Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 274 of 284
Found at i:91983376 original size:181 final size:181
Alignment explanation
Indices: 91983072--91983431 Score: 686
Period size: 181 Copynumber: 2.0 Consensus size: 181
91983062 AAATTGCAGT
* *
91983072 GAGGCTGCCAGATATTGTGACGAAGTCACCAGATACAGATATTGTGGCTAGGCCACCAGATTGCA
1 GAGGCTGCCAGATATTGTGACGAAGTCACCAGATACAGATATTGTAGCGAGGCCACCAGATTGCA
91983137 GAGAGGCTACCAAAACACTTCCTCCATCAATATAAACCCATGTCCCATGCAACATAAATAATATG
66 GAGAGGCTACCAAAACACTTCCTCCATCAATATAAACCCATGTCCCATGCAACATAAATAATATG
91983202 TCATGGCATACGTATACAGAAACAGAACATCATGCTTTTCAGAAAAAATAC
131 TCATGGCATACGTATACAGAAACAGAACATCATGCTTTTCAGAAAAAATAC
91983253 GAGGCTGCCAGATATTGTGACGAAGTCACCAGA-ACAGATATATGTAGCGAGGCCACCAGATTGC
1 GAGGCTGCCAGATATTGTGACGAAGTCACCAGATACAGATAT-TGTAGCGAGGCCACCAGATTGC
91983317 AGAGAGGCTACCAAAACACTTCCTCCATCAATATAAACCCATGTCCCATGCAACATAAATAATAT
65 AGAGAGGCTACCAAAACACTTCCTCCATCAATATAAACCCATGTCCCATGCAACATAAATAATAT
91983382 GTCATGGCATACGTATACAGAAACAGAACATCATGCTTTTCAGAAAAAAT
130 GTCATGGCATACGTATACAGAAACAGAACATCATGCTTTTCAGAAAAAAT
91983432 TAACCCTAAG
Statistics
Matches: 176, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
180 8 0.05
181 168 0.95
ACGTcount: A:0.38, C:0.23, G:0.18, T:0.22
Consensus pattern (181 bp):
GAGGCTGCCAGATATTGTGACGAAGTCACCAGATACAGATATTGTAGCGAGGCCACCAGATTGCA
GAGAGGCTACCAAAACACTTCCTCCATCAATATAAACCCATGTCCCATGCAACATAAATAATATG
TCATGGCATACGTATACAGAAACAGAACATCATGCTTTTCAGAAAAAATAC
Found at i:91983651 original size:60 final size:60
Alignment explanation
Indices: 91983557--91983672 Score: 178
Period size: 60 Copynumber: 1.9 Consensus size: 60
91983547 CTCGTCTTTT
* * * *
91983557 TACCAAAGTGGGCCCGTTGGCCCATTGGCCCGTTTTTGGCCCATTAAGCCCAAAAATACC
1 TACCAAAGTGGGCCCATTGGCCCACTGGCCCGTTTTCGACCCATTAAGCCCAAAAATACC
* *
91983617 TACCAAAGTGGGCCCATTGGCCCACTGGCTCGTTTTCGACCCATTGAGCCCAAAAA
1 TACCAAAGTGGGCCCATTGGCCCACTGGCCCGTTTTCGACCCATTAAGCCCAAAAA
91983673 AACCGTTGTG
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
60 50 1.00
ACGTcount: A:0.24, C:0.32, G:0.22, T:0.22
Consensus pattern (60 bp):
TACCAAAGTGGGCCCATTGGCCCACTGGCCCGTTTTCGACCCATTAAGCCCAAAAATACC
Found at i:91987238 original size:27 final size:27
Alignment explanation
Indices: 91987207--91987287 Score: 83
Period size: 27 Copynumber: 3.0 Consensus size: 27
91987197 CAAATTACTG
91987207 AAATACCCTTGTAGGGTAGAAATACCA
1 AAATACCCTTGTAGGGTAGAAATACCA
* * * * *
91987234 AAATACCCCTATACGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAAATACCA
* *
91987261 AGATACCCTTGTGGGGTA-AAATTACCA
1 AAATACCCTTGTAGGGTAGAAA-TACCA
91987288 TTTTGCCCTT
Statistics
Matches: 41, Mismatches: 12, Indels: 2
0.75 0.22 0.04
Matches are distributed among these distances:
26 2 0.05
27 39 0.95
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.23
Consensus pattern (27 bp):
AAATACCCTTGTAGGGTAGAAATACCA
Found at i:91987296 original size:27 final size:27
Alignment explanation
Indices: 91987266--91987322 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
91987256 TACCGAGATA
* *
91987266 CCCTTGTGGGGTAAAATTACCATTTTG
1 CCCTTATGGGGTAAAATGACCATTTTG
* * *
91987293 CCCTTATGGTGTTAAATGACTATTTTG
1 CCCTTATGGGGTAAAATGACCATTTTG
91987320 CCC
1 CCC
91987323 CTCGTGCGTA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.39
Consensus pattern (27 bp):
CCCTTATGGGGTAAAATGACCATTTTG
Found at i:91988112 original size:100 final size:100
Alignment explanation
Indices: 91987939--91988206 Score: 457
Period size: 100 Copynumber: 2.7 Consensus size: 100
91987929 CTTGTTGCAA
* * * * *
91987939 TCTGGTGGCCTTGCTACATATATTTGT-TCTGGTGACTTCATCACAATATCTGGCAGCCTCACTG
1 TCTGGTGGCCTAGCCACA-ATATCTGTATCTGGTGAATTCGTCACAATATCTGGCAGCCTCACTG
91988003 CAATCTGGTGGCTTTGCCACATATATATATATTTGT
65 CAATCTGGTGGCTTTGCCACATATATATATATTTGT
91988039 TCTGGTGGCCTAGCCACAATATCTGTATCTGGTGAATTCGTCACAATATCTGGCAGCCTCACTGC
1 TCTGGTGGCCTAGCCACAATATCTGTATCTGGTGAATTCGTCACAATATCTGGCAGCCTCACTGC
91988104 AATCTGGTGGCTTTGCCACATATATATATATTTGT
66 AATCTGGTGGCTTTGCCACATATATATATATTTGT
* *
91988139 TCTGGTGGCCTAGCCACAATATCTGTATCTGGTGAATTCGTCACAATATCTGGCAGCTTCGCTGC
1 TCTGGTGGCCTAGCCACAATATCTGTATCTGGTGAATTCGTCACAATATCTGGCAGCCTCACTGC
91988204 AAT
66 AAT
91988207 TTCTGTGGTG
Statistics
Matches: 160, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
99 7 0.04
100 153 0.96
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (100 bp):
TCTGGTGGCCTAGCCACAATATCTGTATCTGGTGAATTCGTCACAATATCTGGCAGCCTCACTGC
AATCTGGTGGCTTTGCCACATATATATATATTTGT
Found at i:91991898 original size:27 final size:27
Alignment explanation
Indices: 91991867--91992044 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
91991857 TAAATTGTAC
91991867 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
91991894 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
91991920 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
91991948 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
91991976 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
91992003 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
91992030 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
91992045 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:91991981 original size:82 final size:81
Alignment explanation
Indices: 91991868--91992023 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
91991858 AAATTGTACA
* *
91991868 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
91991932 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
91991949 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
91992014 TGCGAGTTGA
65 TGCGAATTGA
91992024 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:91992035 original size:82 final size:81
Alignment explanation
Indices: 91991864--91992044 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
91991854 GATTAAATTG
* *
91991864 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
91991929 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
91991945 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
91992009 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
91992027 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
91992045 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:91996657 original size:79 final size:80
Alignment explanation
Indices: 91996551--91996730 Score: 215
Period size: 79 Copynumber: 2.3 Consensus size: 80
91996541 TCGTTTAAAT
* * * *
91996551 GCCTTTGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATT
1 GCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGATA
* * *
91996614 TAGTGAC-TCGCACCAAT
64 TAGTCACTTAGCA-CAAA
* **
91996631 GCCTTCGGG-CTTAGCTCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATA
1 GCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATA
91996695 GTCACTTAGCACAAA
66 GTCACTTAGCACAAA
91996710 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAGCCCGGA
91996731 CATCATTCGA
Statistics
Matches: 85, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
78 3 0.04
79 59 0.69
80 23 0.27
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
GCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:91996730 original size:40 final size:40
Alignment explanation
Indices: 91996547--91996730 Score: 214
Period size: 40 Copynumber: 4.6 Consensus size: 40
91996537 CTACTCGTTT
* * *
91996547 AAATGCCTTTGGGACATAGCCCGGTTATAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCAC
* * *
91996587 AAATGCCTTCGGGACTTAACCCGGATTTAGTGACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCAC
* *
91996627 CAATGCCTTCGGG-CTTAGCTCGGA-ATTAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCAC
* * *
91996666 AAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCAC
1 AAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCAC
91996707 AAA-GCCTTCGGGACTTAGCCCGGA
1 AAATGCCTTCGGGACTTAGCCCGGA
91996731 CATCATTCGA
Statistics
Matches: 121, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 77 0.64
41 12 0.10
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
AAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCAC
Found at i:92010679 original size:75 final size:75
Alignment explanation
Indices: 92010589--92010739 Score: 293
Period size: 75 Copynumber: 2.0 Consensus size: 75
92010579 AGATTTGCAT
92010589 AAAGGGCGAAAAATGGCTCGGCAGACATTGCTAGAAGCACAAAAACGAGAAGCAATTTTGAAGCA
1 AAAGGGCGAAAAATGGCTCGGCAGACATTGCTAGAAGCACAAAAACGAGAAGCAATTTTGAAGCA
92010654 TCAAGATGAA
66 TCAAGATGAA
*
92010664 AAAGGGCGAAAAATGGCTCGGCAGACATTGCTAGAAGCACAAAATCGAGAAGCAATTTTGAAGCA
1 AAAGGGCGAAAAATGGCTCGGCAGACATTGCTAGAAGCACAAAAACGAGAAGCAATTTTGAAGCA
92010729 TCAAGATGAA
66 TCAAGATGAA
92010739 A
1 A
92010740 TAATTTTTCA
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 75 1.00
ACGTcount: A:0.44, C:0.16, G:0.25, T:0.15
Consensus pattern (75 bp):
AAAGGGCGAAAAATGGCTCGGCAGACATTGCTAGAAGCACAAAAACGAGAAGCAATTTTGAAGCA
TCAAGATGAA
Found at i:92011242 original size:25 final size:25
Alignment explanation
Indices: 92011197--92011247 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
92011187 ACTCTTCTCA
* *
92011197 TCTCTTCACTTCTCTCACATTTTTC
1 TCTCTTCACTTCCCTCACATTATTC
*
92011222 TCTCTTCATTTCCCT-ATCATTATTC
1 TCTCTTCACTTCCCTCA-CATTATTC
92011247 T
1 T
92011248 TCATTCCCTC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 1 0.05
25 21 0.95
ACGTcount: A:0.14, C:0.33, G:0.00, T:0.53
Consensus pattern (25 bp):
TCTCTTCACTTCCCTCACATTATTC
Found at i:92018741 original size:42 final size:42
Alignment explanation
Indices: 92018694--92018799 Score: 151
Period size: 42 Copynumber: 2.5 Consensus size: 42
92018684 ATAGCCTAGT
* * *
92018694 TATGGTCTTCCACGAAGTCTCATATCGATACCGTATTCCAGA
1 TATGGTCTTACACGAAGTCTCATATCGATACCATATCCCAGA
*
92018736 TATGGTCTTACACGAAGTCTCATATCGATGCCATATCCCAGA
1 TATGGTCTTACACGAAGTCTCATATCGATACCATATCCCAGA
*
92018778 TAAGGTCTTACACGCAA-TCTCA
1 TATGGTCTTACACG-AAGTCTCA
92018800 ATAACCCTAA
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
42 56 0.97
43 2 0.03
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.29
Consensus pattern (42 bp):
TATGGTCTTACACGAAGTCTCATATCGATACCATATCCCAGA
Found at i:92019628 original size:12 final size:13
Alignment explanation
Indices: 92019611--92019639 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
92019601 AGATGGACAA
92019611 AATTTGGC-TTTT
1 AATTTGGCTTTTT
92019623 AATTTGGCTTTTT
1 AATTTGGCTTTTT
92019636 AATT
1 AATT
92019640 CATTTAATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.50
13 8 0.50
ACGTcount: A:0.21, C:0.07, G:0.14, T:0.59
Consensus pattern (13 bp):
AATTTGGCTTTTT
Found at i:92033771 original size:44 final size:42
Alignment explanation
Indices: 92033709--92033826 Score: 130
Period size: 43 Copynumber: 2.8 Consensus size: 42
92033699 TGATGTATTG
* * *
92033709 TACCAATGCCATGTCCCAGACATGGTCTTACATGGAAATCTCA
1 TACCGATGCCATGTCCCAGACATGGTCTTACA-AGAAACCTCA
* * **
92033752 TATCGATGCCAATATCCCAG-CTATGGTCTTACAAGATGCCTCA
1 TACCGATGCC-ATGTCCCAGAC-ATGGTCTTACAAGAAACCTCA
*
92033795 TGCCGATGCCATGTCCCAGACATGGTCTTACA
1 TACCGATGCCATGTCCCAGACATGGTCTTACA
92033827 CTGGCTCACA
Statistics
Matches: 62, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
42 19 0.31
43 24 0.39
44 19 0.31
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.26
Consensus pattern (42 bp):
TACCGATGCCATGTCCCAGACATGGTCTTACAAGAAACCTCA
Found at i:92033916 original size:95 final size:95
Alignment explanation
Indices: 92033797--92034207 Score: 680
Period size: 95 Copynumber: 4.3 Consensus size: 95
92033787 ATGCCTCATG
* *
92033797 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAATGATGTCGATGCCATGATCCAG
1 CCGATACCATATCCCAGACATGGTCTTACACTGGCTCACATAATGATGTCGATGCCATGATCCAG
92033862 ACATGTCTTACACTGGCTCACATAACAATA
66 ACATGTCTTACACTGGCTCACATAACAATA
92033892 CCGATACCATATCCCAGACATGGTCTTACACTGGCTCACATAATGATGTCGATGCCATGATCCAG
1 CCGATACCATATCCCAGACATGGTCTTACACTGGCTCACATAATGATGTCGATGCCATGATCCAG
92033957 ACATGTCTTACACTGGCTCACATAACAATA
66 ACATGTCTTACACTGGCTCACATAACAATA
92033987 CCGATACCATATCCCAGACATGGTCTTACACTGGCTCACATAATGATGTCGATGCCATGATCCAG
1 CCGATACCATATCCCAGACATGGTCTTACACTGGCTCACATAATGATGTCGATGCCATGATCCAG
92034052 ACATGTCTTACACTGGCTCACATAACAATA
66 ACATGTCTTACACTGGCTCACATAACAATA
**
92034082 CCGATACCATATCCCAGACATGGTCTTACACTGGCTCACATAACAATGTCGATGCCATG-TCCCA
1 CCGATACCATATCCCAGACATGGTCTTACACTGGCTCACATAATGATGTCGATGCCATGAT-CCA
* * * * * *
92034146 AACATGGTCTTATACGGGATCACATAATAATG
65 GACAT-GTCTTACACTGGCTCACATAACAATA
* * *
92034178 TCGATGCCATATCCCAGATATGGTCTTACA
1 CCGATACCATATCCCAGACATGGTCTTACA
