Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 273 of 284
Found at i:91647003 original size:28 final size:27
Alignment explanation
Indices: 91646856--91647006 Score: 126
Period size: 28 Copynumber: 5.3 Consensus size: 27
91646846 CTGACTGATT
*
91646856 TCGCACACATAGCGCTC-GATTAAAGAAC
1 TCGCACACATAGTGCTCAG-TT-AAGAAC
* **
91646884 TCGCACACATAGTGCCTCAATTACCAATC
1 TCGCACACATAGTG-CTCAGTTAAGAA-C
91646913 TCGCACACATAGTGCTC-GATTGAAGAAC
1 TCGCACACATAGTGCTCAG-TT-AAGAAC
* * *
91646941 TCGCACACATAGTGCCTCAGCTACTGATC
1 TCGCACACATAGTG-CTCAGTTA-AGAAC
*
91646970 TGGCACACATAGTGCTCAGTTGAAGAAC
1 TCGCACACATAGTGCTCAGTT-AAGAAC
*
91646998 TTGCACACA
1 TCGCACACA
91647007 CAATGCCTCA
Statistics
Matches: 99, Mismatches: 15, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
28 54 0.55
29 44 0.44
30 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (27 bp):
TCGCACACATAGTGCTCAGTTAAGAAC
Found at i:91648297 original size:40 final size:40
Alignment explanation
Indices: 91647044--91648290 Score: 2174
Period size: 40 Copynumber: 31.2 Consensus size: 40
91647034 CCTTTGAGGT
* *
91647044 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
* *
91647084 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
* *
91647124 TTAGCTCGGATACATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
91647164 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
* *
91647204 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
* * * *
91647244 TTAGCCCGGATATAACA-TCAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACT-ACCACGAATGCTCTTCGGAAC
*
91647284 TTACCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
91647324 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
91647364 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
91647404 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
91647444 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
91647484 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
91647524 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
91647564 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
91647604 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
91647644 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
91647684 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
91647724 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
91647764 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
91647804 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
91647844 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
91647884 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
91647924 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
91647964 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
91648004 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
91648044 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
91648084 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
* *
91648124 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
* * * *
91648164 TTAGCCCGGATATAACA-TCAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACT-ACCACGAATGCTCTTCGGAAC
* * * * * *
91648204 TTACCCCGGATATAACACCAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
* * * * ** *
91648244 TTAGCCCGGCTATAACACCAGAACGAATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
91648284 TTAGCCC
1 TTAGCCC
91648291 AGCTATATAA
Statistics
Matches: 1178, Mismatches: 25, Indels: 8
0.97 0.02 0.01
Matches are distributed among these distances:
39 2 0.00
40 1175 1.00
41 1 0.00
ACGTcount: A:0.27, C:0.32, G:0.19, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATACATCACTACCACGAATGCTCTTCGGAAC
Found at i:91656714 original size:141 final size:141
Alignment explanation
Indices: 91656489--91656769 Score: 535
Period size: 141 Copynumber: 2.0 Consensus size: 141
91656479 AATTAGTACA
* *
91656489 GTTTATTAGTCAAAGTCTCCCATGTTACAGGGATCGACGACCCTGACCTTTGCGCATTACGACTT
1 GTTTATTAGTCAAAGTCTCCCATGTTACAGGGATCGACGAACCTAACCTTTGCGCATTACGACTT
91656554 CGATATCTCCTTGTACAGGGCTCCAATACTGATGCCGTTTGTTTCTATAGAAACTAGACTCAGAG
66 CGATATCTCCTTGTACAGGGCTCCAATACTGATGCCGTTTGTTTCTATAGAAACTAGACTCAGAG
91656619 AGGAATCTATC
131 AGGAATCTATC
91656630 GTTTATTAGTCAAAGTCTCCCATGTTACAGGGATCGACGAACCTAACCTTTGCGCATTACGACTT
1 GTTTATTAGTCAAAGTCTCCCATGTTACAGGGATCGACGAACCTAACCTTTGCGCATTACGACTT
*
91656695 GGATATCTCCTTGTACAGGGCTCCAATACTGATGCCGTTTGTTTCTATAGAAACTAGACTCAGAG
66 CGATATCTCCTTGTACAGGGCTCCAATACTGATGCCGTTTGTTTCTATAGAAACTAGACTCAGAG
91656760 AGGAATCTAT
131 AGGAATCTAT
91656770 ACATATATGG
Statistics
Matches: 137, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
141 137 1.00
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (141 bp):
GTTTATTAGTCAAAGTCTCCCATGTTACAGGGATCGACGAACCTAACCTTTGCGCATTACGACTT
CGATATCTCCTTGTACAGGGCTCCAATACTGATGCCGTTTGTTTCTATAGAAACTAGACTCAGAG
AGGAATCTATC
Found at i:91657033 original size:136 final size:136
Alignment explanation
Indices: 91656785--91657056 Score: 517
Period size: 136 Copynumber: 2.0 Consensus size: 136
91656775 TATGGTATGA
*
91656785 CTCCTAATTATCTCTGGTTAATTTATAATGAATTTCTAAAGTCGGAACAGGAAATCCAGAAACCG
1 CTCCTAATTATCTCTGGTTAATTTATAATGAATTTCTAAAGTCGGAACAAGAAATCCAGAAACCG
91656850 TTCTGGCCCTGTCTCACGAGAACCTGAATATCTCTTAACATACTGTCCGTATGATTGTTTCGTTA
66 TTCTGGCCCTGTCTCACGAGAACCTGAATATCTCTTAACATACTGTCCGTATGATTGTTTCGTTA
91656915 CTTTCC
131 CTTTCC
*
91656921 CTCCTAATTATCTCTGGTTAATTTATAATGAATTTCTAAATTCGGAACAAGAAATCCAGAAACCG
1 CTCCTAATTATCTCTGGTTAATTTATAATGAATTTCTAAAGTCGGAACAAGAAATCCAGAAACCG
*
91656986 TTCTGGCCCTGTCTCACGAGAACCTGAATATCTCTTAACATATTGTCCGTATGATTGTTTCGTTA
66 TTCTGGCCCTGTCTCACGAGAACCTGAATATCTCTTAACATACTGTCCGTATGATTGTTTCGTTA
91657051 CTTTCC
131 CTTTCC
91657057 TATGAAAGTA
Statistics
Matches: 133, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
136 133 1.00
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (136 bp):
CTCCTAATTATCTCTGGTTAATTTATAATGAATTTCTAAAGTCGGAACAAGAAATCCAGAAACCG
TTCTGGCCCTGTCTCACGAGAACCTGAATATCTCTTAACATACTGTCCGTATGATTGTTTCGTTA
CTTTCC
Found at i:91657188 original size:57 final size:57
Alignment explanation
Indices: 91657114--91657228 Score: 212
Period size: 57 Copynumber: 2.0 Consensus size: 57
91657104 TTAATTCCAT
91657114 TCCTACTATTTTTAGTGATTTTCCAAATCTACATCACTGCTGCTGTCAGCATCTGCC
1 TCCTACTATTTTTAGTGATTTTCCAAATCTACATCACTGCTGCTGTCAGCATCTGCC
* *
91657171 TCCTGCTATTTTTAGTGATTTTCCAAATCTACCTCACTGCTGCTGTCAGCATCTGCC
1 TCCTACTATTTTTAGTGATTTTCCAAATCTACATCACTGCTGCTGTCAGCATCTGCC
91657228 T
1 T
91657229 TTAAGGTAGA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.19, C:0.29, G:0.13, T:0.39
Consensus pattern (57 bp):
TCCTACTATTTTTAGTGATTTTCCAAATCTACATCACTGCTGCTGTCAGCATCTGCC
Found at i:91658046 original size:79 final size:79
Alignment explanation
Indices: 91657944--91658522 Score: 999
Period size: 79 Copynumber: 7.3 Consensus size: 79
91657934 GCTCCTCGTT
* *
91657944 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGACTTAACCC
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTCGGGACTTAACCC
91658007 GGATTTAGTAACTCGCA
63 GGATTTAGTAACTCGCA
91658024 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGGA
91658089 TTTAGTAACTCGCA
66 TTTAGTAACTCGCA
91658103 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGGA
91658168 TTTAGTAACTCGCA
66 TTTAGTAACTCGCA
91658182 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGGA
91658247 TTTAGTAACTCGCA
66 TTTAGTAACTCGCA
91658261 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGGA
91658326 TTTAGTAACTCGCA
66 TTTAGTAACTCGCA
91658340 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGGA
91658405 TTTAGTAACTCGCA
66 TTTAGTAACTCGCA
**
91658419 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
91658483 ATATT-GTCACTTAGCA
65 AT-TTAGTAAC-TCGCA
91658499 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
91658523 CATCATTCAA
Statistics
Matches: 487, Mismatches: 6, Indels: 13
0.96 0.01 0.03
Matches are distributed among these distances:
78 14 0.03
79 451 0.93
80 22 0.05
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGGA
TTTAGTAACTCGCA
Found at i:91660440 original size:27 final size:26
Alignment explanation
Indices: 91660407--91660584 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 26
91660397 TAAATTGTAC
91660407 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * * *
91660434 TGTACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
91660460 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
91660488 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
91660516 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
91660543 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
91660570 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
91660585 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.01
27 100 0.79
28 25 0.20
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:91660525 original size:82 final size:81
Alignment explanation
Indices: 91660408--91660563 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
91660398 AAATTGTACA
* * * *
91660408 GCACTAAGTGTGCGATTCGACTATGTTGTACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
91660472 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
91660489 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
91660554 TGCGAGTTGA
65 TGCGAATTGA
91660564 TTATATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 17 0.26
82 47 0.72
83 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:91660575 original size:82 final size:81
Alignment explanation
Indices: 91660404--91660584 Score: 211
Period size: 82 Copynumber: 2.2 Consensus size: 81
91660394 GATTAAATTG
* * * *
91660404 TACAGCACTAAGTGTGCGATTCGACTATGTTGTACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
91660469 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
91660485 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
91660549 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
91660567 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
91660585 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 20 0.24
82 62 0.76
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:91660595 original size:27 final size:27
Alignment explanation
Indices: 91660489--91660595 Score: 79
Period size: 27 Copynumber: 3.9 Consensus size: 27
91660479 TGACCATGCG
* * *
91660489 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
91660517 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
91660544 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
91660571 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
91660596 CATTCGTGAA
Statistics
Matches: 67, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
27 52 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:91663648 original size:65 final size:65
Alignment explanation
Indices: 91663579--91663704 Score: 173
Period size: 65 Copynumber: 1.9 Consensus size: 65
91663569 AAAGAGCTAT
* * * *
91663579 GTTTGTGTCCACAATATATGTAGGATCACAACCGATCGCAT-AACAGGATGCTCACAAAGAGTTG
1 GTTTGTGTCCACAACATATATAGGATCACAACCGATC-AATAAACAGGACGCTCACAAAGAGTTG
91663643 C
65 C
** *
91663644 GTTTGTGTCTGCAACATATATAGGATCACAACCGATCAATAAACAGGACGCTTACAAAGAG
1 GTTTGTGTCCACAACATATATAGGATCACAACCGATCAATAAACAGGACGCTCACAAAGAG
91663705 CTGCACTAGT
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
64 2 0.04
65 51 0.96
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.24
Consensus pattern (65 bp):
GTTTGTGTCCACAACATATATAGGATCACAACCGATCAATAAACAGGACGCTCACAAAGAGTTGC
Found at i:91668349 original size:47 final size:46
Alignment explanation
Indices: 91668150--91668418 Score: 188
Period size: 47 Copynumber: 5.7 Consensus size: 46
91668140 GAAAGGTTGT
* * * * * * *
91668150 CGATGCCATGTCCCAGACATGGTTTTATACTAGCTCTCGTATATACATC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCATCTCTAC-GC
* * * *
91668199 CTGATGCATGACCTAGACATGTCTTACACTAGCA--CAACTCTTA-GA
1 C-GATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTC-TACGC
* * * * *
91668244 CGATGCGTGTCCCAGACACGTCTTACACTGGCTA-TCATCATCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC-ACTCATC-TCTACGC
* * *
91668291 TGATGCGTGTCCCAGACATGTCTTACACTAGCACTTATCTCTACGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCTACGC
* * * * * *
91668337 CGATGCCATGTCCCAAACATGGTCTTATACTGGCACTCATAATGT-GGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCAT-CTCTACGC
91668385 CGATGCATGTCCCAGACATGTCTTACACTAGCAC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCAC
91668419 ACAAGAAATT
Statistics
Matches: 173, Mismatches: 37, Indels: 23
0.74 0.16 0.10
Matches are distributed among these distances:
