Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 271 of 284
Found at i:90994208 original size:27 final size:27
Alignment explanation
Indices: 90994087--90994283 Score: 175
Period size: 27 Copynumber: 7.3 Consensus size: 27
90994077 AGGGTAAAAC
* * * * *
90994087 GGTAATTCTATAAATTAAGGGTACTTT
1 GGTAATTTTACAAATCAGGGGTATTTT
* * *
90994114 GGTAATTTTACAAGTC-GATGGTATTTC
1 GGTAATTTTACAAATCAG-GGGTATTTT
** ** *
90994141 AATAATTTTACAGGTC-GAGGGTATTTC
1 GGTAATTTTACAAATCAG-GGGTATTTT
* *
90994168 AGTAATTTCACAAATCAGGGGTATTTT
1 GGTAATTTTACAAATCAGGGGTATTTT
90994195 GGTAATTTTACAAA-CTAGGGGTATTTT
1 GGTAATTTTACAAATC-AGGGGTATTTT
* * *
90994222 GATAATTTTACAAACCAGGAGTATTTT
1 GGTAATTTTACAAATCAGGGGTATTTT
*
90994249 GGTAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTACAAATCAGGGGTATTTT
90994276 GGTAATTT
1 GGTAATTT
90994284 GGTAAACTAA
Statistics
Matches: 143, Mismatches: 23, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
26 1 0.01
27 140 0.98
28 2 0.01
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
GGTAATTTTACAAATCAGGGGTATTTT
Found at i:90994218 original size:81 final size:81
Alignment explanation
Indices: 90994105--90994283 Score: 209
Period size: 81 Copynumber: 2.2 Consensus size: 81
90994095 TATAAATTAA
* * * * ** *
90994105 GGGTACTTTGGTAATTTTACAAGTCGATGGTATTTCAATAATTTTACAGGTCGAGG-GTATTTCA
1 GGGTATTTTGGTAATTTTACAACTAGAGGGTATTTCAATAATTTTACA-AACCAGGAGTATTTCA
*
90994169 GTAATTTCACAAATCAG
65 GTAATTTCACAAACCAG
** **
90994186 GGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGATAATTTTACAAACCAGGAGTATTTTG
1 GGGTATTTTGGTAATTTTAC-AACTAGAGGGTATTTCAATAATTTTACAAACCAGGAGTATTTCA
*
90994250 GTAATTTTACAAACCAG
65 GTAATTTCACAAACCAG
90994267 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
90994284 GGTAAACTAA
Statistics
Matches: 83, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
80 4 0.05
81 75 0.90
82 4 0.05
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAACTAGAGGGTATTTCAATAATTTTACAAACCAGGAGTATTTCAG
TAATTTCACAAACCAG
Found at i:90994290 original size:27 final size:27
Alignment explanation
Indices: 90994159--90994283 Score: 187
Period size: 27 Copynumber: 4.6 Consensus size: 27
90994149 TACAGGTCGA
** * *
90994159 GGGTATTTCAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
90994186 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
90994213 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
90994240 GAGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
90994267 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
90994284 GGTAAACTAA
Statistics
Matches: 88, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 88 1.00
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:91006403 original size:42 final size:42
Alignment explanation
Indices: 91006270--91006433 Score: 113
Period size: 42 Copynumber: 3.9 Consensus size: 42
91006260 CGGGAATTAC
* * * * * *
91006270 ATATCATACCAATGCCATATCCCAAATATGGTCTTACAT-AGG
1 ATATCATATCGATGCCATGTCCCAGACATGGTCTTACATGA-A
* *
91006312 ATCTCATATCGATGCCAATAG-CCTAG-CTATGGTCTTACATG-A
1 ATATCATATCGATGCC-AT-GTCCCAGAC-ATGGTCTTACATGAA
* * *
91006354 TTGTCATATCGATGCCATGTCCCAGACATGGTCCTACATGAA
1 ATATCATATCGATGCCATGTCCCAGACATGGTCTTACATGAA
* * * *
91006396 ATATCATAAT-GATACCATATCCTAGATATGGTCTTACA
1 ATATCAT-ATCGATGCCATGTCCCAGACATGGTCTTACA
91006434 CGTAAACTCA
Statistics
Matches: 95, Mismatches: 19, Indels: 16
0.73 0.15 0.12
Matches are distributed among these distances:
40 1 0.01
41 18 0.19
42 57 0.60
43 19 0.20
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (42 bp):
ATATCATATCGATGCCATGTCCCAGACATGGTCTTACATGAA
Found at i:91015191 original size:19 final size:19
Alignment explanation
Indices: 91015136--91015192 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 19
91015126 GTTCTATTTA
*
91015136 TAAATATATAATC-TGTTT
1 TAAATATATTATCATGTTT
91015154 T-AATATATGCTGAATCATGTTT
1 TAAATATAT--T--ATCATGTTT
91015176 TAAATATATTATCATGT
1 TAAATATATTATCATGT
91015193 GAACGATATG
Statistics
Matches: 32, Mismatches: 1, Indels: 11
0.73 0.02 0.25
Matches are distributed among these distances:
17 7 0.22
18 1 0.03
19 7 0.22
21 4 0.12
22 6 0.19
23 7 0.22
ACGTcount: A:0.37, C:0.07, G:0.09, T:0.47
Consensus pattern (19 bp):
TAAATATATTATCATGTTT
Found at i:91028157 original size:55 final size:54
Alignment explanation
Indices: 91028044--91028160 Score: 128
Period size: 55 Copynumber: 2.1 Consensus size: 54
91028034 CTACAATTGT
* * * *
91028044 AAGTCAGGTTCGAGCACGACCAAGGCACACAGGCATGTGTTTAGCCGTGTGGCCC
1 AAGTCAGATTCGACCACGACCAAGGCACACAGGCATGTCTTTAGCCATGTGG-CC
* * * *
91028099 AAGTCAGATTCGACCACGGCCAAGGCACACGGGCTTGTCTTGTGGCCATGTGAG-C
1 AAGTCAGATTCGACCACGACCAAGGCACACAGGCATGTCTT-TAGCCATGTG-GCC
91028154 AAGTCAG
1 AAGTCAG
91028161 TAGGTATGCC
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
55 43 0.83
56 8 0.15
57 1 0.02
ACGTcount: A:0.24, C:0.26, G:0.31, T:0.19
Consensus pattern (54 bp):
AAGTCAGATTCGACCACGACCAAGGCACACAGGCATGTCTTTAGCCATGTGGCC
Found at i:91041078 original size:42 final size:43
Alignment explanation
Indices: 91040942--91041092 Score: 141
Period size: 42 Copynumber: 3.5 Consensus size: 43
91040932 AATGAGTTAT
* * *
91040942 CGTGTAAGACCGTGTCTGGGACACAGGCCTCGAT-TTGAGATTTA
1 CGTGTAAGACCATGTCTGGGACACAGGCATCGATACTGA-A-TTA
* *
91040986 CGTGTAAGACCATTTCTGGGACATCA-GCATCG-TATCTG-ATTT
1 CGTGTAAGACCATGTCTGGGACA-CAGGCATCGATA-CTGAATTA
* *
91041028 CGTGTAAGACCCTGTCTGGGACAGAGGCATCGATACTGAATTA
1 CGTGTAAGACCATGTCTGGGACACAGGCATCGATACTGAATTA
* * *
91041071 CAT-TAAGACCACGTCTAGGACA
1 CGTGTAAGACCATGTCTGGGACA
91041093 TCGGCTTTGT
Statistics
Matches: 88, Mismatches: 13, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
41 1 0.01
42 48 0.55
43 9 0.10
44 26 0.30
45 4 0.05
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.26
Consensus pattern (43 bp):
CGTGTAAGACCATGTCTGGGACACAGGCATCGATACTGAATTA
Found at i:91044331 original size:19 final size:19
Alignment explanation
Indices: 91044276--91044332 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 19
91044266 GTTCTATTTA
*
91044276 TAAATATATAATC-TGTTT
1 TAAATATATTATCATGTTT
*
91044294 TAATATATGTTGAATCATGTTT
1 TAA-ATATATT--ATCATGTTT
91044316 TAAATATATTATCATGT
1 TAAATATATTATCATGT
91044333 GAACGATATG
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
18 3 0.09
19 12 0.38
21 9 0.28
22 8 0.25
ACGTcount: A:0.37, C:0.05, G:0.09, T:0.49
Consensus pattern (19 bp):
TAAATATATTATCATGTTT
Found at i:91047734 original size:37 final size:37
Alignment explanation
Indices: 91047684--91047763 Score: 99
Period size: 37 Copynumber: 2.2 Consensus size: 37
91047674 CTTATTACGA
* * *
91047684 AGTCTTACCCGGACATAA-TCTCCACACGAAGTTATCG
1 AGTCTTACACGGACAAAATTC-CCACACGAAGTCATCG
*
91047721 AGTCTTACACGGACAAAATTCCCACACGCAGTCATCG
1 AGTCTTACACGGACAAAATTCCCACACGAAGTCATCG
*
91047758 GGTCTT
1 AGTCTT
91047764 TAGAGTCCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (37 bp):
AGTCTTACACGGACAAAATTCCCACACGAAGTCATCG
Found at i:91047957 original size:47 final size:47
Alignment explanation
Indices: 91047894--91048144 Score: 328
Period size: 47 Copynumber: 5.4 Consensus size: 47
91047884 TATCACATTT
* * *
91047894 ATACAC-T-TTCACATTCATCACATCGGCCATTAGGCCCTATCTCAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCAC
* * *
91047939 ATACACATGCTCACATTCATCACATTGGCCACTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCAC
* * *
91047986 ATACACCTGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCAC
*
91048033 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCAT
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCAC
** * *
91048080 ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCCTATTCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTA-TCTCAC
*
91048128 ATATACACT-TTCACATT
1 ATACACA-TGTTCACATT
91048145 TATTCAATTA
Statistics
Matches: 182, Mismatches: 20, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
45 6 0.03
46 1 0.01
47 156 0.86
48 18 0.10
49 1 0.01
ACGTcount: A:0.26, C:0.33, G:0.10, T:0.31
Consensus pattern (47 bp):
ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCAC
Found at i:91048183 original size:141 final size:140
Alignment explanation
Indices: 91047894--91048175 Score: 326
Period size: 141 Copynumber: 2.0 Consensus size: 140
91047884 TATCACATTT
91047894 ATACAC-T-TTCACATTCATCACATCGGCCATTAGGCCCTATCTCACATACACATGCTCACATTC
1 ATACACATGTTCACATTCATCACATCGGCCATTAGGCCCTATCTCACATACACATGCTCACATTC
* * *
91047957 ATCACATTGGCCACTCGGCCTTATCACACATACACCTGTTCACTTTCATCACATTGGCCATTCGG
66 ATCACATTGGCCACTCGGCCCTATCACACATACACCTGTTCACTTTCATCACATTAGACATTC-G
* * *
91048022 CCTTATCACAC
130 ACATACCACAC
* * * * ** *
91048033 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTC
1 ATACACATGTTCACATTCATCACATCGGCCATTAGGCCCTATCTCACATACACATGCTCACATTC
* *
91048098 ATCACATTGGCCATTCGGCCCTATTCACACATATACACT-TTCACATTT-ATTCA-ATTAGAC-T
66 ATCACATTGGCCACTCGGCCCTA-TCACACATACAC-CTGTTCAC-TTTCA-TCACATTAGACAT
*
91048159 TC-ACATACCACAT
127 TCGACATACCACAC
91048172 ATAC
1 ATAC
91048176 CATCATGTAC
Statistics
Matches: 121, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
139 17 0.14
140 1 0.01
141 73 0.60
142 22 0.18
143 8 0.07
ACGTcount: A:0.28, C:0.32, G:0.09, T:0.31
Consensus pattern (140 bp):
ATACACATGTTCACATTCATCACATCGGCCATTAGGCCCTATCTCACATACACATGCTCACATTC
ATCACATTGGCCACTCGGCCCTATCACACATACACCTGTTCACTTTCATCACATTAGACATTCGA
CATACCACAC
Found at i:91053259 original size:9 final size:9
Alignment explanation
Indices: 91053227--91053265 Score: 53
Period size: 9 Copynumber: 4.2 Consensus size: 9
91053217 ATTATTTTAT
91053227 TTAAAAATTA
1 TTAAAAA-TA
91053237 TATAAAAATA
1 T-TAAAAATA
91053247 -TAAAAATA
1 TTAAAAATA
91053255 TTAAAAATA
1 TTAAAAATA
91053264 TT
1 TT
91053266 CTTAAAATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
8 8 0.30
9 10 0.37
10 3 0.11
11 6 0.22
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (9 bp):
TTAAAAATA
Found at i:91053261 original size:17 final size:19
Alignment explanation
Indices: 91053228--91053264 Score: 60
Period size: 17 Copynumber: 2.1 Consensus size: 19
91053218 TTATTTTATT
91053228 TAAAAATTATATAAAAATA
1 TAAAAATTATATAAAAATA
91053247 TAAAAA-TAT-TAAAAATA
1 TAAAAATTATATAAAAATA
91053264 T
1 T
91053265 TCTTAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 9 0.50
18 3 0.17
19 6 0.33
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (19 bp):
TAAAAATTATATAAAAATA
Found at i:91060595 original size:50 final size:47
Alignment explanation
Indices: 91060476--91060650 Score: 166
Period size: 49 Copynumber: 3.7 Consensus size: 47
91060466 TCCATTAAGT
* *
91060476 CGATGCCATGTCCCAGACCTGGTCTTACACTGACTATCGA-A-ATCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTG-CT-TC-ACATATCG-TGC
* *
91060525 CGACGCCATATCCCAGACATGGTCTTACACTAGCTCTCACATATTCGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACT-GCT-TCACATA-TCGTGC
* *
91060575 CGATGCCATGTCCCAAACATGGTCTT--ACT-CTTACACATCTCGTAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGCTT-CACATATCGT-GC
91060621 CGATG-CATGTCCCAGACAT-GTCTTACACTG
1 CGATGCCATGTCCCAGACATGGTCTTACACTG
91060651 GCTTTGTAAC
Statistics
Matches: 107, Mismatches: 10, Indels: 20
0.78 0.07 0.15
Matches are distributed among these distances:
44 5 0.05
45 18 0.17
46 17 0.16
48 4 0.04
49 33 0.31
50 27 0.25
51 3 0.03
ACGTcount: A:0.24, C:0.32, G:0.18, T:0.26
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGCTTCACATATCGTGC
Found at i:91062454 original size:13 final size:13
Alignment explanation
Indices: 91062436--91062460 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
91062426 TAATGGTATA
91062436 TTGAATCCATGAT
1 TTGAATCCATGAT
91062449 TTGAATCCATGA
1 TTGAATCCATGA
91062461 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:91064794 original size:37 final size:37
Alignment explanation
Indices: 91064738--91064816 Score: 131
Period size: 37 Copynumber: 2.1 Consensus size: 37
91064728 CCGAGCTCTA
* *
91064738 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
91064775 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
91064812 AAGAC
1 AAGAC
91064817 TTCGTAATAA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:91065924 original size:47 final size:46
Alignment explanation
Indices: 91065825--91065941 Score: 114
Period size: 47 Copynumber: 2.5 Consensus size: 46
91065815 TGTGCTGATG
* * * *
91065825 CCATGTCCCAGACACGGTCTTACACTGGCTTACATCTCAAGTCGAA
