Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 275 of 284
Found at i:92394393 original size:50 final size:51
Alignment explanation
Indices: 92394316--92394444 Score: 197
Period size: 50 Copynumber: 2.5 Consensus size: 51
92394306 GACTATGGCA
* *
92394316 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTAATCAAGGATAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTAATCAAGGACAAATG
* *
92394367 A-AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTAATCAAGGACAAATG
* *
92394417 ACAAGTGAAAAGTGGTAGCTTCGGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
92394445 CTAATCAGTG
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
50 46 0.66
51 24 0.34
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTAATCAAGGACAAATG
Found at i:92394458 original size:31 final size:31
Alignment explanation
Indices: 92394420--92394537 Score: 191
Period size: 31 Copynumber: 3.8 Consensus size: 31
92394410 ACAAATGACA
*
92394420 AGTGAAAAGTGGTAGCTTCGGCTACCTAATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
92394451 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
92394482 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
92394513 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
92394538 AAGTGACAAG
Statistics
Matches: 79, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 79 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:92394673 original size:46 final size:49
Alignment explanation
Indices: 92394606--92394711 Score: 148
Period size: 46 Copynumber: 2.2 Consensus size: 49
92394596 TGCTACTGTA
*
92394606 TAAGACCATATCTGGAATATGGCATC-A-ATGAGATATGTGATT-CGTG
1 TAAGACCATAGCTGGAATATGGCATCGATATGAGATATGTGATTACGTG
* *
92394652 TAAGACCATAGCT-GAGCTATGGCATCGATATGCGATATGTGATTACGTG
1 TAAGACCATAGCTGGA-ATATGGCATCGATATGAGATATGTGATTACGTG
92394701 TAAGACCATAG
1 TAAGACCATAG
92394712 TTAAACTATG
Statistics
Matches: 53, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
45 2 0.04
46 21 0.40
47 1 0.02
48 14 0.26
49 15 0.28
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (49 bp):
TAAGACCATAGCTGGAATATGGCATCGATATGAGATATGTGATTACGTG
Found at i:92394721 original size:49 final size:46
Alignment explanation
Indices: 92394606--92394721 Score: 135
Period size: 49 Copynumber: 2.5 Consensus size: 46
92394596 TGCTACTGTA
* *
92394606 TAAGACCATATCTGGAA-TATGGCATCAATGAGATATGTGATTCGTG
1 TAAGACCATAGCT-AAACTATGGCATCAATGAGATATGTGATTCGTG
* * *
92394652 TAAGACCATAGCTGAGCTATGGCATCGATATGCGATATGTGATTACGTG
1 TAAGACCATAGCTAAACTATGGCATC-A-ATGAGATATGTGATT-CGTG
*
92394701 TAAGACCATAGTTAAACTATG
1 TAAGACCATAGCTAAACTATG
92394722 ACATTGAGTA
Statistics
Matches: 60, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
45 2 0.03
46 21 0.35
47 1 0.02
48 14 0.23
49 22 0.37
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (46 bp):
TAAGACCATAGCTAAACTATGGCATCAATGAGATATGTGATTCGTG
Found at i:92400950 original size:38 final size:36
Alignment explanation
Indices: 92400888--92400961 Score: 94
Period size: 38 Copynumber: 2.0 Consensus size: 36
92400878 AGTAAAATAG
92400888 GAGGAGAAACAAATATGCCACATGAAAAAGAGGCAA
1 GAGGAGAAACAAATATGCCACATGAAAAAGAGGCAA
* * * *
92400924 NGAGGAGAAATAGATTATGCCCCATGAGAAAGAGGCAA
1 -GAGGAGAAACA-AATATGCCACATGAAAAAGAGGCAA
92400962 TAGAGAATGT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
37 10 0.31
38 22 0.69
ACGTcount: A:0.47, C:0.14, G:0.27, T:0.11
Consensus pattern (36 bp):
GAGGAGAAACAAATATGCCACATGAAAAAGAGGCAA
Found at i:92405450 original size:44 final size:44
Alignment explanation
Indices: 92405402--92405769 Score: 445
Period size: 44 Copynumber: 8.3 Consensus size: 44
92405392 CGTTTACAAG
* *
92405402 GAGCAGATCGAAGATAGCAAATTTGGCATCTTTGTATTGTCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGA
* *
92405446 GAGCAGATCGAAGATAGCAAATTCGGCATCTCTGTATTGTCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGA
* * * * *
92405490 AAGTAGATCAAAGATAGCAGATTTGGAATCTTTGTATTGTCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGA
* * * *
92405534 GAACAGATCGAAGATAGAAGATTTGGCATCTCTATATTGCCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGA
* *
92405578 GAACAGATCGAAGATAGCAGATTTGGCATCTCTATATTGTCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGA
*
92405622 GAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAAA
1 GAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGA
* *
92405666 GAGCAGATCGAAGATAGTAGATTTGGCATCT-TCGTATT-TAATGA
1 GAGCAGATCGAAGATAGCAGATTTGGCATCTCT-GTATTGTCA-GA
* * * * * * *
92405710 GGAGCAAATCCAAGA-AGTAGATTTGGCATTTCCGTATTCGACAGG
1 -GAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATT-GTCAGA
*
92405755 GAGCAGATCCAAGAT
1 GAGCAGATCGAAGAT
92405770 GATTTGGCAT
Statistics
Matches: 283, Mismatches: 34, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
43 3 0.01
44 266 0.94
45 13 0.05
46 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.27
Consensus pattern (44 bp):
GAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGA
Found at i:92405732 original size:88 final size:88
Alignment explanation
Indices: 92405402--92405952 Score: 439
Period size: 88 Copynumber: 6.2 Consensus size: 88
92405392 CGTTTACAAG
* * * * *
92405402 GAGCAGATCGAAGATAGCAAATTTGGCATCTTTGTATTGTCAGA-GAGCAGATCGAAGATAGCAA
1 GAGCAGATCGAAGATAGCAGATTTGGCATCTTCGTATT-TCAGAGGAGCAAATCCAAGATAGCAG
* *
92405466 ATTCGGCATCTCTGTATTGTCAGA
65 ATTTGGCATCTCTGTATTGACAGA
* * * * * * * * *
92405490 AAGTAGATCAAAGATAGCAGATTTGGAATCTTTGTATTGTCAGA-GAACAGATCGAAGATAGAAG
1 GAGCAGATCGAAGATAGCAGATTTGGCATCTTCGTATT-TCAGAGGAGCAAATCCAAGATAGCAG
* *
92405554 ATTTGGCATCTCTATATTGCCAGA
65 ATTTGGCATCTCTGTATTGACAGA
* * * *
92405578 GAACAGATCGAAGATAGCAGATTTGGCATC-TCTATATTGTCAGA-GAGCAGATCGAAGATAGCA
1 GAGCAGATCGAAGATAGCAGATTTGGCATCTTC-GTATT-TCAGAGGAGCAAATCCAAGATAGCA
* *
92405641 GATTTGGCATCTCTGTATTGTCAAA
64 GATTTGGCATCTCTGTATTGACAGA
* * *
92405666 GAGCAGATCGAAGATAGTAGATTTGGCATCTTCGTATTTAATGAGGAGCAAATCCAAGA-AGTAG
1 GAGCAGATCGAAGATAGCAGATTTGGCATCTTCGTATTTCA-GAGGAGCAAATCCAAGATAGCAG
* * *
92405730 ATTTGGCATTTCCGTATTCGACAGG
65 ATTTGGCATCTCTGTATT-GACAGA
* *
92405755 GAGCAGATCCAAGAT----GATTTGGCATCTTCGTA-TTCGACGAGGAGTAAATCCAAGA-AGCA
1 GAGCAGATCGAAGATAGCAGATTTGGCATCTTCGTATTTC-A-GAGGAGCAAATCCAAGATAGCA
* * * *
92405814 GATTTGGCATCCCCGTATTTGACGGG
64 GATTTGGCATCTCTGTA-TTGACAGA
* * * * * * *
92405840 GGGCAGATCTAAGAT-GATAGATTTGGCATCTCCATA-TTCGACGGGGAGCAAAACCAAGA-AG-
1 GAGCAGATCGAAGATAG-CAGATTTGGCATCTTCGTATTTC-A-GAGGAGCAAATCCAAGATAGC
* *
92405901 ATGATTTGGCATCTCTGTATTTGACGGG
63 A-GATTTGGCATCTCTGTA-TTGACAGA
*
92405929 GAGCAAATCGAAGACATAGCAGAT
1 GAGCAGATCGAAG--ATAGCAGAT
92405953 CCAACCTTTG
Statistics
Matches: 392, Mismatches: 56, Indels: 27
0.83 0.12 0.06
Matches are distributed among these distances:
84 2 0.01
85 70 0.18
86 2 0.01
87 3 0.01
88 206 0.53
89 102 0.26
91 6 0.02
92 1 0.00
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.26
Consensus pattern (88 bp):
GAGCAGATCGAAGATAGCAGATTTGGCATCTTCGTATTTCAGAGGAGCAAATCCAAGATAGCAGA
TTTGGCATCTCTGTATTGACAGA
Found at i:92405788 original size:85 final size:85
Alignment explanation
Indices: 92405683--92405942 Score: 306
Period size: 85 Copynumber: 3.0 Consensus size: 85
92405673 TCGAAGATAG
** * *
92405683 TAGATTTGGCATCTTCGTATTTAATGAGGAGCAAATCCAAGAAGTAGATTTGGCATTTCCGTATT
1 TAGATTTGGCATCTTCGTATTCGACGAGGAGCAAATCCAAGAAG-AGATTTGGCATCTCCGTATT
* * *
92405748 CGACAGGGAGCAGATCCAAGA
65 TGACGGGGAGCAGATCAAAGA
* *
92405769 T-GATTTGGCATCTTCGTATTCGACGAGGAGTAAATCCAAGAAGCAGATTTGGCATCCCCGTATT
1 TAGATTTGGCATCTTCGTATTCGACGAGGAGCAAATCCAAGAAG-AGATTTGGCATCTCCGTATT
*
92405833 TGACGGGGGGCAGATCTAAGATGA
65 TGACGGGGAGCAGATC-AA-A-GA
* * * * *
92405857 TAGATTTGGCATCTCCATATTCGACGGGGAGCAAAACCAAGAAGATGATTTGGCATCTCTGTATT
1 TAGATTTGGCATCTTCGTATTCGACGAGGAGCAAATCCAAGAAGA-GATTTGGCATCTCCGTATT
* *
92405922 TGACGGGGAGCAAATCGAAGA
65 TGACGGGGAGCAGATCAAAGA
92405943 CATAGCAGAT
Statistics
Matches: 148, Mismatches: 21, Indels: 10
0.83 0.12 0.06
Matches are distributed among these distances:
85 69 0.47
86 4 0.03
87 2 0.01
88 5 0.03
89 68 0.46
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.26
Consensus pattern (85 bp):
TAGATTTGGCATCTTCGTATTCGACGAGGAGCAAATCCAAGAAGAGATTTGGCATCTCCGTATTT
GACGGGGAGCAGATCAAAGA
Found at i:92405914 original size:44 final size:44
Alignment explanation
Indices: 92405685--92405942 Score: 256
Period size: 44 Copynumber: 5.9 Consensus size: 44
92405675 GAAGATAGTA
* ** * *
92405685 GATTTGGCATCTTCGTATTTAATGAGGAGCAAATCCAAGAAG-T
1 GATTTGGCATCTCCGTATTCGACGGGGAGCAAATCCAAGAAGAT
* * *
92405728 AGATTTGGCATTTCCGTATTCGACAGGGAGCAGATCC---AAGAT
1 -GATTTGGCATCTCCGTATTCGACGGGGAGCAAATCCAAGAAGAT
* * *
92405770 GATTTGGCATCTTCGTATTCGACGAGGAGTAAATCCAAGAAGCA-
1 GATTTGGCATCTCCGTATTCGACGGGGAGCAAATCCAAGAAG-AT
* * * * * *
92405814 GATTTGGCATCCCCGTATTTGACGGGGGGCAGATCTAAGATGAT
1 GATTTGGCATCTCCGTATTCGACGGGGAGCAAATCCAAGAAGAT
* *
92405858 AGATTTGGCATCTCCATATTCGACGGGGAGCAAAACCAAGAAGAT
1 -GATTTGGCATCTCCGTATTCGACGGGGAGCAAATCCAAGAAGAT
* * *
92405903 GATTTGGCATCTCTGTATTTGACGGGGAGCAAATCGAAGA
1 GATTTGGCATCTCCGTATTCGACGGGGAGCAAATCCAAGA
92405943 CATAGCAGAT
Statistics
Matches: 171, Mismatches: 36, Indels: 14
0.77 0.16 0.06
Matches are distributed among these distances:
41 33 0.19
42 1 0.01
43 1 0.01
44 99 0.58
45 37 0.22
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.26
Consensus pattern (44 bp):
GATTTGGCATCTCCGTATTCGACGGGGAGCAAATCCAAGAAGAT
Found at i:92406092 original size:80 final size:79
Alignment explanation
Indices: 92405898--92406101 Score: 230
Period size: 80 Copynumber: 2.6 Consensus size: 79
92405888 CAAAACCAAG
* *
92405898 AAGATGATTT-GGCATCTCTGTATTTGACGGGGAGCAAATCGAAGACATAGCAGATCCAACCTTT
1 AAGATGATTTGGGCATCTCTGTATTCGACGGGGAGCAAATCGAAGACATAGCAGATCCAACCTTC
* *
92405962 GTCGAGGCAGATCC
66 ATCAAGGCAGATCC
* * * ** * * **
92405976 AAGATGATTTGGACATCTCTGTAATGGACGCAGAGCAAATCAAAGACATTAGTAGATCTGACCTT
1 AAGATGATTTGGGCATCTCTGTATTCGACGGGGAGCAAATCGAAGACA-TAGCAGATCCAACCTT
* *
92406041 CATCAAGGCTGATTC
65 CATCAAGGCAGATCC
* * *
92406056 AAGATGATTTGGGCGTCTCTGTATTCAACGGGGAGCAGATCGAAGA
1 AAGATGATTTGGGCATCTCTGTATTCGACGGGGAGCAAATCGAAGA
92406102 ACTCAAGACT
Statistics
Matches: 101, Mismatches: 23, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
78 10 0.10
79 31 0.31
80 60 0.59
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (79 bp):
AAGATGATTTGGGCATCTCTGTATTCGACGGGGAGCAAATCGAAGACATAGCAGATCCAACCTTC
ATCAAGGCAGATCC
Found at i:92406916 original size:56 final size:58
Alignment explanation
Indices: 92406854--92406972 Score: 172
Period size: 59 Copynumber: 2.1 Consensus size: 58
92406844 GAAAGGTGAT
* * *
92406854 ATTTTGTTTTTTTTTATTTTTTCG-TT-T-TTGTTTTTTTCAATACATACAAAATAAC
1 ATTTTGTTTATTGTTATTTTTTCGTTTCTGTTGTTTTTTTCAATACATACAAAACAAC
*
92406909 ATNTTTGTTTATTGTTATTTTTTCGTTTCTGTTTTTTTTTTCAATACATACAAAACAAC
1 AT-TTTGTTTATTGTTATTTTTTCGTTTCTGTTGTTTTTTTCAATACATACAAAACAAC
92406968 ATTTT
1 ATTTT
92406973 TAAAGAATAT
Statistics
Matches: 56, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
55 2 0.04
56 20 0.36
57 2 0.04
58 4 0.07
59 28 0.50
ACGTcount: A:0.24, C:0.10, G:0.06, T:0.60
Consensus pattern (58 bp):
ATTTTGTTTATTGTTATTTTTTCGTTTCTGTTGTTTTTTTCAATACATACAAAACAAC
Found at i:92407648 original size:25 final size:22
Alignment explanation
Indices: 92407590--92407650 Score: 77
Period size: 23 Copynumber: 2.6 Consensus size: 22
92407580 TTAATCCTTT
*
92407590 TTTATATATTTCTAAATTTTTTA
1 TTTATTTATTT-TAAATTTTTTA
92407613 TTTATTTATTTTAAATATTTTATA
1 TTTATTTATTTTAAAT-TTTT-TA
92407637 TATTATTTATTTTA
1 T-TTATTTATTTTA
92407651 CTATAAACAT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
22 5 0.15
23 14 0.41
24 3 0.09
25 12 0.35
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (22 bp):
TTTATTTATTTTAAATTTTTTA
Found at i:92407763 original size:29 final size:30
Alignment explanation
Indices: 92407677--92407793 Score: 96
Period size: 33 Copynumber: 3.7 Consensus size: 30
92407667 TATATAAAAA
*
92407677 ATTATTTATCGTATATTATTT-TATTATATAT
1 ATTATTTAT--TATGTTATTTATATTATATAT
*
92407708 -TTATATTATTATGTTATGTTGTCTATTATATAT
1 ATTAT-TTATTATGTTA--TT-TATATTATATAT
*
92407741 ATTATCTATTAT-TTATTTATATTTTATCATAT
1 ATTATTTATTATGTTATTTATA--TTAT-ATAT
*
92407773 ATTATTTATTATGTTGTTTAT
1 ATTATTTATTATGTTATTTAT
92407794 CTTTATCTTT
Statistics
Matches: 71, Mismatches: 5, Indels: 18
0.76 0.05 0.19
Matches are distributed among these distances:
29 9 0.13
30 6 0.08
31 10 0.14
32 19 0.27
33 23 0.32
34 4 0.06
ACGTcount: A:0.29, C:0.03, G:0.05, T:0.62
Consensus pattern (30 bp):