44 26 0.15
45 2 0.01
46 29 0.17
47 63 0.36
48 34 0.20
49 15 0.09
50 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCTACGC
Found at i:91668400 original size:94 final size:92
Alignment explanation
Indices: 91668150--91668419 Score: 271
Period size: 94 Copynumber: 2.9 Consensus size: 92
91668140 GAAAGGTTGT
* * * * ** * *
91668150 CGATGCCATGTCCCAGACATGGTTTTATACTAGCTCTCGTATAT-ACATCCTGATGCATGACCTA
1 CGATGCCATGTCCCAGACATGGTCTTATACTGGCACTCATA-ATGA-GGCC-GATGCATGTCCCA
91668214 GACATGTCTTACACTAGCACAACTCTTAGA
63 GACATGTCTTACACTAGCACAACTCTTAGA
* * * * * *
91668244 CGATG-CGTGTCCCAGACA-CGTCTTACACTGGCTA-TCATCATCGAGGCTGATGCGTGTCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTATACTGGC-ACTCATAAT-GAGGCCGATGCATGTCCCAG
* *
91668306 ACATGTCTTACACTAGCACTTA-TCTCTACGC
64 ACATGTCTTACACTAGCAC-AACTCT-TA-GA
* *
91668337 CGATGCCATGTCCCAAACATGGTCTTATACTGGCACTCATAATGTGGCCGATGCATGTCCCAGAC
1 CGATGCCATGTCCCAGACATGGTCTTATACTGGCACTCATAATGAGGCCGATGCATGTCCCAGAC
91668402 ATGTCTTACACTAGCACA
66 ATGTCTTACACTAGCACA
91668420 CAAGAAATTC
Statistics
Matches: 142, Mismatches: 25, Indels: 19
0.76 0.13 0.10
Matches are distributed among these distances:
91 35 0.25
92 17 0.12
93 19 0.13
94 53 0.37
95 18 0.13
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (92 bp):
CGATGCCATGTCCCAGACATGGTCTTATACTGGCACTCATAATGAGGCCGATGCATGTCCCAGAC
ATGTCTTACACTAGCACAACTCTTAGA
Found at i:91676570 original size:74 final size:74
Alignment explanation
Indices: 91676481--91676622 Score: 257
Period size: 74 Copynumber: 1.9 Consensus size: 74
91676471 TGTTAACCTA
*
91676481 TCCACAACCACCCACACCGAATCTTTCTTGGTGGGTGTCAAAGGTAACCCACTCACAAAGTCCAT
1 TCCACAACCACCCACACCGAATCTTTCTTGGTGGGCGTCAAAGGTAACCCACTCACAAAGTCCAT
91676546 TGTTACTCT
66 TGTTACTCT
* *
91676555 TCCACAACTACCCACACCGAATCTTTCTTGGTGGGCGTCGAAGGTAACCCACTCACAAAGTCCAT
1 TCCACAACCACCCACACCGAATCTTTCTTGGTGGGCGTCAAAGGTAACCCACTCACAAAGTCCAT
91676620 TGT
66 TGT
91676623 AAATCTTTCC
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
74 65 1.00
ACGTcount: A:0.27, C:0.32, G:0.16, T:0.25
Consensus pattern (74 bp):
TCCACAACCACCCACACCGAATCTTTCTTGGTGGGCGTCAAAGGTAACCCACTCACAAAGTCCAT
TGTTACTCT
Found at i:91682031 original size:18 final size:17
Alignment explanation
Indices: 91682008--91682042 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
91681998 CTGCTACTGA
*
91682008 GATCTCTTCCGTTGTCC
1 GATCTCTTCCGATGTCC
91682025 NGATCTCTTCCGATGTCC
1 -GATCTCTTCCGATGTCC
91682043 TACAATCGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.09, C:0.34, G:0.17, T:0.37
Consensus pattern (17 bp):
GATCTCTTCCGATGTCC
Found at i:91691088 original size:19 final size:17
Alignment explanation
Indices: 91691056--91691090 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
91691046 TATTGCAATT
91691056 TAATTTTTTTTATTTTG
1 TAATTTTTTTTATTTTG
91691073 TAATTCTTTATTTATTTT
1 TAATT-TTT-TTTATTTT
91691091 CTTCTGACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 3 0.19
19 8 0.50
ACGTcount: A:0.20, C:0.03, G:0.03, T:0.74
Consensus pattern (17 bp):
TAATTTTTTTTATTTTG
Found at i:91692902 original size:21 final size:21
Alignment explanation
Indices: 91692865--91692908 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
91692855 GTAGTTTGCT
*
91692865 TAGCCATATTATAGAATAAGC
1 TAGCCATATTACAGAATAAGC
* *
91692886 TAGCCATATTACGGAATACGC
1 TAGCCATATTACAGAATAAGC
91692907 TA
1 TA
91692909 CCCAACAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (21 bp):
TAGCCATATTACAGAATAAGC
Found at i:91709145 original size:40 final size:40
Alignment explanation
Indices: 91709061--91709285 Score: 258
Period size: 40 Copynumber: 5.7 Consensus size: 40
91709051 TTGAATGCTG
* * * *
91709061 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
91709101 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
91709141 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
91709181 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
91709221 TCCGGGTTATGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
91709260 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
91709286 AACGAGGAGC
Statistics
Matches: 159, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
39 35 0.22
40 116 0.73
41 8 0.05
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:91709303 original size:79 final size:80
Alignment explanation
Indices: 91709061--91709318 Score: 204
Period size: 80 Copynumber: 3.2 Consensus size: 80
91709051 TTGAATGCTG
* * * * * *
91709061 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTA-AGTGACTATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGA-T-ACTAAAACCGGGCTAAG-TCCCGAAGGCA
* ** * * *
91709123 TTTGTGCGAGTTATTAAT
63 TTCGAACGAGTGACTAAA
* * *
91709141 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
91709206 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
91709221 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
91709285 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
91709300 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
91709319 TACGTGATTT
Statistics
Matches: 152, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
78 15 0.10
79 49 0.32
80 77 0.51
81 10 0.07
82 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:91717432 original size:14 final size:14
Alignment explanation
Indices: 91717413--91717442 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
91717403 AAGAGAGAAT
*
91717413 GATGATGGATGAGG
1 GATGATGAATGAGG
91717427 GATGATGAATGAGG
1 GATGATGAATGAGG
91717441 GA
1 GA
91717443 ACGAAGGGGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.47, T:0.20
Consensus pattern (14 bp):
GATGATGAATGAGG
Found at i:91726502 original size:28 final size:28
Alignment explanation
Indices: 91726460--91726550 Score: 132
Period size: 28 Copynumber: 3.2 Consensus size: 28
91726450 GTGAGAGAGT
91726460 CACCAGATACAGAT-ATTTCGTGGCAGTGC
1 CACCAGA-ACAGATAATTT-GTGGCAGTGC
*
91726489 CACCAGAACAGATAATTTGTGGCAGAGC
1 CACCAGAACAGATAATTTGTGGCAGTGC
91726517 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGATAATTTGTGGCAGT-GC
91726545 CACCAG
1 CACCAG
91726551 GACGCTTCCT
Statistics
Matches: 58, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
28 47 0.81
29 11 0.19
ACGTcount: A:0.33, C:0.24, G:0.23, T:0.20
Consensus pattern (28 bp):
CACCAGAACAGATAATTTGTGGCAGTGC
Found at i:91726703 original size:28 final size:28
Alignment explanation
Indices: 91726659--91726720 Score: 106
Period size: 28 Copynumber: 2.2 Consensus size: 28
91726649 TTAACCCTAA
*
91726659 GGGTATAAAGGTCATTTTGCATACATAG
1 GGGTATAAAGGTAATTTTGCATACATAG
*
91726687 GGGTATAATGGTAATTTTGCATACATAG
1 GGGTATAAAGGTAATTTTGCATACATAG
91726715 GGGTAT
1 GGGTAT
91726721 TCCAGTAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.31, C:0.08, G:0.27, T:0.34
Consensus pattern (28 bp):
GGGTATAAAGGTAATTTTGCATACATAG
Found at i:91728341 original size:39 final size:39
Alignment explanation
Indices: 91728296--91728374 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
91728286 CACAATTAAT
91728296 CCTACACTTAACAAGCAGAACACAGAATTTTTAATTTTA
1 CCTACACTTAACAAGCAGAACACAGAATTTTTAATTTTA
91728335 CCTACACTTAACAAGCAGAACACAGAATTTTTAATTTTA
1 CCTACACTTAACAAGCAGAACACAGAATTTTTAATTTTA
91728374 C
1 C
91728375 AAAAAAAATT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.30
Consensus pattern (39 bp):
CCTACACTTAACAAGCAGAACACAGAATTTTTAATTTTA
Found at i:91734339 original size:28 final size:28
Alignment explanation
Indices: 91734297--91734387 Score: 123
Period size: 28 Copynumber: 3.2 Consensus size: 28
91734287 GTGACAGAGT
91734297 CACCAGATACAGAT-ATTTCGTGGCAGTGC
1 CACCAGA-ACAGATAATTT-GTGGCAGTGC
* *
91734326 CACCAGAACAGATAATTTGTCGCAGAGC
1 CACCAGAACAGATAATTTGTGGCAGTGC
91734354 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGATAATTTGTGGCAGT-GC
91734382 CACCAG
1 CACCAG
91734388 GACGCTTCCT
Statistics
Matches: 56, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
28 45 0.80
29 11 0.20
ACGTcount: A:0.33, C:0.25, G:0.22, T:0.20
Consensus pattern (28 bp):
CACCAGAACAGATAATTTGTGGCAGTGC
Found at i:91735613 original size:12 final size:13
Alignment explanation
Indices: 91735594--91735626 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
91735584 GGGTTCAGCT
91735594 ATGGAGAAGGAAG
1 ATGGAGAAGGAAG
*
91735607 A-GGAGAAGGTAG
1 ATGGAGAAGGAAG
91735619 ATGGAGAA
1 ATGGAGAA
91735627 AAAGAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
ATGGAGAAGGAAG
Found at i:91737236 original size:43 final size:43
Alignment explanation
Indices: 91737170--91737305 Score: 150
Period size: 43 Copynumber: 3.2 Consensus size: 43
91737160 AACTTGTACA
* * *
91737170 ATGCCAACATCTTAGACATGGTCTTACATGTAATCAAATATCG
1 ATGCCAATATCCTAGACATGGTCTTACATGAAATCAAATATCG
** * * *
91737213 ATGCCGCTATCCTAGACAAGGTCTTACACGAAATCATATA-CG
1 ATGCCAATATCCTAGACATGGTCTTACATGAAATCAAATATCG
* *
91737255 ATGCCAATGTCCCAGACATGGTCTTACATGCAAATCACAA-ATCG
1 ATGCCAATATCCTAGACATGGTCTTACATG-AAATCA-AATATCG
91737299 ATGCCAA
1 ATGCCAA
91737306 CGTCCCAGAT
Statistics
Matches: 75, Mismatches: 15, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
42 26 0.35
43 39 0.52
44 10 0.13
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (43 bp):
ATGCCAATATCCTAGACATGGTCTTACATGAAATCAAATATCG
Found at i:91737311 original size:44 final size:42
Alignment explanation
Indices: 91737183--91737326 Score: 139
Period size: 44 Copynumber: 3.4 Consensus size: 42
91737173 CCAACATCTT
* * * *
91737183 AGACATGGTCTTACATGTAATCAAATATCGATGCC-GCTATCCT
1 AGACATGGTCTTACATGAAATCAAA-ATCGATGCCAAC-GTCCC
* * * *
91737226 AGACAAGGTCTTACACGAAATC-ATATACGATGCCAATGTCCC
1 AGACATGGTCTTACATGAAATCAAAAT-CGATGCCAACGTCCC
91737268 AGACATGGTCTTACATGCAAATCACAAATCGATGCCAACGTCCC
1 AGACATGGTCTTACATG-AAATCA-AAATCGATGCCAACGTCCC
**
91737312 AGATGTGGTCTTACA
1 AGACATGGTCTTACA
91737327 CGATAACACA
Statistics
Matches: 82, Mismatches: 14, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
41 2 0.02
42 26 0.32
43 24 0.29
44 27 0.33
45 3 0.04
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (42 bp):
AGACATGGTCTTACATGAAATCAAAATCGATGCCAACGTCCC
Found at i:91743543 original size:19 final size:18
Alignment explanation
Indices: 91743510--91743545 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
91743500 AACTTGGTAC
*
91743510 CATAATCATTTAATTCAA
1 CATAATCAATTAATTCAA
91743528 CATAATTCAATTAATTCA
1 CATAA-TCAATTAATTCA
91743546 CTAAATTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.44, C:0.17, G:0.00, T:0.39
Consensus pattern (18 bp):
CATAATCAATTAATTCAA
Found at i:91743875 original size:30 final size:30
Alignment explanation
Indices: 91743841--91743901 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
91743831 TCCTTAACTC
91743841 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
91743871 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
91743901 A
1 A
91743902 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:91773302 original size:49 final size:48
Alignment explanation
Indices: 91773229--91773465 Score: 242
Period size: 49 Copynumber: 4.8 Consensus size: 48
91773219 AACCGAAGCT
* *
91773229 ATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAAC
* *
91773277 AGTCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTCACC
1 A-TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAAC
** *** *
91773328 ATCTAATACACGTAGTAGCCTGCACTTAGTACTACACACATGATC-AC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAAC
* * * * *
91773375 AGTTTTCGGGTACGCATAGTAGCCTGCACTTAGTAATACACATGCGACCAATT
1 A----TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAA-C
* *
91773428 ATCCGGTACATGTAGTAGCCTGCACTTAGTACTACACA
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
91773466 CGTGACCTCA
Statistics
Matches: 154, Mismatches: 26, Indels: 17
0.78 0.13 0.09
Matches are distributed among these distances:
47 2 0.01
48 2 0.01
49 71 0.46
50 39 0.25
51 38 0.25
52 1 0.01
53 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (48 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAAC
Found at i:91773415 original size:101 final size:98
Alignment explanation
Indices: 91773241--91773466 Score: 265
Period size: 101 Copynumber: 2.3 Consensus size: 98
91773231 CTGGTACGCA
** * *
91773241 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACACGACCAACAGTCGGGTACACATAGTAGCCTGCACTTA
* * * *
91773306 GTACTACACATGTGACCTCACCATCTAATACACG
66 GTAATACACATGCGACC-AACCATCCAATACACG
* * *
91773340 TAGTAGCCTGCACTTAGTACTACACACATGATC-ACAGTTTTCGGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACACGACCAACAG---TCGGGTACACATAGTAGCCTGCAC
** ** *
91773404 TTAGTAATACACATGCGACCAATTATCCGGTACATG