1 CCATGTCCCAGACATGGTCTTACACTGACTTACATCTCAAGCCCAA
*
91065871 GCCATGTCCCAGACATGGTCTTACACTGAC-TATCATCTCGTAGCCC-A
1 -CCATGTCCCAGACATGGTCTTACACTGACTTA-CATCTC-AAGCCCAA
* *
91065918 CACATGTCCTAGATAT-GTCTTACA
1 C-CATGTCCCAGACATGGTCTTACA
91065942 TTGGCTTAAG
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
46 11 0.18
47 46 0.77
48 3 0.05
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (46 bp):
CCATGTCCCAGACATGGTCTTACACTGACTTACATCTCAAGCCCAA
Found at i:91066001 original size:46 final size:48
Alignment explanation
Indices: 91065951--91066040 Score: 121
Period size: 48 Copynumber: 1.9 Consensus size: 48
91065941 ATTGGCTTAA
* * *
91065951 GTCTCGAGGCCGATG-CATGTCGCAAACAT-GTCTTACACTAGCACTC
1 GTCTCAAGACCGATGCCATGTCCCAAACATAGTCTTACACTAGCACTC
* *
91065997 GTCTCAATACCGATGCCATGTCCCAGACATAGTCTTACACTAGC
1 GTCTCAAGACCGATGCCATGTCCCAAACATAGTCTTACACTAGC
91066041 TCACACAAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
46 12 0.32
47 12 0.32
48 13 0.35
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (48 bp):
GTCTCAAGACCGATGCCATGTCCCAAACATAGTCTTACACTAGCACTC
Found at i:91069952 original size:189 final size:189
Alignment explanation
Indices: 91069632--91070014 Score: 748
Period size: 189 Copynumber: 2.0 Consensus size: 189
91069622 TGAAAAGCAA
91069632 TCTTCGGTACATCTTGCTCTTTGACTCTCAACTGATAATAACCAGACCTCAAGTCTATCTTGAAG
1 TCTTCGGTACATCTTGCTCTTTGACTCTCAACTGATAATAACCAGACCTCAAGTCTATCTTGAAG
91069697 AATACCGTGGCTCACTTTAACTGGTCGAATAAATCATCTATCCTTGGCAAAGGATACTTGTTCTT
66 AATACCGTGGCTCACTTTAACTGGTCGAATAAATCATCTATCCTTGGCAAAGGATACTTGTTCTT
91069762 CACTATTACCTTATTGAGCTGTCTATAGTCGACACATAACCTCATTGACCCATCTTTCT
131 CACTATTACCTTATTGAGCTGTCTATAGTCGACACATAACCTCATTGACCCATCTTTCT
91069821 TCTTCGGTACATCTTGCTCTTTGACTCTCAACTGATAATAACCAGACCTCAAGTCTATCTTGAAG
1 TCTTCGGTACATCTTGCTCTTTGACTCTCAACTGATAATAACCAGACCTCAAGTCTATCTTGAAG
*
91069886 AATACCGTGGCTCAGTTTAACTGGTCGAATAAATCATCTATCCTTGGCAAAGGATACTTGTTCTT
66 AATACCGTGGCTCACTTTAACTGGTCGAATAAATCATCTATCCTTGGCAAAGGATACTTGTTCTT
*
91069951 CACTATTACCTTATTGAGCTGTCTATAGTCGACACATAATCTCATTGACCCATCTTTCT
131 CACTATTACCTTATTGAGCTGTCTATAGTCGACACATAACCTCATTGACCCATCTTTCT
91070010 TCTTC
1 TCTTC
91070015 ACAAAAAGTA
Statistics
Matches: 192, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
189 192 1.00
ACGTcount: A:0.26, C:0.25, G:0.14, T:0.35
Consensus pattern (189 bp):
TCTTCGGTACATCTTGCTCTTTGACTCTCAACTGATAATAACCAGACCTCAAGTCTATCTTGAAG
AATACCGTGGCTCACTTTAACTGGTCGAATAAATCATCTATCCTTGGCAAAGGATACTTGTTCTT
CACTATTACCTTATTGAGCTGTCTATAGTCGACACATAACCTCATTGACCCATCTTTCT
Found at i:91073184 original size:12 final size:12
Alignment explanation
Indices: 91073167--91073192 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
91073157 AAAATAGGGC
91073167 TTTAGCGGCGTT
1 TTTAGCGGCGTT
91073179 TTTAGCGGCGTT
1 TTTAGCGGCGTT
91073191 TT
1 TT
91073193 ATCAAAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTAGCGGCGTT
Found at i:91073300 original size:41 final size:40
Alignment explanation
Indices: 91073247--91073465 Score: 285
Period size: 41 Copynumber: 5.4 Consensus size: 40
91073237 CGTTTTACCA
* * * * *
91073247 AAAATGCCGCTAAAAACAGAGCAATAGAGGCGTTTTTTGTT
1 AAAACGCCGCTAAAAACAGAGCATTAGCGGCG-CTTTTGGT
* * *
91073288 AAAACGCTGCTAAAAATAGAGCATTAGCGGCACTTTTGGT
1 AAAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTTTGGT
91073328 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAA-CAGAGCATTAGCGGCGCTTTTGGT
* *
91073369 AAAACGCCGCTAAAAACCAGAGCATTAGTGGCGTTTTTGGT
1 AAAACGCCGCTAAAAA-CAGAGCATTAGCGGCGCTTTTGGT
* * *
91073410 AAAACGCCGCTAAAAACTAGAGCAGTAGCGGCGCTTTCGAT
1 AAAACGCCGCTAAAAAC-AGAGCATTAGCGGCGCTTTTGGT
91073451 AAAACGCCGCTAAAA
1 AAAACGCCGCTAAAA
91073466 GTCATATAAT
Statistics
Matches: 158, Mismatches: 18, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
40 22 0.14
41 136 0.86
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (40 bp):
AAAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTTTGGT
Found at i:91073993 original size:7 final size:7
Alignment explanation
Indices: 91073983--91074026 Score: 61
Period size: 7 Copynumber: 6.3 Consensus size: 7
91073973 GGTTTAAGAT
*
91073983 TTAGGTG
1 TTAGGGG
91073990 TTAGGGG
1 TTAGGGG
91073997 TTAGGGG
1 TTAGGGG
91074004 TTAGGGG
1 TTAGGGG
*
91074011 TTAAGGG
1 TTAGGGG
*
91074018 TGAGGGG
1 TTAGGGG
91074025 TT
1 TT
91074027 CATGGTTCAG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.16, C:0.00, G:0.52, T:0.32
Consensus pattern (7 bp):
TTAGGGG
Found at i:91074196 original size:7 final size:7
Alignment explanation
Indices: 91074184--91074209 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
91074174 TATCATTATA
91074184 GTTTAGG
1 GTTTAGG
91074191 GTTTAGG
1 GTTTAGG
91074198 GTTTAGG
1 GTTTAGG
91074205 GTTTA
1 GTTTA
91074210 AAGTGTATGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.00, G:0.38, T:0.46
Consensus pattern (7 bp):
GTTTAGG
Found at i:91074251 original size:15 final size:15
Alignment explanation
Indices: 91074233--91074275 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
91074223 ATTATTTTAA
91074233 GGTTTATGGATTATG
1 GGTTTATGGATTATG
*
91074248 GGTTTAGGGATTAT-
1 GGTTTATGGATTATG
*
91074262 GATTTATGG-TTATG
1 GGTTTATGGATTATG
91074276 TAAGAGATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
13 4 0.17
14 7 0.29
15 13 0.54
ACGTcount: A:0.21, C:0.00, G:0.33, T:0.47
Consensus pattern (15 bp):
GGTTTATGGATTATG
Found at i:91074253 original size:22 final size:22
Alignment explanation
Indices: 91074228--91074270 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
91074218 GAGTTATTAT
*
91074228 TTTAAGGTTTATGGA-TTATGGG
1 TTTAAGGATTAT-GATTTATGGG
*
91074250 TTTAGGGATTATGATTTATGG
1 TTTAAGGATTATGATTTATGG
91074271 TTATGTAAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.11
22 16 0.89
ACGTcount: A:0.23, C:0.00, G:0.30, T:0.47
Consensus pattern (22 bp):
TTTAAGGATTATGATTTATGGG
Found at i:91074894 original size:6 final size:7
Alignment explanation
Indices: 91074878--91074910 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
91074868 TTAAAATTTT
*
91074878 AAAATTA
1 AAAAATA
91074885 AAAAATA
1 AAAAATA
91074892 AAAAATA
1 AAAAATA
91074899 AAAAATA
1 AAAAATA
91074906 AAAAA
1 AAAAA
91074911 CTTAAAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (7 bp):
AAAAATA
Found at i:91076799 original size:138 final size:138
Alignment explanation
Indices: 91076551--91076822 Score: 447
Period size: 138 Copynumber: 2.0 Consensus size: 138
91076541 TAATAATGTA
* * *
91076551 TGGATGCTTTGTGGAGTCCCTATTTTGAATTTTAGAATCATATGTAATCTCTTTAAAAATTGGCA
1 TGGATGCTTTGTGGAGTACCTATTTTGAATTTTAGAACCATATGTAATCTCCTTAAAAATTGGCA
*
91076616 TTAAATTGTTTTTAGGTTTTATAATAACATTTCTCTTTGTTATGTTATTACGCAACTTATTTGAT
66 TTAAATTGTTTTTAGGTTTTATAATAACATTTCTATTTGTTATGTTATTACGCAACTTATTTGAT
91076681 TTAACGTC
131 TTAACGTC
* * *
91076689 TGGATGCTTT-TAGGAGTACTTGTTTTGAATTTTAGAACCATATGTAATTTCCTTAAAAATTGGC
1 TGGATGCTTTGT-GGAGTACCTATTTTGAATTTTAGAACCATATGTAATCTCCTTAAAAATTGGC
* *
91076753 ATTAAATTGTTTTTAGGTTTTATATTAACATTTCTATTTGTTATGTTATTATGCAACTTATTTGA
65 ATTAAATTGTTTTTAGGTTTTATAATAACATTTCTATTTGTTATGTTATTACGCAACTTATTTGA
91076818 TTTAA
130 TTTAA
91076823 AATTTTAAAA
Statistics
Matches: 124, Mismatches: 9, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
137 1 0.01
138 123 0.99
ACGTcount: A:0.28, C:0.10, G:0.14, T:0.48
Consensus pattern (138 bp):
TGGATGCTTTGTGGAGTACCTATTTTGAATTTTAGAACCATATGTAATCTCCTTAAAAATTGGCA
TTAAATTGTTTTTAGGTTTTATAATAACATTTCTATTTGTTATGTTATTACGCAACTTATTTGAT
TTAACGTC
Found at i:91077929 original size:43 final size:43
Alignment explanation
Indices: 91077863--91078092 Score: 338
Period size: 43 Copynumber: 5.4 Consensus size: 43
91077853 AAATTTCATT
* ***
91077863 ACCTTTAGCGGCGTTTGTGGGAAAA-CTGCCGCTAAAGGTAAAG
1 ACCTCTAGCGGCGTTTGTGGGAAAAGC-GCCGCTAAAGGTCTTG
**
91077906 ACCTCTAGCGGCGTTTGTGGGAAAAGCGCCGCTGGAGGTCTTG
1 ACCTCTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTG
91077949 ACCTCTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTG
1 ACCTCTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTG
* *
91077992 ACCTCTAACGGCGTTTGTGGG-AAAGCGTCGCTAAAGGTCTTG
1 ACCTCTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTG
* *
91078034 ACCTCTAGCGGTGTTTGTGGGAAAAGCGCCGCTAAAGGTCGTG
1 ACCTCTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTG
*
91078077 ACCTTTAGCGGCGTTT
1 ACCTCTAGCGGCGTTT
91078093 TTTAAATAAA
Statistics
Matches: 169, Mismatches: 16, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
42 39 0.23
43 129 0.76
44 1 0.01
ACGTcount: A:0.21, C:0.22, G:0.33, T:0.25
Consensus pattern (43 bp):
ACCTCTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTG
Found at i:91078059 original size:85 final size:86
Alignment explanation
Indices: 91077863--91078092 Score: 338
Period size: 85 Copynumber: 2.7 Consensus size: 86
91077853 AAATTTCATT
* * *
91077863 ACCTTTAGCGGCGTTTGTGGGAAAA-CTGCCGCTAAAGGTAAAGACCTCTAGCGGCGTTTGTGGG
1 ACCTCTAGCGGCGTTTGTGGGAAAAGC-GCCGCTAAAGGTCATGACCTCTAGCGGCGTTTGTGGG
**
91077927 AAAAGCGCCGCTGGAGGTCTTG
65 AAAAGCGCCGCTAAAGGTCTTG
* *
91077949 ACCTCTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGACCTCTAACGGCGTTTGTGGG-
1 ACCTCTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGACCTCTAGCGGCGTTTGTGGGA
*
91078013 AAAGCGTCGCTAAAGGTCTTG
66 AAAGCGCCGCTAAAGGTCTTG
* * *
91078034 ACCTCTAGCGGTGTTTGTGGGAAAAGCGCCGCTAAAGGTCGTGACCTTTAGCGGCGTTT
1 ACCTCTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGACCTCTAGCGGCGTTT
91078093 TTTAAATAAA
Statistics
Matches: 131, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
85 73 0.56
86 57 0.44
87 1 0.01
ACGTcount: A:0.21, C:0.22, G:0.33, T:0.25
Consensus pattern (86 bp):
ACCTCTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGACCTCTAGCGGCGTTTGTGGGA
AAAGCGCCGCTAAAGGTCTTG
Found at i:91080939 original size:27 final size:27
Alignment explanation
Indices: 91080905--91081116 Score: 214
Period size: 27 Copynumber: 7.9 Consensus size: 27
91080895 CATACATCAC
* *
91080905 ATAAGGGCATATCAGTCATCTTACCAT
1 ATAAGGGCAAATCAGTCATTTTACCAT
91080932 ATAAGGGCAAA-CAGTCATTTTACC-T
1 ATAAGGGCAAATCAGTCATTTTACCAT
* * *
91080957 CATAAGGGGAAATCAGCCATTTTACCAC
1 -ATAAGGGCAAATCAGTCATTTTACCAT
* *
91080985 ATAAAGGCAAAAT-AGTCATTTTACCAC
1 ATAAGGGC-AAATCAGTCATTTTACCAT
* *
91081012 ATAAGGGAAAATCAGTCATTTTACCTT
1 ATAAGGGCAAATCAGTCATTTTACCAT
* * * *
91081039 ATAAGGGTAAAACAGTCATTTTGCCAC
1 ATAAGGGCAAATCAGTCATTTTACCAT
* * * *
91081066 ATATGGGCAAAACTGTCATTTTACCAC
1 ATAAGGGCAAATCAGTCATTTTACCAT
* *
91081093 ACATGGGCAAATCAGTCATTTTAC
1 ATAAGGGCAAATCAGTCATTTTAC
91081117 AGATTAGAGG
Statistics
Matches: 156, Mismatches: 24, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
25 1 0.01
26 26 0.17
27 125 0.80
28 4 0.03
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (27 bp):
ATAAGGGCAAATCAGTCATTTTACCAT
Found at i:91081017 original size:54 final size:53
Alignment explanation
Indices: 91080902--91081116 Score: 241
Period size: 54 Copynumber: 4.0 Consensus size: 53
91080892 AAACATACAT
* * *
91080902 CACATAAGGGCATATCAGTCATCTTACCATATAAGGGCAAACAGTCATTTTAC
1 CACATAAGGGCAAATCAGTCATTTTACCACATAAGGGCAAACAGTCATTTTAC
* * * * *
91080955 CTCATAAGGGGAAATCAGCCATTTTACCACATAAAGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAATCAGTCATTTTACCACATAAGGGC-AAACAGTCATTTTAC
* ** * *
91081009 CACATAAGGGAAAATCAGTCATTTTACCTTATAAGGGTAAAACAGTCATTTTGC
1 CACATAAGGGCAAATCAGTCATTTTACCACATAAGGG-CAAACAGTCATTTTAC
* * * * *
91081063 CACATATGGGCAAAACTGTCATTTTACCACACATGGGCAAATCAGTCATTTTAC
1 CACATAAGGGCAAATCAGTCATTTTACCACATAAGGGCAAA-CAGTCATTTTAC
91081117 AGATTAGAGG
Statistics
Matches: 132, Mismatches: 27, Indels: 5
0.80 0.16 0.03
Matches are distributed among these distances:
53 34 0.26
54 98 0.74
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.27
Consensus pattern (53 bp):
CACATAAGGGCAAATCAGTCATTTTACCACATAAGGGCAAACAGTCATTTTAC
Found at i:91081059 original size:81 final size:82
Alignment explanation
Indices: 91080918--91081116 Score: 269
Period size: 81 Copynumber: 2.5 Consensus size: 82
91080908 AGGGCATATC
* * *
91080918 AGTCATCTTACCATATAAGGGCAAA-CAGTCATTTTACCTCATAAGGGGAAATCAGCCATTTTAC
1 AGTCATTTTACCACATAAGGGCAAATCAGTCATTTTACCTCATAAGGGGAAAACAGCCATTTTAC
91080982 CACATAAAGGCAAAA-T
66 CACATAAAGGCAAAACT
* * * * *
91080998 AGTCATTTTACCACATAAGGGAAAATCAGTCATTTTACCTTATAAGGGTAAAACAGTCATTTTGC
1 AGTCATTTTACCACATAAGGGCAAATCAGTCATTTTACCTCATAAGGGGAAAACAGCCATTTTAC
