT
** * ** * *
9585607 AAAAAAATTCTTTGTAACGTTCTTTGTT
1 AAAGGAATCCTTTGTGGCGATCTCTGTT
* * *
9585635 AAAGGAAGCCTTTATGGCTATCTCTGTT
1 AAAGGAATCCTTTGTGGCGATCTCTGTT
* **
9585663 AAAAGG-ATGCCTTTGTGGCTATCTCAATT
1 -AAAGGAAT-CCTTTGTGGCGATCTCTGTT
* * *
9585692 AAATGAATGCC-TTGTGGCAAACTCTGTT
1 AAAGGAAT-CCTTTGTGGCGATCTCTGTT
*
9585720 AAAAGG-ATGCCTTCGTGGCGA
1 -AAAGGAAT-CCTTTGTGGCGA
9585741 GACTCTGAAA
Statistics
Matches: 125, Mismatches: 31, Indels: 11
0.75 0.19 0.07
Matches are distributed among these distances:
27 1 0.01
28 86 0.69
29 38 0.30
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (28 bp):
AAAGGAATCCTTTGTGGCGATCTCTGTT
Found at i:9585765 original size:57 final size:56
Alignment explanation
Indices: 9585656--9585766 Score: 134
Period size: 57 Copynumber: 1.9 Consensus size: 56
9585646 TTATGGCTAT
* * * * * *
9585656 CTCTGTTAAAAGGATGCCTTTGTGGCTATCTCAATTAAATGAATGCCTTGTGGCAAA
1 CTCTGTTAAAAGGATGCCTTCGTGGCGAACTC-ATGAAAGGAAAGCCTTGTGGCAAA
9585713 CTCTGTTAAAAGGATGCCTTCGTGGCGAGACTC-TGAAAGGAAAGCCTCTGTGGC
1 CTCTGTTAAAAGGATGCCTTCGTGGCGA-ACTCATGAAAGGAAAGCCT-TGTGGC
9585767 TATCTTTGGA
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
56 11 0.24
57 32 0.70
58 3 0.07
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (56 bp):
CTCTGTTAAAAGGATGCCTTCGTGGCGAACTCATGAAAGGAAAGCCTTGTGGCAAA
Found at i:9587251 original size:14 final size:15
Alignment explanation
Indices: 9587217--9587254 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
9587207 TAAGGTTTAT
9587217 GAATTATGGAATTAC
1 GAATTATGGAATTAC
9587232 GAATTATGG-ATTA-
1 GAATTATGGAATTAC
9587245 GAGATTATGG
1 GA-ATTATGG
9587255 TTTAAGGGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 2 0.09
14 11 0.50
15 9 0.41
ACGTcount: A:0.37, C:0.03, G:0.26, T:0.34
Consensus pattern (15 bp):
GAATTATGGAATTAC
Found at i:9587544 original size:7 final size:7
Alignment explanation
Indices: 9587532--9587593 Score: 52
Period size: 7 Copynumber: 8.7 Consensus size: 7
9587522 TGTAAAAGAG
9587532 GGGTTAA
1 GGGTTAA
9587539 GGGTTAA
1 GGGTTAA
*
9587546 GGGTTAT
1 GGGTTAA
*
9587553 GGGTTTA
1 GGGTTAA
* *
9587560 GGAGATAG
1 GG-GTTAA
9587568 GGGTTAA
1 GGGTTAA
* *
9587575 CGGTTTA
1 GGGTTAA
*
9587582 GGGTTTA
1 GGGTTAA
9587589 GGGTT
1 GGGTT
9587594 TAGATTAATT
Statistics
Matches: 43, Mismatches: 11, Indels: 2
0.77 0.20 0.04
Matches are distributed among these distances:
7 39 0.91
8 4 0.09
ACGTcount: A:0.21, C:0.02, G:0.44, T:0.34
Consensus pattern (7 bp):
GGGTTAA
Found at i:9588431 original size:33 final size:33
Alignment explanation
Indices: 9588389--9588454 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
9588379 ATCTTGCTTA
9588389 CACAAAAAAATAAGCTTTACAAAGTTTAAAATT
1 CACAAAAAAATAAGCTTTACAAAGTTTAAAATT
9588422 CACAAAAAAATAAGCTTTACAAAGTTTAAAATT
1 CACAAAAAAATAAGCTTTACAAAGTTTAAAATT
9588455 TAACCATGCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.55, C:0.12, G:0.06, T:0.27
Consensus pattern (33 bp):
CACAAAAAAATAAGCTTTACAAAGTTTAAAATT
Found at i:9589253 original size:3 final size:3
Alignment explanation
Indices: 9589245--9589301 Score: 96
Period size: 3 Copynumber: 19.0 Consensus size: 3
9589235 ACACACCTAT
* *
9589245 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ACG ACG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
9589293 ATG ATG ATG
1 ATG ATG ATG
9589302 TTATTAGCCT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.33, C:0.04, G:0.33, T:0.30
Consensus pattern (3 bp):
ATG
Found at i:9598495 original size:22 final size:22
Alignment explanation
Indices: 9598450--9598496 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
9598440 ATAATATAGA
* *
9598450 TTTAATAAATGCAGAAAAATAT
1 TTTAATAAATGCAAAAAAAAAT
9598472 TTTAATAAATG-AAAAGAAAAAT
1 TTTAATAAATGCAAAA-AAAAAT
9598494 TTT
1 TTT
9598497 GAACTGTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 3 0.14
22 19 0.86
ACGTcount: A:0.55, C:0.02, G:0.09, T:0.34
Consensus pattern (22 bp):
TTTAATAAATGCAAAAAAAAAT
Found at i:9607787 original size:42 final size:42
Alignment explanation
Indices: 9607740--9607970 Score: 220
Period size: 42 Copynumber: 5.5 Consensus size: 42
9607730 GGCTTAGCGC
* *
9607740 CTAGCAGGCTTATTGCCAGTGAAACAATATCAGACTTTACGT
1 CTAGCAGGCTTAATGCCGGTGAAACAATATCAGACTTTACGT
* * * * *
9607782 CTAGCAGGCTTAATGTCGGTGAAATAATTTCAAACTTTATGT
1 CTAGCAGGCTTAATGCCGGTGAAACAATATCAGACTTTACGT
* * * *
9607824 ATAGCAGGCTTAATACTGGTGAAATAATATCAGACTTTACGT
1 CTAGCAGGCTTAATGCCGGTGAAACAATATCAGACTTTACGT
* * * *
9607866 CTAGCAGACTTAATGCCGGTGAAAC-ATTTCAGACTATATGT
1 CTAGCAGGCTTAATGCCGGTGAAACAATATCAGACTTTACGT
* * * * *
9607907 CTAGCAGGC-TAAGTGCCGGTG-TACTGA-ATCAGGCTTTAAGC
1 CTAGCAGGCTTAA-TGCCGGTGAAAC-AATATCAGACTTTACGT
9607948 CTAGCAGGC-TAAGTGCCGGTGAA
1 CTAGCAGGCTTAA-TGCCGGTGAA
9607971 TCTGTTTAAA
Statistics
Matches: 155, Mismatches: 30, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
40 5 0.03
41 59 0.38
42 91 0.59
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.29
Consensus pattern (42 bp):
CTAGCAGGCTTAATGCCGGTGAAACAATATCAGACTTTACGT
Found at i:9607865 original size:84 final size:83