63 TTAGTAATACACATGCGACCAACCATCCAATACACG
91773440 TAGTAGCCTGCACTTAGTACTACACAC
1 TAGTAGCCTGCACTTAGTACTACACAC
91773467 GTGACCTCAC
Statistics
Matches: 108, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
98 4 0.04
99 29 0.27
100 36 0.33
101 39 0.36
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACACGACCAACAGTCGGGTACACATAGTAGCCTGCACTTA
GTAATACACATGCGACCAACCATCCAATACACG
Found at i:91783788 original size:14 final size:14
Alignment explanation
Indices: 91783765--91783797 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
91783755 AGCATTGAAA
91783765 GAAA-TAAACTTAT
1 GAAATTAAACTTAT
91783778 GAAATTAAACTTAT
1 GAAATTAAACTTAT
91783792 GAAATT
1 GAAATT
91783798 CTTAGTTAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 4 0.21
14 15 0.79
ACGTcount: A:0.52, C:0.06, G:0.09, T:0.33
Consensus pattern (14 bp):
GAAATTAAACTTAT
Found at i:91785696 original size:26 final size:27
Alignment explanation
Indices: 91785606--91785696 Score: 105
Period size: 27 Copynumber: 3.4 Consensus size: 27
91785596 GTGAAGGAAG
* *
91785606 TACTG-TACTGGTGACTATGTCACATT
1 TACTGTTACTGGTGGCTATGCCACATT
* * *
91785632 CACTGTTACTGGTGGTTATGCCACAAT
1 TACTGTTACTGGTGGCTATGCCACATT
*
91785659 TACTGATACTGGTGGCT-TGCCACATT
1 TACTGTTACTGGTGGCTATGCCACATT
*
91785685 TACTGTTTCTGG
1 TACTGTTACTGG
91785697 CAGCTTTGTT
Statistics
Matches: 53, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
26 22 0.42
27 31 0.58
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.37
Consensus pattern (27 bp):
TACTGTTACTGGTGGCTATGCCACATT
Found at i:91785702 original size:26 final size:26
Alignment explanation
Indices: 91785650--91785702 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
91785640 CTGGTGGTTA
**
91785650 TGCCACAATTACTGATACTGGTGGCT
1 TGCCACAATTACTGATACTGGCAGCT
* * *
91785676 TGCCACATTTACTGTTTCTGGCAGCT
1 TGCCACAATTACTGATACTGGCAGCT
91785702 T
1 T
91785703 TGTTGCGATA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.36
Consensus pattern (26 bp):
TGCCACAATTACTGATACTGGCAGCT
Found at i:91788193 original size:34 final size:34
Alignment explanation
Indices: 91788150--91788223 Score: 130
Period size: 34 Copynumber: 2.2 Consensus size: 34
91788140 ATTTGCATTT
*
91788150 TTGATACTGTTACTGTAATGGGTTAAGGCCCACA
1 TTGATACTGTTACTGAAATGGGTTAAGGCCCACA
91788184 TTGATACTGTTACTGAAATGGGTTAAGGCCCACA
1 TTGATACTGTTACTGAAATGGGTTAAGGCCCACA
*
91788218 CTGATA
1 TTGATA
91788224 TTGGACCGTC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (34 bp):
TTGATACTGTTACTGAAATGGGTTAAGGCCCACA
Found at i:91791110 original size:28 final size:26
Alignment explanation
Indices: 91791060--91791171 Score: 118
Period size: 28 Copynumber: 4.1 Consensus size: 26
91791050 AGCACGGCTG
*
91791060 CCAGAACAGATA-TTGTGACAGAGTCA
1 CCAGAACAGATATTTGTG-CAGAGCCA
91791086 CCAGATACAGATATTTGTAGCAGAGCCA
1 CCAGA-ACAGATATTTGT-GCAGAGCCA
* *
91791114 CCAGAGCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATTTGT-GCAGAGCCA
* *
91791141 CCAGAAACAGATAATTGTGGCATAGCCA
1 CCAG-AACAGATATTTGT-GCAGAGCCA
91791169 CCA
1 CCA
91791172 TAACGCTTCC
Statistics
Matches: 76, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
26 5 0.07
27 30 0.39
28 40 0.53
29 1 0.01
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (26 bp):
CCAGAACAGATATTTGTGCAGAGCCA
Found at i:91791152 original size:55 final size:54
Alignment explanation
Indices: 91791060--91791171 Score: 143
Period size: 55 Copynumber: 2.1 Consensus size: 54
91791050 AGCACGGCTG
* * *
91791060 CCAGAACAGATATTGTGACAGAGTCACCAGATACAGATATTTGTAGCAGAGCCA
1 CCAGAACAGATATTGTGACAGAGCCACCAGAAACAGATAATTGTAGCAGAGCCA
* * * * *
91791114 CCAGAGCAGATATTTGTGGCATAGCCACCAGAAACAGATAATTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGACAGAGCCACCAGAAACAGATAATTGTAGCAGAGCCA
91791169 CCA
1 CCA
91791172 TAACGCTTCC
Statistics
Matches: 49, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
54 11 0.22
55 38 0.78
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (54 bp):
CCAGAACAGATATTGTGACAGAGCCACCAGAAACAGATAATTGTAGCAGAGCCA
Found at i:91792560 original size:23 final size:22
Alignment explanation
Indices: 91792527--91792577 Score: 84
Period size: 23 Copynumber: 2.3 Consensus size: 22
91792517 CTTTGGCCGG
*
91792527 CCAACTCTTTCCCCTCAAGAGT
1 CCAACACTTTCCCCTCAAGAGT
91792549 CCAACANCTTTCCCCTCAAGAGT
1 CCAACA-CTTTCCCCTCAAGAGT
91792572 CCAACA
1 CCAACA
91792578 TTCGGCCAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
22 5 0.19
23 22 0.81
ACGTcount: A:0.27, C:0.41, G:0.08, T:0.22
Consensus pattern (22 bp):
CCAACACTTTCCCCTCAAGAGT
Found at i:91796966 original size:50 final size:50
Alignment explanation
Indices: 91796778--91796970 Score: 210
Period size: 50 Copynumber: 3.8 Consensus size: 50
91796768 ATTGTGAGTA
* * * *
91796778 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACT-GTTAAGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTATCAGA-TGGTTAGGT
* * * * * * * *
91796828 CGCATGTGTAGTACTAAGTGCATGCTACTATGCATACTCA-ATGACTTCGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTA-TCAGATG-GTTAGGT
* *
91796879 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTATCAGATGGTTAGGT
*
91796929 CACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTATCAGAT
91796971 AGCTTCGGCT
Statistics
Matches: 116, Mismatches: 23, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
49 1 0.01
50 77 0.66
51 38 0.33
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (50 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTATCAGATGGTTAGGT
Found at i:91796977 original size:101 final size:101
Alignment explanation
Indices: 91796778--91796961 Score: 289
Period size: 101 Copynumber: 1.8 Consensus size: 101
91796768 ATTGTGAGTA
* * *
91796778 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTGAAGTCACATGTGTAGTACT
*
91796843 AAGTGCATGCTACTATGCATACTCAATGACTTCGAT
66 AAGTGCAGGCTACTATGCATACTCAATGACTTCGAT
* * *
91796879 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TGGTGAGGTCACGTGTGTAGTAC
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GTGAAGTCACATGTGTAGTAC
91796943 TAAGTGCAGGCTACTATGC
65 TAAGTGCAGGCTACTATGC
91796962 GTATCAGATA
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
100 1 0.01
101 74 0.99
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.29
Consensus pattern (101 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTGAAGTCACATGTGTAGTACT
AAGTGCAGGCTACTATGCATACTCAATGACTTCGAT
Found at i:91804430 original size:50 final size:49
Alignment explanation
Indices: 91804317--91804441 Score: 169
Period size: 49 Copynumber: 2.5 Consensus size: 49
91804307 TGACGTCACG
* * * * *
91804317 TGTGTAGTACTAAGTGTAGACTACTACATGTACCGGATTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGACTGTTAGTCGCA
* *
91804366 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGACTGTT-AGTCGCA
*
91804416 TGTGTAGTACTAAGTACAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
91804442 TGCGTACTCA
Statistics
Matches: 67, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
49 36 0.54
50 31 0.46
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGACTGTTAGTCGCA
Found at i:91804472 original size:131 final size:130
Alignment explanation
Indices: 91804337--91804572 Score: 312
Period size: 131 Copynumber: 1.8 Consensus size: 130
91804327 TAAGTGTAGA
* * * * *
91804337 CTACTACATGTACCGGATTGTTG-GTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA
1 CTACTACATGTACCAGA-TGGTGAGTCACATGTGTAGTACTAAGTGCAGACTACTACATGTACCA
*
91804401 TACTGTTAAGTCGCATGTGTAGTACTAAGTACAGGCTACTATGCGTACTCAATGACTTCGATCAC
65 GACTGTT-AGTCGCATGTGTAGTACTAAGTACAGGCTACTATGCGTACTCAATGACTTCGATCAC
91804466 GG
129 GG
* * * * *
91804468 CTACTACGTGTATCAGATGGTGACGTCACGTGTGTAGTACTAAGTGTAGACTACTACATGTACCG
1 CTACTACATGTACCAGATGGTGA-GTCACATGTGTAGTACTAAGTGCAGACTACTACATGTACCA
* * *
91804533 GATTGTTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
65 GACTGTTAGTCGCATGTGTAGTACTAAGTACAGGCTACTA
91804573 CGTGTACCAT
Statistics
Matches: 89, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
130 4 0.04
131 45 0.51
132 40 0.45
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (130 bp):
CTACTACATGTACCAGATGGTGAGTCACATGTGTAGTACTAAGTGCAGACTACTACATGTACCAG
ACTGTTAGTCGCATGTGTAGTACTAAGTACAGGCTACTATGCGTACTCAATGACTTCGATCACGG
Found at i:91804489 original size:181 final size:181
Alignment explanation
Indices: 91804185--91804934 Score: 1500
Period size: 181 Copynumber: 4.1 Consensus size: 181
91804175 TGAGTACACG
91804185 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCATGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCATGTGTAGTACTAAGT
91804250 ACAGGCTACTATGCGTACTCAATGACTTCGATCACGGCTACTACGTGTATCAGATGGTGACGTCA
66 ACAGGCTACTATGCGTACTCAATGACTTCGATCACGGCTACTACGTGTATCAGATGGTGACGTCA
91804315 CGTGTGTAGTACTAAGTGTAGACTACTACATGTACCGGATTGTTGGTCGCA
131 CGTGTGTAGTACTAAGTGTAGACTACTACATGTACCGGATTGTTGGTCGCA
91804366 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCATGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCATGTGTAGTACTAAGT
91804431 ACAGGCTACTATGCGTACTCAATGACTTCGATCACGGCTACTACGTGTATCAGATGGTGACGTCA
66 ACAGGCTACTATGCGTACTCAATGACTTCGATCACGGCTACTACGTGTATCAGATGGTGACGTCA
91804496 CGTGTGTAGTACTAAGTGTAGACTACTACATGTACCGGATTGTTGGTCGCA
131 CGTGTGTAGTACTAAGTGTAGACTACTACATGTACCGGATTGTTGGTCGCA
91804547 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCATGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCATGTGTAGTACTAAGT
91804612 ACAGGCTACTATGCGTACTCAATGACTTCGATCACGGCTACTACGTGTATCAGATGGTGACGTCA
66 ACAGGCTACTATGCGTACTCAATGACTTCGATCACGGCTACTACGTGTATCAGATGGTGACGTCA
91804677 CGTGTGTAGTACTAAGTGTAGACTACTACATGTACCGGATTGTTGGTCGCA
131 CGTGTGTAGTACTAAGTGTAGACTACTACATGTACCGGATTGTTGGTCGCA
91804728 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCATGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCATGTGTAGTACTAAGT
91804793 ACAGGCTACTATGCGTACTCAATGACTTCGATCACGGCTACTACGTGTATCAGATGGTGACGTCA
66 ACAGGCTACTATGCGTACTCAATGACTTCGATCACGGCTACTACGTGTATCAGATGGTGACGTCA
91804858 CGTGTGTAGTACTAAGTGTAGACTACTACATGTACCGGATTGTTGGTCGCA
131 CGTGTGTAGTACTAAGTGTAGACTACTACATGTACCGGATTGTTGGTCGCA
91804909 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
91804935 TGCGTATCAG
Statistics
Matches: 569, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
181 569 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (181 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCATGTGTAGTACTAAGT
ACAGGCTACTATGCGTACTCAATGACTTCGATCACGGCTACTACGTGTATCAGATGGTGACGTCA
CGTGTGTAGTACTAAGTGTAGACTACTACATGTACCGGATTGTTGGTCGCA
Found at i:91804611 original size:50 final size:49
Alignment explanation
Indices: 91804498--91804622 Score: 169
Period size: 49 Copynumber: 2.5 Consensus size: 49
91804488 TGACGTCACG
* * * * *
91804498 TGTGTAGTACTAAGTGTAGACTACTACATGTACCGGATTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGACTGTTAGTCGCA
* *
91804547 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGACTGTT-AGTCGCA
*
91804597 TGTGTAGTACTAAGTACAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
91804623 TGCGTACTCA
Statistics
Matches: 67, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
49 36 0.54
50 31 0.46
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGACTGTTAGTCGCA
Found at i:91804653 original size:131 final size:130
Alignment explanation
Indices: 91804518--91804753 Score: 312
Period size: 131 Copynumber: 1.8 Consensus size: 130
91804508 TAAGTGTAGA
* * * * *
91804518 CTACTACATGTACCGGATTGTTG-GTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA
1 CTACTACATGTACCAGA-TGGTGAGTCACATGTGTAGTACTAAGTGCAGACTACTACATGTACCA
*
91804582 TACTGTTAAGTCGCATGTGTAGTACTAAGTACAGGCTACTATGCGTACTCAATGACTTCGATCAC
65 GACTGTT-AGTCGCATGTGTAGTACTAAGTACAGGCTACTATGCGTACTCAATGACTTCGATCAC
91804647 GG
129 GG
* * * * *
91804649 CTACTACGTGTATCAGATGGTGACGTCACGTGTGTAGTACTAAGTGTAGACTACTACATGTACCG
1 CTACTACATGTACCAGATGGTGA-GTCACATGTGTAGTACTAAGTGCAGACTACTACATGTACCA
* * *
91804714 GATTGTTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
65 GACTGTTAGTCGCATGTGTAGTACTAAGTACAGGCTACTA
91804754 CGTGTACCAT
Statistics
Matches: 89, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
130 4 0.04
131 45 0.51
132 40 0.45
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (130 bp):
CTACTACATGTACCAGATGGTGAGTCACATGTGTAGTACTAAGTGCAGACTACTACATGTACCAG
ACTGTTAGTCGCATGTGTAGTACTAAGTACAGGCTACTATGCGTACTCAATGACTTCGATCACGG
Found at i:91804792 original size:50 final size:49
Alignment explanation
Indices: 91804679--91804803 Score: 169
Period size: 49 Copynumber: 2.5 Consensus size: 49
91804669 TGACGTCACG
* * * * *
91804679 TGTGTAGTACTAAGTGTAGACTACTACATGTACCGGATTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGACTGTTAGTCGCA
* *
91804728 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGACTGTT-AGTCGCA
*
91804778 TGTGTAGTACTAAGTACAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
91804804 TGCGTACTCA
Statistics
Matches: 67, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
49 36 0.54
50 31 0.46
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGACTGTTAGTCGCA
Found at i:91804834 original size:131 final size:130
Alignment explanation
Indices: 91804699--91804940 Score: 324
Period size: 131 Copynumber: 1.8 Consensus size: 130
91804689 TAAGTGTAGA
* * * * *
91804699 CTACTACATGTACCGGATTGTTG-GTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA
1 CTACTACATGTACCAGA-TGGTGAGTCACATGTGTAGTACTAAGTGCAGACTACTACATGTACCA
*
91804763 TACTGTTAAGTCGCATGTGTAGTACTAAGTACAGGCTACTATGCGTACTCAATGACTTCGATCAC
65 GACTGTT-AGTCGCATGTGTAGTACTAAGTACAGGCTACTATGCGTACTCAATGACTTCGATCAC
91804828 GG
129 GG
* * * * *
91804830 CTACTACGTGTATCAGATGGTGACGTCACGTGTGTAGTACTAAGTGTAGACTACTACATGTACCG
1 CTACTACATGTACCAGATGGTGA-GTCACATGTGTAGTACTAAGTGCAGACTACTACATGTACCA
* * *
91804895 GATTGTTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTA
65 GACTGTTAGTCGCATGTGTAGTACTAAGTACAGGCTACTATGCGTA
91804941 TCAGATAGCT
Statistics
Matches: 95, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
130 4 0.04
131 51 0.54
132 40 0.42
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (130 bp):
CTACTACATGTACCAGATGGTGAGTCACATGTGTAGTACTAAGTGCAGACTACTACATGTACCAG
ACTGTTAGTCGCATGTGTAGTACTAAGTACAGGCTACTATGCGTACTCAATGACTTCGATCACGG
Found at i:91806964 original size:12 final size:12
Alignment explanation
Indices: 91806933--91807042 Score: 61
Period size: 11 Copynumber: 9.0 Consensus size: 12
91806923 ATAAATAGTT
*
91806933 TATAATAAAATGA
1 TATAAT-AAATAA
91806946 TAT-ATAAATAA
1 TATAATAAATAA
91806957 TATAATAAATAA
1 TATAATAAATAA
*
91806969 TAAAAATAATATAA
1 T-ATAATAA-ATAA
*
91806983 TATGTAATAATTTACA
1 TA--TAATAA-ATA-A
*
91806999 TATAA-ATATAA
1 TATAATAAATAA
91807010 -AT-ATAAATAA
1 TATAATAAATAA
91807020 TAT-ATAAAGT-A
1 TATAATAAA-TAA
*
91807031 TTTAATAAATAA
1 TATAATAAATAA
91807043 ATTATGCAAA
Statistics
Matches: 78, Mismatches: 8, Indels: 23
0.72 0.07 0.21
Matches are distributed among these distances:
9 1 0.01
10 7 0.09
11 20 0.26
12 20 0.26
13 11 0.14
14 8 0.10
15 8 0.10
16 3 0.04
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (12 bp):
TATAATAAATAA
Found at i:91806975 original size:21 final size:23
Alignment explanation
Indices: 91806933--91806984 Score: 72
Period size: 21 Copynumber: 2.3 Consensus size: 23
91806923 ATAAATAGTT
*
91806933 TATAATAAAATGATATATAAATAA
1 TATAAT-AAATGATATAAAAATAA
91806957 TATAATAAAT-A-ATAAAAATAA
1 TATAATAAATGATATAAAAATAA
91806978 TATAATA
1 TATAATA
91806985 TGTAATAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 16 0.59
22 1 0.04
23 4 0.15
24 6 0.22
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (23 bp):
TATAATAAATGATATAAAAATAA
Found at i:91807019 original size:16 final size:18
Alignment explanation
Indices: 91807000--91807041 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
91806990 TAATTTACAT
91807000 ATAAATATAAA-TA-TAA
1 ATAAATATAAAGTATTAA
*
91807016 ATAATATATAAAGTATTTA
1 ATAA-ATATAAAGTATTAA
91807035 ATAAATA
1 ATAAATA
91807042 AATTATGCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 4 0.18
17 7 0.32
18 5 0.23
19 6 0.27
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (18 bp):
ATAAATATAAAGTATTAA
Found at i:91807022 original size:21 final size:20
Alignment explanation
Indices: 91806947--91807023 Score: 66
Period size: 21 Copynumber: 3.7 Consensus size: 20
91806937 ATAAAATGAT
*
91806947 ATATAAATAATATAATAAATA
1 ATATAAATAATATAATATA-A
* *
91806968 ATAAAAATAATATAATATGTA
1 ATATAAATAATATAATAT-AA
**
91806989 ATA-ATTTACATATAAATATAA
1 ATATAAATA-ATAT-AATATAA
91807010 ATATAAATAATATA
1 ATATAAATAATATA
91807024 TAAAGTATTT
Statistics
Matches: 44, Mismatches: 8, Indels: 9
0.72 0.13 0.15
Matches are distributed among these distances:
20 4 0.09
21 32 0.73
22 8 0.18
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.35
Consensus pattern (20 bp):
ATATAAATAATATAATATAA
Found at i:91814446 original size:47 final size:45
Alignment explanation
Indices: 91814392--91814583 Score: 213
Period size: 47 Copynumber: 4.1 Consensus size: 45
91814382 TAGGATTTTG
* * *
91814392 TGTGATGAATGTGAATGTGTATATATGAGATAAGTCCGAATGGCCAA
1 TGTGATGAATGTGAA--TGCATATATGTGATAAGGCCGAATGGCCAA
*
91814439 TGTGATGAATGTGACATGCATATATGTGATAAGGCGGAATGGCCAA
1 TGTGATGAATGTGA-ATGCATATATGTGATAAGGCCGAATGGCCAA
*
91814485 TGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAA
1 TGTGATGAATGTGA--ATGCATATATGTGATAAGGCCGAATGGCCAA
* * * * * * *
91814532 TGTGGTAAATATGAACATGCATATATGTGGTAAAGCTGAATGGCTAA
1 TGTGATGAATGTG-A-ATGCATATATGTGATAAGGCCGAATGGCCAA
91814579 TGTGA
1 TGTGA
91814584 AATATGTATG
Statistics
Matches: 127, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
46 40 0.31
47 85 0.67
48 2 0.02
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (45 bp):
TGTGATGAATGTGAATGCATATATGTGATAAGGCCGAATGGCCAA
Found at i:91814491 original size:93 final size:94
Alignment explanation
Indices: 91814392--91814583 Score: 251
Period size: 93 Copynumber: 2.1 Consensus size: 94
91814382 TAGGATTTTG
** * * * *
91814392 TGTGATGAATGTGAATGTGTATATATGAGATAAGTCCGAATGGCCAATGTGATGAATGTG-ACAT
1 TGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATAAATATGAACAT
*
91814456 GCATATATGTGATAAGGCGGAATGGCCAA
66 GCATATATGTGATAAAGCGGAATGGCCAA
* * * *
91814485 TGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTAAATATGAACAT
1 TGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATAAATATGAACAT
* * *
91814550 GCATATATGTGGTAAAGCTGAATGGCTAA
66 GCATATATGTGATAAAGCGGAATGGCCAA
91814579 TGTGA
1 TGTGA
91814584 AATATGTATG
Statistics
Matches: 84, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
93 50 0.60
94 34 0.40
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (94 bp):
TGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATAAATATGAACAT
GCATATATGTGATAAAGCGGAATGGCCAA
Found at i:91814613 original size:48 final size:48
Alignment explanation
Indices: 91814553--91814881 Score: 534
Period size: 48 Copynumber: 6.8 Consensus size: 48
91814543 TGAACATGCA
*
91814553 TATATGTGGTAAAGCTGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
91814601 TATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
91814649 TATATGTGGTAAAGCCGAAAGGCTAATGTGAAATATGTATGAGGTATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
91814697 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
91814745 TATATGTGGTAAAGCCGAATGGCTAATGTGAGATATGTATGAGATACG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
91814793 CATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
91814843 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
91814882 GGCGATGTGC
Statistics
Matches: 259, Mismatches: 18, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
47 1 0.00
48 215 0.83
49 3 0.01
50 39 0.15
51 1 0.00
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:91815131 original size:37 final size:37
Alignment explanation
Indices: 91815027--91815132 Score: 176
Period size: 37 Copynumber: 2.9 Consensus size: 37
91815017 GGAAACATAT
*
91815027 TCCGGGTAAGACCCGATGACTACGTGTGGAAATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
91815064 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
91815101 TCCGGGTAAGACCCGATAACTTCGTGTGGAGA
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGA
91815133 CTTCGTCTGA
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:91822159 original size:44 final size:44
Alignment explanation
Indices: 91822110--91822995 Score: 1005
Period size: 44 Copynumber: 20.3 Consensus size: 44
91822100 AGATGACATC
* *
91822110 TGGCATCTCTGTATTGTCAAAGAGCAGATCAAAGATAGCAAATT
1 TGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATT
* *
91822154 TGGCATCTCTGTATTGTCAGGGAGCAGATCGAAGATAGCAGATT
1 TGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATT
* * *
91822198 TGGTATCTCTGTATTGTCAGAGAACAGCTCAAAGATAGCAGATT
1 TGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATT
* * *
91822242 TGGCATCTCTGTATTGTCAGAGAGCAGATCGAATATAGTAGATT
1 TGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATT
* *
91822286 TGGCGTCTCTGTATTGTCAAAGAGCAGATCAAAGATAGCAGATT
1 TGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATT
* * * * * *
91822330 TGGCATCTCTGTAGTGACAGAGAGTAGATCGAAGAT-G-ACATC
1 TGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATT
** * *
91822372 TGGCATCTCTGTATTAACAGAGAGCAGACCAAAGATAGAAGATT
1 TGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATT
*
91822416 TGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
1 TGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATT
* * *
91822460 TGGTATCTCTGTATTGTTAGAGAACAGATCAAAGATAGCAGATT
1 TGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATT
* * * * *
91822504 TGACATCTCTGTATTCTTAGAAAGCAGATCGAAGATAGCAGATT
1 TGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATT
* * *
91822548 TGGCGTCTTTGTATTGTCAGAGAGCAGATCAAAGATAGTAGATT
1 TGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATT
* * * * ** * *
91822592 TGGTATCTCTGTAGTGACAGAGAGTAGATTGAAGAT-G-ACATC
1 TGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATT
* * *
91822634 TGGCATCTCTGTATTAAT-GGAGAGTAGAT-AGAAGATAGCAGATT
1 TGGCATCTCTGTATT-GTCAGAGAGCAGATCA-AAGATAGCAGATT
* * * * * *
91822678 TGGCATCTCTGTAGTGACAGAGAGTAGATCGAAGAT-G-ACATC
1 TGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATT
* * ** * *
91822720 TGGCATCTCTATAATAACGGAGAGCAGATCAAAGATAACAGATT
1 TGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATT
* * * * *
91822764 TTGCATCTCCGTATTGTCAAAGAGCAGATCGAAGATAGTAGATT
1 TGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATT
*
91822808 TGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATT
1 TGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATT
* * *
91822852 TGGCACCTCTGTATTGTTAGAGAGCAGATCGAAGATAGCAGATT
1 TGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATT
* * *
91822896 TGGTATCTCTATATTGTCAGAGAGCAGATCGAAGATAGCAGATT
1 TGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATT
* * * * * * *
91822940 TAGCGTCTTTGTATTATTAGAGAGCAGATCAAGGATAGCTGATT
1 TGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATT
*
91822984 TGACATCTCTGT
1 TGGCATCTCTGT
91822996 GTTGGTGGGG
Statistics
Matches: 701, Mismatches: 131, Indels: 20
0.82 0.15 0.02
Matches are distributed among these distances:
42 98 0.14
43 5 0.01
44 598 0.85
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (44 bp):
TGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATT
Found at i:91822563 original size:262 final size:261
Alignment explanation
Indices: 91822091--91822995 Score: 1167
Period size: 262 Copynumber: 3.5 Consensus size: 261
91822081 AGGGGATAAT
** *
91822091 GTAGATC-ACAGATGACATCTGGCATCTCTGTATTGTCAAAGAGCAGATCAAAGATAGCAA-ATT
1 GTAGATCGA-AGATGACATCTGGCATCTCTGTATTAACAGAGAGCAGATCAAAGATAG-AAGATT
* *
91822154 TGGCATCTCTGTATTGTCAGGGAGCAGATCGAAGATAGCAGATTTGGTATCTCTGTATTGTCAGA
64 TGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGA
* * *
91822219 GAACAGCTCAAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAATATAGTAGA
129 GAACAGATCAAAGATAGCAGATTT-GCATCTCTGTATTGTCAGAAAGCAGATCGAAGATAGTAGA
*
91822284 TTTGGCGTCTCTGTATTGTCAAAGAGCAGATCAAAGATAGCAGATTTGGCATCTCTGTAGTGACA
193 TTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGCATCTCTGTAGTGACA
91822349 GAGA
258 GAGA
*
91822353 GTAGATCGAAGATGACATCTGGCATCTCTGTATTAACAGAGAGCAGACCAAAGATAGAAGATTTG
1 GTAGATCGAAGATGACATCTGGCATCTCTGTATTAACAGAGAGCAGATCAAAGATAGAAGATTTG
* *
91822418 GCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGTATCTCTGTATTGTTAGAGA
66 GCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGA
* * *
91822483 ACAGATCAAAGATAGCAGATTTGACATCTCTGTATTCTTAGAAAGCAGATCGAAGATAGCAGATT
131 ACAGATCAAAGATAGCAGATTTG-CATCTCTGTATTGTCAGAAAGCAGATCGAAGATAGTAGATT
* * *
91822548 TGGCGTCTTTGTATTGTCAGAGAGCAGATCAAAGATAGTAGATTTGGTATCTCTGTAGTGACAGA
195 TGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGCATCTCTGTAGTGACAGA
91822613 GA
260 GA
* ** * *
91822615 GTAGATTGAAGATGACATCTGGCATCTCTGTATTAATGGAGAGTAGAT-AGAAGATAGCAGATTT
1 GTAGATCGAAGATGACATCTGGCATCTCTGTATTAACAGAGAGCAGATCA-AAGATAGAAGATTT
* * * * * * * ** *
91822679 GGCATCTCTGTAGTGACAGAGAGTAGATCGAAGAT-G-ACATCTGGCATCTCTATAATAACGGAG
65 GGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAG
* * *
91822742 AGCAGATCAAAGATAACAGATTTTGCATCTCCGTATTGTCA-AAGAGCAGATCGAAGATAGTAGA
130 AACAGATCAAAGATAGCAGA-TTTGCATCTCTGTATTGTCAGAA-AGCAGATCGAAGATAGTAGA