ATTATTTATTATGTTATTTATATTATATAT
Found at i:92411502 original size:27 final size:27
Alignment explanation
Indices: 92411455--92411522 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
92411445 GAAGTGTATT
* * *
92411455 ATACCGGTGGCTTTGCTACATATACTG
1 ATACTGGTGGCTTTACCACATATACTG
*
92411482 CTACTGGTGGCTTTACCACATATACTG
1 ATACTGGTGGCTTTACCACATATACTG
* *
92411509 ATATTGGTAGCTTT
1 ATACTGGTGGCTTT
92411523 GCTGCATTAC
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.22, C:0.21, G:0.21, T:0.37
Consensus pattern (27 bp):
ATACTGGTGGCTTTACCACATATACTG
Found at i:92412801 original size:54 final size:54
Alignment explanation
Indices: 92412758--92413920 Score: 1572
Period size: 54 Copynumber: 21.5 Consensus size: 54
92412748 CCAAAGTACT
* * **
92412758 CTCGATTTACAGAATTACCGTTTTACCCTCAATTTACAGAATTATTATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACCATTTTACC
* * *
92412812 TTCGATTTATAGAATTACCGTTTTACCCTCAGTTTATAGAATTACTATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACCATTTTACC
*
92412866 CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACTATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACCATTTTACC
*
92412920 CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACTATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACCATTTTACC
*
92412974 CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACTATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACCATTTTACC
*
92413028 CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACTATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACCATTTTACC
*
92413082 CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACTATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACCATTTTACC
* * * *
92413136 CTCGATTTACAGAATTATCGTTTTACCCTC-GATTTGTAAAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACCCTCAG-TTTATAGAATTACCATTTTACC
* * * * * *
92413190 CTTGATTTACAGAATTACTAG-TTTACCCTCAGTTTACAAAATTATCGTTTTACC
1 CTCGATTTACAGAATTAC-CGTTTTACCCTCAGTTTATAGAATTACCATTTTACC
*
92413244 CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACTATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACCATTTTACC
* * * *
92413298 CTCGATTTACAGAATTATCGTTTTACCCTC-GATTTGTAAAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACCCTCAG-TTTATAGAATTACCATTTTACC
* * * * * *
92413352 CTTGATTTACAGAATTACTAG-TTTACCCTCAGTTTACAAAATTATCGTTTTACC
1 CTCGATTTACAGAATTAC-CGTTTTACCCTCAGTTTATAGAATTACCATTTTACC
*
92413406 CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACTATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACCATTTTACC
* * * *
92413460 CTCGATTTACAGAATTATCGTTTTACCCTC-GATTTGTAAAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACCCTCAG-TTTATAGAATTACCATTTTACC
* * * * * *
92413514 CTTGATTTACAGAATTACTAG-TTTACCCTCAGTTTACAAAATTATCGTTTTACC
1 CTCGATTTACAGAATTAC-CGTTTTACCCTCAGTTTATAGAATTACCATTTTACC
*
92413568 CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACTATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACCATTTTACC
* * * *
92413622 CTCGATTTACAGAATTATCGTTTTACCCTC-GATTTGTAAAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACCCTCAG-TTTATAGAATTACCATTTTACC
* * * * * *
92413676 CTTGATTTACAGAATTACTAG-TTTACCCTCAGTTTACAAAATTATCGTTTTACC
1 CTCGATTTACAGAATTAC-CGTTTTACCCTCAGTTTATAGAATTACCATTTTACC
*
92413730 CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACTATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACCATTTTACC
* * * *
92413784 CTCGATTTACAGAATTATCGTTTTACCCTC-GATTTGTAAAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACCCTCAG-TTTATAGAATTACCATTTTACC
* * * * * *
92413838 CTTGATTTACAGAATTACTAG-TTTACCCTCAGTTTACAAAATTATCGTTTTACC
1 CTCGATTTACAGAATTAC-CGTTTTACCCTCAGTTTATAGAATTACCATTTTACC
92413892 CTCGATTTACAGAATTACCGTTTTACCCT
1 CTCGATTTACAGAATTACCGTTTTACCCT
92413921 TGATTGTGAA
Statistics
Matches: 997, Mismatches: 92, Indels: 40
0.88 0.08 0.04
Matches are distributed among these distances:
53 10 0.01
54 977 0.98
55 10 0.01
ACGTcount: A:0.28, C:0.22, G:0.10, T:0.41
Consensus pattern (54 bp):
CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACCATTTTACC
Found at i:92413025 original size:162 final size:162
Alignment explanation
Indices: 92412758--92413920 Score: 2005
Period size: 162 Copynumber: 7.2 Consensus size: 162
92412748 CCAAAGTACT
* * * * *
92412758 CTCGATTTACAGAATTACCGTTTTACCCTCAATTTACAGAATTATTATTTTACCTTCGATTTATA
1 CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACTATTTTACCCTCGATTTACA
* * * ** * *
92412823 GAATTACCGTTTTACCCTC-AGTTTATAGAATTACTATTTTACCCTCGATTTACAGAATTAC-CG
66 GAATTATCGTTTTACCCTCGA-TTTGTAAAATTACCGTTTTACCCTTGATTTACAGAATTACTAG
* * *
92412886 TTTTACCCTCAGTTTATAGAATTA-CTATTTTACC
130 -TTTACCCTCAGTTTACAAAATTATC-GTTTTACC
92412920 CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACTATTTTACCCTCGATTTACA
1 CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACTATTTTACCCTCGATTTACA
* * * ** * *
92412985 GAATTACCGTTTTACCCTC-AGTTTATAGAATTACTATTTTACCCTCGATTTACAGAATTAC-CG
66 GAATTATCGTTTTACCCTCGA-TTTGTAAAATTACCGTTTTACCCTTGATTTACAGAATTACTAG
* * *
92413048 TTTTACCCTCAGTTTATAGAATTA-CTATTTTACC
130 -TTTACCCTCAGTTTACAAAATTATC-GTTTTACC
92413082 CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACTATTTTACCCTCGATTTACA
1 CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACTATTTTACCCTCGATTTACA
92413147 GAATTATCGTTTTACCCTCGATTTGTAAAATTACCGTTTTACCCTTGATTTACAGAATTACTAGT
66 GAATTATCGTTTTACCCTCGATTTGTAAAATTACCGTTTTACCCTTGATTTACAGAATTACTAGT
92413212 TTACCCTCAGTTTACAAAATTATCGTTTTACC
131 TTACCCTCAGTTTACAAAATTATCGTTTTACC
92413244 CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACTATTTTACCCTCGATTTACA
1 CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACTATTTTACCCTCGATTTACA
92413309 GAATTATCGTTTTACCCTCGATTTGTAAAATTACCGTTTTACCCTTGATTTACAGAATTACTAGT
66 GAATTATCGTTTTACCCTCGATTTGTAAAATTACCGTTTTACCCTTGATTTACAGAATTACTAGT
92413374 TTACCCTCAGTTTACAAAATTATCGTTTTACC
131 TTACCCTCAGTTTACAAAATTATCGTTTTACC
92413406 CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACTATTTTACCCTCGATTTACA
1 CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACTATTTTACCCTCGATTTACA
92413471 GAATTATCGTTTTACCCTCGATTTGTAAAATTACCGTTTTACCCTTGATTTACAGAATTACTAGT
66 GAATTATCGTTTTACCCTCGATTTGTAAAATTACCGTTTTACCCTTGATTTACAGAATTACTAGT
92413536 TTACCCTCAGTTTACAAAATTATCGTTTTACC
131 TTACCCTCAGTTTACAAAATTATCGTTTTACC
92413568 CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACTATTTTACCCTCGATTTACA
1 CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACTATTTTACCCTCGATTTACA
92413633 GAATTATCGTTTTACCCTCGATTTGTAAAATTACCGTTTTACCCTTGATTTACAGAATTACTAGT
66 GAATTATCGTTTTACCCTCGATTTGTAAAATTACCGTTTTACCCTTGATTTACAGAATTACTAGT
92413698 TTACCCTCAGTTTACAAAATTATCGTTTTACC
131 TTACCCTCAGTTTACAAAATTATCGTTTTACC
92413730 CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACTATTTTACCCTCGATTTACA
1 CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACTATTTTACCCTCGATTTACA
92413795 GAATTATCGTTTTACCCTCGATTTGTAAAATTACCGTTTTACCCTTGATTTACAGAATTACTAGT
66 GAATTATCGTTTTACCCTCGATTTGTAAAATTACCGTTTTACCCTTGATTTACAGAATTACTAGT
92413860 TTACCCTCAGTTTACAAAATTATCGTTTTACC
131 TTACCCTCAGTTTACAAAATTATCGTTTTACC
92413892 CTCGATTTACAGAATTACCGTTTTACCCT
1 CTCGATTTACAGAATTACCGTTTTACCCT
92413921 TGATTGTGAA
Statistics
Matches: 983, Mismatches: 15, Indels: 6
0.98 0.01 0.01
Matches are distributed among these distances:
162 980 1.00
163 3 0.00
ACGTcount: A:0.28, C:0.22, G:0.10, T:0.41
Consensus pattern (162 bp):
CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACTATTTTACCCTCGATTTACA
GAATTATCGTTTTACCCTCGATTTGTAAAATTACCGTTTTACCCTTGATTTACAGAATTACTAGT
TTACCCTCAGTTTACAAAATTATCGTTTTACC
Found at i:92414125 original size:27 final size:27
Alignment explanation
Indices: 92413930--92414125 Score: 239
Period size: 27 Copynumber: 7.3 Consensus size: 27
92413920 TTGATTGTGA
* *
92413930 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
92413957 AATTTCCGAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
** * *
92413984 AATTATTGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
92414011 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
92414038 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
92414065 AAATACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
92414092 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
92414119 AATTACC
1 AATTACC
92414126 ATTTTGCGCC
Statistics
Matches: 142, Mismatches: 27, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 142 1.00
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:92414367 original size:27 final size:27
Alignment explanation
Indices: 92414328--92414386 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
92414318 GGAAGCGTTC
92414328 TGGTGGCTATGCCACAAATATCTGT-TT
1 TGGTGGCTATGCCAC-AATATCTGTATT
*
92414355 TGGTGGCTCTGCCACAATATCTGTATT
1 TGGTGGCTATGCCACAATATCTGTATT
92414382 TGGTG
1 TGGTG
92414387 ACTCCATCAC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
26 9 0.30
27 21 0.70
ACGTcount: A:0.19, C:0.19, G:0.25, T:0.37
Consensus pattern (27 bp):
TGGTGGCTATGCCACAATATCTGTATT
Found at i:92414397 original size:27 final size:26
Alignment explanation
Indices: 92414339--92414406 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 26
92414329 GGTGGCTATG
* **
92414339 CCACAAATATCTGTTTTGGTGGCTCTG
1 CCAC-AATATCTGTTTTGGTGACTCCA
92414366 CCACAATATCTGTATTTGGTGACTCCA
1 CCACAATATCTGT-TTTGGTGACTCCA
*
92414393 TCACAATATCTGTT
1 CCACAATATCTGTT
92414407 GACCGATCGA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
26 10 0.28
27 26 0.72
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (26 bp):
CCACAATATCTGTTTTGGTGACTCCA
Found at i:92414526 original size:22 final size:22
Alignment explanation
Indices: 92414494--92414552 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 22
92414484 CCCGTTATTA
*
92414494 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * *
92414516 ATGGCTTTGTGCCATCTTAACT
1 ATGGCTTTGTGCCAACCTAAAT
*
92414538 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
92414553 ACGTATTTAC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:92414739 original size:27 final size:27
Alignment explanation
Indices: 92414717--92414783 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
92414707 TAGGTGGGTT
*
92414717 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
92414744 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
92414771 TGTCACGATATCT
1 TGCCACAATATCT
92414784 ATTCTGGCAG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 34 0.97
28 1 0.03
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:92414917 original size:6 final size:6
Alignment explanation
Indices: 92414908--92414995 Score: 67
Period size: 6 Copynumber: 14.5 Consensus size: 6
92414898 TTGCATTCAC
* * *
92414908 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG ATTCTG ATTTTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
*
92414957 -TTACTA ATAT-TG ATTCTG ATTCTG -TTACTG ATTCTG ATT
1 ATT-CTG AT-TCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATT
92414996 TTCATTTTCG
Statistics
Matches: 65, Mismatches: 8, Indels: 18
0.71 0.09 0.20
Matches are distributed among these distances:
5 6 0.09
6 52 0.80
7 5 0.08
8 2 0.03
ACGTcount: A:0.20, C:0.15, G:0.15, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:92414943 original size:31 final size:30
Alignment explanation
Indices: 92414908--92414980 Score: 103
Period size: 31 Copynumber: 2.4 Consensus size: 30
92414898 TTGCATTCAC
92414908 ATTCTGATTCTGATTCTGTCACGTAAT-TCTG
1 ATTCTGATTCTGATTCTGTCAC-TAATAT-TG
* *
92414939 ATTCTGATTCTGATTTTGTTACTAATATTG
1 ATTCTGATTCTGATTCTGTCACTAATATTG
92414969 ATTCTGATTCTG
1 ATTCTGATTCTG
92414981 TTACTGATTC
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
30 18 0.46
31 21 0.54
ACGTcount: A:0.21, C:0.15, G:0.15, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTCACTAATATTG
Found at i:92414994 original size:24 final size:24
Alignment explanation
Indices: 92414936--92414995 Score: 86
Period size: 24 Copynumber: 2.5 Consensus size: 24
92414926 TCACGTAATT
*
92414936 CTGATTCTGATTCTGATTTTGTTA
1 CTGATTCTGATTCTGATTCTGTTA
*
92414960 CTAATAT-TGATTCTGATTCTGTTA
1 CTGAT-TCTGATTCTGATTCTGTTA
92414984 CTGATTCTGATT
1 CTGATTCTGATT
92414996 TTCATTTTCG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
23 1 0.03
24 29 0.94
25 1 0.03
ACGTcount: A:0.20, C:0.13, G:0.15, T:0.52
Consensus pattern (24 bp):
CTGATTCTGATTCTGATTCTGTTA
Found at i:92418838 original size:37 final size:37
Alignment explanation
