Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 272 of 284
Found at i:91354784 original size:28 final size:28
Alignment explanation
Indices: 91354717--91354826 Score: 145
Period size: 28 Copynumber: 4.0 Consensus size: 28
91354707 AAGCGTTCTA
91354717 GTGGCTCTGCCACAAATATCTG-ATCTG
1 GTGGCTCTGCCACAAATATCTGTATCTG
*
91354744 GTGGCTCTGCCACAAATATCTGTTTCTG
1 GTGGCTCTGCCACAAATATCTGTATCTG
* * *
91354772 GTGGCCCTACCACAACTATCTGTATCTG
1 GTGGCTCTGCCACAAATATCTGTATCTG
* *
91354800 GTGACTCTGTCAC-AATATCTGT-TCTG
1 GTGGCTCTGCCACAAATATCTGTATCTG
91354826 G
1 G
91354827 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
26 5 0.07
27 30 0.42
28 37 0.51
ACGTcount: A:0.20, C:0.26, G:0.21, T:0.33
Consensus pattern (28 bp):
GTGGCTCTGCCACAAATATCTGTATCTG
Found at i:91354817 original size:55 final size:54
Alignment explanation
Indices: 91354711--91354826 Score: 153
Period size: 55 Copynumber: 2.1 Consensus size: 54
91354701 TGGAGGAAGC
* * * *
91354711 GTTCTAGTGGCTCTGCCACAAATATCTGATCTGGTGGCTCTGCCACAAATATCT
1 GTTCTGGTGGCCCTACCACAAATATCTGATCTGGTGACTCTGCCACAAATATCT
* *
91354765 GTTTCTGGTGGCCCTACCACAACTATCTGTATCTGGTGACTCTGTCAC-AATATCT
1 G-TTCTGGTGGCCCTACCACAAATATCTG-ATCTGGTGACTCTGCCACAAATATCT
91354820 GTTCTGG
1 GTTCTGG
91354827 CAGCCATGCT
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
54 7 0.13
55 31 0.57
56 16 0.30
ACGTcount: A:0.20, C:0.26, G:0.21, T:0.34
Consensus pattern (54 bp):
GTTCTGGTGGCCCTACCACAAATATCTGATCTGGTGACTCTGCCACAAATATCT
Found at i:91355162 original size:17 final size:17
Alignment explanation
Indices: 91355140--91355176 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
91355130 TAGTGGGCTT
91355140 GGAGCTGTGAGGGATTA
1 GGAGCTGTGAGGGATTA
91355157 GGAGCTGTGAGGGATTA
1 GGAGCTGTGAGGGATTA
91355174 GGA
1 GGA
91355177 TTGGCCACTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.24, C:0.05, G:0.49, T:0.22
Consensus pattern (17 bp):
GGAGCTGTGAGGGATTA
Found at i:91356122 original size:41 final size:41
Alignment explanation
Indices: 91356033--91356125 Score: 159
Period size: 41 Copynumber: 2.3 Consensus size: 41
91356023 GCGTGTGGCT
* * *
91356033 AGGCCGTATGTGACACACTGTCTGCCCCATAGTGTGCAGTC
1 AGGCCGTGTGTGACACACGGTCTGCCCCATAGCGTGCAGTC
91356074 AGGCCGTGTGTGACACACGGTCTGCCCCATAGCGTGCAGTC
1 AGGCCGTGTGTGACACACGGTCTGCCCCATAGCGTGCAGTC
91356115 AGGCCGTGTGT
1 AGGCCGTGTGT
91356126 CCACTGCACC
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 49 1.00
ACGTcount: A:0.17, C:0.29, G:0.31, T:0.23
Consensus pattern (41 bp):
AGGCCGTGTGTGACACACGGTCTGCCCCATAGCGTGCAGTC
Found at i:91364889 original size:40 final size:38
Alignment explanation
Indices: 91364741--91364893 Score: 207
Period size: 38 Copynumber: 4.0 Consensus size: 38
91364731 CACTCGATAC
*
91364741 ATATCCGGGTTAAGTCCCGCAGGCTTCGTGCTGGTAAT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
91364779 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
** * *
91364817 ATATCCATGTTAAATCCCGCAGGCTTTGTGCTGGTACT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
* * * *
91364855 ATATCTGGGCTTAAAGTTCTGCAGGCTTTGTGCTGGTAA
1 ATATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAA
91364894 CTGGATTCGG
Statistics
Matches: 102, Mismatches: 11, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
38 77 0.75
39 5 0.05
40 20 0.20
ACGTcount: A:0.20, C:0.22, G:0.26, T:0.32
Consensus pattern (38 bp):
ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
Found at i:91371177 original size:39 final size:39
Alignment explanation
Indices: 91371118--91371233 Score: 178
Period size: 39 Copynumber: 3.0 Consensus size: 39
91371108 GCACGTGGCT
* *
91371118 TGCGGACTTCAAGTCCGGATATATTTCTAGCATATAGCC
1 TGCGGACTTCATGTCCGGATATATTTCAAGCATATAGCC
* * *
91371157 TGCGGACCTCATGTCTGGATATATTACAAGCATATAGCC
1 TGCGGACTTCATGTCCGGATATATTTCAAGCATATAGCC
*
91371196 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGC
1 TGCGGACTTCATGTCCGGATATATTTCAAGCATATAGC
91371234 TTGTGAAAGC
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 68 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (39 bp):
TGCGGACTTCATGTCCGGATATATTTCAAGCATATAGCC
Found at i:91373934 original size:53 final size:53
Alignment explanation
Indices: 91373854--91373959 Score: 203
Period size: 53 Copynumber: 2.0 Consensus size: 53
91373844 CCCAAAAATA
91373854 GACATGCATATTCGGCCAAGGGGAAAGAAATTAGCTAATATGTTGTGTTGATG
1 GACATGCATATTCGGCCAAGGGGAAAGAAATTAGCTAATATGTTGTGTTGATG
*
91373907 GACATGCATATTCGGCCAAGGGTAAAGAAATTAGCTAATATGTTGTGTTGATG
1 GACATGCATATTCGGCCAAGGGGAAAGAAATTAGCTAATATGTTGTGTTGATG
91373960 CATGATGTTT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.32, C:0.11, G:0.27, T:0.29
Consensus pattern (53 bp):
GACATGCATATTCGGCCAAGGGGAAAGAAATTAGCTAATATGTTGTGTTGATG
Found at i:91374482 original size:80 final size:79
Alignment explanation
Indices: 91374333--91374555 Score: 214
Period size: 80 Copynumber: 2.8 Consensus size: 79
91374323 TTGAATGCTG
* * * * * * * * * *
91374333 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGCAAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTATGC-GAGCTACTAAAGCCGGGCTAAG-TCCCGAAGGCATT
*
91374397 TGTGCGAGATACTAAA
64 CGTGCGAGATACTAAA
* * * *
91374413 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-ATGCGAGCTACTAAAGCCGGGCTAAGTCCCGAAGGCATTC
* **
91374478 GTGCGAGTTGTTAAA
65 GTGCGAGATACTAAA
* * * *
91374493 TCCGGGTTATGTCCCGAAGGCATTATGTGAGCTACTAAATCCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTATGCGAGCTACTAAAGCCGGGCTAAGTCCCGAAGGCATT
91374556 TGAACGAGGA
Statistics
Matches: 118, Mismatches: 23, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
79 33 0.28
80 81 0.69
81 4 0.03
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTATGCGAGCTACTAAAGCCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGATACTAAA
Found at i:91374543 original size:39 final size:40
Alignment explanation
Indices: 91374386--91374555 Score: 216
Period size: 40 Copynumber: 4.3 Consensus size: 40
91374376 GGACTAAGAT
* * *
91374386 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* *
91374426 CCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
** *
91374466 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * * *
91374506 CCGAAGGCATT-ATGTGAGCTACTAAATCCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
91374545 CCGAAGGCATT
1 CCGAAGGCATT
91374556 TGAACGAGGA
Statistics
Matches: 116, Mismatches: 14, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 33 0.28
40 83 0.72
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:91376508 original size:40 final size:40
Alignment explanation
Indices: 91376278--91376509 Score: 297
Period size: 40 Copynumber: 5.8 Consensus size: 40
91376268 CATTTGAATG
* * * *
91376278 ATATCCGGGCTAAGTCCCGAATGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
* * * *
91376318 TTATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
* *
91376358 TTATCCGGGCTAAGACCCGAAGGCATTTGTACGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
91376398 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
91376438 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* * * *
91376478 ATACCCGGGTTAAGACTCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
91376510 TTGTGGTTAT
Statistics
Matches: 178, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
40 175 0.98
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
Found at i:91382117 original size:38 final size:38
Alignment explanation
Indices: 91382066--91382180 Score: 185
Period size: 38 Copynumber: 3.0 Consensus size: 38
91382056 CTAGGTTTAG
*
91382066 TCCCGCAGGCTTCGTCCTGGTAATATATCCGGGTTAAA
1 TCCCGCAGGCTTCGTACTGGTAATATATCCGGGTTAAA
*
91382104 TCCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAA
1 TCCCGCAGGCTTCGTACTGGTAATATATCCGGGTTAAA
* *
91382142 TCCCGCAGGCTTAGTACTGGTACTATATCCGGGCTTAAA
1 TCCCGCAGGCTTCGTACTGGTAATATATCCGGG-TTAAA
91382181 GTTCTGCAGG
Statistics
Matches: 72, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
38 67 0.93
39 5 0.07
ACGTcount: A:0.22, C:0.25, G:0.24, T:0.29
Consensus pattern (38 bp):
TCCCGCAGGCTTCGTACTGGTAATATATCCGGGTTAAA
Found at i:91387841 original size:29 final size:28
Alignment explanation
Indices: 91387775--91387867 Score: 127
Period size: 28 Copynumber: 3.3 Consensus size: 28
91387765 AAGTCTACAT
* *
91387775 ACATGCATATGGCCCACTAGGCCCAATC
1 ACATTCATATGGCCCATTAGGCCCAATC
*
91387803 TA-TTTCATATGGCCCATTAGGCCCAAATC
1 -ACATTCATATGGCCCATTAGGCCC-AATC
91387832 ACATTCATATGGCCCATTAGGCCCAATC
1 ACATTCATATGGCCCATTAGGCCCAATC
91387860 ACA-TCATA
1 ACATTCATA
91387868 GTCATGCAAT
Statistics
Matches: 58, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
27 5 0.09
28 27 0.47
29 26 0.45
ACGTcount: A:0.30, C:0.31, G:0.14, T:0.25
Consensus pattern (28 bp):
ACATTCATATGGCCCATTAGGCCCAATC
Found at i:91390210 original size:18 final size:20
Alignment explanation
Indices: 91390168--91390204 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
91390158 ATATTTTATG
*
91390168 ATTA-TTTAATTAGATATAT
1 ATTATTTTAATGAGATATAT
91390187 ATTATTTTAATGAGATAT
1 ATTATTTTAATGAGATAT
91390205 TTTATTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (20 bp):
ATTATTTTAATGAGATATAT
Found at i:91392322 original size:46 final size:46
Alignment explanation
Indices: 91392270--91392542 Score: 327
Period size: 46 Copynumber: 6.0 Consensus size: 46
91392260 AGTGTGCTCT
* *
91392270 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
91392316 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGC-AC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
91392361 CTGATATGAAA-CATGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGA-GTAAGACCATGGTTGAAAGATACCATGGCAAC
* ** * * *
91392407 ATGACGGGAAATAAATAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
91392453 GTGACATGAAATGAATATGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
91392499 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGACATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
91392543 TCATGTCAAA
Statistics
Matches: 201, Mismatches: 22, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
45 43 0.21
46 157 0.78
47 1 0.00
ACGTcount: A:0.40, C:0.16, G:0.24, T:0.21
Consensus pattern (46 bp):
CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:91392426 original size:91 final size:91
Alignment explanation
Indices: 91392270--91392542 Score: 352
Period size: 91 Copynumber: 3.0 Consensus size: 91
91392260 AGTGTGCTCT
* * * * * *
91392270 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAACGTGTAAG
1 CTGATATGAAA-ATGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAGTAAG
91392335 ACCATGGTTGAAAGATACCATGGCA-C
65 ACCATGGTTGAAAGATACCATGGCAGC
* * *
91392361 CTGATATGAAACATGTAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAATAAATAAG
1 CTGATATGAAA-ATGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAGTAAG
91392426 ACCATGGTTGAAAGATACCATGGCAGC
65 ACCATGGTTGAAAGATACCATGGCAGC
* * * *
91392453 GTGACATG-AAATGAATATGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAA
1 CTGATATGAAAATG--TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAGTAA
* * *
91392517 GACCATAGTTGAAAGACACTATGGCA
64 GACCATGGTTGAAAGATACCATGGCA
91392543 TCATGTCAAA
Statistics
Matches: 159, Mismatches: 20, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
90 3 0.02
91 82 0.52
92 74 0.47
ACGTcount: A:0.40, C:0.16, G:0.24, T:0.21
Consensus pattern (91 bp):
CTGATATGAAAATGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAGTAAGA
CCATGGTTGAAAGATACCATGGCAGC
Found at i:91392558 original size:137 final size:136
Alignment explanation
