Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 280 of 284
Found at i:94320642 original size:54 final size:54
Alignment explanation
Indices: 94320525--94320644 Score: 125
Period size: 54 Copynumber: 2.2 Consensus size: 54
94320515 CGGTTTGAGG
* * * *
94320525 CACGGCCGTGTGTATTAAGTCAGTGTGTTACACAGCCTAGCACATGGCCTACGA
1 CACGGCCGTGTGTATCAAGTCAGAGAGTTACACAGCCTAGCACACGGCCTACGA
** * * * * *
94320579 CGTGACCGTGTGTCA-CAAGTTAGAGAGTTACACGGTCTAGCACACGGCCTGCGA
1 CACGGCCGTGTGT-ATCAAGTCAGAGAGTTACACAGCCTAGCACACGGCCTACGA
94320633 CACGGCCGTGTG
1 CACGGCCGTGTG
94320645 GCCCAACTCA
Statistics
Matches: 51, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
54 50 0.98
55 1 0.02
ACGTcount: A:0.23, C:0.27, G:0.29, T:0.22
Consensus pattern (54 bp):
CACGGCCGTGTGTATCAAGTCAGAGAGTTACACAGCCTAGCACACGGCCTACGA
Found at i:94321844 original size:27 final size:27
Alignment explanation
Indices: 94321792--94321945 Score: 100
Period size: 27 Copynumber: 5.7 Consensus size: 27
94321782 GGAAAAAATA
* *
94321792 ATAAAATTTGAAAAAAAAAGGAAAAACT
1 ATAAAATTTG-AAAAAATAGGCAAAACT
* * *
94321820 GTAAAATTTGAAAACATAGGCAAAATT
1 ATAAAATTTGAAAAAATAGGCAAAACT
*
94321847 ATAAAA-TT-AAAATATAGAGGCAAAACT
1 ATAAAATTTGAAAA-A-ATAGGCAAAACT
* **
94321874 ATAAAA-TTCAAAAAATAGGGGCAAAGTT
1 ATAAAATTTGAAAAAATA--GGCAAAACT
* ** *
94321902 ATAAAATCT-AAAAAATAGGGGAAATT
1 ATAAAATTTGAAAAAATAGGCAAAACT
* *
94321928 ATAAATTTTAAAAAAATA
1 ATAAAATTTGAAAAAATA
94321946 AGGGACATGC
Statistics
Matches: 101, Mismatches: 18, Indels: 15
0.75 0.13 0.11
Matches are distributed among these distances:
25 4 0.04
26 17 0.17
27 45 0.45
28 34 0.34
29 1 0.01
ACGTcount: A:0.59, C:0.05, G:0.12, T:0.23
Consensus pattern (27 bp):
ATAAAATTTGAAAAAATAGGCAAAACT
Found at i:94321896 original size:28 final size:28
Alignment explanation
Indices: 94321838--94321942 Score: 119
Period size: 28 Copynumber: 3.9 Consensus size: 28
94321828 TGAAAACATA
* *
94321838 GGCAAAATTATAAAATT-AAAATATAGA
1 GGCAAAATTATAAAATTCAAAAAATAGG
*
94321865 GGCAAAACTATAAAATTCAAAAAATAGG
1 GGCAAAATTATAAAATTCAAAAAATAGG
*
94321893 GGCAAAGTTATAAAA-TCTAAAAAATAGG
1 GGCAAAATTATAAAATTC-AAAAAATAGG
* *
94321921 GG--AAATTATAAATTTTAAAAAA
1 GGCAAAATTATAAAATTCAAAAAA
94321943 ATAAGGGACA
Statistics
Matches: 67, Mismatches: 8, Indels: 7
0.82 0.10 0.09
Matches are distributed among these distances:
26 15 0.22
27 19 0.28
28 33 0.49
ACGTcount: A:0.57, C:0.06, G:0.13, T:0.24
Consensus pattern (28 bp):
GGCAAAATTATAAAATTCAAAAAATAGG
Found at i:94321942 original size:55 final size:55
Alignment explanation
Indices: 94321786--94321945 Score: 132
Period size: 55 Copynumber: 2.9 Consensus size: 55
94321776 AGAAGGGGAA
* * * * * *
94321786 AAAATAATAAAATTTGAAAAAA-AAAGGAAAAACTGTAAAATTTGAAAACATA--GGC
1 AAAATTATAAAA-TT-AAAAAATAGAGGCAAAACTATAAAA-TTAAAAAAATAGGGGC
* *
94321841 AAAATTATAAAATTAAAATATAGAGGCAAAACTATAAAATTCAAAAAATAGGGGC
1 AAAATTATAAAATTAAAAAATAGAGGCAAAACTATAAAATTAAAAAAATAGGGGC
* * * *
94321896 AAAGTTATAAAATCTAAAAAATAG-GG-GAAATTATAAATTTTAAAAAAATA
1 AAAATTATAAAAT-TAAAAAATAGAGGCAAAACTATAAA-ATTAAAAAAATA
94321946 AGGGACATGC
Statistics
Matches: 87, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
53 14 0.16
54 26 0.30
55 38 0.44
56 9 0.10
ACGTcount: A:0.60, C:0.05, G:0.12, T:0.23
Consensus pattern (55 bp):
AAAATTATAAAATTAAAAAATAGAGGCAAAACTATAAAATTAAAAAAATAGGGGC
Found at i:94325667 original size:45 final size:44
Alignment explanation
Indices: 94325599--94325768 Score: 225
Period size: 45 Copynumber: 3.8 Consensus size: 44
94325589 TTGGCATGAA
* * * *
94325599 AAATGAATAAGACCATATTTGAAGGACATTATGGCAATATACTGG
1 AAATGAATAAAACCATAGTTGAAAGACACTATGGCAATATAC-GG
* *
94325644 AAACGAATAAAACCATAGTTG-AAGACACTATGGCACTATACCGG
1 AAATGAATAAAACCATAGTTGAAAGACACTATGGCAATATA-CGG
*
94325688 AAATGAATAAAACCATAGTTGAAAGACACTATGGCAACATGACGG
1 AAATGAATAAAACCATAGTTGAAAGACACTATGGCAATAT-ACGG
* *
94325733 AAATGAATAAGACCATAGTTTAAAGACACTATGGCA
1 AAATGAATAAAACCATAGTTGAAAGACACTATGGCA
94325769 TCATATTAGA
Statistics
Matches: 111, Mismatches: 11, Indels: 6
0.87 0.09 0.05
Matches are distributed among these distances:
44 38 0.34
45 72 0.65
46 1 0.01
ACGTcount: A:0.45, C:0.15, G:0.19, T:0.21
Consensus pattern (44 bp):
AAATGAATAAAACCATAGTTGAAAGACACTATGGCAATATACGG
Found at i:94325750 original size:89 final size:90
Alignment explanation
Indices: 94325599--94325768 Score: 245
Period size: 89 Copynumber: 1.9 Consensus size: 90
94325589 TTGGCATGAA
* * * * *
94325599 AAATGAATAAGACCATATTTGAAGGACATTATGGCAATATACTGGAAACGAATAAAACCATAG-T
1 AAATGAATAAAACCATAGTTGAAAGACACTATGGCAACATACTGGAAACGAATAAAACCATAGTT
*
94325663 TGAAGACACTATGGCACTATACCGG
66 TAAAGACACTATGGCACTATACCGG
* *
94325688 AAATGAATAAAACCATAGTTGAAAGACACTATGGCAACATGAC-GGAAATGAATAAGACCATAGT
1 AAATGAATAAAACCATAGTTGAAAGACACTATGGCAACAT-ACTGGAAACGAATAAAACCATAGT
94325752 TTAAAGACACTATGGCA
65 TTAAAGACACTATGGCA
94325769 TCATATTAGA
Statistics
Matches: 71, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
89 53 0.75
90 18 0.25
ACGTcount: A:0.45, C:0.15, G:0.19, T:0.21
Consensus pattern (90 bp):
AAATGAATAAAACCATAGTTGAAAGACACTATGGCAACATACTGGAAACGAATAAAACCATAGTT
TAAAGACACTATGGCACTATACCGG
Found at i:94325781 original size:45 final size:45
Alignment explanation
Indices: 94325599--94325791 Score: 198
Period size: 45 Copynumber: 4.3 Consensus size: 45
94325589 TTGGCATGAA
* * *
94325599 AAATGAATAAGACCATA-TTTGAAGGACATTATGGCAAT-ATACTGG
1 AAATGAATAAGACCATAGTTT-AAAGACACTATGGC-ATCATACCGG
* * *
94325644 AAACGAATAAAACCATAG-TTGAAGACACTATGGCA-CTATACCGG
1 AAATGAATAAGACCATAGTTTAAAGACACTATGGCATC-ATACCGG
* * *
94325688 AAATGAATAAAACCATAGTTGAAAGACACTATGGCAACATGA-CGG