Indices: 92418774--92418847 Score: 91
Period size: 37 Copynumber: 2.0 Consensus size: 37
92418764 TTACAAGCCA
92418774 AAATCATTATAAGCCACATCTCATGGCTACAT-ACAAC
1 AAATCATTATAAGCCACATCTCATGGCTA-ATCACAAC
*
92418811 AAATCATTATAAGCCA-ATACAT-TTGGCTAATCACAAC
1 AAATCATTATAAGCCACAT-C-TCATGGCTAATCACAAC
92418848 GACGTCGATC
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
36 4 0.12
37 28 0.85
38 1 0.03
ACGTcount: A:0.42, C:0.24, G:0.08, T:0.26
Consensus pattern (37 bp):
AAATCATTATAAGCCACATCTCATGGCTAATCACAAC
Found at i:92440346 original size:40 final size:40
Alignment explanation
Indices: 92440288--92440475 Score: 195
Period size: 40 Copynumber: 4.8 Consensus size: 40
92440278 TAATTATACA
* * *
92440288 TGATTGCACATACATGCCCCTATTTGTACTTTGGTACCCC
1 TGATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * *
92440328 TGATTGCACATACGTGCCCCTATTTG---TTCGATAACCC
1 TGATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
** * *
92440365 TGATCCCACATACGTG-CCCTGCTTGTACTTCGGTACCCA
1 TGATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * * * *
92440404 TGATTGCACATATGTGCCCATGCTTGTACTTCAGTACCCT
1 TGATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* *
92440444 TGATTGCACATACGTACCCCTGTTTATACTTC
1 TGATTGCACATACGTGCCCCTGTTTGTACTTC
92440476 AATAATTTCA
Statistics
Matches: 122, Mismatches: 22, Indels: 8
0.80 0.14 0.05
Matches are distributed among these distances:
36 7 0.06
37 22 0.18
39 21 0.17
40 72 0.59
ACGTcount: A:0.20, C:0.30, G:0.16, T:0.34
Consensus pattern (40 bp):
TGATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
Found at i:92440347 original size:20 final size:20
Alignment explanation
Indices: 92440288--92440348 Score: 52
Period size: 20 Copynumber: 3.0 Consensus size: 20
92440278 TAATTATACA
*
92440288 TGATTGCACATACATGCCCC
1 TGATTGCACATACGTGCCCC
* * ** *
92440308 T-ATTTGTACTTTGGTACCCC
1 TGA-TTGCACATACGTGCCCC
92440328 TGATTGCACATACGTGCCCC
1 TGATTGCACATACGTGCCCC
92440348 T
1 T
92440349 ATTTGTTCGA
Statistics
Matches: 28, Mismatches: 11, Indels: 4
0.65 0.26 0.09
Matches are distributed among these distances:
19 1 0.04
20 26 0.93
21 1 0.04
ACGTcount: A:0.20, C:0.31, G:0.16, T:0.33
Consensus pattern (20 bp):
TGATTGCACATACGTGCCCC
Found at i:92440462 original size:20 final size:20
Alignment explanation
Indices: 92440397--92440462 Score: 62
Period size: 20 Copynumber: 3.3 Consensus size: 20
92440387 TTGTACTTCG
*
92440397 GTACCCATGATTGCACATAT
1 GTACCCATGATTGCACATAC
* * * *
92440417 GTGCCCATGCTTGTAC-TTC
1 GTACCCATGATTGCACATAC
*
92440436 AGTACCCTTGATTGCACATAC
1 -GTACCCATGATTGCACATAC
92440457 GTACCC
1 GTACCC
92440463 CTGTTTATAC
Statistics
Matches: 34, Mismatches: 10, Indels: 4
0.71 0.21 0.08
Matches are distributed among these distances:
19 1 0.03
20 31 0.91
21 2 0.06
ACGTcount: A:0.23, C:0.30, G:0.17, T:0.30
Consensus pattern (20 bp):
GTACCCATGATTGCACATAC
Found at i:92440524 original size:21 final size:21
Alignment explanation
Indices: 92440500--92440550 Score: 57
Period size: 24 Copynumber: 2.3 Consensus size: 21
92440490 AGTAAAATAA
92440500 AAGTTACATTCAATTGATGAT
1 AAGTTACATTCAATTGATGAT
* *
92440521 AAGTTAAAAGATTTAATTGATGAT
1 AAGTT---ACATTCAATTGATGAT
92440545 AAGTTA
1 AAGTTA
92440551 AAAGATTTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
21 6 0.24
24 19 0.76
ACGTcount: A:0.43, C:0.04, G:0.16, T:0.37
Consensus pattern (21 bp):
AAGTTACATTCAATTGATGAT
Found at i:92440540 original size:24 final size:24
Alignment explanation
Indices: 92440511--92440559 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
92440501 AGTTACATTC
92440511 AATTGATGATAAGTTAAAAGATTT
1 AATTGATGATAAGTTAAAAGATTT
92440535 AATTGATGATAAGTTAAAAGATTT
1 AATTGATGATAAGTTAAAAGATTT
92440559 A
1 A
92440560 CTATGTTCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.47, C:0.00, G:0.16, T:0.37
Consensus pattern (24 bp):
AATTGATGATAAGTTAAAAGATTT
Found at i:92441380 original size:65 final size:65
Alignment explanation
Indices: 92441294--92441477 Score: 253
Period size: 65 Copynumber: 2.8 Consensus size: 65
92441284 TAGGGCATAC
** ** *
92441294 ATACTGACTTGCATCACACGGCCGAGGACACGCCCGTCTG-CTAGGCCGTGTGAAAATTAAAGAG
1 ATACTGACTTGGGTCACACGGCCGACCACACACCCGTCTGTCTA-GCCGTGTGAAAATTAAAGAG
92441358 T
65 T
* *
92441359 ATATTGACTTGGGTCACACGGCCGACCACACACCCGTGTGTCTAGCCGTGTGAAAATTAAAGAGT
1 ATACTGACTTGGGTCACACGGCCGACCACACACCCGTCTGTCTAGCCGTGTGAAAATTAAAGAGT
* * *
92441424 ATACTGACTTGGGTCACATGGCCGACCACAAACCCGTGTGTCTAGCCCGTGTGA
1 ATACTGACTTGGGTCACACGGCCGACCACACACCCGTCTGTCTAG-CCGTGTGA
92441478 CCTTCGAAAT
Statistics
Matches: 107, Mismatches: 10, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
65 96 0.90
66 11 0.10
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.22
Consensus pattern (65 bp):
ATACTGACTTGGGTCACACGGCCGACCACACACCCGTCTGTCTAGCCGTGTGAAAATTAAAGAGT
Found at i:92464171 original size:27 final size:27
Alignment explanation
Indices: 92464141--92464194 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
92464131 TCATACAACC
* *
92464141 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
92464168 CATGTAACAATAATTTTCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
92464195 TTGCATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.06, T:0.41
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:92473397 original size:43 final size:43
Alignment explanation
Indices: 92473329--92473411 Score: 121
Period size: 43 Copynumber: 1.9 Consensus size: 43
92473319 ACATGAATCA
* * **
92473329 CATCCATTATGAACTCAGACTTCTCAATGAGCTCGGATGCTCG
1 CATCCATAATGAACTCAGACCTCTCAACAAGCTCGGATGCTCG
*
92473372 CATCCATAATGAACTCGGACCTCTCAACAAGCTCGGATGC
1 CATCCATAATGAACTCAGACCTCTCAACAAGCTCGGATGC
92473412 CACACATCTC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (43 bp):
CATCCATAATGAACTCAGACCTCTCAACAAGCTCGGATGCTCG
Found at i:92480901 original size:15 final size:15
Alignment explanation
Indices: 92480866--92480907 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
92480856 TGAGGTTAGG
92480866 AGTTTTAGGGTT-TA
1 AGTTTTAGGGTTCTA
*
92480880 CGATTTTAGGGTTCTA
1 AG-TTTTAGGGTTCTA
92480896 AGTTTT-GGGTTC
1 AGTTTTAGGGTTC
92480908 ATGGTTCGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
14 7 0.29
15 14 0.58
16 3 0.12
ACGTcount: A:0.17, C:0.07, G:0.29, T:0.48
Consensus pattern (15 bp):
AGTTTTAGGGTTCTA
Found at i:92499160 original size:59 final size:59
Alignment explanation
Indices: 92499068--92499185 Score: 227
Period size: 59 Copynumber: 2.0 Consensus size: 59
92499058 ATTTAATCAA
92499068 GATGATATAATTGTGTTGGATTAATTATACCTTTTTAACTTAGAAATATTAAATTCGTG
1 GATGATATAATTGTGTTGGATTAATTATACCTTTTTAACTTAGAAATATTAAATTCGTG
*
92499127 GATGATCTAATTGTGTTGGATTAATTATACCTTTTTAACTTAGAAATATTAAATTCGTG
1 GATGATATAATTGTGTTGGATTAATTATACCTTTTTAACTTAGAAATATTAAATTCGTG
92499186 CTTATGCTGT
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.33, C:0.08, G:0.15, T:0.44
Consensus pattern (59 bp):
GATGATATAATTGTGTTGGATTAATTATACCTTTTTAACTTAGAAATATTAAATTCGTG
Found at i:92505884 original size:46 final size:46
Alignment explanation
Indices: 92505822--92506081 Score: 262
Period size: 46 Copynumber: 5.6 Consensus size: 46
92505812 GCCCATAAAC
92505822 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGT
* * * ** * *
92505868 GAACTCGGACTTAACTCAACGAGTTCGGATGCCTAGTTATAT-C-TCA-C
1 GAACTCGGACTCAACTCAACGAGCTCGG--GCGT--TTGCATCCATAAGT
92505915 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGT
* * * ** * *
92505961 GAACTCGGACTTAACTCAACGAGTTCGGATGCCTAGTTATAT-C-TCA-C
1 GAACTCGGACTCAACTCAACGAGCTCGG--GCGT--TTGCATCCATAAGT
92506008 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGT
* *
92506054 GAACTCGGACTTAACTCAACGAGTTCGG
1 GAACTCGGACTCAACTCAACGAGCTCGG
92506082 ATGCCTAGTT
Statistics
Matches: 170, Mismatches: 30, Indels: 28
0.75 0.13 0.12
Matches are distributed among these distances:
43 8 0.05
44 2 0.01
45 10 0.06
46 78 0.46
47 52 0.31
48 10 0.06
49 2 0.01
50 8 0.05
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGT
Found at i:92505925 original size:47 final size:47
Alignment explanation
Indices: 92505868--92506129 Score: 279
Period size: 47 Copynumber: 5.6 Consensus size: 47
92505858 ATCCATAAGT
*
92505868 GAACTCGGACTTAACTCAACGAGTTCGGATGCCTAGTTATATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTATATCTCAC
* * ** * *
92505915 GAACTCGGACTCAACTCAACGAGCTCGG--GCGT--TTGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTATAT-C-TCA-C
*
92505961 GAACTCGGACTTAACTCAACGAGTTCGGATGCCTAGTTATATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTATATCTCAC
* * ** * *
92506008 GAACTCGGACTCAACTCAACGAGCTCGG--GCGT--TTGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTATAT-C-TCA-C
*
92506054 GAACTCGGACTTAACTCAACGAGTTCGGATGCCTAGTTATATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTATATCTCAC
92506101 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
92506130 ACTCAACCAT
Statistics
Matches: 172, Mismatches: 29, Indels: 28
0.75 0.13 0.12
Matches are distributed among these distances:
43 8 0.05
44 2 0.01
45 10 0.06
46 52 0.30
47 80 0.47
48 10 0.06
49 2 0.01
50 8 0.05
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTATATCTCAC
Found at i:92505979 original size:93 final size:93
Alignment explanation
Indices: 92505820--92506128 Score: 609
Period size: 93 Copynumber: 3.3 Consensus size: 93
92505810 CTGCCCATAA
92505820 ACGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTTAACTC
1 ACGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTTAACTC
92505885 AACGAGTTCGGATGCCTAGTTATATCTC
66 AACGAGTTCGGATGCCTAGTTATATCTC
92505913 ACGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTTAACTC
1 ACGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTTAACTC
92505978 AACGAGTTCGGATGCCTAGTTATATCTC
66 AACGAGTTCGGATGCCTAGTTATATCTC
92506006 ACGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTTAACTC
1 ACGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTTAACTC
92506071 AACGAGTTCGGATGCCTAGTTATATCTC
66 AACGAGTTCGGATGCCTAGTTATATCTC
*
92506099 ACGAACTCGGACTCAACTCAACGAGTTCGG
1 ACGAACTCGGACTCAACTCAACGAGCTCGG
92506129 AACTCAACCA
Statistics
Matches: 215, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
93 215 1.00
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (93 bp):
ACGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTTAACTC
AACGAGTTCGGATGCCTAGTTATATCTC
Found at i:92516917 original size:27 final size:27
Alignment explanation
Indices: 92516887--92517064 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
92516877 ATATTGAGTC
* * * *
92516887 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
92516914 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
92516941 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
92516969 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
92516996 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
92517023 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
92517050 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
92517065 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:92517026 original size:82 final size:81
Alignment explanation
Indices: 92516908--92517063 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
92516898 TGCTATATAA
* *
92516908 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
92516973 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
92516990 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
92517054 CACTTAGTGC
65 CACTTAGTGC
92517064 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:92524967 original size:21 final size:20
Alignment explanation
Indices: 92524943--92525015 Score: 58
Period size: 21 Copynumber: 3.5 Consensus size: 20
92524933 AGTAAATGTT
92524943 ATATAATAAAATATAATATAA
1 ATAT-ATAAAATATAATATAA
*
92524964 ATATATAGGAAA-ATAATATATG
1 ATATATA--AAATATAATATA-A
* * *
92524986 ATAAATAAAAATTTTATATAA
1 ATATAT-AAAATATAATATAA
92525007 ATATATAAA
1 ATATATAAA
92525016 TAGTATTTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 11
0.71 0.10 0.19
Matches are distributed among these distances:
20 6 0.15
21 20 0.49
22 14 0.34
23 1 0.02
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (20 bp):
ATATATAAAATATAATATAA
Found at i:92527199 original size:205 final size:205
Alignment explanation
Indices: 92526745--92527328 Score: 967
Period size: 205 Copynumber: 2.8 Consensus size: 205
92526735 AAATCTGCTT
* *
92526745 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAT
1 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACAC
* *