Indices: 91392285--91392565 Score: 361
Period size: 137 Copynumber: 2.1 Consensus size: 136
91392275 ATGAAATGTG
* **
91392285 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAACGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAACGAATAAGACCATGGTTGAAAGA
* * * * *
91392350 TACCATGGCACCTGATATGAAACATGTAAGACCATGGTTGAAAGATACCATGGCAACATGACGGG
66 TACCATGGCACATGACATGAAACATGTAAGACCATAGTTGAAAGACACCATGGCAACATGAC-GA
91392415 AAATAAA
130 AAATAAA
* * * *
91392422 TAAGACCATGGTTGAAAGATACCATGGCAGCGTGACATGAAATGAATATGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAACGAATAAGACCATGGTTGAAAGA
* * *
91392487 TACCATGGCAACATGACA-GAAA-ATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATGTC
66 TACCATGGC-ACATGACATGAAACAT--GTAAGACCATAGTTGAAAGACACCATGGCAACATGAC
91392550 -AAAGATAAA
128 GAAA-ATAAA
91392559 TAAGACC
1 TAAGACC
91392566 GTGGATGGGA
Statistics
Matches: 125, Mismatches: 15, Indels: 8
0.84 0.10 0.05
Matches are distributed among these distances:
136 4 0.03
137 83 0.66
138 38 0.30
ACGTcount: A:0.41, C:0.16, G:0.23, T:0.20
Consensus pattern (136 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAACGAATAAGACCATGGTTGAAAGA
TACCATGGCACATGACATGAAACATGTAAGACCATAGTTGAAAGACACCATGGCAACATGACGAA
AATAAA
Found at i:91396722 original size:27 final size:27
Alignment explanation
Indices: 91396691--91396868 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
91396681 TAAATTGTAC
91396691 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
91396718 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
91396744 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
91396772 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
91396800 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
91396827 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
91396854 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
91396869 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:91396805 original size:82 final size:81
Alignment explanation
Indices: 91396692--91396847 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
91396682 AAATTGTACA
* *
91396692 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
91396756 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
91396773 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
91396838 TGCGAGTTGA
65 TGCGAATTGA
91396848 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:91396859 original size:82 final size:81
Alignment explanation
Indices: 91396688--91396868 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
91396678 GATTAAATTG
* *
91396688 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
91396753 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
91396769 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
91396833 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
91396851 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
91396869 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:91404912 original size:27 final size:27
Alignment explanation
Indices: 91404881--91405058 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
91404871 TAAATTGTAC
91404881 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
91404908 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
91404934 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
91404962 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
91404990 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
91405017 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
91405044 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
91405059 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:91404995 original size:82 final size:81
Alignment explanation
Indices: 91404882--91405037 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
91404872 AAATTGTACA
* *
91404882 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
91404946 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
91404963 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
91405028 TGCGAGTTGA
65 TGCGAATTGA
91405038 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:91405049 original size:82 final size:81
Alignment explanation
Indices: 91404878--91405058 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
91404868 GATTAAATTG
* *
91404878 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
91404943 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
91404959 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
91405023 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
91405041 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
91405059 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:91436040 original size:12 final size:12
Alignment explanation
Indices: 91436023--91436049 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
91436013 ATTCCGAAGT
91436023 ATATATATATAC
1 ATATATATATAC
91436035 ATATATATATAC
1 ATATATATATAC
91436047 ATA
1 ATA
91436050 AGTATGCCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAC
Found at i:91436568 original size:27 final size:27
Alignment explanation
Indices: 91436537--91436714 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
91436527 TAAATTGTAC
91436537 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
91436564 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
91436590 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
91436618 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
91436646 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
91436673 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
91436700 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
91436715 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:91436651 original size:82 final size:81
Alignment explanation
Indices: 91436538--91436693 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
91436528 AAATTGTACA
* *
91436538 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
91436602 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
91436619 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
91436684 TGCGAGTTGA
65 TGCGAATTGA
91436694 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:91436705 original size:82 final size:81
Alignment explanation
Indices: 91436534--91436714 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
91436524 GATTAAATTG
* *
91436534 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
91436599 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
91436615 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
91436679 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
91436697 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
91436715 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:91438228 original size:7 final size:7
Alignment explanation
Indices: 91438218--91438316 Score: 198
Period size: 7 Copynumber: 14.1 Consensus size: 7
91438208 CAGGAGTCAT
91438218 CCCTAAA
1 CCCTAAA
91438225 CCCTAAA
1 CCCTAAA
91438232 CCCTAAA
1 CCCTAAA
91438239 CCCTAAA
1 CCCTAAA
91438246 CCCTAAA
1 CCCTAAA
91438253 CCCTAAA
1 CCCTAAA
91438260 CCCTAAA
1 CCCTAAA
91438267 CCCTAAA
1 CCCTAAA
91438274 CCCTAAA
1 CCCTAAA
91438281 CCCTAAA
1 CCCTAAA
91438288 CCCTAAA
1 CCCTAAA
91438295 CCCTAAA
1 CCCTAAA
91438302 CCCTAAA
1 CCCTAAA
91438309 CCCTAAA
1 CCCTAAA
91438316 C
1 C
91438317 TTATATACAC
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 92 1.00
ACGTcount: A:0.42, C:0.43, G:0.00, T:0.14
Consensus pattern (7 bp):
CCCTAAA
Found at i:91439502 original size:43 final size:43
Alignment explanation
Indices: 91439455--91439591 Score: 147
Period size: 43 Copynumber: 3.2 Consensus size: 43
91439445 TCCCGGACGT
* *
91439455 GGTCTTACATGTAAATCAATATCGATGCCTCTGTCCCAGACAG
1 GGTCTTACATGTAAATCAATATCGATGCCTATGTCCCAGACAC
* *
91439498 GGTCTTACATG-AAATCAGATA-CGATGCCGATGTCCCAGACAT
1 GGTCTTACATGTAAATCA-ATATCGATGCCTATGTCCCAGACAC
* * * *
91439540 AGTCTTATATGTAAATCTCAAT-TC-AAGCCTGTGTCCCAGACAC
1 GGTCTTACATGTAAA--TCAATATCGATGCCTATGTCCCAGACAC
91439583 GGTCTTACA
1 GGTCTTACA
91439592 CGATGTCTCA
Statistics
Matches: 78, Mismatches: 11, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
42 33 0.42
43 39 0.50
44 3 0.04
45 3 0.04
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (43 bp):
GGTCTTACATGTAAATCAATATCGATGCCTATGTCCCAGACAC
Found at i:91439532 original size:42 final size:43
Alignment explanation
Indices: 91439436--91439591 Score: 144
Period size: 43 Copynumber: 3.7 Consensus size: 43
91439426 AACAAGTACA
* *
91439436 ATGCCGACGTCCCGGAC-GTGGTCTTACATGTAAATCAATATCG
1 ATGCCGATGTCCCAGACAG-GGTCTTACATGTAAATCAATATCG
**
91439479 ATGCCTCTGTCCCAGACAGGGTCTTACATG-AAATCAGATA-CG
1 ATGCCGATGTCCCAGACAGGGTCTTACATGTAAATCA-ATATCG
** *
91439521 ATGCCGATGTCCCAGACATAGTCTTATATGTAAATCTCAAT-TC-
1 ATGCCGATGTCCCAGACAGGGTCTTACATGTAAA--TCAATATCG
* *
91439564 AAGCCTG-TGTCCCAGACACGGTCTTACA
1 ATGCC-GATGTCCCAGACAGGGTCTTACA
91439592 CGATGTCTCA
Statistics
Matches: 93, Mismatches: 13, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
42 33 0.35
43 52 0.56
44 5 0.05
45 3 0.03
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (43 bp):
ATGCCGATGTCCCAGACAGGGTCTTACATGTAAATCAATATCG
Found at i:91439579 original size:85 final size:85
Alignment explanation
Indices: 91439436--91439591 Score: 208
Period size: 85 Copynumber: 1.8 Consensus size: 85
91439426 AACAAGTACA
* * * * *
91439436 ATGCCGACGTCCCGGACGTGGTCTTACATGTAAATCAATATCGATGCCTCTGTCCCAGACAGGGT
1 ATGCCGACGTCCCAGACATAGTCTTACATGTAAATCAATATCGAAGCCTCTGTCCCAGACACGGT
91439501 CTTACATGAAATCAGATACG
66 CTTACATGAAATCAGATACG
* * *
91439521 ATGCCGATGTCCCAGACATAGTCTTATATGTAAATCTCAAT-TC-AAGCCTGTGTCCCAGACACG
1 ATGCCGACGTCCCAGACATAGTCTTACATGTAAA--TCAATATCGAAGCCTCTGTCCCAGACACG
91439584 GTCTTACA
64 GTCTTACA
91439592 CGATGTCTCA
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
85 54 0.89
86 2 0.03
87 5 0.08
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (85 bp):
ATGCCGACGTCCCAGACATAGTCTTACATGTAAATCAATATCGAAGCCTCTGTCCCAGACACGGT
CTTACATGAAATCAGATACG
Found at i:91441836 original size:49 final size:50
Alignment explanation
Indices: 91441742--91441864 Score: 146
Period size: 49 Copynumber: 2.5 Consensus size: 50
91441732 TAGTTATCTG
* * *
91441742 CAAATCAATGGTGGCTTGTCCAC-AAAATATATCAGTGGCAATATATCTA
1 CAAATCAGTGGTGGCTTGTCCACAAAAATATATCAATGGCAATATATATA
* * *
91441791 CAAAT-TGTGGTGGCTTGTCCACAAAAATATATTAATGG-AAGTATATATG
1 CAAATCAGTGGTGGCTTGTCCACAAAAATATATCAATGGCAA-TATATATA
*
91441840 CATATCAGTGGTGGCTTG-CCACAAA
1 CAAATCAGTGGTGGCTTGTCCACAAA
91441865 TGGTGTTTCA
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
48 17 0.27
49 35 0.56
50 11 0.17
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.29
Consensus pattern (50 bp):
CAAATCAGTGGTGGCTTGTCCACAAAAATATATCAATGGCAATATATATA
Found at i:91455152 original size:17 final size:18
Alignment explanation
Indices: 91455130--91455163 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
91455120 CTATGGAATA
91455130 TTTTTTTTTGTA-TTTTC
1 TTTTTTTTTGTACTTTTC
91455147 TTTTTTTTTGTACTTTT
1 TTTTTTTTTGTACTTTT
91455164 TTGATCACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.06, C:0.06, G:0.06, T:0.82
Consensus pattern (18 bp):
TTTTTTTTTGTACTTTTC
Found at i:91458032 original size:27 final size:29
Alignment explanation
Indices: 91457984--91458062 Score: 83
Period size: 30 Copynumber: 2.8 Consensus size: 29
91457974 AAAAATTAAA
* *
91457984 AATATGTTTATATGTTTT-AAATAA-CTTT
1 AATACGTTTTTAT-TTTTAAAATAATCTTT
*
91458012 AATA-GTTTTTATTTTTAAAATAATTTTT
1 AATACGTTTTTATTTTTAAAATAATCTTT