**
91081063 CACATATGGGCAAAACT
66 CACATAAAGGCAAAACT
* *
91081080 -GTCATTTTACCACACATGGGCAAATCAGTCATTTTAC
1 AGTCATTTTACCACATAAGGGCAAATCAGTCATTTTAC
91081117 AGATTAGAGG
Statistics
Matches: 104, Mismatches: 13, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
80 22 0.21
81 81 0.78
82 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.28
Consensus pattern (82 bp):
AGTCATTTTACCACATAAGGGCAAATCAGTCATTTTACCTCATAAGGGGAAAACAGCCATTTTAC
CACATAAAGGCAAAACT
Found at i:91081265 original size:17 final size:18
Alignment explanation
Indices: 91081232--91081265 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
91081222 TATAATACGG
91081232 GCCCATGTGGTCCCACAC
1 GCCCATGTGGTCCCACAC
*
91081250 GCCCGTGTGG-CCCACA
1 GCCCATGTGGTCCCACA
91081266 AAACCTAGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.15, C:0.44, G:0.26, T:0.15
Consensus pattern (18 bp):
GCCCATGTGGTCCCACAC
Found at i:91085892 original size:22 final size:22
Alignment explanation
Indices: 91085867--91085908 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
91085857 ATATAAAATT
*
91085867 ATATTTAATAAATCATTTTAAA
1 ATATTTAATAAATAATTTTAAA
* *
91085889 ATATTTCATTAATAATTTTA
1 ATATTTAATAAATAATTTTA
91085909 GTTTTAAATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (22 bp):
ATATTTAATAAATAATTTTAAA
Found at i:91087954 original size:10 final size:9
Alignment explanation
Indices: 91087941--91087992 Score: 54
Period size: 9 Copynumber: 5.8 Consensus size: 9
91087931 ATTTTTTTGA
91087941 ATTTTTACAT
1 ATTTTTA-AT
91087951 A-TTTTAAT
1 ATTTTTAAT
*
91087959 -TTTATAAT
1 ATTTTTAAT
91087967 ATTTTTAAT
1 ATTTTTAAT
*
91087976 AATTTTATAT
1 ATTTTTA-AT
91087986 ATTTTTA
1 ATTTTTA
91087993 GTTTTTTTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
8 8 0.23
9 18 0.51
10 9 0.26
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (9 bp):
ATTTTTAAT
Found at i:91088003 original size:19 final size:19
Alignment explanation
Indices: 91087955--91087992 Score: 67
Period size: 19 Copynumber: 1.9 Consensus size: 19
91087945 TTACATATTT
91087955 TAATTTTATAATATTTTTAA
1 TAATTTTAT-ATATTTTTAA
91087975 TAATTTTATATATTTTTA
1 TAATTTTATATATTTTTA
91087993 GTTTTTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (19 bp):
TAATTTTATATATTTTTAA
Found at i:91090571 original size:47 final size:47
Alignment explanation
Indices: 91090493--91090754 Score: 371
Period size: 47 Copynumber: 5.6 Consensus size: 47
91090483 CCCTTCGGGA
* * * * * * *
91090493 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
91090540 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * * * *
91090587 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
91090634 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
91090681 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
91090728 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
91090755 TATTCAAATA
Statistics
Matches: 188, Mismatches: 27, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 188 1.00
ACGTcount: A:0.27, C:0.32, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:91090654 original size:94 final size:94
Alignment explanation
Indices: 91090493--91090754 Score: 443
Period size: 94 Copynumber: 2.8 Consensus size: 94
91090483 CCCTTCGGGA
*
91090493 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
91090558 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
91090587 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
91090652 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* * * * * * * *
91090681 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
91090746 TTTCACATT
66 TTTCACATT
91090755 TATTCAAATA
Statistics
Matches: 159, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
94 159 1.00
ACGTcount: A:0.27, C:0.32, G:0.10, T:0.32
Consensus pattern (94 bp):
CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:91090751 original size:141 final size:141
Alignment explanation
Indices: 91090497--91090753 Score: 424
Period size: 141 Copynumber: 1.8 Consensus size: 141
91090487 TCGGGACTTA
* * * * * *
91090497 TCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACACTTTC
1 TCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACTTTC
*
91090562 ACATTCATCACATCGGCCATTAGGCCTTATCACATTTATACACTTTCACATCCATCACGTTGGCC
66 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATCCATCACGTTGGCC
91090627 ACTCGGCCCTG
131 ACTCGGCCCTG
* * *
91090638 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
1 TCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACTTTC
91090703 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
66 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
91090754 TTATTCAAAT
Statistics
Matches: 106, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
141 106 1.00
ACGTcount: A:0.27, C:0.32, G:0.10, T:0.32
Consensus pattern (141 bp):
TCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACTTTC
ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATCCATCACGTTGGCC
ACTCGGCCCTG
Found at i:91094224 original size:39 final size:39
Alignment explanation
Indices: 91094144--91094272 Score: 156
Period size: 39 Copynumber: 3.4 Consensus size: 39
91094134 ATTCACTTTT
* ** * *
91094144 AAGCATATATCACATTACACATAT-A-TACATAACATTT
1 AAGCATATATCACAATAGTCATATAACCACATAACATTC
*
91094181 AAGCATATATCACAAT-GTGTATATAACCACATAACATTC
1 AAGCATATATCACAATAGT-CATATAACCACATAACATTC
*
91094220 AAGCATATATCACAATAGTCATATAATCACATAACATTC
1 AAGCATATATCACAATAGTCATATAACCACATAACATTC
*
91094259 AATCATATATCACA
1 AAGCATATATCACA
91094273 TTACTCAAAA
Statistics
Matches: 79, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
37 19 0.24
38 1 0.01
39 57 0.72
40 2 0.03
ACGTcount: A:0.46, C:0.20, G:0.05, T:0.29
Consensus pattern (39 bp):
AAGCATATATCACAATAGTCATATAACCACATAACATTC
Found at i:91094273 original size:22 final size:22
Alignment explanation
Indices: 91094208--91094273 Score: 70
Period size: 22 Copynumber: 3.2 Consensus size: 22
91094198 TGTATATAAC
*
91094208 CACATAACATTCAAGCATATAT
1 CACATAACATTCAATCATATAT
* *
91094230 CAC--AATAGTC-AT-ATA-AT
1 CACATAACATTCAATCATATAT
91094247 CACATAACATTCAATCATATAT
1 CACATAACATTCAATCATATAT
91094269 CACAT
1 CACAT
91094274 TACTCAAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 10
0.69 0.10 0.20
Matches are distributed among these distances:
17 5 0.15
18 3 0.09
19 6 0.18
20 7 0.21
21 3 0.09
22 10 0.29
ACGTcount: A:0.45, C:0.23, G:0.03, T:0.29
Consensus pattern (22 bp):
CACATAACATTCAATCATATAT
Found at i:91117661 original size:27 final size:27
Alignment explanation
Indices: 91117622--91117740 Score: 157
Period size: 27 Copynumber: 4.4 Consensus size: 27
91117612 TGGATAAGTT
91117622 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
91117649 ATAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
91117676 GTAAAAATACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * * *
91117703 GTAGAATTATCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
91117730 GTAAAATTACC
1 GTAGAATTACC
91117741 ATTTTTCACC
Statistics
Matches: 78, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 78 1.00
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.24
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:91117697 original size:54 final size:54
Alignment explanation
Indices: 91117629--91117740 Score: 179
Period size: 54 Copynumber: 2.1 Consensus size: 54
91117619 GTTGTAGAAT
91117629 TACCGAAATACCCCTGTAGGATAGAATTACCGAAATACCCTTGTAGGGTAAAAA
1 TACCGAAATACCCCTGTAGGATAGAATTACCGAAATACCCTTGTAGGGTAAAAA
* * * * *
91117683 TACCGAAATACCCCTGTAGGGTAGAATTATCGAGATACCCTTGTGGGGTAAAAT
1 TACCGAAATACCCCTGTAGGATAGAATTACCGAAATACCCTTGTAGGGTAAAAA
91117737 TACC
1 TACC
91117741 ATTTTTCACC
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.24
Consensus pattern (54 bp):
TACCGAAATACCCCTGTAGGATAGAATTACCGAAATACCCTTGTAGGGTAAAAA
Found at i:91118508 original size:32 final size:32
Alignment explanation
Indices: 91118460--91118522 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 32
91118450 CTCGTTGCAA
* *
91118460 TCTGGTGGCTTCGCCACAATATATATATCTGT
1 TCTGGTGGCCTAGCCACAATATATATATCTGT
* *
91118492 TCTGGTGGCCTAGCCACAATATCTGTATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
91118523 GTGACTTCGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.35
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:91118514 original size:72 final size:67
Alignment explanation
Indices: 91118374--91118516 Score: 171
Period size: 72 Copynumber: 2.1 Consensus size: 67
91118364 GAAGAAGCGT
* * *
91118374 TCTGGCAACCTCGCTGCAATCTGGTGGCCTTGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAACCTCGCTGCAATCTGGTGGCCTTGCCACATATATCTGTTCTGGTGACCTAGCCACAA
91118439 TA
66 TA
* * *
91118441 TCTGGCAGCCTCGTTGCAATCTGGTGG-CTTCGCCACAATATATATATCTGTTCTGGTGGCCTAG
1 TCTGGCAACCTCGCTGCAATCTGGTGGCCTT-GCCAC-----ATATATCTGTTCTGGTGACCTAG
91118505 CCACAATA
60 CCACAATA
91118513 TCTG
1 TCTG
91118517 TATCTGGTGA
Statistics
Matches: 64, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
66 3 0.05
67 30 0.47
72 31 0.48
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.31
Consensus pattern (67 bp):
TCTGGCAACCTCGCTGCAATCTGGTGGCCTTGCCACATATATCTGTTCTGGTGACCTAGCCACAA
TA
Found at i:91125217 original size:27 final size:27
Alignment explanation
Indices: 91125175--91125293 Score: 148
Period size: 27 Copynumber: 4.4 Consensus size: 27
91125165 TAGATAAGTT
*
91125175 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
* * * *
91125202 ATAGAATTACCAAAATACCTTTGTAAG
1 GTAGAATTACCGAAATACCCTTGTAGG
* *
91125229 GTAGAAATACCGAAATACCCATGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
* *
91125256 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCTTGTAGG
*
91125283 GTAAAATTACC
1 GTAGAATTACC
91125294 ATTTTGCCCT
Statistics
Matches: 76, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 76 1.00
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.24
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCTTGTAGG
Found at i:91126065 original size:26 final size:27
Alignment explanation
Indices: 91126036--91126095 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
91126026 CCACATATAT
*
91126036 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
91126062 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
91126089 ATATCTG
1 ATATCTG
91126096 GCAGCTTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:91139515 original size:22 final size:22
Alignment explanation
Indices: 91139490--91139533 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
91139480 ACAAGGCTAA
91139490 TTTGCCACCCCAACTTCAATGT
1 TTTGCCACCCCAACTTCAATGT
*
91139512 TTTGCCATCCCAACTTCAATGT
1 TTTGCCACCCCAACTTCAATGT
91139534 ACCTACACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.23, C:0.34, G:0.09, T:0.34
Consensus pattern (22 bp):
TTTGCCACCCCAACTTCAATGT
Found at i:91161135 original size:27 final size:27
Alignment explanation
Indices: 91161104--91161280 Score: 194
Period size: 27 Copynumber: 6.5 Consensus size: 27
91161094 TAAATTGTAC
*
91161104 AGCACTAAGTGTGTGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
91161131 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
91161157 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
91161185 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
91161213 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
91161240 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
91161267 AGCACTGAGTGTGC
1 AGCACTAAGTGTGC
91161281 AGACTCAGTA
Statistics
Matches: 127, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:91161218 original size:82 final size:81
Alignment explanation
Indices: 91161105--91161260 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
91161095 AAATTGTACA
* * *
91161105 GCACTAAGTGTGTGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
91161169 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
91161186 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
91161251 TGCGAGTTGA
65 TGCGAATTGA
91161261 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 14 0.21
82 51 0.77
83 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:91161272 original size:82 final size:81
Alignment explanation
Indices: 91161101--91161280 Score: 218
Period size: 82 Copynumber: 2.2 Consensus size: 81
91161091 GATTAAATTG
* * *
91161101 TACAGCACTAAGTGTGTGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