92526810 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTCGCTCCTTGTAAGCACAAGAATGCCAAATCATCTT
* * *
92526875 GGATCTTGCTTCAGT-GAAA-TTATCTGAAGGTGAGATCTGCTATGTATCTGCTCCTCATCGAAG
131 GGATC-TCCTTCAGTATAAACTTA--TGAAGGTGAGATCTGCTATGTATCTGCTCCCCATCGAAG
92526938 TGGAGATGCCAGA
193 TGGAGATGCCAGA
* *
92526951 CTTCAATTTGTTCTCTGACAATATAGAGATGTCAAATCATCTTAGATTTGCTTCATCGTAAACAC
1 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACAC
*
92527016 GTGAAAGCCAAATCAGCTATGTCTTCGATTCGCTCCTTGTAAGCACAAGGATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTCGCTCCTTGTAAGCACAAGAATGCCAAATCATCTT
* *
92527081 GGATCTCCTTCAGTATAAACTTATGAAGGTGAAATCTGCTATGTATCTGCTCCCCGTCGAAGTGG
131 GGATCTCCTTCAGTATAAACTTATGAAGGTGAGATCTGCTATGTATCTGCTCCCCATCGAAGTGG
92527146 AGATGCCAGA
196 AGATGCCAGA
*
92527156 CTTTAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACAC
1 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACAC
*
92527221 GTGAAAGCCAAATCAGCTATGTCTTCGATTCGCTCTTTGTAAGCACAAGAATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTCGCTCCTTGTAAGCACAAGAATGCCAAATCATCTT
* *
92527286 GGATCTTCTTCAGTATAAACGTT-TGAAGGTGAGCTCTGCTATG
131 GGATCTCCTTCAGTATAAAC-TTATGAAGGTGAGATCTGCTATG
92527329 CTACGGCCTA
Statistics
Matches: 355, Mismatches: 20, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
205 219 0.62
206 133 0.37
207 3 0.01
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (205 bp):
CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTCGCTCCTTGTAAGCACAAGAATGCCAAATCATCTT
GGATCTCCTTCAGTATAAACTTATGAAGGTGAGATCTGCTATGTATCTGCTCCCCATCGAAGTGG
AGATGCCAGA
Found at i:92548213 original size:46 final size:46
Alignment explanation
Indices: 92548160--92548335 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
92548150 TATTTGGGCA
92548160 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
92548206 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
92548251 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
92548299 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
92548336 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:92548315 original size:93 final size:93
Alignment explanation
Indices: 92548156--92548327 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
92548146 GGGATATTTG
* *
92548156 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
92548221 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
92548249 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
92548314 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
92548328 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:92550133 original size:12 final size:12
Alignment explanation
Indices: 92550116--92550158 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
92550106 GGCCAACTGT
92550116 TCTTGCAATTGG
1 TCTTGCAATTGG
**
92550128 TCTTGC-ATATCC
1 TCTTGCAAT-TGG
92550140 TCTTGCAATTGG
1 TCTTGCAATTGG
92550152 TCTTGCA
1 TCTTGCA
92550159 TATCCTTTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
11 2 0.08
12 21 0.84
13 2 0.08
ACGTcount: A:0.16, C:0.23, G:0.19, T:0.42
Consensus pattern (12 bp):
TCTTGCAATTGG
Found at i:92550148 original size:24 final size:24
Alignment explanation
Indices: 92550116--92550174 Score: 109
Period size: 24 Copynumber: 2.5 Consensus size: 24
92550106 GGCCAACTGT
92550116 TCTTGCAATTGGTCTTGCATATCC
1 TCTTGCAATTGGTCTTGCATATCC
92550140 TCTTGCAATTGGTCTTGCATATCC
1 TCTTGCAATTGGTCTTGCATATCC
*
92550164 TTTTGCAATTG
1 TCTTGCAATTG
92550175 TTCGAACCTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.17, C:0.22, G:0.17, T:0.44
Consensus pattern (24 bp):
TCTTGCAATTGGTCTTGCATATCC
Found at i:92553953 original size:18 final size:17
Alignment explanation
Indices: 92553927--92553960 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
92553917 AATGATTATA
92553927 AAATAATATATAATACAT
1 AAATAATATAT-ATACAT
*
92553945 AAATGATATATATACA
1 AAATAATATATATACA
92553961 ATATAAAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.59, C:0.06, G:0.03, T:0.32
Consensus pattern (17 bp):
AAATAATATATATACAT
Found at i:92554426 original size:10 final size:10
Alignment explanation
Indices: 92554395--92554460 Score: 60
Period size: 10 Copynumber: 6.0 Consensus size: 10
92554385 TACATAACAT
*
92554395 ATAAAAGATA
1 ATAAAATATA
*
92554405 AGTAATATATA
1 A-TAAAATATA
92554416 ATAAAATATA
1 ATAAAATATA
92554426 ATAAATGTTATATA
1 ATAAA----ATATA
92554440 ATAAAATATA
1 ATAAAATATA
92554450 ATATAAATATA
1 ATA-AAATATA
92554461 TAGGAAAATA
Statistics
Matches: 47, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
10 22 0.47
11 15 0.32
14 10 0.21
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (10 bp):
ATAAAATATA
Found at i:92554522 original size:24 final size:25
Alignment explanation
Indices: 92554489--92554558 Score: 63
Period size: 26 Copynumber: 2.8 Consensus size: 25
92554479 TAAATAAAAA
92554489 TTTTATATAAATATATAAATAG-TAT
1 TTTTA-ATAAATATATAAATAGTTAT
** *
92554514 TTTTAATAATAATATATGTATAGTTTT
1 TTTTAAT-A-AATATATAAATAGTTAT
*
92554541 TTTTAA-AAATAAATAAAT
1 TTTTAATAAATATATAAAT
92554559 TATATATATA
Statistics
Matches: 36, Mismatches: 6, Indels: 7
0.73 0.12 0.14
Matches are distributed among these distances:
24 10 0.28
25 7 0.19
26 11 0.31
27 8 0.22
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (25 bp):
TTTTAATAAATATATAAATAGTTAT
Found at i:92554536 original size:26 final size:27
Alignment explanation
Indices: 92554498--92554552 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
92554488 ATTTTATATA
*
92554498 AATATATAAATAG-TATTTTTAATAAT
1 AATATATAAATAGTTATTTTTAAAAAT
** *
92554524 AATATATGTATAGTTTTTTTTAAAAAT
1 AATATATAAATAGTTATTTTTAAAAAT
92554551 AA
1 AA
92554553 ATAAATTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 11 0.46
27 13 0.54
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (27 bp):
AATATATAAATAGTTATTTTTAAAAAT
Found at i:92558841 original size:47 final size:47
Alignment explanation
Indices: 92558784--92559134 Score: 603
Period size: 47 Copynumber: 7.4 Consensus size: 47
92558774 ATTGATGTAC
* * * * *
92558784 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
92558831 AAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
92558880 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
92558927 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
92558974 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
92559021 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
* * *
92559068 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
*
92559115 AAGTGTATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
92559135 TCCCGAAGGG
Statistics
Matches: 293, Mismatches: 9, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
47 250 0.85
49 43 0.15
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
Found at i:92561127 original size:28 final size:28
Alignment explanation
Indices: 92561096--92561187 Score: 89
Period size: 28 Copynumber: 3.3 Consensus size: 28
92561086 TCTCTTGCGA
*
92561096 TTCTTTCTCTCCTCTACCTT-TTTTGTTT
1 TTCTTTCTCTCCTCT-CCTTCTTTTGTGT
* *
92561124 TTCTTTCACTTCC-CTGCTTCTTTTGTGT
1 TTCTTTCTC-TCCTCTCCTTCTTTTGTGT
* * * *
92561152 TTCTTTCTCTCCTCTGCTTCTCTGGTCT
1 TTCTTTCTCTCCTCTCCTTCTTTTGTGT
92561180 TTCTTTCT
1 TTCTTTCT
92561188 TTTCCCTCCT
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
27 6 0.11
28 45 0.83
29 3 0.06
ACGTcount: A:0.02, C:0.30, G:0.08, T:0.60
Consensus pattern (28 bp):
TTCTTTCTCTCCTCTCCTTCTTTTGTGT
Found at i:92565944 original size:992 final size:992
Alignment explanation
Indices: 92564020--92566005 Score: 3972
Period size: 992 Copynumber: 2.0 Consensus size: 992
92564010 AAAATCACAT
92564020 ATAGCTCGTACAATGCCATATCTCAAATATGGTCTTACATGTTATCACATATCGATTCCACTGTC
1 ATAGCTCGTACAATGCCATATCTCAAATATGGTCTTACATGTTATCACATATCGATTCCACTGTC
92564085 CCAGATAGGGTCTTATACGAAATCATATAACGATGTCAATGTCCCAGACATGGTCTTACATGTGA
66 CCAGATAGGGTCTTATACGAAATCATATAACGATGTCAATGTCCCAGACATGGTCTTACATGTGA
92564150 TCACATCCCACTAATGTCATGGCATTTGTATCCTATACTATTTCTAAGGTTCGTACGGGTCTTTC
131 TCACATCCCACTAATGTCATGGCATTTGTATCCTATACTATTTCTAAGGTTCGTACGGGTCTTTC
92564215 GAATGTTGTAACCCTGTCGATACTCGCTCGAATTCGATTATTCAGTATTCAATACAATTCAATGA
196 GAATGTTGTAACCCTGTCGATACTCGCTCGAATTCGATTATTCAGTATTCAATACAATTCAATGA
92564280 TAAATAAATGCTTATAATTTAATTTAAAGAAATTTATTTGCTTATGAACTTACCTCATATATACG
261 TAAATAAATGCTTATAATTTAATTTAAAGAAATTTATTTGCTTATGAACTTACCTCATATATACG
92564345 ATGAATGGATTAGATTGACTACTCAACAACTTTTGATTTCCCCCGATCTAAATCTGATTTCTTTC
326 ATGAATGGATTAGATTGACTACTCAACAACTTTTGATTTCCCCCGATCTAAATCTGATTTCTTTC
92564410 TTTCTTGATCTAAATATATTCAAAATTAACTTGTTTATTCATCTATTTACTCAATTAAACCCAAA
391 TTTCTTGATCTAAATATATTCAAAATTAACTTGTTTATTCATCTATTTACTCAATTAAACCCAAA
92564475 ACACAGTTTAAGGCATTTTTACACATTTACCCCAAGAATTTCACAATTTTTACAACCAAGTCCTC
456 ACACAGTTTAAGGCATTTTTACACATTTACCCCAAGAATTTCACAATTTTTACAACCAAGTCCTC
92564540 AATTCACAAAACACAAAAATTTCACATAATTTCACCCCAATTTAAACTATTCGAATTTCACATGG
521 AATTCACAAAACACAAAAATTTCACATAATTTCACCCCAATTTAAACTATTCGAATTTCACATGG
92564605 GTCCTTAACTGCCGATATTTATCATTTATTTCACATTTCAACCACCCAATTTACAAAATTCACAA
586 GTCCTTAACTGCCGATATTTATCATTTATTTCACATTTCAACCACCCAATTTACAAAATTCACAA
92564670 TTTAATCTTTAACTTGTATTTTCTTCAAAAATCACTTGATAAAACGTGAAAATCTATCATTTATC
651 TTTAATCTTTAACTTGTATTTTCTTCAAAAATCACTTGATAAAACGTGAAAATCTATCATTTATC
92564735 TATCATTTTTCATCATCAACTATCAAAAAACTATGGATTCATCAATACAAATTTACAAAATCACC
716 TATCATTTTTCATCATCAACTATCAAAAAACTATGGATTCATCAATACAAATTTACAAAATCACC
92564800 AACAAACTCAAAAATTAGGGAACGAGCTAGCTAGTACTCAAAGCAACGATCACAAAAACGTAGAA
781 AACAAACTCAAAAATTAGGGAACGAGCTAGCTAGTACTCAAAGCAACGATCACAAAAACGTAGAA
92564865 ATCATCAAAAATGGATCAAAAATCATACCTTAATATGAACCCTAGAATGCTTTAAAGCACTATTT
846 ATCATCAAAAATGGATCAAAAATCATACCTTAATATGAACCCTAGAATGCTTTAAAGCACTATTT
92564930 TCTTCTTTATTTTCGGTTGAAAATGGAAGAGATGAACAAAAATTTTAGCTTTGGTTTTGTTAAAT
911 TCTTCTTTATTTTCGGTTGAAAATGGAAGAGATGAACAAAAATTTTAGCTTTGGTTTTGTTAAAT
92564995 TATAATTTATTTAGCTA
976 TATAATTTATTTAGCTA
92565012 ATAGCTCGTACAATGCCATATCTCAAATATGGTCTTACATGTTATCACATATCGATTCCACTGTC
1 ATAGCTCGTACAATGCCATATCTCAAATATGGTCTTACATGTTATCACATATCGATTCCACTGTC
92565077 CCAGATAGGGTCTTATACGAAATCATATAACGATGTCAATGTCCCAGACATGGTCTTACATGTGA
66 CCAGATAGGGTCTTATACGAAATCATATAACGATGTCAATGTCCCAGACATGGTCTTACATGTGA
92565142 TCACATCCCACTAATGTCATGGCATTTGTATCCTATACTATTTCTAAGGTTCGTACGGGTCTTTC
131 TCACATCCCACTAATGTCATGGCATTTGTATCCTATACTATTTCTAAGGTTCGTACGGGTCTTTC
92565207 GAATGTTGTAACCCTGTCGATACTCGCTCGAATTCGATTATTCAGTATTCAATACAATTCAATGA
196 GAATGTTGTAACCCTGTCGATACTCGCTCGAATTCGATTATTCAGTATTCAATACAATTCAATGA
92565272 TAAATAAATGCTTATAATTTAATTTAAAGAAATTTATTTGCTTATGAACTTACCTCATATATACG
261 TAAATAAATGCTTATAATTTAATTTAAAGAAATTTATTTGCTTATGAACTTACCTCATATATACG
92565337 ATGAATGGATTAGATTGACTACTCAACAACTTTTGATTTCCCCCGATCTAAATCTGATTTCTTTC
326 ATGAATGGATTAGATTGACTACTCAACAACTTTTGATTTCCCCCGATCTAAATCTGATTTCTTTC
92565402 TTTCTTGATCTAAATATATTCAAAATTAACTTGTTTATTCATCTATTTACTCAATTAAACCCAAA
391 TTTCTTGATCTAAATATATTCAAAATTAACTTGTTTATTCATCTATTTACTCAATTAAACCCAAA
92565467 ACACAGTTTAAGGCATTTTTACACATTTACCCCAAGAATTTCACAATTTTTACAACCAAGTCCTC
456 ACACAGTTTAAGGCATTTTTACACATTTACCCCAAGAATTTCACAATTTTTACAACCAAGTCCTC
92565532 AATTCACAAAACACAAAAATTTCACATAATTTCACCCCAATTTAAACTATTCGAATTTCACATGG
521 AATTCACAAAACACAAAAATTTCACATAATTTCACCCCAATTTAAACTATTCGAATTTCACATGG
92565597 GTCCTTAACTGCCGATATTTATCATTTATTTCACATTTCAACCACCCAATTTACAAAATTCACAA
586 GTCCTTAACTGCCGATATTTATCATTTATTTCACATTTCAACCACCCAATTTACAAAATTCACAA
92565662 TTTAATCTTTAACTTGTATTTTCTTCAAAAATCACTTGATAAAACGTGAAAATCTATCATTTATC
651 TTTAATCTTTAACTTGTATTTTCTTCAAAAATCACTTGATAAAACGTGAAAATCTATCATTTATC
92565727 TATCATTTTTCATCATCAACTATCAAAAAACTATGGATTCATCAATACAAATTTACAAAATCACC
716 TATCATTTTTCATCATCAACTATCAAAAAACTATGGATTCATCAATACAAATTTACAAAATCACC
92565792 AACAAACTCAAAAATTAGGGAACGAGCTAGCTAGTACTCAAAGCAACGATCACAAAAACGTAGAA
781 AACAAACTCAAAAATTAGGGAACGAGCTAGCTAGTACTCAAAGCAACGATCACAAAAACGTAGAA
92565857 ATCATCAAAAATGGATCAAAAATCATACCTTAATATGAACCCTAGAATGCTTTAAAGCACTATTT
846 ATCATCAAAAATGGATCAAAAATCATACCTTAATATGAACCCTAGAATGCTTTAAAGCACTATTT
92565922 TCTTCTTTATTTTCGGTTGAAAATGGAAGAGATGAACAAAAATTTTAGCTTTGGTTTTGTTAAAT
911 TCTTCTTTATTTTCGGTTGAAAATGGAAGAGATGAACAAAAATTTTAGCTTTGGTTTTGTTAAAT
92565987 TATAATTTATTTAGCTA
976 TATAATTTATTTAGCTA
92566004 AT
1 AT
92566006 TACCAAAATG
Statistics
Matches: 994, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
992 994 1.00
ACGTcount: A:0.35, C:0.20, G:0.10, T:0.35
Consensus pattern (992 bp):
ATAGCTCGTACAATGCCATATCTCAAATATGGTCTTACATGTTATCACATATCGATTCCACTGTC
CCAGATAGGGTCTTATACGAAATCATATAACGATGTCAATGTCCCAGACATGGTCTTACATGTGA