*
91458040 AATAACTTTTTTATTTTTAAAAT
1 AAT-ACGTTTTTATTTTTAAAAT
91458063 TTTAAAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
26 4 0.09
27 13 0.30
28 10 0.23
29 1 0.02
30 16 0.36
ACGTcount: A:0.37, C:0.03, G:0.04, T:0.57
Consensus pattern (29 bp):
AATACGTTTTTATTTTTAAAATAATCTTT
Found at i:91462713 original size:3 final size:3
Alignment explanation
Indices: 91462705--91462731 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
91462695 GCGGGTGGTA
91462705 GAT GAT GAT GAT GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT
91462732 AATCAGAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
GAT
Found at i:91464929 original size:75 final size:77
Alignment explanation
Indices: 91464844--91464985 Score: 216
Period size: 78 Copynumber: 1.9 Consensus size: 77
91464834 AAAGGAAAAC
91464844 TAGGATTATTCCCTTA-T-TAATAGAGAAGACAAATGGAAAGTTAGAAAAAGAAATTATATTCTT
1 TAGGATTATTCCCTTATTATAATAGAGAAGACAAATGGAAAGTTAGAAAAAGAAATTATATTCTT
91464907 TCCAAAAGAATA
66 TCCAAAAGAATA
* * * **
91464919 TAGGATTATTCCTTTATTAATAATAGAGAAGGCAAATGGAAAGTTAGAACAAGGGATTATATTCT
1 TAGGATTATTCCCTTATT-ATAATAGAGAAGACAAATGGAAAGTTAGAAAAAGAAATTATATTCT
91464984 TT
65 TT
91464986 TTAAAATAAT
Statistics
Matches: 59, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
75 15 0.25
76 1 0.02
78 43 0.73
ACGTcount: A:0.43, C:0.08, G:0.17, T:0.32
Consensus pattern (77 bp):
TAGGATTATTCCCTTATTATAATAGAGAAGACAAATGGAAAGTTAGAAAAAGAAATTATATTCTT
TCCAAAAGAATA
Found at i:91465106 original size:65 final size:65
Alignment explanation
Indices: 91465032--91465242 Score: 164
Period size: 65 Copynumber: 3.2 Consensus size: 65
91465022 GACTGAAATT
91465032 AATTAATATATATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTATATGAATCA
1 AATTAATATATATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTATATGAATCA
* * * *** * * *
91465097 AATTCATATATAATTATATT-CT---TTCCAAAAGAATAT-TA-ATTTCCATGTCTTTTATATTT
1 AATTAATATATATTTATATTAATAAATTCGGTAA-AATATATACAATT--A-ATATTTTATA---
* *
91465156 TGACTGA
59 TGAATCA
*
91465163 AATTAAGTAATATATATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGA
1 AA-T---TAATATATATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTATATGA
91465228 ATCA
62 ATCA
*
91465232 AATTCATATAT
1 AATTAATATAT
91465243 TAACTATATT
Statistics
Matches: 105, Mismatches: 24, Indels: 34
0.64 0.15 0.21
Matches are distributed among these distances:
60 3 0.03
61 7 0.07
62 6 0.06
63 8 0.08
64 1 0.01
65 25 0.24
66 7 0.07
67 1 0.01
68 1 0.01
69 7 0.07
70 15 0.14
71 1 0.01
72 7 0.07
73 6 0.06
74 7 0.07
75 3 0.03
ACGTcount: A:0.43, C:0.07, G:0.06, T:0.44
Consensus pattern (65 bp):
AATTAATATATATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTATATGAATCA
Found at i:91465379 original size:138 final size:136
Alignment explanation
Indices: 91464974--91465389 Score: 674
Period size: 135 Copynumber: 3.1 Consensus size: 136
91464964 AGAACAAGGG
** *
91464974 ATTATATTCTTTTTAAAATAATATTAATTTCCATGTCTTTTATATTTTGACTGAAATTAATTAAT
1 ATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACTGAAATTAATTAAT
*
91465039 ATATATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTATATGAATCAAATTCAT
66 ATATATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATTCAT
91465104 ATA-TA
131 ATATTA
*
91465109 ATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACTGAAATTAAGTAAT
1 ATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACTGAAATTAATTAAT
91465174 ATATATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATTCAT
66 ATATATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATTCAT
91465239 ATATTA
131 ATATTA
* *
91465245 ACTATATTCTTTCCAAAAGAATTTTAATTTCCATGTCTTTTATATTTTGA-TAGAAATTAATTAA
1 ATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACT-GAAATTAATTAA
* * * ** *
91465309 AACAACTGTTTATATTAATAAATTCAATAAAATATATACAACTAATATTTTGTATGAATCAAATT
65 TA-TA-TATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
91465374 CATATATTA
128 CATATATTA
91465383 ATTATAT
1 ATTATAT
91465390 CTACGTTCTC
Statistics
Matches: 262, Mismatches: 15, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
135 129 0.49
136 62 0.24
137 1 0.00
138 70 0.27
ACGTcount: A:0.41, C:0.08, G:0.05, T:0.45
Consensus pattern (136 bp):
ATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACTGAAATTAATTAAT
ATATATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATTCAT
ATATTA
Found at i:91468250 original size:41 final size:41
Alignment explanation
Indices: 91468193--91468280 Score: 158
Period size: 41 Copynumber: 2.1 Consensus size: 41
91468183 GTTCTGTTGT
*
91468193 TGTTCTCAGATTTCTCTGAGTTCTATTCTTCTACCGCTTCC
1 TGTTCTCAGATTTCTCTGAATTCTATTCTTCTACCGCTTCC
91468234 TGTTCTCAGATTTCTCTGAATTCTATTCTTCTACCGCTTCC
1 TGTTCTCAGATTTCTCTGAATTCTATTCTTCTACCGCTTCC
*
91468275 TTTTCT
1 TGTTCT
91468281 ATAGACAAAC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 45 1.00
ACGTcount: A:0.12, C:0.28, G:0.10, T:0.49
Consensus pattern (41 bp):
TGTTCTCAGATTTCTCTGAATTCTATTCTTCTACCGCTTCC
Found at i:91471934 original size:46 final size:46
Alignment explanation
Indices: 91471884--91472101 Score: 382
Period size: 46 Copynumber: 4.7 Consensus size: 46
91471874 TGGTTGAGCA
*
91471884 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
91471930 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
91471976 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
91472022 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
91472068 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
91472102 GGGGCGGGTT
Statistics
Matches: 169, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 169 1.00
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:91484702 original size:48 final size:47
Alignment explanation
Indices: 91484549--91484717 Score: 165
Period size: 48 Copynumber: 3.7 Consensus size: 47
91484539 AGATCCCGCA
91484549 TAAGACCATATCTGGGATATGGCATCTGCATCG-GTTGTGTTAT-CC-TG
1 TAAGACCATATCTGGGATATGGCAT-TGCATCGAGTTGTG--ATCCCATG
* * *
91484596 TAAGACCATATCTGGGATATGACGTTG-AT--A--TGAGATCCCATG
1 TAAGACCATATCTGGGATATGGCATTGCATCGAGTTGTGATCCCATG
* * * *
91484638 TAAGACCATGTTTGGGACATGGCATTGGCATCGAGTTGTGATCCCAAG
1 TAAGACCATATCTGGGATATGGCATT-GCATCGAGTTGTGATCCCATG
*
91484686 TAAGACCATATCTGGGATATGGCTTTAGCATC
1 TAAGACCATATCTGGGATATGGCATT-GCATC
91484718 TTACTATGTG
Statistics
Matches: 98, Mismatches: 15, Indels: 17
0.75 0.12 0.13
Matches are distributed among these distances:
40 2 0.02
41 2 0.02
42 26 0.27
43 1 0.01
44 2 0.02
45 2 0.02
46 3 0.03
47 23 0.23
48 37 0.38
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.30
Consensus pattern (47 bp):
TAAGACCATATCTGGGATATGGCATTGCATCGAGTTGTGATCCCATG
Found at i:91486994 original size:93 final size:93
Alignment explanation
Indices: 91486887--91487057 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
91486877 GCCCCTAAGT
* *
91486887 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
91486952 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
91486980 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
91487045 CGAGTTCGGATGC
66 CGAGTTCGGATGC
91487058 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:91487054 original size:46 final size:46
Alignment explanation
Indices: 91486882--91487054 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
91486872 AACCCGCCCC
* * *
91486882 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
91486928 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
91486976 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
91487021 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
91487055 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:91487511 original size:30 final size:30
Alignment explanation
Indices: 91487477--91487536 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
91487467 ATTTAATACG
91487477 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
91487507 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
91487537 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:91494070 original size:19 final size:20
Alignment explanation
Indices: 91494046--91494083 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
91494036 GGTACCACCA
91494046 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
91494065 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
91494084 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:91494796 original size:30 final size:30
Alignment explanation
Indices: 91494762--91494821 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
91494752 ATTTAATACG
91494762 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
91494792 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
91494822 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:91503963 original size:21 final size:20
Alignment explanation
Indices: 91503933--91503976 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
91503923 GCAACCAAAG
* * *
91503933 CATGCTATTTCATACACATTT
1 CATGCCATTT-ATAAACAATT
91503954 CATGCCATTTATAAACAATT
1 CATGCCATTTATAAACAATT
91503974 CAT
1 CAT
91503977 TCAACCCCTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.34, C:0.23, G:0.05, T:0.39
Consensus pattern (20 bp):
CATGCCATTTATAAACAATT
Found at i:91504878 original size:43 final size:39
Alignment explanation
Indices: 91504826--91504937 Score: 108
Period size: 34 Copynumber: 2.9 Consensus size: 39
91504816 ATGTTATCAC
*
91504826 ATATCGATGCCAATGTCCTAGACATGGTCTTACACTAAATCA
1 ATAT-GATGCCAATGTCCTAGACATGGTCTTACACT--AGCA
* * *
91504868 TATAATGATGCCAATGTCCCAAACATGG---TA-A-TCGCA
1 -AT-ATGATGCCAATGTCCTAGACATGGTCTTACACTAGCA
91504904 ATATGATGCCAATGTCCTAGACATGGTCTTACAC
1 ATATGATGCCAATGTCCTAGACATGGTCTTACAC
91504938 ATAATCACGT
Statistics
Matches: 57, Mismatches: 6, Indels: 16
0.72 0.08 0.20
Matches are distributed among these distances:
34 22 0.39
35 2 0.04
36 2 0.04
37 2 0.04
38 2 0.04
39 1 0.02
40 2 0.04
43 22 0.39
44 2 0.04
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (39 bp):
ATATGATGCCAATGTCCTAGACATGGTCTTACACTAGCA
Found at i:91506591 original size:12 final size:12
Alignment explanation
Indices: 91506574--91506604 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
91506564 GTTGAAAATT
91506574 TTGAAAGCTAAG
1 TTGAAAGCTAAG
*
91506586 TTGAAAGCTCAG
1 TTGAAAGCTAAG
91506598 TTGAAAG
1 TTGAAAG
91506605 AGTGAACTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.39, C:0.10, G:0.26, T:0.26
Consensus pattern (12 bp):
TTGAAAGCTAAG
Found at i:91519820 original size:28 final size:28
Alignment explanation
Indices: 91519780--91519849 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
91519770 ATAGTAAGTC
*
91519780 CGCACACTTAGTGCT-TAATAATCAAACT
1 CGCACACTTAGTGCTAT-ACAATCAAACT
*
91519808 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
91519836 CGCACACTTAGTGC
1 CGCACACTTAGTGC
91519850 CAATCTCATT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 38 0.97
29 1 0.03
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:91523481 original size:30 final size:30
Alignment explanation
Indices: 91523447--91523507 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
91523437 TCCTTAACTC
91523447 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
91523477 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
91523507 A
1 A
91523508 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:91534884 original size:134 final size:134
Alignment explanation
Indices: 91534623--91535039 Score: 746
Period size: 134 Copynumber: 3.1 Consensus size: 134
91534613 TTAGTTTACC
* * **
91534623 AAATTACTGAAATACCC-CTAGTTGTAAAATTACCAAAGTACCCTTGATTTATAAAATTACCCAA