* * **
91822806 TTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGCACCTCTGTATTGTTA
193 TTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGCATCTCTGTAGTGACA
91822871 GAGA
258 GAGA
* * * * * ** * *
91822875 GCAGATCGAAGATAGCAGATTTGGTATCTCTATATTGTCAGAGAGCAGATCGAAGATAGCAGATT
1 GTAGATCGAAGAT-G-ACATCTGGCATCTCTGTATTAACAGAGAGCAGATCAAAGATAGAAGATT
* * * * * * *
91822940 TAGCGTCTTTGTATTATTAGAGAGCAGATC-AAGGATAGCTGATTTGACATCTCTGT
64 TGGCATCTCTGTATTGTCAGAGAGCAGATCGAA-GATAGCAGATTTGGCATCTCTGT
91822996 GTTGGTGGGG
Statistics
Matches: 559, Mismatches: 72, Indels: 22
0.86 0.11 0.03
Matches are distributed among these distances:
259 2 0.00
260 141 0.25
261 12 0.02
262 390 0.70
263 2 0.00
264 12 0.02
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (261 bp):
GTAGATCGAAGATGACATCTGGCATCTCTGTATTAACAGAGAGCAGATCAAAGATAGAAGATTTG
GCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGA
ACAGATCAAAGATAGCAGATTTGCATCTCTGTATTGTCAGAAAGCAGATCGAAGATAGTAGATTT
GGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGCATCTCTGTAGTGACAGAG
A
Found at i:91824285 original size:93 final size:92
Alignment explanation
Indices: 91824126--91824306 Score: 301
Period size: 93 Copynumber: 2.0 Consensus size: 92
91824116 AATAAGCTTT
* * *
91824126 AAAACGGCATCGTTTTAATGCTGAGGATCCGCATGTTGACCTGTGACTCGGGGAGGATCCGCGTG
1 AAAACGACATCGTTTTAATGCTGAGGATCCGCATGTTGACCTATGACCCGGGGAGGATCCGCGTG
91824191 TTTTTTGGTAAATGGGCTAATTGCCTTC
66 -TTTTTGGTAAATGGGCTAATTGCCTTC
*
91824219 AAAACGACATCGTTTTAATGCTGAGGATCCGCGTGTTGA-CTCATGACCCGGGGAGGATCCGCGT
1 AAAACGACATCGTTTTAATGCTGAGGATCCGCATGTTGACCT-ATGACCCGGGGAGGATCCGCGT
91824283 GTTTTTGGTAAATGGGCTAATTGC
65 GTTTTTGGTAAATGGGCTAATTGC
91824307 TGTTTGAGCC
Statistics
Matches: 83, Mismatches: 4, Indels: 3
0.92 0.04 0.03
Matches are distributed among these distances:
92 25 0.30
93 58 0.70
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (92 bp):
AAAACGACATCGTTTTAATGCTGAGGATCCGCATGTTGACCTATGACCCGGGGAGGATCCGCGTG
TTTTTGGTAAATGGGCTAATTGCCTTC
Found at i:91824928 original size:279 final size:279
Alignment explanation
Indices: 91824428--91824984 Score: 1105
Period size: 279 Copynumber: 2.0 Consensus size: 279
91824418 GTATAAGGTT
91824428 TGTTTTGTGAACGACGCCGTTTTGGGATTAGGGCAAATTGCCCAGTGAGTCCCTTGTAGTCTTGT
1 TGTTTTGTGAACGACGCCGTTTTGGGATTAGGGCAAATTGCCCAGTGAGTCCCTTGTAGTCTTGT
91824493 GTGCATTCCAATTAGGCCTAAACCCTTTTTTGTTATTTTAAAATTAGCCCTAAAACTTTAGTTTT
66 GTGCATTCCAATTAGGCCTAAACCCTTTTTTGTTATTTTAAAATTAGCCCTAAAACTTTAGTTTT
91824558 ATTTAATTTTAATCCTTTTAAATATTTTTGCATAATTTATTTATTAAATACCTTATATATTATTT
131 ATTTAATTTTAATCCTTTTAAATATTTTTGCATAATTTATTTATTAAATACCTTATATATTATTT
91824623 ATTTTACTATATTTATATGTATATTATTACATATCAAATTGTTTTTATTATTTTTATATTATTTA
196 ATTTTACTATATTTATATGTATATTATTACATATCAAATTGTTTTTATTATTTTTATATTATTTA
91824688 TATTATTATACATATTATC
261 TATTATTATACATATTATC
*
91824707 TGTTTTGTGAACGGCGCCGTTTTGGGATTAGGGCAAATTGCCCAGTGAGTCCCTTGTAGTCTTGT
1 TGTTTTGTGAACGACGCCGTTTTGGGATTAGGGCAAATTGCCCAGTGAGTCCCTTGTAGTCTTGT
91824772 GTGCATTCCAATTAGGCCTAAACCCTTTTTTGTTATTTTAAAATTAGCCCTAAAACTTTAGTTTT
66 GTGCATTCCAATTAGGCCTAAACCCTTTTTTGTTATTTTAAAATTAGCCCTAAAACTTTAGTTTT
91824837 ATTTAATTTTAATCCTTTTAAATATTTTTGCATAATTTATTTATTAAATACCTTATATATTATTT
131 ATTTAATTTTAATCCTTTTAAATATTTTTGCATAATTTATTTATTAAATACCTTATATATTATTT
91824902 ATTTTACTATATTTATATGTATATTATTACATATCAAATTGTTTTTATTATTTTTATATTATTTA
196 ATTTTACTATATTTATATGTATATTATTACATATCAAATTGTTTTTATTATTTTTATATTATTTA
91824967 TATTATTATACATATTAT
261 TATTATTATACATATTAT
91824985 TTATTAATTT
Statistics
Matches: 277, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
279 277 1.00
ACGTcount: A:0.28, C:0.12, G:0.11, T:0.49
Consensus pattern (279 bp):
TGTTTTGTGAACGACGCCGTTTTGGGATTAGGGCAAATTGCCCAGTGAGTCCCTTGTAGTCTTGT
GTGCATTCCAATTAGGCCTAAACCCTTTTTTGTTATTTTAAAATTAGCCCTAAAACTTTAGTTTT
ATTTAATTTTAATCCTTTTAAATATTTTTGCATAATTTATTTATTAAATACCTTATATATTATTT
ATTTTACTATATTTATATGTATATTATTACATATCAAATTGTTTTTATTATTTTTATATTATTTA
TATTATTATACATATTATC
Found at i:91825013 original size:95 final size:94
Alignment explanation
Indices: 91824899--91825121 Score: 374
Period size: 95 Copynumber: 2.3 Consensus size: 94
91824889 TTATATATTA
91824899 TTTATTTTACTATATTTATATGTATATTATTACATATCAAATTGTTTTTATTATTTTTATATTAT
1 TTTATTTTACTATATTTATATGTATATTATTACATATCAAATTGTTTTTATTATTTTTATATTAT
*
91824964 TTATATTATTATACATATTATTTATTAATT
66 TTATATTATTATACATATTATTTA-TAAAT
91824994 TTTATTTTACTATATTTATATGTATATTATTACATATCAAATTGTTTTTATTATTTTTATATTAT
1 TTTATTTTACTATATTTATATGTATATTATTACATATCAAATTGTTTTTATTATTTTTATATTAT
*
91825059 TTATATTATTATACATTTTATTTATAAAT
66 TTATATTATTATACATATTATTTATAAAT
* *
91825088 TTTATTATACATATATTTTACTATATATATTATT
1 TTTATTTTAC-TATA-TTTA-TATGTATATTATT
91825122 CCCTACATTT
Statistics
Matches: 121, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
94 13 0.11
95 92 0.76
96 4 0.03
97 12 0.10
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (94 bp):
TTTATTTTACTATATTTATATGTATATTATTACATATCAAATTGTTTTTATTATTTTTATATTAT
TTATATTATTATACATATTATTTATAAAT
Found at i:91825079 original size:12 final size:12
Alignment explanation
Indices: 91825064--91825099 Score: 54
Period size: 13 Copynumber: 2.9 Consensus size: 12
91825054 ATTATTTATA
91825064 TTATTATACATT
1 TTATTATACATT
*
91825076 TTATTTATAAATT
1 TTA-TTATACATT
91825089 TTATTATACAT
1 TTATTATACAT
91825100 ATATTTTACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (12 bp):
TTATTATACATT
Found at i:91825157 original size:95 final size:94
Alignment explanation
Indices: 91824899--91825161 Score: 302
Period size: 95 Copynumber: 2.8 Consensus size: 94
91824889 TTATATATTA
* * * * *
91824899 TTTATTTTACTATATTTATATGTATATTATTACATATCAAATTGTTTTTATTATTTTTATATTAT
1 TTTATTATACTATATTTATATATATATTATTACATATC-AATTGTTTTTATAAATTATATATTAT
*
91824964 TTATATTATTATACATATTATTTATTAATT
65 TTATATTATTATACATATTATTTATTAAAT
* * * * *
91824994 TTTATTTTACTATATTTATATGTATATTATTACATATCAAATTGTTTTTATTATTTTTATATTAT
1 TTTATTATACTATATTTATATATATATTATTACATATC-AATTGTTTTTATAAATTATATATTAT
*
91825059 TTATATTATTATACATTTTATTTA-TAAAT
65 TTATATTATTATACATATTATTTATTAAAT
* * *
91825088 TTTATTATACATATATTTTACTATATATATTATTCCCTA-C-ATT-TTTATTATAAATTATGTAT
1 TTTATTATAC-TATA-TTTA-TATATATATTATTACATATCAATTGTTT-TTATAAATTATATAT
91825150 TATTT-TATTATT
62 TATTTATATTATT
91825162 CATTAATTGT
Statistics
Matches: 154, Mismatches: 10, Indels: 10
0.89 0.06 0.06
Matches are distributed among these distances:
93 10 0.06
94 32 0.21
95 92 0.60
96 5 0.03
97 15 0.10
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (94 bp):
TTTATTATACTATATTTATATATATATTATTACATATCAATTGTTTTTATAAATTATATATTATT
TATATTATTATACATATTATTTATTAAAT
Found at i:91825238 original size:22 final size:22
Alignment explanation
Indices: 91825196--91825238 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
91825186 TTTCTTAATT
*
91825196 ATTATTAAATAATATATATATC
1 ATTATTAAATAATATACATATC
91825218 ATTATTAAATAAT-TAGCATAT
1 ATTATTAAATAATATA-CATAT
91825239 TATACAAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 2 0.11
22 17 0.89
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (22 bp):
ATTATTAAATAATATACATATC
Found at i:91827617 original size:17 final size:18
Alignment explanation
Indices: 91827597--91827635 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
91827587 ATAATAGGAG
*
91827597 TAAAAATGT-AATTTTGC
1 TAAAAATGTAAATTGTGC
*
91827614 TAAAAGTGTAAATTGTGC
1 TAAAAATGTAAATTGTGC
91827632 TAAA
1 TAAA
91827636 TTGAATGAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.44, C:0.05, G:0.15, T:0.36
Consensus pattern (18 bp):
TAAAAATGTAAATTGTGC
Found at i:91827978 original size:42 final size:42
Alignment explanation
Indices: 91827920--91828036 Score: 119
Period size: 43 Copynumber: 2.8 Consensus size: 42
91827910 TAGGATTACT
* * *
91827920 GAGATTATGTGTAAGACCATATCTAGGATATGATATCGACAT
1 GAGATTACGTGTAAGACCATATCTAGGATATGACATCGACAC
* * * * *
91827962 GAGACTT-CGTGTAAGACCATAGCTGGGCTATTGGCATCGATAC
1 GAGA-TTACGTGTAAGACCATATCTAGGATA-TGACATCGACAC
**
91828005 GAGATTATATGTAAGACCATATCTAGGATATG
1 GAGATTACGTGTAAGACCATATCTAGGATATG
91828037 GCATTGGTAC
Statistics
Matches: 59, Mismatches: 13, Indels: 6
0.76 0.17 0.08
Matches are distributed among these distances:
42 27 0.46
43 32 0.54
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (42 bp):
GAGATTACGTGTAAGACCATATCTAGGATATGACATCGACAC
Found at i:91829664 original size:3 final size:3
Alignment explanation
Indices: 91829656--91829733 Score: 54
Period size: 3 Copynumber: 26.3 Consensus size: 3
91829646 CAATAACAAG
* **
91829656 AAT AAT AAT -GT AAAT AAT AAT -AT AGG AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
91829700 AAT -AT AAGT AAC AAC CAC AAT AAT AAT AAT AAT A
1 AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT A
91829734 TTGAAATGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 10
0.75 0.12 0.12
Matches are distributed among these distances:
2 5 0.08
3 50 0.83
4 5 0.08
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:91829671 original size:12 final size:13
Alignment explanation
Indices: 91829654--91829705 Score: 63
Period size: 12 Copynumber: 4.1 Consensus size: 13
91829644 AACAATAACA
*
91829654 AGAATAATAATGT
1 AGAATAATAATAT
91829667 A-AATAATAATAT
1 AGAATAATAATAT
91829679 AGGAATAATAATA-
1 A-GAATAATAATAT
*
91829692 ATAATAATAATAT
1 AGAATAATAATAT
91829705 A
1 A
91829706 AGTAACAACC
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
12 21 0.62
13 3 0.09
14 10 0.29
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (13 bp):
AGAATAATAATAT
Found at i:91829689 original size:26 final size:26
Alignment explanation
Indices: 91829655--91829705 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
91829645 ACAATAACAA
*
91829655 GAATAATAAT-GTAAATAATAATATAG
1 GAATAATAATAAT-AATAATAATATAG
91829681 GAATAATAATAATAATAATAATATA
1 GAATAATAATAATAATAATAATATA
91829706 AGTAACAACC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.61, C:0.00, G:0.08, T:0.31
Consensus pattern (26 bp):
GAATAATAATAATAATAATAATATAG
Found at i:91829798 original size:17 final size:18
Alignment explanation
Indices: 91829778--91829829 Score: 52
Period size: 17 Copynumber: 2.8 Consensus size: 18
91829768 GTAAATAAGC
91829778 AAAATAAATAAAAAAG-A
1 AAAATAAATAAAAAAGAA
***
91829795 AAAAGGCATAATAAAAGAA
1 AAAATAAATAA-AAAAGAA
91829814 AATAATAAATAAAAAA
1 AA-AATAAATAAAAAA
91829830 TGTGAAGACG
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
17 8 0.31
18 5 0.19
19 7 0.27
20 6 0.23
ACGTcount: A:0.77, C:0.02, G:0.08, T:0.13
Consensus pattern (18 bp):
AAAATAAATAAAAAAGAA
Found at i:91838755 original size:25 final size:25
Alignment explanation
Indices: 91838727--91838778 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
91838717 GATTTGAGTT
91838727 AGAAAAATATTTTTAAATTATTTTC
1 AGAAAAATATTTTTAAATTATTTTC
91838752 AGAAAAATATTTTTAAATTATTTTC
1 AGAAAAATATTTTTAAATTATTTTC
91838777 AG
1 AG
91838779 TGTTTATTCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.44, C:0.04, G:0.06, T:0.46
Consensus pattern (25 bp):
AGAAAAATATTTTTAAATTATTTTC
Found at i:91842656 original size:12 final size:12
Alignment explanation
Indices: 91842639--91842663 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
91842629 GACATCGTAG
91842639 CTAGGGTTTGTT
1 CTAGGGTTTGTT
91842651 CTAGGGTTTGTT
1 CTAGGGTTTGTT
91842663 C
1 C
91842664 AACATTTTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.12, G:0.32, T:0.48
Consensus pattern (12 bp):
CTAGGGTTTGTT
Found at i:91843277 original size:14 final size:14
Alignment explanation
Indices: 91843258--91843284 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
91843248 CTATGTTTAT
91843258 TATGTGTGAAATTA
1 TATGTGTGAAATTA
91843272 TATGTGTGAAATT
1 TATGTGTGAAATT
91843285 TTTGTGCTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TATGTGTGAAATTA
Found at i:91844525 original size:45 final size:44
Alignment explanation
Indices: 91844389--91844582 Score: 179
Period size: 41 Copynumber: 4.5 Consensus size: 44
91844379 TATGTGTTAC
* * * *
91844389 GTCTGGGACATTGGCATTGATATATGTGGTTACGTGTAGGACCAT
1 GTCTGGGACATCGGCA-TCATATATGTGATTACGTGTAAGACCAT
*
91844434 GTCTGGGACATCGGCATCATAT-T-TGATT-CGTGTAAGACCAC
1 GTCTGGGACATCGGCATCATATATGTGATTACGTGTAAGACCAT
* * * * *
91844475 ATCTGGGATATTGGCATCGATATATGTGCTTACGTGTAAGACTAT
1 GTCTGGGACATCGGCATC-ATATATGTGATTACGTGTAAGACCAT
* * *
91844520 GTCTGGGACATCGGCATCATAT-T-TGATT-CATCTAAGACCCT
1 GTCTGGGACATCGGCATCATATATGTGATTACGTGTAAGACCAT
91844561 GT-TGGGACAGT-GGCATCGATAT
1 GTCTGGGACA-TCGGCATC-ATAT
91844583 GAGACAGCAT
Statistics
Matches: 124, Mismatches: 19, Indels: 16
0.78 0.12 0.10