Alignment explanation
Indices: 9607758--9607916 Score: 246
Period size: 84 Copynumber: 1.9 Consensus size: 83
9607748 CTTATTGCCA
* * *
9607758 GTGAAACAATATCAGACTTTACGTCTAGCAGGCTTAATGTCGGTGAAATAATTTCAAACTTTATG
1 GTGAAACAATATCAGACTTTACGTCTAGCAGACTTAATGCCGGTGAAA-AATTTCAAACTATATG
9607823 TATAGCAGGCTTAATACTG
65 TATAGCAGGCTTAATACTG
* * *
9607842 GTGAAATAATATCAGACTTTACGTCTAGCAGACTTAATGCCGGTGAAACATTTCAGACTATATGT
1 GTGAAACAATATCAGACTTTACGTCTAGCAGACTTAATGCCGGTGAAAAATTTCAAACTATATGT
*
9607907 CTAGCAGGCT
66 ATAGCAGGCT
9607917 AAGTGCCGGT
Statistics
Matches: 68, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
83 23 0.34
84 45 0.66
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (83 bp):
GTGAAACAATATCAGACTTTACGTCTAGCAGACTTAATGCCGGTGAAAAATTTCAAACTATATGT
ATAGCAGGCTTAATACTG
Found at i:9609348 original size:344 final size:344
Alignment explanation
Indices: 9608722--9609755 Score: 1908
Period size: 344 Copynumber: 3.0 Consensus size: 344
9608712 TCGTAATTTG
*
9608722 TTATATTGTATATGAATTTAATAGCCATACGAAATTGGTTTATTTCCTTATGGATTTGCTAGTTT
1 TTATATTGTATATGAACTTAATAGCCATACGAAATTGGTTTATTTCCTTATGGATTTGCTAGTTT
9608787 GTAATGTCTTTGTTTTGTTTTAAATGGTCAAAAGAGAAGCTT-AAATTTTGCATGTTTAATATTA
66 GTAATGTCTTTGTTTTGTTTTAAATGGTCAAAAGAGAAGCTTAAAATTTTGCATGTTTAATATTA
*
9608851 GACCTAGCTTATCATATGGAACTGTTATAATTATTGAACTTTAATGAATGTTTGTTCTGAGTTGT
131 GACCTAGCTTATCATATGTAACTGTTATAATTATTGAACTTTAATGAATGTTTGTTCTGAGTTGT
* *
9608916 GTTTTGATTAGTAATGCCTCTTAACCCTAATTCGGCAACGAATACGGGTTAGGGGTGTTACAAAT
196 GTTTTGATTAGTAATGCCTCTTAACCCTAATTCGGTAACGGATACGGGTTAGGGGTGTTACAAAT
* *
9608981 GGTATTTCTACAGAAGTTTTTTCTATTGATAACATAATGAAATTTTTATCAATAGAAAATGGTAA
261 GGTATTTCTACAGAAGTTTTTTCTACTGATAACATAATAAAATTTTTATCAATAGAAAATGGTAA
9609046 ATGTTGATATATAAAATTA
326 ATGTTGATATATAAAATTA
9609065 TTATATTGTATATGAACTTAATAGCCATACGAAATTGGTTTATTTCCTTATGGATTTGCTAGTTT
1 TTATATTGTATATGAACTTAATAGCCATACGAAATTGGTTTATTTCCTTATGGATTTGCTAGTTT
9609130 GTAATGTCTTTGTTTTGTTTTAAATGGTCAAAAGAGAAGCTTAAAATTTTGCATGTTTAATATTA
66 GTAATGTCTTTGTTTTGTTTTAAATGGTCAAAAGAGAAGCTTAAAATTTTGCATGTTTAATATTA
*
9609195 GACCTAGCTTATCATATGTAACTGTTATAATTATTGAACTTTAATGAATGTCTGTTCTGAGTTGT
131 GACCTAGCTTATCATATGTAACTGTTATAATTATTGAACTTTAATGAATGTTTGTTCTGAGTTGT
* *
9609260 GTTTTGATTAGTAATGCCTCTTAACCCTAATTCGGTAACGGATAAGGGTTAGGGGTGTTACAATT
196 GTTTTGATTAGTAATGCCTCTTAACCCTAATTCGGTAACGGATACGGGTTAGGGGTGTTACAAAT
* * *
9609325 GGTATTTCTACAGAATTTTTTTCTACTGATAACATAATAAAAATTTTATCAATAGAAAATGGTCA
261 GGTATTTCTACAGAAGTTTTTTCTACTGATAACATAATAAAATTTTTATCAATAGAAAATGGTAA
9609390 ATGTTGATATATAAAATTA
326 ATGTTGATATATAAAATTA
9609409 TTATATTGTATATGAACTTAATAGCCATACGAAATTGGTTTATTTCCTTATGGATTTGCTAGTTT
1 TTATATTGTATATGAACTTAATAGCCATACGAAATTGGTTTATTTCCTTATGGATTTGCTAGTTT
9609474 GTAATGTCTTTGTTTTGTTTTAAATGGTCAAAAGAGAAGCTTAAAATTTTGCATGTTTAATATTA
66 GTAATGTCTTTGTTTTGTTTTAAATGGTCAAAAGAGAAGCTTAAAATTTTGCATGTTTAATATTA
9609539 GACCTAGCTTATCATATGTAACTGTTATAATTATTGAACTTTAATGAATGTTTGTTCTGAGTTGT
131 GACCTAGCTTATCATATGTAACTGTTATAATTATTGAACTTTAATGAATGTTTGTTCTGAGTTGT
* * *
9609604 GTTTTGATTAGCAATGCCTCTTAACCCTAATTAGGTAATGGATACGGGTTAGGGGTGTTACAAAT
196 GTTTTGATTAGTAATGCCTCTTAACCCTAATTCGGTAACGGATACGGGTTAGGGGTGTTACAAAT
**
9609669 GGTATTTCTACAGAAGTTTTTTCTACTGATAACATAATTTAATTTTTATCAATAGAAAATGGTAA
261 GGTATTTCTACAGAAGTTTTTTCTACTGATAACATAATAAAATTTTTATCAATAGAAAATGGTAA
9609734 ATGTTGATATATAAAATTA
326 ATGTTGATATATAAAATTA
9609753 TTA
1 TTA
9609756 CCTAATAATA
Statistics
Matches: 667, Mismatches: 23, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
343 106 0.16
344 561 0.84
ACGTcount: A:0.32, C:0.10, G:0.17, T:0.42
Consensus pattern (344 bp):
TTATATTGTATATGAACTTAATAGCCATACGAAATTGGTTTATTTCCTTATGGATTTGCTAGTTT
GTAATGTCTTTGTTTTGTTTTAAATGGTCAAAAGAGAAGCTTAAAATTTTGCATGTTTAATATTA
GACCTAGCTTATCATATGTAACTGTTATAATTATTGAACTTTAATGAATGTTTGTTCTGAGTTGT
GTTTTGATTAGTAATGCCTCTTAACCCTAATTCGGTAACGGATACGGGTTAGGGGTGTTACAAAT
GGTATTTCTACAGAAGTTTTTTCTACTGATAACATAATAAAATTTTTATCAATAGAAAATGGTAA
ATGTTGATATATAAAATTA
Found at i:9621898 original size:29 final size:29
Alignment explanation
Indices: 9621865--9621925 Score: 113
Period size: 29 Copynumber: 2.1 Consensus size: 29
9621855 GCTTCCACAT
*
9621865 GATAATGCATACAATTATTCAAAGATAAC
1 GATAATGCATAAAATTATTCAAAGATAAC
9621894 GATAATGCATAAAATTATTCAAAGATAAC
1 GATAATGCATAAAATTATTCAAAGATAAC
9621923 GAT
1 GAT
9621926 TTCTACCTCT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.49, C:0.11, G:0.11, T:0.28
Consensus pattern (29 bp):
GATAATGCATAAAATTATTCAAAGATAAC
Found at i:9622075 original size:36 final size:36
Alignment explanation
Indices: 9622028--9622099 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
9622018 AAGGTTAGTT
9622028 AACTATATGGTTATATTTTCCCCTTCCTTTATAATA
1 AACTATATGGTTATATTTTCCCCTTCCTTTATAATA
9622064 AACTATATGGTTATATTTTCCCCTTCCTTTATAATA
1 AACTATATGGTTATATTTTCCCCTTCCTTTATAATA
9622100 GTTGTAATGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.28, C:0.19, G:0.06, T:0.47
Consensus pattern (36 bp):
AACTATATGGTTATATTTTCCCCTTCCTTTATAATA
Found at i:9626779 original size:15 final size:15