TCACATCCCACTAATGTCATGGCATTTGTATCCTATACTATTTCTAAGGTTCGTACGGGTCTTTC
GAATGTTGTAACCCTGTCGATACTCGCTCGAATTCGATTATTCAGTATTCAATACAATTCAATGA
TAAATAAATGCTTATAATTTAATTTAAAGAAATTTATTTGCTTATGAACTTACCTCATATATACG
ATGAATGGATTAGATTGACTACTCAACAACTTTTGATTTCCCCCGATCTAAATCTGATTTCTTTC
TTTCTTGATCTAAATATATTCAAAATTAACTTGTTTATTCATCTATTTACTCAATTAAACCCAAA
ACACAGTTTAAGGCATTTTTACACATTTACCCCAAGAATTTCACAATTTTTACAACCAAGTCCTC
AATTCACAAAACACAAAAATTTCACATAATTTCACCCCAATTTAAACTATTCGAATTTCACATGG
GTCCTTAACTGCCGATATTTATCATTTATTTCACATTTCAACCACCCAATTTACAAAATTCACAA
TTTAATCTTTAACTTGTATTTTCTTCAAAAATCACTTGATAAAACGTGAAAATCTATCATTTATC
TATCATTTTTCATCATCAACTATCAAAAAACTATGGATTCATCAATACAAATTTACAAAATCACC
AACAAACTCAAAAATTAGGGAACGAGCTAGCTAGTACTCAAAGCAACGATCACAAAAACGTAGAA
ATCATCAAAAATGGATCAAAAATCATACCTTAATATGAACCCTAGAATGCTTTAAAGCACTATTT
TCTTCTTTATTTTCGGTTGAAAATGGAAGAGATGAACAAAAATTTTAGCTTTGGTTTTGTTAAAT
TATAATTTATTTAGCTA
Found at i:92569013 original size:28 final size:27
Alignment explanation
Indices: 92568966--92569047 Score: 92
Period size: 28 Copynumber: 2.9 Consensus size: 27
92568956 TGGATGTTAC
92568966 ACTTCTCTTGTTTTTCTTTCTCTTCTTT
1 ACTTCTCTTG-TTTTCTTTCTCTTCTTT
* * * *
92568994 GCTTTTTTTGTGTTTCTTTCTCTCCTTT
1 ACTTCTCTTGT-TTTCTTTCTCTTCTTT
*
92569022 ACTTCTCTTGCTTTTCTTTGTCTTCT
1 ACTTCTCTTG-TTTTCTTTCTCTTCT
92569048 CTCCTTTCAT
Statistics
Matches: 43, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
27 1 0.02
28 41 0.95
29 1 0.02
ACGTcount: A:0.02, C:0.24, G:0.07, T:0.66
Consensus pattern (27 bp):
ACTTCTCTTGTTTTCTTTCTCTTCTTT
Found at i:92569301 original size:15 final size:15
Alignment explanation
Indices: 92569281--92569331 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
92569271 TATTTATTTG
*
92569281 TTTCTCTTGCTTTTC
1 TTTCTCTTACTTTTC
* *
92569296 TTTCTC-TACTCTAC
1 TTTCTCTTACTTTTC
92569310 -TTCTCTTACTTTTC
1 TTTCTCTTACTTTTC
92569324 TTTCTCTT
1 TTTCTCTT
92569332 CTCTGCTTTC
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
13 5 0.17
14 11 0.38
15 13 0.45
ACGTcount: A:0.06, C:0.29, G:0.02, T:0.63
Consensus pattern (15 bp):
TTTCTCTTACTTTTC
Found at i:92569322 original size:28 final size:28
Alignment explanation
Indices: 92569282--92569335 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
92569272 ATTTATTTGT
*
92569282 TTCTCTTGCTTTTCTTTCTCTACTCTAC
1 TTCTCTTACTTTTCTTTCTCTACTCTAC
*
92569310 TTCTCTTACTTTTCTTTCTCTTCTCT
1 TTCTCTTACTTTTCTTTCTCTACTCT
92569336 GCTTTCACAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.06, C:0.31, G:0.02, T:0.61
Consensus pattern (28 bp):
TTCTCTTACTTTTCTTTCTCTACTCTAC
Found at i:92570512 original size:28 final size:28
Alignment explanation
Indices: 92570480--92570563 Score: 100
Period size: 28 Copynumber: 3.0 Consensus size: 28
92570470 CTTTATCAAC
*
92570480 CTCTTGTTTTACTTTCTCTTCTCTGCTT
1 CTCTTGTTTTACTTTCTCTTCTCTACTT
* *
92570508 CTCTTGCTTTTA-TTTTTCTCCTCTACTT
1 CTCTTG-TTTTACTTTCTCTTCTCTACTT
*
92570536 CTCTTGTATTT-CTTTCTTTTCTCTACTT
1 CTCTTGT-TTTACTTTCTCTTCTCTACTT
92570564 TTACCTAACC
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
27 1 0.02
28 41 0.87
29 5 0.11
ACGTcount: A:0.06, C:0.27, G:0.05, T:0.62
Consensus pattern (28 bp):
CTCTTGTTTTACTTTCTCTTCTCTACTT
Found at i:92602041 original size:19 final size:20
Alignment explanation
Indices: 92602017--92602054 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
92602007 GGTACCACCA
92602017 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
92602036 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
92602055 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:92602390 original size:93 final size:93
Alignment explanation
Indices: 92602283--92602453 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
92602273 GCCCCTAAGT
* *
92602283 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
92602348 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
92602376 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
92602441 CGAGTTCGGATGC
66 CGAGTTCGGATGC
92602454 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:92602450 original size:46 final size:46
Alignment explanation
Indices: 92602278--92602450 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
92602268 AACCCGCCCC
* * *
92602278 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
92602324 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
92602372 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
92602417 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
92602451 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:92602907 original size:30 final size:30
Alignment explanation
Indices: 92602873--92602932 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
92602863 ATTTAATACG
92602873 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
92602903 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
92602933 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:92609920 original size:46 final size:46
Alignment explanation
Indices: 92609853--92609999 Score: 142
Period size: 46 Copynumber: 3.2 Consensus size: 46
92609843 CGCCCCTAAG
92609853 TGAACTCGGACTCAACTCAACGAGCTCGAG-CGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGCTCGAGACGTT-GCATCCATAAA
* * * *
92609899 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-T-CA
1 TGAACTCGGACTCAACTCAACGAGCTC-GA-GAC--GTTGCATCCATAAA
* * *
92609946 CGAACTCGGACTCAACTCAACGAGCTC-AGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGCTCGAGAC-GTTGCATCCATAAA
92609992 TGAACTCG
1 TGAACTCG
92610000 CATATAACGG
Statistics
Matches: 82, Mismatches: 11, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
43 6 0.07
44 3 0.04
45 2 0.02
46 33 0.40
47 28 0.34
48 2 0.02
49 2 0.02
50 3 0.04
51 3 0.04
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGCTCGAGACGTTGCATCCATAAA
Found at i:92613973 original size:27 final size:26
Alignment explanation
Indices: 92613932--92613994 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 26
92613922 NNNNNNNNNN
92613932 AGCCACCAGGACAGAT-ATATGTGGCAG
1 AGCCACCA-GACAGATAAT-TGTGGCAG
*
92613959 AGCCACCAGATCAGATAATTGTGGCAT
1 AGCCACCAGA-CAGATAATTGTGGCAG
92613986 AGCCACCAG
1 AGCCACCAG
92613995 GACGCTTCCT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
26 2 0.06
27 29 0.88
28 2 0.06
ACGTcount: A:0.33, C:0.25, G:0.25, T:0.16
Consensus pattern (26 bp):
AGCCACCAGACAGATAATTGTGGCAG
Found at i:92620587 original size:5 final size:5
Alignment explanation
Indices: 92620572--92620604 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
92620562 GAATACTGTG
*
92620572 AAAAT AGAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
92620605 GAACACACAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:92626743 original size:40 final size:39
Alignment explanation
Indices: 92626645--92626907 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
92626635 TCCTCGTTCA
* * * *
92626645 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
92626684 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
92626723 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
92626763 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
92626803 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
92626843 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
92626884 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
92626908 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:92626867 original size:120 final size:119
Alignment explanation
Indices: 92626645--92626907 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 119
92626635 TCCTCGTTCA
* * *
92626645 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
92626710 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * *
92626763 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
92626828 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
92626884 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
92626908 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.31
120 75 0.62
121 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:92626916 original size:41 final size:41
Alignment explanation
Indices: 92626839--92626916 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
92626829 TTTGTATCTC
* * *
92626839 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
92626880 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
92626917 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:92636044 original size:13 final size:14
Alignment explanation
Indices: 92636016--92636051 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
92636006 CCAATTTGTG
92636016 AAAATAGAATAAAAT
1 AAAATA-AATAAAAT
92636031 AAAATAAA-AAAAT
1 AAAATAAATAAAAT
92636044 AAAATAAA
1 AAAATAAA
92636052 GAACACATAG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 13 0.62
14 2 0.10
15 6 0.29
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.17
Consensus pattern (14 bp):
AAAATAAATAAAAT
Found at i:92638772 original size:61 final size:62
Alignment explanation
Indices: 92638675--92638799 Score: 225
Period size: 61 Copynumber: 2.0 Consensus size: 62
92638665 AACATAGCAG
*
92638675 TCGCCAGAGTGATTTGCTCAATCAATTGTTCAGTCATTACCAATTAACATGAAATTTTAAAAT
1 TCGCCAGAGTGA-TTACTCAATCAATTGTTCAGTCATTACCAATTAACATGAAATTTTAAAAT
92638738 TCGCCAGAGTGA-TACTCAATCAATTGTTCAGTCATTACCAATTAACATGAAATTTTAAAAT
1 TCGCCAGAGTGATTACTCAATCAATTGTTCAGTCATTACCAATTAACATGAAATTTTAAAAT
92638799 T
1 T
92638800 TTATGGAACA
Statistics
Matches: 61, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
61 49 0.80
63 12 0.20
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.34
Consensus pattern (62 bp):
TCGCCAGAGTGATTACTCAATCAATTGTTCAGTCATTACCAATTAACATGAAATTTTAAAAT
Found at i:92641976 original size:33 final size:33
Alignment explanation
Indices: 92641934--92642099 Score: 197
Period size: 33 Copynumber: 5.0 Consensus size: 33
92641924 AGGCAAACAG
* * *
92641934 AATGATGAAGATGCCCCGATAGATGCTCCAATC
1 AATGATGAAGCTGCCCTGATAGATGTTCCAATC
* * * *
92641967 AATGATGAAGCTTCGCTGATAAATGTTCCAACC
1 AATGATGAAGCTGCCCTGATAGATGTTCCAATC
*
92642000 ATTGATGAAGCTGCCCTGATAGATGTTCCAATC
1 AATGATGAAGCTGCCCTGATAGATGTTCCAATC
* * *
92642033 AATTATGGAGCTACCCTGATAGATGTTCCAATC
1 AATGATGAAGCTGCCCTGATAGATGTTCCAATC
* * * *
92642066 ATTGATGAAGTTGCCTTTATAGATGTTCCAATC
1 AATGATGAAGCTGCCCTGATAGATGTTCCAATC
92642099 A
1 A
92642100 CTTATGTTGA
Statistics
Matches: 110, Mismatches: 23, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 110 1.00
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (33 bp):
AATGATGAAGCTGCCCTGATAGATGTTCCAATC
Found at i:92642052 original size:66 final size:66
Alignment explanation
Indices: 92641936--92642105 Score: 223
Period size: 66 Copynumber: 2.6 Consensus size: 66
92641926 GCAAACAGAA
* * * * *
92641936 TGATGAAGATGCCCCGATAGATGCTCCAATCAATGATGAAGCTTCGCTGATAAATGTTCCAACCA
1 TGATGAAGATGCCCTGATAGATGTTCCAATCAATTATGAAGCTACCCTGATAAATGTTCCAACCA
92642001 T
66 T
* * * *
92642002 TGATGAAGCTGCCCTGATAGATGTTCCAATCAATTATGGAGCTACCCTGATAGATGTTCCAATCA
1 TGATGAAGATGCCCTGATAGATGTTCCAATCAATTATGAAGCTACCCTGATAAATGTTCCAACCA
92642067 T
66 T
* * * *
92642068 TGATGAAGTTGCCTTTATAGATGTTCCAATCACTTATG
1 TGATGAAGATGCCCTGATAGATGTTCCAATCAATTATG
92642106 TTGATAATTT
Statistics
Matches: 91, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
66 91 1.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (66 bp):
TGATGAAGATGCCCTGATAGATGTTCCAATCAATTATGAAGCTACCCTGATAAATGTTCCAACCA
T
Found at i:92647550 original size:17 final size:17
Alignment explanation
Indices: 92647530--92647565 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
92647520 TGTCGAGGAC
92647530 TAAGAAAAAATGAAATT
1 TAAGAAAAAATGAAATT
92647547 TAAGAAAAAATGAAATT
1 TAAGAAAAAATGAAATT
92647564 TA
1 TA
92647566 CATACCCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.64, C:0.00, G:0.11, T:0.25
Consensus pattern (17 bp):
TAAGAAAAAATGAAATT
Found at i:92648840 original size:13 final size:13
Alignment explanation
Indices: 92648822--92648849 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
92648812 CTTTTTTCCC
92648822 TTATTTAATTTAT
1 TTATTTAATTTAT
92648835 TTATTTAATTTAT
1 TTATTTAATTTAT
92648848 TT
1 TT
92648850 TTATTTTTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (13 bp):
TTATTTAATTTAT
Found at i:92650491 original size:16 final size:17
Alignment explanation
Indices: 92650470--92650517 Score: 62
Period size: 16 Copynumber: 2.8 Consensus size: 17
92650460 ATTGAGTCCA
92650470 TTTATTTTTATTTTGT-
1 TTTATTTTTATTTTGTG
*
92650486 TTTATTTTTATTATTTTG