1 AAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCCAA
91534687 ATATCCTCGATTTGTAAAATTACCAAATACCCTCAGTTTGCAAAATTACTGAAATAACCTCGATT
66 ATATCCTCGATTTGTAAAATTACCAAATACCCTCAGTTTGCAAAATTACTGAAATAACCTCGATT
91534752 TGTA
131 TGTA
91534756 AAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCCAA
1 AAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCCAA
91534821 ATATCCTCGATTTGTAAAATTACCAAATACCCTCAGTTTGCAAAATTACTGAAATAACCTCGATT
66 ATATCCTCGATTTGTAAAATTACCAAATACCCTCAGTTTGCAAAATTACTGAAATAACCTCGATT
91534886 TGTA
131 TGTA
91534890 AAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCCAA
1 AAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCCAA
* * *
91534955 ATATCCTCGATTTGTAAAATTACCGAAATACCTTCAGTTTGCAAAATTACTGAAATACCCTTGAT
66 ATATCCTCGATTTGTAAAATTACC-AAATACCCTCAGTTTGCAAAATTACTGAAATAACCTCGAT
*
91535020 TTATA
130 TTGTA
91535025 AAATTACTGAAATAC
1 AAATTACTGAAATAC
91535040 TCCTGTAAGA
Statistics
Matches: 274, Mismatches: 8, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
133 17 0.06
134 201 0.73
135 56 0.20
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (134 bp):
AAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCCAA
ATATCCTCGATTTGTAAAATTACCAAATACCCTCAGTTTGCAAAATTACTGAAATAACCTCGATT
TGTA
Found at i:91535032 original size:27 final size:27
Alignment explanation
Indices: 91534623--91535039 Score: 422
Period size: 27 Copynumber: 15.6 Consensus size: 27
91534613 TTAGTTTACC
* * *
91534623 AAATTACTGAAATACCC-CTAGTTGTA
1 AAATTACTCAAATACCCTCGATTTGTA
* *
91534649 AAATTAC-CAAAGTACCCTTGATTTATA
1 AAATTACTCAAA-TACCCTCGATTTGTA
* *
91534676 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACTCAAATACCCTCGATTTGTA
*
91534703 AAATTAC-CAAATACCCTC-AGTTTGCA
1 AAATTACTCAAATACCCTCGA-TTTGTA
* *
91534729 AAATTACTGAAATAACCTCGATTTGTA
1 AAATTACTCAAATACCCTCGATTTGTA
* *
91534756 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACTCAAATACCCTCGATTTGTA
* *
91534783 AAATTAC-CAAAGTACCCCCGATTTATA
1 AAATTACTCAAA-TACCCTCGATTTGTA
* *
91534810 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACTCAAATACCCTCGATTTGTA
*
91534837 AAATTAC-CAAATACCCTC-AGTTTGCA
1 AAATTACTCAAATACCCTCGA-TTTGTA
* *
91534863 AAATTACTGAAATAACCTCGATTTGTA
1 AAATTACTCAAATACCCTCGATTTGTA
* *
91534890 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACTCAAATACCCTCGATTTGTA
* *
91534917 AAATTAC-CAAAGTACCCCCGATTTATA
1 AAATTACTCAAA-TACCCTCGATTTGTA
* *
91534944 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACTCAAATACCCTCGATTTGTA
* *
91534971 AAATTAC-CGAAATACCTTC-AGTTTGCA
1 AAATTACTC-AAATACCCTCGA-TTTGTA
* * *
91534998 AAATTACTGAAATACCCTTGATTTATA
1 AAATTACTCAAATACCCTCGATTTGTA
*
91535025 AAATTACTGAAATAC
1 AAATTACTCAAATAC
91535040 TCCTGTAAGA
Statistics
Matches: 330, Mismatches: 44, Indels: 33
0.81 0.11 0.08
Matches are distributed among these distances:
25 5 0.02
26 64 0.19
27 246 0.75
28 15 0.05
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACTCAAATACCCTCGATTTGTA
Found at i:91535175 original size:27 final size:27
Alignment explanation
Indices: 91534617--91535231 Score: 342
Period size: 27 Copynumber: 22.9 Consensus size: 27
91534607 AATACTTTAG
* * *
91534617 TTTACCAAATTACTGAAATACCC-CTA
1 TTTACAAAATTACCGAAATACCCTCGA
* ** *
91534643 GTTGTAAAATTACC-AAAGTACCCTTGA
1 TTTACAAAATTACCGAAA-TACCCTCGA
* * *
91534670 TTTATAAAATTACCCAAATATCCTCGA
1 TTTACAAAATTACCGAAATACCCTCGA
**
91534697 TTTGTAAAATTACC-AAATACCCTC-A
1 TTTACAAAATTACCGAAATACCCTCGA
* * *
91534722 GTTTGCAAAATTACTGAAATAACCTCGA
1 -TTTACAAAATTACCGAAATACCCTCGA
** *
91534750 TTTGTAAAATTACTGAAATACCCTCGA
1 TTTACAAAATTACCGAAATACCCTCGA
* ** *
91534777 CTTGTAAAATTACC-AAAGTACCCCCGA
1 TTTACAAAATTACCGAAA-TACCCTCGA
* * *
91534804 TTTATAAAATTACCCAAATATCCTCGA
1 TTTACAAAATTACCGAAATACCCTCGA
**
91534831 TTTGTAAAATTACC-AAATACCCTC-A
1 TTTACAAAATTACCGAAATACCCTCGA
* * *
91534856 GTTTGCAAAATTACTGAAATAACCTCGA
1 -TTTACAAAATTACCGAAATACCCTCGA
** *
91534884 TTTGTAAAATTACTGAAATACCCTCGA
1 TTTACAAAATTACCGAAATACCCTCGA
* ** *
91534911 CTTGTAAAATTACC-AAAGTACCCCCGA
1 TTTACAAAATTACCGAAA-TACCCTCGA
* * *
91534938 TTTATAAAATTACCCAAATATCCTCGA
1 TTTACAAAATTACCGAAATACCCTCGA
** *
91534965 TTTGTAAAATTACCGAAATACCTTC-A
1 TTTACAAAATTACCGAAATACCCTCGA
* * *
91534991 GTTTGCAAAATTACTGAAATACCCTTGA
1 -TTTACAAAATTACCGAAATACCCTCGA
* *
91535019 TTTATAAAATTACTGAAATACTCCT-G-
1 TTTACAAAATTACCGAAATAC-CCTCGA
* * **
91535045 -TAAGATAGAATTACC-ATTTTACCCTCGA
1 TTTACA-A-AATTACCGA-AATACCCTCGA
* * ***
91535073 TTTACAGAATTATCGTTTTACCCTCGA
1 TTTACAAAATTACCGAAATACCCTCGA
* * * *** *
91535100 TTTATAGAATTATCGTTTTACCCTCAA
1 TTTACAAAATTACCGAAATACCCTCGA
* * **
91535127 TTTACAGAATTAGC-ATTTTACCCTCGA
1 TTTACAAAATTACCGA-AATACCCTCGA
* * *
91535154 TTTACAAAATTACTGAAATACCCTTGG
1 TTTACAAAATTACCGAAATACCCTCGA
*
91535181 TTTACAAAATTACCAAAATACCC-CTGA
1 TTTACAAAATTACCGAAATACCCTC-GA
***
91535208 TTTGTGAAATTACCGAAATACCCT
1 TTTACAAAATTACCGAAATACCCT
91535232 TATAGGGTAG
Statistics
Matches: 482, Mismatches: 80, Indels: 52
0.79 0.13 0.08
Matches are distributed among these distances:
25 8 0.02
26 68 0.14
27 387 0.80
28 16 0.03
29 3 0.01
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.32
Consensus pattern (27 bp):
TTTACAAAATTACCGAAATACCCTCGA
Found at i:91535203 original size:54 final size:54
Alignment explanation
Indices: 91534623--91535231 Score: 393
Period size: 54 Copynumber: 11.3 Consensus size: 54
91534613 TTAGTTTACC
* * * *
91534623 AAATTACTGAAATACCC-CTAGTTGTAAAATTACC-AAAGTACCCTTGATTTATA
1 AAATTACTGAAATACCCTCGATTTATAAAATTACCGAAA-TACCCTCGATTTATA
** * * **
91534676 AAATTACCCAAATATCCTCGATTTGTAAAATTACC-AAATACCCTC-AGTTTGCA
1 AAATTACTGAAATACCCTCGATTTATAAAATTACCGAAATACCCTCGA-TTTATA
* * * * *
91534729 AAATTACTGAAATAACCTCGATTTGTAAAATTACTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGATTTATAAAATTACCGAAATACCCTCGATTTATA
* * * * *
91534783 AAATTAC-CAAAGTACCCCCGATTTATAAAATTACCCAAATATCCTCGATTTGTA
1 AAATTACTGAAA-TACCCTCGATTTATAAAATTACCGAAATACCCTCGATTTATA
* ** * * *
91534837 AAATTAC-CAAATACCCTC-AGTTTGCAAAATTACTGAAATAACCTCGATTTGTA
1 AAATTACTGAAATACCCTCGA-TTTATAAAATTACCGAAATACCCTCGATTTATA
* * *
91534890 AAATTACTGAAATACCCTCGACTTGTAAAATTACC-AAAGTACCCCCGATTTATA
1 AAATTACTGAAATACCCTCGATTTATAAAATTACCGAAA-TACCCTCGATTTATA
** * * * **
91534944 AAATTACCCAAATATCCTCGATTTGTAAAATTACCGAAATACCTTC-AGTTTGCA
1 AAATTACTGAAATACCCTCGATTTATAAAATTACCGAAATACCCTCGA-TTTATA
* * **
91534998 AAATTACTGAAATACCCTTGATTTATAAAATTACTGAAATACTCCT-G-TAAGATA
1 AAATTACTGAAATACCCTCGATTTATAAAATTACCGAAATAC-CCTCGAT-TTATA
* * ** * * * ***
91535052 GAATTAC-CATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTATA
1 AAATTACTGA-AATACCCTCGATTTATAAAATTACCGAAATACCCTCGATTTATA
* *** * * * * ** *
91535106 GAATTA-TCGTTTTACCCTCAATTTACAGAATTAGC-ATTTTACCCTCGATTTACA
1 AAATTACT-GAAATACCCTCGATTTATAAAATTACCGA-AATACCCTCGATTTATA
* * * * * *
91535160 AAATTACTGAAATACCCTTGGTTTACAAAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACTGAAATACCCTCGATTTATAAAATTACCGAAATACCCTC-GATTTATA
*
91535214 AAATTACCGAAATACCCT
1 AAATTACTGAAATACCCT
91535232 TATAGGGTAG
Statistics
Matches: 444, Mismatches: 89, Indels: 45
0.77 0.15 0.08
Matches are distributed among these distances:
52 2 0.00
53 109 0.25
54 323 0.73
55 10 0.02
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.32
Consensus pattern (54 bp):
AAATTACTGAAATACCCTCGATTTATAAAATTACCGAAATACCCTCGATTTATA
Found at i:91535245 original size:27 final size:27
Alignment explanation
Indices: 91535215--91535483 Score: 376
Period size: 27 Copynumber: 10.0 Consensus size: 27
91535205 TGATTTGTGA
* *
91535215 AATTACCGAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
91535242 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
91535269 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
91535296 AATTATTGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
91535323 AATTATTGCAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
91535350 AATTATCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
91535377 AATTACAGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
91535404 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
91535431 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
91535458 AATTACCGAGATACCCTTGTGGGGTA
1 AATTACCGAAATACCCCTGTAGGGTA
91535484 AAATGGTAAT
Statistics
Matches: 217, Mismatches: 25, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 217 1.00
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:91535502 original size:54 final size:52
Alignment explanation
Indices: 91535188--91535487 Score: 289
Period size: 54 Copynumber: 5.6 Consensus size: 52
91535178 TGGTTTACAA
* ** * * *
91535188 AATTACCAAAATACCCCTG-ATTTGTGAAATTACCGAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCCTGTA-GGGTAAAATTA-C-AAATACCCCTGTAGGGTAG
* * *
91535242 AATTACTGAAATACCCCTGTAGGGTAGAATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAAAATTA-C-AAATACCCCTGTAGGGTAG
** * * *
91535296 AATTATTGAAATACCCCTGTAAGGTAGAATTATTGC-AATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTA-AA--ATTACAAATACCCCTGTAGGGTAG
* * *
91535350 AATTATCAAAATACCCCTGTAGGGTAGAATTACAGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAAAATTACA--AATACCCCTGTAGGGTAG
*
91535404 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAAAATTA-C-AAATACCCCTGTAGGGTAG
* * *
91535458 AATTACCGAGATACCCTTGTGGGGTAAAAT
1 AATTACCGAAATACCCCTGTAGGGTAAAAT
91535488 GGTAATTTTA
Statistics
Matches: 211, Mismatches: 26, Indels: 18
0.83 0.10 0.07
Matches are distributed among these distances:
51 4 0.02
53 1 0.00
54 198 0.94
55 3 0.01
56 2 0.01
57 3 0.01
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (52 bp):
AATTACCGAAATACCCCTGTAGGGTAAAATTACAAATACCCCTGTAGGGTAG
Found at i:91535873 original size:22 final size:22
Alignment explanation
Indices: 91535840--91535898 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
91535830 CACGTTATCG
91535840 ATGGC-TCTGTGCCAACCTAAAT
1 ATGGCTTC-GTGCCAACCTAAAT
* * * *
91535862 ATGGCTTCGTGCCATCTTGACT
1 ATGGCTTCGTGCCAACCTAAAT
91535884 ATGGCTTCGTGCCAA
1 ATGGCTTCGTGCCAA
91535899 ACGTATTTAC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
22 29 0.94
23 2 0.06
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.31
Consensus pattern (22 bp):
ATGGCTTCGTGCCAACCTAAAT
Found at i:91536295 original size:6 final size:6
Alignment explanation
Indices: 91536286--91536376 Score: 62
Period size: 6 Copynumber: 14.8 Consensus size: 6
91536276 ATTTTGTTAC
* * *
91536286 CTGATA CTGATT CTGATT TTGATT CTG-TT ACCTGATA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* * *
91536335 CTAATT CTG-TCAC CTAATT CTGATT CTGATT CT-AGTT CTGAT
1 CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGA-TT CTGAT
91536377 AATGTTTCTT
Statistics
Matches: 66, Mismatches: 11, Indels: 16
0.71 0.12 0.17
Matches are distributed among these distances:
5 4 0.06
6 54 0.82
7 6 0.09
8 2 0.03
ACGTcount: A:0.21, C:0.19, G:0.14, T:0.46
Consensus pattern (6 bp):
CTGATT
Found at i:91536309 original size:31 final size:31
Alignment explanation
Indices: 91536271--91536365 Score: 136
Period size: 31 Copynumber: 3.1 Consensus size: 31
91536261 ATATTCTTAT
*
91536271 TTTTGATTTTGTTACCTGATACTGATTCTGA
1 TTTTGATTCTGTTACCTGATACTGATTCTGA
91536302 TTTTGATTCTGTTACCTGATACTGATTCTGA
1 TTTTGATTCTGTTACCTGATACTGATTCTGA
* * * * *
91536333 TTCTAATTCTGTCACCTAATTCTGATTCTGA
1 TTTTGATTCTGTTACCTGATACTGATTCTGA
91536364 TT
1 TT
91536366 CTAGTTCTGA
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 58 1.00
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (31 bp):