Alignment explanation
Indices: 9626759--9626787 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
9626749 GTCTTATAAC
9626759 AAGTTAAATAACAAT
1 AAGTTAAATAACAAT
9626774 AAGTTAAATAACAA
1 AAGTTAAATAACAA
9626788 GTAAACACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.62, C:0.07, G:0.07, T:0.24
Consensus pattern (15 bp):
AAGTTAAATAACAAT
Found at i:9634323 original size:26 final size:26
Alignment explanation
Indices: 9634290--9634358 Score: 120
Period size: 26 Copynumber: 2.7 Consensus size: 26
9634280 AACACACCAA
*
9634290 TATCGCAGCAAAGCTGCCAGTAATAG
1 TATCGCAGCAAAGCTGCCAGTAACAG
*
9634316 TATTGCAGCAAAGCTGCCAGTAACAG
1 TATCGCAGCAAAGCTGCCAGTAACAG
9634342 TATCGCAGCAAAGCTGC
1 TATCGCAGCAAAGCTGC
9634359 TAGCATGTCA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.33, C:0.25, G:0.23, T:0.19
Consensus pattern (26 bp):
TATCGCAGCAAAGCTGCCAGTAACAG
Found at i:9638486 original size:18 final size:17
Alignment explanation
Indices: 9638453--9638491 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
9638443 TTTTATAAAT
9638453 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
9638471 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
9638488 TGTG
1 TGTG
9638492 GAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:9638744 original size:23 final size:23
Alignment explanation
Indices: 9638717--9638792 Score: 116
Period size: 23 Copynumber: 3.3 Consensus size: 23
9638707 AGTGTTATTG
*
9638717 ATCAGTGGTAGCTTCGGCTATAT
1 ATCAGTGGTAGCTTCGGCTACAT
* * *
9638740 TTCAGTGGTAGCTACGGCTGCAT
1 ATCAGTGGTAGCTTCGGCTACAT
9638763 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
9638786 ATCAGTG
1 ATCAGTG
9638793 TGGCACTTAT
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:9644169 original size:26 final size:26
Alignment explanation
Indices: 9644140--9644220 Score: 126
Period size: 26 Copynumber: 3.1 Consensus size: 26
9644130 AACACACCAA
9644140 TATCGCAGTAAAGCTGCCAGTAACAG
1 TATCGCAGTAAAGCTGCCAGTAACAG
** * *
9644166 TATCGCAACAAAGTTGCTAGTAACAG
1 TATCGCAGTAAAGCTGCCAGTAACAG
9644192 TATCGCAGTAAAGCTGCCAGTAACAG
1 TATCGCAGTAAAGCTGCCAGTAACAG
9644218 TAT
1 TAT
9644221 ACTTCCTCCA
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.22
Consensus pattern (26 bp):
TATCGCAGTAAAGCTGCCAGTAACAG
Found at i:9645174 original size:18 final size:18
Alignment explanation
Indices: 9645151--9645193 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
9645141 AAAAGAAAAA
9645151 TATACCCAAAATGAGCAG
1 TATACCCAAAATGAGCAG
*
9645169 TATACCCAAAATGAGTAG
1 TATACCCAAAATGAGCAG
9645187 TATACCC
1 TATACCC
9645194 CTCTGGCCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.42, C:0.23, G:0.14, T:0.21
Consensus pattern (18 bp):
TATACCCAAAATGAGCAG
Found at i:9647627 original size:33 final size:33
Alignment explanation
Indices: 9647561--9647636 Score: 100
Period size: 33 Copynumber: 2.3 Consensus size: 33
9647551 ATCCTGCCAC
* *
9647561 TGAGGAGAAGGCCACAAAAGGGCCGAAGGGAGA
1 TGAGGAGAAGGCCACAAAAGGACCGAAGAGAGA
*
9647594 TGAGTAGAAGGCCACAAAAGGACC-AGAGAGAGA
1 TGAGGAGAAGGCCACAAAAGGACCGA-AGAGAGA
*
9647627 TGAAGAGAAG
1 TGAGGAGAAG
9647637 ACTAAATCAG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
32 1 0.03
33 36 0.97
ACGTcount: A:0.43, C:0.13, G:0.38, T:0.05
Consensus pattern (33 bp):
TGAGGAGAAGGCCACAAAAGGACCGAAGAGAGA
Found at i:9654755 original size:16 final size:16
Alignment explanation
Indices: 9654731--9654761 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
9654721 ATTACTAATT
9654731 ACAAATTTATTTCATA
1 ACAAATTTATTTCATA
*
9654747 ACAATTTTATTTCAT
1 ACAAATTTATTTCAT
9654762 TACAGTGAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.13, G:0.00, T:0.48
Consensus pattern (16 bp):
ACAAATTTATTTCATA
Found at i:9655537 original size:5 final size:5
Alignment explanation
Indices: 9655527--9655569 Score: 63
Period size: 5 Copynumber: 9.0 Consensus size: 5
9655517 CATACATACA
*
9655527 CATAT CATAT CATAT CATAT CATAT CAT-T TATAT CATAT -ATAT
1 CATAT CATAT CATAT CATAT CATAT CATAT CATAT CATAT CATAT
9655570 AATAAAATAG
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
4 7 0.20
5 28 0.80
ACGTcount: A:0.40, C:0.16, G:0.00, T:0.44
Consensus pattern (5 bp):
CATAT
Found at i:9665971 original size:27 final size:27
Alignment explanation
Indices: 9665914--9665974 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
9665904 GACTTTTTTT
* * *
9665914 GGGTGTTGTTTTGCTTTTGTTTGGTTT
1 GGGTTTTGTTTTACTTTTGTTTGGTTC
*
9665941 GGGTTTTGTTTTATTTTTG-TTGTGTTC
1 GGGTTTTGTTTTACTTTTGTTTG-GTTC
9665968 GGGTTTT
1 GGGTTTT
9665975 ATTTGTAATT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 3 0.10
27 26 0.90
ACGTcount: A:0.02, C:0.03, G:0.31, T:0.64
Consensus pattern (27 bp):
GGGTTTTGTTTTACTTTTGTTTGGTTC
Found at i:9667806 original size:30 final size:31
Alignment explanation
Indices: 9667760--9667837 Score: 95
Period size: 30 Copynumber: 2.5 Consensus size: 31
9667750 TTAATATAAC
* * *
9667760 ATTTGGTACCTGAACTTGACATTTTTTC-TA
1 ATTTAGTACCTAAACTTGACACTTTTTCTTA
*
9667790 ATTTAGTACCTAAACTTGATACTTTTTCTTA