Matches are distributed among these distances:
40 13 0.10
41 42 0.34
42 12 0.10
43 3 0.02
44 13 0.10
45 41 0.33
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (44 bp):
GTCTGGGACATCGGCATCATATATGTGATTACGTGTAAGACCAT
Found at i:91844535 original size:86 final size:86
Alignment explanation
Indices: 91844390--91844582 Score: 282
Period size: 86 Copynumber: 2.3 Consensus size: 86
91844380 ATGTGTTACG
* * *
91844390 TCTGGGACATTGGCATTGATATATGTGGTTACGTGTAGGACCATGTCTGGGACATCGGCATCATA
1 TCTGGGACATTGGCATCGATATATGTGCTTACGTGTAAGACCATGTCTGGGACATCGGCATCATA
* *
91844455 TTTGATTCGTGTAAGACCACA
66 TTTGATTCATCTAAGACCACA
* *
91844476 TCTGGGATATTGGCATCGATATATGTGCTTACGTGTAAGACTATGTCTGGGACATCGGCATCATA
1 TCTGGGACATTGGCATCGATATATGTGCTTACGTGTAAGACCATGTCTGGGACATCGGCATCATA
91844541 TTTGATTCATCTAAGACC-C-
66 TTTGATTCATCTAAGACCACA
* *
91844560 TGTTGGGACAGTGGCATCGATAT
1 T-CTGGGACATTGGCATCGATAT
91844583 GAGACAGCAT
Statistics
Matches: 96, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
84 1 0.01
85 19 0.20
86 76 0.79
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (86 bp):
TCTGGGACATTGGCATCGATATATGTGCTTACGTGTAAGACCATGTCTGGGACATCGGCATCATA
TTTGATTCATCTAAGACCACA
Found at i:91850870 original size:49 final size:49
Alignment explanation
Indices: 91850817--91850913 Score: 185
Period size: 49 Copynumber: 2.0 Consensus size: 49
91850807 GCTTGTGCTG
*
91850817 AATTTGTGATTATGTTGTAAACCTTGATAAAACTATTTGAGTTGCTTAT
1 AATTTGTGATTATGTTGTAAACCTTGATAAAACTATTTGAGCTGCTTAT
91850866 AATTTGTGATTATGTTGTAAACCTTGATAAAACTATTTGAGCTGCTTA
1 AATTTGTGATTATGTTGTAAACCTTGATAAAACTATTTGAGCTGCTTA
91850914 GAAGCTATCG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.31, C:0.09, G:0.16, T:0.43
Consensus pattern (49 bp):
AATTTGTGATTATGTTGTAAACCTTGATAAAACTATTTGAGCTGCTTAT
Found at i:91851227 original size:47 final size:47
Alignment explanation
Indices: 91851176--91851273 Score: 160
Period size: 47 Copynumber: 2.1 Consensus size: 47
91851166 AATTATGTGG
* * *
91851176 TAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATATATGAGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAAAATGTATAAATGAGA
*
91851223 TAAGGCCGAATGGCCAATGTGATGAATGTGAAAATGTATAAATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAAAATGTATAAATGAGA
91851270 TAAG
1 TAAG
91851274 TCCCGAAGGG
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.37, C:0.08, G:0.30, T:0.26
Consensus pattern (47 bp):
TAAGGCCGAATGGCCAATGTGATGAATGTGAAAATGTATAAATGAGA
Found at i:91853274 original size:38 final size:38
Alignment explanation
Indices: 91853172--91853276 Score: 129
Period size: 38 Copynumber: 2.8 Consensus size: 38
91853162 AATCCGAGTT
* * * *
91853172 TAAAGACCCGCTGACTATATGTAGAGATTATGTCCGGG
1 TAAAGACCCACTGGCTATATATAGAGATTATGTCCGGA
* * *
91853210 TAAAGACCCAATGGCTATGTACAGAGATTATGTCCGGA
1 TAAAGACCCACTGGCTATATATAGAGATTATGTCCGGA
* *
91853248 TTAAGACCCACTGGCTTTATATAGAGATT
1 TAAAGACCCACTGGCTATATATAGAGATT
91853277 TCATCCGAGC
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
38 55 1.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (38 bp):
TAAAGACCCACTGGCTATATATAGAGATTATGTCCGGA
Found at i:91853378 original size:40 final size:40
Alignment explanation
Indices: 91853304--91853659 Score: 541
Period size: 40 Copynumber: 8.9 Consensus size: 40
91853294 CTCGACGATG
* *
91853304 ATCCGGGCTAAGTCTCGAAGGGCATTCGTGCCGGTGTTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
* * *
91853344 ATCCAGGATAAATCCCGAAGGGCATTCGTACCGGTGTTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
91853384 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
* *
91853424 ATTCGGGCTAAATCTCGAAGGGCATTCGTGCCGGTGTTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
* * *
91853464 ATCCAGGATAAATCCCGAAGGGCATTCGTACCGGTGTTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
*
91853504 ATCCGGGCTAAATCCCGAAGGGCATTTGTGCCGGTGTTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
*
91853544 ATCCGGGCTAAATCCCGAAGGGAATTCGTGCCGGTGTTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
** * *
91853584 ATCCGGGCTAAATCTAGAAGGGTATTCGTGCCGATGTTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
* * *
91853624 ATCCAGGCTAAGTCCCGAAGGGTATTCGTGCCGGTG
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTG
91853660 ATGTGTATTC
Statistics
Matches: 286, Mismatches: 30, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 286 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
Found at i:91857045 original size:51 final size:51
Alignment explanation
Indices: 91856986--91857088 Score: 197
Period size: 51 Copynumber: 2.0 Consensus size: 51
91856976 ACAAAAAGGG
91856986 GGCACAAATTTCGGATAAGGGAAAGACAAAGTAGCTGAATAGTCGATTCGT
1 GGCACAAATTTCGGATAAGGGAAAGACAAAGTAGCTGAATAGTCGATTCGT
*
91857037 GGCACAAATTTCGGATAAGGGAAAGAGAAAGTAGCTGAATAGTCGATTCGT
1 GGCACAAATTTCGGATAAGGGAAAGACAAAGTAGCTGAATAGTCGATTCGT
91857088 G
1 G
91857089 ATAATTCGAT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.37, C:0.13, G:0.29, T:0.21
Consensus pattern (51 bp):
GGCACAAATTTCGGATAAGGGAAAGACAAAGTAGCTGAATAGTCGATTCGT
Found at i:91858170 original size:47 final size:47
Alignment explanation
Indices: 91858119--91858223 Score: 174
Period size: 47 Copynumber: 2.2 Consensus size: 47
91858109 TAGTATTAAT
* * *
91858119 TATGTGGTAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAATGTATA
91858166 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAATGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAATGTATA
*
91858213 AATGTGATAAG
1 TATGTGATAAG
91858224 TCCCGAAGGG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 54 1.00
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAATGTATA
Found at i:91864184 original size:40 final size:40
Alignment explanation
Indices: 91864079--91864224 Score: 181
Period size: 40 Copynumber: 3.6 Consensus size: 40
91864069 GCTACTCGTT
*
91864079 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
91864119 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
91864159 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
91864200 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
91864225 CATCATTCAA
Statistics
Matches: 93, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
39 3 0.03
40 77 0.83
41 13 0.14
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:91868452 original size:11 final size:11
Alignment explanation
Indices: 91868436--91868460 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
91868426 GAGATCTTGT
91868436 ACTACTATATA
1 ACTACTATATA
91868447 ACTACTATATA
1 ACTACTATATA
91868458 ACT
1 ACT
91868461 TGAGACTCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.20, G:0.00, T:0.36
Consensus pattern (11 bp):
ACTACTATATA
Found at i:91875036 original size:15 final size:15
Alignment explanation
Indices: 91875004--91875032 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
91874994 ATTTTCTATG
91875004 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
91875019 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
91875033 ATTTTCACGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:91876665 original size:46 final size:46
Alignment explanation
Indices: 91876615--91876790 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 46
91876605 TGGTTGAGCA
*
91876615 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
91876661 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * * *
91876706 CATCTGAACTCATTGAATTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
91876754 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
91876791 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 18, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.59
47 25 0.24
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:91876771 original size:93 final size:93
Alignment explanation
Indices: 91876612--91876782 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
91876602 GGATGGTTGA
* * * * *
91876612 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAATTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
91876677 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * *
91876705 GCATCTGAACTCATTGAATTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCATTGAATTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
91876770 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
91876783 ACTTATGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAATTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:91877655 original size:62 final size:61
Alignment explanation
Indices: 91877558--91877674 Score: 225
Period size: 62 Copynumber: 1.9 Consensus size: 61
91877548 CTATTTTCAT
91877558 ATGGATTGAACAAAACAGGAATATAAATTATATTTTATGAGATATTTAAACTTTTGTGAAA
1 ATGGATTGAACAAAACAGGAATATAAATTATATTTTATGAGATATTTAAACTTTTGTGAAA
91877619 NATGGATTGAACAAAACAGGAATATAAATTATATTTTATGAGATATTTAAACTTTT
1 -ATGGATTGAACAAAACAGGAATATAAATTATATTTTATGAGATATTTAAACTTTT
91877675 CCGAAACAGG
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 55 1.00
ACGTcount: A:0.44, C:0.05, G:0.14, T:0.37
Consensus pattern (61 bp):
ATGGATTGAACAAAACAGGAATATAAATTATATTTTATGAGATATTTAAACTTTTGTGAAA
Found at i:91880207 original size:6 final size:6
Alignment explanation
Indices: 91880196--91880226 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
91880186 ATTCGGCAAT
91880196 TGTATA TGTATA TGTATA TGTATA TGTATA T
1 TGTATA TGTATA TGTATA TGTATA TGTATA T
91880227 TAATTCATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.52
Consensus pattern (6 bp):
TGTATA
Found at i:91881411 original size:43 final size:43
Alignment explanation
Indices: 91881361--91881442 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 43
91881351 GAGATATGTG
* *
91881361 GCATCCGAACTCATTGAGAGGTCCT-AGTTCATTATGGATACGA
1 GCATCCGAACTCATTCAGAGGT-CTGAGTTCATAATGGATACGA
* **
91881404 GCATCCGAGCTTGTTCAGAGGTCTGAGTTCATAATGGAT
1 GCATCCGAACTCATTCAGAGGTCTGAGTTCATAATGGAT
91881443 GCGATTCATG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
42 2 0.06
43 31 0.94
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.29
Consensus pattern (43 bp):
GCATCCGAACTCATTCAGAGGTCTGAGTTCATAATGGATACGA
Found at i:91885469 original size:16 final size:15
Alignment explanation
Indices: 91885443--91885472 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
91885433 ACTAGATCGG
91885443 CAAAAGCCGAAAAGC
1 CAAAAGCCGAAAAGC
91885458 CAAAATGCCGAAAAG
1 CAAAA-GCCGAAAAG
91885473 TTGATATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.53, C:0.23, G:0.20, T:0.03
Consensus pattern (15 bp):
CAAAAGCCGAAAAGC
Found at i:91885982 original size:28 final size:26
Alignment explanation
Indices: 91885891--91886001 Score: 132
Period size: 27 Copynumber: 4.1 Consensus size: 26
91885881 GGAAGCGTCT
* * *
91885891 TGGTGGCTATGCCACAATTATCTGATC
1 TGGTGGCTCTGTCAC-ATTATCTGTTC
* *
91885918 TAGTGGCTCTGCCACATATATCTGTTC
1 TGGTGGCTCTGTCACAT-TATCTGTTC
91885945 TGGTGGCTCTGTCACGATTATCTGTATC
1 TGGTGGCTCTGTCAC-ATTATCTGT-TC
*
91885973 TGGTGACTCTGTCACATTATCTGTTC
1 TGGTGGCTCTGTCACATTATCTGTTC
91885999 TGG
1 TGG
91886002 CAACCATGCT
Statistics
Matches: 75, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 7 0.09
27 50 0.67
28 18 0.24
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.38
Consensus pattern (26 bp):
TGGTGGCTCTGTCACATTATCTGTTC
Found at i:91885994 original size:54 final size:54
Alignment explanation
Indices: 91885891--91886001 Score: 152
Period size: 54 Copynumber: 2.1 Consensus size: 54
91885881 GGAAGCGTCT
*
91885891 TGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCTGTTC
1 TGGTGGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACATATATCTGTTC
* * * * *
91885945 TGGTGGCTCTGTCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTTC
1 TGGTGGCTATGCCACAATTATCTG-ATCTAGTGACTCTGCCACATATATCTGTTC
91885999 TGG
1 TGG
91886002 CAACCATGCT
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.66
55 17 0.34
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.38
Consensus pattern (54 bp):
TGGTGGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACATATATCTGTTC
Found at i:91886085 original size:39 final size:39
Alignment explanation
Indices: 91886031--91886110 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
91886021 TGTCGCGTGT
*
91886031 AGCGGTTGGGTGGGTCGAGTAGTCTCCCCATATGGTGAA
1 AGCGGTTGGGTGGGTCGAGTAGTCTCCCCACATGGTGAA
91886070 AGCGGTTGGGTGGGTCGAGTAGTCTCCCCACATGGTGAA
1 AGCGGTTGGGTGGGTCGAGTAGTCTCCCCACATGGTGAA
91886109 AG
1 AG
91886111 GTTGGTATGG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.19, C:0.19, G:0.39, T:0.24
Consensus pattern (39 bp):
AGCGGTTGGGTGGGTCGAGTAGTCTCCCCACATGGTGAA