TTTTGATTCTGTTACCTGATACTGATTCTGA
Found at i:91538371 original size:46 final size:45
Alignment explanation
Indices: 91538321--91538496 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
91538311 TGTTTGGGCA
91538321 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
91538367 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
91538414 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
91538460 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
91538497 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:91538476 original size:93 final size:93
Alignment explanation
Indices: 91538317--91538488 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
91538307 AGGATGTTTG
* *
91538317 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
91538382 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
91538410 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
91538475 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
91538489 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:91539405 original size:23 final size:22
Alignment explanation
Indices: 91539377--91539423 Score: 67
Period size: 23 Copynumber: 2.1 Consensus size: 22
91539367 TTTTTCAAAG
*
91539377 ATAATTATAAGTCATGATTTAT
1 ATAATTAGAAGTCATGATTTAT
*
91539399 ATNAATTAGAAGTCATGGTTTAT
1 AT-AATTAGAAGTCATGATTTAT
91539422 AT
1 AT
91539424 GTACAGATTC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 2 0.09
23 20 0.91
ACGTcount: A:0.38, C:0.04, G:0.13, T:0.43
Consensus pattern (22 bp):
ATAATTAGAAGTCATGATTTAT
Found at i:91540411 original size:13 final size:13
Alignment explanation
Indices: 91540393--91540427 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
91540383 CTGTTTATGA
91540393 TGAAATCATAAAC
1 TGAAATCATAAAC
91540406 TGAAATCATAAAC
1 TGAAATCATAAAC
*
91540419 CGAAATCAT
1 TGAAATCAT
91540428 TTCTCATGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.51, C:0.17, G:0.09, T:0.23
Consensus pattern (13 bp):
TGAAATCATAAAC
Found at i:91540537 original size:28 final size:28
Alignment explanation
Indices: 91540505--91540577 Score: 85
Period size: 28 Copynumber: 2.6 Consensus size: 28
91540495 GCATCTTCGC
* * *
91540505 TATCTCGTACACTAAGTG-CCTTACTTAA
1 TATCTCGCACACTAAGTGTCATT-CTCAA
*
91540533 TATCTCGCACACCAAGTGTCATTCTCAA
1 TATCTCGCACACTAAGTGTCATTCTCAA
*
91540561 TATTTCGCACACTAAGT
1 TATCTCGCACACTAAGT
91540578 CCCACATATA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
28 35 0.92
29 3 0.08
ACGTcount: A:0.29, C:0.27, G:0.11, T:0.33
Consensus pattern (28 bp):
TATCTCGCACACTAAGTGTCATTCTCAA
Found at i:91541762 original size:28 final size:29
Alignment explanation
Indices: 91541730--91541800 Score: 92
Period size: 28 Copynumber: 2.5 Consensus size: 29
91541720 TATAAATTTG
*
91541730 TGGCATTTAGTGTGCGAAATATTGAG-AA
1 TGGCACTTAGTGTGCGAAATATTGAGTAA
* * *
91541758 TGGCACTTGGTGTGCGAGATATTTAGTAA
1 TGGCACTTAGTGTGCGAAATATTGAGTAA
91541787 -GGCACTTAGTGTGC
1 TGGCACTTAGTGTGC
91541801 AAGACAGCGA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 35 0.95
29 2 0.05
ACGTcount: A:0.25, C:0.11, G:0.31, T:0.32
Consensus pattern (29 bp):
TGGCACTTAGTGTGCGAAATATTGAGTAA
Found at i:91549653 original size:42 final size:43
Alignment explanation
Indices: 91549560--91549723 Score: 176
Period size: 43 Copynumber: 3.8 Consensus size: 43
91549550 AGTGCCAACA
* * *
91549560 TCCTAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTG
1 TCCTAGACGTGGTCTTACACGAAATCAAATATCGATGCCAATG
* *
91549603 TCCCAGACAG-GGTCTTACACGAAATCATATA-CGATGCCAATG
1 TCCTAGAC-GTGGTCTTACACGAAATCAAATATCGATGCCAATG
* *
91549645 TCCTAGACATGGTCTTACACGTAAATCACAA-ATCGATGCCAACG
1 TCCTAGACGTGGTCTTACACG-AAATCA-AATATCGATGCCAATG
*
91549689 T-CTGAGACGTGGTCTTACACGATAA-CACATATCGA
1 TCCT-AGACGTGGTCTTACACGA-AATCAAATATCGA
91549724 AATCCTATGT
Statistics
Matches: 102, Mismatches: 11, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
42 29 0.28
43 42 0.41
44 31 0.30
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (43 bp):
TCCTAGACGTGGTCTTACACGAAATCAAATATCGATGCCAATG
Found at i:91550187 original size:7 final size:7
Alignment explanation
Indices: 91550175--91550200 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
91550165 GTCCGTATTT
91550175 CAAAATA
1 CAAAATA
91550182 CAAAATA
1 CAAAATA
91550189 CAAAATA
1 CAAAATA
91550196 CAAAA
1 CAAAA
91550201 AATCTCATCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.73, C:0.15, G:0.00, T:0.12
Consensus pattern (7 bp):
CAAAATA
Found at i:91555017 original size:20 final size:21
Alignment explanation
Indices: 91554992--91555032 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
91554982 ATCTTGAAAT
91554992 AGGGC-ACACGCCCGTGTGAA
1 AGGGCAACACGCCCGTGTGAA
*
91555012 AGGGCAACATGCCCGTGTGAA
1 AGGGCAACACGCCCGTGTGAA
91555033 TTAAATTCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.27, C:0.27, G:0.34, T:0.12
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGAA
Found at i:91556064 original size:88 final size:88
Alignment explanation
Indices: 91555910--91556083 Score: 321
Period size: 88 Copynumber: 2.0 Consensus size: 88
91555900 TATATTGAGC
* *
91555910 TCATATCTCATACATTTCAAATAGGTACCTATACCACTCATAACATGGTTATACTTTTATCGTTT
1 TCATATCTCATACATTTCAAATAGGTACCTATACCACTCACAACATGGTTATACTTTTATCATTT
*
91555975 AACTTAAACTGTAACTCTCACTG
66 AACTTAAACTATAACTCTCACTG
91555998 TCATATCTCATACATTTCAAATAGGTACCTATACCACTCACAACATGGTTATACTTTTATCATTT
1 TCATATCTCATACATTTCAAATAGGTACCTATACCACTCACAACATGGTTATACTTTTATCATTT
91556063 AACTTAAACTATAACTCTCAC
66 AACTTAAACTATAACTCTCAC
91556084 CATTGAACCA
Statistics
Matches: 83, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
88 83 1.00
ACGTcount: A:0.33, C:0.24, G:0.06, T:0.37
Consensus pattern (88 bp):
TCATATCTCATACATTTCAAATAGGTACCTATACCACTCACAACATGGTTATACTTTTATCATTT
AACTTAAACTATAACTCTCACTG
Found at i:91560364 original size:13 final size:13
Alignment explanation
Indices: 91560346--91560389 Score: 58
Period size: 10 Copynumber: 3.5 Consensus size: 13
91560336 CAATTCAGTG
91560346 AAAAAAATTCGTA
1 AAAAAAATTCGTA
91560359 AAAAAAATT--T-
1 AAAAAAATTCGTA
91560369 AAAAAAATTCGTA
1 AAAAAAATTCGTA
91560382 CAAAAAAA
1 -AAAAAAA
91560390 AGAATATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
10 9 0.33
11 1 0.04
12 1 0.04
13 9 0.33
14 7 0.26
ACGTcount: A:0.68, C:0.07, G:0.05, T:0.20
Consensus pattern (13 bp):
AAAAAAATTCGTA
Found at i:91561536 original size:30 final size:30
Alignment explanation
Indices: 91561502--91561599 Score: 83
Period size: 30 Copynumber: 3.3 Consensus size: 30
91561492 AGCTCACTCC
*
91561502 TAGCTCACTTTCAACTCACGAGCTAAACCT
1 TAGCTCACTTTCAGCTCACGAGCTAAACCT
* * * * * *
91561532 TAGCTAAAC-TTCAGCTTAGGAGTTTAGCCT
1 TAGCT-CACTTTCAGCTCACGAGCTAAACCT
* *
91561562 CAGCTCAACTTT-AGCTCACGAGCTAAAGCT
1 TAGCTC-ACTTTCAGCTCACGAGCTAAACCT
91561592 TAGCTCAC
1 TAGCTCAC
91561600 GAGCTAAAGC
Statistics
Matches: 49, Mismatches: 16, Indels: 7
0.68 0.22 0.10
Matches are distributed among these distances:
29 2 0.04
30 43 0.88
31 4 0.08
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.28
Consensus pattern (30 bp):
TAGCTCACTTTCAGCTCACGAGCTAAACCT
Found at i:91561585 original size:19 final size:19
Alignment explanation
Indices: 91561572--91561617 Score: 92
Period size: 19 Copynumber: 2.4 Consensus size: 19
91561562 CAGCTCAACT
91561572 TTAGCTCACGAGCTAAAGC
1 TTAGCTCACGAGCTAAAGC
91561591 TTAGCTCACGAGCTAAAGC
1 TTAGCTCACGAGCTAAAGC
91561610 TTAGCTCA
1 TTAGCTCA
91561618 TTTTAGTATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (19 bp):
TTAGCTCACGAGCTAAAGC
Found at i:91563358 original size:11 final size:12
Alignment explanation
Indices: 91563306--91563350 Score: 83
Period size: 12 Copynumber: 3.8 Consensus size: 12
91563296 AAGAGGAAAT
91563306 TTGAAAAAAAAA
1 TTGAAAAAAAAA
91563318 TTGAAAAAAAAA
1 TTGAAAAAAAAA
91563330 TTGAAAAAAAAA
1 TTGAAAAAAAAA
91563342 TT-AAAAAAA
1 TTGAAAAAAA
91563351 TCGAAAAATC
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
11 7 0.21
12 26 0.79
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.18
Consensus pattern (12 bp):
TTGAAAAAAAAA
Found at i:91564285 original size:9 final size:10
Alignment explanation
Indices: 91564278--91564334 Score: 55
Period size: 11 Copynumber: 5.5 Consensus size: 10
91564268 AAGAGAAAAC
91564278 AAAGAAAAGA
1 AAAGAAAAGA
91564288 AAAGAAAAAGCA
1 AAAG-AAAAG-A
*
91564300 AAAGAAGA-A
1 AAAGAAAAGA
91564309 AAAGAAAATGA
1 AAAGAAAA-GA
91564320 AATA-AAAAGA
1 AA-AGAAAAGA
91564330 AAAGA
1 AAAGA
91564335 GAGGCAAGAG
Statistics
Matches: 39, Mismatches: 2, Indels: 12
0.74 0.04 0.23
Matches are distributed among these distances:
9 9 0.23
10 9 0.23
11 15 0.38
12 6 0.15
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.04
Consensus pattern (10 bp):
AAAGAAAAGA
Found at i:91564301 original size:21 final size:20
Alignment explanation
Indices: 91564267--91564334 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 20
91564257 ACATTCTTGT
91564267 AAAGAGAAAA-CAAAGAAAAGA
1 AAAGA-AAAAGCAAA-AAAAGA
*
91564288 AAAGAAAAAGCAAAAGAAGAA
1 AAAGAAAAAGCAAAAAAAG-A
* *
91564309 AAAGAAAATGAAATAAAAAGA
1 AAAGAAAAAGCAA-AAAAAGA
91564330 AAAGA
1 AAAGA
91564335 GAGGCAAGAG
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
20 8 0.20
21 27 0.68
22 5 0.12
ACGTcount: A:0.76, C:0.03, G:0.18, T:0.03
Consensus pattern (20 bp):
AAAGAAAAAGCAAAAAAAGA
Found at i:91564302 original size:6 final size:5
Alignment explanation
Indices: 91564278--91564334 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
91564268 AAGAGAAAAC
*
91564278 AAAGA AAAGA AAAGAA AAAGCA AAAGA AGA-A AAAGA AAATGA AATA-A
1 AAAGA AAAGA AAAG-A AAAG-A AAAGA AAAGA AAAGA AAA-GA AA-AGA
91564325 AAAGA AAAGA
1 AAAGA AAAGA
91564335 GAGGCAAGAG
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
4 4 0.09
5 25 0.57
6 14 0.32
7 1 0.02
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.04
Consensus pattern (5 bp):
AAAGA
Found at i:91564309 original size:15 final size:14
Alignment explanation
Indices: 91564278--91564334 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 14
91564268 AAGAGAAAAC
91564278 AAAGAAAAGAAAAGAA
1 AAAGAAAAG--AAGAA
91564294 AAAGCAAAAGAAGAA
1 AAAG-AAAAGAAGAA
*
91564309 AAAGAAAATGAAATAA
1 AAAGAAAA-G-AAGAA
91564325 AAAGAAAAGA
1 AAAGAAAAGA
91564335 GAGGCAAGAG
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
14 5 0.14
15 11 0.30
16 16 0.43
17 5 0.14
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.04
Consensus pattern (14 bp):
AAAGAAAAGAAGAA
Found at i:91564449 original size:30 final size:31
Alignment explanation
Indices: 91564415--91564496 Score: 96
Period size: 30 Copynumber: 2.7 Consensus size: 31
91564405 TATGAAAAGT
*
91564415 AAAAAGAAAAAGAAAAAGAAA-ATGAGATTG
1 AAAAAGAAAAAGAAAAAGAAATATGAGAGTG
* * *
91564445 AAAAAGAGAACG-AAAAGAAATTTGAGAGTG
1 AAAAAGAAAAAGAAAAAGAAATATGAGAGTG
* *
91564475 AAAAAGAAGATGAAAAAGAAAT
1 AAAAAGAAAAAGAAAAAGAAAT
91564497 TGAAACAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
29 8 0.19
30 26 0.60
31 9 0.21
ACGTcount: A:0.66, C:0.01, G:0.22, T:0.11
Consensus pattern (31 bp):
AAAAAGAAAAAGAAAAAGAAATATGAGAGTG
Found at i:91564469 original size:24 final size:24
Alignment explanation
Indices: 91564420--91564489 Score: 61
Period size: 24 Copynumber: 2.9 Consensus size: 24
91564410 AAAGTAAAAA
*
91564420 GAAAAAGAAAAAGAAAATGAGATT
1 GAAAAAGAAAAAGAAAATGAAATT
* *
91564444 GAAAAAGAGAACGAAAA-GAAATTT
1 GAAAAAGAAAAAGAAAATGAAA-TT
* ** *
91564468 GAGAGTGAAAAAGAAGATGAAA
1 GAAAAAGAAAAAGAAAATGAAA
91564490 AAGAAATTGA
Statistics
Matches: 35, Mismatches: 9, Indels: 3
0.74 0.19 0.06