1 AAATGAATAAGACCATAGTTTAAAGACACTATGGCATCAT-ACCGG
***
94325733 AAATGAATAAGACCATAGTTTAAAGACACTATGGCATCATATTAG
1 AAATGAATAAGACCATAGTTTAAAGACACTATGGCATCATACCGG
*
94325778 AAATAAATAAGACC
1 AAATGAATAAGACC
94325792 GGGGCTAAAA
Statistics
Matches: 126, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
43 1 0.01
44 35 0.28
45 88 0.70
46 2 0.02
ACGTcount: A:0.46, C:0.15, G:0.18, T:0.22
Consensus pattern (45 bp):
AAATGAATAAGACCATAGTTTAAAGACACTATGGCATCATACCGG
Found at i:94328281 original size:25 final size:25
Alignment explanation
Indices: 94328253--94328322 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
94328243 CTCTTTTAAT
*
94328253 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
94328278 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
94328303 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
94328323 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:94328741 original size:27 final size:27
Alignment explanation
Indices: 94328525--94328741 Score: 290
Period size: 27 Copynumber: 8.0 Consensus size: 27
94328515 GGGGAAAAAT
* * * *
94328525 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
94328552 AGTAATTCTACCCTACAAGTGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
94328579 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
94328606 GATAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
94328633 AGTAATTCTACCTTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
94328660 GGTAATTCTACCCTACAGGGTTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
94328687 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
94328714 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
94328741 G
1 G
94328742 ATATTTTACA
Statistics
Matches: 168, Mismatches: 22, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 168 1.00
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:94329653 original size:27 final size:27
Alignment explanation
Indices: 94328760--94329639 Score: 1652
Period size: 27 Copynumber: 32.6 Consensus size: 27
94328750 CAAATCGAGA
* * **
94328760 GTATTTTGATAATTTCACAAATCAGGG
1 GTATTTTGGTAATTTTACAAGCCAGGG
94328787 GTATTTTGGTAATTTTACAAGCCAGGG
1 GTATTTTGGTAATTTTACAAGCCAGGG
94328814 GTATTTTGGTAATTTTACAAGCCAGGG
1 GTATTTTGGTAATTTTACAAGCCAGGG
94328841 GTATTTTGGTAATTTTACAAGCCAGGG
1 GTATTTTGGTAATTTTACAAGCCAGGG
94328868 GTATTTTGGTAATTTTACAAGCCAGGG
1 GTATTTTGGTAATTTTACAAGCCAGGG
94328895 GTATTTTGGTAATTTTACAAGCCAGGG
1 GTATTTTGGTAATTTTACAAGCCAGGG
94328922 GTATTTTGGTAATTTTACAAGCCAGGG
1 GTATTTTGGTAATTTTACAAGCCAGGG
94328949 GTATTTTGGTAATTTTACAAGCCAGGG
1 GTATTTTGGTAATTTTACAAGCCAGGG
94328976 GTATTTTGGTAATTTTACAAGCCAGGG
1 GTATTTTGGTAATTTTACAAGCCAGGG
94329003 GTATTTTGGTAATTTTACAAGCCAGGG
1 GTATTTTGGTAATTTTACAAGCCAGGG
94329030 GTATTTTGGTAATTTTACAAGCCAGGG
1 GTATTTTGGTAATTTTACAAGCCAGGG
94329057 GTATTTTGGTAATTTTACAAGCCAGGG
1 GTATTTTGGTAATTTTACAAGCCAGGG
94329084 GTATTTTGGTAATTTTACAAGCCAGGG
1 GTATTTTGGTAATTTTACAAGCCAGGG
94329111 GTATTTTGGTAATTTTACAAGCCAGGG
1 GTATTTTGGTAATTTTACAAGCCAGGG
94329138 GTATTTTGGTAATTTTACAAGCCAGGG
1 GTATTTTGGTAATTTTACAAGCCAGGG
94329165 GTATTTTGGTAATTTTACAAGCCAGGG
1 GTATTTTGGTAATTTTACAAGCCAGGG
94329192 GTATTTTGGTAATTTTACAAGCCAGGG
1 GTATTTTGGTAATTTTACAAGCCAGGG
94329219 GTATTTTGGTAATTTTACAAGCCAGGG
1 GTATTTTGGTAATTTTACAAGCCAGGG
94329246 GTATTTTGGTAATTTTACAAGCCAGGG
1 GTATTTTGGTAATTTTACAAGCCAGGG
94329273 GTATTTTGGTAATTTTACAAGCCAGGG
1 GTATTTTGGTAATTTTACAAGCCAGGG
94329300 GTATTTTGGTAATTTTACAAGCCAGGG
1 GTATTTTGGTAATTTTACAAGCCAGGG
94329327 GTATTTTGGTAATTTTACAAGCCAGGG
1 GTATTTTGGTAATTTTACAAGCCAGGG
94329354 GTATTTTGGTAATTTTACAAGCCAGGG
1 GTATTTTGGTAATTTTACAAGCCAGGG
94329381 GTATTTTGGTAATTTTACAAGCCAGGG
1 GTATTTTGGTAATTTTACAAGCCAGGG
94329408 GTATTTTGGTAATTTTACAAGCCAGGG
1 GTATTTTGGTAATTTTACAAGCCAGGG
94329435 GTATTTTGGTAATTTTACAAGCCAGGG
1 GTATTTTGGTAATTTTACAAGCCAGGG
94329462 GTATTTTGGTAATTTTACAAGCCAGGG
1 GTATTTTGGTAATTTTACAAGCCAGGG
94329489 GTATTTTGGTAATTTTACAAGCCAGGG
1 GTATTTTGGTAATTTTACAAGCCAGGG
* * **
94329516 GTATTTTGATAATTTCACAAATCAGGG
1 GTATTTTGGTAATTTTACAAGCCAGGG
94329543 GTATTTTGGTAATTTTACAAGCCAGGG
1 GTATTTTGGTAATTTTACAAGCCAGGG
*
94329570 GTATTTTGGTAATTTTACAAACCAGGG
1 GTATTTTGGTAATTTTACAAGCCAGGG
** *
94329597 GTATTTTAATAATTTTACAAACCAGGG
1 GTATTTTGGTAATTTTACAAGCCAGGG
94329624 GTATTTTGGTAATTTT
1 GTATTTTGGTAATTTT
94329640 GCTAATCGAG
Statistics
Matches: 836, Mismatches: 17, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 836 1.00
ACGTcount: A:0.27, C:0.11, G:0.25, T:0.38
Consensus pattern (27 bp):
GTATTTTGGTAATTTTACAAGCCAGGG
Found at i:94330780 original size:27 final size:26
Alignment explanation
Indices: 94330743--94330854 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
94330733 AGCATGGCTG
* *
94330743 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
94330769 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
94330797 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
94330824 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
94330851 CCAG
1 CCAG
94330855 GACGCTTCCT
Statistics
Matches: 78, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
26 5 0.06
27 56 0.72
28 17 0.22
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:94330802 original size:54 final size:54
Alignment explanation
Indices: 94330743--94330854 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
94330733 AGCATGGCTG
*
94330743 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
94330797 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
94330851 CCAG
1 CCAG
94330855 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:94334858 original size:31 final size:30