1 TTTATTTTTATT-TTGTG
*
92650504 TTTATTTGTATTTT
1 TTTATTTTTATTTT
92650518 TCTAGACCTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 12 0.43
17 5 0.18
18 11 0.39
ACGTcount: A:0.15, C:0.00, G:0.06, T:0.79
Consensus pattern (17 bp):
TTTATTTTTATTTTGTG
Found at i:92650509 original size:18 final size:19
Alignment explanation
Indices: 92650477--92650515 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
92650467 CCATTTATTT
*
92650477 TTATTTTGTTTTATTTTTA
1 TTATTTTGTTTTATTTGTA
92650496 TTATTTTG-TTTATTTGTA
1 TTATTTTGTTTTATTTGTA
92650514 TT
1 TT
92650516 TTTCTAGACC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.15, C:0.00, G:0.08, T:0.77
Consensus pattern (19 bp):
TTATTTTGTTTTATTTGTA
Found at i:92656992 original size:33 final size:34
Alignment explanation
Indices: 92656914--92657005 Score: 107
Period size: 34 Copynumber: 2.7 Consensus size: 34
92656904 GTTTCAGTTA
* *
92656914 GGGCCTTAGCCCATTTTAGAATCAGAAACAGTGT
1 GGGCCTAAGCCCATTCTAGAATCAGAAACAGTGT
* * *
92656948 GGGCCTGAGCCCATTCTAGTAA-CAGTATCAGTG-
1 GGGCCTAAGCCCATTCTAG-AATCAGAAACAGTGT
*
92656981 GGGCCTAAGCCCATTATAGAATCAG
1 GGGCCTAAGCCCATTCTAGAATCAG
92657006 TGCAGTATGC
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
32 2 0.04
33 20 0.40
34 26 0.52
35 2 0.04
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (34 bp):
GGGCCTAAGCCCATTCTAGAATCAGAAACAGTGT
Found at i:92660390 original size:14 final size:14
Alignment explanation
Indices: 92660371--92660400 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
92660361 ATTAGAAAGA
92660371 AATTTCAATTAATC
1 AATTTCAATTAATC
92660385 AATTTCAATTAATC
1 AATTTCAATTAATC
92660399 AA
1 AA
92660401 CCTAGAGTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.40
Consensus pattern (14 bp):
AATTTCAATTAATC
Found at i:92663348 original size:16 final size:17
Alignment explanation
Indices: 92663298--92663348 Score: 59
Period size: 19 Copynumber: 2.9 Consensus size: 17
92663288 ATGGAAATAT
*
92663298 AATCTTTAAGGATATGC
1 AATCTTGAAGGATATGC
*
92663315 AATCTTAGATATGATATGC
1 AATCTT-GA-AGGATATGC
92663334 AATCTTGAA-GATATG
1 AATCTTGAAGGATATG
92663349 ATCTTGTAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
16 6 0.20
17 7 0.23
18 3 0.10
19 14 0.47
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (17 bp):
AATCTTGAAGGATATGC
Found at i:92663367 original size:22 final size:21
Alignment explanation
Indices: 92663308--92663350 Score: 72
Period size: 19 Copynumber: 2.1 Consensus size: 21
92663298 AATCTTTAAG
92663308 GATATGCAATCTT--AGATAT
1 GATATGCAATCTTGAAGATAT
92663327 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTTGAAGATAT
92663348 GAT
1 GAT
92663351 CTTGTAATCT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 13 0.59
21 9 0.41
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.35
Consensus pattern (21 bp):
GATATGCAATCTTGAAGATAT
Found at i:92667441 original size:44 final size:44
Alignment explanation
Indices: 92667382--92667720 Score: 214
Period size: 44 Copynumber: 7.7 Consensus size: 44
92667372 CAAGATTTGG
* *
92667382 CATCCCTGTGTTTATAGGAAACAAATCGAAGATAGTAGATCTGA
1 CATCCCTGTGTTTATAGGGAACAAATTGAAGATAGTAGATCTGA
* * * * *
92667426 CA-CTCCTGTGCTTATAGCGAAGCAGATTGAAGAT-TTCA-A-CATGG
1 CATC-CCTGTGTTTATAGGGAA-CAAATTGAAGATAGT-AGATC-TGA
* *
92667470 CATCCCTGTGTTTATAGGGAACAAGTTGAAGAT-TTCAG--CATGA
1 CATCCCTGTGTTTATAGGGAACAAATTGAAGATAGT-AGATC-TGA
* * * *
92667513 CATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGG
1 CATCCCTGTGTTTATAGGGAACAAATTGAAGATAGTAGATCTGA
* *
92667557 CATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGA
1 CATCCCTGTGTTTATAGGGAACAAATTGAAGATAGTAGATCTGA
* * * * * * * * *
92667601 CATTCTTGTGCTTA-CGCTGAAGCAGATCGAAGAT-TTCAG--CATGG
1 CATCCCTGTGTTTATAG-GGAA-CAAATTGAAGATAGT-AGATC-TGA
* * * *
92667645 CATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGG
1 CATCCCTGTGTTTATAGGGAACAAATTGAAGATAGTAGATCTGA
* * * * *
92667689 CATCCTTGTGCTTACAAGGAACAAATCGAAGA
1 CATCCCTGTGTTTATAGGGAACAAATTGAAGA
92667721 CATAGCTAAT
Statistics
Matches: 232, Mismatches: 46, Indels: 34
0.74 0.15 0.11
Matches are distributed among these distances:
43 68 0.29
44 138 0.59
45 26 0.11
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (44 bp):
CATCCCTGTGTTTATAGGGAACAAATTGAAGATAGTAGATCTGA
Found at i:92667703 original size:88 final size:88
Alignment explanation
Indices: 92667379--92667702 Score: 374
Period size: 88 Copynumber: 3.7 Consensus size: 88
92667369 AAACAAGATT
* *
92667379 TGGCATCCCTGTGTTTATAGGAAACAAATCGAAGATAGTAGATCTGACACTCC-TGTGCTTATAG
1 TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACA-TCCTTGTGCTTATAG
*
92667443 CGAAGCAGATTGAAGATTTCAACA
65 CGAAGCAGATTGAAGATTTCAGCA
* * ** * *
92667467 TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATTTCAG--CATGACATCCCTGTGTTTATAG
1 TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATC-TGACATCCTTGTGCTTATAG
* **
92667530 GGAA-CA-AGTTGAAGATAGCAG-A
65 CGAAGCAGA-TTGAAGATTTCAGCA
* *
92667552 TTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCTTGTGCTTA-C
1 --TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATCCTTGTGCTTATA
*
92667616 GCTGAAGCAGATCGAAGATTTCAGCA
64 GC-GAAGCAGATTGAAGATTTCAGCA
* * * *
92667642 TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCTTGTGCTTA
1 TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATCCTTGTGCTTA
92667703 CAAGGAACAA
Statistics
Matches: 197, Mismatches: 28, Indels: 22
0.80 0.11 0.09
Matches are distributed among these distances:
85 2 0.01
86 16 0.08
87 56 0.28
88 108 0.55
89 13 0.07
90 2 0.01
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (88 bp):
TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATCCTTGTGCTTATAGC
GAAGCAGATTGAAGATTTCAGCA
Found at i:92668234 original size:206 final size:206
Alignment explanation
Indices: 92667682--92668563 Score: 1354
Period size: 206 Copynumber: 4.3 Consensus size: 206
92667672 GAAGATAGCA
* * *
92667682 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTAATTTGGCTTTCATG-GTT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
* * *
92667746 TACGCTAAATCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
* ** * *
92667811 CGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTGGCCTTCATATGTTTATAATGAAGC
131 CGTCTCCATATTCGACGGAGAGCTGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGC
*
92667876 AGATCCAAGGT
196 AGATCCAAGAT
92667887 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGAC--A--T-A----GCTTTCACGTGCT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
* *
92667943 TACAATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATTGAAGTTTGG
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
92668008 CGTCTCCATATTCGACGGAGAGCTGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAA-C
131 CGTCTCCATATTCGACGGAGAGCTGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGC
92668072 AAGATCCAAGAT
196 -AGATCCAAGAT
*
92668084 GATTTGGCATTCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
* * * *
92668149 TGCGATGAAGCAAATCTAAGATGATTTTGCATCTTTGTATTTTCAGAGAACAAATCGAAGTTTGG
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
*
92668214 CGTCTCCATATTCGACGGAGAGCTGCCACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGC
131 CGTCTCCATATTCGACGGAGAGCTGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGC
92668279 AGATCCAAGAT
196 AGATCCAAGAT
* * * *
92668290 GATTTGGCATTCTTTTGCTTACAAGGAACAAATCGAAAACATAGCTGATTTGGCTTTTACGTGCT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
* *
92668355 TATGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTTAGAGAACAAATCGAAGTTTGG
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
* * *
92668420 CGTCTCCATATTCGACGGAGAGCTGCCACATAGCAGATCTAACCTTCAGATGATTAGACTGAAGC
131 CGTCTCCATATTCGACGGAGAGCTGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGC
92668485 AGATCCAAGAT
196 AGATCCAAGAT
* * * * * * *
92668496 GGTTTGGTATCCTTGTGCTTACAATGATCAAATCGAAGACATAGTTGATTTGGTTTTCACGAGCT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
92668561 TAC
66 TAC
92668564 ACTACAGGAA
Statistics
Matches: 621, Mismatches: 44, Indels: 23
0.90 0.06 0.03
Matches are distributed among these distances:
196 9 0.01
197 169 0.27
199 1 0.00
200 1 0.00
201 2 0.00
202 1 0.00
203 1 0.00
205 40 0.06
206 396 0.64
207 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30
Consensus pattern (206 bp):
GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
CGTCTCCATATTCGACGGAGAGCTGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGC
AGATCCAAGAT
Found at i:92668753 original size:41 final size:41
Alignment explanation
Indices: 92668684--92668785 Score: 143
Period size: 41 Copynumber: 2.5 Consensus size: 41
92668674 TATCAGCGTT
* * **
92668684 TTTTGTTAAAACGCAACTAAA-AATAGAGCATTAGCGGCGC
1 TTTTGGTAAAACGCCACTAAAGACCAGAGCATTAGCGGCGC
* *
92668724 TTTTGGTATAACGCCGCTAAAGACCAGAGCATTAGCGGCGC
1 TTTTGGTAAAACGCCACTAAAGACCAGAGCATTAGCGGCGC
92668765 TTTTGGTAAAACGCCACTAAA
1 TTTTGGTAAAACGCCACTAAA
92668786 AGTTATATAA
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
40 17 0.32
41 36 0.68
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.25
Consensus pattern (41 bp):
TTTTGGTAAAACGCCACTAAAGACCAGAGCATTAGCGGCGC
Found at i:92669230 original size:24 final size:24
Alignment explanation
Indices: 92669203--92669251 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
92669193 CGTATATTTG
92669203 TTAAAAGTTTATATAAAAATTAAT
1 TTAAAAGTTTATATAAAAATTAAT
92669227 TTAAAAGTTTATATAAAAATTAAT
1 TTAAAAGTTTATATAAAAATTAAT
92669251 T
1 T
92669252 GTTATTTTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (24 bp):
TTAAAAGTTTATATAAAAATTAAT
Found at i:92669407 original size:26 final size:26
Alignment explanation
Indices: 92669371--92669421 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
92669361 TCACAACTGA
*
92669371 ATTAATATACTTTATTAACCCATAAT
1 ATTAATATACTTGATTAACCCATAAT
92669397 ATTAATATACTTGATTAACCCATAA
1 ATTAATATACTTGATTAACCCATAA
92669422 CACCAACTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.43, C:0.16, G:0.02, T:0.39
Consensus pattern (26 bp):
ATTAATATACTTGATTAACCCATAAT
Found at i:92669882 original size:18 final size:19
Alignment explanation
Indices: 92669859--92669897 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
92669849 AGATCTTTTT
92669859 TATTTTT-TATCAAAATAA
1 TATTTTTATATCAAAATAA
*
92669877 TATTTTTATATGAAAATAA
1 TATTTTTATATCAAAATAA
92669896 TA
1 TA
92669898 AATATGATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (19 bp):
TATTTTTATATCAAAATAA
Found at i:92673293 original size:15 final size:15
Alignment explanation
Indices: 92673273--92673306 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
92673263 TAATTTGATG
*
92673273 TTTGGATGTTCCATT
1 TTTGGATGTACCATT
92673288 TTTGGATGTACCATT
1 TTTGGATGTACCATT
92673303 TTTG
1 TTTG
92673307 TTCATCTGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.15, C:0.12, G:0.21, T:0.53
Consensus pattern (15 bp):
TTTGGATGTACCATT
Found at i:92675230 original size:19 final size:21
Alignment explanation
Indices: 92675206--92675248 Score: 72
Period size: 19 Copynumber: 2.1 Consensus size: 21
92675196 AATCTTTAAG
92675206 GATATGCAATCTT-A-GATAT
1 GATATGCAATCTTGACGATAT
92675225 GATATGCAATCTTGACGATAT
1 GATATGCAATCTTGACGATAT
92675246 GAT
1 GAT
92675249 CTTGTAACCT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 13 0.59
20 1 0.05
21 8 0.36
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.35
Consensus pattern (21 bp):
GATATGCAATCTTGACGATAT
Found at i:92682776 original size:42 final size:42
Alignment explanation
Indices: 92682632--92682787 Score: 129
Period size: 42 Copynumber: 3.7 Consensus size: 42
92682622 TGTGTTTTCG
* * * *
92682632 TGTAAGACCACGTCTGGGACGTTGGCATCGACTTCTGTTTTACA
1 TGTAAGACCACGTCTAGGACGTTGGCATC-AATTTTG-ATTACA
* * * * * * *
92682676 TGTAAGACCATGTCTGGGACATCGACATC-ATATTTGATTTCG
1 TGTAAGACCACGTCTAGGACGTTGGCATCAAT-TTTGATTACA
* *
92682718 TGTAAGACC-CTATCTAGGACAG-TGGCATCAATTTTGGTTACA
1 TGTAAGACCAC-GTCTAGGAC-GTTGGCATCAATTTTGATTACA
92682760 TGTAAGACCACGTCTAGGACGTTGGCAT
1 TGTAAGACCACGTCTAGGACGTTGGCAT
92682788 TGTATATGTT
Statistics
Matches: 87, Mismatches: 19, Indels: 14
0.73 0.16 0.12
Matches are distributed among these distances:
41 1 0.01
42 55 0.63
43 6 0.07
44 25 0.29
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACGTCTAGGACGTTGGCATCAATTTTGATTACA
Found at i:92685416 original size:41 final size:40
Alignment explanation
Indices: 92685336--92685585 Score: 286
Period size: 41 Copynumber: 6.1 Consensus size: 40
92685326 GCAAAAATTG