91161166 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
91161182 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
91161246 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
91161264 TATAGCACTGAGTGTGC
1 TACAGCACTAAGTGTGC
91161281 AGACTCAGTA
Statistics
Matches: 82, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 17 0.21
82 65 0.79
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:91162381 original size:43 final size:43
Alignment explanation
Indices: 91162320--91162403 Score: 141
Period size: 43 Copynumber: 2.0 Consensus size: 43
91162310 AGCTCTGTGC
* *
91162320 AGGGAGATATCCAGGTCGTAATGTGCAAAGGTCAGTGTAGTTT
1 AGGGAGATATCCAAGTCGTAATGGGCAAAGGTCAGTGTAGTTT
*
91162363 AGGGAGATATTCAAGTCGTAATGGGCAAAGGTCAGTGTAGT
1 AGGGAGATATCCAAGTCGTAATGGGCAAAGGTCAGTGTAGT
91162404 CGACTCCTGC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.30, C:0.11, G:0.33, T:0.26
Consensus pattern (43 bp):
AGGGAGATATCCAAGTCGTAATGGGCAAAGGTCAGTGTAGTTT
Found at i:91167241 original size:59 final size:59
Alignment explanation
Indices: 91167178--91167289 Score: 136
Period size: 59 Copynumber: 1.9 Consensus size: 59
91167168 ACTTAATCAA
* * * * *
91167178 ATAA-TTCTGTTTCAAGATTTATTCTCGTCATTTAACATAATTTATTTTGATTTACTTAC
1 ATAATTTC-GTTTCAAGATTTAATATCGTCATTTAACAAAATTGACTTTGATTTACTTAC
* * *
91167237 ATAATTTCGTTTCGAGTTTTAATATTGTCATTTAACAAAATTGACTTTGATTT
1 ATAATTTCGTTTCAAGATTTAATATCGTCATTTAACAAAATTGACTTTGATTT
91167290 TGTTTCAGAA
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
59 41 0.93
60 3 0.07
ACGTcount: A:0.29, C:0.12, G:0.09, T:0.50
Consensus pattern (59 bp):
ATAATTTCGTTTCAAGATTTAATATCGTCATTTAACAAAATTGACTTTGATTTACTTAC
Found at i:91168092 original size:475 final size:468
Alignment explanation
Indices: 91167075--91168526 Score: 1894
Period size: 475 Copynumber: 3.1 Consensus size: 468
91167065 ATGTTTGAAG
* * *
91167075 GACATTTATCGTAAATTAAATAAAATATGTTTCGGGATTTATTTTAGCCGTTTAATAAG-ATTTT
1 GACATTTATCTTAAATTAAATAAAATATGTTTCGGGATTTATTATAGCCGTTTAACAAGAATTTT
* * * * *
91167139 ATTCAATATTTACTTGTTTCCAAACAAAGACTTAATCAAATAATTCTGTTTCAAGATTTATTCTC
66 -TTCGATATTGATTTGTTTCCAAACGAAGACTTAATCAAATAATTCTGTTTCAGGATTTATTCTC
* * * * * * *
91167204 GTCATTTAACATAATTTATTTTGATTTACTTACATAATTTCGTTTCGAGTTTTAATATTGTCATT
130 GCCATTTAACAGAATTTATTTTGATTTAATTACATAATTTTGTTTCGAGATTTAATCTTGCCATT
* *
91167269 TAACAAAATTGACTTTGATTTTGTTTCAGAATTTTAACAAAATTCT-TCCGTTTAACAAAATCGA
195 TAACAAAATTGATTTTGATTTTGTTTCAGAATTTT-----AATTCTGT-CGTTTAACAAAATCAA
* * * * * * *
91167333 AGGGAGATTTTC-TGTTTATTTTTTTGTCTAAATATGGCTTGAAAGTGTGAATTAAAAAAAAAAT
254 AGGGAAATTTTCAT-TTTATTTTTTTGCCTAATTGTGGCTTGAAATTGTGAATTAAAAAGAAATT
* *
91167397 TATCAATGGTGAATTAAAAAGAAAATATGAGAATGCATGTCTAGCATTGGTTCTTTGAAAGACTT
318 TATCAATGGTGAATTAAAAAGACAATATGAGAATGCATGTCTAGAATTGGTTCTTTGAAAGACTT
* *
91167462 GGTATTTAAGCGTGCTTAGTGCACCACCTCATATTTCAG-CACACATGAAATTATTTTTCCTTAG
383 GGTATTTAAGCGTGCCTAGTGCACCACCTCATATTTCAGCCA-ACACGAAATTATTTTTCCTTAG
* *
91167526 TAGGCATAATCTATTTATATAA
447 CAGACATAATCTATTTATATAA
* * * *
91167548 GGACATTTATATTAAATTAAATAAAATATGTTTCGGGATTTATTATTGCCATTTAACAAGATTTT
1 -GACATTTATCTTAAATTAAATAAAATATGTTTCGGGATTTATTATAGCCGTTTAACAAGA-ATT
* * * *
91167613 TTTTCGATATTGATTTGTTTCTAAATGAAGGCTTAATCAAATAATTCTGTTTTAGGATTTATTCT
64 TTTTCGATATTGATTTGTTTCCAAACGAAGACTTAATCAAATAATTCTGTTTCAGGATTTATTCT
* * * * * *
91167678 CACCGTTTAACAGAATTTACTTTGATTTAATTACATAATTTTGTTTCAAGATTTAATCCTGCCGT
129 CGCCATTTAACAGAATTTATTTTGATTTAATTACATAATTTTGTTTCGAGATTTAATCTTGCCAT
* * *
91167743 TTAACAAAATTGTTTTTGATTTTGTTTTAGAATTTTAATTCTGTTGTTTAACAAAATCAAAGGGA
194 TTAACAAAATTGATTTTGATTTTGTTTCAGAATTTTAATTCTGTCGTTTAACAAAATCAAAGGGA
*
91167808 AATTTTCTATTTTTTTTATTTTTTTGCCTAATTGTGGCTTGAAATTGTTAATTAAAAAGAAATTT
259 AATTTTC-A----TTTTATTTTTTTGCCTAATTGTGGCTTGAAATTGTGAATTAAAAAGAAATTT
* ** * *
91167873 ATTAACAGTGAATTAAAAGGACAATATGAGAATGCATGTCTAAAATTGGTTCTTTGAAAGACTTG
319 ATCAATGGTGAATTAAAAAGACAATATGAGAATGCATGTCTAGAATTGGTTCTTTGAAAGACTTG
91167938 GTATTTAAGCGTGCCTAGTGCACCACCTCATATTTCAGTCCAACACGAAATTATTTTTCCTTAGC
384 GTATTTAAGCGTGCCTAGTGCACCACCTCATATTTCAG-CCAACACGAAATTATTTTTCCTTAGC
* *
91168003 AGACATAATTTATTTAAATAA
448 AGACATAATCTATTTATATAA
* * ***
91168024 TGACATTTATCTTAAATTAAATAAAATCTATTTCGGGATTTATTGCCGCCGTTTAACAAGAATTT
1 -GACATTTATCTTAAATTAAATAAAATATGTTTCGGGATTTATTATAGCCGTTTAACAAGAATTT
* * * *
91168089 TTTCGATATTGATTTGTTTCGAAACGAAGACTTAATCAAATAATTATATTTCAGAATTTATTC-C
65 TTTCGATATTGATTTGTTTCCAAACGAAGACTTAATCAAATAATTCTGTTTCAGGATTTATTCTC
*
91168153 GGCCATTTAATAGAATTTATTTTGATTTAATTACATAATTTTGTTTCGAGATTTAATCTTGCCAT
130 -GCCATTTAACAGAATTTATTTTGATTTAATTACATAATTTTGTTTCGAGATTTAATCTTGCCAT
* *
91168218 TTAACAAAATTGATTTTGATTTTGTTTCAGAATTTTAATTCTGCCGTTTAACAAAATCAAA-GGT
194 TTAACAAAATTGATTTTGATTTTGTTTCAGAATTTTAATTCTGTCGTTTAACAAAATCAAAGGGA
*
91168282 AA-----A---T-TTTTTTT-CCTAATTGTGGCTTGAAATTGTGAATTAAAAAGAAATTTATCAG
259 AATTTTCATTTTATTTTTTTGCCTAATTGTGGCTTGAAATTGTGAATTAAAAAGAAATTTATCAA
* * *
91168337 TGGTGAATTAAAAAGACATTATGAGAATGCATGTCTAGGATTGGTTCTTTGAAAGACTTGTTATT
324 TGGTGAATTAAAAAGACAATATGAGAATGCATGTCTAGAATTGGTTCTTTGAAAGACTTGGTATT
*
91168402 TAAGCGTG-CTGAGTGCACCACCTCATATTTCAGCCTAACACGAAATTATTTTTCCTTAGCAAAC
389 TAAGCGTGCCT-AGTGCACCACCTCATATTTCAGCC-AACACGAAATTATTTTTCCTTAGCAGAC
*
91168466 ATAGTCTATTTATATAA
452 ATAATCTATTTATATAA
* * **
91168483 GAACATTTATTTTAAATTAAATAAAATCTGTTTTAGGATTTATT
1 G-ACATTTATCTTAAATTAAATAAAATATGTTTCGGGATTTATT
91168527 CTCATCGTTT
Statistics
Matches: 862, Mismatches: 101, Indels: 45
0.86 0.10 0.04
Matches are distributed among these distances:
458 5 0.01
459 208 0.24
460 7 0.01
461 1 0.00
468 1 0.00
470 31 0.04
471 1 0.00
474 58 0.07
475 451 0.52
476 97 0.11
477 2 0.00
ACGTcount: A:0.33, C:0.12, G:0.13, T:0.41
Consensus pattern (468 bp):
GACATTTATCTTAAATTAAATAAAATATGTTTCGGGATTTATTATAGCCGTTTAACAAGAATTTT
TTCGATATTGATTTGTTTCCAAACGAAGACTTAATCAAATAATTCTGTTTCAGGATTTATTCTCG
CCATTTAACAGAATTTATTTTGATTTAATTACATAATTTTGTTTCGAGATTTAATCTTGCCATTT
AACAAAATTGATTTTGATTTTGTTTCAGAATTTTAATTCTGTCGTTTAACAAAATCAAAGGGAAA
TTTTCATTTTATTTTTTTGCCTAATTGTGGCTTGAAATTGTGAATTAAAAAGAAATTTATCAATG
GTGAATTAAAAAGACAATATGAGAATGCATGTCTAGAATTGGTTCTTTGAAAGACTTGGTATTTA
AGCGTGCCTAGTGCACCACCTCATATTTCAGCCAACACGAAATTATTTTTCCTTAGCAGACATAA
TCTATTTATATAA
Found at i:91175156 original size:28 final size:28
Alignment explanation
Indices: 91175095--91175156 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
91175085 TCAGTGTACG
** *
91175095 AAATATTCAGAATGGCACTTAGCGTGCG
1 AAATATTCAGAATAACACTTAGCGTGCA
* * *
91175123 AGATATTGAGAATAACACTTAGTGTGCA
1 AAATATTCAGAATAACACTTAGCGTGCA
91175151 AAATAT
1 AAATAT
91175157 CGAATGATTC
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.39, C:0.13, G:0.21, T:0.27
Consensus pattern (28 bp):
AAATATTCAGAATAACACTTAGCGTGCA
Found at i:91182121 original size:42 final size:43
Alignment explanation
Indices: 91182051--91182181 Score: 124
Period size: 44 Copynumber: 3.0 Consensus size: 43
91182041 TATTACATGT
* * *
91182051 AATCAAATATTGATGCCACTATCGCAGACAGGGTCTTACAC-AA
1 AATCAAATA-TGATGCCAATGTCCCAGACAGGGTCTTACACGAA
* * *
91182094 AATCAAATATGATGCTAATGTCCCAGACATGGTCTTACACGTA
1 AATCAAATATGATGCCAATGTCCCAGACAGGGTCTTACACGAA
* * *
91182137 AATCATAAGT-TGATTCCAACGTCCCAGAC-GTGGTCTTACATGAA
1 AATCA-AA-TATGATGCCAATGTCCCAGACAG-GGTCTTACACGAA
91182181 A
1 A
91182182 TCACATTTCG
Statistics
Matches: 72, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
42 26 0.36
43 15 0.21
44 30 0.42
45 1 0.01
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (43 bp):
AATCAAATATGATGCCAATGTCCCAGACAGGGTCTTACACGAA
Found at i:91186080 original size:30 final size:30
Alignment explanation
Indices: 91186041--91186099 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
91186031 GGAGGTGGGA
*
91186041 TGGGAAGGGAGTAAAAGTTTTAGGAGGAAAG
1 TGGGAAGGGAGTAAAAATTTTAGG-GGAAAG
*
91186072 TGGG-AGGGAGTAAAAATTTTTGGGGAAA
1 TGGGAAGGGAGTAAAAATTTTAGGGGAAA
91186100 ATAAAAAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 5 0.19
30 17 0.65
31 4 0.15
ACGTcount: A:0.37, C:0.00, G:0.41, T:0.22
Consensus pattern (30 bp):
TGGGAAGGGAGTAAAAATTTTAGGGGAAAG
Found at i:91186264 original size:30 final size:31
Alignment explanation
Indices: 91186203--91186264 Score: 72
Period size: 30 Copynumber: 2.0 Consensus size: 31
91186193 GGGGTTAGGC
* * **
91186203 TGGGAGGGAAGTAAAAGTTTTGGGGGGAAAG
1 TGGGAAGGAAGTAAAAGTTTTGAGGAAAAAG
*
91186234 TGGGAAGG-AGTAAAAGTTTTTAGGAAAAAG
1 TGGGAAGGAAGTAAAAGTTTTGAGGAAAAAG
91186264 T
1 T
91186265 AAAAAAGTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
30 19 0.73
31 7 0.27
ACGTcount: A:0.37, C:0.00, G:0.40, T:0.23
Consensus pattern (31 bp):
TGGGAAGGAAGTAAAAGTTTTGAGGAAAAAG
Found at i:91186376 original size:9 final size:9
Alignment explanation
Indices: 91186362--91186394 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
91186352 ATTTGAGTTG
91186362 ACTCGAATA
1 ACTCGAATA
*
91186371 ACTCGATTA
1 ACTCGAATA
91186380 ACTCGAATA
1 ACTCGAATA
91186389 ACTCGA
1 ACTCGA
91186395 TTTGTTTAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.39, C:0.24, G:0.12, T:0.24
Consensus pattern (9 bp):
ACTCGAATA
Found at i:91186385 original size:18 final size:18
Alignment explanation
Indices: 91186362--91186396 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
91186352 ATTTGAGTTG
91186362 ACTCGAATAACTCGATTA
1 ACTCGAATAACTCGATTA
91186380 ACTCGAATAACTCGATT
1 ACTCGAATAACTCGATT
91186397 TGTTTAACTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.37, C:0.23, G:0.11, T:0.29
Consensus pattern (18 bp):
ACTCGAATAACTCGATTA
Found at i:91200864 original size:79 final size:80
Alignment explanation
Indices: 91200733--91200880 Score: 219
Period size: 79 Copynumber: 1.9 Consensus size: 80
91200723 TATTCGGATG
* *
91200733 ATAACCGGGATAAGTAACGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAG-CCCGAAGGCA
1 ATAACCGGGATAAGTAACGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGTCCCGAAGGCA
91200797 TTTGTGCGAGTTACT
66 TTTGTGCGAGTTACT
* ** *
91200812 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGATAAGTAACGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAGTCCCGAAGGC
91200876 ATTTG
65 ATTTG
91200881 AGTAAGTAGC
Statistics
Matches: 61, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
78 2 0.03
79 45 0.74
80 14 0.23
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (80 bp):
ATAACCGGGATAAGTAACGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGTCCCGAAGGCA
TTTGTGCGAGTTACT
Found at i:91200902 original size:79 final size:79
Alignment explanation
Indices: 91200750--91200913 Score: 199
Period size: 79 Copynumber: 2.1 Consensus size: 79
91200740 GGATAAGTAA
* * * *
91200750 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATA
1 CGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCATTTGAGCAAGTTACTATA
*
91200815 ACCGGGCTAAGTCC
66 ACCGGGCTAAATCC
* *
91200829 CGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGCATTTGAGTAAG-TAGCT
1 CGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTTA-CT
* *
91200892 ATATCC-GGCTAAATTC
63 ATAACCGGGCTAAATCC
91200908 CGAAGG
1 CGAAGG
91200914 TACTTGGTTT
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 24 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCATTTGAGCAAGTTACTATA
ACCGGGCTAAATCC
Found at i:91200913 original size:39 final size:40
Alignment explanation
Indices: 91200733--91200880 Score: 219
Period size: 40 Copynumber: 3.7 Consensus size: 40
91200723 TATTCGGATG
* ** * *
91200733 ATAACCGGGATAAGTAACGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
91200773 A-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
91200812 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
91200852 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
91200881 AGTAAGTAGC
Statistics
Matches: 98, Mismatches: 7, Indels: 6
0.88 0.06 0.05
Matches are distributed among these distances:
39 33 0.34
40 65 0.66
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:91204032 original size:27 final size:27
Alignment explanation
Indices: 91204002--91204084 Score: 130
Period size: 27 Copynumber: 3.1 Consensus size: 27
91203992 AGCATGGCTG
*
91204002 CCAGAATAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATATTTGTGGCAGAGCCA
*
91204029 CCAGAACAGATATTTGTGGCAGAACCA
1 CCAGAACAGATATTTGTGGCAGAGCCA
* *
91204056 CCAGAACAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATTTGTGGCAGAGCCA
91204083 CC