Alignment explanation
Indices: 94334785--94334867 Score: 109
Period size: 29 Copynumber: 2.8 Consensus size: 30
94334775 TTCATTCTCG
*
94334785 ACATATACTGGGCCGAAGCC-TTTCGTATA
1 ACATATACTGGGCCGAAGCCTTTTCATATA
94334814 ACGAT-TACTGGGCCGAAGCCTTTTCATA-A
1 AC-ATATACTGGGCCGAAGCCTTTTCATATA
94334843 ATCATATCACTGGGCCGAAGCCTTT
1 A-CATAT-ACTGGGCCGAAGCCTTT
94334868 ACTGTAAACG
Statistics
Matches: 48, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
29 21 0.44
30 10 0.21
31 17 0.35
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (30 bp):
ACATATACTGGGCCGAAGCCTTTTCATATA
Found at i:94335108 original size:24 final size:25
Alignment explanation
Indices: 94335081--94335132 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
94335071 GCCTAGCCTC
94335081 TTTTAAT-AACTAGGGCAAAGCCCT
1 TTTTAATAAACTAGGGCAAAGCCCT
* *
94335105 TTTTGATAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTAGGGCAAAGCCCT
94335130 TTT
1 TTT
94335133 CGGTAAACTG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 6 0.24
25 19 0.76
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (25 bp):
TTTTAATAAACTAGGGCAAAGCCCT
Found at i:94335122 original size:25 final size:25
Alignment explanation
Indices: 94335088--94335157 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
94335078 CTCTTTTAAT
* *
94335088 AACTAGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
94335113 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
94335138 AACTGGGGCATAA-CCCTTTT
1 AACTGGGGCA-AAGCCCTTTT
94335158 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 39 0.95
26 2 0.05
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:94335389 original size:27 final size:27
Alignment explanation
Indices: 94335359--94335602 Score: 308
Period size: 27 Copynumber: 9.0 Consensus size: 27
94335349 GGGGAAAAAT
* * * * *
94335359 GGTAATTTTACCCCACAAGGGTCTCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
94335386 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
94335413 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
94335440 GATAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
94335467 AGTAATTCTACACTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
94335494 GGTAATTTTACCCTACAGGGTTATTTA
1 GGTAATTCTACCCTACAGGGGTATTTC
** * *
94335521 AATAATTCTACCCTACAAGGGTGTTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
94335548 AGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
94335575 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
94335602 G
1 G
94335603 ATATTTTACA
Statistics
Matches: 184, Mismatches: 33, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 184 1.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:94335674 original size:80 final size:80
Alignment explanation
Indices: 94335590--94335745 Score: 201
Period size: 80 Copynumber: 1.9 Consensus size: 80
94335580 TTCTACCCTA
*
94335590 CAGGGGTATTTCGAT-ATTTTACAAATCGAGAGTATTTT-GATAATTTCACAAA-TCAGGGGTAT
1 CAGGGGTATTTCGATAATTTTACAAA-CCAGAGTATTTTAG-TAATTTCACAAACT-AGGGGTAT
94335652 TTTAGTAATTTTACAAGC
63 TTTAGTAATTTTACAAGC
* * * * *
94335670 CAGGGGTATTTTGGTAATTTTACAGACCAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTT
1 CAGGGGTATTTCGATAATTTTACAAACCAGAGTATTTTAGTAATTTCACAAACTAGGGGTATTTT
*
94335735 GGTAATTTTAC
66 AGTAATTTTAC
94335746 TAATCGAAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
80 55 0.83
81 11 0.17
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (80 bp):
CAGGGGTATTTCGATAATTTTACAAACCAGAGTATTTTAGTAATTTCACAAACTAGGGGTATTTT
AGTAATTTTACAAGC
Found at i:94335703 original size:53 final size:54
Alignment explanation
Indices: 94335621--94335745 Score: 189
Period size: 53 Copynumber: 2.3 Consensus size: 54
94335611 CAAATCGAGA
* * * *
94335621 GTATTTTGATAATTTCACAAATCAGGGGTATTTTAGTAATTTTACAAGCCAGGG
1 GTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACCAGGG
* *
94335675 GTATTTTGGTAATTTTACAGACCA-GGGTATTTTAGTAATTTTACAAACTAGGG
1 GTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACCAGGG
94335728 GTATTTTGGTAATTTTAC
1 GTATTTTGGTAATTTTAC
94335746 TAATCGAAGG
Statistics
Matches: 65, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
53 45 0.69
54 20 0.31
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.41
Consensus pattern (54 bp):
GTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACCAGGG
Found at i:94335757 original size:27 final size:27
Alignment explanation
Indices: 94335549--94335750 Score: 162
Period size: 27 Copynumber: 7.5 Consensus size: 27
94335539 GGGTGTTTCA
** * *
94335549 GTAATTTTACCCTACAGGGGTATTTCG
1 GTAATTTTACAATCCAGGGGTATTTTG
* ** * *
94335576 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTTTACAATCCAGGGGTATTTTG
* * *
94335603 AT-ATTTTACAAATCGA-GAGTATTTTG
1 GTAATTTTAC-AATCCAGGGGTATTTTG
* * *
94335629 ATAATTTCACAAAT-CAGGGGTATTTTA
1 GTAATTTTAC-AATCCAGGGGTATTTTG
*
94335656 GTAATTTTACAAGCCAGGGGTATTTTG
1 GTAATTTTACAATCCAGGGGTATTTTG
*
94335683 GTAATTTTACAGA-CCA-GGGTATTTTA
1 GTAATTTTACA-ATCCAGGGGTATTTTG
* *
94335709 GTAATTTTACAAACTAGGGGTATTTTG
1 GTAATTTTACAATCCAGGGGTATTTTG
94335736 GTAATTTTACTAATC
1 GTAATTTTAC-AATC
94335751 GAAGGTAAAA
Statistics
Matches: 146, Mismatches: 21, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
25 1 0.01
26 41 0.28
27 100 0.68
28 4 0.03
ACGTcount: A:0.29, C:0.13, G:0.19, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAATCCAGGGGTATTTTG
Found at i:94335765 original size:80 final size:80
Alignment explanation
Indices: 94335621--94335768 Score: 176
Period size: 80 Copynumber: 1.9 Consensus size: 80
94335611 CAAATCGAGA
* ***
94335621 GTATTTTGATAATTTCACAAATCAGGGGTATTTTAGTAATTTTACAAGCCAGGGGTATTTTGGTA