92034208 TGGTTACACA
Statistics
Matches: 301, Mismatches: 13, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
94 1 0.00
95 252 0.84
96 48 0.16
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (95 bp):
CCGATACCATATCCCAGACATGGTCTTACACTGGCTCACATAATGATGTCGATGCCATGATCCAG
ACATGTCTTACACTGGCTCACATAACAATA
Found at i:92034219 original size:48 final size:48
Alignment explanation
Indices: 92033798--92034207 Score: 544
Period size: 48 Copynumber: 8.6 Consensus size: 48
92033788 TGCCTCATGC
* **
92033798 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAATGATGT
1 CGATGCCATATCCCAGACATGGTCTTACACTGGCTCACATAACAATGT
**
92033846 CGATGCCATGAT-CCAGACAT-GTCTTACACTGGCTCACATAACAATAC
1 CGATGCCAT-ATCCCAGACATGGTCTTACACTGGCTCACATAACAATGT
* **
92033893 CGATACCATATCCCAGACATGGTCTTACACTGGCTCACATAATGATGT
1 CGATGCCATATCCCAGACATGGTCTTACACTGGCTCACATAACAATGT
**
92033941 CGATGCCATGAT-CCAGACAT-GTCTTACACTGGCTCACATAACAATAC
1 CGATGCCAT-ATCCCAGACATGGTCTTACACTGGCTCACATAACAATGT
* **
92033988 CGATACCATATCCCAGACATGGTCTTACACTGGCTCACATAATGATGT
1 CGATGCCATATCCCAGACATGGTCTTACACTGGCTCACATAACAATGT
**
92034036 CGATGCCATGAT-CCAGACAT-GTCTTACACTGGCTCACATAACAATAC
1 CGATGCCAT-ATCCCAGACATGGTCTTACACTGGCTCACATAACAATGT
*
92034083 CGATACCATATCCCAGACATGGTCTTACACTGGCTCACATAACAATGT
1 CGATGCCATATCCCAGACATGGTCTTACACTGGCTCACATAACAATGT
* * * * * *
92034131 CGATGCCATGTCCCAAACATGGTCTTATACGGGATCACATAATAATGT
1 CGATGCCATATCCCAGACATGGTCTTACACTGGCTCACATAACAATGT
*
92034179 CGATGCCATATCCCAGATATGGTCTTACA
1 CGATGCCATATCCCAGACATGGTCTTACA
92034208 TGGTTACACA
Statistics
Matches: 314, Mismatches: 39, Indels: 18
0.85 0.11 0.05
Matches are distributed among these distances:
46 6 0.02
47 117 0.37
48 186 0.59
49 5 0.02
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (48 bp):
CGATGCCATATCCCAGACATGGTCTTACACTGGCTCACATAACAATGT
Found at i:92046570 original size:51 final size:51
Alignment explanation
Indices: 92046515--92046616 Score: 170
Period size: 51 Copynumber: 2.0 Consensus size: 51
92046505 CATTTGTCAT
92046515 AATTAAGCAGAGTT-ATTTGCGAGCCTAGACATAGGGTGACAAGATTTTGCC
1 AATTAAGCAGAGTTGA-TTGCGAGCCTAGACATAGGGTGACAAGATTTTGCC
* *
92046566 AATTAAGCGGAGTTGATTGCGCGCCTAGACATAGGGTGACAAGATTTTGCC
1 AATTAAGCAGAGTTGATTGCGAGCCTAGACATAGGGTGACAAGATTTTGCC
92046617 GGATTAGGGT
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
51 47 0.98
52 1 0.02
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.26
Consensus pattern (51 bp):
AATTAAGCAGAGTTGATTGCGAGCCTAGACATAGGGTGACAAGATTTTGCC
Found at i:92047395 original size:40 final size:40
Alignment explanation
Indices: 92047340--92047423 Score: 159
Period size: 40 Copynumber: 2.1 Consensus size: 40
92047330 CACAGTATGT
*
92047340 AGAAACCAAAGAGAAATAACGCGAAGCTTAAGATACACGG
1 AGAAACCAAAGAGAAATAACGCGAAGCTTAAGATACACGA
92047380 AGAAACCAAAGAGAAATAACGCGAAGCTTAAGATACACGA
1 AGAAACCAAAGAGAAATAACGCGAAGCTTAAGATACACGA
92047420 AGAA
1 AGAA
92047424 CGAGCAAGAA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.52, C:0.17, G:0.21, T:0.10
Consensus pattern (40 bp):
AGAAACCAAAGAGAAATAACGCGAAGCTTAAGATACACGA
Found at i:92049963 original size:50 final size:50
Alignment explanation
Indices: 92049889--92049990 Score: 177
Period size: 50 Copynumber: 2.0 Consensus size: 50
92049879 ACTTTTAAAG
*
92049889 TAAACAACACTCGTTTAAAACCTTATATTGATGAGATTGATAGCAGGAAT
1 TAAACAACACCCGTTTAAAACCTTATATTGATGAGATTGATAGCAGGAAT
* *
92049939 TAAACAACACCCGTTTAAAACCTTATTTTGATGAGATTGATAGTAGGAAT
1 TAAACAACACCCGTTTAAAACCTTATATTGATGAGATTGATAGCAGGAAT
92049989 TA
1 TA
92049991 GGAGAATAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.31
Consensus pattern (50 bp):
TAAACAACACCCGTTTAAAACCTTATATTGATGAGATTGATAGCAGGAAT
Found at i:92054849 original size:37 final size:37
Alignment explanation
Indices: 92054799--92054877 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
92054789 TTATTACGAA
* *
92054799 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
92054836 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
92054873 GTCTT
1 GTCTT
92054878 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:92055122 original size:49 final size:49
Alignment explanation
Indices: 92054998--92055137 Score: 198
Period size: 47 Copynumber: 2.9 Consensus size: 49
92054988 CTTCGGGACT
* * * * *
92054998 TATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
92055045 TGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
92055092 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGG
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGG
92055138 AAAAAACTCC
Statistics
Matches: 82, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
46 1 0.01
47 43 0.52
49 38 0.46
ACGTcount: A:0.28, C:0.31, G:0.10, T:0.31
Consensus pattern (49 bp):
TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
Found at i:92058465 original size:40 final size:40
Alignment explanation
Indices: 92058367--92058549 Score: 158
Period size: 40 Copynumber: 4.6 Consensus size: 40
92058357 CCAGCAAGAT
* * *
92058367 TGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** *
92058407 TGCTCTTCGAAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* ** * * *
92058447 TGCTCTTCGGGACTTAGCCCAGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAA
* **
92058488 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGA-CTTAGCCCGGATA-CATCAC-TAGCACGAA
*
92058528 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
92058550 CATCATTCGA
Statistics
Matches: 114, Mismatches: 24, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
39 3 0.03
40 91 0.80
41 20 0.18
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:92058495 original size:80 final size:81
Alignment explanation
Indices: 92058367--92058546 Score: 188
Period size: 80 Copynumber: 2.2 Consensus size: 81
92058357 CCAGCAAGAT
* * * * *
92058367 TGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAATGCTCTTCGAAACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCAGATATATAACTAGCACCAATGCTCTTCGAAACTTAGCCCGGATA
*
92058432 -CATCAC-TAGCATGAA
66 TCATCACTTAGCA-CAA
* * * * *
92058447 TGCTCTTCGGGACTTAGCCCAGATTTAGTAACTCGCACCAATGC-CTTCGGATCTTAGTCCGGAT
1 TGCTCTTCGGGACTTAGCCCAGATATA-TAACTAGCACCAATGCTCTTCGAAACTTAGCCCGGAT
**
92058511 ATGGTCACTTAGCACAA
65 ATCATCACTTAGCACAA
*
92058528 AGC-CTTCGGGACTTAGCCC
1 TGCTCTTCGGGACTTAGCCC
92058547 GGACATCATT
Statistics
Matches: 83, Mismatches: 14, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
80 57 0.69
81 21 0.25
82 5 0.06
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (81 bp):
TGCTCTTCGGGACTTAGCCCAGATATATAACTAGCACCAATGCTCTTCGAAACTTAGCCCGGATA
TCATCACTTAGCACAA
Found at i:92058898 original size:29 final size:29
Alignment explanation
Indices: 92058859--92058937 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
92058849 CTTAATAATC
*
92058859 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
92058889 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
92058918 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
92058938 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:92058980 original size:43 final size:43
Alignment explanation
Indices: 92058919--92059021 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
92058909 TGCATTTCAA
92058919 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
92058962 GCCCGCACACTTAGTGCCAATCTCACAACTGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
92059005 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
92059022 TGAAAACCAA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.26, C:0.35, G:0.16, T:0.23
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:92070274 original size:40 final size:40
Alignment explanation
Indices: 92070204--92070621 Score: 761
Period size: 40 Copynumber: 10.5 Consensus size: 40
92070194 AAACCAAGTA
* *
92070204 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
92070243 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
92070283 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
92070323 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
92070363 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
92070403 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
92070443 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
92070483 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
92070523 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
92070563 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
92070603 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
92070622 TTATCATCCG
Statistics
Matches: 372, Mismatches: 4, Indels: 5
0.98 0.01 0.01
Matches are distributed among these distances:
39 15 0.04
40 357 0.96
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:92079205 original size:79 final size:81
Alignment explanation
Indices: 92079103--92079286 Score: 222
Period size: 79 Copynumber: 2.3 Consensus size: 81
92079093 GCTCCTCGTT
* *
92079103 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAACC
*
92079165 CGGAT-TTAGTAAC-TCGCA
63 CGGATATT-GTAACTTAGCA
**
92079183 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
*
92079247 ATATTGTCACTTAGCA
66 ATATTGTAACTTAGCA
92079263 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
92079287 CATCATTCAA
Statistics
Matches: 92, Mismatches: 6, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
78 14 0.15
79 56 0.61
80 22 0.24
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATTGTAACTTAGCA
Found at i:92079220 original size:39 final size:41
Alignment explanation
Indices: 92079103--92079286 Score: 199
Period size: 40 Copynumber: 4.6 Consensus size: 41
92079093 GCTCCTCGTT
* *
92079103 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAATCTCGCA
* *
92079143 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAA-CTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
92079183 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
* * *
92079222 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAATC-TCGCA
92079263 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
92079287 CATCATTCAA
Statistics
Matches: 128, Mismatches: 7, Indels: 19
0.83 0.05 0.12
Matches are distributed among these distances:
38 3 0.02
39 48 0.38
40 66 0.52
41 11 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
Found at i:92087085 original size:40 final size:40
Alignment explanation
Indices: 92087041--92087302 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
92087031 GCTCCTCGTT
* *
92087041 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
92087081 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
92087121 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
92087160 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
92087199 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
92087238 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
92087279 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
92087303 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:92091491 original size:35 final size:35
Alignment explanation
Indices: 92091445--92091514 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
92091435 CTAAGTCACT
*
92091445 TAGCTTTGATACCAATTATATGGCATGTATAGCTA
1 TAGCTTTGATACCAATTATATGACATGTATAGCTA
92091480 TAGCTTTGATACCAATTATATGACATGTATAGCTA
1 TAGCTTTGATACCAATTATATGACATGTATAGCTA
92091515 GACTCGTACG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (35 bp):
TAGCTTTGATACCAATTATATGACATGTATAGCTA
Found at i:92097126 original size:27 final size:27
Alignment explanation
Indices: 92097088--92097306 Score: 276
Period size: 27 Copynumber: 8.1 Consensus size: 27
92097078 GGTCGTTATC
92097088 TGACCGTAATACCCCTGTAGGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
*
92097115 TGACTGTAATACCCCTGTAGGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
* *
92097142 TGACTGTAATACCCTTGTAGGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
**
92097169 TGACCGTAATACCTTTGTAGGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
*
92097196 TGACCGTAATACCCCTCTAGGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
* * *
92097223 TGATCGTAATGCCCCTGTAAGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
* * * * * *
92097250 TTACTGTAGTGCCCTTGTAGGTTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
* * *
92097277 TGACCGTAATACCCCTATATGGTAATA
1 TGACCGTAATACCCCTGTAGGGTAAAA
92097304 TGA
1 TGA
92097307 TGATTATGCC
Statistics
Matches: 165, Mismatches: 27, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 165 1.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (27 bp):