1 CC
91204085 TGGACGCTTC
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.19
Consensus pattern (27 bp):
CCAGAACAGATATTTGTGGCAGAGCCA
Found at i:91206930 original size:40 final size:40
Alignment explanation
Indices: 91206849--91207024 Score: 257
Period size: 40 Copynumber: 4.4 Consensus size: 40
91206839 CAACCAAGTA
* * *
91206849 CCTTCGGGATTTAG-CCGGACATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
91206888 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
91206928 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
91206968 CCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
91207008 CCGTCGGGGCTTAGCCC
1 CCTTCGGGACTTAGCCC
91207025 AGTTATCATC
Statistics
Matches: 125, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 14 0.11
40 111 0.89
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:91214888 original size:40 final size:40
Alignment explanation
Indices: 91214802--91214979 Score: 252
Period size: 40 Copynumber: 4.5 Consensus size: 40
91214792 CAACCAAGTA
* * * *
91214802 CCTTCGGGATTTAG-CCGGACATAGCT-ACTCACTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
91214841 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
91214881 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
91214921 CCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
91214961 CCGTCGGGGCTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
91214980 TTATCATCCG
Statistics
Matches: 125, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 14 0.11
40 111 0.89
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:91223002 original size:27 final size:27
Alignment explanation
Indices: 91222954--91223041 Score: 113
Period size: 27 Copynumber: 3.2 Consensus size: 27
91222944 GTGATATAGT
*
91222954 CACCAGATATAGATATTTGTGGCAGAGC
1 CACCAGA-ACAGATATTTGTGGCAGAGC
* *
91222982 CACCAGAACATATATTTGTGGCAGAAC
1 CACCAGAACAGATATTTGTGGCAGAGC
* * *
91223009 CACCAGAACAGATAATTATGGCATAGC
1 CACCAGAACAGATATTTGTGGCAGAGC
91223036 CACCAG
1 CACCAG
91223042 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
27 45 0.87
28 7 0.13
ACGTcount: A:0.36, C:0.23, G:0.20, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGAGC
Found at i:91224320 original size:23 final size:25
Alignment explanation
Indices: 91224280--91224325 Score: 60
Period size: 23 Copynumber: 1.9 Consensus size: 25
91224270 GCAAAGAAGA
* *
91224280 AGAAAAGAGAATAGGAGATGAGAGG
1 AGAAAAGAGAATAAGAGAAGAGAGG
91224305 AGAAAAGA-AA-AAGAGAAGAGA
1 AGAAAAGAGAATAAGAGAAGAGA
91224326 ATGGTCAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 9 0.47
24 2 0.11
25 8 0.42
ACGTcount: A:0.61, C:0.00, G:0.35, T:0.04
Consensus pattern (25 bp):
AGAAAAGAGAATAAGAGAAGAGAGG
Found at i:91229159 original size:45 final size:44
Alignment explanation
Indices: 91229076--91229248 Score: 251
Period size: 45 Copynumber: 3.9 Consensus size: 44
91229066 CTGAATTCAT
* * *
91229076 TCACTGGCATT-TCGCCTGCTAGGCTC-GAGGCCCGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGG-CCGAATAATATC
* *
91229119 TCATCGGCATTATAGCCTACTAGGCTCAAAGGACCGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGG-CCGAATAATATC
91229164 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGTCCGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGG-CCGAATAATATC
91229209 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCGCGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGC-CGAATA
91229249 GTACTGTACA
Statistics
Matches: 118, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
43 9 0.08
44 14 0.12
45 95 0.81
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (44 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCGAATAATATC
Found at i:91245083 original size:17 final size:17
Alignment explanation
Indices: 91245038--91245086 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 17
91245028 TTTTATTGTT
* *
91245038 TATCATTTGTCGGGCAT
1 TATCATTTATCGGGCAC
* *
91245055 TATAATTGATCGGGCAC
1 TATCATTTATCGGGCAC
*
91245072 TCTCATTTATCGGGC
1 TATCATTTATCGGGC
91245087 TTTAACGAGT
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.37
Consensus pattern (17 bp):
TATCATTTATCGGGCAC
Found at i:91255579 original size:81 final size:81
Alignment explanation
Indices: 91255442--91255635 Score: 200
Period size: 81 Copynumber: 2.4 Consensus size: 81
91255432 GGTCGTTAAG
* * *
91255442 ACCCTCGACTTGTAAAATTACTAAAATTCCCCTAAGTTGTAAAATTACCAAAATACC-CCTAATT
1 ACCCTCAACTTGTAAAATTACTAAAATACCCCTAAGTTGTAAAATTACCAAAATACCATC-AATT
91255506 TGTGAAA-TTACCGAAAT
65 TGT-AAATTTACCGAAAT
* * * * * * *
91255523 ACCCTCAATTTGTGAAATTACTGAAATA-CCCTCAATTTGTGAAATTACTAAAATACCATCAGTT
1 ACCCTCAACTTGTAAAATTACTAAAATACCCCT-AAGTTGTAAAATTACCAAAATACCATCAATT
91255587 TGTAAATTTACCGAAAT
65 TGTAAATTTACCGAAAT
** *
91255604 ACCCTTTAC-TATAAAATTAC-AGAAATACCCCT
1 ACCCTCAACTTGTAAAATTACTA-AAATACCCCT
91255636 GTAGGGTAAA
Statistics
Matches: 92, Mismatches: 16, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
80 21 0.23
81 70 0.76
82 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.31
Consensus pattern (81 bp):
ACCCTCAACTTGTAAAATTACTAAAATACCCCTAAGTTGTAAAATTACCAAAATACCATCAATTT
GTAAATTTACCGAAAT
Found at i:91255597 original size:27 final size:27
Alignment explanation
Indices: 91255442--91255608 Score: 160
Period size: 27 Copynumber: 6.2 Consensus size: 27
91255432 GGTCGTTAAG
* * * *
91255442 ACCCTCGACTTGTAAAATTACTAAAAT
1 ACCCTCAATTTGTGAAATTACTGAAAT
* * * **
91255469 TCCC-CTAAGTTGTAAAATTACCAAAAT
1 ACCCTC-AATTTGTGAAATTACTGAAAT
*
91255496 ACCC-CTAATTTGTGAAATTACCGAAAT
1 ACCCTC-AATTTGTGAAATTACTGAAAT
91255523 ACCCTCAATTTGTGAAATTACTGAAAT
1 ACCCTCAATTTGTGAAATTACTGAAAT
*
91255550 ACCCTCAATTTGTGAAATTACTAAAAT
1 ACCCTCAATTTGTGAAATTACTGAAAT
* * *
91255577 ACCATCAGTTTGT-AAATTTACCGAAAT
1 ACCCTCAATTTGTGAAA-TTACTGAAAT
91255604 ACCCT
1 ACCCT
91255609 TTACTATAAA
Statistics
Matches: 122, Mismatches: 15, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
26 4 0.03
27 117 0.96
28 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.31
Consensus pattern (27 bp):
ACCCTCAATTTGTGAAATTACTGAAAT
Found at i:91257266 original size:27 final size:27
Alignment explanation
Indices: 91257236--91257307 Score: 65
Period size: 27 Copynumber: 2.7 Consensus size: 27
91257226 AGCATAGCTG
91257236 CCAGGAATAGTAAATGTGGCAAAGCAA
1 CCAGGAATAGTAAATGTGGCAAAGCAA
* * * * *
91257263 CCA-GTATCAATAATTGTGGCATAGCCA
1 CCAGGAAT-AGTAAATGTGGCAAAGCAA
* *
91257290 CCAGTAATAGTGAATGTG
1 CCAGGAATAGTAAATGTG
91257308 ACATAGTCAC
Statistics
Matches: 33, Mismatches: 10, Indels: 4
0.70 0.21 0.09
Matches are distributed among these distances:
26 3 0.09
27 28 0.85
28 2 0.06
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.22
Consensus pattern (27 bp):
CCAGGAATAGTAAATGTGGCAAAGCAA
Found at i:91257496 original size:27 final size:27
Alignment explanation
Indices: 91257463--91257580 Score: 139
Period size: 27 Copynumber: 4.4 Consensus size: 27
91257453 GGGTATAATC
*
91257463 GTCATTTTACCATAGAGGGGTATTACG
1 GTCATTTTACCATATAGGGGTATTACG
* * *
91257490 GTTATTTTACCCTATAGGGGTATTATG
1 GTCATTTTACCATATAGGGGTATTACG
* *
91257517 GTCATTTTA-CATTACAGGGGCATTACG
1 GTCATTTTACCA-TATAGGGGTATTACG
* *
91257544 GTCATTTTACCCTATAGGGGTATTATG
1 GTCATTTTACCATATAGGGGTATTACG
*
91257571 ATCATTTTAC
1 GTCATTTTAC
91257581 AAACTAGGGA
Statistics
Matches: 75, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
26 1 0.01
27 73 0.97
28 1 0.01
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.39
Consensus pattern (27 bp):
GTCATTTTACCATATAGGGGTATTACG
Found at i:91257536 original size:54 final size:53
Alignment explanation
Indices: 91257453--91257581 Score: 186
Period size: 54 Copynumber: 2.4 Consensus size: 53
91257443 CGAAACATAA
* * * * *
91257453 GGGTATAATCGTCATTTTACCATAGAGGGGTATTACGGTTATTTTACCCTATAG
1 GGGTATTATGGTCATTTTA-CATACAGGGGCATTACGGTCATTTTACCCTATAG
91257507 GGGTATTATGGTCATTTTACATTACAGGGGCATTACGGTCATTTTACCCTATAG
1 GGGTATTATGGTCATTTTACA-TACAGGGGCATTACGGTCATTTTACCCTATAG
*
91257561 GGGTATTATGATCATTTTACA
1 GGGTATTATGGTCATTTTACA
91257582 AACTAGGGAT
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
53 2 0.03
54 66 0.97
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.38
Consensus pattern (53 bp):
GGGTATTATGGTCATTTTACATACAGGGGCATTACGGTCATTTTACCCTATAG
Found at i:91257588 original size:27 final size:27
Alignment explanation
Indices: 91257453--91257594 Score: 112
Period size: 27 Copynumber: 5.3 Consensus size: 27
91257443 CGAAACATAA
* * *
91257453 GGGTATAATCGTCATTTTACCATA-GAG
1 GGGTATTATGGTCATTTTA-CATACTAG
* * *
91257480 GGGTATTACGGTTATTTTACCCTA-TAG
1 GGGTATTATGGTCATTTTA-CATACTAG
91257507 GGGTATTATGGTCATTTTACATTAC-AG
1 GGGTATTATGGTCATTTTACA-TACTAG
* * *
91257534 GGGCATTACGGTCATTTTACCCTA-TAG
1 GGGTATTATGGTCATTTTA-CATACTAG
* *
91257561 GGGTATTATGATCATTTTACAAACTAG
1 GGGTATTATGGTCATTTTACATACTAG
*
91257588 GGATATT
1 GGGTATT
91257595 TCAGTAATTT
Statistics
Matches: 92, Mismatches: 18, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
26 3 0.03
27 88 0.96
28 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.22, T:0.37
Consensus pattern (27 bp):
GGGTATTATGGTCATTTTACATACTAG
Found at i:91257605 original size:54 final size:54
Alignment explanation
Indices: 91257484--91257607 Score: 151
Period size: 54 Copynumber: 2.3 Consensus size: 54
91257474 ATAGAGGGGT
* * * * *
91257484 ATTACGGTTATTTTACCCTATAGGGGTATTATGGTCATTTTACATTACAGGGGC
1 ATTACAGTAATTTTACCCTATAGGGGTATTATGATCATTTTACATAACAGGGAC
* * *
91257538 ATTACGGTCATTTTACCCTATAGGGGTATTATGATCATTTTACA-AACTAGGGAT
1 ATTACAGTAATTTTACCCTATAGGGGTATTATGATCATTTTACATAAC-AGGGAC
*
91257592 ATTTCAGTAATTTTAC
1 ATTACAGTAATTTTAC
91257608 AAATCGAGGT
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
53 2 0.03
54 59 0.97
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.40
Consensus pattern (54 bp):
ATTACAGTAATTTTACCCTATAGGGGTATTATGATCATTTTACATAACAGGGAC
Found at i:91262837 original size:40 final size:40
Alignment explanation
Indices: 91262788--91262879 Score: 130
Period size: 40 Copynumber: 2.3 Consensus size: 40
91262778 CTCAATATCG
* * **
91262788 CACACTTAGTGCCTCAGATAGCCGAAGCTATTTTGAATTT
1 CACACTTAGTGCCTCAAATAGCCGAAGCTATATTGAATCA
*
91262828 CACACTTAGTGCCTCAAATAGCCGAAGCTGTATTGAATCA
1 CACACTTAGTGCCTCAAATAGCCGAAGCTATATTGAATCA
*
91262868 CAGACTTAGTGC
1 CACACTTAGTGC
91262880 AAAATACCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 46 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.28
Consensus pattern (40 bp):
CACACTTAGTGCCTCAAATAGCCGAAGCTATATTGAATCA
Found at i:91267161 original size:40 final size:40
Alignment explanation
Indices: 91267087--91267304 Score: 332
Period size: 40 Copynumber: 5.5 Consensus size: 40
91267077 AACCCAAGTA
* * *
91267087 CCTTCGGGATTTAG-CCGGATATAG-CGACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-AATAGCACAAATG
* *
91267126 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
91267166 CCTTCAGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
91267206 CCTTCGGGACTTAGCCCGGATGTAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
91267246 CCTTCGGGACTTAGCCAGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
91267286 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
91267305 TTATCATTCG
Statistics
Matches: 162, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 12 0.07
40 149 0.92
41 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.24, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:91269033 original size:29 final size:29
Alignment explanation
Indices: 91268970--91269037 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
91268960 TAATCAACCA
91268970 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
91268999 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
91269028 CGCACACTTA
1 CGCACACTTA
91269038 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:91269152 original size:174 final size:174
Alignment explanation
Indices: 91268859--91269186 Score: 602
Period size: 174 Copynumber: 1.9 Consensus size: 174
91268849 AACTCAAGGT
* *
91268859 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
91268924 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACACACACTTAGTGCCATGC
91268989 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
91269033 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
91269098 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACACACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACACACACTTAGTGCCATGC
*
91269163 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
91269187 TGTACAATTT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACACACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:91269180 original size:29 final size:30
Alignment explanation
Indices: 91269146--91269217 Score: 105
Period size: 29 Copynumber: 2.5 Consensus size: 30
91269136 ATCAACCACA
*
91269146 CACACTTAGTGCCATGTAC-TTTAAACTCG
1 CACACTTAGTGCCATGTACATTTAAACCCG
91269175 CACACTTAGTG-C-TGTACAATTTAAACCCG
1 CACACTTAGTGCCATGTAC-ATTTAAACCCG
91269204 CACACTTAGTGCCA
1 CACACTTAGTGCCA
91269218 ATCTCATGAC
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
27 5 0.13
28 1 0.03
29 31 0.82
30 1 0.03
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (30 bp):
CACACTTAGTGCCATGTACATTTAAACCCG
Found at i:91271408 original size:64 final size:64
Alignment explanation
Indices: 91271307--91271434 Score: 247
Period size: 64 Copynumber: 2.0 Consensus size: 64
91271297 CAAACAGCAT
*
91271307 CACTAAGAACTCGTAGTGACTGTACCTCGTTCTGAAAGCAGTTTTGGGTATGTCCGAATCTCGA
1 CACTAAGAACTCGTAGTGACTGTACCTCGTTCTGAAAGCAGTTTTGGGTACGTCCGAATCTCGA
91271371 CACTAAGAACTCGTAGTGACTGTACCTCGTTCTGAAAGCAGTTTTGGGTACGTCCGAATCTCGA
1 CACTAAGAACTCGTAGTGACTGTACCTCGTTCTGAAAGCAGTTTTGGGTACGTCCGAATCTCGA
91271435 ATCCGCAACT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 63 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (64 bp):
CACTAAGAACTCGTAGTGACTGTACCTCGTTCTGAAAGCAGTTTTGGGTACGTCCGAATCTCGA
Found at i:91272489 original size:73 final size:73
Alignment explanation
Indices: 91272370--91272514 Score: 245
Period size: 73 Copynumber: 2.0 Consensus size: 73
91272360 CGCAAATGGC
* * *
91272370 ATATGCTCTAGCAGGAGTACGGTTCTCGGCTCGAACAGCTGTATCAGAGGTCCCTCTCTGACTAC
1 ATATGCTCTAGCAGGAGTACGGTTCTCGGCTCGAACAGCCGTATCAGAGGCCCCCCTCTGACTAC
91272435 CACCCCTA
66 CACCCCTA
* *
91272443 ATATGCTCTAGCAGGAGTACGGTTCTCGGCTCGATCGGCCGTATCAGAGGCCCCCCTCTGACTAC
1 ATATGCTCTAGCAGGAGTACGGTTCTCGGCTCGAACAGCCGTATCAGAGGCCCCCCTCTGACTAC
91272508 CACCCCT
66 CACCCCT
91272515 GCCTCCTAAA
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
73 67 1.00
ACGTcount: A:0.20, C:0.34, G:0.23, T:0.23
Consensus pattern (73 bp):
ATATGCTCTAGCAGGAGTACGGTTCTCGGCTCGAACAGCCGTATCAGAGGCCCCCCTCTGACTAC
CACCCCTA
Found at i:91274216 original size:295 final size:295
Alignment explanation
Indices: 91273686--91274276 Score: 1173
Period size: 295 Copynumber: 2.0 Consensus size: 295
91273676 TACACCGGGA
91273686 TCCATTTACTAATCAAAACATAAATTTTAACCGTCAGAAGTCATCACACAGTTAAACATTAACAT
1 TCCATTTACTAATCAAAACATAAATTTTAACCGTCAGAAGTCATCACACAGTTAAACATTAACAT
91273751 TCGGCATGTATAGCTAGACTCATACGTGCTATGGTAGTCCTAGAACCGACTAAACCATAGCTCTG
66 TCGGCATGTATAGCTAGACTCATACGTGCTATGGTAGTCCTAGAACCGACTAAACCATAGCTCTG
91273816 ATACCAATCAAATGTAACACCCCGAACCCGAGACCGACACCGGAGTCGAACACGAGATGTTAACA
131 ATACCAATCAAATGTAACACCCCGAACCCGAGACCGACACCGGAGTCGAACACGAGATGTTAACA
91273881 GACTTTAAACCCTTTATAAAAATATTTCTCAGACACTTCCAATCTGCGTACTAGTCGCTTTAAAA
196 GACTTTAAACCCTTTATAAAAATATTTCTCAGACACTTCCAATCTGCGTACTAGTCGCTTTAAAA
91273946 ATCATATCTTGAGTTTCACAACTCAAAAATCAGTT
261 ATCATATCTTGAGTTTCACAACTCAAAAATCAGTT
91273981 TCCATTTACTAATCAAAACATAAATTTTAACCGTCAGAAGTCATCACACAGTTAAACATTAACAT
1 TCCATTTACTAATCAAAACATAAATTTTAACCGTCAGAAGTCATCACACAGTTAAACATTAACAT
91274046 TCGGCATGTATAGCTAGACTCATACGTGCTATGGTAGTCCTAGAACCGACTAAACCATAGCTCTG
66 TCGGCATGTATAGCTAGACTCATACGTGCTATGGTAGTCCTAGAACCGACTAAACCATAGCTCTG
91274111 ATACCAATCAAATGTAACACCCCGAACCCGAGACCGACACCGGAGTCGAACACGAGATGTTAACA
131 ATACCAATCAAATGTAACACCCCGAACCCGAGACCGACACCGGAGTCGAACACGAGATGTTAACA
91274176 GACTTTAAACCCTTTATAAAAATATTTCTCAGACACTTCCAATCTGCGTACTAGTCGCTTTAAAA
196 GACTTTAAACCCTTTATAAAAATATTTCTCAGACACTTCCAATCTGCGTACTAGTCGCTTTAAAA
*
91274241 ATCATATCTTGAGTTTCACAACTCGAAAATCAGTT
261 ATCATATCTTGAGTTTCACAACTCAAAAATCAGTT
91274276 T
1 T
91274277 TGTGATTTTT
Statistics
Matches: 295, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
295 295 1.00
ACGTcount: A:0.36, C:0.24, G:0.13, T:0.27
Consensus pattern (295 bp):
TCCATTTACTAATCAAAACATAAATTTTAACCGTCAGAAGTCATCACACAGTTAAACATTAACAT
TCGGCATGTATAGCTAGACTCATACGTGCTATGGTAGTCCTAGAACCGACTAAACCATAGCTCTG
ATACCAATCAAATGTAACACCCCGAACCCGAGACCGACACCGGAGTCGAACACGAGATGTTAACA
GACTTTAAACCCTTTATAAAAATATTTCTCAGACACTTCCAATCTGCGTACTAGTCGCTTTAAAA
ATCATATCTTGAGTTTCACAACTCAAAAATCAGTT
Found at i:91274463 original size:200 final size:200
Alignment explanation
Indices: 91274120--91274519 Score: 719
Period size: 200 Copynumber: 2.0 Consensus size: 200
91274110 GATACCAATC
91274120 AAATGTAACACCCCGAACCCGAGACCGACACCGGAGTCGAACACGAGATGTTAACAGACTTTAAA
1 AAATGTAACACCCCGAACCCGAGACCGACACCGGAGTCGAACACGAGATGTTAACAGACTTTAAA
* * * *
91274185 CCCTTTATAAAAATATTTCTCAGACACTTCCAATCTGCGTACTAGTCGCTTTAAAAATCATATCT
66 CCCCTTATAAAAAAATTTCCCAGACACTGCCAATCTGCGTACTAGTCGCTTTAAAAATCATATCT
* *
91274250 TGAGTTTCACAACTCGAAAATCAGTTTTGTGATTTTTCCCTGAAACTAGACTCATATGCCCATCT
131 TGAGTTTCACAACTCGAAAATCAGTTTCGTGATTTTTCCCTGAAAATAGACTCATATGCCCATCT
91274315 ACATA
196 ACATA
*
91274320 AAATGTAACACCCCGAACCCGAGACCGACACCGGAGTCGAACACGAGGTGTTAACAGACTTTAAA
1 AAATGTAACACCCCGAACCCGAGACCGACACCGGAGTCGAACACGAGATGTTAACAGACTTTAAA
*
91274385 CCCCTTATAAAAAAATTTCCCAGACACTGCCAATCTGTGTACTAGTCGCTTTAAAAATCATATCT
66 CCCCTTATAAAAAAATTTCCCAGACACTGCCAATCTGCGTACTAGTCGCTTTAAAAATCATATCT
*
91274450 TGAGTTTCACAACTCGAAAATCAGTTTCGTGATTTTTCCCTGAAAATATACTCATATGCCCATCT
131 TGAGTTTCACAACTCGAAAATCAGTTTCGTGATTTTTCCCTGAAAATAGACTCATATGCCCATCT
91274515 ACATA
196 ACATA
91274520 TTTTTTTCTA
Statistics
Matches: 191, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
200 191 1.00
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.27
Consensus pattern (200 bp):
AAATGTAACACCCCGAACCCGAGACCGACACCGGAGTCGAACACGAGATGTTAACAGACTTTAAA
CCCCTTATAAAAAAATTTCCCAGACACTGCCAATCTGCGTACTAGTCGCTTTAAAAATCATATCT
TGAGTTTCACAACTCGAAAATCAGTTTCGTGATTTTTCCCTGAAAATAGACTCATATGCCCATCT
ACATA
Found at i:91275917 original size:29 final size:29
Alignment explanation
Indices: 91275854--91275921 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
91275844 TAATCAACCG
91275854 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
91275883 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
91275912 CGCACACTTA
1 CGCACACTTA
91275922 CATTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:91276040 original size:174 final size:174
Alignment explanation
Indices: 91275743--91276070 Score: 602
Period size: 174 Copynumber: 1.9 Consensus size: 174
91275733 AACTCAAGGT
* *
91275743 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACATTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
91275808 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
91275873 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
91275917 ACTTACATTTTCCGCTGTTCAAAATCGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACATTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
* *
91275982 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCTCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
*
91276047 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
91276071 TGTACAATTT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACATTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:91276064 original size:29 final size:30
Alignment explanation
Indices: 91276030--91276101 Score: 105
Period size: 29 Copynumber: 2.5 Consensus size: 30
91276020 ATCAACCGCT
*
91276030 CACACTTAGTGCCATGTAC-TTTAAACTCG
1 CACACTTAGTGCCATGTACATTTAAACCCG
91276059 CACACTTAGTG-C-TGTACAATTTAAACCCG
1 CACACTTAGTGCCATGTAC-ATTTAAACCCG
91276088 CACACTTAGTGCCA
1 CACACTTAGTGCCA
91276102 ATCTCATGAC
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
27 5 0.13
28 1 0.03
29 31 0.82
30 1 0.03
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (30 bp):
CACACTTAGTGCCATGTACATTTAAACCCG
Found at i:91284484 original size:205 final size:205
Alignment explanation
Indices: 91284124--91284877 Score: 1109
Period size: 206 Copynumber: 3.7 Consensus size: 205
91284114 AAATCTATTT
*
91284124 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
*
91284189 GCGAAAACCAAATCAGCTATGTCTTCGATTCGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
91284254 GGATCTTCTTCAGTATAAACATCTGAAGGTTAGGTCTATTATGTATCTGCTCTCAGTCGAA-ATG
131 GGATCTT-TTCAGTATAAACATCTGAAGGTTAGATCTACTATGTATCTGCTCTCAGTCGAATATG
*
91284318 GAGATGCCAGA
195 GAGATGCCAAA
*
91284329 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * * *
91284394 GTGAAAGCCAAATCAGCTATGTCTTTGATTTGTTCCTTGTAAGCACAAGGAAGCCAAACCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * * *
91284459 GGATCTGTTTCAGTCTAATCATCTGAAGGTTAGATCTACTATGTGTCTGCCCTCCA-TCGAATAT
131 GGATCT-TTTCAGTATAAACATCTGAAGGTTAGATCTACTATGTATCTGCTCT-CAGTCGAATAT
91284523 GGAGACT-CCAAA
194 GGAGA-TGCCAAA
* * * *
91284535 CTTTGATTTGTTCTCTGAAAATACAGAGATGCCAAATCATCTCAGACTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * *
91284600 GCGAAAACCAAACCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * ** * * *
91284665 GGATCTACTTCAGTATAAACATCTAAAGGCCAGATCTGCTATGTATCTGCTCACTGTCGAATATG
131 GGATCT-TTTCAGTATAAACATCTGAAGGTTAGATCTACTATGTATCTGCTCTCAGTCGAATATG
*
91284730 GAGATGCAAAA
195 GAGATGCCAAA
* * *
91284741 CTTTGATTTGTTCTTTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * * * *
91284806 GTGAAAGCCAAATCAGCTATATCTTTGATTTGTTCCTTGTAAGCACAAGGATTCCAAACCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
91284871 GGATCTT
131 GGATCTT
91284878 CCTTCAGCCA
Statistics
Matches: 490, Mismatches: 53, Indels: 12
0.88 0.10 0.02
Matches are distributed among these distances:
205 175 0.36
206 314 0.64
207 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (205 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
GCGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTTTTCAGTATAAACATCTGAAGGTTAGATCTACTATGTATCTGCTCTCAGTCGAATATGG
AGATGCCAAA
Found at i:91288792 original size:40 final size:40
Alignment explanation
Indices: 91288756--91288984 Score: 311
Period size: 40 Copynumber: 5.8 Consensus size: 40
91288746 GGATATAGCT
* *
91288756 ACTAGCTCAAATGCCTTCGGGACTTAGCCCGG-ATATAATA
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
** * * *
91288796 GTTCGTACAAATGCCTTCGGGACTTAGCTCGG-ATATAGTA
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
*
91288836 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* *
91288876 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
91288916 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
91288956 ATTAGCACAAATG-CTTCGGGACTTAGCCC
1 ACTAGCACAAATGCCTTCGGGACTTAGCCC
91288985 CGTTATCATC
Statistics
Matches: 174, Mismatches: 14, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 16 0.09
40 156 0.90
41 2 0.01
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.24
Consensus pattern (40 bp):
ACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:91288886 original size:80 final size:78
Alignment explanation
Indices: 91288730--91288983 Score: 334
Period size: 80 Copynumber: 3.2 Consensus size: 78
91288720 AAACCAAGTA
* * * *
91288730 CCTTCGGGATTTAACCGGATATAGCTACTAGCTCAAATGCCTTCGGGACTTAGCCCGG-ATATAA
1 CCTTCGGGACTTAGCCGGATATAG-TACTAGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAG
* *
91288794 TAGTTCGTACAAATG
64 TAATTCGCACAAATG
*
91288809 CCTTCGGGACTTAGCTCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
1 CCTTCGGGACTTAGC-CGGATATAGT-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
*
91288874 TAACTCGCACAAATG
64 TAATTCGCACAAATG
91288889 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTA
1 CCTTCGGGACTTAG-CCGGATA-TAGT-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTA
* *
91288953 GTCATTAGCACAAATG
63 GTAATTCGCACAAATG
91288969 -CTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
91288984 CCGTTATCAT
Statistics
Matches: 157, Mismatches: 13, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
78 2 0.01
79 28 0.18
80 124 0.79
81 3 0.02
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (78 bp):
CCTTCGGGACTTAGCCGGATATAGTACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
ATTCGCACAAATG
Found at i:91290225 original size:53 final size:52
Alignment explanation
Indices: 91290145--91290249 Score: 192
Period size: 53 Copynumber: 2.0 Consensus size: 52
91290135 AACAACATCA
91290145 ACATACCTTAGTCTAGTGAACCACCATAGCCGATTTTCTCCAAGCTCTTTCC