1 GTATTTTGATAATTTCACAAATCAGGGGTATTTTAGTAATTTTACAAGCCAGAGGTAAAATGGTA
94335686 ATTTTACAGACCAGG
66 ATTTTACAGACCAGG
* * * *
94335701 GTATTTT-AGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACTAATCGA-AGGTAAAATG
1 GTATTTTGA-TAATTTCACAAATC-AGGGGTATTTTAGTAATTTTAC-AAGCCAGAGGTAAAATG
94335763 GTAATT
63 GTAATT
94335769 CTGTAAATCG
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
79 2 0.04
80 51 0.89
81 4 0.07
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (80 bp):
GTATTTTGATAATTTCACAAATCAGGGGTATTTTAGTAATTTTACAAGCCAGAGGTAAAATGGTA
ATTTTACAGACCAGG
Found at i:94336919 original size:21 final size:21
Alignment explanation
Indices: 94336907--94336946 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
94336897 ATACTTAAGT
94336907 ATAATATAATAATATAATATA
1 ATAATATAATAATATAATATA
94336928 ATAATATAATAATATAATA
1 ATAATATAATAATATAATA
94336947 ATACATAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (21 bp):
ATAATATAATAATATAATATA
Found at i:94336920 original size:8 final size:8
Alignment explanation
Indices: 94336907--94336949 Score: 65
Period size: 8 Copynumber: 5.8 Consensus size: 8
94336897 ATACTTAAGT
94336907 ATAATATA
1 ATAATATA
94336915 AT-A-AT-
1 ATAATATA
94336920 ATAATATA
1 ATAATATA
94336928 ATAATATA
1 ATAATATA
94336936 ATAATATA
1 ATAATATA
94336944 ATAATA
1 ATAATA
94336950 CATAAAGTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
5 2 0.06
6 3 0.09
7 3 0.09
8 24 0.75
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (8 bp):
ATAATATA
Found at i:94336933 original size:16 final size:17
Alignment explanation
Indices: 94336912--94336954 Score: 63
Period size: 16 Copynumber: 2.6 Consensus size: 17
94336902 TAAGTATAAT
94336912 ATAATAAT-ATAATATA
1 ATAATAATAATAATATA
94336928 ATAAT-ATAATAATATA
1 ATAATAATAATAATATA
94336944 ATAATACATAA
1 ATAATA-ATAA
94336955 AGTAAATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
15 2 0.08
16 18 0.75
18 4 0.17
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (17 bp):
ATAATAATAATAATATA
Found at i:94336946 original size:13 final size:13
Alignment explanation
Indices: 94336906--94336938 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
94336896 AATACTTAAG
94336906 TATAATATAATAA
1 TATAATATAATAA
94336919 TATAATATAATAA
1 TATAATATAATAA
94336932 TATAATA
1 TATAATA
94336939 ATATAATAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
TATAATATAATAA
Found at i:94337864 original size:27 final size:27
Alignment explanation
Indices: 94337834--94338174 Score: 373
Period size: 27 Copynumber: 12.6 Consensus size: 27
94337824 GTTGTGCGTG
**
94337834 AAAATTACCAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCTTGGTTTGT
*
94337861 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* * *
94337888 AAAATTACTAAAATACCCTTTGTTTAT
1 AAAATTACCAAAATACCCTTGGTTTGT
94337915 AAAATTACCAAAATACCAC-TGGTTTGT
1 AAAATTACCAAAATACC-CTTGGTTTGT
*
94337942 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* * *
94337969 AAAATTACTAAAATACCCTTTGTTTAT
1 AAAATTACCAAAATACCCTTGGTTTGT
94337996 AAAATTACCAAAATACCAC-TGGTTTGT
1 AAAATTACCAAAATACC-CTTGGTTTGT
*
94338023 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* *
94338050 AAAATTATCAAAATACCC-CGAGTTTGT
1 AAAATTACCAAAATACCCTTG-GTTTGT
* *
94338077 AAAATTACCAAAATACCCCTGATTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* ** ** *
94338104 GAAATTACTGAAATACCCTCAGTTTGC
1 AAAATTACCAAAATACCCTTGGTTTGT
*** ** * *
94338131 AAAATTATTGAAATTTCCTCGATTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
*
94338158 AAAATTACCAAAGTACC
1 AAAATTACCAAAATACC
94338175 ATTGATTTAC
Statistics
Matches: 265, Mismatches: 43, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
26 3 0.01
27 259 0.98
28 3 0.01
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTGGTTTGT
Found at i:94337969 original size:81 final size:81
Alignment explanation
Indices: 94337834--94338121 Score: 445
Period size: 81 Copynumber: 3.6 Consensus size: 81
94337824 GTTGTGCGTG
**
94337834 AAAATTACCAAAATACC-CTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTA
1 AAAATTACCAAAATACCAC-TGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTA
94337898 AAATACCCTTTGTTTAT
65 AAATACCCTTTGTTTAT
94337915 AAAATTACCAAAATACCACTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAA
1 AAAATTACCAAAATACCACTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAA
94337980 AATACCCTTTGTTTAT
66 AATACCCTTTGTTTAT
94337996 AAAATTACCAAAATACCACTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTA-TCA
1 AAAATTACCAAAATACCACTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACT-A
*** *
94338060 AAATACCCCGAGTTTGT
65 AAATACCCTTTGTTTAT
* * * **
94338077 AAAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCC
1 AAAATTACCAAAATACCACTGGTTTGTAAAATTACCAAAATACCC
94338122 TCAGTTTGCA
Statistics
Matches: 194, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
80 1 0.01
81 192 0.99
82 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (81 bp):
AAAATTACCAAAATACCACTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAA
AATACCCTTTGTTTAT
Found at i:94338129 original size:81 final size:81
Alignment explanation
Indices: 94337834--94338175 Score: 422
Period size: 81 Copynumber: 4.2 Consensus size: 81
94337824 GTTGTGCGTG
**
94337834 AAAATTACCAAAATACC-CTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTA
1 AAAATTACCAAAATACCAC-TGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTA
***
94337898 AAATACCCTTTGTTTAT
65 AAATACCCCGAGTTTAT
94337915 AAAATTACCAAAATACCACTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAA
1 AAAATTACCAAAATACCACTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAA
***
94337980 AATACCCTTTGTTTAT
66 AATACCCCGAGTTTAT
94337996 AAAATTACCAAAATACCACTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTA-TCA
1 AAAATTACCAAAATACCACTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACT-A
*
94338060 AAATACCCCGAGTTTGT
65 AAATACCCCGAGTTTAT
* * * ** * * *
94338077 AAAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATA-CCCTCAGTTTGCAAAATTATTG
1 AAAATTACCAAAATACCACTGGTTTGTAAAATTACCAAAATACCCCT-GGTTTGTAAAATTACT-
* * * *
94338141 AAATTTCCTCGA-TTTGT
64 AAAATACCCCGAGTTTAT
*
94338158 AAAATTACCAAAGTACCA
1 AAAATTACCAAAATACCA
94338176 TTGATTTACA
Statistics
Matches: 238, Mismatches: 19, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
80 5 0.02
81 222 0.93
82 11 0.05
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.32
Consensus pattern (81 bp):
AAAATTACCAAAATACCACTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAA
AATACCCCGAGTTTAT
Found at i:94338244 original size:27 final size:27
Alignment explanation
Indices: 94338214--94338436 Score: 277
Period size: 27 Copynumber: 8.3 Consensus size: 27
94338204 CGATTTACAA
** *
94338214 AATTACCGAAATAATCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
94338241 AATTACCAAAATACCCCTGTAGGGCAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
94338268 AATTATCGAAATACCCCTATAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
94338295 AATTACCAAAATACCCCTGTATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
94338322 AATTATCGAAATACCCCTCTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
94338349 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
94338376 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
94338403 AATTACCGAGATA-CCCTCGTAGGGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
94338430 AATTACC
1 AATTACC
94338437 ATTTTGCCCC
Statistics
Matches: 166, Mismatches: 29, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
26 4 0.02
27 162 0.98
ACGTcount: A:0.37, C:0.21, G:0.18, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:94338817 original size:22 final size:22
Alignment explanation
Indices: 94338784--94338842 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
94338774 CACGTTATCG
94338784 ATGGC-TCTGTGCCAACCTAAAT
1 ATGGCTTC-GTGCCAACCTAAAT
* * * *
94338806 ATGGCTTCGTGCCATCTTGACT
1 ATGGCTTCGTGCCAACCTAAAT
94338828 ATGGCTTCGTGCCAA
1 ATGGCTTCGTGCCAA
94338843 ACGTATTTAC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
22 29 0.94
23 2 0.06
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.31
Consensus pattern (22 bp):
ATGGCTTCGTGCCAACCTAAAT
Found at i:94339029 original size:27 final size:26
Alignment explanation
Indices: 94338999--94339106 Score: 117
Period size: 27 Copynumber: 4.0 Consensus size: 26
94338989 ATTCTGTTAA
* *
94338999 GTGGCTTTGCCACATTATCTGATTCTG
1 GTGGCTATGCCACAATATCTG-TTCTG
94339026 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTATGCCAC-AATATCTGTTCTG
* *
94339053 GTGGCTCTGCCAAAATATCTGTATCTG
1 GTGGCTATGCCACAATATCTGT-TCTG
* * **
94339080 GTGACTCTATCACAATATCTGTTCTG
1 GTGGCTATGCCACAATATCTGTTCTG
94339106 G
1 G
94339107 CAGCCATGCT
Statistics
Matches: 71, Mismatches: 8, Indels: 5
0.85 0.10 0.06
Matches are distributed among these distances:
26 14 0.20
27 50 0.70
28 7 0.10
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.36
Consensus pattern (26 bp):
GTGGCTATGCCACAATATCTGTTCTG
Found at i:94339272 original size:31 final size:31
Alignment explanation
Indices: 94339228--94339302 Score: 87
Period size: 31 Copynumber: 2.4 Consensus size: 31
94339218 ATTCACATTC
* *
94339228 TGATTTTGATTCTGTTACCTGATACTGATTT
1 TGATTCTGATTCTGTCACCTGATACTGATTT
* * *
94339259 TGATTCTGGTTCTGTCACCTGATTCTGATTC
1 TGATTCTGATTCTGTCACCTGATACTGATTT
* *
94339290 TAATTCTAATTCT
1 TGATTCTGATTCT
94339303 AGTTCTGATA
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (31 bp):
TGATTCTGATTCTGTCACCTGATACTGATTT
Found at i:94341322 original size:32 final size:32
Alignment explanation
Indices: 94341284--94341348 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
94341274 ATAGATTATG
*
94341284 AAGGTTTATTGATAGATTTATTAGTTTTGTAA
1 AAGGTTTATTGATAGATTTACTAGTTTTGTAA
94341316 AAGGTTTATTGATAGATTTACTAGTTTTGTAA
1 AAGGTTTATTGATAGATTTACTAGTTTTGTAA
94341348 A
1 A
94341349 GTGATTTTTG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.32, C:0.02, G:0.18, T:0.48
Consensus pattern (32 bp):
AAGGTTTATTGATAGATTTACTAGTTTTGTAA
Found at i:94341993 original size:24 final size:26
Alignment explanation
Indices: 94341934--94342002 Score: 88
Period size: 24 Copynumber: 2.7 Consensus size: 26
94341924 GCAGACTCAC
*
94341934 CTCAGCTCGTATGAGCTTAGCGATAT
1 CTCAGCTCGTAAGAGCTTAGCGATAT
* *
94341960 ATCAGCTCGTAAGAGCTTA-CTAT-T
1 CTCAGCTCGTAAGAGCTTAGCGATAT
*
94341984 CTCAGCTCGTTAGAGCTTA
1 CTCAGCTCGTAAGAGCTTA
94342003 ATGTTTTATC
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
24 18 0.47
25 3 0.08
26 17 0.45
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (26 bp):
CTCAGCTCGTAAGAGCTTAGCGATAT
Found at i:94342221 original size:20 final size:19
Alignment explanation
Indices: 94342175--94342229 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
94342165 ATTCTGTTAA
*
94342175 CGATTATACGAATGAATTC
1 CGATTATATGAATGAATTC
* *
94342194 CTGGTTATATAAATGAATTC
1 C-GATTATATGAATGAATTC
94342214 TCGATTATATGAATGA
1 -CGATTATATGAATGA
94342230 GAAGGAATTG
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
19 1 0.03
20 27 0.93
21 1 0.03
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.36
Consensus pattern (19 bp):
CGATTATATGAATGAATTC
Found at i:94343042 original size:30 final size:30
Alignment explanation