TGACCGTAATACCCCTGTAGGGTAAAA
Found at i:92097525 original size:27 final size:27
Alignment explanation
Indices: 92097448--92097526 Score: 104
Period size: 27 Copynumber: 2.9 Consensus size: 27
92097438 GGAAGTACTG
* *
92097448 TACTGGTGGCTATGTCACATTCACTAT
1 TACTGGTGGCTATGTCACATTTACTAA
* *
92097475 TACTGGTGGCTATGTCATAATTACTAA
1 TACTGGTGGCTATGTCACATTTACTAA
* *
92097502 TACTGGTGGCTTTGCCACATTTACT
1 TACTGGTGGCTATGTCACATTTACT
92097527 GTTCTGGAAG
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.38
Consensus pattern (27 bp):
TACTGGTGGCTATGTCACATTTACTAA
Found at i:92099855 original size:40 final size:40
Alignment explanation
Indices: 92099766--92099895 Score: 118
Period size: 40 Copynumber: 3.3 Consensus size: 40
92099756 CAGCAAAAGG
* **
92099766 TCAAGCATTAGTGGCA-TTTATGAAAAAAAACGCTATAAA
1 TCAAGCATTAGTGGCACTTTTTGAAAAACGACGCTATAAA
** * *
92099805 TTGAGGATTAGTGGCACTTTTTGAAAAACGTCGCTATAAA
1 TCAAGCATTAGTGGCACTTTTTGAAAAACGACGCTATAAA
* * * * * * *
92099845 TCAATCATTAGCGGCGCATTTTAAAAAACGCCGCTATAGA
1 TCAAGCATTAGTGGCACTTTTTGAAAAACGACGCTATAAA
*
92099885 TTAAGCATTAG
1 TCAAGCATTAG
92099896 CGATGGTTTC
Statistics
Matches: 71, Mismatches: 19, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
39 13 0.18
40 58 0.82
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.28
Consensus pattern (40 bp):
TCAAGCATTAGTGGCACTTTTTGAAAAACGACGCTATAAA
Found at i:92101811 original size:22 final size:23
Alignment explanation
Indices: 92101786--92101845 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 23
92101776 TGGACTGAAT
92101786 ATAAAAATTTAAACTAAAT-AAA
1 ATAAAAATTTAAACTAAATAAAA
*
92101808 ATAAATAA-ATAAA-TAAATAAAA
1 ATAAA-AATTTAAACTAAATAAAA
*
92101830 ATAAAACTTTACAACT
1 ATAAAAATTTA-AACT
92101846 TGGGCCACTT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 6 0.20
22 19 0.63
23 4 0.13
24 1 0.03
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.27
Consensus pattern (23 bp):
ATAAAAATTTAAACTAAATAAAA
Found at i:92101813 original size:4 final size:4
Alignment explanation
Indices: 92101795--92101828 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
92101785 TATAAAAATT
92101795 TAAA CTAAA TAAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA -TAAA T-AAA TAAA TAAA TAAA TAAA TAAA
92101829 AATAAAACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (4 bp):
TAAA
Found at i:92103234 original size:23 final size:22
Alignment explanation
Indices: 92103182--92103234 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
92103172 TCCACGTCTT
*
92103182 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
92103204 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
92103227 TTTCTTTT
1 TTTCTTTT
92103235 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:92106500 original size:43 final size:43
Alignment explanation
Indices: 92106434--92106519 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 43
92106424 AGTTCATTAT
* * *
92106434 AAGATTTCCTTGATTAAGTAAATGTATTATATCTTTTATTACC
1 AAGATTTACTTGATTAAGAAAATGCATTATATCTTTTATTACC
* *
92106477 AAGATTTACTTGATTAAGAAAATGCATTGTATGTTTTATTACC
1 AAGATTTACTTGATTAAGAAAATGCATTATATCTTTTATTACC
92106520 TTGCAATGTG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.34, C:0.10, G:0.12, T:0.44
Consensus pattern (43 bp):
AAGATTTACTTGATTAAGAAAATGCATTATATCTTTTATTACC
Found at i:92107312 original size:42 final size:43
Alignment explanation
Indices: 92107246--92107328 Score: 132
Period size: 42 Copynumber: 2.0 Consensus size: 43
92107236 TTGCAGCAGC
*
92107246 GTTTGTGTGAAAAACGCCACTAAAGGTCGTGTTCTATAGCGGT
1 GTTTGTGTGAAAAACGCCACTAAAGGTCATGTTCTATAGCGGT
* *
92107289 GTTTGTG-GAAAAGCGCCGCTAAAGGTCATGTTCTATAGCG
1 GTTTGTGTGAAAAACGCCACTAAAGGTCATGTTCTATAGCG
92107329 ACGTTTTTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
42 30 0.81
43 7 0.19
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (43 bp):
GTTTGTGTGAAAAACGCCACTAAAGGTCATGTTCTATAGCGGT
Found at i:92111845 original size:21 final size:20
Alignment explanation
Indices: 92111821--92111887 Score: 63
Period size: 21 Copynumber: 3.5 Consensus size: 20
92111811 TTTTAAATTG
92111821 TATATATATTATTTTATGTAT
1 TATATATATTATTTTAT-TAT
* *
92111842 TATATATTTTATATTATTAT
1 TATATATATTATTTTATTAT
92111862 T-TACT-TA-TATTTTATTA-
1 TATA-TATATTATTTTATTAT
92111879 TAT-TATATT
1 TATATATATT
92111888 TTTATCACAT
Statistics
Matches: 38, Mismatches: 4, Indels: 11
0.72 0.08 0.21
Matches are distributed among these distances:
16 1 0.03
17 3 0.08
18 11 0.29
19 3 0.08
20 5 0.13
21 15 0.39
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.64
Consensus pattern (20 bp):
TATATATATTATTTTATTAT
Found at i:92111851 original size:16 final size:18
Alignment explanation
Indices: 92111819--92111853 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
92111809 TATTTTAAAT
92111819 TGTATATATATTATTTTA
1 TGTATATATATTATTTTA
92111837 TGTAT-TATA-TATTTTA
1 TGTATATATATTATTTTA
92111853 T
1 T
92111854 ATTATTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
17 4 0.24
18 5 0.29
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (18 bp):
TGTATATATATTATTTTA
Found at i:92111855 original size:26 final size:26
Alignment explanation
Indices: 92111825--92111982 Score: 71
Period size: 26 Copynumber: 6.0 Consensus size: 26
92111815 AAATTGTATA
92111825 TATATTATTTTATGTATTATATATTT
1 TATATTATTTTATGTATTATATATTT
* *
92111851 TATATTA--TTATTTACTTATATTTTAT
1 TATATTATTTTATGTA-TTATATATT-T
* *
92111877 TATATTATATTT-T-TATCACATAATATT
1 TATATTAT-TTTATGTATTATAT-AT-TT
**
92111904 TATA-TATTTT-TACATTATTATATTAT
1 TATATTATTTTATGTATTA-TATATT-T
* * *
92111930 TTTA-TATTTTA-GCAATATATTATTT
1 TATATTATTTTATGTATTATA-TATTT
* * *
92111955 CATATTATTATTATCTATTATATTTTT
1 TATATTATT-TTATGTATTATATATTT
92111982 T
1 T
92111983 TATGTATATT
Statistics
Matches: 99, Mismatches: 18, Indels: 29
0.68 0.12 0.20
Matches are distributed among these distances:
24 6 0.06
25 18 0.18
26 49 0.49
27 17 0.17
28 7 0.07
29 2 0.02
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.62
Consensus pattern (26 bp):
TATATTATTTTATGTATTATATATTT
Found at i:92111892 original size:23 final size:24
Alignment explanation
Indices: 92111830--92111980 Score: 76
Period size: 23 Copynumber: 6.0 Consensus size: 24
92111820 GTATATATAT
*
92111830 TATT-TTATGTATTATATATTTTA
1 TATTATTATTTATTATATATTTTA
*
92111853 TATTATTATTTACTTATATTTTATTA
1 TATTATTATTTA-TTATATATT-TTA
* *
92111879 TATTATATTTTTATCACATAATATTTATA
1 TATTAT-TATTTAT--TAT-ATATTT-TA
* *
92111908 TATTTTTACATTATTATATTATTTTA
1 TATTATTA-TTTATTATA-TATTTTA
** * *
92111934 TATT-TTA-GCAATATATTATTTCA
1 TATTATTATTTATTATA-TATTTTA
92111957 TATTATTA-TTATCTATTATATTTT
1 TATTATTATTTAT-TA-TATATTTT
92111981 TTTATGTATA
Statistics
Matches: 98, Mismatches: 17, Indels: 24
0.71 0.12 0.17
Matches are distributed among these distances:
23 20 0.20
24 10 0.10
25 18 0.18
26 19 0.19
27 12 0.12
28 4 0.04
29 15 0.15
ACGTcount: A:0.32, C:0.05, G:0.01, T:0.62
Consensus pattern (24 bp):
TATTATTATTTATTATATATTTTA
Found at i:92112171 original size:21 final size:22
Alignment explanation
Indices: 92112137--92112180 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
92112127 TATTTCAAAA
*
92112137 TTCATTATTAATT-ACTATGTT
1 TTCATTATTAATTAAATATGTT
92112158 TTCATGTATT-ATTAAATATGTT
1 TTCAT-TATTAATTAAATATGTT
92112180 T
1 T
92112181 ATTATCTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.57
Consensus pattern (22 bp):
TTCATTATTAATTAAATATGTT
Found at i:92124417 original size:206 final size:206
Alignment explanation
Indices: 92124055--92124604 Score: 836
Period size: 206 Copynumber: 2.7 Consensus size: 206
92124045 GTAGATATGG
*
92124055 CTGAAGTAAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACAAATTGAAATCATAGCT
1 CTGAAGT-AGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAATCATAGCT
* *
92124120 GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAA
65 GATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * * **
92124185 AGAACAAATCGAAGTTTGGCGTCTCCATATTCAACGGA-GAGCAGATACATAGCAAATCTGGCCT
130 AGAACAAACCAAAGTTTGGCGTCTCCATATTCAACGGAGGA-CAGACACATAGCAAATCTAACCT
* *
92124249 TTAGCT-ATTTATA
194 TTAGATGA-TTAGA
*
92124262 CTGAAGTAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAATCATAGCTG
1 CTGAAGTAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAATCATAGCTG
* *
92124327 ATTTAGCTTTCACGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* *
92124392 GAACAAACCAAAGTTTGGCGTCTCCATATTCGACGGAGGACAGACACATAGCAGATCTAACCTTT
131 GAACAAACCAAAGTTTGGCGTCTCCATATTCAACGGAGGACAGACACATAGCAAATCTAACCTTT
92124457 AGATGATTAGA
196 AGATGATTAGA
* * * *
92124468 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGA-CATAGCT
1 CTGAAGTAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACAAATCGAA-ATCATAGCT
* * * *
92124532 GATTTGGTTTTCGCGTGCTTACACTGAAGCAAATCTAAGATGATTTGGCAACTCTGTATTGTCAG
65 GATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
92124597 AGAACAAA
130 AGAACAAA
92124605 TCGAAGAAGC
Statistics
Matches: 314, Mismatches: 26, Indels: 7
0.90 0.07 0.02
Matches are distributed among these distances:
206 303 0.96
207 11 0.04
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (206 bp):
CTGAAGTAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAATCATAGCTG
ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
GAACAAACCAAAGTTTGGCGTCTCCATATTCAACGGAGGACAGACACATAGCAAATCTAACCTTT
AGATGATTAGA
Found at i:92126360 original size:23 final size:26
Alignment explanation
Indices: 92126334--92126400 Score: 72
Period size: 25 Copynumber: 2.7 Consensus size: 26
92126324 ATATATCTAT
92126334 TATT-TTATGTA-TTATATATT-TTA
1 TATTATTATGTACTTATATATTATTA
* *
92126357 TATTATTATTTACTTATATTTTATTA
1 TATTATTATGTACTTATATATTATTA
92126383 TATTA-TAT-TACTTCATAT
1 TATTATTATGTACTT-ATAT
92126401 TTTTCTATAA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
23 4 0.11
24 11 0.29
25 15 0.39
26 8 0.21
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.63
Consensus pattern (26 bp):
TATTATTATGTACTTATATATTATTA
Found at i:92126362 original size:21 final size:21
Alignment explanation
Indices: 92126345--92126388 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 21
92126335 ATTTTATGTA
92126345 TTATATATTTTATATTATTAT
1 TTATATATTTTATATTATTAT
92126366 TTACTTATATTTTAT-TATATTAT
1 TTA--TATATTTTATAT-TATTAT
92126389 ATTACTTCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 3 0.15
22 1 0.05
23 16 0.80
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (21 bp):
TTATATATTTTATATTATTAT
Found at i:92126373 original size:25 final size:25
Alignment explanation
Indices: 92126345--92126463 Score: 72
Period size: 25 Copynumber: 4.8 Consensus size: 25
92126335 ATTTTATGTA
92126345 TTATATATTTTATATTATTATTTAC
1 TTATATATTTTATATTATTATTTAC
*
92126370 TTATATTTTATTATATTA-TA-TTAC
1 TTATATATT-TTATATTATTATTTAC
* * *
92126394 TTCATAT-TTTTCTATAATCATATTA-
1 TT-ATATATTTTATATTATTAT-TTAC
* * *
92126419 ATATATATTTTAACATATATCA-TTAC
1 TTATATATTTT-ATAT-TATTATTTAC
*
92126445 TTAT-TA-TTTATTTTATTAT
1 TTATATATTTTATATTATTAT
92126464 ATTTTTATCA
Statistics
Matches: 72, Mismatches: 12, Indels: 22
0.68 0.11 0.21
Matches are distributed among these distances:
22 4 0.06
23 8 0.11
24 16 0.22
25 24 0.33
26 16 0.22
27 4 0.06
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.60
Consensus pattern (25 bp):
TTATATATTTTATATTATTATTTAC
Found at i:92126392 original size:5 final size:5
Alignment explanation
Indices: 92126343--92126392 Score: 50
Period size: 5 Copynumber: 10.0 Consensus size: 5
92126333 TTATTTTATG
* *
92126343 TATTA TA-TA TTTTA TATTA TTATT- TACTTA TATTT TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA -TATTA TA-TTA TATTA TATTA TATTA TATTA
92126393 CTTCATATTT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
4 5 0.14
5 26 0.70
6 6 0.16
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (5 bp):
TATTA
Found at i:92126505 original size:24 final size:26
Alignment explanation
Indices: 92126447--92126518 Score: 71
Period size: 24 Copynumber: 2.8 Consensus size: 26
92126437 ATCATTACTT
92126447 ATTATT-TATTTTATTATATTTTTATC
1 ATTATTATA-TTTATTATATTTTTATC
* *
92126473 A-CATAATATTTA-TATATTTTTA-C
1 ATTATTATATTTATTATATTTTTATC
*
92126496 ATTATTATATTATTTTATATTTT
1 ATTATTATATT-TATTATATTTT
92126519 AACAATATAT
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
23 2 0.05
24 17 0.46
25 7 0.19
26 11 0.30
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (26 bp):
ATTATTATATTTATTATATTTTTATC