1 ATTTAGTACCTAAACTTGACACTTTTTCTTA
* *
9667821 AGTTAGTACTTAAACTT
1 ATTTAGTACCTAAACTT
9667838 TTTTGGGTCT
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
30 24 0.59
31 17 0.41
ACGTcount: A:0.28, C:0.15, G:0.10, T:0.46
Consensus pattern (31 bp):
ATTTAGTACCTAAACTTGACACTTTTTCTTA
Found at i:9668422 original size:61 final size:60
Alignment explanation
Indices: 9668312--9668538 Score: 314
Period size: 60 Copynumber: 3.8 Consensus size: 60
9668302 TTGAACCTAA
* * *
9668312 AAAAAAGTTTAGGTACCAAATTAAGAAAAAAATATCAAATTCATGTACCATATTGGGCCC
1 AAAAAAGTTTAGGTACCAAATTAAGAAAAAAATGTCAAGTTCAGGTACCATATTGGGCCC
9668372 AAAAAAGTTTAGGTACCAAATTAAGAAAAAAAATGTCAAGTTCAGGTACCATATTGGGCCC
1 AAAAAAGTTTAGGTACCAAATTAAG-AAAAAAATGTCAAGTTCAGGTACCATATTGGGCCC
* * * * * *
9668433 AAAAAAAGCTTAGGTACCAAATT-AGGAAAAAGTGTCAAGTTCAGGTACTAAATTGGGCCGA
1 -AAAAAAGTTTAGGTACCAAATTAAGAAAAAAATGTCAAGTTCAGGTACCATATTGGGCC-C
* *
9668494 AAAAAAGATTAGGTACCAAATTAAG-AAAAAGTGTCAAGTTCAGGT
1 AAAAAAGTTTAGGTACCAAATTAAGAAAAAAATGTCAAGTTCAGGT
9668539 CCCAAATGTA
Statistics
Matches: 153, Mismatches: 10, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
60 96 0.63
61 36 0.24
62 21 0.14
ACGTcount: A:0.45, C:0.13, G:0.19, T:0.23
Consensus pattern (60 bp):
AAAAAAGTTTAGGTACCAAATTAAGAAAAAAATGTCAAGTTCAGGTACCATATTGGGCCC
Found at i:9668480 original size:31 final size:31
Alignment explanation
Indices: 9668444--9668545 Score: 90
Period size: 31 Copynumber: 3.4 Consensus size: 31
9668434 AAAAAAGCTT
9668444 AGGTACCAAATTAGGAAAAAGTGTCAAGTTC
1 AGGTACCAAATTAGGAAAAAGTGTCAAGTTC
* *
9668475 AGGTACTAAATTGGGCCGAAAAA-----AAGATT-
1 AGGTACCAAATT-AG--GAAAAAGTGTCAAG-TTC
*
9668504 AGGTACCAAATTAAGAAAAAGTGTCAAGTTC
1 AGGTACCAAATTAGGAAAAAGTGTCAAGTTC
*
9668535 AGGTCCCAAAT
1 AGGTACCAAAT
9668546 GTAATATTAA
Statistics
Matches: 55, Mismatches: 6, Indels: 20
0.68 0.07 0.25
Matches are distributed among these distances:
26 6 0.11
29 14 0.25
30 4 0.07
31 24 0.44
32 1 0.02
34 6 0.11
ACGTcount: A:0.43, C:0.14, G:0.22, T:0.22
Consensus pattern (31 bp):
AGGTACCAAATTAGGAAAAAGTGTCAAGTTC
Found at i:9668510 original size:122 final size:120
Alignment explanation
Indices: 9668311--9668538 Score: 323
Period size: 122 Copynumber: 1.9 Consensus size: 120
9668301 ATTGAACCTA
* * * *
9668311 AAAAAAAGTTTAGGTACCAAATTAAGAAAAAAATATCAAATTCATGTACCATATTGGGCCCAAAA
1 AAAAAAAGCTTAGGTACCAAATTAAGAAAAAAATATCAAATTCAGGTACCAAATTGGGCCAAAAA
*
9668376 AAGTTTAGGTACCAAATTAAGAAAAAAAATGTCAAGTTCAGGTACCATATTGGGCCC
66 AAGATTAGGTACCAAATTAAG--AAAAAATGTCAAGTTCAGGTACCATATTGGGCCC
* * * * *
9668433 AAAAAAAGCTTAGGTACCAAATT-AGGAAAAAGTGTCAAGTTCAGGTACTAAATTGGGCCGAAAA
1 AAAAAAAGCTTAGGTACCAAATTAAGAAAAAAATATCAAATTCAGGTACCAAATTGGGCC-AAAA
*
9668497 AAAGATTAGGTACCAAATTAAGAAAAAGTGTCAAGTTCAGGT
65 AAAGATTAGGTACCAAATTAAGAAAAAATGTCAAGTTCAGGT
9668539 CCCAAATGTA
Statistics
Matches: 94, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
120 19 0.20
121 29 0.31
122 46 0.49
ACGTcount: A:0.46, C:0.13, G:0.18, T:0.23
Consensus pattern (120 bp):
AAAAAAAGCTTAGGTACCAAATTAAGAAAAAAATATCAAATTCAGGTACCAAATTGGGCCAAAAA
AAGATTAGGTACCAAATTAAGAAAAAATGTCAAGTTCAGGTACCATATTGGGCCC
Found at i:9668514 original size:29 final size:28
Alignment explanation
Indices: 9668409--9668515 Score: 76
Period size: 29 Copynumber: 3.6 Consensus size: 28
9668399 AAAAAATGTC
* *
9668409 AAGTTCAGGTACCATATTGGGCCCAAAAA
1 AAGTT-AGGTACCAAATTGGGCCGAAAAA
*
9668438 AAGCTTAGGTACCAAATT-AG--GAAAAA
1 AAG-TTAGGTACCAAATTGGGCCGAAAAA
*
9668464 GTGTCAAGTTCAGGTACTAAATTGGGCCGAAAAA
1 -----AAGTT-AGGTACCAAATTGGGCCGAAAAA
9668498 AAGATTAGGTACCAAATT
1 AAG-TTAGGTACCAAATT
9668516 AAGAAAAAGT
Statistics
Matches: 61, Mismatches: 6, Indels: 22
0.69 0.07 0.25
Matches are distributed among these distances:
26 5 0.08
28 1 0.02
29 28 0.46
30 6 0.10
31 14 0.23
32 1 0.02
34 6 0.10
ACGTcount: A:0.41, C:0.15, G:0.21, T:0.22
Consensus pattern (28 bp):
AAGTTAGGTACCAAATTGGGCCGAAAAA
Found at i:9674561 original size:26 final size:26
Alignment explanation
Indices: 9674525--9674588 Score: 101
Period size: 26 Copynumber: 2.5 Consensus size: 26
9674515 ATCCTGTAAG
9674525 TATTCTGAAACTGATACATGCTATGA
1 TATTCTGAAACTGATACATGCTATGA
* * *
9674551 TATTCTAAAACTGATATATGTTATGA
1 TATTCTGAAACTGATACATGCTATGA
9674577 TATTCTGAAACT
1 TATTCTGAAACT
9674589 ACTGTAGGTA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.39
Consensus pattern (26 bp):
TATTCTGAAACTGATACATGCTATGA
Found at i:9681492 original size:34 final size:35
Alignment explanation
Indices: 9681449--9681515 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
9681439 TGTTACTGCT
* * *
9681449 ACTGATACTGTAATGGGCTAAGGTCCAA-ACTGGA
1 ACTGATACTGAAAAGGGCTAAGGCCCAAGACTGGA
*
9681483 ACTGATACTGAAAAGGGCTTAGGCCCAAGACTG
1 ACTGATACTGAAAAGGGCTAAGGCCCAAGACTG
9681516 TTCAACTGTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 24 0.86
35 4 0.14
ACGTcount: A:0.33, C:0.19, G:0.27, T:0.21
Consensus pattern (35 bp):
ACTGATACTGAAAAGGGCTAAGGCCCAAGACTGGA
Found at i:9690337 original size:9 final size:9
Alignment explanation
Indices: 9690323--9690354 Score: 55