Indices: 94343006--94343073 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 30
94342996 TGTGTCTCGA
94343006 CCGTGTGTGATTCACA-G-TCATGTTATACGG
1 CCGTGTGTGA--CACACGATCATGTTATACGG
*
94343036 CCGTGTGTGACATACGATCATGTTATACGG
1 CCGTGTGTGACACACGATCATGTTATACGG
*
94343066 CTGTGTGT
1 CCGTGTGT
94343074 CCCTTGGTGT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
28 3 0.09
29 1 0.03
30 30 0.88
ACGTcount: A:0.19, C:0.19, G:0.28, T:0.34
Consensus pattern (30 bp):
CCGTGTGTGACACACGATCATGTTATACGG
Found at i:94351544 original size:38 final size:37
Alignment explanation
Indices: 94351510--94351715 Score: 204
Period size: 38 Copynumber: 5.5 Consensus size: 37
94351500 GAAGGCTATA
*
94351510 TGCTGG-AATTATATTCGGGCTAAATCCCGCAGGCTTTG
1 TGCTGGTAA-TATATTCGGGTTAAATCCCGCAGGC-TTG
* * *
94351548 TGCTGGTAATATATCCGAGTTAAATCCCGCAGGTTTCG
1 TGCTGGTAATATATTCGGGTTAAATCCCGCAGGCTT-G
* *
94351586 TGCTGGTAATATA-TCTGGGTTAAATCCTGCAGGCGTCG
1 TGCTGGTAATATATTC-GGGTTAAATCCCGCAGGC-TTG
* * * *
94351624 TGCT-GCAATATATCCGGGTTAAACCCCGCAAGCTTCG
1 TGCTGGTAATATATTCGGGTTAAATCCCGCAGGCTT-G
*
94351661 TGCTGGTAATATA-TCTGGGTTAAATCCCGCAGGCCTAG
1 TGCTGGTAATATATTC-GGGTTAAATCCCGCAGG-CTTG
*
94351699 TGCTGGTATTATATTCG
1 TGCTGGTAATATATTCG
94351716 TGCCTTCGTG
Statistics
Matches: 137, Mismatches: 21, Indels: 20
0.77 0.12 0.11
Matches are distributed among these distances:
36 1 0.01
37 31 0.23
38 98 0.72
39 7 0.05
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.31
Consensus pattern (37 bp):
TGCTGGTAATATATTCGGGTTAAATCCCGCAGGCTTG
Found at i:94351664 original size:75 final size:75
Alignment explanation
Indices: 94351530--94351703 Score: 249
Period size: 75 Copynumber: 2.3 Consensus size: 75
94351520 ATATTCGGGC
* * * * * *
94351530 TAAATCCCGCAGGCTTTGTGCTGGTAATATATCCGAGTTAAATCCCGCAGGTTTCGTGCTGGTAA
1 TAAATCCCGCAGGCCTAGTGCT-GCAATATATCCGAGTTAAACCCCGCAAGCTTCGTGCTGGTAA
94351595 TATATCTGGGT
65 TATATCTGGGT
* * * *
94351606 TAAATCCTGCAGGCGTCGTGCTGCAATATATCCGGGTTAAACCCCGCAAGCTTCGTGCTGGTAAT
1 TAAATCCCGCAGGCCTAGTGCTGCAATATATCCGAGTTAAACCCCGCAAGCTTCGTGCTGGTAAT
94351671 ATATCTGGGT
66 ATATCTGGGT
94351681 TAAATCCCGCAGGCCTAGTGCTG
1 TAAATCCCGCAGGCCTAGTGCTG
94351704 GTATTATATT
Statistics
Matches: 87, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
75 68 0.78
76 19 0.22
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.29
Consensus pattern (75 bp):
TAAATCCCGCAGGCCTAGTGCTGCAATATATCCGAGTTAAACCCCGCAAGCTTCGTGCTGGTAAT
ATATCTGGGT
Found at i:94351771 original size:43 final size:43
Alignment explanation
Indices: 94351710--94351864 Score: 247
Period size: 43 Copynumber: 3.6 Consensus size: 43
94351700 GCTGGTATTA
* * *
94351710 TATTCGTGCCTTCGTGCCTAGTAGGCTTCGTGCCGGTGATGTC
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
94351753 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
94351796 TATTCGGGCTTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
94351839 TATTCGGGCCTTCGTGTCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
94351865 GTAATGCCGG
Statistics
Matches: 103, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 103 1.00
ACGTcount: A:0.11, C:0.25, G:0.32, T:0.32
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:94353539 original size:48 final size:48
Alignment explanation
Indices: 94353445--94353548 Score: 113
Period size: 48 Copynumber: 2.2 Consensus size: 48
94353435 TGTGCTAAGC
* * * *
94353445 GTAAGACCTATCTGGGATAGGCATCGGCACAGCCCAGTGAGTGCTAGT
1 GTAAGACCTATCTGGGATAGGCATCAGCACAGCCCAGAGAGAGCTAGA
**
94353493 GTAAGACCTATC-GGGAATAGGCATCAGCAC-GGGCAGAGCAGAGCTAGA
1 GTAAGACCTATCTGGG-ATAGGCATCAGCACAGCCCAGAG-AGAGCTAGA
*
94353541 ATAAGACC
1 GTAAGACC
94353549 ATAGTTGGAC
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
47 8 0.17
48 39 0.83
ACGTcount: A:0.31, C:0.22, G:0.31, T:0.16
Consensus pattern (48 bp):
GTAAGACCTATCTGGGATAGGCATCAGCACAGCCCAGAGAGAGCTAGA
Found at i:94357004 original size:38 final size:38
Alignment explanation
Indices: 94356960--94357181 Score: 340
Period size: 38 Copynumber: 5.8 Consensus size: 38
94356950 GGCCTAAAGA
* *
94356960 CCCGCAGGCTAT-ATGCTGG-AATTATATCCGGGTTAAAA
1 CCCGCAGGCT-TCGTGCTGGTAA-TATATCCGGGTTAAAT
94356998 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
94357036 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
94357074 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
* *
94357112 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
* * * *
94357150 CCCGCAGGCCTAGTGCTGGTATTATATTCGGG
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGG
94357182 CCTTCGTGCC
Statistics
Matches: 175, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
37 1 0.01
38 172 0.98
39 2 0.01
ACGTcount: A:0.22, C:0.23, G:0.27, T:0.28
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
Found at i:94357298 original size:43 final size:43
Alignment explanation
Indices: 94357174--94357285 Score: 224
Period size: 43 Copynumber: 2.6 Consensus size: 43
94357164 GCTGGTATTA
94357174 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
94357217 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
94357260 TATTCGGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
94357286 GTAATGCCGG
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 69 1.00
ACGTcount: A:0.10, C:0.27, G:0.34, T:0.29
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:94357908 original size:10 final size:10
Alignment explanation
Indices: 94357893--94357923 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
94357883 CGGGTCAGGG
94357893 TGTGAAAGTA
1 TGTGAAAGTA
94357903 TGTGAAAGTA
1 TGTGAAAGTA
94357913 TGTGAAAGTA
1 TGTGAAAGTA