Matches are distributed among these distances:
23 3 0.09
24 28 0.80
25 4 0.11
ACGTcount: A:0.63, C:0.01, G:0.24, T:0.11
Consensus pattern (24 bp):
GAAAAAGAAAAAGAAAATGAAATT
Found at i:91569682 original size:182 final size:182
Alignment explanation
Indices: 91569368--91569730 Score: 663
Period size: 182 Copynumber: 2.0 Consensus size: 182
91569358 TTGACTGTCG
* *
91569368 CGCCATCAACAAGACCATCGTCAAATATAGACATCACATTCCCTGCCTTGATGACATGCTTGATG
1 CGCCATCAACAAGACCATCGTCAAATATAGACATCACATTCCCTGCCTTGACGACATGCTTGACG
91569433 AACTTAGCGGAGCCCAACTCTTTTCAAAGATAGACTTAAAGAGTGGCTATCACCAAATTCGTATG
66 AACTTAGCGGAGCCCAACTCTTTTCAAAGATAGACTTAAAGAGTGGCTATCACCAAATTCGTATG
** *
91569498 CGAGAGGGCAAGACCATTGTCAAATATAGACATCACATTCCCTGCCTTGACA
131 CGAGAGAACAAGACCATCGTCAAATATAGACATCACATTCCCTGCCTTGACA
91569550 CGCCATCAACAAGACCATCGTCAAATATAGACATCACATTCCCTGCCTTGACGACATGCTTGACG
1 CGCCATCAACAAGACCATCGTCAAATATAGACATCACATTCCCTGCCTTGACGACATGCTTGACG
* *
91569615 AACTTAGCGGAGCCCAACTCTTTTCAAAGATATACTTAAAGAGTGGCTATCACCAAATTCTTATG
66 AACTTAGCGGAGCCCAACTCTTTTCAAAGATAGACTTAAAGAGTGGCTATCACCAAATTCGTATG
91569680 CGAGAGAACAAGACCATCGTCAAATATAGACATCACATTCCCTGCCTTGAC
131 CGAGAGAACAAGACCATCGTCAAATATAGACATCACATTCCCTGCCTTGAC
91569731 GACATGCTTG
Statistics
Matches: 174, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
182 174 1.00
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.24
Consensus pattern (182 bp):
CGCCATCAACAAGACCATCGTCAAATATAGACATCACATTCCCTGCCTTGACGACATGCTTGACG
AACTTAGCGGAGCCCAACTCTTTTCAAAGATAGACTTAAAGAGTGGCTATCACCAAATTCGTATG
CGAGAGAACAAGACCATCGTCAAATATAGACATCACATTCCCTGCCTTGACA
Found at i:91569792 original size:129 final size:129
Alignment explanation
Indices: 91569557--91569814 Score: 489
Period size: 129 Copynumber: 2.0 Consensus size: 129
91569547 ACACGCCATC
91569557 AACAAGACCATCGTCAAATATAGACATCACATTCCCTGCCTTGACGACATGCTTGACGAACTTAG
1 AACAAGACCATCGTCAAATATAGACATCACATTCCCTGCCTTGACGACATGCTTGACGAACTTAG
* * *
91569622 CGGAGCCCAACTCTTTTCAAAGATATACTTAAAGAGTGGCTATCACCAAATTCTTATGCGAGAG
66 CGGAGCCCAACTCTTTTCAAAGATAGACTTAAAGAGCGGCTATCACCAAATTCGTATGCGAGAG
91569686 AACAAGACCATCGTCAAATATAGACATCACATTCCCTGCCTTGACGACATGCTTGACGAACTTAG
1 AACAAGACCATCGTCAAATATAGACATCACATTCCCTGCCTTGACGACATGCTTGACGAACTTAG
91569751 CGGAGCCCAACTCTTTTCAAAGATAGACTTAAAGAGCGGCTATCACCAAATTCGTATGCGAGAG
66 CGGAGCCCAACTCTTTTCAAAGATAGACTTAAAGAGCGGCTATCACCAAATTCGTATGCGAGAG
91569815 GGAGACGAAT
Statistics
Matches: 126, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
129 126 1.00
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (129 bp):
AACAAGACCATCGTCAAATATAGACATCACATTCCCTGCCTTGACGACATGCTTGACGAACTTAG
CGGAGCCCAACTCTTTTCAAAGATAGACTTAAAGAGCGGCTATCACCAAATTCGTATGCGAGAG
Found at i:91575727 original size:29 final size:29
Alignment explanation
Indices: 91575681--91575743 Score: 92
Period size: 29 Copynumber: 2.2 Consensus size: 29
91575671 ATGAATCGGA
*
91575681 AGCTTTGGCAGTAAGTGTACGATTTAAACT
1 AGCTTTGGCACTAAGTGTACGATTT-AACT
*
91575711 AGCTTT-GCACTAAGTGTGCGATTTAACT
1 AGCTTTGGCACTAAGTGTACGATTTAACT
91575739 AGCTT
1 AGCTT
91575744 CGATTACTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
28 9 0.29
29 16 0.52
30 6 0.19
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Consensus pattern (29 bp):
AGCTTTGGCACTAAGTGTACGATTTAACT
Found at i:91578845 original size:44 final size:44
Alignment explanation
Indices: 91578797--91578884 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
91578787 AGATGTAAGA
91578797 ATGATAAATAGTTAGAGTTGAATCTAGTGATTTGAATGGGTTAT
1 ATGATAAATAGTTAGAGTTGAATCTAGTGATTTGAATGGGTTAT
*
91578841 ATGATGAATAGTTAGAGTTGAATCTAGTGATTTGAATGGGTTAT
1 ATGATAAATAGTTAGAGTTGAATCTAGTGATTTGAATGGGTTAT
91578885 CTACTGTGAT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.33, C:0.02, G:0.26, T:0.39
Consensus pattern (44 bp):
ATGATAAATAGTTAGAGTTGAATCTAGTGATTTGAATGGGTTAT
Found at i:91583054 original size:30 final size:29
Alignment explanation
Indices: 91583018--91583084 Score: 116
Period size: 30 Copynumber: 2.3 Consensus size: 29
91583008 ATGAATAGGA
91583018 AGCTTTGGCACTAAGTGTACGATTTAAACT
1 AGCTTTGGCACTAAGTGTACGATTT-AACT
*
91583048 AGCTTTGGCACTAAGTGTGCGATTTAACT
1 AGCTTTGGCACTAAGTGTACGATTTAACT
91583077 AGCTTTGG
1 AGCTTTGG
91583085 TTACTTGAGG
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
29 12 0.33
30 24 0.67
ACGTcount: A:0.25, C:0.16, G:0.24, T:0.34
Consensus pattern (29 bp):
AGCTTTGGCACTAAGTGTACGATTTAACT
Found at i:91583637 original size:30 final size:29
Alignment explanation
Indices: 91583601--91583667 Score: 116
Period size: 30 Copynumber: 2.3 Consensus size: 29
91583591 ATGAATAGGA
91583601 AGCTTTGGCACTAAGTGTACGATTTAAACT
1 AGCTTTGGCACTAAGTGTACGATTT-AACT
*
91583631 AGCTTTGGCACTAAGTGTGCGATTTAACT
1 AGCTTTGGCACTAAGTGTACGATTTAACT
91583660 AGCTTTGG
1 AGCTTTGG
91583668 TTACTTGAGG
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
29 12 0.33
30 24 0.67
ACGTcount: A:0.25, C:0.16, G:0.24, T:0.34
Consensus pattern (29 bp):
AGCTTTGGCACTAAGTGTACGATTTAACT
Found at i:91583932 original size:583 final size:583
Alignment explanation
Indices: 91582826--91583992 Score: 2334
Period size: 583 Copynumber: 2.0 Consensus size: 583
91582816 TACATTTAGA
91582826 TGAAGAAAGGAGGAATTTGGACTTAGATCGAGGAAAGTCGAAGGTTATCGAGTAGATAGTCTAAG
1 TGAAGAAAGGAGGAATTTGGACTTAGATCGAGGAAAGTCGAAGGTTATCGAGTAGATAGTCTAAG
91582891 TCGACAAATTTCGAGTACGAGGTAAGTTCGTACTTAAAATGTGATGTTAAGTAAGTTTTGATGCC
66 TCGACAAATTTCGAGTACGAGGTAAGTTCGTACTTAAAATGTGATGTTAAGTAAGTTTTGATGCC
91582956 TTTATTCTGCAGGGGTTGTATATAATTGAATTGGATAATATATAATATGGTGATGAATAGGAAGC
131 TTTATTCTGCAGGGGTTGTATATAATTGAATTGGATAATATATAATATGGTGATGAATAGGAAGC
91583021 TTTGGCACTAAGTGTACGATTTAAACTAGCTTTGGCACTAAGTGTGCGATTTAACTAGCTTTGGT
196 TTTGGCACTAAGTGTACGATTTAAACTAGCTTTGGCACTAAGTGTGCGATTTAACTAGCTTTGGT
91583086 TACTTGAGGCACTAAGTGTGCGATACCGACTTAGTCTCGGTTATTTGAGATGGCACTAAGTGTGC
261 TACTTGAGGCACTAAGTGTGCGATACCGACTTAGTCTCGGTTATTTGAGATGGCACTAAGTGTGC
91583151 GAAAATATTTAGCCTCGGCTAACCTTGTAGCACTAAGTGTGTAAACCGGCCCAGACGTTATGGCT
326 GAAAATATTTAGCCTCGGCTAACCTTGTAGCACTAAGTGTGTAAACCGGCCCAGACGTTATGGCT
91583216 AGATCTGACGTGTCACATGGACTTACGACTTAGTATTCATTCGCTGGTTTAAGTGATTGGGGTGG
391 AGATCTGACGTGTCACATGGACTTACGACTTAGTATTCATTCGCTGGTTTAAGTGATTGGGGTGG
91583281 TCTTTTTAAAAACAGCGGTTGAATGAAAAGCTGGTTTATCAATCTTTAGGTTATCCATTTGTTGT
456 TCTTTTTAAAAACAGCGGTTGAATGAAAAGCTGGTTTATCAATCTTTAGGTTATCCATTTGTTGT
91583346 GCTTGTTGAGTCTTGAAAACGTTCATTAATTTTGAAAATCCGCGCAGTCTAACACTAGCAGTT
521 GCTTGTTGAGTCTTGAAAACGTTCATTAATTTTGAAAATCCGCGCAGTCTAACACTAGCAGTT
91583409 TGAAGAAAGGAGGAATTTGGACTTAGATCGAGGAAAGTCGAAGGTTATCGAGTAGATAGTCTAAG
1 TGAAGAAAGGAGGAATTTGGACTTAGATCGAGGAAAGTCGAAGGTTATCGAGTAGATAGTCTAAG
91583474 TCGACAAATTTCGAGTACGAGGTAAGTTCGTACTTAAAATGTGATGTTAAGTAAGTTTTGATGCC
66 TCGACAAATTTCGAGTACGAGGTAAGTTCGTACTTAAAATGTGATGTTAAGTAAGTTTTGATGCC
91583539 TTTATTCTGCAGGGGTTGTATATAATTGAATTGGATAATATATAATATGGTGATGAATAGGAAGC
131 TTTATTCTGCAGGGGTTGTATATAATTGAATTGGATAATATATAATATGGTGATGAATAGGAAGC
91583604 TTTGGCACTAAGTGTACGATTTAAACTAGCTTTGGCACTAAGTGTGCGATTTAACTAGCTTTGGT
196 TTTGGCACTAAGTGTACGATTTAAACTAGCTTTGGCACTAAGTGTGCGATTTAACTAGCTTTGGT
91583669 TACTTGAGGCACTAAGTGTGCGATACCGACTTAGTCTCGGTTATTTGAGATGGCACTAAGTGTGC
261 TACTTGAGGCACTAAGTGTGCGATACCGACTTAGTCTCGGTTATTTGAGATGGCACTAAGTGTGC
91583734 GAAAATATTTAGCCTCGGCTAACCTTGTAGCACTAAGTGTGTAAACCGGCCCAGACGTTATGGCT
326 GAAAATATTTAGCCTCGGCTAACCTTGTAGCACTAAGTGTGTAAACCGGCCCAGACGTTATGGCT
91583799 AGATCTGACGTGTCACATGGACTTACGACTTAGTATTCATTCGCTGGTTTAAGTGATTGGGGTGG
391 AGATCTGACGTGTCACATGGACTTACGACTTAGTATTCATTCGCTGGTTTAAGTGATTGGGGTGG
91583864 TCTTTTTAAAAACAGCGGTTGAATGAAAAGCTGGTTTATCAATCTTTAGGTTATCCATTTGTTGT
456 TCTTTTTAAAAACAGCGGTTGAATGAAAAGCTGGTTTATCAATCTTTAGGTTATCCATTTGTTGT
91583929 GCTTGTTGAGTCTTGAAAACGTTCATTAATTTTGAAAATCCGCGCAGTCTAACACTAGCAGTT
521 GCTTGTTGAGTCTTGAAAACGTTCATTAATTTTGAAAATCCGCGCAGTCTAACACTAGCAGTT
91583992 T
1 T
91583993 CGTCATAGTA
Statistics
Matches: 584, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
583 584 1.00
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.33
Consensus pattern (583 bp):
TGAAGAAAGGAGGAATTTGGACTTAGATCGAGGAAAGTCGAAGGTTATCGAGTAGATAGTCTAAG
TCGACAAATTTCGAGTACGAGGTAAGTTCGTACTTAAAATGTGATGTTAAGTAAGTTTTGATGCC
TTTATTCTGCAGGGGTTGTATATAATTGAATTGGATAATATATAATATGGTGATGAATAGGAAGC
TTTGGCACTAAGTGTACGATTTAAACTAGCTTTGGCACTAAGTGTGCGATTTAACTAGCTTTGGT
TACTTGAGGCACTAAGTGTGCGATACCGACTTAGTCTCGGTTATTTGAGATGGCACTAAGTGTGC
GAAAATATTTAGCCTCGGCTAACCTTGTAGCACTAAGTGTGTAAACCGGCCCAGACGTTATGGCT
AGATCTGACGTGTCACATGGACTTACGACTTAGTATTCATTCGCTGGTTTAAGTGATTGGGGTGG
TCTTTTTAAAAACAGCGGTTGAATGAAAAGCTGGTTTATCAATCTTTAGGTTATCCATTTGTTGT
GCTTGTTGAGTCTTGAAAACGTTCATTAATTTTGAAAATCCGCGCAGTCTAACACTAGCAGTT
Found at i:91585332 original size:27 final size:27
Alignment explanation
Indices: 91585284--91585375 Score: 105
Period size: 27 Copynumber: 3.4 Consensus size: 27
91585274 GGGGCAAAAT
* * *
91585284 GGTAATTTTACCAC-ACAAGGGTATCTC
1 GGTAATTCTACC-CTACAGGGGTATTTC
* *
91585311 GGTAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
91585338 GGTAATTCTAACCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
91585365 GATAATTCTAC
1 GGTAATTCTAC
91585376 AACTTATCCA
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
26 1 0.02
27 53 0.98
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:91587472 original size:18 final size:19
Alignment explanation
Indices: 91587429--91587478 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 19
91587419 GGTCTTGCCA
* *
91587429 TTGTCCTTAGTCTTTGCCT
1 TTGTCCTTAGTCCTTCCCT
*
91587448 TAG-CCTTAG-CCTTCCCT
1 TTGTCCTTAGTCCTTCCCT
91587465 TTGTCCTT-GTCCTT
1 TTGTCCTTAGTCCTT
91587479 GCAGACCATC
Statistics
Matches: 25, Mismatches: 4, Indels: 5
0.74 0.12 0.15
Matches are distributed among these distances:
17 9 0.36
18 14 0.56
19 2 0.08
ACGTcount: A:0.06, C:0.32, G:0.14, T:0.48
Consensus pattern (19 bp):
TTGTCCTTAGTCCTTCCCT
Found at i:91591943 original size:18 final size:18
Alignment explanation
Indices: 91591920--91591954 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
91591910 ATTATCATAT
*
91591920 GTATATATATTTCTATGA
1 GTATATATATTTATATGA
91591938 GTATATATATTTATATG
1 GTATATATATTTATATG
91591955 TGCATAAATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.51
Consensus pattern (18 bp):
GTATATATATTTATATGA
Found at i:91592545 original size:207 final size:207
Alignment explanation
Indices: 91592190--91592601 Score: 770
Period size: 207 Copynumber: 2.0 Consensus size: 207
91592180 CTCAAATCAA
91592190 TAGGAAAAATTTTCATTGTCACAACCCGGTCTTCAGGTCTTCTTTCAGAACCTAATGCCCTTTAC
1 TAGGAAAAATTTTCATTGTCACAACCCGGTCTTCAGGTCTTCTTTCAGAACCTAATGCCCTTTAC
* *
91592255 GACAGGCGCTAACCGCTTTCTACTAGCTAAAGCAGCTCGGCTCGAACCCTTCTCATGGGATCGGC
66 GACAGGCGCTAACCGCTTTCTACTAGCTAAAGCAGCTCGGCTCGAACCCTTCTCATGGAATCAGC
91592320 TTACCTCACTTTCAAGCATCCACTGGATCAGAGATCTTTCTTCCTTCCCTCACCTGTCCCACGTG
131 TTACCTCACTTTCAAGCATCCACTGGATCAGAGATCTTTCTTCCTTCCCTCACCTGTCCCACGTG
91592385 CTCTAATCCTAG
196 CTCTAATCCTAG
* *
91592397 TAGGAAAAATTTTCATTGTCACATCCTGGTCTTCAGGTCTTCTTTCAGAACCTAATGCCCTTTAC
1 TAGGAAAAATTTTCATTGTCACAACCCGGTCTTCAGGTCTTCTTTCAGAACCTAATGCCCTTTAC
* *
91592462 GATAGGCGCTAACCGCTTTCTACTAGCTAAAGCAGCTCGGCTCGAACCTTTCTCATGGAATCAGC
66 GACAGGCGCTAACCGCTTTCTACTAGCTAAAGCAGCTCGGCTCGAACCCTTCTCATGGAATCAGC
91592527 TTACCTCACTTTCAAGCATCCACTGGATCAGAGATCTTTCTTCCTTCCCTCACCTGTCCCACGTG
131 TTACCTCACTTTCAAGCATCCACTGGATCAGAGATCTTTCTTCCTTCCCTCACCTGTCCCACGTG
91592592 CTCTAATCCT
196 CTCTAATCCT
91592602 CTGAGCTACA
Statistics
Matches: 199, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