Period size: 9 Copynumber: 3.4 Consensus size: 9
9690313 GGTATGGAAT
9690323 GAAGCGAAG
1 GAAGCGAAG
9690332 GAAGCGAAG
1 GAAGCGAAG
9690341 GAAGCGAAAG
1 GAAGCG-AAG
9690351 GAAG
1 GAAG
9690355 ATTAAATTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 15 0.68
10 7 0.32
ACGTcount: A:0.47, C:0.09, G:0.44, T:0.00
Consensus pattern (9 bp):
GAAGCGAAG
Found at i:9695716 original size:215 final size:214
Alignment explanation
Indices: 9695346--9695749 Score: 659
Period size: 215 Copynumber: 1.9 Consensus size: 214
9695336 ATGTCAATTC
*
9695346 ACCCGGGGAGTACGAAAATGTACAACGACTTGAAACGTCGGTTTTGGTGGCATGGTATGAACGAG
1 ACCCGGGGAGTACGAAAATGTACAACGACTTGAAACGTCAGTTTTGGTGGCATGGTATGAACGAG
9695411 ACATCTCCGACTTTGTTTCGAGATGTTTAATATGTCAACAAGTGAAAGCGGAACATCAAGTGCCT
66 ACATCTCCGACTTTGTTTCGAGATGTTTAATATGTCAACAAGTGAAAGCGGAACATCAAGTGCCT
* * *
9695476 TCAGGATTACTCCAGCCGATCATGATACCTGAGTGGAAATGGGATCGAGTCACAATGGACTTTGT
131 ACAGGATTACTCCAGCCAATCATGATACCTGAATGGAAATGGGATCGAGTCACAATGGACTTTGT
9695541 GTCCGGACTGCCATTGTCA
196 GTCCGGACTGCCATTGTCA
* *
9695560 ACCCGGGGAGTACGAAAATGTACAACGATTTGAGACGTCAGTTTTGGTGGCATGGTATGAAACGA
1 ACCCGGGGAGTACGAAAATGTACAACGACTTGAAACGTCAGTTTTGGTGGCATGGTATG-AACGA
* * *
9695625 GACATTTCCGATTTTGTTTCGA-AGTGTTTAATATGTCAGCAAGT-AAAGGCGGAACATCAAGTG
65 GACATCTCCGACTTTGTTTCGAGA-TGTTTAATATGTCAACAAGTGAAA-GCGGAACATCAAGTG
* * *
9695688 CCTACGGGTTTACTCCAGCCAATCATGATACCTGAATGGAAATGGGATCGAGTCACGATGGA
128 CCTACAGGATTACTCCAGCCAATCATGATACCTGAATGGAAATGGGATCGAGTCACAATGGA
9695750 TTTCGTATCT
Statistics
Matches: 175, Mismatches: 12, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
214 60 0.34
215 115 0.66
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (214 bp):
ACCCGGGGAGTACGAAAATGTACAACGACTTGAAACGTCAGTTTTGGTGGCATGGTATGAACGAG
ACATCTCCGACTTTGTTTCGAGATGTTTAATATGTCAACAAGTGAAAGCGGAACATCAAGTGCCT
ACAGGATTACTCCAGCCAATCATGATACCTGAATGGAAATGGGATCGAGTCACAATGGACTTTGT
GTCCGGACTGCCATTGTCA
Found at i:9698701 original size:40 final size:40
Alignment explanation
Indices: 9698500--9698693 Score: 300
Period size: 40 Copynumber: 4.9 Consensus size: 40
9698490 ATTCGGATTG
* *
9698500 ATAACCGGGCTAAG-CTCGAAGGCATTTGTGAGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
9698539 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
9698579 ATAACCGGGCCAAGTCCCAAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
9698619 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
9698659 ATAACCAGGCTAAGTCCCGAAGGCATTTGAGCGAG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
9698694 AAGCTATATC
Statistics
Matches: 142, Mismatches: 12, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
39 13 0.09
40 129 0.91
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:9698701 original size:80 final size:80
Alignment explanation
Indices: 9698500--9698720 Score: 304
Period size: 80 Copynumber: 2.8 Consensus size: 80
9698490 ATTCGGATTG
* *
9698500 ATAACCGGGCTAAG-CTCGAAGGCATTTGTGAGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
*
9698564 TTTGTGCGAGTTACT
66 ATTGTGCGAGTTACT
* * * *
9698579 ATAACCGGGCCAAGTCCCAAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
9698644 ATTGTGCGAGTTACT
66 ATTGTGCGAGTTACT
* * * **
9698659 ATAACCAGGCTAAGTCCCGAAGGCATTTGAGCGAG-AAGCTATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
9698721 TACTTGGTTT
Statistics
Matches: 124, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
79 28 0.23
80 96 0.77
ACGTcount: A:0.29, C:0.23, G:0.27, T:0.22
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
ATTGTGCGAGTTACT
Found at i:9705821 original size:16 final size:16
Alignment explanation
Indices: 9705797--9705828 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
9705787 CGAATGTGCA
*
9705797 GCTTTAAAGACTCTGT
1 GCTTCAAAGACTCTGT
9705813 GCTTCAAAGACTCTGT
1 GCTTCAAAGACTCTGT
9705829 TAGTGACCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (16 bp):
GCTTCAAAGACTCTGT
Found at i:9721094 original size:234 final size:234
Alignment explanation
Indices: 9720685--9721137 Score: 861
Period size: 234 Copynumber: 1.9 Consensus size: 234
9720675 GGGTGTTACA
*
9720685 GAATTGCTTTTGGAAAAATCGATTGAATGAAGACAATACTTAAGGAAAAATCCACCTAGACTGTA
1 GAATTGCTTTTGGAAAAATCGATTGAATGAAGACAATACCTAAGGAAAAATCCACCTAGACTGTA
9720750 CTTGCTATTCTGGCTCCGAATCGGACGATTTATTCATTTAACTTGTTCCGTAGAGATCCCTAAGT
66 CTTGCTATTCTGGCTCCGAATCGGACGATTTATTCATTTAACTTGTTCCGTAGAGATCCCTAAGT
9720815 TATGTTATTATCCCTATTCAAGACTAATAACGTCTAATCCCTAGATTGAATAATTGAGACCTTTC
131 TATGTTATTATCCCTATTCAAGACTAATAACGTCTAATCCCTAGATTGAATAATTGAGACCTTTC
9720880 TCTCATTAACACCCTAGGGTTGCAGAGAATGGAATTGGG
196 TCTCATTAACACCCTAGGGTTGCAGAGAATGGAATTGGG
** * *
9720919 GAATTGCTTTTGGGGAAATCGATTGAATTAAGGCAATACCTAAGGAAAAATCCACCTAGACTGTA
1 GAATTGCTTTTGGAAAAATCGATTGAATGAAGACAATACCTAAGGAAAAATCCACCTAGACTGTA
9720984 CTTGCTATTCTGGCTCCGAATCGGACGATTTATTCATTTAACTTGTTCCGTAGAGATCCCTAAGT
66 CTTGCTATTCTGGCTCCGAATCGGACGATTTATTCATTTAACTTGTTCCGTAGAGATCCCTAAGT
9721049 TATGTTATTATCCCTATTCAAGACTAATAACGTCTAATCCCTAGATTGAATAATTGAGACCTTTC
131 TATGTTATTATCCCTATTCAAGACTAATAACGTCTAATCCCTAGATTGAATAATTGAGACCTTTC