94357923 T
1 T
94357924 TTGATTTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.39, C:0.00, G:0.29, T:0.32
Consensus pattern (10 bp):
TGTGAAAGTA
Found at i:94359780 original size:74 final size:74
Alignment explanation
Indices: 94359659--94359807 Score: 253
Period size: 74 Copynumber: 2.0 Consensus size: 74
94359649 TGACTAAAGT
* *
94359659 ATCTATGATGTGATATGTTGCTGTAGTCCAAAGTTCCGGATTTTTGGTAAAAAGAGATACATGTG
1 ATCTATGATGTGATATGTTGCTGTAGACCAAAGTTCCAGATTTTTGGTAAAAAGAGATACATGTG
94359724 AAGAATGGA
66 AAGAATGGA
* * *
94359733 ATCTATGATGTGATCTGTTGCTGTAGACCAGAGTTCTAGATTTTTGGTAAAAAGAGATACATGTG
1 ATCTATGATGTGATATGTTGCTGTAGACCAAAGTTCCAGATTTTTGGTAAAAAGAGATACATGTG
94359798 AAGAATGGA
66 AAGAATGGA
94359807 A
1 A
94359808 AATTGCGATT
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
74 70 1.00
ACGTcount: A:0.33, C:0.09, G:0.26, T:0.32
Consensus pattern (74 bp):
ATCTATGATGTGATATGTTGCTGTAGACCAAAGTTCCAGATTTTTGGTAAAAAGAGATACATGTG
AAGAATGGA
Found at i:94363521 original size:66 final size:69
Alignment explanation
Indices: 94363431--94363560 Score: 176
Period size: 66 Copynumber: 1.9 Consensus size: 69
94363421 ACATGGTGAA
* * *
94363431 CACTTAGTACCACTCATGCGACCTAGCCA-ATTTGT-CT-CGTAGCTCTCTTGTCTACATGGTGT
1 CACTTAGAACCACGCATGCGACCTAGCCACATTTATCCTCCGTAGCTCTCTTGTCTACATGGTGT
94363493 CCTT
66 CCTT
* *
94363497 CACTTAGAATCACGCATGCGACCTAGCTACATTTATCCCTCCCGTAGCTCTCTTGTCTACATGG
1 CACTTAGAACCACGCATGCGACCTAGCCACATTTAT-CCT-CCGTAGCTCTCTTGTCTACATGG
94363561 GATACATCCC
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
66 25 0.46
67 5 0.09
69 2 0.04
71 22 0.41
ACGTcount: A:0.20, C:0.32, G:0.16, T:0.32
Consensus pattern (69 bp):
CACTTAGAACCACGCATGCGACCTAGCCACATTTATCCTCCGTAGCTCTCTTGTCTACATGGTGT
CCTT
Found at i:94372823 original size:38 final size:37
Alignment explanation
Indices: 94372781--94372912 Score: 176
Period size: 38 Copynumber: 3.5 Consensus size: 37
94372771 GGCCTAAAGA
* *
94372781 CCCGCAGGCTAT-ATGCTGGAATTATATCCGGGTTAATT
1 CCCGCAGGCT-TCGTGCTGGAA-TATATCCGGGTTAAAT
94372819 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGG-AATATATCCGGGTTAAAT
**
94372857 CCCGCAGGCTTCGTGCTATAATATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGAATATATCCGGGTTAAAT
* *
94372894 CCCGCAGGCCTAGTGCTGG
1 CCCGCAGGCTTCGTGCTGG
94372913 TATTATATTC
Statistics
Matches: 84, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
37 34 0.40
38 48 0.57
39 2 0.02
ACGTcount: A:0.21, C:0.25, G:0.26, T:0.28
Consensus pattern (37 bp):
CCCGCAGGCTTCGTGCTGGAATATATCCGGGTTAAAT
Found at i:94372888 original size:37 final size:38
Alignment explanation
Indices: 94372803--94372925 Score: 176
Period size: 38 Copynumber: 3.3 Consensus size: 38
94372793 ATGCTGGAAT
* *
94372803 TATATCCGGGTTAATTCCCGCAGGCTTCGTGCTGGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGATAA
94372841 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCT-ATAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGATAA
* * * *
94372878 TATATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGATAA
*
94372916 TATATTCGGG
1 TATATCCGGG
94372926 CCTTCGTGCC
Statistics
Matches: 77, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
37 34 0.44
38 43 0.56
ACGTcount: A:0.21, C:0.23, G:0.25, T:0.31
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGATAA
Found at i:94372971 original size:43 final size:43
Alignment explanation
Indices: 94372918--94373244 Score: 489
Period size: 43 Copynumber: 7.6 Consensus size: 43
94372908 GCTGGTATTA
*
94372918 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
*
94372961 TATTCAGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
**
94373004 TATTCGGGCCTTCGTGCCTAATAGGCTTCGTGCC-AGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGA-TGATGTG
* *
94373047 TATTCGGACCTTCATGCCTAGCAGGCTTCGTGCCGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
* *
94373090 TATTCGGGCATTCGTGCCTAGCAGGCTTCATGCC-AGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGA-TGATGTG
* * *
94373133 TATTCAGACCTTCATGCCTAGCAGGCTTCGTGCCGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
*
94373176 TATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGCC-AGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGA-TGATGTG
*
94373219 TATTCAGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
94373245 GTAATACCGG
Statistics
Matches: 255, Mismatches: 24, Indels: 10
0.88 0.08 0.03
Matches are distributed among these distances:
42 3 0.01
43 250 0.98
44 2 0.01
ACGTcount: A:0.15, C:0.25, G:0.29, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
Found at i:94373065 original size:86 final size:86
Alignment explanation
Indices: 94372918--94373244 Score: 541
Period size: 86 Copynumber: 3.8 Consensus size: 86
94372908 GCTGGTATTA
* *
94372918 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACC-GATGATGTGTATTCAGGCCTTCGTGCCTAG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAG-TGATGTGTATTCAGGCCTTCATGCCTAG
94372982 CAGGCTTCGTGCCGATGATGTG
65 CAGGCTTCGTGCCGATGATGTG
**
94373004 TATTCGGGCCTTCGTGCCTAATAGGCTTCGTGCCAGTGATGTGTATTC-GGACCTTCATGCCTAG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTGTATTCAGG-CCTTCATGCCTAG
94373068 CAGGCTTCGTGCCGATGATGTG
65 CAGGCTTCGTGCCGATGATGTG
* * *
94373090 TATTCGGGCATTCGTGCCTAGCAGGCTTCATGCCAGTGATGTGTATTCAGACCTTCATGCCTAGC
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTGTATTCAGGCCTTCATGCCTAGC
94373155 AGGCTTCGTGCCGATGATGTG
66 AGGCTTCGTGCCGATGATGTG
* *
94373176 TATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGCCAGTGATGTGTATTCAGGCCTTCGTGCCTAGC
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTGTATTCAGGCCTTCATGCCTAGC