Found at i:92126541 original size:28 final size:26
Alignment explanation
Indices: 92126447--92126541 Score: 65
Period size: 26 Copynumber: 3.7 Consensus size: 26
92126437 ATCATTACTT
* *
92126447 ATTATT-TATTTTATTATATTTTTATC
1 ATTATTATATTATATTATA-TTTTAAC
* * *
92126473 A-CATAATATT-TA-TATATTTTTAC
1 ATTATTATATTATATTATATTTTAAC
*
92126496 ATTATTATATTATTTTATATTTTAAC
1 ATTATTATATTATATTATATTTTAAC
92126522 AATATATTAT-TTCATATTAT
1 -AT-TATTATATT-ATATTAT
92126542 TATTATCTAT
Statistics
Matches: 53, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
23 6 0.11
24 11 0.21
25 5 0.09
26 15 0.28
27 4 0.08
28 12 0.23
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (26 bp):
ATTATTATATTATATTATATTTTAAC
Found at i:92126541 original size:41 final size:41
Alignment explanation
Indices: 92126484--92126561 Score: 106
Period size: 43 Copynumber: 1.9 Consensus size: 41
92126474 CATAATATTT
*
92126484 ATATATTTTTACATTATTA-TAT-TATTTTATATTTTAACA
1 ATATATTTTTACATTATTATTATCTATTATATATTTTAACA
*
92126523 ATATATTATTTCATATTATTATTATCTATTATATATTTT
1 ATATATT-TTT-ACATTATTATTATCTATTATATATTTT
92126562 TTTATGTATA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
39 7 0.21
40 3 0.09
41 8 0.24
42 3 0.09
43 12 0.36
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (41 bp):
ATATATTTTTACATTATTATTATCTATTATATATTTTAACA
Found at i:92126751 original size:21 final size:22
Alignment explanation
Indices: 92126717--92126760 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
92126707 TATTTCAAAA
92126717 TTCATTATTAATT-AATATGTT
1 TTCATTATTAATTAAATATGTT
92126738 TTCATGTATT-ATTAAATATGTT
1 TTCAT-TATTAATTAAATATGTT
92126760 T
1 T
92126761 ATTATCTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.32, C:0.05, G:0.07, T:0.57
Consensus pattern (22 bp):
TTCATTATTAATTAAATATGTT
Found at i:92131098 original size:40 final size:40
Alignment explanation
Indices: 92131043--92131286 Score: 384
Period size: 40 Copynumber: 6.1 Consensus size: 40
92131033 GGATGATAAT
* *
92131043 GAAGGCATTTGTGCGAGTTACTATATCCAGGCTAAATCCC
1 GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
92131083 GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
1 GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
*
92131123 GAAGGCATTTGTGTGAGTTACTATATCCGGGCTAAGTCCC
1 GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
*
92131163 GAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCC
1 GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
* *
92131203 GAAGGCAATTGTGCGAGTTACTATATCCGGGCTATGTCCC
1 GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
* * *
92131243 GAAGGCATTTGAGCGAG-TAGCTATATCC-GGTTAAATCCC
1 GAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCC
92131282 GAAGG
1 GAAGG
92131287 TACTTGGTTT
Statistics
Matches: 190, Mismatches: 13, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
39 15 0.08
40 175 0.92
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
Found at i:92137434 original size:41 final size:43
Alignment explanation
Indices: 92137354--92137613 Score: 244
Period size: 45 Copynumber: 5.9 Consensus size: 43
92137344 TTTATCAAAT
* * * *
92137354 CACCGGCATTTAGCCTGCTAGGTTTTAAA--CCTGA-ATTCATC-
1 CACCGGCATTTAGCCTGCTAGG-CTCAAAGGCCCGATAGT-ATCG
* * * **
92137395 CACCGGCATTTTGCCTGCTAGGCTCGAA-GCCCGAT-TTCATTT
1 CACCGGCATTTAGCCTGCTAGGCTCAAAGGCCCGATAGT-ATCG
*
92137437 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCTGAATAGTATCG
1 CACCGGCATT-TAGCCTGCTAGGCTCAAAGGCCCG-ATAGTATCG
*
92137482 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCT
1 CACCGGCATT-TAGCCTGCTAGGCTCAAAGGCCCG-ATAGTATCG
* *
92137527 CACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCT
1 CACCGGCAT-TTAGCCTGCTAGGCTCAAAGGCCCG-ATAGTATCG
* *
92137572 TACCGGTATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
1 CACCGGCATT-TAGCCTGCTAGGCTCAAAGGCCCG-ATAGTA
92137614 CCGTACAATA
Statistics
Matches: 192, Mismatches: 18, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
40 3 0.02
41 30 0.16
42 10 0.05
43 16 0.08
44 4 0.02
45 128 0.67
46 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (43 bp):
CACCGGCATTTAGCCTGCTAGGCTCAAAGGCCCGATAGTATCG
Found at i:92137494 original size:45 final size:45
Alignment explanation
Indices: 92137395--92137613 Score: 320
Period size: 45 Copynumber: 4.9 Consensus size: 45
92137385 TGAATTCATC
* * * *
92137395 CACCGGCATT-TTGCCTGCTAGGCTCGAA-GCCCG-AT-TTCATTT
1 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATCT
* *
92137437 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCTGAATAGTATCG
1 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCT
92137482 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCT
1 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCT
*
92137527 CACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCT
1 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCT
* *
92137572 TACCGGTATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
1 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
92137614 CCGTACAATA
Statistics
Matches: 161, Mismatches: 12, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
42 10 0.06
43 16 0.10
44 4 0.02
45 130 0.81
46 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (45 bp):
CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCT
Found at i:92147594 original size:28 final size:26
Alignment explanation
Indices: 92147563--92147626 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
92147553 AATTACTTGA
* *
92147563 ATACCCCTATGTATGGAAAATTACTATT
1 ATACCCCTA-G-ATGCAAAATTACCATT
* *
92147591 ATACCCCTAGGTGCAAGATTACCATT
1 ATACCCCTAGATGCAAAATTACCATT
92147617 ATACCCCTAG
1 ATACCCCTAG
92147627 GGTTACTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 22 0.69
27 1 0.03
28 9 0.28
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.30
Consensus pattern (26 bp):
ATACCCCTAGATGCAAAATTACCATT
Found at i:92147765 original size:27 final size:26
Alignment explanation
Indices: 92147735--92147835 Score: 103
Period size: 27 Copynumber: 3.7 Consensus size: 26
92147725 AGCGTCCTGA
* *
92147735 TGGCTATGCCACAATTATCTGATCCGG
1 TGGCTCTGCCAC-ATTATCTGATCTGG
* *
92147762 TGGCTCTGCCACATATATCTGTTCTAG
1 TGGCTCTGCCACAT-TATCTGATCTGG
*
92147789 TGGCTCTGCCATGATTATCTGTATCTGG
1 TGGCTCTGCCA-CATTATCTG-ATCTGG
* *
92147817 TGACTCTGTCACATTATCT
1 TGGCTCTGCCACATTATCT
92147836 ATTCTGGCAG
Statistics
Matches: 61, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
26 2 0.03
27 44 0.72
28 15 0.25
ACGTcount: A:0.19, C:0.25, G:0.20, T:0.37
Consensus pattern (26 bp):
TGGCTCTGCCACATTATCTGATCTGG
Found at i:92152285 original size:20 final size:20
Alignment explanation
Indices: 92152248--92152287 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
92152238 ATAAGTATGA
*
92152248 ATTTTAATATTTGATGATAG
1 ATTTTAATAGTTGATGATAG
* *
92152268 ATTTTGATAGTTGTTGATAG
1 ATTTTAATAGTTGATGATAG
92152288 TTAAACAAGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (20 bp):
ATTTTAATAGTTGATGATAG
Found at i:92154088 original size:12 final size:12
Alignment explanation
Indices: 92154071--92154095 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
92154061 GTTTGGCACT
92154071 GCCTAGCACACG
1 GCCTAGCACACG
92154083 GCCTAGCACACG
1 GCCTAGCACACG
92154095 G
1 G
92154096 TCTTGTGGGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.40, G:0.28, T:0.08
Consensus pattern (12 bp):
GCCTAGCACACG
Found at i:92157340 original size:27 final size:26
Alignment explanation
Indices: 92157311--92157729 Score: 416
Period size: 27 Copynumber: 15.7 Consensus size: 26
92157301 TTTACACTAA
*
92157311 AGGGTATTTCGGTAATTTTACAATATA
1 AGGGTATTTCGGTAATTTTACAA-ATG
*
92157338 AGGGTATTTCGATAA-TTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAAT-G
* * ** *
92157364 GGGGTGTTTTAGTAATTTTACAATTTG
1 AGGGTATTTCGGTAATTTTACAA-ATG
92157391 A-GGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAAT-G
*
92157417 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAAT-G
*
92157444 AGGGTATTTTGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAAT-G
* *
92157471 AGGGTGTTTTGGTAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAA-TG
* *
92157498 AGGGTGTTTCGATAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAAT-G
* * * * *
92157525 ATGGTATTTTGATAATTTCACAAATT
1 AGGGTATTTCGGTAATTTTACAAATG
*
92157551 AGGGGTATTTCGGTAATTTTATAAACTG
1 A-GGGTATTTCGGTAATTTTACAAA-TG
*
92157579 -GGGTATTTCGATAATTTTACAAACTG
1 AGGGTATTTCGGTAATTTTACAAA-TG
**
92157605 AGGGTATTTTAGTAA-TTT-CATAATCG
1 AGGGTATTTCGGTAATTTTACA-AAT-G
92157631 AGGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAAT-G
92157658 AGGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAAT-G
***
92157685 AGGGTATTTTAATAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAA-TG
* *
92157712 GGGGTATTTCTGTAATTT
1 AGGGTATTTCGGTAATTT
92157730 CTCTTTATTA
Statistics
Matches: 333, Mismatches: 44, Indels: 30
0.82 0.11 0.07
Matches are distributed among these distances:
25 6 0.02
26 82 0.25
27 239 0.72
28 6 0.02
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (26 bp):
AGGGTATTTCGGTAATTTTACAAATG
Found at i:92157468 original size:54 final size:54
Alignment explanation
Indices: 92157311--92157729 Score: 462
Period size: 54 Copynumber: 7.8 Consensus size: 54
92157301 TTTACACTAA
* * *
92157311 AGGGTATTTCGGTAATTTTACAATAT-AAGGGTATTTCGATAA-TTTACAAATCG
1 AGGGTATTTCGATAATTTTACAA-ATCGAGGGTATTTCGGTAATTTTACAAATCG
* * * * *
92157364 GGGGTGTTT-TAGTAATTTTACAATTTGA-GGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGA-TAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCG
*
92157417 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCG
* * * * * *
92157471 AGGGTGTTTTGGTAATTTTACAAATTGAGGGTGTTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCG
* * * * *
92157525 ATGGTATTTTGATAATTTCACAAAT-TAGGGGTATTTCGGTAATTTTATAAA-CTG
1 AGGGTATTTCGATAATTTTACAAATCGA-GGGTATTTCGGTAATTTTACAAATC-G
**
92157579 -GGGTATTTCGATAATTTTACAAA-CTGAGGGTATTTTAGTAA-TTT-CATAATCG
1 AGGGTATTTCGATAATTTTACAAATC-GAGGGTATTTCGGTAATTTTACA-AATCG
*
92157631 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCG
** * * *
92157685 AGGGTATTTTAATAATTTTACAAATTGGGGGTATTTCTGTAATTT
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCGGTAATTT
92157730 CTCTTTATTA
Statistics
Matches: 307, Mismatches: 44, Indels: 29
0.81 0.12 0.08
Matches are distributed among these distances:
51 1 0.00
52 19 0.06
53 122 0.40
54 163 0.53
55 2 0.01
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (54 bp):
AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCG
Found at i:92161360 original size:18 final size:18
Alignment explanation
Indices: 92161337--92161374 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
92161327 GGACACTAAG
92161337 AGCTATTATTAGTGATAA
1 AGCTATTATTAGTGATAA
92161355 AGCTATTATTAGTGATAA
1 AGCTATTATTAGTGATAA
92161373 AG
1 AG
92161375 GTTCTCACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.39, C:0.05, G:0.18, T:0.37
Consensus pattern (18 bp):
AGCTATTATTAGTGATAA
Found at i:92167476 original size:14 final size:14
Alignment explanation
Indices: 92167457--92167486 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
92167447 TTCCCTCAAG
92167457 ATAACATTTTTTCA
1 ATAACATTTTTTCA
92167471 ATAACATTTTTTCA
1 ATAACATTTTTTCA
92167485 AT
1 AT
92167487 TTAGCCCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50
Consensus pattern (14 bp):
ATAACATTTTTTCA
Found at i:92170746 original size:117 final size:117
Alignment explanation
Indices: 92170535--92170768 Score: 387
Period size: 117 Copynumber: 2.0 Consensus size: 117
92170525 CCCGTGTGGT
* * * * *
92170535 CTAGGGACACACATATGTGGTCAGGCCATGTACTGCACATGCCCGTATCCTTATCCCGTGTAACT
1 CTAGAGACACACACATGTGGTCAGGCCATGTACTACACATGCCCGTATCCCTAACCCGTGTAACT
92170600 CTCTGACTTTTAAAGCATGAAGAAATTGAAGTCACACGGCCAAGTCACACGC
66 CTCTGACTTTTAAAGCATGAAGAAATTGAAGTCACACGGCCAAGTCACACGC
* * *
92170652 CTAGAGACACGCACATGTGGTCAGGCCGTGTACTACACATGCCCGTGTCCCTAACCCGTGTAACT
1 CTAGAGACACACACATGTGGTCAGGCCATGTACTACACATGCCCGTATCCCTAACCCGTGTAACT
*
92170717 CTCTGACTTTTAATGCATGAAGAAATTGAAGTCACACGGCCAAGTCACACGC
66 CTCTGACTTTTAAAGCATGAAGAAATTGAAGTCACACGGCCAAGTCACACGC
92170769 TCGTGTGCTA
Statistics
Matches: 108, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
117 108 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (117 bp):
CTAGAGACACACACATGTGGTCAGGCCATGTACTACACATGCCCGTATCCCTAACCCGTGTAACT
CTCTGACTTTTAAAGCATGAAGAAATTGAAGTCACACGGCCAAGTCACACGC
Found at i:92173376 original size:7 final size:7
Alignment explanation