Found at i:91893600 original size:42 final size:43
Alignment explanation
Indices: 91893529--91893644 Score: 121
Period size: 43 Copynumber: 2.7 Consensus size: 43
91893519 GGATCTAAAA
* * *
91893529 CATCTGAACTCGTTGAGAGGT-CTGGGTTCATGA-G-ATACGTGG
1 CATCCGAACTCGTTGAGAGGTCCT-AGTTCATGATGAATACG-CG
*
91893571 CATCCGAACTCGTTGAGAGGTCCTAGTTCATTATGAATACGCG
1 CATCCGAACTCGTTGAGAGGTCCTAGTTCATGATGAATACGCG
* * * *
91893614 CATCCGAGCTTGTTGAGAGCTCCGAGTTCAT
1 CATCCGAACTCGTTGAGAGGTCCTAGTTCAT
91893645 AATGGATGTG
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
42 27 0.43
43 31 0.49
44 5 0.08
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (43 bp):
CATCCGAACTCGTTGAGAGGTCCTAGTTCATGATGAATACGCG
Found at i:91900654 original size:53 final size:53
Alignment explanation
Indices: 91900480--91900683 Score: 162
Period size: 53 Copynumber: 3.8 Consensus size: 53
91900470 AGGGTTTAAG
* * * * * *
91900480 GATACCAAGTAAGACCATGCGAA-AGCATGGCATTGGTAAGTTTTACAAGGCAAG
1 GATACCACGTAAGACCATGCCAAGA-CATGGCAATGGTAAG-TTCATAAGGCAAA
* * * * * * *
91900534 GAAATCATGTAAGACCATGTCAAGACATGGC-ATCGATAAACTACGATAAGGCAAA
1 GATACCACGTAAGACCATGCCAAGACATGGCAAT-GGT-AAGTTC-ATAAGGCAAA
* * * * *
91900589 GATCCCATGTAAGACCATGCCAAGGA-ATGTCAATGGTGAGTTCATAAGGCAAG
1 GATACCACGTAAGACCATGCCAA-GACATGGCAATGGTAAGTTCATAAGGCAAA
*
91900642 GATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 GATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
91900684 TACAAAGGAA
Statistics
Matches: 116, Mismatches: 27, Indels: 15
0.73 0.17 0.09
Matches are distributed among these distances:
52 2 0.02
53 44 0.38
54 30 0.26
55 36 0.31
56 4 0.03
ACGTcount: A:0.38, C:0.18, G:0.24, T:0.20
Consensus pattern (53 bp):
GATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAA
Found at i:91902280 original size:619 final size:620
Alignment explanation
Indices: 91901090--91902318 Score: 1807
Period size: 619 Copynumber: 2.0 Consensus size: 620
91901080 CTGGACGATG
* *
91901090 GAAATGTGCAAGTGTACGCAATCGCAACAAGTAATAAAGTGACAAGTAAATGTCGAGTTATCGTA
1 GAAATGTGCAAGTGTACACAATCGCAACAAGTAATAAAGTGACAAGTAAATGTCGAGTTATCATA
* *
91901155 CCCATAGGGACTGTGAAAAGAATTACTTATGAATGCTATTTAAAACACTTTGGTGAAGAAAAATA
66 CCCACAGAGACTGTGAAAAGAATTACTTATGAATGCTATTTAAAACACTTTGGTGAAG-AAAATA
* * * * *
91901220 TTTTGTTTCAAGAGGTGATTAAAAACTAAGATTTTAAACTAAGTAAACTAAATAAATAAATCTCC
130 TTTTGTTTCAAGAGGTGACTAAAAACTAAGACTTTAAACAAAGTAAACTAAATAAAGAAATCTCA
*
91901285 AATGCACAATTTCAAAATACGATCTTAATCAAGATGACATAATTGTGTTAGATTAATTACATTTC
195 AATGCACAATTTCAAAATACGATCTTAATCAAGATGACATAATTGTGTCAGATTAATTACATTTC
* * *
91901350 TTAACTTAGAATTATTAAACTCATGTTTATGTTATTACGAATAAATTCACAACAAATCGGTAATT
260 ATAACATAGAATTATTAAACTCATGTTTATATTATTACGAATAAATTCACAACAAATCGGTAATT
91901415 TGCTAACTTATGAACATACTCACCTACCAAAATCCATTCATCTCTTGACTATATCCTTATGTCAA
325 TGCTAACTTATGAACATACTCACCTACCAAAATCCATTCATCTCTTGACTATATCCTTATGTCAA
* * *
91901480 TTCAACCGATTAAGCAAATCTTAATAGGAAAATATGTTATTGCACATATACTTATTAAATCGAAA
390 TTCAACCGATTAAACAAATATTAATAGGAAAATATGTTATAGCACATATACTTATTAAATCGAAA
** ** *
91901545 TAATCTCTTGTACATATTCCTATGTCAATTCAAATGATTACTTAAATCTAATAAGCACATAAAAG
455 TAATCTCTTAAACATATTCCTATGTCAATTCAAACAATTACTTAAATCTAATAAGAACATAAAAG
* * * *
91901610 ATTATGTGAGGTAACAAAGTATCCCTAGCTTGAAACAGTTTAATTACAATAATCTTGCAAGCTAT
520 ACTATGTGAGGTAACAAAGTATCCCTACCTTGAAACAATTTAATCACAATAATCTTGCAAGCTAT
*
91901675 GGAAGGCAAATGTATCGTCAGATACATAGAACAACA
585 GCAAGGCAAATGTATCGTCAGATACATAGAACAACA
91901711 GAAATGTGCAAGTGTACACAATCGCAACAAGTAATAAAGTGACAAGTAAATGTCGAGTTATCATA
1 GAAATGTGCAAGTGTACACAATCGCAACAAGTAATAAAGTGACAAGTAAATGTCGAGTTATCATA
* * *
91901776 CCTACAGAGATTGTGAAAAG-ATCTATTTATGAATGCTATTTAAAACACTTTGGTGAAG-AAAT-
66 CCCACAGAGACTGTGAAAAGAAT-TACTTATGAATGCTATTTAAAACACTTTGGTGAAGAAAATA
* *
91901838 TTTTTTTTGAAGAAGGTGACTAAAAACTCAA-ACTTTAAACAAAGTAAACTAAATAAAGAAATCT
130 TTTTGTTTCAAG-AGGTGACTAAAAACT-AAGACTTTAAACAAAGTAAACTAAATAAAGAAATCT
**
91901902 CAAATGCATGATTTCAAAATACGA-CTTTAATCAAGATGACATAATTGTG-CAGATTAATTACAT
193 CAAATGCACAATTTCAAAATACGATC-TTAATCAAGATGACATAATTGTGTCAGATTAATTACAT
** * * ** * *
91901965 TTCATCGCATA-AATTATTAAACTCATGTTTATATTCTTATGAATAAATTCACTGCAACTTGGTA
257 TTCATAACATAGAATTATTAAACTCATGTTTATATTATTACGAATAAATTCACAACAAATCGGTA
91902029 ATTTGCTAACTTATGAACATACTCACCTACCAAAATCCATTCATCTCTTGGAC-ATAT-CTCTAT
322 ATTTGCTAACTTATGAACATACTCACCTACCAAAATCCATTCATCTCTT-GACTATATCCT-TAT
* *
91902092 TTCAATTCAA-TGAATTAAACAAATATTAATAGGAAAATATGTTATAGCACATACATACTTATTA
385 GTCAATTCAACCG-ATTAAACAAATATTAATAGGAAAATATGTTATAGCACAT--ATACTTATTA
* ** * *
91902156 AATTGAAATAATCTCTTAAACATA-TCCATATGTCAATTCAAACAATTAAC-TCGATTTTATAAG
447 AATCGAAATAATCTCTTAAACATATTCC-TATGTCAATTCAAACAATT-ACTTAAATCTAATAAG
*
91902219 AACATAAAAGACTATGTGAGGTAACAAAGTATCCTTACCTTGAAACAATTTAATCACAATAATCT
510 AACATAAAAGACTATGTGAGGTAACAAAGTATCCCTACCTTGAAACAATTTAATCACAATAATCT
* *
91902284 TGCAAGTTATGCAAGGCAATTGTATCGTCAGATAC
575 TGCAAGCTATGCAAGGCAAATGTATCGTCAGATAC
91902319 CGTTGCTAAT
Statistics
Matches: 546, Mismatches: 51, Indels: 24
0.88 0.08 0.04
Matches are distributed among these distances:
616 3 0.01
617 147 0.27
618 37 0.07
619 240 0.44
620 6 0.01
621 113 0.21
ACGTcount: A:0.40, C:0.15, G:0.13, T:0.32
Consensus pattern (620 bp):
GAAATGTGCAAGTGTACACAATCGCAACAAGTAATAAAGTGACAAGTAAATGTCGAGTTATCATA
CCCACAGAGACTGTGAAAAGAATTACTTATGAATGCTATTTAAAACACTTTGGTGAAGAAAATAT
TTTGTTTCAAGAGGTGACTAAAAACTAAGACTTTAAACAAAGTAAACTAAATAAAGAAATCTCAA
ATGCACAATTTCAAAATACGATCTTAATCAAGATGACATAATTGTGTCAGATTAATTACATTTCA
TAACATAGAATTATTAAACTCATGTTTATATTATTACGAATAAATTCACAACAAATCGGTAATTT
GCTAACTTATGAACATACTCACCTACCAAAATCCATTCATCTCTTGACTATATCCTTATGTCAAT
TCAACCGATTAAACAAATATTAATAGGAAAATATGTTATAGCACATATACTTATTAAATCGAAAT
AATCTCTTAAACATATTCCTATGTCAATTCAAACAATTACTTAAATCTAATAAGAACATAAAAGA
CTATGTGAGGTAACAAAGTATCCCTACCTTGAAACAATTTAATCACAATAATCTTGCAAGCTATG
CAAGGCAAATGTATCGTCAGATACATAGAACAACA
Found at i:91902696 original size:33 final size:33
Alignment explanation
Indices: 91902654--91902752 Score: 164
Period size: 33 Copynumber: 3.0 Consensus size: 33
91902644 AGAGATAGGG
*
91902654 AACAAGAATCAAATTTGGT-TCTTTTCCATGCTT
1 AACAAGAATCAAATTCGGTGT-TTTTCCATGCTT
*
91902687 AAGAAGAATCAAATTCGGTGTTTTTCCATGCTT
1 AACAAGAATCAAATTCGGTGTTTTTCCATGCTT
91902720 AACAAGAATCAAATTCGGTGTTTTTCCATGCTT
1 AACAAGAATCAAATTCGGTGTTTTTCCATGCTT
91902753 GACTAGCTTG
Statistics
Matches: 62, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
33 61 0.98
34 1 0.02
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.37
Consensus pattern (33 bp):
AACAAGAATCAAATTCGGTGTTTTTCCATGCTT
Found at i:91904146 original size:27 final size:27
Alignment explanation
Indices: 91904116--91904293 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
91904106 ATATTGAGTC
* * * *
91904116 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
91904143 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
91904170 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
91904198 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
91904225 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
91904252 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
91904279 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
91904294 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:91904255 original size:82 final size:81
Alignment explanation
Indices: 91904137--91904292 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
91904127 TGCTATATAA
* *
91904137 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
91904202 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
91904219 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
91904283 CACTTAGTGC
65 CACTTAGTGC
91904293 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:91910370 original size:48 final size:48
Alignment explanation
Indices: 91910307--91910412 Score: 176
Period size: 48 Copynumber: 2.2 Consensus size: 48
91910297 CGGCCACAAT
* *
91910307 ACATACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
1 ACATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
*
91910355 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
1 ACATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
*
91910403 ACATATATAT
1 ACATACATAT
91910413 ATTTATCTTG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 53 1.00
ACGTcount: A:0.33, C:0.28, G:0.06, T:0.33
Consensus pattern (48 bp):
ACATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
Found at i:91920075 original size:47 final size:47
Alignment explanation
Indices: 91919966--91920272 Score: 320
Period size: 47 Copynumber: 6.7 Consensus size: 47
91919956 CCGCCCATAA
* *
91919966 ACGAACTCGGACTCAACTCAACGAGCTC-GA-G-C--GTTCGCATCCATA
1 ACGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT-C-TC
* *
91920011 ATGAACTCGGACTCAACTCAGCGAGCTCGGATGCCTAGTTACATCTC
1 ACGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
* *
91920058 ACGAACTCGGACTCAACTCAACGAGCTC-GA-G-C--GTTCGCATCCATA
1 ACGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT-C-TC
* *
91920103 ATGAACTCGGACTCAACTCAGCGAGCTCGGATGCCTAGTTACATCTC
1 ACGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
* *
91920150 ACGAACTCGGACTCAACTCAACGAGCTC-GA-G-C--GTTCGCATCCATA
1 ACGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT-C-TC
* *
91920195 ATGAACTCGGACTCAACTCAGCGAGCTCGGATGCCTAGTTACATCTC
1 ACGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
91920242 ACGAACTCGGACTCAACTCAACGAGCTCGGA
1 ACGAACTCGGACTCAACTCAACGAGCTCGGA
91920273 ACTCAACCAT
Statistics
Matches: 219, Mismatches: 22, Indels: 40
0.78 0.08 0.14
Matches are distributed among these distances:
42 6 0.03
43 6 0.03
44 4 0.02
45 82 0.37
46 10 0.05
47 87 0.40
48 6 0.03
49 9 0.04
50 9 0.04
ACGTcount: A:0.28, C:0.32, G:0.21, T:0.20
Consensus pattern (47 bp):
ACGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
Found at i:91920123 original size:92 final size:92
Alignment explanation
Indices: 91919966--91920270 Score: 610
Period size: 92 Copynumber: 3.3 Consensus size: 92
91919956 CCGCCCATAA
91919966 ACGAACTCGGACTCAACTCAACGAGCTCGAGCGTTCGCATCCATAATGAACTCGGACTCAACTCA
1 ACGAACTCGGACTCAACTCAACGAGCTCGAGCGTTCGCATCCATAATGAACTCGGACTCAACTCA
91920031 GCGAGCTCGGATGCCTAGTTACATCTC
66 GCGAGCTCGGATGCCTAGTTACATCTC
91920058 ACGAACTCGGACTCAACTCAACGAGCTCGAGCGTTCGCATCCATAATGAACTCGGACTCAACTCA
1 ACGAACTCGGACTCAACTCAACGAGCTCGAGCGTTCGCATCCATAATGAACTCGGACTCAACTCA
91920123 GCGAGCTCGGATGCCTAGTTACATCTC
66 GCGAGCTCGGATGCCTAGTTACATCTC
91920150 ACGAACTCGGACTCAACTCAACGAGCTCGAGCGTTCGCATCCATAATGAACTCGGACTCAACTCA
1 ACGAACTCGGACTCAACTCAACGAGCTCGAGCGTTCGCATCCATAATGAACTCGGACTCAACTCA
91920215 GCGAGCTCGGATGCCTAGTTACATCTC
66 GCGAGCTCGGATGCCTAGTTACATCTC
91920242 ACGAACTCGGACTCAACTCAACGAGCTCG
1 ACGAACTCGGACTCAACTCAACGAGCTCG
91920271 GAACTCAACC
Statistics
Matches: 213, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
92 213 1.00
ACGTcount: A:0.28, C:0.32, G:0.21, T:0.20
Consensus pattern (92 bp):
ACGAACTCGGACTCAACTCAACGAGCTCGAGCGTTCGCATCCATAATGAACTCGGACTCAACTCA
GCGAGCTCGGATGCCTAGTTACATCTC
Found at i:91924964 original size:23 final size:23
Alignment explanation
Indices: 91924934--91925062 Score: 116
Period size: 23 Copynumber: 5.7 Consensus size: 23
91924924 CTGATGGATA
91924934 GTAAGCTCTAATGAGCTGAAACG
1 GTAAGCTCTAATGAGCTGAAACG
* * * *
91924957 GTAAGCTCTATTAAGCT-TAACA
1 GTAAGCTCTAATGAGCTGAAACG
* * *
91924979 GTAAGCTCTATTGAGCTGGATCG
1 GTAAGCTCTAATGAGCTGAAACG
* * * *
91925002 ATAAGCTCCAATGAGCTGAAGCA
1 GTAAGCTCTAATGAGCTGAAACG
* * *
91925025 GTAAGCTCTTACGAGCTGAATCG
1 GTAAGCTCTAATGAGCTGAAACG
*
91925048 GTAAGCTCCAATGAG
1 GTAAGCTCTAATGAG
91925063 TTGTGGTGAG
Statistics
Matches: 82, Mismatches: 23, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
22 19 0.23
23 63 0.77
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (23 bp):
GTAAGCTCTAATGAGCTGAAACG
Found at i:91924988 original size:45 final size:46
Alignment explanation
Indices: 91924933--91925059 Score: 157
Period size: 45 Copynumber: 2.8 Consensus size: 46
91924923 GCTGATGGAT
* * * *
91924933 AGTAAGCTCTAATGAGCTGAAACGGTAAGCTCTATTAAGCTTAA-C
1 AGTAAGCTCTAATGAGCTGAATCGGTAAGCTCCAATAAGCTGAAGC
* * * *
91924978 AGTAAGCTCTATTGAGCTGGATCGATAAGCTCCAATGAGCTGAAGC
1 AGTAAGCTCTAATGAGCTGAATCGGTAAGCTCCAATAAGCTGAAGC
* *
91925024 AGTAAGCTCTTACGAGCTGAATCGGTAAGCTCCAAT
1 AGTAAGCTCTAATGAGCTGAATCGGTAAGCTCCAAT
91925060 GAGTTGTGGT
Statistics
Matches: 68, Mismatches: 13, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
45 36 0.53
46 32 0.47
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (46 bp):
AGTAAGCTCTAATGAGCTGAATCGGTAAGCTCCAATAAGCTGAAGC