207 199 1.00
ACGTcount: A:0.22, C:0.31, G:0.16, T:0.31
Consensus pattern (207 bp):
TAGGAAAAATTTTCATTGTCACAACCCGGTCTTCAGGTCTTCTTTCAGAACCTAATGCCCTTTAC
GACAGGCGCTAACCGCTTTCTACTAGCTAAAGCAGCTCGGCTCGAACCCTTCTCATGGAATCAGC
TTACCTCACTTTCAAGCATCCACTGGATCAGAGATCTTTCTTCCTTCCCTCACCTGTCCCACGTG
CTCTAATCCTAG
Found at i:91594033 original size:20 final size:20
Alignment explanation
Indices: 91594010--91594067 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
91594000 TAGCTCGTCC
* *
91594010 AGCTCACAACCAGCTCAGCA
1 AGCTCACATCCAGCTCAACA
**
91594030 AGCTCAGTTCCAGCTCAACA
1 AGCTCACATCCAGCTCAACA
*
91594050 AGTTCACATCCAGCTCAA
1 AGCTCACATCCAGCTCAA
91594068 TTCCATCTCA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.33, C:0.36, G:0.14, T:0.17
Consensus pattern (20 bp):
AGCTCACATCCAGCTCAACA
Found at i:91595673 original size:10 final size:10
Alignment explanation
Indices: 91595658--91595684 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
91595648 TATATATACA
91595658 AAAAAAATTC
1 AAAAAAATTC
91595668 AAAAAAATTC
1 AAAAAAATTC
91595678 AAAAAAA
1 AAAAAAA
91595685 AGGTGTTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.78, C:0.07, G:0.00, T:0.15
Consensus pattern (10 bp):
AAAAAAATTC
Found at i:91603739 original size:23 final size:23
Alignment explanation
Indices: 91603713--91603762 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
91603703 ACCCCATGCA
91603713 ATGCAACATA-ATATTATACATGG-
1 ATGCAACATACATA-TA-ACATGGC
91603736 ATGCAACATACATATAACATGGC
1 ATGCAACATACATATAACATGGC
91603759 ATGC
1 ATGC
91603763 TCAAATACAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.24
23 16 0.64
24 3 0.12
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.26
Consensus pattern (23 bp):
ATGCAACATACATATAACATGGC
Found at i:91603920 original size:54 final size:54
Alignment explanation
Indices: 91603850--91604030 Score: 254
Period size: 54 Copynumber: 3.4 Consensus size: 54
91603840 GGTATTTCGA
* *
91603850 TCATTTTATCATATAAGGGCAAAATTGTCATTTTATCACATAAGGGAAAAATCG
1 TCATTTTATCACATAAGGGCAAAATTGTCATTTTATCACATAAGGGTAAAATCG
* * * ** * *
91603904 TCATCTTATAACATAAGGGAAAAATCATCATTTTATCACATATGGGTAAAATTG
1 TCATTTTATCACATAAGGGCAAAATTGTCATTTTATCACATAAGGGTAAAATCG
* * *
91603958 TCATTTTATCACGTGAGGGCAAAATTGTCATTTTATCACATAAGGGTAAAATCA
1 TCATTTTATCACATAAGGGCAAAATTGTCATTTTATCACATAAGGGTAAAATCG
91604012 TCATTTTATCACATAAGGG
1 TCATTTTATCACATAAGGG
91604031 TTCAGGTACG
Statistics
Matches: 106, Mismatches: 21, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 106 1.00
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.34
Consensus pattern (54 bp):
TCATTTTATCACATAAGGGCAAAATTGTCATTTTATCACATAAGGGTAAAATCG
Found at i:91603988 original size:81 final size:81
Alignment explanation
Indices: 91603849--91604031 Score: 276
Period size: 81 Copynumber: 2.3 Consensus size: 81
91603839 GGGTATTTCG
* *
91603849 ATCATTTTATCATATAAGGGCAAAATTGTCATTTTATCACATAAGGGAAAAATCGTCATCTTATA
1 ATCATTTTATCACATAAGGGTAAAATTGTCATTTTATCACATAAGGGAAAAATCGTCATCTTATA
91603914 ACATAAGGGAAAAATC
66 ACATAAGGGAAAAATC
* * * * * * *
91603930 ATCATTTTATCACATATGGGTAAAATTGTCATTTTATCACGTGAGGGCAAAATTGTCATTTTATC
1 ATCATTTTATCACATAAGGGTAAAATTGTCATTTTATCACATAAGGGAAAAATCGTCATCTTATA
*
91603995 ACATAAGGGTAAAATC
66 ACATAAGGGAAAAATC
91604011 ATCATTTTATCACATAAGGGT
1 ATCATTTTATCACATAAGGGT
91604032 TCAGGTACGC
Statistics
Matches: 91, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 91 1.00
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.34
Consensus pattern (81 bp):
ATCATTTTATCACATAAGGGTAAAATTGTCATTTTATCACATAAGGGAAAAATCGTCATCTTATA
ACATAAGGGAAAAATC
Found at i:91604031 original size:27 final size:27
Alignment explanation
Indices: 91603850--91604031 Score: 229
Period size: 27 Copynumber: 6.7 Consensus size: 27
91603840 GGTATTTCGA
* * *
91603850 TCATTTTATCATATAAGGGCAAAATTG
1 TCATTTTATCACATAAGGGTAAAATCG
*
91603877 TCATTTTATCACATAAGGGAAAAATCG
1 TCATTTTATCACATAAGGGTAAAATCG
* * * *
91603904 TCATCTTATAACATAAGGGAAAAATCA
1 TCATTTTATCACATAAGGGTAAAATCG
* *
91603931 TCATTTTATCACATATGGGTAAAATTG
1 TCATTTTATCACATAAGGGTAAAATCG
* * * *
91603958 TCATTTTATCACGTGAGGGCAAAATTG
1 TCATTTTATCACATAAGGGTAAAATCG
*
91603985 TCATTTTATCACATAAGGGTAAAATCA
1 TCATTTTATCACATAAGGGTAAAATCG
91604012 TCATTTTATCACATAAGGGT
1 TCATTTTATCACATAAGGGT
91604032 TCAGGTACGC
Statistics
Matches: 134, Mismatches: 21, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 134 1.00
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (27 bp):
TCATTTTATCACATAAGGGTAAAATCG
Found at i:91604605 original size:24 final size:24
Alignment explanation
Indices: 91604562--91604607 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
91604552 AAAGAAATGG
*
91604562 GAAAAAAAAGAGAAAGAAAATGAT
1 GAAAAAAAAGAGAAAAAAAATGAT
91604586 GAAAACAAAAGA-AAAAAAAATG
1 GAAAA-AAAAGAGAAAAAAAATG
91604608 TGTCCATCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.74, C:0.02, G:0.17, T:0.07
Consensus pattern (24 bp):
GAAAAAAAAGAGAAAAAAAATGAT
Found at i:91605905 original size:39 final size:39
Alignment explanation
Indices: 91605848--91606068 Score: 361
Period size: 39 Copynumber: 5.6 Consensus size: 39
91605838 TCGGTTGATA
* **
91605848 ACCGGGCTAAGTCCCGAAGGCACTCGTGCGAGTTATTAT
1 ACCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTATTAT
*
91605887 ACTGGGCTAAGTCCCGAAGGCATTTATGCGAGTTATTAT
1 ACCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTATTAT
91605926 ACCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTATTAT
1 ACCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTATTAT
91605965 ACCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTATTAT
1 ACCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTATTAT
* * *
91606004 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTAT
1 ACCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTATTAT
*
91606043 AACCTGGCTAAGTCCCGAAGGCATTT
1 -ACCGGGCTAAGTCCCGAAGGCATTT
91606069 GATCTAGTGG
Statistics
Matches: 172, Mismatches: 9, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
39 148 0.86
40 24 0.14
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (39 bp):
ACCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTATTAT
Found at i:91615318 original size:18 final size:18
Alignment explanation
Indices: 91615295--91615329 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
91615285 ATTATGATAT
* *
91615295 GTATATATATTTGTATGA
1 GTATATACATTTATATGA
91615313 GTATATACATTTATATG
1 GTATATACATTTATATG
91615330 TGCATAAGTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.03, G:0.14, T:0.49
Consensus pattern (18 bp):
GTATATACATTTATATGA
Found at i:91621045 original size:18 final size:18
Alignment explanation
Indices: 91620997--91621045 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
91620987 CTTGGCCTAT
*
91620997 TGCAGTAACAATAAATAG
1 TGCAGTAACAGTAAATAG
* *
91621015 TGCAGTAATAGTAATTAG
1 TGCAGTAACAGTAAATAG
91621033 TGCAGTAACAGTA
1 TGCAGTAACAGTA
91621046 TACAAGTCCT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.43, C:0.10, G:0.20, T:0.27
Consensus pattern (18 bp):
TGCAGTAACAGTAAATAG
Found at i:91624028 original size:39 final size:40
Alignment explanation
Indices: 91623944--91624028 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
91623934 ACTTAATTCA
* * *
91623944 CCAGCATTAAGCCTGCGGGACTTTAAACCCGGATACAATC
1 CCAGCATGAAGCCAGCGGGACTCTAAACCCGGATACAATC
* *
91623984 CCAGCATGAAGCCAGCGGGTCTCT-AACCCGGATGCAATC
1 CCAGCATGAAGCCAGCGGGACTCTAAACCCGGATACAATC
*
91624023 TCAGCA
1 CCAGCA
91624029 CAATTCATTT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 19 0.49
40 20 0.51
ACGTcount: A:0.28, C:0.32, G:0.22, T:0.18
Consensus pattern (40 bp):
CCAGCATGAAGCCAGCGGGACTCTAAACCCGGATACAATC
Found at i:91626324 original size:4 final size:4
Alignment explanation
Indices: 91626315--91626339 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
91626305 TTTTCCTTTT
91626315 TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA T
91626340 GTCATATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:91626567 original size:22 final size:20
Alignment explanation
Indices: 91626527--91626567 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
91626517 AGTCCTATTA
*
91626527 ACTAAATTCACATGCAATTG
1 ACTAAATTCACATGAAATTG
91626547 ACTAAATTCAAACATGAAATT
1 ACTAAATTC--ACATGAAATT
91626568 TTCACACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
22 9 0.50
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.29
Consensus pattern (20 bp):
ACTAAATTCACATGAAATTG
Found at i:91627181 original size:39 final size:39
Alignment explanation
Indices: 91627127--91627201 Score: 132
Period size: 39 Copynumber: 1.9 Consensus size: 39
91627117 AGCTATGTAG
*
91627127 GTATGAGCTCGTTTGATGAGATGATACATGCTAGGTCCT
1 GTATGAGCTCGTTTGATGACATGATACATGCTAGGTCCT
*
91627166 GTATGAGCTTGTTTGATGACATGATACATGCTAGGT
1 GTATGAGCTCGTTTGATGACATGATACATGCTAGGT
91627202 TTGAGAGCTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.24, C:0.13, G:0.28, T:0.35
Consensus pattern (39 bp):
GTATGAGCTCGTTTGATGACATGATACATGCTAGGTCCT
Found at i:91630733 original size:27 final size:27
Alignment explanation
Indices: 91630676--91630733 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
91630666 CAAAATAGTC
* * *
91630676 ATTTTACCCCACAAGGGTATGTCGGTC
1 ATTTTACACCACAAGGGTATGTCGATA
*
91630703 ATTTTACACTACAAGGGTAAT-TCGATA
1 ATTTTACACCACAAGGGT-ATGTCGATA
91630730 ATTT
1 ATTT
91630734 AACAAATCGA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
27 24 0.92
28 2 0.08
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.34
Consensus pattern (27 bp):
ATTTTACACCACAAGGGTATGTCGATA
Found at i:91630748 original size:27 final size:27
Alignment explanation
Indices: 91630716--91631033 Score: 192
Period size: 27 Copynumber: 12.2 Consensus size: 27
91630706 TTACACTACA
* *
91630716 AGGGTAATTCGATAATTTAACAAATCG
1 AGGGTAATTCGGTAATTTCACAAATCG
* * *
91630743 ATGGT-ATTTGGTAATTTTACAAATCG
1 AGGGTAATTCGGTAATTTCACAAATCG
** * *
91630769 AGGGTGTTTCGATAATTTCACAAATTG
1 AGGGTAATTCGGTAATTTCACAAATCG
* * * * *
91630796 GGGGTATTTTGGTAATTTTACAAATTG
1 AGGGTAATTCGGTAATTTCACAAATCG
*
91630823 AGGGTATTTCGGTAATTTCAC-AATC-
1 AGGGTAATTCGGTAATTTCACAAATCG
* * *
91630848 -----AA-T-GGTAATTTTAAAAATTG
1 AGGGTAATTCGGTAATTTCACAAATCG
* * *
91630868 AGGATATTTCAGTAATTTCAC-AATCG
1 AGGGTAATTCGGTAATTTCACAAATCG
* * * *
91630894 AGGATATTTTGGTAATTTCATAAATCG
1 AGGGTAATTCGGTAATTTCACAAATCG
* * * *
91630921 GGGGTATTTCGATAATTTTACAAATCG
1 AGGGTAATTCGGTAATTTCACAAATCG
* **
91630948 AGGGTATTTTAGTAATTTCAC-AATCG
1 AGGGTAATTCGGTAATTTCACAAATCG
* * * *
91630974 AGGGTATTTTGGTAATTTTACAAATTG
1 AGGGTAATTCGGTAATTTCACAAATCG
* * *
91631001 AGGGTATTTCAGTAATTTTACAAATCG
1 AGGGTAATTCGGTAATTTCACAAATCG
*
91631028 ATGGTA
1 AGGGTA
91631034 TTTTAGTAAT
Statistics
Matches: 230, Mismatches: 49, Indels: 24
0.76 0.16 0.08
Matches are distributed among these distances:
18 9 0.04
19 4 0.02
20 1 0.00
25 1 0.00
26 72 0.31
27 143 0.62
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.38
Consensus pattern (27 bp):
AGGGTAATTCGGTAATTTCACAAATCG
Found at i:91630760 original size:53 final size:54
Alignment explanation
Indices: 91630714--91631026 Score: 211
Period size: 53 Copynumber: 6.0 Consensus size: 54
91630704 TTTTACACTA
*
91630714 CAAGGGTAATTCGATAATTTAACAAATCGATGGTA-TTTGGTAATTTTACAAAT
1 CAAGGGTAATTCGATAATTTAACAAATCGAGGGTATTTTGGTAATTTTACAAAT
* ** * * *
91630767 CGAGGGTGTTTCGATAATTTCACAAATTGGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTAATTCGATAATTTAACAAATCGAGGGTATTTTGGTAATTTTACAAAT
** * * * *
91630821 TGAGGGTATTTCGGTAATTTCAC-AATC-A----A---TGGTAATTTTAAAAAT