* * * * *
92685336 TAAAACACAGAGCAATAGTGGTGTTTTTGGTAAGACGCCGC
1 TAAAAC-CAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
** * *
92685377 TAAAAATAGAGCAATAGCGGCG-TTTTAGTAAAAAGCGCCGC
1 TAAAACCAGAGCATTAGCGGCGCTTTTGGT-AAAA-CGCCGC
** * *
92685418 TAAAAATAGAGCATTAGCGGCGCTTTTGGTAAAACACCAC
1 TAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
*
92685458 TAAAGACCAGAGCATTAGCGGCGTTTTTGGTAAAACGCCGC
1 TAAA-ACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
* **
92685499 TGAAGACCAGAGCATTAGCGGCGCTTTTATTAAAACGCCGC
1 T-AAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
92685540 TAAAGACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
1 TAAA-ACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
92685581 TAAAA
1 TAAAA
92685586 GTCATATAAC
Statistics
Matches: 181, Mismatches: 22, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
39 6 0.03
40 27 0.15
41 140 0.77
42 8 0.04
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.22
Consensus pattern (40 bp):
TAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
Found at i:92685569 original size:123 final size:122
Alignment explanation
Indices: 92685343--92685584 Score: 326
Period size: 123 Copynumber: 2.0 Consensus size: 122
92685333 TTGTAAAACA
* * * *
92685343 CAGAGCAATAGTGGTGTTTTTGGTAAGACGCCGCTAAAAATAGAGCAATAGCGGCGTTTTAGTAA
1 CAGAGCAATAGCGGCGTTTTTGGTAAAACGCCGCTAAAAACAGAGCAATAGCGGCGTTTTAGTAA
*
92685408 AAAGCGCCGCTAAAAATAGAGCATTAGCGGCGCTTTTGGTAAAACACCACTAAAGAC
66 AAAGCGCCGCTAAAAACAGAGCATTAGCGGCGCTTTTGGTAAAACACCACTAAAGAC
* * * *
92685465 CAGAGCATTAGCGGCGTTTTTGGTAAAACGCCGCTGAAGACCAGAGCATTAGCGGCGCTTTTA-T
1 CAGAGCAATAGCGGCGTTTTTGGTAAAACGCCGCT-AAAAACAGAGCAATAGCGGCG-TTTTAGT
* * * *
92685529 TAAAA-CGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAA
64 AAAAAGCGCCGCTAAA-AACAGAGCATTAGCGGCGCTTTTGGTAAAACACCACTAAA
92685585 AGTCATATAA
Statistics
Matches: 104, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
122 41 0.39
123 58 0.56
124 5 0.05
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.22
Consensus pattern (122 bp):
CAGAGCAATAGCGGCGTTTTTGGTAAAACGCCGCTAAAAACAGAGCAATAGCGGCGTTTTAGTAA
AAAGCGCCGCTAAAAACAGAGCATTAGCGGCGCTTTTGGTAAAACACCACTAAAGAC
Found at i:92685781 original size:14 final size:14
Alignment explanation
Indices: 92685743--92685775 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
92685733 TTAATTATCA
*
92685743 TTATAGTTTAAGGT
1 TTATGGTTTAAGGT
92685757 TTATGGTTTAAGGT
1 TTATGGTTTAAGGT
92685771 TTATG
1 TTATG
92685776 AGTTAACTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (14 bp):
TTATGGTTTAAGGT
Found at i:92686079 original size:14 final size:14
Alignment explanation
Indices: 92686060--92686091 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
92686050 CTAAGATCTA
92686060 GGGTTTATGATTTG
1 GGGTTTATGATTTG
*
92686074 GGGTTTATGGTTTG
1 GGGTTTATGATTTG
92686088 GGGT
1 GGGT
92686092 ATGAGGTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.09, C:0.00, G:0.44, T:0.47
Consensus pattern (14 bp):
GGGTTTATGATTTG
Found at i:92686654 original size:83 final size:83
Alignment explanation
Indices: 92686502--92686794 Score: 299
Period size: 83 Copynumber: 3.5 Consensus size: 83
92686492 TAAAAACTAA
* * * * * *
92686502 GAGATTAGTGGCGTTTATTTAAAAAAAGCCGCAAAAAACATAGCAG-TTAACGAAAACGGCTTCG
1 GAGAGTAGCGGCGTTTTTTTAAAAAACGCCGCAAAAAACATAACAGTTTAACGAAAACGGCGTCG
92686566 TTTTAATTGGATATTTAG
66 TTTTAATTGGATATTTAG
**
92686584 GAGAGTAGCGGCGTTTTTCGAAAAAACGCCGCAAAAAACATAACAGTTTAACGAAAACGGCGTCG
1 GAGAGTAGCGGCGTTTTTTTAAAAAACGCCGCAAAAAACATAACAGTTTAACGAAAACGGCGTCG
*
92686649 TTTTAATTGGATTTTTAG
66 TTTTAATTGGATATTTAG
* * * * * * * * *
92686667 GGGAGTACCGGCGTTTTTTTTAAAAACGCCACAAAAAGAAAAAAAAAAGTATAACG-TAACGGCG
1 GAGAGTAGCGGCGTTTTTTTAAAAAACGCCGC--AAA-AAACATAACAGTTTAACGAAAACGGCG
* *
92686731 TCGTTTT-ATATGAAAATTTA-
63 TCGTTTTAAT-TGGATATTTAG
*
92686751 GAGGATTAGCGGCGTTTTTTTTTAAAAAACGCCGC-AAAAACATA
1 GA-GAGTAGCGGCG--TTTTTTTAAAAAACGCCGCAAAAAACATA
92686795 GTACTCTAAA
Statistics
Matches: 173, Mismatches: 30, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
82 39 0.23
83 65 0.38
84 5 0.03
85 33 0.19
86 14 0.08
87 17 0.10
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.27
Consensus pattern (83 bp):
GAGAGTAGCGGCGTTTTTTTAAAAAACGCCGCAAAAAACATAACAGTTTAACGAAAACGGCGTCG
TTTTAATTGGATATTTAG
Found at i:92689935 original size:183 final size:183
Alignment explanation
Indices: 92689627--92689958 Score: 646
Period size: 183 Copynumber: 1.8 Consensus size: 183
92689617 AGATTCAGCA
*
92689627 TCAGTTACTGCTTCCTACTCCTCCTGCAACTATTGGTTCAACTGAAGCTGCCATTTAATCTTTGA
1 TCAGTTACTGCTTCCTACTCCTCCTGCAACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGA
92689692 ATTAATATTTGGTACTGATATAGATAAAGTTTTTATATTTGCTTAAACTGAAATATATTTGGTGC
66 ATTAATATTTGGTACTGATATAGATAAAGTTTTTATATTTGCTTAAACTGAAATATATTTGGTGC
92689757 TACTCTTATAATCTTACATGTGTCTGTATTAGTGAATTAATGTTGTATGTATT
131 TACTCTTATAATCTTACATGTGTCTGTATTAGTGAATTAATGTTGTATGTATT
*
92689810 TCAGTTACTGCTTCCTGCTCCTCCTGCAACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGA
1 TCAGTTACTGCTTCCTACTCCTCCTGCAACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGA
92689875 ATTAATATTTGGTACTGATATAGATAAAGTTTTTATATTTGCTTAAACTGAAATATATTTGGTGC
66 ATTAATATTTGGTACTGATATAGATAAAGTTTTTATATTTGCTTAAACTGAAATATATTTGGTGC
92689940 TACTCTTATAATCTTACAT
131 TACTCTTATAATCTTACAT
92689959 CTGTTCTAGG
Statistics
Matches: 147, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
183 147 1.00
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.42
Consensus pattern (183 bp):
TCAGTTACTGCTTCCTACTCCTCCTGCAACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGA
ATTAATATTTGGTACTGATATAGATAAAGTTTTTATATTTGCTTAAACTGAAATATATTTGGTGC
TACTCTTATAATCTTACATGTGTCTGTATTAGTGAATTAATGTTGTATGTATT
Found at i:92690067 original size:111 final size:111
Alignment explanation
Indices: 92689873--92690111 Score: 478
Period size: 111 Copynumber: 2.2 Consensus size: 111
92689863 TTTAATCTTC
92689873 GAATTAATATTTGGTACTGATATAGATAAAGTTTTTATATTTGCTTAAACTGAAATATATTTGGT
1 GAATTAATATTTGGTACTGATATAGATAAAGTTTTTATATTTGCTTAAACTGAAATATATTTGGT
92689938 GCTACTCTTATAATCTTACATCTGTTCTAGGTACTATCGAGCACCT
66 GCTACTCTTATAATCTTACATCTGTTCTAGGTACTATCGAGCACCT
92689984 GAATTAATATTTGGTACTGATATAGATAAAGTTTTTATATTTGCTTAAACTGAAATATATTTGGT
1 GAATTAATATTTGGTACTGATATAGATAAAGTTTTTATATTTGCTTAAACTGAAATATATTTGGT
92690049 GCTACTCTTATAATCTTACATCTGTTCTAGGTACTATCGAGCACCT
66 GCTACTCTTATAATCTTACATCTGTTCTAGGTACTATCGAGCACCT
92690095 GAATTAATATTTGGTAC
1 GAATTAATATTTGGTAC
92690112 AACTAAATAC
Statistics
Matches: 128, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
111 128 1.00
ACGTcount: A:0.31, C:0.13, G:0.15, T:0.41
Consensus pattern (111 bp):
GAATTAATATTTGGTACTGATATAGATAAAGTTTTTATATTTGCTTAAACTGAAATATATTTGGT
GCTACTCTTATAATCTTACATCTGTTCTAGGTACTATCGAGCACCT
Found at i:92690502 original size:18 final size:18
Alignment explanation
Indices: 92690479--92690514 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
92690469 CAACCTTCTA
**
92690479 TCACATAATTTACATAAC
1 TCACATAACGTACATAAC
92690497 TCACATAACGTACATAAC
1 TCACATAACGTACATAAC
92690515 AACTTACATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.44, C:0.25, G:0.03, T:0.28
Consensus pattern (18 bp):
TCACATAACGTACATAAC
Found at i:92696522 original size:44 final size:44
Alignment explanation
Indices: 92696431--92696594 Score: 242
Period size: 43 Copynumber: 3.8 Consensus size: 44
92696421 TAGCGGCGTG
* * * * *
92696431 TTTTAAAAAAGCGGCGCTAAAGACCAGGACTTTTAGTGGCAC-T
1 TTTTAAAAAAACGCCACTAAAGAACAAGACTTTTAGTGGCACTT
*
92696474 TTTTAAAAAAACGCCACTAAAGAACAAGACTTTTAGTGGCGCTT
1 TTTTAAAAAAACGCCACTAAAGAACAAGACTTTTAGTGGCACTT
* *
92696518 TTTTAAAAAAACGCCACTAAAGAACAAGACTTTTAGCGGCTCTT
1 TTTTAAAAAAACGCCACTAAAGAACAAGACTTTTAGTGGCACTT
92696562 TTTT-AAAAAACGCCACTAAAGAACAAGACTTTT
1 TTTTAAAAAAACGCCACTAAAGAACAAGACTTTT
92696595 CGCGGCTTTT
Statistics
Matches: 112, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
43 65 0.58
44 47 0.42
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (44 bp):
TTTTAAAAAAACGCCACTAAAGAACAAGACTTTTAGTGGCACTT
Found at i:92696607 original size:87 final size:87
Alignment explanation
Indices: 92696420--92696609 Score: 256
Period size: 87 Copynumber: 2.2 Consensus size: 87
92696410 ACTGGGCAAA
* * * * * * *
92696420 TTAGCGGCG-TGTTTTAAAAAAGCGGCGCTAAAGACCAGGACTTTTAGTGGCACTTTTTAAAAAA
1 TTAGCGGCGCTTTTTTAAAAAAACGCCACTAAAGAACAAGACTTTTAGCGGCACTTTTTAAAAAA
92696484 ACGCCACTAAAGAACAAGACTT
66 ACGCCACTAAAGAACAAGACTT
* * *
92696506 TTAGTGGCGCTTTTTTAAAAAAACGCCACTAAAGAACAAGACTTTTAGCGGCTCTTTTTTAAAAA
1 TTAGCGGCGCTTTTTTAAAAAAACGCCACTAAAGAACAAGACTTTTAGCGGCACTTTTTAAAAAA
92696571 ACGCCACTAAAGAACAAGACTT
66 ACGCCACTAAAGAACAAGACTT
* **
92696593 TTCGCGGCTTTTTTTTA
1 TTAGCGGCGCTTTTTTA
92696610 TATAAGCGCC
Statistics
Matches: 89, Mismatches: 14, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
86 8 0.09
87 81 0.91
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (87 bp):
TTAGCGGCGCTTTTTTAAAAAAACGCCACTAAAGAACAAGACTTTTAGCGGCACTTTTTAAAAAA
ACGCCACTAAAGAACAAGACTT
Found at i:92696640 original size:87 final size:85
Alignment explanation
Indices: 92696462--92696725 Score: 226
Period size: 87 Copynumber: 3.0 Consensus size: 85
92696452 GACCAGGACT
* * * * *
92696462 TTTAGTGGCACTTTTTAAAAAAACGCCACTAAAGAACAAGACTTTTAGTGGCGCTTTTTTAAAAA
1 TTTAGCGGC-CTTTTTTAAAAAACGCCACTAAAGAACAAGACTTTTAGCGGC-CTTTTTTATATA
* ** ** *
92696527 AACGCCACTA-AAGAACAAGAC
64 AGCGCCACTATAAGTCCTGGTC
* *
92696548 TTTTAGCGGCTCTTTTTTAAAAAACGCCACTAAAGAACAAGACTTTTCGCGGCTTTTTTTTATAT
1 -TTTAGCGGC-CTTTTTTAAAAAACGCCACTAAAGAACAAGACTTTTAGCGGC-CTTTTTTATAT
*
92696613 AAGCGCCTCTATAAGTCCTGGTC
63 AAGCGCCACTATAAGTCCTGGTC
* * ** ** * *
92696636 TTTAGCGGCGTTTTTTAAAAAAGCGCCGCTATAAGTCCTTGTC-TTTAGCGGCGTTTTTTATATA
1 TTTAGCGGCCTTTTTTAAAAAA-CGCCACTA-AAGAACAAGACTTTTAGCGGCCTTTTTTATATA
* * *
92696700 AGTGCCGCTATAATTCCTGGTC
64 AGCGCCACTATAAGTCCTGGTC
92696722 TTTA
1 TTTA
92696726 AAGTTTTAGC
Statistics
Matches: 146, Mismatches: 28, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
86 46 0.32
87 88 0.60
88 12 0.08
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (85 bp):
TTTAGCGGCCTTTTTTAAAAAACGCCACTAAAGAACAAGACTTTTAGCGGCCTTTTTTATATAAG
CGCCACTATAAGTCCTGGTC
Found at i:92696650 original size:43 final size:43
Alignment explanation
Indices: 92696603--92696725 Score: 192
Period size: 43 Copynumber: 2.9 Consensus size: 43
92696593 TTCGCGGCTT
*
92696603 TTTTTTATATAAGCGCCTCTATAAGTCCTGGTCTTTAGCGGCG
1 TTTTTTATATAAGCGCCGCTATAAGTCCTGGTCTTTAGCGGCG
* * *
92696646 TTTTTTAAAAAAGCGCCGCTATAAGTCCTTGTCTTTAGCGGCG
1 TTTTTTATATAAGCGCCGCTATAAGTCCTGGTCTTTAGCGGCG
* *
92696689 TTTTTTATATAAGTGCCGCTATAATTCCTGGTCTTTA
1 TTTTTTATATAAGCGCCGCTATAAGTCCTGGTCTTTA
92696726 AAGTTTTAGC
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 71 1.00
ACGTcount: A:0.21, C:0.20, G:0.19, T:0.41
Consensus pattern (43 bp):
TTTTTTATATAAGCGCCGCTATAAGTCCTGGTCTTTAGCGGCG
Found at i:92698950 original size:131 final size:129
Alignment explanation
Indices: 92698694--92698950 Score: 356
Period size: 129 Copynumber: 2.0 Consensus size: 129
92698684 TAATTATTCT
* * *
92698694 TTTAAAAATTCTCTAAAACGAAGGCAATACTAGATGTTTGGCAATTCGGGAATCATGCTCTATCG
1 TTTAAAAACTCTCTAAAACGAAGGCAATACTAGATATTTGGCAATTCGGGAATCATGCCCTATCG
* * *
92698759 TGTTGGGTTGCGATTTCCCTTTTTTCAAAACAATCGAATATTCCTTTGGAATTTCACTCATGTC
66 TGCTGGGTTGCGATTTCCCTTTGTTCAAAACAATCGAATATTCCTTTAGAATTTCACTCATGTC
* * ** *
92698823 TTTAAAAACTCT-TCAAAACGAAGGTAATACTCGATATTTGGTGATTCGGGGAATCTTGCCCTAT
1 TTTAAAAACTCTCT-AAAACGAAGGCAATACTAGATATTTGGCAATTC-GGGAATCATGCCCTAT
*
92698887 CGTGCTGGGTTGCGATTT-CCTGCTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCAT
64 CGTGCTGGGTTGCGATTTCCCT--TTGTTCAAAACAATCGAATATTCCTTTAGAATTTCACTCAT
92698951 ACTCTCTAAA
Statistics
Matches: 112, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
128 1 0.01
129 42 0.38
130 31 0.28
131 38 0.34
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.36
Consensus pattern (129 bp):
TTTAAAAACTCTCTAAAACGAAGGCAATACTAGATATTTGGCAATTCGGGAATCATGCCCTATCG
TGCTGGGTTGCGATTTCCCTTTGTTCAAAACAATCGAATATTCCTTTAGAATTTCACTCATGTC
Found at i:92706624 original size:21 final size:20
Alignment explanation
Indices: 92706590--92706657 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 20
92706580 ACATTTTTGT
92706590 AAAGAGAAAA-CAAAGAAAAGA
1 AAAGA-AAAAGCAAA-AAAAGA
*
92706611 AAAGAAAAAGCAAAAGAAGAA
1 AAAGAAAAAGCAAAAAAAG-A
* *
92706632 AAAGAAAACGAAATAAAAAGA
1 AAAGAAAAAGCAA-AAAAAGA