Indices: 92173364--92173404 Score: 82
Period size: 7 Copynumber: 5.9 Consensus size: 7
92173354 AAAAATACTC
92173364 AATCTCT
1 AATCTCT
92173371 AATCTCT
1 AATCTCT
92173378 AATCTCT
1 AATCTCT
92173385 AATCTCT
1 AATCTCT
92173392 AATCTCT
1 AATCTCT
92173399 AATCTC
1 AATCTC
92173405 ATCAACAAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 34 1.00
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.41
Consensus pattern (7 bp):
AATCTCT
Found at i:92183724 original size:878 final size:878
Alignment explanation
Indices: 92182030--92183757 Score: 2992
Period size: 878 Copynumber: 2.0 Consensus size: 878
92182020 CATGAAGATA
* * *
92182030 CTTTCAAAAATACTTTGTCACTGATTTGAAATTTAACGTCTTTGCGTTTCAAATCAGCATGCGAT
1 CTTTCAAAAATACTTTGTCACCGATTTGAAATTTAACGTCTTTGCATTTCAAATCAGCATACGAT
92182095 TTCTGTCGATCTGAAGCTACTTTCAAATTGTCGTGAATTACTTTCACCTTATCCTCACTCTCTCT
66 TTCTGTCGATCTGAAGCTACTTTCAAATTGTCGTGAATTACTTTCACCTTATCCTCACTCTCTCT
*
92182160 AATCAAATCAAGCCCGTGAATCTTTTTCTCACTAAGCTCAGTCCAGTATAACAGAGTTTGACATT
131 AATCAAATCAAGCCCATGAATCTTTTTCTCACTAAGCTCAGTCCAGTATAACAGAGTTTGACATT
92182225 TTCGACCATACAAAGCTTCATATGGTGCCATCTTTATGCTCGATTGAAAACTGTTGTTATACGCG
196 TTCGACCATACAAAGCTTCATATGGTGCCATCTTTATGCTCGATTGAAAACTGTTGTTATACGCG
*
92182290 AATTCAACTAATAGCAAATATTTCTTCTAGTTTCTTTTAAATTCTAAAACACAATAACGAAGCAT
261 AATTCAACTAATAGCAAATATTTCTTCTAGTTTCCTTTAAATTCTAAAACACAATAACGAAGCAT
*
92182355 ATCTTCAAGAATCTAAATTACTCTTCCAGATTAAACATCGGTTTGCGGATGAAATGCGATACTAA
326 ATCTTCAAGAATCTAAATTACTCTTCCAGACTAAACATCGGTTTGCGGATGAAATGCGATACTAA
* * *
92182420 ATTTCAACCGCGTACCCAAAGCTTCTTGCAGTTTCTTCCAAAATCGTGACGTAAACCTCGGATCT
391 ATTTCAACCGCGTACCCAAAGCTTCTTGCAATTCCTTCCAAAATCATGACGTAAACCTCGGATCT
*
92182485 CTATCCGAAATAATCGAAACTAGCACCCGTGCAATCTAATGATCTCAGTAATATACAACTCTGCT
456 CTATCCGAAATAATCGAAACTAGCACCCGTGCAATCTAATGATCTCAGAAATATACAACTCTGCT
* *
92182550 AATCTATCAAACGCATAGTCTATACGTACCAGAATGAAATGTGTAGACTTTTTCAGTCGATCAAC
521 AATCTATCAAACGCATAGTCTATACGTACCAGAATGAAATATGCAGACTTTTTCAGTCGATCAAC
* * * *
92182615 AACAACCCAAATAGCATGTTTCTTTTCGAAGACAGAGGCAAACCTGATACAAAATCCATCGTGAC
586 AACAACCCAAATAGCATCTTTCTTTTCGAAGACAGAGACAAACCCGATACAAAATCCATCATGAC
92182680 TCTATCCCATTTCCACTCTGGTACCATTACTAGTTGTAACAATCCTGATGGCACCTAATGTTCAG
651 TCTATCCCATTTCCACTCTGGTACCATTACTAGTTGTAACAATCCTGATGGCACCTAATGTTCAG
* *
92182745 CTTTAACTTGCTGACAAACCAAACATCTCGACACAAACTTAGAAATGTCTTGTTTCATGCCCGAC
716 CTTTAACTTGCTGACAAACCAAACATCTCAACACAAACTTAGAAATGTCTCGTTTCATGCCCGAC
92182810 CACCAGTATAATTACTTCAAATCATTATACATTTTTGTCCTCCCCGAATGAACAGATAAACAACC
781 CACCAGTATAATTACTTCAAATCATTATACATTTTTGTCCTCCCCGAATGAACAGATAAACAACC
92182875 ACTGTTACAACCGATTTGAAATTTAATGTTTAG
846 ACTGTTACAACCGATTTGAAATTTAATGTTTAG
*
92182908 CTTTCAAAAATACTTTGTCACCGATTTGAAATTTAATGTCTTTGCATTTCAAATCCA-CATACGA
1 CTTTCAAAAATACTTTGTCACCGATTTGAAATTTAACGTCTTTGCATTTCAAAT-CAGCATACGA
*
92182972 TTTCTGTCGATCTGAAGCTACTTTCAAATTGTCGTGAATTACTTTCACCTTATTCTCACTCTCTC
65 TTTCTGTCGATCTGAAGCTACTTTCAAATTGTCGTGAATTACTTTCACCTTATCCTCACTCTCTC
*
92183037 TAATCAAATCAAGCCTATGAATCTTTTTCTCACTAAGCTCAGTCCAGTATAACAGAGTTTGACAT
130 TAATCAAATCAAGCCCATGAATCTTTTTCTCACTAAGCTCAGTCCAGTATAACAGAGTTTGACAT
* * *
92183102 TTTCGACCATACAAAGCTTCATATGTTGCCATCTTTATGCTTGATTGAAAATTGTTGTTATACGC
195 TTTCGACCATACAAAGCTTCATATGGTGCCATCTTTATGCTCGATTGAAAACTGTTGTTATACGC
* * *
92183167 GAATTCAACTAATGGCAAATATTTCTTCTAGTTTCCTTTAAATTCTAAAACATAGTAACGAAGCA
260 GAATTCAACTAATAGCAAATATTTCTTCTAGTTTCCTTTAAATTCTAAAACACAATAACGAAGCA
* * ** * *
92183232 TATCTTCAAGAATCTAAATTACTCTTTCAGACTGAATGTTGGTTTGCGGATGAAATGCGGTACTA
325 TATCTTCAAGAATCTAAATTACTCTTCCAGACTAAACATCGGTTTGCGGATGAAATGCGATACTA
* * * *
92183297 AATTTCAACCGCGTACCCAAAGCTTCTTGCAATTCCTTCTAAAATTATGATGTAAACTTCGGATC
390 AATTTCAACCGCGTACCCAAAGCTTCTTGCAATTCCTTCCAAAATCATGACGTAAACCTCGGATC
* *
92183362 TCTATCCGAAATAATCGAAACTGGCACCCGTGCAATCTAATGATCTTAGAAATATACAACTCTGC
455 TCTATCCGAAATAATCGAAACTAGCACCCGTGCAATCTAATGATCTCAGAAATATACAACTCTGC
* *
92183427 TAATCTATCAAGCGTATAGTCTATACGTACCAGAATGAAATATGCAGACTTTGTT-AGTCGATCA
520 TAATCTATCAAACGCATAGTCTATACGTACCAGAATGAAATATGCAGACTTT-TTCAGTCGATCA
* *
92183491 ACGACAACCCAAATAGCATCTTTCTTTTTGAAGACAGAGACAAACCCGATACAAAATCCATCATG
584 ACAACAACCCAAATAGCATCTTTCTTTTCGAAGACAGAGACAAACCCGATACAAAATCCATCATG
* *
92183556 ACTCTATCCCATTTCCACTCTGGTATCATTACTGGTTGTAACAATCCTGATGGCACCTAATGTTC
649 ACTCTATCCCATTTCCACTCTGGTACCATTACTAGTTGTAACAATCCTGATGGCACCTAATGTTC
92183621 AGCTTTAACTTGCTGACAAACCAAACATCTCAACACAAACTTAGAAATGTCTCGTTTCATGCCCG
714 AGCTTTAACTTGCTGACAAACCAAACATCTCAACACAAACTTAGAAATGTCTCGTTTCATGCCCG
* **
92183686 ACCACCAGTATAATTATTTCAAATCATTATACATTTTTGTCCTCCCCGAATGAATGGATAAACAA
779 ACCACCAGTATAATTACTTCAAATCATTATACATTTTTGTCCTCCCCGAATGAACAGATAAACAA
92183751 CCACTGT
844 CCACTGT
92183758 GTGCTTCGTG
Statistics
Matches: 800, Mismatches: 48, Indels: 4
0.94 0.06 0.00
Matches are distributed among these distances:
878 796 1.00
879 4 0.00
ACGTcount: A:0.32, C:0.23, G:0.13, T:0.32
Consensus pattern (878 bp):
CTTTCAAAAATACTTTGTCACCGATTTGAAATTTAACGTCTTTGCATTTCAAATCAGCATACGAT
TTCTGTCGATCTGAAGCTACTTTCAAATTGTCGTGAATTACTTTCACCTTATCCTCACTCTCTCT
AATCAAATCAAGCCCATGAATCTTTTTCTCACTAAGCTCAGTCCAGTATAACAGAGTTTGACATT
TTCGACCATACAAAGCTTCATATGGTGCCATCTTTATGCTCGATTGAAAACTGTTGTTATACGCG
AATTCAACTAATAGCAAATATTTCTTCTAGTTTCCTTTAAATTCTAAAACACAATAACGAAGCAT
ATCTTCAAGAATCTAAATTACTCTTCCAGACTAAACATCGGTTTGCGGATGAAATGCGATACTAA
ATTTCAACCGCGTACCCAAAGCTTCTTGCAATTCCTTCCAAAATCATGACGTAAACCTCGGATCT
CTATCCGAAATAATCGAAACTAGCACCCGTGCAATCTAATGATCTCAGAAATATACAACTCTGCT
AATCTATCAAACGCATAGTCTATACGTACCAGAATGAAATATGCAGACTTTTTCAGTCGATCAAC
AACAACCCAAATAGCATCTTTCTTTTCGAAGACAGAGACAAACCCGATACAAAATCCATCATGAC
TCTATCCCATTTCCACTCTGGTACCATTACTAGTTGTAACAATCCTGATGGCACCTAATGTTCAG
CTTTAACTTGCTGACAAACCAAACATCTCAACACAAACTTAGAAATGTCTCGTTTCATGCCCGAC
CACCAGTATAATTACTTCAAATCATTATACATTTTTGTCCTCCCCGAATGAACAGATAAACAACC
ACTGTTACAACCGATTTGAAATTTAATGTTTAG
Found at i:92188241 original size:28 final size:29
Alignment explanation
Indices: 92188210--92188275 Score: 82
Period size: 28 Copynumber: 2.3 Consensus size: 29
92188200 TATGAAACTA
* * * *
92188210 ATTGAGCCTAG-TGGGCTATGTGAATGTG
1 ATTGGGCCTAGATGGGCCATATGAATGAG
92188238 ATTGGGCCT-GATGGGCCATATGAATGAG
1 ATTGGGCCTAGATGGGCCATATGAATGAG
92188266 ATTGGGCCTA
1 ATTGGGCCTA
92188276 AAGGGGCTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
27 1 0.03
28 31 0.97
ACGTcount: A:0.23, C:0.14, G:0.35, T:0.29
Consensus pattern (29 bp):
ATTGGGCCTAGATGGGCCATATGAATGAG
Found at i:92188291 original size:29 final size:28
Alignment explanation
Indices: 92188230--92188291 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
92188220 GTGGGCTATG
* * * *
92188230 TGAATGTGATTGGGCCTGATGGGCCATA
1 TGAATGAGATTGGGCCTAAGGGGCCAAA
*
92188258 TGAATGAGATTGGGCCTAAAGGGGCTAAA
1 TGAATGAGATTGGGCCT-AAGGGGCCAAA
92188287 TGAAT
1 TGAAT
92188292 AAGTATGGAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
28 16 0.57
29 12 0.43
ACGTcount: A:0.29, C:0.11, G:0.34, T:0.26
Consensus pattern (28 bp):
TGAATGAGATTGGGCCTAAGGGGCCAAA
Found at i:92188919 original size:23 final size:23
Alignment explanation
Indices: 92188886--92188930 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
92188876 AATCCCCACA
*
92188886 GGAGTGTAGGGTTGGATGGGTAC
1 GGAGTGCAGGGTTGGATGGGTAC
*
92188909 GGAGTGCAGGGTTGGATTGGTA
1 GGAGTGCAGGGTTGGATGGGTA
92188931 TTTGTGCATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.18, C:0.04, G:0.51, T:0.27
Consensus pattern (23 bp):
GGAGTGCAGGGTTGGATGGGTAC
Found at i:92204306 original size:22 final size:22
Alignment explanation
Indices: 92204235--92204353 Score: 59
Period size: 22 Copynumber: 5.1 Consensus size: 22
92204225 GTATATATGA
92204235 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
92204257 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
92204282 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* *
92204304 GATGAATGTG-AGCAT-G-CATATGTGT
1 GAT-AA-G-GCCGAATGGCCA-A--TGT
92204329 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
92204351 GAT
1 GAT
92204354 GAATCTATTC
Statistics
Matches: 71, Mismatches: 10, Indels: 32
0.63 0.09 0.28
Matches are distributed among these distances:
22 20 0.28
23 17 0.24
24 17 0.24
25 17 0.24
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:92204377 original size:47 final size:47
Alignment explanation
Indices: 92204206--92204357 Score: 250
Period size: 47 Copynumber: 3.2 Consensus size: 47
92204196 TTAGGATTTT
** * *
92204206 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
92204253 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
92204300 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
92204347 ATGTGATGAAT
1 ATGTGATGAAT
92204358 CTATTCCTAT
Statistics
Matches: 99, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 99 1.00
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:92205623 original size:29 final size:29
Alignment explanation
Indices: 92205586--92205730 Score: 91
Period size: 29 Copynumber: 4.8 Consensus size: 29
92205576 TCGAATATCA
*
92205586 AATAGTGCGATACAATCACCAATAACATAT
1 AATA-TGCGATAAAATCACCAATAACATAT
* **
92205616 AATATGCGATAAAATCGCCAATCCTCTGAATAAT
1 AATATGCGATAAAATCACCAAT-AAC---AT-AT
* *
92205650 CAATAATGC-AGAAAATCTACCGAATATC--A-
1 -AAT-ATGCGATAAAATC-ACC-AATAACATAT
*
92205679 AATAGTGCGATACAATCACCAATAACATAT
1 AATA-TGCGATAAAATCACCAATAACATAT
*
92205709 AATATGCGATAAAATCGCCAAT
1 AATATGCGATAAAATCACCAAT
92205731 CCTCTCGGTA
Statistics
Matches: 89, Mismatches: 12, Indels: 29
0.68 0.09 0.22
Matches are distributed among these distances:
27 6 0.07
28 9 0.10
29 39 0.44
30 10 0.11
33 2 0.02
34 2 0.02
35 10 0.11
36 8 0.09
37 3 0.03
ACGTcount: A:0.46, C:0.20, G:0.11, T:0.23
Consensus pattern (29 bp):
AATATGCGATAAAATCACCAATAACATAT
Found at i:92205710 original size:93 final size:93
Alignment explanation
Indices: 92205551--92205735 Score: 343
Period size: 93 Copynumber: 2.0 Consensus size: 93
92205541 AAAACCACCA
**
92205551 AATAATCAATAACGCAGAAAATCTGTCGAATATCAAATAGTGCGATACAATCACCAATAACATAT
1 AATAATCAATAACGCAGAAAATCTACCGAATATCAAATAGTGCGATACAATCACCAATAACATAT
92205616 AATATGCGATAAAATCGCCAATCCTCTG
66 AATATGCGATAAAATCGCCAATCCTCTG
*
92205644 AATAATCAATAATGCAGAAAATCTACCGAATATCAAATAGTGCGATACAATCACCAATAACATAT
1 AATAATCAATAACGCAGAAAATCTACCGAATATCAAATAGTGCGATACAATCACCAATAACATAT
92205709 AATATGCGATAAAATCGCCAATCCTCT
66 AATATGCGATAAAATCGCCAATCCTCT
92205736 CGGTACTCTA
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 89 1.00
ACGTcount: A:0.45, C:0.21, G:0.11, T:0.24
Consensus pattern (93 bp):
AATAATCAATAACGCAGAAAATCTACCGAATATCAAATAGTGCGATACAATCACCAATAACATAT
AATATGCGATAAAATCGCCAATCCTCTG
Found at i:92207444 original size:17 final size:17
Alignment explanation
Indices: 92207422--92207455 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
92207412 AAAGTATGGT
92207422 AATTATATGTCATTGAA
1 AATTATATGTCATTGAA
92207439 AATTATATGTCATTGAA
1 AATTATATGTCATTGAA
92207456 TGAAATATAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.06, G:0.12, T:0.41
Consensus pattern (17 bp):
AATTATATGTCATTGAA
Found at i:92210911 original size:20 final size:18
Alignment explanation
Indices: 92210881--92210925 Score: 63
Period size: 20 Copynumber: 2.4 Consensus size: 18
92210871 TACTTTAGTC
*
92210881 ATTTTTATTTTTATTTTA
1 ATTTTTATTTTTAATTTA
92210899 ATATTTTAGTTTTTAATTTA
1 AT-TTTTA-TTTTTAATTTA
92210919 ATTTTTA
1 ATTTTTA
92210926 CATTCTAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 2 0.08
19 10 0.42
20 12 0.50
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (18 bp):
ATTTTTATTTTTAATTTA
Found at i:92211647 original size:26 final size:26
Alignment explanation
Indices: 92211618--92211673 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
92211608 TGATAAAAAT
*
92211618 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATATTCCA
*
92211644 TGATAATGGATTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATATTCCA
92211670 TGAT
1 TGAT
92211674 GGGCATTTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.34, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATATTCCA
Found at i:92225362 original size:36 final size:36
Alignment explanation
Indices: 92225315--92225390 Score: 134
Period size: 36 Copynumber: 2.1 Consensus size: 36
92225305 CTCTATATTT
*
92225315 TGGTATGTTTCGAATGGATTAGCTCTTATGAGCGTC
1 TGGTATGTTTCGAATGGATTAGCTCTTATGAGCATC
*
92225351 TGGTATGTTTCGGATGGATTAGCTCTTATGAGCATC
1 TGGTATGTTTCGAATGGATTAGCTCTTATGAGCATC
92225387 TGGT
1 TGGT