1 CAAGGGTAATTCGATAATTTAACAAATCGAGGGTATTTTGGTAATTTTACAAAT
** * * * * * *
91630866 TGAGGATATTTC-AGTAATTTCAC-AATCGAGGATATTTTGGTAATTTCATAAAT
1 CAAGGGTAATTCGA-TAATTTAACAAATCGAGGGTATTTTGGTAATTTTACAAAT
** * * * *
91630919 CGGGGGTATTTCGATAATTTTACAAATCGAGGGTATTTTAGTAATTTCAC-AAT
1 CAAGGGTAATTCGATAATTTAACAAATCGAGGGTATTTTGGTAATTTTACAAAT
* * * * * * **
91630972 CGAGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTTACAAAT
1 CAAGGGTAATTCGATAATTTAACAAATCGAGGGTATTTTGGTAATTTTACAAAT
91631026 C
1 C
91631027 GATGGTATTT
Statistics
Matches: 217, Mismatches: 30, Indels: 25
0.80 0.11 0.09
Matches are distributed among these distances:
45 39 0.18
46 1 0.00
48 1 0.00
50 1 0.00
53 109 0.50
54 66 0.30
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38
Consensus pattern (54 bp):
CAAGGGTAATTCGATAATTTAACAAATCGAGGGTATTTTGGTAATTTTACAAAT
Found at i:91630820 original size:80 final size:80
Alignment explanation
Indices: 91630728--91631046 Score: 336
Period size: 80 Copynumber: 4.1 Consensus size: 80
91630718 GGTAATTCGA
* * * * *
91630728 TAATTTAACAAATCGATGGTA-TTTGGTAATTTTACAAATCGAGGGTGTTTCGATAATTTCACAA
1 TAATTTCAC-AATCGAGGGTATTTTGGTAATTTCACAAATCGAGGGTATTTCGATAATTTTACAA
* * *
91630792 ATTGGGGGTATTTTGG
65 ATCGAGGGTATTTTAG
* * * * *
91630808 TAATTTTACAAATTGAGGGTATTTCGGTAATTTCAC-AATC-A----A--T-GGTAATTTTAAAA
1 TAATTTCAC-AATCGAGGGTATTTTGGTAATTTCACAAATCGAGGGTATTTCGATAATTTTACAA
* * *
91630864 ATTGAGGATATTTCAG
65 ATCGAGGGTATTTTAG
* * *
91630880 TAATTTCACAATCGAGGATATTTTGGTAATTTCATAAATCGGGGGTATTTCGATAATTTTACAAA
1 TAATTTCACAATCGAGGGTATTTTGGTAATTTCACAAATCGAGGGTATTTCGATAATTTTACAAA
91630945 TCGAGGGTATTTTAG
66 TCGAGGGTATTTTAG
* *
91630960 TAATTTCACAATCGAGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTC-AGTAATTTTACAA
1 TAATTTCACAATCGAGGGTATTTTGGTAATTTCACAAATCGAGGGTATTTCGA-TAATTTTACAA
*
91631024 ATCGATGGTATTTTAG
65 ATCGAGGGTATTTTAG
91631040 TAATTTC
1 TAATTTC
91631047 TCTTTATTAT
Statistics
Matches: 198, Mismatches: 30, Indels: 22
0.79 0.12 0.09
Matches are distributed among these distances:
71 22 0.11
72 34 0.17
73 1 0.01
77 1 0.01
79 3 0.02
80 125 0.63
81 12 0.06
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (80 bp):
TAATTTCACAATCGAGGGTATTTTGGTAATTTCACAAATCGAGGGTATTTCGATAATTTTACAAA
TCGAGGGTATTTTAG
Found at i:91630856 original size:45 final size:45
Alignment explanation
Indices: 91630805--91630892 Score: 149
Period size: 45 Copynumber: 2.0 Consensus size: 45
91630795 GGGGGTATTT
* * *
91630805 TGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAATCAA
1 TGGTAATTTTAAAAATTGAGGATATTTCAGTAATTTCACAATCAA
91630850 TGGTAATTTTAAAAATTGAGGATATTTCAGTAATTTCACAATC
1 TGGTAATTTTAAAAATTGAGGATATTTCAGTAATTTCACAATC
91630893 GAGGATATTT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.35, C:0.10, G:0.16, T:0.39
Consensus pattern (45 bp):
TGGTAATTTTAAAAATTGAGGATATTTCAGTAATTTCACAATCAA
Found at i:91630957 original size:98 final size:99
Alignment explanation
Indices: 91630752--91630958 Score: 240
Period size: 98 Copynumber: 2.1 Consensus size: 99
91630742 GATGGTATTT
* * * * * * * *
91630752 GGTAATTTTACAAATCGAGGGTGTTTC-GATAATTTCACAAATTGGGGGTATTTTGGTAATTTTA
1 GGTAATTTTAAAAATTGAGGATATTTCAG-TAATTTCACAAATCGAGGATATTTTGGTAATTTCA
* * *
91630816 CAAATTGAGGGTATTTCGGTAATTTCACAATCAAT
65 CAAATCGAGGGTATTTCGATAATTTCACAATCAAG
*
91630851 GGTAATTTTAAAAATTGAGGATATTTCAGTAATTTCAC-AATCGAGGATATTTTGGTAATTTCAT
1 GGTAATTTTAAAAATTGAGGATATTTCAGTAATTTCACAAATCGAGGATATTTTGGTAATTTCAC
* * *
91630915 AAATCGGGGGTATTTCGATAATTTTACAAATCGAG
66 AAATCGAGGGTATTTCGATAATTTCAC-AATCAAG
91630950 GGT-ATTTTA
1 GGTAATTTTA
91630959 GTAATTTCAC
Statistics
Matches: 91, Mismatches: 15, Indels: 5
0.82 0.14 0.05
Matches are distributed among these distances:
98 50 0.55
99 40 0.44
100 1 0.01
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (99 bp):
GGTAATTTTAAAAATTGAGGATATTTCAGTAATTTCACAAATCGAGGATATTTTGGTAATTTCAC
AAATCGAGGGTATTTCGATAATTTCACAATCAAG
Found at i:91631034 original size:27 final size:27
Alignment explanation
Indices: 91630852--91631045 Score: 214
Period size: 27 Copynumber: 7.3 Consensus size: 27
91630842 ACAATCAATG
* * * *
91630852 GTAATTTTAAAAATTGAGGATATTTCA
1 GTAATTTTACAAATCGAGGGTATTTTA
* * *
91630879 GTAATTTCAC-AATCGAGGATATTTTG
1 GTAATTTTACAAATCGAGGGTATTTTA
* * * *
91630905 GTAATTTCATAAATCGGGGGTA-TTTC
1 GTAATTTTACAAATCGAGGGTATTTTA
91630931 GATAATTTTACAAATCGAGGGTATTTTA
1 G-TAATTTTACAAATCGAGGGTATTTTA
* *
91630959 GTAATTTCAC-AATCGAGGGTATTTTG
1 GTAATTTTACAAATCGAGGGTATTTTA
* *
91630985 GTAATTTTACAAATTGAGGGTATTTCA
1 GTAATTTTACAAATCGAGGGTATTTTA
*
91631012 GTAATTTTACAAATCGATGGTATTTTA
1 GTAATTTTACAAATCGAGGGTATTTTA
91631039 GTAATTT
1 GTAATTT
91631046 CTCTTTATTA
Statistics
Matches: 141, Mismatches: 22, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
26 50 0.35
27 87 0.62
28 4 0.03
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (27 bp):
GTAATTTTACAAATCGAGGGTATTTTA
Found at i:91631394 original size:28 final size:28
Alignment explanation
Indices: 91631361--91631480 Score: 186
Period size: 28 Copynumber: 4.3 Consensus size: 28
91631351 TGGCCCCTTT
* * *
91631361 AGGCCCAATCTCGTTCACATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
*
91631389 AGGCCCAGTCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
**
91631417 AGGCCCAATCACATTCATATGGCGTATC
1 AGGCCCAATCACATTCATATGGCCCATC
91631445 AGGCCCAATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
91631473 AGGCCCAA
1 AGGCCCAA
91631481 CTACTTCTTA
Statistics
Matches: 83, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 83 1.00
ACGTcount: A:0.27, C:0.35, G:0.17, T:0.21
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:91639908 original size:27 final size:26
Alignment explanation
Indices: 91639868--91639966 Score: 99
Period size: 27 Copynumber: 3.7 Consensus size: 26
91639858 AGCATGGCTG
* *
91639868 CCAGAACAGATATTGTGATAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
* *
91639894 CCAGATACAAATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
* * *
91639921 CCAGAACAGATATTTATGGCATAGCCA
1 CCAGAACAGATA-TTGTGACAGAGCCA
91639948 CCAGAAACAGATAATTGTG
1 CCAG-AACAGAT-ATTGTG
91639967 GCATAACCAC
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
26 11 0.18
27 38 0.62
28 11 0.18
29 1 0.02
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.21
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:91639968 original size:28 final size:28
Alignment explanation
Indices: 91639892--91639981 Score: 103
Period size: 28 Copynumber: 3.3 Consensus size: 28
91639882 GTGATAGAGT
* * *
91639892 CACCAGATACAAAT-ATTGTGGCAGAGC
1 CACCAGAAACAGATAATTGTGGCATAGC
* *
91639919 CACCAG-AACAGATATTTATGGCATAGC
1 CACCAGAAACAGATAATTGTGGCATAGC
*
91639946 CACCAGAAACAGATAATTGTGGCATAAC
1 CACCAGAAACAGATAATTGTGGCATAGC
*
91639974 CACTAGAA
1 CACCAGAA
91639982 CACTTCCTCC
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
26 5 0.10
27 22 0.42
28 25 0.48
ACGTcount: A:0.40, C:0.22, G:0.19, T:0.19
Consensus pattern (28 bp):
CACCAGAAACAGATAATTGTGGCATAGC
Found at i:91644098 original size:48 final size:48
Alignment explanation
Indices: 91644040--91644360 Score: 496
Period size: 48 Copynumber: 6.9 Consensus size: 48
91644030 ATATACACAC
* *
91644040 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
91644088 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACGACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
91644136 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACACATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
91644184 ATCTCATACATATTTCACATTGGCCATTCGGCTTTACCATACATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
91644232 ATCTCATACATATTTCACATTGGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
91644280 ATCTCATACATATTTCACATTGGCCA--------TACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
91644320 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
91644361 CACATATATA
Statistics
Matches: 255, Mismatches: 10, Indels: 16
0.91 0.04 0.06
Matches are distributed among these distances:
40 39 0.15
48 216 0.85
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:91644313 original size:40 final size:40
Alignment explanation
Indices: 91644266--91644346 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
91644256 CATTCGGCTT
*
91644266 TACCACATATACATATCTCATACATATTTCACATTGGCCA
1 TACCACATATACATATCTCATACATATTTCACATTAGCCA
91644306 TACCACATATACATATCTCATACATATTTCACATTAGCCA
1 TACCACATATACATATCTCATACATATTTCACATTAGCCA
91644346 T
1 T
91644347 TCGGCTTTAC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.36, C:0.27, G:0.04, T:0.33
Consensus pattern (40 bp):
TACCACATATACATATCTCATACATATTTCACATTAGCCA
Found at i:91644923 original size:50 final size:50
Alignment explanation
Indices: 91644839--91644933 Score: 163
Period size: 50 Copynumber: 1.9 Consensus size: 50
91644829 TCTGACACTG
* *
91644839 TCTCCCACAACTTTAAATATCTCTTTATAGGAAATTTCTTTGCTTCGCTA
1 TCTCACACAACTTTAAATATATCTTTATAGGAAATTTCTTTGCTTCGCTA
*
91644889 TCTCACACAACTTTAAATATATCTTTATATGAAATTTCTTTGCTT
1 TCTCACACAACTTTAAATATATCTTTATAGGAAATTTCTTTGCTT
91644934 ACACGGTCTC
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 42 1.00
ACGTcount: A:0.28, C:0.21, G:0.06, T:0.44
Consensus pattern (50 bp):
TCTCACACAACTTTAAATATATCTTTATAGGAAATTTCTTTGCTTCGCTA
Found at i:91646887 original size:28 final size:28
Alignment explanation
Indices: 91646856--91646955 Score: 130
Period size: 28 Copynumber: 3.5 Consensus size: 28
91646846 CTGACTGATT
*
91646856 TCGCACACATAGCGCTCGATTAAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* * *
91646884 TCGCACACATAGTGCCTCAATTACCA-ATC
1 TCGCACACATAGTG-CTCGATTA-AAGAAC
*
91646913 TCGCACACATAGTGCTCGATTGAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
91646941 TCGCACACATAGTGC
1 TCGCACACATAGTGC
91646956 CTCAGCTACT
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
27 1 0.02
28 36 0.59
29 23 0.38
30 1 0.02
ACGTcount: A:0.32, C:0.30, G:0.17, T:0.21
Consensus pattern (28 bp):
TCGCACACATAGTGCTCGATTAAAGAAC
Found at i:91646916 original size:29 final size:29
Alignment explanation
Indices: 91646883--91646984 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 29
91646873 GATTAAAGAA
91646883 CTCGCACACATAGTGCCTCAATTACCAAT
1 CTCGCACACATAGTGCCTCAATTACCAAT
* **
91646912 CTCGCACACATAGTG-CTCGATTGAAGAA-
1 CTCGCACACATAGTGCCTCAATT-ACCAAT
** **
91646940 CTCGCACACATAGTGCCTCAGCTACTGAT
1 CTCGCACACATAGTGCCTCAATTACCAAT
*
91646969 CTGGCACACATAGTGC
1 CTCGCACACATAGTGC
91646985 TCAGTTGAAG
Statistics
Matches: 60, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
28 23 0.38
29 37 0.62
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCAATTACCAAT
Found at i:91646923 original size:57 final size:57
Alignment explanation
Indices: 91646856--91647016 Score: 216
Period size: 57 Copynumber: 2.8 Consensus size: 57
91646846 CTGACTGATT
* * *
91646856 TCGCACACATAGCGCTCGATTAAAGAACTCGCACACATAGTGCCTCAATTACCAATC
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
* **
91646913 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAGCTACTGATC
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
* * * *
91646970 TGGCACACATAGTGCTC-AGTTGAAGAACTTGCACACACAATGCCTCA
1 TCGCACACATAGTGCTCGA-TTGAAGAACTCGCACACATAGTGCCTCA
91647017 TAGCTCCAGC
Statistics
Matches: 93, Mismatches: 10, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
56 1 0.01
57 92 0.99
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.22
Consensus pattern (57 bp):
TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
Done.