92706653 AAAGA
1 AAAGA
92706658 GAGGCAAGAG
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
20 8 0.20
21 27 0.68
22 5 0.12
ACGTcount: A:0.76, C:0.04, G:0.18, T:0.01
Consensus pattern (20 bp):
AAAGAAAAAGCAAAAAAAGA
Found at i:92706625 original size:6 final size:5
Alignment explanation
Indices: 92706601--92706657 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
92706591 AAGAGAAAAC
*
92706601 AAAGA AAAGA AAAGAA AAAGCA AAAGA AGA-A AAAGA AAACGA AATA-A
1 AAAGA AAAGA AAAG-A AAAG-A AAAGA AAAGA AAAGA AAA-GA AA-AGA
92706648 AAAGA AAAGA
1 AAAGA AAAGA
92706658 GAGGCAAGAG
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
4 4 0.09
5 25 0.57
6 14 0.32
7 1 0.02
ACGTcount: A:0.77, C:0.04, G:0.18, T:0.02
Consensus pattern (5 bp):
AAAGA
Found at i:92706632 original size:15 final size:14
Alignment explanation
Indices: 92706601--92706657 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 14
92706591 AAGAGAAAAC
92706601 AAAGAAAAGAAAAGAA
1 AAAGAAAAG--AAGAA
92706617 AAAGCAAAAGAAGAA
1 AAAG-AAAAGAAGAA
*
92706632 AAAGAAAACGAAATAA
1 AAAGAAAA-G-AAGAA
92706648 AAAGAAAAGA
1 AAAGAAAAGA
92706658 GAGGCAAGAG
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
14 5 0.14
15 11 0.30
16 16 0.43
17 5 0.14
ACGTcount: A:0.77, C:0.04, G:0.18, T:0.02
Consensus pattern (14 bp):
AAAGAAAAGAAGAA
Found at i:92706772 original size:30 final size:31
Alignment explanation
Indices: 92706738--92706819 Score: 96
Period size: 30 Copynumber: 2.7 Consensus size: 31
92706728 TATGAAAAGT
*
92706738 AAAAAGAAAAAGAAAAAGAAA-ATGAGATTG
1 AAAAAGAAAAAGAAAAAGAAATATGAGAGTG
* * *
92706768 AAAAAGAGAACG-AAAAGAAATTTGAGAGTG
1 AAAAAGAAAAAGAAAAAGAAATATGAGAGTG
* *
92706798 AAAAAGAAGATGAAAAAGAAAT
1 AAAAAGAAAAAGAAAAAGAAAT
92706820 TGAAACAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
29 8 0.19
30 26 0.60
31 9 0.21
ACGTcount: A:0.66, C:0.01, G:0.22, T:0.11
Consensus pattern (31 bp):
AAAAAGAAAAAGAAAAAGAAATATGAGAGTG
Found at i:92706792 original size:24 final size:24
Alignment explanation
Indices: 92706743--92706812 Score: 61
Period size: 24 Copynumber: 2.9 Consensus size: 24
92706733 AAAGTAAAAA
*
92706743 GAAAAAGAAAAAGAAAATGAGATT
1 GAAAAAGAAAAAGAAAATGAAATT
* *
92706767 GAAAAAGAGAACGAAAA-GAAATTT
1 GAAAAAGAAAAAGAAAATGAAA-TT
* ** *
92706791 GAGAGTGAAAAAGAAGATGAAA
1 GAAAAAGAAAAAGAAAATGAAA
92706813 AAGAAATTGA
Statistics
Matches: 35, Mismatches: 9, Indels: 3
0.74 0.19 0.06
Matches are distributed among these distances:
23 3 0.09
24 28 0.80
25 4 0.11
ACGTcount: A:0.63, C:0.01, G:0.24, T:0.11
Consensus pattern (24 bp):
GAAAAAGAAAAAGAAAATGAAATT
Found at i:92708958 original size:30 final size:31
Alignment explanation
Indices: 92708913--92709019 Score: 105
Period size: 30 Copynumber: 3.6 Consensus size: 31
92708903 CATCTTGCCT
* *
92708913 GAGCTAAACC-GAGCTC-ACTTTCAACTCAC
1 GAGCTAAACCTTAGCTCAACTTTCAGCTCAC
* *
92708942 GAGCTAAACCTTAGCTCAAC-TTCAGCTTAG
1 GAGCTAAACCTTAGCTCAACTTTCAGCTCAC
* * * *
92708972 GAGTTTAGCCTCAGCTCAACTTT-AGCTCAC
1 GAGCTAAACCTTAGCTCAACTTTCAGCTCAC
*
92709002 GAGCTAAAGCTTAGCTCA
1 GAGCTAAACCTTAGCTCA
92709020 TTTTAGTTTA
Statistics
Matches: 60, Mismatches: 15, Indels: 5
0.75 0.19 0.06
Matches are distributed among these distances:
29 10 0.17
30 46 0.77
31 4 0.07
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (31 bp):
GAGCTAAACCTTAGCTCAACTTTCAGCTCAC
Found at i:92716453 original size:12 final size:12
Alignment explanation
Indices: 92716423--92716484 Score: 54
Period size: 12 Copynumber: 5.1 Consensus size: 12
92716413 AGAAAAGTCA
*
92716423 AAAGAAAAAGAG
1 AAAGAAAAAAAG
*
92716435 CAAGAAAAAAAG
1 AAAGAAAAAAAG
*
92716447 AATGAAAAATAA-
1 AAAGAAAAA-AAG
92716459 AAAGAAAAGAAAG
1 AAAGAAAA-AAAG
* *
92716472 TAGGAAAAAAAG
1 AAAGAAAAAAAG
92716484 A
1 A
92716485 GGAAAAAGTG
Statistics
Matches: 39, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
12 30 0.77
13 9 0.23
ACGTcount: A:0.74, C:0.02, G:0.19, T:0.05
Consensus pattern (12 bp):
AAAGAAAAAAAG
Found at i:92727122 original size:182 final size:182
Alignment explanation
Indices: 92726808--92727170 Score: 663
Period size: 182 Copynumber: 2.0 Consensus size: 182
92726798 TTGACTGTCG
* *
92726808 CGCCATCAACAAGACCATCGTCAAATATAGACATCACATTCCCTGCCTTGATGACATGCTTGATG
1 CGCCATCAACAAGACCATCGTCAAATATAGACATCACATTCCCTGCCTTGACGACATGCTTGACG
92726873 AACTTAGCGGAGCCCAACTCTTTTCAAAGATAGACTTAAAGAGTGGCTATCACCAAATTCGTATG
66 AACTTAGCGGAGCCCAACTCTTTTCAAAGATAGACTTAAAGAGTGGCTATCACCAAATTCGTATG
** *
92726938 CGAGAGGGCAAGACCATTGTCAAATATAGACATCACATTCCCTGCCTTGACA
131 CGAGAGAACAAGACCATCGTCAAATATAGACATCACATTCCCTGCCTTGACA
92726990 CGCCATCAACAAGACCATCGTCAAATATAGACATCACATTCCCTGCCTTGACGACATGCTTGACG
1 CGCCATCAACAAGACCATCGTCAAATATAGACATCACATTCCCTGCCTTGACGACATGCTTGACG
* *
92727055 AACTTAGCGGAGCCCAACTCTTTTCAAAGATATACTTAAAGAGTGGCTATCACCAAATTCTTATG
66 AACTTAGCGGAGCCCAACTCTTTTCAAAGATAGACTTAAAGAGTGGCTATCACCAAATTCGTATG
92727120 CGAGAGAACAAGACCATCGTCAAATATAGACATCACATTCCCTGCCTTGAC
131 CGAGAGAACAAGACCATCGTCAAATATAGACATCACATTCCCTGCCTTGAC
92727171 GACATGCTTG
Statistics
Matches: 174, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
182 174 1.00
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.24
Consensus pattern (182 bp):
CGCCATCAACAAGACCATCGTCAAATATAGACATCACATTCCCTGCCTTGACGACATGCTTGACG
AACTTAGCGGAGCCCAACTCTTTTCAAAGATAGACTTAAAGAGTGGCTATCACCAAATTCGTATG
CGAGAGAACAAGACCATCGTCAAATATAGACATCACATTCCCTGCCTTGACA
Found at i:92727232 original size:129 final size:129
Alignment explanation
Indices: 92726997--92727254 Score: 489
Period size: 129 Copynumber: 2.0 Consensus size: 129
92726987 ACACGCCATC
92726997 AACAAGACCATCGTCAAATATAGACATCACATTCCCTGCCTTGACGACATGCTTGACGAACTTAG
1 AACAAGACCATCGTCAAATATAGACATCACATTCCCTGCCTTGACGACATGCTTGACGAACTTAG
* * *
92727062 CGGAGCCCAACTCTTTTCAAAGATATACTTAAAGAGTGGCTATCACCAAATTCTTATGCGAGAG
66 CGGAGCCCAACTCTTTTCAAAGATAGACTTAAAGAGCGGCTATCACCAAATTCGTATGCGAGAG
92727126 AACAAGACCATCGTCAAATATAGACATCACATTCCCTGCCTTGACGACATGCTTGACGAACTTAG
1 AACAAGACCATCGTCAAATATAGACATCACATTCCCTGCCTTGACGACATGCTTGACGAACTTAG
92727191 CGGAGCCCAACTCTTTTCAAAGATAGACTTAAAGAGCGGCTATCACCAAATTCGTATGCGAGAG
66 CGGAGCCCAACTCTTTTCAAAGATAGACTTAAAGAGCGGCTATCACCAAATTCGTATGCGAGAG
92727255 GGAGACGAAT
Statistics
Matches: 126, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
129 126 1.00
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (129 bp):
AACAAGACCATCGTCAAATATAGACATCACATTCCCTGCCTTGACGACATGCTTGACGAACTTAG
CGGAGCCCAACTCTTTTCAAAGATAGACTTAAAGAGCGGCTATCACCAAATTCGTATGCGAGAG
Found at i:92733155 original size:39 final size:41
Alignment explanation
Indices: 92733060--92733243 Score: 190
Period size: 40 Copynumber: 4.6 Consensus size: 41
92733050 TTGAATGATG
*
92733060 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATA
*
92733099 TCCGGACTAAGAT-CCGAAGGCATTTGTGCG-AGATACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAAG-TACTAATA
92733139 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGATACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATA
* * *
92733178 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
* * *
92733218 ACCGAGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
92733244 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 11, Indels: 19
0.81 0.07 0.12
Matches are distributed among these distances:
39 54 0.44
40 59 0.48
41 11 0.09
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
Found at i:92733265 original size:79 final size:79
Alignment explanation
Indices: 92733112--92733276 Score: 176
Period size: 79 Copynumber: 2.1 Consensus size: 79
92733102 GGACTAAGAT
* * **
92733112 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGAGCTAAGCCCGAAGGCATTTGAACGAGATACTAA
* *
92733177 ATCTGGGTTAAGTC
66 ATCTCGGTTAAATC
* *
92733191 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGAGCTATGTCCCGAAGGCATTTGAACGAGGA-G
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGAGCTAAG-CCCGAAGGCATTTGAACGA-GATA
* *
92733253 CTATATC-CGGTTAAATT
62 CTAAATCTCGGTTAAATC
92733270 CCGAAGG
1 CCGAAGG
92733277 TACGTGATTT
Statistics
Matches: 72, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
78 3 0.04
79 44 0.61
80 23 0.32
81 2 0.03
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGAGCTAAGCCCGAAGGCATTTGAACGAGATACTAA
ATCTCGGTTAAATC
Found at i:92736506 original size:25 final size:25
Alignment explanation
Indices: 92736478--92736527 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
92736468 TTGTGAATGC
*
92736478 ATCTGAGTGTGCTAATTGTAGTTCT
1 ATCTGAGTGTGATAATTGTAGTTCT
*
92736503 ATCTGAGTGTGATGATTGTAGTTCT
1 ATCTGAGTGTGATAATTGTAGTTCT
92736528 GCTGTTGTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.20, C:0.10, G:0.26, T:0.44
Consensus pattern (25 bp):
ATCTGAGTGTGATAATTGTAGTTCT
Found at i:92739430 original size:34 final size:33
Alignment explanation
Indices: 92739387--92739451 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 33
92739377 GTCTCTAAAC
*
92739387 TGGGCTAAGGCCC-ATACTGATACTGATACTGTAA
1 TGGGCTAAGGCCCTA-ACTGAAACTGA-ACTGTAA
92739421 TGGGCTAAGGCCCTAACTGAAACTGAACTGT
1 TGGGCTAAGGCCCTAACTGAAACTGAACTGT
92739452 TACTGATGCG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
33 5 0.17
34 23 0.79
35 1 0.03
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.25
Consensus pattern (33 bp):
TGGGCTAAGGCCCTAACTGAAACTGAACTGTAA
Found at i:92739687 original size:28 final size:28
Alignment explanation
Indices: 92739644--92739697 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
92739634 TTCTTATTAG
92739644 ATTCTAAGTTACAAGTATTTTAATCTAA
1 ATTCTAAGTTACAAGTATTTTAATCTAA
*
92739672 ATTCTAAGTTATAAGTATTTTAATCT
1 ATTCTAAGTTACAAGTATTTTAATCT
92739698 GGGTATCTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.37, C:0.09, G:0.07, T:0.46
Consensus pattern (28 bp):
ATTCTAAGTTACAAGTATTTTAATCTAA
Found at i:92751597 original size:43 final size:43
Alignment explanation
Indices: 92751536--92751749 Score: 263
Period size: 43 Copynumber: 5.0 Consensus size: 43
92751526 TATATAGACG
* **
92751536 TCGATATGTGATTACGTGTAAGACCAAGTCTGAAACATTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCA
* * *
92751579 TCGATATGTGATTACGTGTAAGACCACGTTTAGGACGTTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCA
** *
92751622 TCGATATGTGA-TACGTGTAAGACCTTGTCTGGGACGTTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCA
* * *
92751664 TCTATATGTG-TTACGAGTAAGACC-CTGTCTGGGACAGTGGCA
1 TCGATATGTGATTACGTGTAAGACCAC-GTCTGGGACATTGGCA
* * *
92751706 TCGATATGAGATTACATGTAAGACCACGTCAGGGACATTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCA
92751749 T
1 T
92751750 TGTACCATAT
Statistics
Matches: 146, Mismatches: 21, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
42 70 0.48
43 75 0.51
44 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (43 bp):
TCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCA
Found at i:92752671 original size:12 final size:12
Alignment explanation
Indices: 92752654--92752709 Score: 51
Period size: 12 Copynumber: 4.7 Consensus size: 12
92752644 TATATTTAAA
92752654 GTATATCTCAAG
1 GTATATCTCAAG
* *
92752666 GTATATCTTATG
1 GTATATCTCAAG
* * *
92752678 CTTATAT-TTAAA
1 -GTATATCTCAAG
92752690 GTATATCTCAAG
1 GTATATCTCAAG
92752702 GTATATCT
1 GTATATCT
92752710 TGTATGGTAG
Statistics
Matches: 34, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
11 5 0.15
12 24 0.71
13 5 0.15
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.43
Consensus pattern (12 bp):
GTATATCTCAAG
Found at i:92752685 original size:36 final size:36
Alignment explanation
Indices: 92752638--92752710 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
92752628 AGTCATGATA
92752638 TATGCTTATATTTAAAGTATATCTCAAGGTATATCT
1 TATGCTTATATTTAAAGTATATCTCAAGGTATATCT
92752674 TATGCTTATATTTAAAGTATATCTCAAGGTATATCT
1 TATGCTTATATTTAAAGTATATCTCAAGGTATATCT
92752710 T
1 T
92752711 GTATGGTAGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.33, C:0.11, G:0.11, T:0.45
Consensus pattern (36 bp):
TATGCTTATATTTAAAGTATATCTCAAGGTATATCT
Found at i:92763473 original size:27 final size:26
Alignment explanation
Indices: 92763456--92763525 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 26
92763446 ATATTAAGTC
92763456 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATAT-ATCAACT
*
92763483 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATAT-ATC-AACT
*
92763511 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
92763526 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (26 bp):
CGCACACTCAGTGCTATATATCAACT
Done.