9721114 TCTCATTAACACCCTAGGGTTGCA
196 TCTCATTAACACCCTAGGGTTGCA
9721138 TTAACTCGAT
Statistics
Matches: 214, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
234 214 1.00
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.32
Consensus pattern (234 bp):
GAATTGCTTTTGGAAAAATCGATTGAATGAAGACAATACCTAAGGAAAAATCCACCTAGACTGTA
CTTGCTATTCTGGCTCCGAATCGGACGATTTATTCATTTAACTTGTTCCGTAGAGATCCCTAAGT
TATGTTATTATCCCTATTCAAGACTAATAACGTCTAATCCCTAGATTGAATAATTGAGACCTTTC
TCTCATTAACACCCTAGGGTTGCAGAGAATGGAATTGGG
Found at i:9726480 original size:43 final size:42
Alignment explanation
Indices: 9726432--9726588 Score: 165
Period size: 43 Copynumber: 3.7 Consensus size: 42
9726422 AGCTTGTACA
* *
9726432 ATGCCAACGTTCTAGACGTGGTCTTACATGTAATCAAATATTG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAA-ATTG
* * *
9726475 ATGCC-ACTGTCCCAAACAG-GGTCTTACATGAAATCAAAAATG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGTAATCAAAATTG
** * * *
9726517 ATGCCAACGTCCCAGATATGGTTTTACACGTAAATACCAAATTG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGT-AAT-CAAAATTG
9726561 ATGCCAACGTCCCAGACGTGGTCTTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
9726589 CGAAATCAGA
Statistics
Matches: 92, Mismatches: 16, Indels: 11
0.77 0.13 0.09
Matches are distributed among these distances:
42 26 0.28
43 34 0.37
44 32 0.35
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAAATTG
Found at i:9728524 original size:40 final size:40
Alignment explanation
Indices: 9728469--9728549 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
9728459 TGCCATTTTG
*
9728469 ATGCTCGATTGAAAACTATTATTGTATGCGAATTCAATCA
1 ATGCTCGATTGAAAACTATTATGGTATGCGAATTCAATCA
9728509 ATGCTCGATTGAAAACTATTATGGTATGCGAATTCAATCA
1 ATGCTCGATTGAAAACTATTATGGTATGCGAATTCAATCA
9728549 A
1 A
9728550 AGGAAAATAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.33
Consensus pattern (40 bp):
ATGCTCGATTGAAAACTATTATGGTATGCGAATTCAATCA
Found at i:9734129 original size:43 final size:42
Alignment explanation
Indices: 9734068--9734241 Score: 167
Period size: 43 Copynumber: 4.1 Consensus size: 42
9734058 AAAGCTCGTA
* * * * *
9734068 CGATGCCAATGTCTCAGACGTGGTTTTACATGTAATCAAATAT
1 CGATGCC-ACGTCCCAGACGTGGTCTTACACGAAATCAAATAT
*
9734111 CGATGCCACTGTCCCAGACAG-GGTCTTACACAAAATCAAATA-
1 CGATGCCAC-GTCCCAGAC-GTGGTCTTACACGAAATCAAATAT
* *
9734153 AGATGCCAACGTCCCAAACGTGGTCTTACACGTAAATACAAA-AT
1 CGATGCC-ACGTCCCAGACGTGGTCTTACACG-AAAT-CAAATAT
* *
9734197 CGATGCTAACGTCCCAGACGTCGTCTTACACGAAATC-AATAT
1 CGATGC-CACGTCCCAGACGTGGTCTTACACGAAATCAAATAT
9734239 CGA
1 CGA
9734242 AAACCCTATG
Statistics
Matches: 109, Mismatches: 13, Indels: 19
0.77 0.09 0.13
Matches are distributed among these distances:
41 3 0.03
42 31 0.28
43 43 0.39
44 32 0.29
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (42 bp):
CGATGCCACGTCCCAGACGTGGTCTTACACGAAATCAAATAT
Found at i:9734223 original size:86 final size:85
Alignment explanation
Indices: 9734069--9734235 Score: 205
Period size: 86 Copynumber: 2.0 Consensus size: 85
9734059 AAGCTCGTAC
* * * * * * *
9734069 GATGCCAATGTCTCAGACGTGGTTTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAGGG
1 GATGCCAACGTCCCAAACGTGGTCTTACACGTAATCAAATATCGATGCAACTGTCCCAGACAGCG
9734134 TCTTACACAAAATCAAATAA
66 TCTTACACAAAATCAAATAA
9734154 GATGCCAACGTCCCAAACGTGGTCTTACACGTAAATACAAA-ATCGATGCTAAC-GTCCCAGAC-
1 GATGCCAACGTCCCAAACGTGGTCTTACACGT-AAT-CAAATATCGATGC-AACTGTCCCAGACA
*
9734216 GTCGTCTTACACGAAATCAA
63 G-CGTCTTACACAAAATCAA
9734236 TATCGAAAAC
Statistics
Matches: 70, Mismatches: 8, Indels: 7
0.82 0.09 0.08
Matches are distributed among these distances:
85 28 0.40
86 36 0.51
87 6 0.09
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.23
Consensus pattern (85 bp):
GATGCCAACGTCCCAAACGTGGTCTTACACGTAATCAAATATCGATGCAACTGTCCCAGACAGCG
TCTTACACAAAATCAAATAA
Found at i:9735528 original size:13 final size:13
Alignment explanation
Indices: 9735510--9735540 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
9735500 CATGTGCCTG
9735510 ACACGGTTGAGTC
1 ACACGGTTGAGTC
9735523 ACACGGTTGAGTC
1 ACACGGTTGAGTC
*
9735536 GCACG
1 ACACG
9735541 CCTCTAAGTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.23, C:0.26, G:0.32, T:0.19
Consensus pattern (13 bp):
ACACGGTTGAGTC
Found at i:9739412 original size:231 final size:231
Alignment explanation
Indices: 9739004--9739463 Score: 902
Period size: 231 Copynumber: 2.0 Consensus size: 231
9738994 CTGAAACTCA
*
9739004 AAATCCAGTTCCGTGAATTTTCCCTGGAACTAGACTCATATACCTATATGGTAGAATTTTTTTAG
1 AAATACAGTTCCGTGAATTTTCCCTGGAACTAGACTCATATACCTATATGGTAGAATTTTTTTAG
9739069 AATTTTTGGTCGGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCATGTTACAGGGATCGACT
66 AATTTTTGGTCGGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCATGTTACAGGGATCGACT
9739134 ACACTGACCTTTGCGCATTACGACTTGGATATCTCCCTGCACAGAGCTTCAATACTGATATCGTT
131 ACACTGACCTTTGCGCATTACGACTTGGATATCTCCCTGCACAGAGCTTCAATACTGATATCGTT
9739199 TGTTTCTATAGAAACTAGACTCAGAGAGGAATCTGT
196 TGTTTCTATAGAAACTAGACTCAGAGAGGAATCTGT