92225391 GCATTTTGGT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.18, C:0.13, G:0.29, T:0.39
Consensus pattern (36 bp):
TGGTATGTTTCGAATGGATTAGCTCTTATGAGCATC
Found at i:92231340 original size:20 final size:19
Alignment explanation
Indices: 92231293--92231340 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
92231283 TATGGGACAA
* *
92231293 ATTTAAAAATAATTTTAAT
1 ATTTAAAAGTAATTTAAAT
92231312 ATATT-AAAGTAAATTTAAAT
1 AT-TTAAAAGT-AATTTAAAT
92231332 ATTTAAAAG
1 ATTTAAAAG
92231341 AGTTATATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
19 8 0.33
20 16 0.67
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (19 bp):
ATTTAAAAGTAATTTAAAT
Found at i:92239474 original size:26 final size:26
Alignment explanation
Indices: 92239445--92239498 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
92239435 TTCCAATTCA
92239445 TTTGACATTTGACATTGCATCTTTCT
1 TTTGACATTTGACATTGCATCTTTCT
92239471 TTTGACATTTGACATTGCATCTTTCT
1 TTTGACATTTGACATTGCATCTTTCT
92239497 TT
1 TT
92239499 CTCAGAGACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.19, C:0.19, G:0.11, T:0.52
Consensus pattern (26 bp):
TTTGACATTTGACATTGCATCTTTCT
Found at i:92243250 original size:27 final size:27
Alignment explanation
Indices: 92243217--92243696 Score: 852
Period size: 27 Copynumber: 17.6 Consensus size: 27
92243207 TAAATTGTGC
*
92243217 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
92243244 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
92243271 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
92243298 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
92243325 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
92243352 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
92243379 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
92243407 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
92243434 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
92243461 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
92243489 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
92243517 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
92243545 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
92243573 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
92243600 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
92243627 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
92243655 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
92243682 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
92243697 GACTTAATAT
Statistics
Matches: 444, Mismatches: 6, Indels: 6
0.97 0.01 0.01
Matches are distributed among these distances:
27 281 0.63
28 163 0.37
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:92243457 original size:82 final size:82
Alignment explanation
Indices: 92243217--92243696 Score: 874
Period size: 82 Copynumber: 5.9 Consensus size: 82
92243207 TAAATTGTGC
*
92243217 AGCACTAAGTGTGCGA-ATTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
92243281 GTGCGAGTTGACTATGT
66 GTGCGAGTTGACTATGT
92243298 AGCACTAAGTGTGCGAG-TTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
92243362 GTGCGAGTTGACTATGT
66 GTGCGAGTTGACTATGT
*
92243379 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
92243444 GTGCGAGTTGACTATGT
66 GTGCGAGTTGACTATGT
92243461 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAG
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAG-TTGACTATGTAGCACTAAG
92243526 TGTGCGAGTTTGACTATGT
65 TGTGCGAG-TTGACTATGT
92243545 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
92243610 GTGCGAGTTGACTATGT
66 GTGCGAGTTGACTATGT
* * * *
92243627 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
92243692 GTGCG
66 GTGCG
92243697 GACTTAATAT
Statistics
Matches: 389, Mismatches: 6, Indels: 7
0.97 0.01 0.02
Matches are distributed among these distances:
81 97 0.25
82 183 0.47
83 54 0.14
84 55 0.14
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (82 bp):
AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
GTGCGAGTTGACTATGT
Found at i:92261517 original size:16 final size:16
Alignment explanation
Indices: 92261467--92261509 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
92261457 GTAGCCAAAC
*
92261467 TTTCAGCTTTTCGGTA
1 TTTCAGCTTTTCGGCA
92261483 TTTCAGCTTTTCGGCA
1 TTTCAGCTTTTCGGCA
*
92261499 TTTTAGCTTTT
1 TTTCAGCTTTT
92261510 TGGGATTTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.12, C:0.19, G:0.16, T:0.53
Consensus pattern (16 bp):
TTTCAGCTTTTCGGCA
Found at i:92264224 original size:30 final size:30
Alignment explanation
Indices: 92264190--92264249 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
92264180 ATTTAATACG
92264190 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
92264220 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
92264250 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:92266887 original size:13 final size:13
Alignment explanation
Indices: 92266869--92266896 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
92266859 TCTAAGAGCA
92266869 CCCAAGGTCTCAT
1 CCCAAGGTCTCAT
92266882 CCCAAGGTCTCAT
1 CCCAAGGTCTCAT
92266895 CC
1 CC
92266897 ATTAATTGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.43, G:0.14, T:0.21
Consensus pattern (13 bp):
CCCAAGGTCTCAT
Found at i:92270977 original size:16 final size:16
Alignment explanation
Indices: 92270956--92270988 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
92270946 CCTCGACAAG
92270956 TAACAAGCATTCATCA
1 TAACAAGCATTCATCA
92270972 TAACAAGCATTCATCA
1 TAACAAGCATTCATCA
92270988 T
1 T
92270989 TCACCATACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.42, C:0.24, G:0.06, T:0.27
Consensus pattern (16 bp):
TAACAAGCATTCATCA
Found at i:92271739 original size:28 final size:28
Alignment explanation
Indices: 92271682--92271752 Score: 81
Period size: 28 Copynumber: 2.5 Consensus size: 28
92271672 CCTGTATATC
* *
92271682 GCCCATTGGGCCCAATCTCTTTCAAATG
1 GCCCATTAGGCCCAATCACTTTCAAATG
**
92271710 GCCCATTAGGCCCAATCACATTT-AGGTG
1 GCCCATTAGGCCCAATCAC-TTTCAAATG
*
92271738 GCCCACTAGGCCCAA
1 GCCCATTAGGCCCAA
92271753 ATTATATTCA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 34 0.92
29 3 0.08
ACGTcount: A:0.24, C:0.34, G:0.20, T:0.23
Consensus pattern (28 bp):
GCCCATTAGGCCCAATCACTTTCAAATG
Found at i:92273844 original size:27 final size:27
Alignment explanation
Indices: 92273811--92274290 Score: 852
Period size: 27 Copynumber: 17.6 Consensus size: 27
92273801 TAAATTGTGC
*
92273811 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
92273838 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
92273865 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
92273892 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
92273919 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
92273946 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
92273973 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
92274001 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
92274028 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
92274055 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
92274083 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
92274111 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
92274139 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
92274167 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
92274194 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
92274221 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
92274249 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
92274276 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
92274291 GACTTAATAT
Statistics
Matches: 444, Mismatches: 6, Indels: 6
0.97 0.01 0.01
Matches are distributed among these distances:
27 281 0.63
28 163 0.37
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:92274051 original size:82 final size:82
Alignment explanation
Indices: 92273811--92274290 Score: 874
Period size: 82 Copynumber: 5.9 Consensus size: 82
92273801 TAAATTGTGC
*
92273811 AGCACTAAGTGTGCGA-ATTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
92273875 GTGCGAGTTGACTATGT
66 GTGCGAGTTGACTATGT
92273892 AGCACTAAGTGTGCGAG-TTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
92273956 GTGCGAGTTGACTATGT
66 GTGCGAGTTGACTATGT
*
92273973 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
92274038 GTGCGAGTTGACTATGT
66 GTGCGAGTTGACTATGT
92274055 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAG
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAG-TTGACTATGTAGCACTAAG
92274120 TGTGCGAGTTTGACTATGT
65 TGTGCGAG-TTGACTATGT
92274139 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
92274204 GTGCGAGTTGACTATGT
66 GTGCGAGTTGACTATGT
* * * *
92274221 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
92274286 GTGCG
66 GTGCG
92274291 GACTTAATAT
Statistics
Matches: 389, Mismatches: 6, Indels: 7
0.97 0.01 0.02
Matches are distributed among these distances:
81 97 0.25
82 183 0.47
83 54 0.14
84 55 0.14
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (82 bp):
AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
GTGCGAGTTGACTATGT
Found at i:92285241 original size:344 final size:344
Alignment explanation
Indices: 92284614--92285301 Score: 1306
Period size: 344 Copynumber: 2.0 Consensus size: 344
92284604 CGGCCAACTA
* * *
92284614 AGATCCAGAGTACTTACCAAAGTCTCTCCCCTGAAGAGCAAATTGGCAGAAATCCAAAGACTGAG
1 AGATCCAGACTACTTACCAAAGTCTCTCCCCTGAAGAGCAAATCGACAGAAATCCAAAGACTGAG
92284679 ATTTGATACCTATTCCTACCCAAGACCGATTAGAAGAAGTGAGGGACAATAATTGATACTTAGCA
66 ATTTGATACCTATTCCTACCCAAGACCGATTAGAAGAAGTGAGGGACAATAATTGATACTTAGCA
92284744 AAACAAACCGATTGGAAGCGCGGACACTTACACTAGAATCGACTGAGTGGAAAGGGTAGTGGCAG
131 AAACAAACCGATTGGAAGCGCGGACACTTACACTAGAATCGACTGAGTGGAAAGGGTAGTGGCAG
92284809 CACTAAGGGTATTCGGCCAAAGAGGTGTTTGGCCCTTGAGATTTGAATGGCAAACAAATGATTAT
196 CACTAAGGGTATTCGGCCAAAGAGGTGTTTGGCCCTTGAGATTTGAATGGCAAACAAATGATTAT
92284874 TCGGCACCAAGGGAAAAAGGAAGAAGAAGTTGGCTAAACCAAAAGTGAAACAAAGAATATTGTGT
261 TCGGCACCAAGGGAAAAAGGAAGAAGAAGTTGGCTAAACCAAAAGTGAAACAAAGAATATTGTGT
92284939 AGAGGAAGGAGGGGAAATT
326 AGAGGAAGGAGGGGAAATT
* * *
92284958 AGATCCAGACTACTTACCAAAGTCTCTCCCTTGAGGAGCCAATCGACA-AAGATCCAAAGACTGA
1 AGATCCAGACTACTTACCAAAGTCTCTCCCCTGAAGAGCAAATCGACAGAA-ATCCAAAGACTGA
92285022 GATTTGATACCTATTCCTACCCAAGACCGATTAGAAGAAGTGAGGGACAATAATTGATACTTAGC
65 GATTTGATACCTATTCCTACCCAAGACCGATTAGAAGAAGTGAGGGACAATAATTGATACTTAGC
92285087 AAAACAAACCGATTGGAAGCGCGGACACTTACACTAGAATCGACTGAGTGGAAAGGGTAGTGGCA
130 AAAACAAACCGATTGGAAGCGCGGACACTTACACTAGAATCGACTGAGTGGAAAGGGTAGTGGCA
92285152 GCACTAAGGGTATTCGGCCAAAGAGGTGTTTGGCCCTTGAGATTTGAATGGCAAACAAATGATTA
195 GCACTAAGGGTATTCGGCCAAAGAGGTGTTTGGCCCTTGAGATTTGAATGGCAAACAAATGATTA
92285217 TTCGGCACCAAGGGAAAAAGGAAGAAGAAGTTGGCTAAACCAAAAGTGAAACAAAGAATATTGTG
260 TTCGGCACCAAGGGAAAAAGGAAGAAGAAGTTGGCTAAACCAAAAGTGAAACAAAGAATATTGTG
92285282 TAGAGGAAGGAGGGGAAATT
325 TAGAGGAAGGAGGGGAAATT
92285302 GGCACAGAGA
Statistics
Matches: 337, Mismatches: 6, Indels: 2
0.98 0.02 0.01
Matches are distributed among these distances:
343 2 0.01
344 335 0.99
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.20
Consensus pattern (344 bp):
AGATCCAGACTACTTACCAAAGTCTCTCCCCTGAAGAGCAAATCGACAGAAATCCAAAGACTGAG
ATTTGATACCTATTCCTACCCAAGACCGATTAGAAGAAGTGAGGGACAATAATTGATACTTAGCA
AAACAAACCGATTGGAAGCGCGGACACTTACACTAGAATCGACTGAGTGGAAAGGGTAGTGGCAG
CACTAAGGGTATTCGGCCAAAGAGGTGTTTGGCCCTTGAGATTTGAATGGCAAACAAATGATTAT
TCGGCACCAAGGGAAAAAGGAAGAAGAAGTTGGCTAAACCAAAAGTGAAACAAAGAATATTGTGT
AGAGGAAGGAGGGGAAATT
Found at i:92285897 original size:16 final size:16
Alignment explanation
Indices: 92285867--92285904 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
92285857 AAAAGAAAAA
*
92285867 TTTGAGATTTTGGGATT
1 TTTG-GATTTCGGGATT
92285884 TTTGGATTTCGGGATT
1 TTTGGATTTCGGGATT
92285900 TTTGG
1 TTTGG
92285905 GGCGTTACAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 16 0.80
17 4 0.20
ACGTcount: A:0.13, C:0.03, G:0.32, T:0.53
Consensus pattern (16 bp):
TTTGGATTTCGGGATT
Found at i:92295015 original size:17 final size:17
Alignment explanation
Indices: 92294977--92295009 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
92294967 TTGAAGGGAT
*
92294977 AAAAATAAATAAATAAC
1 AAAAAGAAATAAATAAC
92294994 AAAAAGAAATAAATAA
1 AAAAAGAAATAAATAA
92295010 AGAAAAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.79, C:0.03, G:0.03, T:0.15
Consensus pattern (17 bp):
AAAAAGAAATAAATAAC
Found at i:92297122 original size:106 final size:106