Found at i:91933483 original size:31 final size:31
Alignment explanation
Indices: 91933442--91933503 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
91933432 TCGGGATTTA
91933442 AGCTTCCCAGGAAATAACTTCAACCTTGAAT
1 AGCTTCCCAGGAAATAACTTCAACCTTGAAT
*
91933473 AGCTTTCCAGGAAATAACTTCAACCTTGAAT
1 AGCTTCCCAGGAAATAACTTCAACCTTGAAT
91933504 TAAACAACAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.35, C:0.24, G:0.13, T:0.27
Consensus pattern (31 bp):
AGCTTCCCAGGAAATAACTTCAACCTTGAAT
Found at i:91938086 original size:39 final size:40
Alignment explanation
Indices: 91937876--91938098 Score: 227
Period size: 40 Copynumber: 5.6 Consensus size: 40
91937866 TTGAATGCTG
* * * * * *
91937876 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
* * * *
91937916 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
**
91937956 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* **
91937996 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
91938036 TCCGGGTTATGTCCCGAAGGCATT-GTGTGGGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
91938075 TCCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
91938099 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
39 34 0.21
40 117 0.74
41 8 0.05
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:91938118 original size:79 final size:80
Alignment explanation
Indices: 91937951--91938133 Score: 208
Period size: 79 Copynumber: 2.3 Consensus size: 80
91937941 GTGCGAGATA
** *
91937951 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
** **
91938016 CATTCGTGCGAATTG
66 CATTCGAACGAAGAG
* * * * *
91938031 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGGGTTACTAAATCCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
* *
91938095 CATTTGAACGAGGAG
66 CATTCGAACGAAGAG
* *
91938110 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
91938134 TACGTGATTT
Statistics
Matches: 85, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
78 14 0.16
79 44 0.52
80 27 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
CATTCGAACGAAGAG
Found at i:91946436 original size:56 final size:56
Alignment explanation
Indices: 91946379--91946642 Score: 343
Period size: 56 Copynumber: 4.7 Consensus size: 56
91946369 CATACAGGGT
* * * * *
91946379 CTTACTCGTACACATATATCGGAATCACATATCGATGCCAACGTATTAAATGTGGT
1 CTTACTCGCACACATATATCAGAGTCACATATCGATGCCAACGTATTAAACGTGGA
* *
91946435 CTTACTCGCACACATATATCAGAGTCACATATCGTTGCCAATGT-TTGAAACGTGGA
1 CTTACTCGCACACATATATCAGAGTCACATATCGATGCCAACGTATT-AAACGTGGA
** * * *
91946491 CTTACTCGCACACATATATTGGAATCATATATCGATGTCAACGTATTAAATC-TGGA
1 CTTACTCGCACACATATATCAGAGTCACATATCGATGCCAACGTATTAAA-CGTGGA
* * * *
91946547 CTTACTCGCACACTTATATCAGAGTCATATATCGATGCCAATGTATGAAACGTGGA
1 CTTACTCGCACACATATATCAGAGTCACATATCGATGCCAACGTATTAAACGTGGA
*
91946603 CTTACTCGCACATATATATCAGAGTCACATATCGATGCCA
1 CTTACTCGCACACATATATCAGAGTCACATATCGATGCCA
91946643 TATATACATC
Statistics
Matches: 180, Mismatches: 24, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
55 3 0.02
56 174 0.97
57 3 0.02
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (56 bp):
CTTACTCGCACACATATATCAGAGTCACATATCGATGCCAACGTATTAAACGTGGA
Found at i:91946551 original size:112 final size:112
Alignment explanation
Indices: 91946379--91946642 Score: 411
Period size: 112 Copynumber: 2.4 Consensus size: 112
91946369 CATACAGGGT
* * *
91946379 CTTACTCGTACACATATATCGGAATCACATATCGATGCCAACGTATTAAATGTGGTCTTACTCGC
1 CTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATTAAATCTGGACTTACTCGC
* *
91946444 ACACATATATCAGAGTCACATATCGTTGCCAATGTTTGAAACGTGGA
66 ACACATATATCAGAGTCACATATCGATGCCAATGTATGAAACGTGGA
* * *
91946491 CTTACTCGCACACATATATTGGAATCATATATCGATGTCAACGTATTAAATCTGGACTTACTCGC
1 CTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATTAAATCTGGACTTACTCGC
* *
91946556 ACACTTATATCAGAGTCATATATCGATGCCAATGTATGAAACGTGGA
66 ACACATATATCAGAGTCACATATCGATGCCAATGTATGAAACGTGGA
* * *
91946603 CTTACTCGCACATATATATCAGAGTCACATATCGATGCCA
1 CTTACTCGCACACATATATCGGAATCACATATCGATGCCA
91946643 TATATACATC
Statistics
Matches: 136, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
112 136 1.00
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (112 bp):
CTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATTAAATCTGGACTTACTCGC
ACACATATATCAGAGTCACATATCGATGCCAATGTATGAAACGTGGA
Found at i:91957157 original size:24 final size:24
Alignment explanation
Indices: 91957091--91957160 Score: 104
Period size: 24 Copynumber: 2.9 Consensus size: 24
91957081 TACCGAAATA
*
91957091 CCGAAATGCCGAAAAGCCGAAAAG
1 CCGAAATGCCGAAAAGCTGAAAAG
*
91957115 CCGAAAAGCCGAAAAGCTGAAAAG
1 CCGAAATGCCGAAAAGCTGAAAAG
* *
91957139 CTGAAATGCCGAAATGCTGAAA
1 CCGAAATGCCGAAAAGCTGAAA
91957161 GTTGGGCTAT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.46, C:0.21, G:0.24, T:0.09
Consensus pattern (24 bp):
CCGAAATGCCGAAAAGCTGAAAAG
Found at i:91957160 original size:8 final size:8
Alignment explanation
Indices: 91957070--91957152 Score: 89
Period size: 8 Copynumber: 10.4 Consensus size: 8
91957060 ATGAATTGGC
*
91957070 AAAAGCTG
1 AAAAGCCG
91957078 AAATA-CCG
1 AAA-AGCCG
91957086 AAATA-CCG
1 AAA-AGCCG
*
91957094 AAATGCCG
1 AAAAGCCG
91957102 AAAAGCCG
1 AAAAGCCG
91957110 AAAAGCCG
1 AAAAGCCG
91957118 AAAAGCCG
1 AAAAGCCG
*
91957126 AAAAGCTG
1 AAAAGCCG
*
91957134 AAAAGCTG
1 AAAAGCCG
*
91957142 AAATGCCG
1 AAAAGCCG
91957150 AAA
1 AAA
91957153 TGCTGAAAGT
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
8 66 0.99
9 1 0.01
ACGTcount: A:0.49, C:0.20, G:0.22, T:0.08
Consensus pattern (8 bp):
AAAAGCCG
Found at i:91957282 original size:10 final size:9
Alignment explanation
Indices: 91957263--91957302 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
91957253 GTTGAGAATT
91957263 GGCCAAATG
1 GGCCAAATG
91957272 GGCCAAAATG
1 GGCC-AAATG
*
91957282 GGCTAAATG
1 GGCCAAATG
*
91957291 GGCCTAATG
1 GGCCAAATG
91957300 GGC
1 GGC
91957303 TATTGGGCCC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
9 19 0.70
10 8 0.30
ACGTcount: A:0.30, C:0.20, G:0.35, T:0.15
Consensus pattern (9 bp):
GGCCAAATG
Found at i:91957426 original size:29 final size:29
Alignment explanation
Indices: 91957384--91957553 Score: 225
Period size: 29 Copynumber: 5.9 Consensus size: 29
91957374 ATAATATGAT
91957384 TTGGGCCTAATGGGCCATATGAATGTGAA
1 TTGGGCCTAATGGGCCATATGAATGTGAA
* * * *
91957413 TTGGGCCTAGTGGGCCATAAGAATATGAT
1 TTGGGCCTAATGGGCCATATGAATGTGAA
91957442 TTGGGCCTAATGGGCCATATGAATGTGAA
1 TTGGGCCTAATGGGCCATATGAATGTGAA
* * * *
91957471 TTGGGCCTAGTGGGCCATAAGAATATGAT
1 TTGGGCCTAATGGGCCATATGAATGTGAA
*
91957500 TTGGGCCTAATGGGCCATATGAATGAG-A
1 TTGGGCCTAATGGGCCATATGAATGTGAA
* * *
91957528 TTGGGCCCAGTGGGCCATATGCATGT
1 TTGGGCCTAATGGGCCATATGAATGT
91957554 ATGTACGGGT
Statistics
Matches: 120, Mismatches: 21, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
28 22 0.18
29 98 0.82
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.27
Consensus pattern (29 bp):
TTGGGCCTAATGGGCCATATGAATGTGAA
Found at i:91957466 original size:58 final size:58
Alignment explanation
Indices: 91957376--91957546 Score: 317
Period size: 58 Copynumber: 3.0 Consensus size: 58
91957366 GCATGAGTAT
91957376 AATATGATTTGGGCCTAATGGGCCATATGAATGTGAATTGGGCCTAGTGGGCCATAAG
1 AATATGATTTGGGCCTAATGGGCCATATGAATGTGAATTGGGCCTAGTGGGCCATAAG
91957434 AATATGATTTGGGCCTAATGGGCCATATGAATGTGAATTGGGCCTAGTGGGCCATAAG
1 AATATGATTTGGGCCTAATGGGCCATATGAATGTGAATTGGGCCTAGTGGGCCATAAG
* *
91957492 AATATGATTTGGGCCTAATGGGCCATATGAATGAG-ATTGGGCCCAGTGGGCCATA
1 AATATGATTTGGGCCTAATGGGCCATATGAATGTGAATTGGGCCTAGTGGGCCATA
91957547 TGCATGTATG
Statistics
Matches: 111, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
57 19 0.17
58 92 0.83
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (58 bp):
AATATGATTTGGGCCTAATGGGCCATATGAATGTGAATTGGGCCTAGTGGGCCATAAG
Found at i:91961533 original size:26 final size:25
Alignment explanation
Indices: 91961504--91961584 Score: 99
Period size: 26 Copynumber: 3.1 Consensus size: 25
91961494 CTGATTTGTA
*
91961504 AAATTACAAAAATACCCTTGTAGGGT
1 AAATTACTAAAATACCC-TGTAGGGT
* *
91961530 AAATTGCTAAAATACCCCTATAGGGT
1 AAATTACTAAAATA-CCCTGTAGGGT
*
91961556 AAATTACTGAAATACTCCTGTAGGGT
1 AAATTACTAAAATAC-CCTGTAGGGT
91961582 AAA
1 AAA
91961585 ATGGCATTTT
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.02
26 43 0.91
27 3 0.06
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27
Consensus pattern (25 bp):
AAATTACTAAAATACCCTGTAGGGT
Found at i:91961866 original size:25 final size:25
Alignment explanation
Indices: 91961838--91961972 Score: 144
Period size: 25 Copynumber: 5.4 Consensus size: 25
91961828 TTCTGATTAT
*
91961838 GGCTTTGTCCCGATATGCTATTGAA
1 GGCTTTGTGCCGATATGCTATTGAA
91961863 GGCTTTGTGCCGATATGCTATTGAA
1 GGCTTTGTGCCGATATGCTATTGAA
* * * * *
91961888 GGCTTCGTGCTGGTATGTTATTGAT
1 GGCTTTGTGCCGATATGCTATTGAA
* *
91961913 GGCTTTGTGCCGATATGATATTGAT
1 GGCTTTGTGCCGATATGCTATTGAA
* * * * * *
91961938 GGCTATGTGCCAATCTGTTATCGAT
1 GGCTTTGTGCCGATATGCTATTGAA
91961963 GGCTTTGTGC
1 GGCTTTGTGC
91961973 TAATCGTATT
Statistics
Matches: 94, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 94 1.00
ACGTcount: A:0.17, C:0.16, G:0.28, T:0.39
Consensus pattern (25 bp):
GGCTTTGTGCCGATATGCTATTGAA
Found at i:91961977 original size:25 final size:25
Alignment explanation
Indices: 91961903--91961986 Score: 87
Period size: 25 Copynumber: 3.3 Consensus size: 25
91961893 CGTGCTGGTA
* * *
91961903 TGTTATTGATGGCTTTGTGCCGATA
1 TGTTATCGATGGCTTTGTGCCAATC
* * *
91961928 TGATATTGATGGCTATGTGCCAATC
1 TGTTATCGATGGCTTTGTGCCAATC
*
91961953 TGTTATCGATGGCTTTGTGCTAATC
1 TGTTATCGATGGCTTTGTGCCAATC
*
91961978 GTATTATCG
1 -TGTTATCG
91961987 TAATAATGGC
Statistics
Matches: 49, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
25 42 0.86
26 7 0.14
ACGTcount: A:0.19, C:0.14, G:0.25, T:0.42
Consensus pattern (25 bp):
TGTTATCGATGGCTTTGTGCCAATC
Found at i:91974165 original size:30 final size:30
Alignment explanation
Indices: 91974108--91974165 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
91974098 TTTTCGGGCT
* **
91974108 TAGGGGTAAAATGGTCATTTTGTCAAAGTC
1 TAGGGGCAAAATGGTCATTTTACCAAAGTC
**
91974138 TAGGGGCAAAATGGTTGTTTTACCAAAG
1 TAGGGGCAAAATGGTCATTTTACCAAAG
91974166 ATATAAATTT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.31, C:0.10, G:0.28, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTC
Found at i:91975144 original size:74 final size:74
Alignment explanation
Indices: 91975023--91975172 Score: 291
Period size: 74 Copynumber: 2.0 Consensus size: 74
91975013 TAGATGATGT
91975023 AGCCACTCCGAATCCCTCACAGCTCCAAGCCCACTATGGTTGGGGATTTCCTGCAGAGATGAAAA
1 AGCCACTCCGAATCCCTCACAGCTCCAAGCCCACTATGGTTGGGGATTTCCTGCAGAGATGAAAA
91975088 CAAAAGGTG
66 CAAAAGGTG
91975097 AGCCACTCCGAATCCCTCACAGCTCCAAGCCCACTATGGTTGGGGATTTCCTGCAGAGATGAAAA
1 AGCCACTCCGAATCCCTCACAGCTCCAAGCCCACTATGGTTGGGGATTTCCTGCAGAGATGAAAA
*
91975162 CAAAGGGTG
66 CAAAAGGTG
91975171 AG
1 AG
91975173 TTCAGTAAAC
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
74 75 1.00
ACGTcount: A:0.29, C:0.28, G:0.24, T:0.19
Consensus pattern (74 bp):
AGCCACTCCGAATCCCTCACAGCTCCAAGCCCACTATGGTTGGGGATTTCCTGCAGAGATGAAAA
CAAAAGGTG
Found at i:91981480 original size:60 final size:60
Alignment explanation
Indices: 91981407--91981635 Score: 449
Period size: 60 Copynumber: 3.8 Consensus size: 60
91981397 GCCACATTCA
*
91981407 GAGCTACAACAGATACGCCTCAAAATATCTCTGCTCCATTGGCCCGGTGGCCATAGAGCG
1 GAGCTACACCAGATACGCCTCAAAATATCTCTGCTCCATTGGCCCGGTGGCCATAGAGCG
91981467 GAGCTACACCAGATACGCCTCAAAATATCTCTGCTCCATTGGCCCGGTGGCCATAGAGCG
1 GAGCTACACCAGATACGCCTCAAAATATCTCTGCTCCATTGGCCCGGTGGCCATAGAGCG
91981527 GAGCTACACCAGATACGCCTCAAAATATCTCTGCTCCATTGGCCCGGTGGCCATAGAGCG
1 GAGCTACACCAGATACGCCTCAAAATATCTCTGCTCCATTGGCCCGGTGGCCATAGAGCG
91981587 GAGCTACACCAGATACGCCTCAAAATATCTCTGCTCCATTGGCCCGGTG
1 GAGCTACACCAGATACGCCTCAAAATATCTCTGCTCCATTGGCCCGGTG
91981636 CTGCTCAAAA
Statistics
Matches: 168, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
60 168 1.00
ACGTcount: A:0.25, C:0.31, G:0.23, T:0.21
Consensus pattern (60 bp):
GAGCTACACCAGATACGCCTCAAAATATCTCTGCTCCATTGGCCCGGTGGCCATAGAGCG
Found at i:91983128 original size:27 final size:27
Alignment explanation
Indices: 91983080--91983132 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
91983070 GTGAGGCTGC
*
91983080 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGATA
* * *
91983107 CAGATATTGTGGCTAGGCCACCAGAT
1 CAGATATTGTGACGAAGCCACCAGAT
91983133 TGCAGAGAGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.23
Consensus pattern (27 bp):
CAGATATTGTGACGAAGCCACCAGATA
Done.