1 ACATACCTTAGTCTAGTGAACCACCATAGCCGATTTTCTCCAAGCTCTTTCC
*
91290197 NACATACCTTAGTCTAGTGAACCACCATAGCCGATTTTCTCCAAGTTCTTTCC
1 -ACATACCTTAGTCTAGTGAACCACCATAGCCGATTTTCTCCAAGCTCTTTCC
91290250 CTTCTTTTTC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.25, C:0.31, G:0.11, T:0.31
Consensus pattern (52 bp):
ACATACCTTAGTCTAGTGAACCACCATAGCCGATTTTCTCCAAGCTCTTTCC
Found at i:91293381 original size:196 final size:196
Alignment explanation
Indices: 91293047--91293441 Score: 727
Period size: 196 Copynumber: 2.0 Consensus size: 196
91293037 GTCTGGCTAG
* * *
91293047 AAGCCCAAACCAAAGCGATCTTTCTTCTTAATTAGTTTTGGGATTTGAACCTCTCCTTGCAACTG
1 AAGCCCAAACCAAAGCGATCTTTCTTCTCAATTAGTTTTGGGATTTGAACCCCTCCTTGCAACTA
*
91293112 TCTTCCTAGTCCCTTTCCTGGCACTGCTCCCTTCCCCATCATCATTTGCAAGGCCATTCTTGTGG
66 TCTTCCTAGTCCCTTTCCTGGCACTGCTCCCTTCCCCATCATCATTTGCAAGGCCATCCTTGTGG
91293177 CTCTAGATATTTTGGGTACAAGCACCTCACTTCCTTCCAGAATGAAGGTTGCATTGATGATTTCT
131 CTCTAGATATTTTGGGTACAAGCACCTCACTTCCTTCCAGAATGAAGGTTGCATTGATGATTTCT
91293242 A
196 A
91293243 AAGCCCAAACCAAAGCGATCTTTCTTCTCAATTAGTTTTGGGATTTGAACCCCTCCTTGCAACTA
1 AAGCCCAAACCAAAGCGATCTTTCTTCTCAATTAGTTTTGGGATTTGAACCCCTCCTTGCAACTA
* * *
91293308 TCTTCCTAGTCCCTTTCCTGGCACTGCTCCTTTCCTCATCATCATTTGCAGGGCCATCCTTGTGG
66 TCTTCCTAGTCCCTTTCCTGGCACTGCTCCCTTCCCCATCATCATTTGCAAGGCCATCCTTGTGG
91293373 CTCTAGATATTTTGGGTACAAGCACCTCACTTCCTTCCAGAATGAAGGTTGCATTGATGATTTCT
131 CTCTAGATATTTTGGGTACAAGCACCTCACTTCCTTCCAGAATGAAGGTTGCATTGATGATTTCT
91293438 A
196 A
91293439 AAG
1 AAG
91293442 AGCGGAAAGA
Statistics
Matches: 192, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
196 192 1.00
ACGTcount: A:0.22, C:0.28, G:0.16, T:0.34
Consensus pattern (196 bp):
AAGCCCAAACCAAAGCGATCTTTCTTCTCAATTAGTTTTGGGATTTGAACCCCTCCTTGCAACTA
TCTTCCTAGTCCCTTTCCTGGCACTGCTCCCTTCCCCATCATCATTTGCAAGGCCATCCTTGTGG
CTCTAGATATTTTGGGTACAAGCACCTCACTTCCTTCCAGAATGAAGGTTGCATTGATGATTTCT
A
Found at i:91300109 original size:9 final size:9
Alignment explanation
Indices: 91300097--91300151 Score: 53
Period size: 9 Copynumber: 6.3 Consensus size: 9
91300087 CACATAAATG
*
91300097 ATATATACA
1 ATATATAAA
91300106 ATATA-AAA
1 ATATATAAA
91300114 ATATATAAA
1 ATATATAAA
**
91300123 ATA-ATTAGT
1 ATATA-TAAA
91300132 ATATATAAA
1 ATATATAAA
91300141 A-ATATAAA
1 ATATATAAA
91300149 ATA
1 ATA
91300152 AAGTGAGTAA
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
8 16 0.43
9 20 0.54
10 1 0.03
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.33
Consensus pattern (9 bp):
ATATATAAA
Found at i:91300579 original size:25 final size:25
Alignment explanation
Indices: 91300539--91300623 Score: 84
Period size: 25 Copynumber: 3.4 Consensus size: 25
91300529 TACGATATAC
* *
91300539 ATAACATATAAAAAAAAAATAATAA
1 ATAATATATAATAAAAAAATAATAA
* *
91300564 GTAATATATAATAAAAATATAATAA
1 ATAATATATAATAAAAAAATAATAA
**
91300589 ATGTTATATAATAAAATATAAT-ATAA
1 ATAATATATAATAAAA-A-AATAATAA
91300615 AT-ATATATA
1 ATAATATATA
91300624 GGAAAATAAT
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
25 40 0.82
26 7 0.14
27 2 0.04
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.32
Consensus pattern (25 bp):
ATAATATATAATAAAAAAATAATAA
Found at i:91300583 original size:11 final size:11
Alignment explanation
Indices: 91300544--91300619 Score: 55
Period size: 11 Copynumber: 6.5 Consensus size: 11
91300534 TATACATAAC
*
91300544 ATATAAAAAAA
1 ATATAATAAAA
*
91300555 AAATAATAAGTAA
1 ATATAATAA--AA
91300568 TATATAATAAAA
1 -ATATAATAAAA
*
91300580 ATATAATAAATGTT
1 ATATAATAAA---A
91300594 ATATAAT-AAA
1 ATATAATAAAA
*
91300604 ATATAATATAA
1 ATATAATAAAA
91300615 ATATA
1 ATATA
91300620 TATAGGAAAA
Statistics
Matches: 52, Mismatches: 6, Indels: 14
0.72 0.08 0.19
Matches are distributed among these distances:
10 7 0.13
11 24 0.46
12 2 0.04
13 4 0.08
14 15 0.29
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (11 bp):
ATATAATAAAA
Found at i:91310026 original size:43 final size:41
Alignment explanation
Indices: 91309956--91310104 Score: 108
Period size: 43 Copynumber: 3.5 Consensus size: 41
91309946 TGTGTTCTCA
*
91309956 TGTAAGACCACATCTAGGACGTTGGCATCAATCTGTGATTACG
1 TGTAAGACCACATCTAGGAC-ATGGCATCAAT-TGTGATTACG
** * *
91309999 TGTAAGACCATGTCTGGGACATCGGCATCGTATT-TGATT-CG
1 TGTAAGACCACATCTAGGACAT-GGCATC-AATTGTGATTACG
* * * *
91310040 TGTAAGACC-CTATCTGGGACAGTGGCATCGATATGAGA-TAGCA
1 TGTAAGACCAC-ATCTAGGACA-TGGCATCAAT-TGTGATTA-CG
*
91310083 TGTAAGACCACGTCTAGGACAT
1 TGTAAGACCACATCTAGGACAT
91310105 TGGAATTATT
Statistics
Matches: 85, Mismatches: 12, Indels: 19
0.73 0.10 0.16
Matches are distributed among these distances:
40 2 0.02
41 28 0.33
42 10 0.12
43 42 0.49
44 3 0.04
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.27
Consensus pattern (41 bp):
TGTAAGACCACATCTAGGACATGGCATCAATTGTGATTACG
Found at i:91310056 original size:41 final size:42
Alignment explanation
Indices: 91309956--91310069 Score: 119
Period size: 41 Copynumber: 2.7 Consensus size: 42
91309946 TGTGTTCTCA
* * *
91309956 TGTAAGACCACATCTAGGAC-GTTGGCATC-AATCTGTGATTACG
1 TGTAAGACCATATCTGGGACAG-TGGCATCGTAT-T-TGATTACG
*
91309999 TGTAAGACCATGTCTGGGACA-TCGGCATCGTATTTGATT-CG
1 TGTAAGACCATATCTGGGACAGT-GGCATCGTATTTGATTACG
*
91310040 TGTAAGACCCTATCTGGGACAGTGGCATCG
1 TGTAAGACCATATCTGGGACAGTGGCATCG
91310070 ATATGAGATA
Statistics
Matches: 61, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
41 28 0.46
42 7 0.11
43 24 0.39
44 2 0.03
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGACAGTGGCATCGTATTTGATTACG
Found at i:91313343 original size:20 final size:20
Alignment explanation
Indices: 91313277--91313342 Score: 114
Period size: 20 Copynumber: 3.3 Consensus size: 20
91313267 ATTTTGATAA
91313277 ACATGACATGTATGATATGC
1 ACATGACATGTATGATATGC
91313297 ACATGACATGTATGATATGC
1 ACATGACATGTATGATATGC
* *
91313317 ACATGATATGTATGATAGGC
1 ACATGACATGTATGATATGC
91313337 ACATGA
1 ACATGA
91313343 TGTATTCATA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29
Consensus pattern (20 bp):
ACATGACATGTATGATATGC
Found at i:91313508 original size:25 final size:24
Alignment explanation
Indices: 91313393--91313512 Score: 179
Period size: 24 Copynumber: 5.0 Consensus size: 24
91313383 GAGGAAGTGC
*
91313393 AAAAGGGCTTATGCCCCGGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
91313417 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
91313441 AAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
91313465 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
91313489 AAAAGAGGCTT-GGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
91313513 ATGATAAAGC
Statistics
Matches: 89, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
24 76 0.85
25 13 0.15
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.30
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:91314999 original size:14 final size:14
Alignment explanation
Indices: 91314963--91315006 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
91314953 ATGTACAATA
91314963 TATATGTTATAGTAAT
1 TATATG-TATA-TAAT
* *
91314979 AAAATGTATATAAT
1 TATATGTATATAAT
91314993 TATATGTATATAAT
1 TATATGTATATAAT
91315007 ATAAGTTATG
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
14 16 0.67
15 4 0.17
16 4 0.17
ACGTcount: A:0.45, C:0.00, G:0.09, T:0.45
Consensus pattern (14 bp):
TATATGTATATAAT
Found at i:91317777 original size:27 final size:27
Alignment explanation
Indices: 91317690--91317796 Score: 101
Period size: 28 Copynumber: 3.9 Consensus size: 27
91317680 CTGCTAGAAT
* * *
91317690 AGATA-TTGTGACAGAGTCAACAGATAC
1 AGATATTTGTGGCAGAGCCACCAGAT-C
* * *
91317717 AGATAATTATGGCAGGGCCACCAGAAAT-
1 AGATATTTGTGGCAGAGCCACCAG--ATC
* *
91317745 AGATATTTGTGGTAGAGCTACCAGATC
1 AGATATTTGTGGCAGAGCCACCAGATC
91317772 AGATATTTGTGGCAGAGCCACCAGA
1 AGATATTTGTGGCAGAGCCACCAGA
91317797 ATGCTTCCTC
Statistics
Matches: 64, Mismatches: 12, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
26 2 0.03
27 28 0.44
28 32 0.50
30 2 0.03
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (27 bp):
AGATATTTGTGGCAGAGCCACCAGATC
Found at i:91318903 original size:14 final size:13
Alignment explanation
Indices: 91318878--91318911 Score: 54
Period size: 11 Copynumber: 2.8 Consensus size: 13
91318868 CGAATATGGA
91318878 GAAAAGAAAAGAT
1 GAAAAGAAAAGAT
91318891 GAAAAGAAAA-A-
1 GAAAAGAAAAGAT
91318902 GAAAAGAAAA
1 GAAAAGAAAA
91318912 ATATGAATGA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 10 0.48
12 1 0.05
13 10 0.48
ACGTcount: A:0.76, C:0.00, G:0.21, T:0.03
Consensus pattern (13 bp):
GAAAAGAAAAGAT
Found at i:91326286 original size:47 final size:47
Alignment explanation
Indices: 91326236--91326586 Score: 301
Period size: 47 Copynumber: 7.5 Consensus size: 47
91326226 GTGCCCATGC
* * *
91326236 CATGTCCTAGACATGGTTTTACACTGGCTCAT-GTCTCAAGTCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGTCGATG
* * * *
91326282 CCATGTCCTAGACATGGTCTTACACTGACT-ATCATCTCGTAGCCGATG
1 -CATGTCCCAGACATGGTCTTACACTGGCTCATCATCTC-AAGTCGATG
* * *
91326330 CATGTCCCAGACAT-GTCTTACACTAGCTTA-CATCTCGAGTCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGTCGATG
* * *
91326375 CCATGTCCCAAACATGGTCTTACACTGACT-ATCATCTCGTAGTCGATG
1 -CATGTCCCAGACATGGTCTTACACTGGCTCATCATCTC-AAGTCGATG
* * * * *
91326423 CATGTCCCAAACAT-GTCTTACACTGGCTTA-CATCTTGAGGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTCATCATC-TCAAGTCGATG
** *
91326469 CATGTCCCAGACAT-GTCTTACACTAACTC-TCATCTTAATGTCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAA-GTCGATG
* * * *** *
91326515 TCATGTCCCAGACATGGTCCTACACTGGCTC-TCGTAATGTGGCCGATG
1 -CATGTCCCAGACATGGTCTTACACTGGCTCATCAT-CTCAAGTCGATG
91326563 CATGTCCCAGACAT-GTCTTACACT
1 CATGTCCCAGACATGGTCTTACACT
91326587 AGCCAACAAT
Statistics
Matches: 254, Mismatches: 36, Indels: 29
0.80 0.11 0.09
Matches are distributed among these distances:
45 9 0.04
46 101 0.40
47 107 0.42
48 36 0.14
49 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (47 bp):
CATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGTCGATG
Found at i:91326364 original size:46 final size:46
Alignment explanation
Indices: 91326277--91326589 Score: 279
Period size: 46 Copynumber: 6.7 Consensus size: 46
91326267 TGTCTCAAGT
*
91326277 CGATGCCATGTCCTAGACATGGTCTTACACT-GAC-TATCATCTCGTAGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAG-CTTA-CATCTCGTAGC
*
91326325 CGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCG-AGT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGTAGC
* *
91326370 CGATGCCATGTCCCAAACATGGTCTTACACT-GAC-TATCATCTCGTAGT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAG-CTTA-CATCTCGTAGC
* * *
91326418 CGATGCATGTCCCAAACATGTCTTACACTGGCTTACATCTTG-AGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGTA-GC
* *
91326464 CGATGCATGTCCCAGACATGTCTTACACTAACTCT-CATCT--TAATGT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCT-TACATCTCGT-A-GC
* * * * *
91326510 CGATGTCATGTCCCAGACATGGTCCTACACTGGCTCT-CGTAAT-GTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCT-TACAT-CTCGTAGC
91326558 CGATGCATGTCCCAGACATGTCTTACACTAGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC
91326590 CAACAATAAC
Statistics
Matches: 229, Mismatches: 19, Indels: 36
0.81 0.07 0.13
Matches are distributed among these distances:
45 8 0.03
46 105 0.46
47 80 0.35
48 34 0.15
49 1 0.00
50 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGTAGC
Found at i:91326375 original size:93 final size:94
Alignment explanation
Indices: 91326236--91326544 Score: 396
Period size: 93 Copynumber: 3.3 Consensus size: 94
91326226 GTGCCCATGC
* * * ** * *
91326236 CATGTCCTAGACATGGTTTTACACTGGCTCATGTCTCAAGTCGATGCCATGTCCTAGACATGGTC
1 CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGTCGATGCCATGTCCCAGACATGGTC
*
91326301 TTACACTGACTATCATCTCGTAGCCGATG
66 TTACACTGACTATCATCTCGTAGTCGATG
* *
91326330 CATGTCCCAGACAT-GTCTTACACTAGCTTACATCTCGAGTCGATGCCATGTCCCAAACATGGTC
1 CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGTCGATGCCATGTCCCAGACATGGTC
91326394 TTACACTGACTATCATCTCGTAGTCGATG
66 TTACACTGACTATCATCTCGTAGTCGATG
* * *
91326423 CATGTCCCAAACAT-GTCTTACACTGGCTTACATCTTGAGGCCGATG-CATGTCCCAGACAT-GT
1 CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGA-GTCGATGCCATGTCCCAGACATGGT
* *
91326485 CTTACACTAACTCTCATCT--TAATGTCGATG
65 CTTACACTGACTATCATCTCGT-A-GTCGATG
*
91326515 TCATGTCCCAGACATGGTCCTACACTGGCT
1 -CATGTCCCAGACATGGTCTTACACTGGCT
91326545 CTCGTAATGT
Statistics