Alignment explanation
Indices: 92296923--92297115 Score: 257
Period size: 106 Copynumber: 1.8 Consensus size: 106
92296913 CAATATAAAC
* * * * * *
92296923 TACATGCTTTAACATTTCATGCAACTATAATATAGAAAATGATGAATAATAACATAAATTATATA
1 TACATGCATTAACATTTCATGCAAATATAACATAGAAAATAATGAATAACAACATAAATTACATA
*
92296988 ATATACATTAACCTTTCATGCAGATATAAATAACATAAATA
66 ATATACATTAACATTTCATGCAGATATAAATAACATAAATA
*
92297029 TACATGCATTAATATTTCATGCAAAATATAACATAGAAAATAATGAATATAACAACATAAATTAC
1 TACATGCATTAACATTTCATGC-AAATATAACATAGAAAATAATG-A-ATAACAACATAAATTAC
*
92297094 AT-ATATA-A-TAATATTTCATGCA
63 ATAATATACATTAACATTTCATGCA
92297116 AGTATAACTT
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
106 32 0.43
107 20 0.27
108 6 0.08
109 17 0.23
ACGTcount: A:0.49, C:0.12, G:0.06, T:0.33
Consensus pattern (106 bp):
TACATGCATTAACATTTCATGCAAATATAACATAGAAAATAATGAATAACAACATAAATTACATA
ATATACATTAACATTTCATGCAGATATAAATAACATAAATA
Found at i:92297184 original size:18 final size:18
Alignment explanation
Indices: 92297161--92297195 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
92297151 ATGCGAATAT
*
92297161 ATAAAAACAATAAATAAC
1 ATAAAAACAACAAATAAC
*
92297179 ATAAAAATAACAAATAA
1 ATAAAAACAACAAATAA
92297196 TTTATGAGAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.74, C:0.09, G:0.00, T:0.17
Consensus pattern (18 bp):
ATAAAAACAACAAATAAC
Found at i:92297301 original size:15 final size:15
Alignment explanation
Indices: 92297281--92297312 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
92297271 GAACATATAT
92297281 AAAATATAAGTAAAA
1 AAAATATAAGTAAAA
*
92297296 AAAATATAATTAAAA
1 AAAATATAAGTAAAA
92297311 AA
1 AA
92297313 TATTGAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (15 bp):
AAAATATAAGTAAAA
Found at i:92297405 original size:20 final size:18
Alignment explanation
Indices: 92297363--92297424 Score: 65
Period size: 19 Copynumber: 3.4 Consensus size: 18
92297353 AATGATTAAT
92297363 ATATATATATAAAACATA
1 ATATATATATAAAACATA
* *
92297381 CTATATGATATAATAACTTA
1 ATATAT-ATATAA-AACATA
*
92297401 ATATATTTATAAAA-ATA
1 ATATATATATAAAACATA
92297418 ATA-ATAT
1 ATATATAT
92297425 GTTAAATAGG
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
16 3 0.08
17 5 0.14
18 7 0.19
19 11 0.31
20 10 0.28
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.39
Consensus pattern (18 bp):
ATATATATATAAAACATA
Found at i:92297571 original size:14 final size:14
Alignment explanation
Indices: 92297561--92297620 Score: 55
Period size: 12 Copynumber: 4.8 Consensus size: 14
92297551 ATAATAAATG
92297561 ATAATATATAATA-
1 ATAATATATAATAT
92297574 A-AATGA-AT-ATAT
1 ATAAT-ATATAATAT
92297586 ATAATA-A-AATAT
1 ATAATATATAATAT
92297598 ATAATATATAATA-
1 ATAATATATAATAT
92297611 A-AATATATAA
1 ATAATATATAA
92297621 ATAACATGAT
Statistics
Matches: 41, Mismatches: 0, Indels: 13
0.76 0.00 0.24
Matches are distributed among these distances:
11 3 0.07
12 27 0.66
13 7 0.17
14 4 0.10
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (14 bp):
ATAATATATAATAT
Found at i:92297579 original size:18 final size:18
Alignment explanation
Indices: 92297545--92297614 Score: 90
Period size: 18 Copynumber: 3.9 Consensus size: 18
92297535 TTATATGTAC
*
92297545 TAATAAATAAT-AAATGA
1 TAATATATAATAAAATGA
92297562 TAATATATAATAAAATGA
1 TAATATATAATAAAATGA
*
92297580 -ATATATATAATAAAATATA
1 TA-ATATATAATAAAAT-GA
92297599 TAATATATAATAAAAT
1 TAATATATAATAAAAT
92297615 ATATAAATAA
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
17 11 0.23
18 20 0.43
19 15 0.32
20 1 0.02
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (18 bp):
TAATATATAATAAAATGA
Found at i:92297606 original size:19 final size:19
Alignment explanation
Indices: 92297561--92297665 Score: 100
Period size: 18 Copynumber: 5.7 Consensus size: 19
92297551 ATAATAAATG
92297561 ATAATATATAATAAAATGA-
1 ATAATATATAATAAAAT-AT
92297580 AT-ATATATAATAAAATAT
1 ATAATATATAATAAAATAT
92297598 ATAATATATAATAAAATAT
1 ATAATATATAATAAAATAT
92297617 ATAA-ATA-ACATGATAAATAT
1 ATAATATATA-AT-A-AAATAT
*
92297637 -T-ACATA-AATAAAA-AT
1 ATAATATATAATAAAATAT
*
92297652 ATCATATATAATAA
1 ATAATATATAATAA
92297666 TTTTTACATG
Statistics
Matches: 76, Mismatches: 1, Indels: 19
0.79 0.01 0.20
Matches are distributed among these distances:
15 2 0.03
16 4 0.05
17 7 0.09
18 29 0.38
19 28 0.37
20 6 0.08
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.33
Consensus pattern (19 bp):
ATAATATATAATAAAATAT
Found at i:92297716 original size:18 final size:18
Alignment explanation
Indices: 92297689--92297731 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
92297679 AAATAATGTT
*
92297689 TATA-AAAATAATTAATA
1 TATATAAAATAATTAAAA
*
92297706 TATATAAAATATTTAAAA
1 TATATAAAATAATTAAAA
*
92297724 TAAATAAA
1 TATATAAA
92297732 TTGTATGTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 4 0.18
18 18 0.82
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (18 bp):
TATATAAAATAATTAAAA
Found at i:92299361 original size:44 final size:44
Alignment explanation
Indices: 92299271--92300244 Score: 1172
Period size: 44 Copynumber: 22.1 Consensus size: 44
92299261 CGAATGTCAG
* * *
92299271 ATCTGCAATCTTCGATCTGCTCC-CCGGCTAATACAGAGACGCCAA
1 ATCTGCTATCTTCGATCTGC-CCTCTGTC-AATACAGAGACGCCAA
* * *
92299316 ATCTG-TCATCTTTGATCTGCCCTTTGTCAATACAGAGACACCAA
1 ATCTGCT-ATCTTCGATCTGCCCTCTGTCAATACAGAGACGCCAA
** * *
92299360 ATCCACTATCTTCGATCTGCCCTCTGTCAATACAGATATGCCAA
1 ATCTGCTATCTTCGATCTGCCCTCTGTCAATACAGAGACGCCAA
* * ** * * *
92299404 ATTTG-TCATCTTTGATCTGCTTTCTGTCAATATAGAGATGCTAA
1 ATCTGCT-ATCTTCGATCTGCCCTCTGTCAATACAGAGACGCCAA
* **
92299448 ATCT-ATCATCTTTAATCTGCCCTCTGTCAATACAGAGACGCCAA
1 ATCTGCT-ATCTTCGATCTGCCCTCTGTCAATACAGAGACGCCAA
* * * *
92299492 ATCTGCTATCTTTGATCTGCTCC-CCGTCGATACAGAGATGCCAA
1 ATCTGCTATCTTCGATCTGC-CCTCTGTCAATACAGAGACGCCAA
* * *
92299536 ATTTGCTATCTTCGATCTGCTCTCTGTCAATACAGAGGCGCCAA
1 ATCTGCTATCTTCGATCTGCCCTCTGTCAATACAGAGACGCCAA
* * * *
92299580 ATCTGTTATCTTCGATTTGCCCTCTTATCAATACAGAGAGGCCAA
1 ATCTGCTATCTTCGATCTGCCCTC-TGTCAATACAGAGACGCCAA
* * *
92299625 ATCTG-TCATCTTTGATCTGCTCC-CTGTCGATACAGAAACGCCAA
1 ATCTGCT-ATCTTCGATCTGC-CCTCTGTCAATACAGAGACGCCAA
* * * *
92299669 ATCCGCTATCTTCGATCTGCTCTTTGTCAATACAGAGATGCCAA
1 ATCTGCTATCTTCGATCTGCCCTCTGTCAATACAGAGACGCCAA
*
92299713 ATATGCTATCTTCGATCTGCCCTCTGTCAATACAGAGACGCCAA
1 ATCTGCTATCTTCGATCTGCCCTCTGTCAATACAGAGACGCCAA
* * * *
92299757 ATCTACTATCTTCGATCTGCTCTTTGTCAATACAGAGATGCCAA
1 ATCTGCTATCTTCGATCTGCCCTCTGTCAATACAGAGACGCCAA
*
92299801 ATATGCTATCTTCGATCTGCCCTCTGTCAATACAGAGACGCCAA
1 ATCTGCTATCTTCGATCTGCCCTCTGTCAATACAGAGACGCCAA
* * * *
92299845 ATCTACTATCTTCGATCTGCTCTTTGTCAATACAGAGATGCCAA
1 ATCTGCTATCTTCGATCTGCCCTCTGTCAATACAGAGACGCCAA
*
92299889 ATATGCTATCTTCGATCTGCCCTCTGTCAATACAGAGACGCCAA
1 ATCTGCTATCTTCGATCTGCCCTCTGTCAATACAGAGACGCCAA
* * * *
92299933 ATCTACTATCTTCGATCTGCTCTTTGTCAATACAGAGATGCCAA
1 ATCTGCTATCTTCGATCTGCCCTCTGTCAATACAGAGACGCCAA
*
92299977 ATATGCTATCTTCGATCTGCCCTCTGTCAATACAGAGACGCCAA
1 ATCTGCTATCTTCGATCTGCCCTCTGTCAATACAGAGACGCCAA
* * *
92300021 ATCTACTATCTTCGATCTGCTCTTTGTCAATACAGAGACGCCAA
1 ATCTGCTATCTTCGATCTGCCCTCTGTCAATACAGAGACGCCAA
* * *
92300065 ATCTTCTATCTTCTATCTGCTCTCTGTCAATACAGAGACGCCAA
1 ATCTGCTATCTTCGATCTGCCCTCTGTCAATACAGAGACGCCAA
* * *
92300109 ATCTACTATCTTCGATCTGCTCTTTGTCAATACAGAGACGCCAA
1 ATCTGCTATCTTCGATCTGCCCTCTGTCAATACAGAGACGCCAA
* * *
92300153 ATCTTCTATCTTCTATCTGCTCTCTGTCAATACAGAGACGCCAA
1 ATCTGCTATCTTCGATCTGCCCTCTGTCAATACAGAGACGCCAA
* * * *
92300197 ATCTACTATCTTTGATCTGCTCC-CTGTCAATACAGAGACACAAA
1 ATCTGCTATCTTCGATCTGC-CCTCTGTCAATACAGAGACGCCAA
92300241 ATCT
1 ATCT
92300245 ACTTTCTAGA
Statistics
Matches: 800, Mismatches: 115, Indels: 29
0.85 0.12 0.03
Matches are distributed among these distances:
43 3 0.00
44 736 0.92
45 59 0.07
46 2 0.00
ACGTcount: A:0.27, C:0.28, G:0.14, T:0.31
Consensus pattern (44 bp):
ATCTGCTATCTTCGATCTGCCCTCTGTCAATACAGAGACGCCAA
Found at i:92299403 original size:88 final size:88
Alignment explanation
Indices: 92299271--92300234 Score: 1303
Period size: 88 Copynumber: 10.9 Consensus size: 88
92299261 CGAATGTCAG
* * * * *
92299271 ATCTGCAATCTTCGATCTGCTCC-CCGGCTAATACAGAGACGCCAAATCT-GTCATCTTTGATCT
1 ATCTGCTATCTTCGATCTGC-CCTCTGTC-AATACAGAGACGCCAAATCTACT-ATCTTCGATCT
* **
92299334 GCCCTTTGTCAATACAGAGACACCAA
63 GCTCTTTGTCAATACAGAGATGCCAA
** * * ** *
92299360 ATCCACTATCTTCGATCTGCCCTCTGTCAATACAGATATGCCAAAT-TTGTCATCTTTGATCTGC
1 ATCTGCTATCTTCGATCTGCCCTCTGTCAATACAGAGACGCCAAATCTACT-ATCTTCGATCTGC
* *
92299424 T-TTCTGTCAATATAGAGATGCTAA
65 TCTT-TGTCAATACAGAGATGCCAA
* ** * *
92299448 ATCT-ATCATCTTTAATCTGCCCTCTGTCAATACAGAGACGCCAAATCTGCTATCTTTGATCTGC
1 ATCTGCT-ATCTTCGATCTGCCCTCTGTCAATACAGAGACGCCAAATCTACTATCTTCGATCTGC
*** *
92299512 TCCCCGTCGATACAGAGATGCCAA
65 TCTTTGTCAATACAGAGATGCCAA
* * * ** * *
92299536 ATTTGCTATCTTCGATCTGCTCTCTGTCAATACAGAGGCGCCAAATCTGTTATCTTCGATTTGCC
1 ATCTGCTATCTTCGATCTGCCCTCTGTCAATACAGAGACGCCAAATCTACTATCTTCGATCTGCT
* *
92299601 CTCTTATCAATACAGAGAGGCCAA
66 CT-TTGTCAATACAGAGATGCCAA
* * * **
92299625 ATCTG-TCATCTTTGATCTGCTCC-CTGTCGATACAGAAACGCCAAATCCGCTATCTTCGATCTG
1 ATCTGCT-ATCTTCGATCTGC-CCTCTGTCAATACAGAGACGCCAAATCTACTATCTTCGATCTG
92299688 CTCTTTGTCAATACAGAGATGCCAA
64 CTCTTTGTCAATACAGAGATGCCAA
*
92299713 ATATGCTATCTTCGATCTGCCCTCTGTCAATACAGAGACGCCAAATCTACTATCTTCGATCTGCT
1 ATCTGCTATCTTCGATCTGCCCTCTGTCAATACAGAGACGCCAAATCTACTATCTTCGATCTGCT
92299778 CTTTGTCAATACAGAGATGCCAA
66 CTTTGTCAATACAGAGATGCCAA
*
92299801 ATATGCTATCTTCGATCTGCCCTCTGTCAATACAGAGACGCCAAATCTACTATCTTCGATCTGCT
1 ATCTGCTATCTTCGATCTGCCCTCTGTCAATACAGAGACGCCAAATCTACTATCTTCGATCTGCT
92299866 CTTTGTCAATACAGAGATGCCAA
66 CTTTGTCAATACAGAGATGCCAA
*
92299889 ATATGCTATCTTCGATCTGCCCTCTGTCAATACAGAGACGCCAAATCTACTATCTTCGATCTGCT
1 ATCTGCTATCTTCGATCTGCCCTCTGTCAATACAGAGACGCCAAATCTACTATCTTCGATCTGCT
92299954 CTTTGTCAATACAGAGATGCCAA
66 CTTTGTCAATACAGAGATGCCAA
*
92299977 ATATGCTATCTTCGATCTGCCCTCTGTCAATACAGAGACGCCAAATCTACTATCTTCGATCTGCT
1 ATCTGCTATCTTCGATCTGCCCTCTGTCAATACAGAGACGCCAAATCTACTATCTTCGATCTGCT
*
92300042 CTTTGTCAATACAGAGACGCCAA
66 CTTTGTCAATACAGAGATGCCAA
* * *
92300065 ATCTTCTATCTTCTATCTGCTCTCTGTCAATACAGAGACGCCAAATCTACTATCTTCGATCTGCT
1 ATCTGCTATCTTCGATCTGCCCTCTGTCAATACAGAGACGCCAAATCTACTATCTTCGATCTGCT
*
92300130 CTTTGTCAATACAGAGACGCCAA
66 CTTTGTCAATACAGAGATGCCAA
* * * *
92300153 ATCTTCTATCTTCTATCTGCTCTCTGTCAATACAGAGACGCCAAATCTACTATCTTTGATCTGCT
1 ATCTGCTATCTTCGATCTGCCCTCTGTCAATACAGAGACGCCAAATCTACTATCTTCGATCTGCT
**
92300218 CCCTGTCAATACAGAGA
66 CTTTGTCAATACAGAGA
92300235 CACAAAATCT
Statistics
Matches: 795, Mismatches: 68, Indels: 25
0.90 0.08 0.03
Matches are distributed among these distances:
87 6 0.01
88 695 0.87
89 93 0.12
90 1 0.00
ACGTcount: A:0.26, C:0.28, G:0.15, T:0.31
Consensus pattern (88 bp):
ATCTGCTATCTTCGATCTGCCCTCTGTCAATACAGAGACGCCAAATCTACTATCTTCGATCTGCT
CTTTGTCAATACAGAGATGCCAA
Found at i:92308420 original size:15 final size:15
Alignment explanation
Indices: 92308400--92308430 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
92308390 TAACCCTATC
92308400 CAATAACAAAGCTAA
1 CAATAACAAAGCTAA
*
92308415 CAATAACTAAGCTAA
1 CAATAACAAAGCTAA
92308430 C
1 C
92308431 TCTAGACCTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.23, G:0.06, T:0.16
Consensus pattern (15 bp):
CAATAACAAAGCTAA
Found at i:92314516 original size:89 final size:88
Alignment explanation
Indices: 92314247--92314582 Score: 299
Period size: 87 Copynumber: 3.8 Consensus size: 88
92314237 TCCGTTTCGA
* * * ***
92314247 GATTTATTCCCGCCTTTCAACGAATATTATTCCATTTTTTATTTTATTTCCAAATGGGAA--ATT
1 GATTTATTCCCGCCGTTCAACGAAT-TTATTCCAATTTTGATTTTATTTCCAAA-AACAAGTATT
*
92314310 AAAGTT-AAATAAAATTC-ATTTTAG
64 AAAATTAAAAT-AAATTCTATTTTAG
* * * *
92314334 GATTTATTCCCACGGTTCAACGAATTTTATTCCAATTTTGGTTTTATTT--ATAAAACGAGTATT
1 GATTTATTCCCGCCGTTCAACGAA-TTTATTCCAATTTTGATTTTATTTCCA-AAAACAAGTATT
* * * *
92314397 AAAATTAAAATAAAATATGTTTCAG
64 AAAATTAAAATAAATTCTATTTTAG
* * *
92314422 GATTTATTCCTGCCGTTCAACAGAGTTTATTCCAAATTTGATTTTATTTCCAAAAACAAGTATTA
1 GATTTATTCCCGCCGTTCAAC-GAATTTATTCCAATTTTGATTTTATTTCCAAAAACAAGTATTA
*
92314487 AAATTAAAATAAATTCTATTTTGG
65 AAATTAAAATAAATTCTATTTTAG
* * * * * * * * * *
92314511 GATTTATTCTCGTCGTTTAATGGATTTATTAC-ATTTTTATTTTCTTTCCAAAAACGAGAAATTA
1 GATTTATTCCCGCCGTTCAACGAATTTATTCCAATTTTGATTTTATTTCCAAAAACAAG-TATTA
92314575 AAATTAAA
65 AAATTAAA
92314583 GACGTTTAAC
Statistics
Matches: 199, Mismatches: 40, Indels: 19
0.77 0.16 0.07
Matches are distributed among these distances:
85 2 0.01