9739235 AAATACAGTTCCGTGAATTTTCCCTGGAACTAGACTCATATACCTATATGGTAGAATTTTTTTAG
1 AAATACAGTTCCGTGAATTTTCCCTGGAACTAGACTCATATACCTATATGGTAGAATTTTTTTAG
9739300 AATTTTTGGTCGGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCATGTTACAGGGATCGACT
66 AATTTTTGGTCGGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCATGTTACAGGGATCGACT
9739365 ACACTGACCTTTGCGCATTACGACTTGGATATCTCCCTGCACAGAGCTTCAATACTGATATCGTT
131 ACACTGACCTTTGCGCATTACGACTTGGATATCTCCCTGCACAGAGCTTCAATACTGATATCGTT
*
9739430 TGTTTCTATAGAAACTAGACTCAGATAGGAATCT
196 TGTTTCTATAGAAACTAGACTCAGAGAGGAATCT
9739464 ATACATGTAT
Statistics
Matches: 227, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
231 227 1.00
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.33
Consensus pattern (231 bp):
AAATACAGTTCCGTGAATTTTCCCTGGAACTAGACTCATATACCTATATGGTAGAATTTTTTTAG
AATTTTTGGTCGGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCATGTTACAGGGATCGACT
ACACTGACCTTTGCGCATTACGACTTGGATATCTCCCTGCACAGAGCTTCAATACTGATATCGTT
TGTTTCTATAGAAACTAGACTCAGAGAGGAATCTGT
Found at i:9740703 original size:28 final size:27
Alignment explanation
Indices: 9740636--9740736 Score: 184
Period size: 27 Copynumber: 3.7 Consensus size: 27
9740626 ATTAAGTCCA
9740636 AACTCGCACACTTAGTGCTACATAGTC
1 AACTCGCACACTTAGTGCTACATAGTC
9740663 AACTCGCACACTTAGTGCTACATAGTC
1 AACTCGCACACTTAGTGCTACATAGTC
9740690 AAACTCGCACACTTAGTGCTACATAGTC
1 -AACTCGCACACTTAGTGCTACATAGTC
*
9740718 AATTCGCACACTTAGTGCT
1 AACTCGCACACTTAGTGCT
9740737 GCACAATTTA
Statistics
Matches: 72, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
27 45 0.62
28 27 0.38
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
AACTCGCACACTTAGTGCTACATAGTC
Found at i:9742945 original size:28 final size:28
Alignment explanation
Indices: 9742905--9742961 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
9742895 TCAATAGGTA
9742905 AGAAAAGAAAAGGAAATAGTAAGTATAC
1 AGAAAAGAAAAGGAAATAGTAAGTATAC
9742933 AGAAAAGAAAAGGAAATAGTAAGTATAC
1 AGAAAAGAAAAGGAAATAGTAAGTATAC
9742961 A
1 A
9742962 AATGAAACGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.61, C:0.04, G:0.21, T:0.14
Consensus pattern (28 bp):
AGAAAAGAAAAGGAAATAGTAAGTATAC
Found at i:9743003 original size:21 final size:21
Alignment explanation
Indices: 9742977--9743018 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
9742967 AACGGTTCAT
9742977 GATTATATGAAAATTTTGAGG
1 GATTATATGAAAATTTTGAGG
9742998 GATTATATGAAAATTTTGAGG
1 GATTATATGAAAATTTTGAGG
9743019 ATTTAAATGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.24, T:0.38
Consensus pattern (21 bp):
GATTATATGAAAATTTTGAGG
Found at i:9743028 original size:21 final size:21
Alignment explanation
Indices: 9742977--9743028 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
9742967 AACGGTTCAT
*
9742977 GATTATATGAAAATTTTGAGG
1 GATTAAATGAAAATTTTGAGG
*
9742998 GATTATATGAAAATTTTGA-G
1 GATTAAATGAAAATTTTGAGG
9743018 GATTTAAATGA
1 GA-TTAAATGA
9743029 TGTATATGTG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 3 0.10
21 26 0.90
ACGTcount: A:0.40, C:0.00, G:0.21, T:0.38
Consensus pattern (21 bp):
GATTAAATGAAAATTTTGAGG
Found at i:9748569 original size:13 final size:13
Alignment explanation
Indices: 9748551--9748575 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9748541 TCTGTCATTT
9748551 CAAATTTTAATTA
1 CAAATTTTAATTA
9748564 CAAATTTTAATT
1 CAAATTTTAATT
9748576 TTTTCAAGGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (13 bp):
CAAATTTTAATTA
Found at i:9756374 original size:43 final size:43
Alignment explanation
Indices: 9756284--9756393 Score: 116
Period size: 43 Copynumber: 2.6 Consensus size: 43
9756274 TACCGAGATG
* * * * * *
9756284 TGATTACATGTAAGACCTTATCTGGGACATTGGCATTGTATTG
1 TGATTACGTGTAAGACCATGTCTGAGACATTGGCATCGTATTA
9756327 TGATTACGTGTAAGACCATGTCTGAGACATTGGCATCGT-TATA
1 TGATTACGTGTAAGACCATGTCTGAGACATTGGCATCGTAT-TA
* *
9756370 TGATTTCGTATAAGA-CACTGTCTG
1 TGATTACGTGTAAGACCA-TGTCTG
9756394 GGATAGTGGC
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
42 3 0.05
43 54 0.95
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.35
Consensus pattern (43 bp):
TGATTACGTGTAAGACCATGTCTGAGACATTGGCATCGTATTA
Found at i:9766920 original size:40 final size:40
Alignment explanation
Indices: 9766849--9767035 Score: 236
Period size: 40 Copynumber: 4.7 Consensus size: 40
9766839 TTCTAACATG
* * * *
9766849 AGCCTACGGGTCTTT-AACCCGGATTCCATTCCAGCACGA-
1 AGCCTGCGGGTCTTTAAACCCAGATACAATTCCAGCA-GAT
* *
9766888 AGCCTGCGGGTCTTTAAACCCAGATACAATTCCATCATAT
1 AGCCTGCGGGTCTTTAAACCCAGATACAATTCCAGCAGAT
*
9766928 AGCCTGCGGGTCTTTAAACCCAGATACAATTCCAGCATAT
1 AGCCTGCGGGTCTTTAAACCCAGATACAATTCCAGCAGAT
* * *
9766968 AGCCTGTGGGTCTTTAAACCCGGATACCATTCCAGCACGA-
1 AGCCTGCGGGTCTTTAAACCCAGATACAATTCCAGCA-GAT
*
9767008 AGCCTGCGGGTCTTTAAGCCCAGATACA
1 AGCCTGCGGGTCTTTAAACCCAGATACA
9767036 CACATCAAAT
Statistics
Matches: 130, Mismatches: 15, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 15 0.12
40 114 0.88
41 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (40 bp):
AGCCTGCGGGTCTTTAAACCCAGATACAATTCCAGCAGAT
Found at i:9777828 original size:20 final size:21