Matches: 191, Mismatches: 19, Indels: 10
0.87 0.09 0.05
Matches are distributed among these distances:
90 1 0.01
91 1 0.01
92 26 0.14
93 131 0.69
94 32 0.17
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (94 bp):
CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGTCGATGCCATGTCCCAGACATGGTC
TTACACTGACTATCATCTCGTAGTCGATG
Found at i:91326570 original size:94 final size:91
Alignment explanation
Indices: 91326277--91326587 Score: 333
Period size: 93 Copynumber: 3.3 Consensus size: 91
91326267 TGTCTCAAGT
* * * *
91326277 CGATGCCATGTCCTAGACATGGTCTTACACTGACTATCATCTCGTAGCCGATGCATGTCCCAGAC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAACTATCATCTC-TAGTCGATGCATGTCCCAAAC
* * * *
91326342 ATGTCTTACACTAGCTTACAT-CTCGA-GT
63 ATGTCCTACACTGGCTTACATAAT-GAGGC
* *
91326370 CGATGCCATGTCCCAAACATGGTCTTACACTGACTATCATCTCGTAGTCGATGCATGTCCCAAAC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAACTATCATCTC-TAGTCGATGCATGTCCCAAAC
* **
91326435 ATGTCTTACACTGGCTTACATCTTGAGGC
63 ATGTCCTACACTGGCTTACATAATGAGGC
* *
91326464 CGATGCATGTCCCAGACATGTCTTACACTAACTCTCATCT-TAATGTCGATGTCATGTCCCAGAC
1 CGATGCATGTCCCAGACATGTCTTACACTAACTATCATCTCT-A-GTCGATG-CATGTCCCAAAC
* *
91326528 ATGGTCCTACACTGGCTCT-CGTAATGTGGC
63 AT-GTCCTACACTGGCT-TACATAATGAGGC
91326558 CGATGCATGTCCCAGACATGTCTTACACTA
1 CGATGCATGTCCCAGACATGTCTTACACTA
91326588 GCCAACAATA
Statistics
Matches: 195, Mismatches: 16, Indels: 13
0.87 0.07 0.06
Matches are distributed among these distances:
90 1 0.01
91 1 0.01
92 26 0.13
93 109 0.56
94 57 0.29
95 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (91 bp):
CGATGCATGTCCCAGACATGTCTTACACTAACTATCATCTCTAGTCGATGCATGTCCCAAACATG
TCCTACACTGGCTTACATAATGAGGC
Found at i:91334004 original size:46 final size:46
Alignment explanation
Indices: 91333852--91334209 Score: 318
Period size: 46 Copynumber: 7.7 Consensus size: 46
91333842 TGCGTAAGGT
* ** * *
91333852 GCCGATGCCATGTCCTAGACATGATCTTACACTGGCTCGCATCT-TAA
1 GCCGATG-CATGTCCCAGACATG-TCTTACACTGGCTTACATCTCGAG
* * * *
91333899 GTCGATGCCATGTCCCAAACATGGTCTTACACTGAC-TATCATCTAGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTA-CATCTCG-AG
* * *
91333947 GCTGATGCATGTCCCAGACATATCTTACACTGGCTTAAATCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAG
* * *
91333993 GCCAATTCATGTCCCAGACATGTCTTACACTGAC-TATCATCTCGTA-
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTA-CATCTCG-AG
*
91334039 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAG
* * * *
91334085 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCT-TACATCTCGAG
* * * *
91334131 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CGTAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACAT-CTCGAG
*
91334179 GCCGATGCATATCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
91334210 AGCCAACAAT
Statistics
Matches: 262, Mismatches: 35, Indels: 29
0.80 0.11 0.09
Matches are distributed among these distances:
45 4 0.02
46 145 0.55
47 81 0.31
48 30 0.11
49 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAG
Found at i:91334046 original size:92 final size:92
Alignment explanation
Indices: 91333852--91334209 Score: 359
Period size: 92 Copynumber: 3.8 Consensus size: 92
91333842 TGCGTAAGGT
* *** * * * *
91333852 GCCGATGCCATGTCCTAGACATGATCTTACACTGGCTCGCATCT-TAAGTCGATGCCATGTCCCA
1 GCCGATG-CATGTCCCAGACATG-TCTTACACTGGCTTAAATCTCGAGGCCAATG-CATGTCCCA
* *
91333916 AACATGGTCTTACACTGACTATCATCTAGTA
63 GACAT-GTCTTACACTGACTATCATCTCGTA
* * *
91333947 GCTGATGCATGTCCCAGACATATCTTACACTGGCTTAAATCTCGAGGCCAATTCATGTCCCAGAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTAAATCTCGAGGCCAATGCATGTCCCAGAC
91334012 ATGTCTTACACTGACTATCATCTCGTA
66 ATGTCTTACACTGACTATCATCTCGTA
** *
91334039 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCCAGAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTAAATCTCGAGGCCAATGCATGTCCCAGAC
* * *
91334104 ATGTCTTACACT-AGCTCTCGTCTC-AA
66 ATGTCTTACACTGA-CTATCATCTCGTA
* * * * *
91334130 TGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCGTAA--T-GTGGCCGATGCATATC
1 -GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-T--AAATCTCGAGGCCAATGCATGTC
91334192 CCAGACATGTCTTACACT
60 CCAGACATGTCTTACACT
91334210 AGCCAACAAT
Statistics
Matches: 227, Mismatches: 28, Indels: 17
0.83 0.10 0.06
Matches are distributed among these distances:
91 2 0.01
92 109 0.48
93 44 0.19
94 64 0.28
95 8 0.04
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (92 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTAAATCTCGAGGCCAATGCATGTCCCAGAC
ATGTCTTACACTGACTATCATCTCGTA
Found at i:91336297 original size:40 final size:40
Alignment explanation
Indices: 91336249--91336356 Score: 189
Period size: 40 Copynumber: 2.7 Consensus size: 40
91336239 GCAAACACAT
* * *
91336249 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
91336289 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
91336329 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
91336357 TCCAATGCTC
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 65 1.00
ACGTcount: A:0.21, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:91343364 original size:28 final size:28
Alignment explanation
Indices: 91343324--91343383 Score: 104
Period size: 28 Copynumber: 2.1 Consensus size: 28
91343314 TAACCCTAGA
91343324 GGTATAGAGGTAATTTTGCATACATAGG
1 GGTATAGAGGTAATTTTGCATACATAGG
91343352 GGTATA-ATGGTAATTTTGCATACATAGG
1 GGTATAGA-GGTAATTTTGCATACATAGG
91343380 GGTA
1 GGTA
91343384 CTCTAGTACA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
27 1 0.03
28 30 0.97
ACGTcount: A:0.32, C:0.07, G:0.28, T:0.33
Consensus pattern (28 bp):
GGTATAGAGGTAATTTTGCATACATAGG
Found at i:91347119 original size:18 final size:19
Alignment explanation
Indices: 91347084--91347124 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
91347074 TCTCAATTCA
*
91347084 TCATTTCATATTTCATTTC
1 TCATTTCATATATCATTTC
91347103 TCATTTCATA-ATCATTTC
1 TCATTTCATATATCATTTC
91347121 TCAT
1 TCAT
91347125 CTTTTCCATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 11 0.52
19 10 0.48
ACGTcount: A:0.24, C:0.22, G:0.00, T:0.54
Consensus pattern (19 bp):
TCATTTCATATATCATTTC
Found at i:91347165 original size:18 final size:18
Alignment explanation
Indices: 91347084--91347169 Score: 64
Period size: 18 Copynumber: 4.3 Consensus size: 18
91347074 TCTCAATTCA
*
91347084 TCATTTCATATTTCATTTC
1 TCATCTCATA-TTCATTTC
* *
91347103 TCATTTCATAATCATTTC
1 TCATCTCATATTCATTTC
*
91347121 TCATCTTTTCCATTTTAACATTTTC
1 TCATC---T-CATATT--CA-TTTC
91347146 TCATCTCATATTCATTTC
1 TCATCTCATATTCATTTC
91347164 TCATCT
1 TCATCT
91347170 TTGTCATTTC
Statistics
Matches: 55, Mismatches: 5, Indels: 15
0.73 0.07 0.20
Matches are distributed among these distances:
18 21 0.38
19 12 0.22
21 6 0.11
22 5 0.09
24 2 0.04
25 9 0.16
ACGTcount: A:0.22, C:0.24, G:0.00, T:0.53
Consensus pattern (18 bp):
TCATCTCATATTCATTTC
Found at i:91348394 original size:12 final size:12
Alignment explanation
Indices: 91348379--91348403 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
91348369 CTATTGTTTT
91348379 TATTATTATAAC
1 TATTATTATAAC
91348391 TATTATTATAAC
1 TATTATTATAAC
91348403 T
1 T
91348404 TAATATATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (12 bp):
TATTATTATAAC
Found at i:91350954 original size:44 final size:45
Alignment explanation
Indices: 91350872--91350997 Score: 182
Period size: 44 Copynumber: 2.8 Consensus size: 45
91350862 TTTCTTTGAT
* * * *
91350872 TCGTGATGTCATAACATCTTTTAGCTATGGTCTCACTCAATAGAA
1 TCGTGATGCCATAACGTCTTTCAGCTATGGTCTTACTCAATAGAA
91350917 TCGTGATGCCATAACGT-TTTCAGCTATGGTCTTACTCAATAGAA
1 TCGTGATGCCATAACGTCTTTCAGCTATGGTCTTACTCAATAGAA
* * *
91350961 CCGTCATGCCATAACGTCTTTCAACTATGGTCTTACT
1 TCGTGATGCCATAACGTCTTTCAGCTATGGTCTTACT
91350998 TTGTAACAGC
Statistics
Matches: 73, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
44 40 0.55
45 33 0.45
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.35
Consensus pattern (45 bp):
TCGTGATGCCATAACGTCTTTCAGCTATGGTCTTACTCAATAGAA
Found at i:91352339 original size:96 final size:96
Alignment explanation
Indices: 91352171--91352439 Score: 310
Period size: 96 Copynumber: 2.8 Consensus size: 96
91352161 TATGTGTGCT
* * *
91352171 AGTGTAAGACCATGTCTGGGACATGGCATCGACCA-T-ATTATGTGTGCTAGTGAAAGACCATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGA-CATTGA-TAAGTGTACTAGTGTAAGACCATGT
* * ** *
91352234 TTGGAACATGGCATTGGCAATGTTATGAGAGCC
64 CTGGGACATGGCATTGGCAACATTATAAGAGCC
* * * * *
91352267 AGTGTCAGACCATGTTTGGAACATGGCATCGGCGTTGATAAGTGTACTAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGATAAGTGTACTAGTGTAAGACCATGTCT
* *
91352332 GGGACATGGCGTTGGCCACATTATAAGAGCC
66 GGGACATGGCATTGGCAACATTATAAGAGCC
* * *
91352363 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACGAG-AGCTAGTGTAAGACCATGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGATAAGTGTA-CTAGTGTAAGACCATGTC
* *
91352427 TAGGACAGGGCAT
65 TGGGACATGGCAT
91352440 CAGTAATTTA
Statistics
Matches: 144, Mismatches: 26, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
95 2 0.01
96 141 0.98
97 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (96 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGATAAGTGTACTAGTGTAAGACCATGTCT
GGGACATGGCATTGGCAACATTATAAGAGCC
Found at i:91352409 original size:48 final size:48
Alignment explanation
Indices: 91352158--91352440 Score: 236
Period size: 48 Copynumber: 5.9 Consensus size: 48
91352148 GACATTTGGG
* *
91352158 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCA-
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGA-CAT
* * * * * * * *
91352206 T-ATTATGTGTGCTAGTGAAAGACCATGTTTGGAACATGGCATTGGCAA
1 TGA-TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACAT
* * * * * * *
91352254 TGTTATGAGAGCCAGTGTCAGACCATGTTTGGAACATGGCATCGGCGT
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACAT
* * * *
91352302 TGATAAGTGTA-CTAGTGTAAGACCATGTCTGGGACATGGCGTTGGCCACAT
1 TGATATGAG-AGCTAGTGTAAGACCATGTCTGGGACATGGC-AT--CGACAT
*
91352353 T-ATA--AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACAT
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACAT
* * * *
91352398 TGAGACGAGAGCTAGTGTAAGACCATGTCTAGGACAGGGCATC
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
91352441 AGTAATTTAC
Statistics
Matches: 191, Mismatches: 33, Indels: 22
0.78 0.13 0.09
Matches are distributed among these distances:
45 6 0.03
46 2 0.01
47 5 0.03
48 169 0.88
49 2 0.01
50 3 0.02
51 4 0.02
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (48 bp):
TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACAT
Found at i:91352421 original size:144 final size:144
Alignment explanation
Indices: 91352158--91352425 Score: 347
Period size: 144 Copynumber: 1.9 Consensus size: 144
91352148 GACATTTGGG
* * * ** * *
91352158 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCATATTATGTGTGCTAGTG
1 TGATAAGTGTACTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTATAAGAGCCAGTG
* * * ** * *
91352223 AAAGACCATGTTTGGAACATGGCATTGGCAATGTTATGAGAGCCAGTGTCAGACCATGTTTGGAA
66 AAAGACCATGTCTGGAACATGGCATCGACAATGAGACGAGAGCCAGTGTAAGACCATGTTTGGAA
91352288 CATGGCATCGGCGT
131 CATGGCATCGGCGT
* * *
91352302 TGATAAGTGTACTAGTGTAAGACCATGTCTGGGACATGGCGTTGGCCACATTATAAGAGCCAGTG
1 TGATAAGTGTACTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTATAAGAGCCAGTG
* * * *
91352367 TAAGACCATGTCTGGGACATGGCATCGACATTGAGACGAGAGCTAGTGTAAGACCATGT
66 AAAGACCATGTCTGGAACATGGCATCGACAATGAGACGAGAGCCAGTGTAAGACCATGT
91352426 CTAGGACAGG
Statistics
Matches: 103, Mismatches: 21, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
144 103 1.00
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.26
Consensus pattern (144 bp):
TGATAAGTGTACTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTATAAGAGCCAGTG
AAAGACCATGTCTGGAACATGGCATCGACAATGAGACGAGAGCCAGTGTAAGACCATGTTTGGAA
CATGGCATCGGCGT
Found at i:91354575 original size:26 final size:25
Alignment explanation
Indices: 91354546--91354603 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 25
91354536 ATTTACTAAA
*
91354546 ATACCCTAAGTATG-AAAATTACCATT
1 ATACCCT-AG-ATGCAAAATGACCATT
*
91354572 ATACCCCTAGGTGCAAAATGACCATT
1 ATA-CCCTAGATGCAAAATGACCATT
91354598 ATACCC
1 ATACCC
91354604 CTTAGGGTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
25 5 0.18
26 19 0.68
27 4 0.14
ACGTcount: A:0.38, C:0.26, G:0.10, T:0.26
Consensus pattern (25 bp):
ATACCCTAGATGCAAAATGACCATT
Done.