86 2 0.01
87 75 0.38
88 70 0.35
89 49 0.25
90 1 0.01
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.42
Consensus pattern (88 bp):
GATTTATTCCCGCCGTTCAACGAATTTATTCCAATTTTGATTTTATTTCCAAAAACAAGTATTAA
AATTAAAATAAATTCTATTTTAG
Found at i:92330591 original size:18 final size:18
Alignment explanation
Indices: 92330536--92330595 Score: 68
Period size: 17 Copynumber: 3.3 Consensus size: 18
92330526 AATCCTCCTA
*
92330536 TTTATTTATTTATTTCATT
1 TTTATTT-TTCATTTCATT
* *
92330555 TTTATTTTTCTTTTGATT
1 TTTATTTTTCATTTCATT
*
92330573 TTTA-TTTTCATTTCAAT
1 TTTATTTTTCATTTCATT
92330590 TTTATT
1 TTTATT
92330596 ATTTTATTTT
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
17 14 0.41
18 13 0.38
19 7 0.21
ACGTcount: A:0.18, C:0.07, G:0.02, T:0.73
Consensus pattern (18 bp):
TTTATTTTTCATTTCATT
Found at i:92332873 original size:49 final size:49
Alignment explanation
Indices: 92332794--92332891 Score: 160
Period size: 49 Copynumber: 2.0 Consensus size: 49
92332784 GGGGGTCGCT
*
92332794 CTTTCCAGAACTTTTCTGGAATACAGAACCACATGCCAAGAATTACTTG
1 CTTTCCAGAACTTTTCTGGAATACAAAACCACATGCCAAGAATTACTTG
* **
92332843 CTTTCCAGAACTTTTCTGGAATATAAAACCACATGCCGGGAATTACTTG
1 CTTTCCAGAACTTTTCTGGAATACAAAACCACATGCCAAGAATTACTTG
92332892 AAGGAAGCCA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (49 bp):
CTTTCCAGAACTTTTCTGGAATACAAAACCACATGCCAAGAATTACTTG
Found at i:92333592 original size:13 final size:13
Alignment explanation
Indices: 92333574--92333598 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
92333564 TTAAATTAGT
92333574 TAATTAGTTTAAA
1 TAATTAGTTTAAA
92333587 TAATTAGTTTAA
1 TAATTAGTTTAA
92333599 TAAACAAACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TAATTAGTTTAAA
Found at i:92347768 original size:27 final size:27
Alignment explanation
Indices: 92347730--92347786 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
92347720 TAAGTCTAAA
92347730 ATAAAACAAAACAATACAAATATTTTT
1 ATAAAACAAAACAATACAAATATTTTT
92347757 ATAAAACAAAACAATACAAATATTTTT
1 ATAAAACAAAACAATACAAATATTTTT
92347784 ATA
1 ATA
92347787 GGATATTTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.60, C:0.11, G:0.00, T:0.30
Consensus pattern (27 bp):
ATAAAACAAAACAATACAAATATTTTT
Found at i:92348370 original size:19 final size:19
Alignment explanation
Indices: 92348342--92348378 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
92348332 ACGATTTTCC
*
92348342 CTTTTTCTTTCCACTAAAA
1 CTTTTACTTTCCACTAAAA
92348361 CTTTTACTTTCCACTAAA
1 CTTTTACTTTCCACTAAA
92348379 CCCTCAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.27, C:0.27, G:0.00, T:0.46
Consensus pattern (19 bp):
CTTTTACTTTCCACTAAAA
Found at i:92354497 original size:33 final size:33
Alignment explanation
Indices: 92354455--92354569 Score: 185
Period size: 33 Copynumber: 3.5 Consensus size: 33
92354445 TCAACATACG
92354455 TGATTGGAACATCTATCAAGGCAGCTTCATCAA
1 TGATTGGAACATCTATCAAGGCAGCTTCATCAA
* * *
92354488 TGATTGGAACATCTATCGAGGCAACTTCATCAT
1 TGATTGGAACATCTATCAAGGCAGCTTCATCAA
*
92354521 TGATTGGAACATCTATCAGGGCAGCTTCATCAA
1 TGATTGGAACATCTATCAAGGCAGCTTCATCAA
*
92354554 TGATTGTAACATCTAT
1 TGATTGGAACATCTAT
92354570 TGGGTCAGAT
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 74 1.00
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.30
Consensus pattern (33 bp):
TGATTGGAACATCTATCAAGGCAGCTTCATCAA
Found at i:92354583 original size:33 final size:32
Alignment explanation
Indices: 92354455--92354583 Score: 143
Period size: 33 Copynumber: 3.9 Consensus size: 32
92354445 TCAACATACG
* *
92354455 TGATTGGAACATCTATCAAGGCAGCTTCATCAA
1 TGATTGGAACATCTAT-AGGGCAGATTCATCAA
* *
92354488 TGATTGGAACATCTATCGAGGCA-ACTTCATCAT
1 TGATTGGAACATCTATAG-GGCAGA-TTCATCAA
*
92354521 TGATTGGAACATCTATCAGGGCAGCTTCATCAA
1 TGATTGGAACATCTAT-AGGGCAGATTCATCAA
* *
92354554 TGATTGTAACATCTATTGGGTCAGATTCAT
1 TGATTGGAACATCTATAGGG-CAGATTCAT
92354584 TATTGCTTCA
Statistics
Matches: 81, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
32 3 0.04
33 77 0.95
34 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.31
Consensus pattern (32 bp):
TGATTGGAACATCTATAGGGCAGATTCATCAA
Found at i:92362258 original size:40 final size:40
Alignment explanation
Indices: 92362158--92362259 Score: 102
Period size: 42 Copynumber: 2.5 Consensus size: 40
92362148 ATATTATTTA
*
92362158 TTATATTATTATACATTATTATATATTATATTACATACATT
1 TTATATTATTATATATT-TTATATATTATATTACATACATT
* *
92362199 TTACTA-TATATATATTATTTTATATATTAT-CTATCATA-TTGT
1 TTA-TATTAT-TATA-TATTTTATATATTATATTA-CATACAT-T
92362241 TTATATTATTATATATTTT
1 TTATATTATTATATATTTT
92362260 GTTTATGAAT
Statistics
Matches: 52, Mismatches: 3, Indels: 13
0.76 0.04 0.19
Matches are distributed among these distances:
40 6 0.12
41 15 0.29
42 28 0.54
43 3 0.06
ACGTcount: A:0.35, C:0.06, G:0.01, T:0.58
Consensus pattern (40 bp):
TTATATTATTATATATTTTATATATTATATTACATACATT
Found at i:92362261 original size:21 final size:22
Alignment explanation
Indices: 92362207--92362265 Score: 63
Period size: 21 Copynumber: 2.7 Consensus size: 22
92362197 TTTTACTATA
92362207 TATATATTATT-TTATATATTATC
1 TATATATT-TTGTT-TATATTATC
92362230 TATCATA--TTGTTTATATTAT-
1 TAT-ATATTTTGTTTATATTATC
92362250 TATATATTTTGTTTAT
1 TATATATTTTGTTTAT
92362266 GAATTTTATT
Statistics
Matches: 32, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
19 3 0.09
20 3 0.09
21 18 0.56
22 2 0.06
23 3 0.09
24 3 0.09
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (22 bp):
TATATATTTTGTTTATATTATC
Found at i:92362576 original size:15 final size:16
Alignment explanation
Indices: 92362542--92362578 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
92362532 AATATATTTA
*
92362542 ATTT-TATTTTATTTG
1 ATTTATATTTTATATG
92362557 ATTTATATTTTATATG
1 ATTTATATTTTATATG
92362573 -TTTATA
1 ATTTATA
92362579 ATTTGCTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 10 0.50
16 10 0.50
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (16 bp):
ATTTATATTTTATATG
Found at i:92374398 original size:44 final size:44
Alignment explanation
Indices: 92374348--92375416 Score: 1440
Period size: 44 Copynumber: 24.3 Consensus size: 44
92374338 CACCAGTGAC
* *
92374348 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAG
1 ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
* **
92374392 ATTTGGCATCTCTGTATTATCAGAGAGCAGATTGAAGATAGCAG
1 ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
* * *
92374436 ATTTGACGTCTCTGTATTGTTAGAGAGCAGATCAAAGATAGCAG
1 ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
**
92374480 ATTTGGCATCTCTGTATTGTCAGAGAGCAGATTGAAGATAGCAG
1 ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
* * *
92374524 ATTTGACGTCTCTGTATTGTTAGAGAGCAGATCAAAGATAGCAG
1 ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
* **
92374568 ATTTGGCATCTCTGTATTATCAGAGAGCAGATTGAAGATAGCAG
1 ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
* * *
92374612 ATTTGACGTCTCTGTATTGTTAGAGAGCAGATCAAAGATAGCAG
1 ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
* **
92374656 ATTTGGCATCTCTGTATTATCAGAGAGCAGATTGAAGATAGCAG
1 ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
* * *
92374700 ATTTGACGTCTCTGTATTGTTAGAGAGCAGATCAAAGATAGCAG
1 ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
* **
92374744 ATTTGGCATCTCTGTATTATCAGAGAGCAGATTGAAGATAGCAG
1 ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
* * * * * *
92374788 ATTTGACGTCT-T-TATTGTCAAAGAGAAGATAAAAGATAGTAG
1 ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
* * *
92374830 ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAATATTGCAT
1 ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
*
92374874 ATTTGGCATCTCTGTATTGTCATAGAGCAGATCAAAGATAGCAG
1 ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
* * * * * *
92374918 ATTTGGCGTCTCTTTATTGTCAAAGAGAAGATAAAAGATAGTAG
1 ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
* * *
92374962 ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAATATTGCAT
1 ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
*
92375006 ATTTGGCATCTCTGTATTGTCATAGAGCAGATCAAAGATAGCAG
1 ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
* * * * * *
92375050 ATTTGGCGTCTCTTTATTGTCAAAGAGAAGATAAAAGATAGTAG
1 ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
* * *
92375094 ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAATATTGCAT
1 ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
*
92375138 ATTTGGCATCTCTGTATTGTCATAGAGCAGATCAAAGATAGCAG
1 ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
* * *
92375182 ATTTGGCGTCTCTTTATTGTTAGAGAGCAGATCAAAGATAGCAG
1 ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
* *
92375226 AATTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAG
1 ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
* * * * * *
92375270 ATTTGGCGTCTCTGTATTGTTAGAAAGTAGATCGAATATAGCAG
1 ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
*
92375314 ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAG
1 ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
* * * *
92375358 ATTTGGCGTCTCTGTATTGTTAGAGAACAGATCAAAGATAGCTG
1 ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
* *
92375402 ATTTGACGTCTCTGT
1 ATTTGGCATCTCTGT
92375417 GTGGGTGGGG
Statistics
Matches: 889, Mismatches: 134, Indels: 4
0.87 0.13 0.00
Matches are distributed among these distances:
42 33 0.04
43 2 0.00
44 854 0.96
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (44 bp):
ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
Found at i:92376957 original size:15 final size:15
Alignment explanation
Indices: 92376914--92376957 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 15
92376904 TTTATCTTTG
92376914 TATATTAT-TTATTA
1 TATATTATATTATTA
92376928 TATTATTATACATTATTA
1 TA-TATTAT--ATTATTA
92376946 TATATTATATTA
1 TATATTATATTA
92376958 CATGCATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
14 2 0.08
15 10 0.38
17 6 0.23
18 8 0.31
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (15 bp):
TATATTATATTATTA
Found at i:92376957 original size:30 final size:29
Alignment explanation
Indices: 92376914--92377004 Score: 75
Period size: 30 Copynumber: 3.2 Consensus size: 29
92376904 TTTATCTTTG
92376914 TATAT-TATT-TATTATATTATTATAC-A
1 TATATATATTATATTATATTATTATACTA
* * *
92376940 TTATTATATATTATATTACATGCATTTTACTA
1 -TA-TATATATTATATTATAT-TATTATACTA
*
92376972 TATATATATTATTTTATA-TATTAT-CTA
1 TATATATATTATATTATATTATTATACTA
92376999 TCATAT
1 T-ATAT
92377005 TGTTTATATT
Statistics
Matches: 51, Mismatches: 7, Indels: 11
0.74 0.10 0.16
Matches are distributed among these distances:
27 6 0.12
28 11 0.22
29 4 0.08
30 21 0.41
31 8 0.16
32 1 0.02
ACGTcount: A:0.36, C:0.07, G:0.01, T:0.56
Consensus pattern (29 bp):
TATATATATTATATTATATTATTATACTA
Found at i:92377025 original size:40 final size:39
Alignment explanation
Indices: 92376925--92377026 Score: 93
Period size: 42 Copynumber: 2.5 Consensus size: 39
92376915 ATATTATTTA
*
92376925 TTATATTATTATACATTATTATATATTATATTACATGCATT
1 TTATATTATTATATATT-TTATATATTATATTACAT-CATT
*
92376966 TTACTA-TATATATATTATTTTATATATTAT-CTATCAT-ATTGT
1 TTA-TATTAT-TATA-TATTTTATATATTATATTA-CATCA-T-T
92377008 TTATATTATTATATATTTT
1 TTATATTATTATATATTTT
92377027 GTTTATAAAT
Statistics
Matches: 52, Mismatches: 2, Indels: 15
0.75 0.03 0.22
Matches are distributed among these distances:
40 7 0.13
41 15 0.29
42 27 0.52
43 3 0.06
ACGTcount: A:0.34, C:0.06, G:0.02, T:0.58
Consensus pattern (39 bp):
TTATATTATTATATATTTTATATATTATATTACATCATT
Found at i:92377028 original size:21 final size:22
Alignment explanation
Indices: 92376974--92377033 Score: 65
Period size: 21 Copynumber: 2.8 Consensus size: 22
92376964 TTTTACTATA
92376974 TATATATTATT-TTATATATTATC
1 TATATATT-TTGTT-TATATTATC
92376997 TATCATA--TTGTTTATATTAT-
1 TAT-ATATTTTGTTTATATTATC
92377017 TATATATTTTGTTTATA
1 TATATATTTTGTTTATA
92377034 AATTTTATTA
Statistics
Matches: 33, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
19 3 0.09
20 3 0.09
21 19 0.58
22 2 0.06
23 3 0.09
24 3 0.09
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (22 bp):
TATATATTTTGTTTATATTATC
Found at i:92377350 original size:16 final size:16
Alignment explanation
Indices: 92377309--92377346 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
92377299 TAATATCTTT
* *
92377309 ATTTTTATTTTATTTG
1 ATTTATATTTTATATG
92377325 ATTTATATTTTATATG
1 ATTTATATTTTATATG
92377341 -TTTATA
1 ATTTATA
92377347 ATTTNNNNNN
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.68
Consensus pattern (16 bp):
ATTTATATTTTATATG
Done.