Alignment explanation
Indices: 9777795--9777852 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 21
9777785 ATAAATTATG
* * *
9777795 TACCACTCCCTTTACTTTC-T
1 TACCATTCCATTTACTTACTT
9777815 TACCATTCCATTTACTTACTT
1 TACCATTCCATTTACTTACTT
*
9777836 TA-CATTTCATTTACTTA
1 TACCATTCCATTTACTTA
9777853 ACATAAACTT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
20 30 0.91
21 3 0.09
ACGTcount: A:0.22, C:0.29, G:0.00, T:0.48
Consensus pattern (21 bp):
TACCATTCCATTTACTTACTT
Found at i:9794483 original size:22 final size:23
Alignment explanation
Indices: 9794458--9794501 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
9794448 TAATATTTTT
9794458 AATTTTAATTAATTTT-ATAATA
1 AATTTTAATTAATTTTGATAATA
*
9794480 AATTTTTATTAATTTTGATAAT
1 AATTTTAATTAATTTTGATAAT
9794502 TTTCGATAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (23 bp):
AATTTTAATTAATTTTGATAATA
Found at i:9803496 original size:46 final size:46
Alignment explanation
Indices: 9803439--9803647 Score: 188
Period size: 46 Copynumber: 4.4 Consensus size: 46
9803429 TGTGCTAGTA
*
9803439 TAAGACATGTCTGGGACATGCATCAACCATAATATGAGAGCCAGTG
1 TAAGACATGTCTGGGACATGCATCAACCTTAATATGAGAGCCAGTG
* *
9803485 TAAGACCTGTCTGGGACATGCATCAGA-CTTGAGATATTTA-AGCCAGTG
1 TAAGACATGTCTGGGACATGCATCA-ACCTT-A-ATA-TGAGAGCCAGTG
* * * * * *
9803533 TAAGACATGTCTGGGACATGCATTAGCGTTGAGATGAGAGCTAGTG
1 TAAGACATGTCTGGGACATGCATCAACCTTAATATGAGAGCCAGTG
* ** * ** * *
9803579 TAACACATGTCTGGGACATGCATCGGCCTCACGATGGACAAGCTAGTG
1 TAAGACATGTCTGGGACATGCATCAACCTTAATAT-GA-GAGCCAGTG
9803627 TAAGACCATGTCTGGGACATG
1 TAAGA-CATGTCTGGGACATG
9803648 GGGTCGGCAT
Statistics
Matches: 134, Mismatches: 20, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
45 2 0.01
46 63 0.47
47 4 0.03
48 48 0.36
49 17 0.13
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (46 bp):
TAAGACATGTCTGGGACATGCATCAACCTTAATATGAGAGCCAGTG
Found at i:9803627 original size:94 final size:94
Alignment explanation
Indices: 9803432--9803647 Score: 245
Period size: 94 Copynumber: 2.3 Consensus size: 94
9803422 TGATATGTGT
* * * *
9803432 GCTAGTATAAGACATGTCTGGGACATGCATCAACCATAATATGAGAGCCAGTGTAAGACCTGTCT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAACCATAAGATGAGAGCCAGTGTAACACATGTCT
* * ***
9803497 GGGACATGCATCAGACTTGAGATATTTAA
66 GGGACATGCATCAGACCTCAGATAGACAA
* * * ** * *
9803526 GCCAGTGTAAGACATGTCTGGGACATGCATTAGCGTTGAGATGAGAGCTAGTGTAACACATGTCT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAACCATAAGATGAGAGCCAGTGTAACACATGTCT
* *
9803591 GGGACATGCATC-GGCCTCACGATGGACAA
66 GGGACATGCATCAGACCTCA-GATAGACAA
9803620 GCTAGTGTAAGACCATGTCTGGGACATG
1 GCTAGTGTAAGA-CATGTCTGGGACATG
9803648 GGGTCGGCAT
Statistics
Matches: 101, Mismatches: 19, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
93 4 0.04
94 82 0.81
95 15 0.15
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAACCATAAGATGAGAGCCAGTGTAACACATGTCT
GGGACATGCATCAGACCTCAGATAGACAA
Found at i:9804823 original size:21 final size:20
Alignment explanation
Indices: 9804799--9804838 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
9804789 GTCTTAGTGA
*
9804799 TCACACGGGCGTGTTGCCCTT
1 TCACACAGGCGTG-TGCCCTT
9804820 TCACACAGGCGTGTGCCCT
1 TCACACAGGCGTGTGCCCT
9804839 ATTTCAAAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.12, C:0.35, G:0.28, T:0.25
Consensus pattern (20 bp):
TCACACAGGCGTGTGCCCTT
Found at i:9805760 original size:26 final size:26
Alignment explanation
Indices: 9805724--9805777 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
9805714 AATATTTAGC
9805724 TTTGCTAGAAGCTAATCAAAAAGGAT
1 TTTGCTAGAAGCTAATCAAAAAGGAT
*
9805750 TTTGCTAGAAGCTAATCAAAAGGGAT
1 TTTGCTAGAAGCTAATCAAAAAGGAT
9805776 TT
1 TT
9805778 AAACCGCAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.39, C:0.11, G:0.20, T:0.30
Consensus pattern (26 bp):
TTTGCTAGAAGCTAATCAAAAAGGAT
Found at i:9809184 original size:16 final size:15
Alignment explanation
Indices: 9809156--9809190 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
9809146 TAATAACTAG
*
9809156 TTATAATTATATTTA
1 TTATAATTATATTAA
9809171 TTATAATATATATTAA
1 TTATAAT-TATATTAA
9809187 TTAT
1 TTAT
9809191 TATCAACTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
TTATAATTATATTAA
Found at i:9810853 original size:3 final size:3
Alignment explanation
Indices: 9810845--9810882 Score: 58
Period size: 3 Copynumber: 12.7 Consensus size: 3
9810835 CGAGGATCTC
* *
9810845 GAA GAA GAA GAA GAA GAA GAA AAA GAA AAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
9810883 TCCCATAGAG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:9813767 original size:20 final size:22
Alignment explanation
Indices: 9813730--9813770 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
9813720 TCATTTCAGT
9813730 ATATATAAGTCACATTTAATTA
1 ATATATAAGTCACATTTAATTA
*
9813752 ATAT-TAAGT-ACGTTTAATT
1 ATATATAAGTCACATTTAATT
9813771 GCTTATAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 5 0.28
22 4 0.22
ACGTcount: A:0.41, C:0.07, G:0.07, T:0.44
Consensus pattern (22 bp):
ATATATAAGTCACATTTAATTA
Done.