94373241 AGGC
66 AGGC
94373245 GTAATACCGG
Statistics
Matches: 224, Mismatches: 14, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
85 2 0.01
86 220 0.98
87 2 0.01
ACGTcount: A:0.15, C:0.25, G:0.29, T:0.31
Consensus pattern (86 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTGTATTCAGGCCTTCATGCCTAGC
AGGCTTCGTGCCGATGATGTG
Found at i:94379595 original size:40 final size:39
Alignment explanation
Indices: 94379511--94379695 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
94379501 TCGAATGATG
* * *
94379511 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
94379551 TCCGGACTAAGATCCGAAGGCATTTGTTCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
94379591 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTCACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* *
94379630 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
94379671 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
94379696 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 33 0.27
40 80 0.66
41 9 0.07
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:94379633 original size:79 final size:81
Alignment explanation
Indices: 94379511--94379693 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
94379501 TCGAATGATG
* * *
94379511 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTCACTAAATCCGGACTAAG-TCCCGAAGGCAT
* *
94379574 TTGTTCGAGTTACTA-A
65 TTGTGCAAGTTACTATA
* **
94379590 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTCACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTCACTAAATCCGGACTAAGTCCCGAAGGCAT
94379653 TTGTGCAAGTTACTATA
65 TTGTGCAAGTTACTATA
* *
94379670 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
94379694 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTCACTAAATCCGGACTAAGTCCCGAAGGCATT
TGTGCAAGTTACTATA
Found at i:94379717 original size:79 final size:78
Alignment explanation
Indices: 94379512--94379728 Score: 219
Period size: 79 Copynumber: 2.7 Consensus size: 78
94379502 CGAATGATGT
* *
94379512 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAG-TCCGAAGGCATT
* * *
94379575 TGTTCGAGTTACTAATT
62 TGTGCAAGTTACTAATA
* *
94379592 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTCA-CTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-AGCTATATCC-GGTTAAGT-CCGAAGGCATTT
94379655 GTGCAAGTTACT-ATAA
63 GTGCAAGTTACTAAT-A
* ** *
94379671 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTT-AAGTCCGAAGG
94379729 TACGTGATTC
Statistics
Matches: 115, Mismatches: 13, Indels: 19
0.78 0.09 0.13
Matches are distributed among these distances:
78 3 0.03
79 66 0.57
80 46 0.40
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTGTG
CAAGTTACTAATA
Found at i:94381213 original size:46 final size:44
Alignment explanation
Indices: 94381109--94381234 Score: 144
Period size: 46 Copynumber: 2.7 Consensus size: 44
94381099 ATATTATGAG
* *
94381109 AGCCTGTGTAAGACCATGTCTAGGACATGGCATCAGCATCGAGACA
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCATCGAGACA
* * *
94381155 AGTGCTAGTGTAAGACATGTCTGGGACATGCATTAGCCTCGAGACGTA
1 A--GCCAGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGAC--A
*
94381203 AGCCAGTGTAAGACATGTTTGGGACATGCATC
1 AGCCAGTGTAAGACATGTCTGGGACATGCATC
94381235 GGCTGAGAGA
Statistics
Matches: 68, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
46 43 0.63
47 13 0.19
48 12 0.18
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.23
Consensus pattern (44 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGACA
Found at i:94381256 original size:46 final size:45
Alignment explanation
Indices: 94381109--94381285 Score: 137
Period size: 46 Copynumber: 3.8 Consensus size: 45
94381099 ATATTATGAG
* * *
94381109 AGCCTGTGTAAGACCATGTCTAGGACATGGCATCAGCATCGAGAC--A
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TCGAGACGTA
* * *
94381155 AGTGCTAGTGTAAGACATGTCTGGGACATGCATTAGCCTCGAGACGTA
1 A--GCCAGTGTAAGACATGTCTGGGACATGCA-TCGGCTCGAGACGTA
*
94381203 AGCCAGTGTAAGACATGTTTGGGACATGCATCGGCT-GAGA-GATGA
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTCGAGACG-T-A
* * *
94381248 TAGTCAGTGTAAGACCATATCTGGGATATGACATCGGC
1 -AGCCAGTGTAAGA-CATGTCTGGGACATG-CATCGGC
94381286 ACCTTACCCC
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
43 1 0.01
44 5 0.05
45 5 0.05
46 50 0.47
47 27 0.25
48 19 0.18
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (45 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTCGAGACGTA
Found at i:94383235 original size:40 final size:40
Alignment explanation
Indices: 94383179--94383453 Score: 260
Period size: 41 Copynumber: 6.8 Consensus size: 40
94383169 GCAAAAATTG
* * * * *
94383179 TAAAACACATAGCAATAGCGGCG-TTTTACCAAAAATGCCAC
1 TAAAA-ACAGAGCATTAGCGGCGCTTTT-GCAAAAACGCCGC
* * *
94383220 TAAAAACAGAGCAATAGCGGC-ATTTTAGTAAAAAACGCCGC
1 TAAAAACAGAGCATTAGCGGCGCTTTT-G-CAAAAACGCCGC
* *
94383261 TAAAAACCAGAGCATTAGCGGCGCTTTTGGAAAAATG-CGC
1 TAAAAA-CAGAGCATTAGCGGCGCTTTTGCAAAAACGCCGC
* *
94383301 TAAAAAC-CAGCATTAGCGGCGCTATTGGC-AAAACGCCGC
1 TAAAAACAGAGCATTAGCGGCGCT-TTTGCAAAAACGCCGC
* *
94383340 TAAAAACCAGAGCATTAGCGGCGCTTTTGGAAAAATG-CGC
1 TAAAAA-CAGAGCATTAGCGGCGCTTTTGCAAAAACGCCGC
* *
94383380 TAAAAAC-CAGCATTAGCGGCGCTATTGGC-AAAACGCCGC
1 TAAAAACAGAGCATTAGCGGCGCT-TTTGCAAAAACGCCGC
94383419 TAAAAACCAGAGCATTAGCGGCGCTTTTGGCAAAA
1 TAAAAA-CAGAGCATTAGCGGCGCTTTT-GCAAAA
94383454 TAACCCCTAA
Statistics
Matches: 196, Mismatches: 23, Indels: 29
0.79 0.09 0.12
Matches are distributed among these distances:
38 40 0.20
39 26 0.13
40 45 0.23
41 63 0.32
42 18 0.09
43 4 0.02
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.18
Consensus pattern (40 bp):
TAAAAACAGAGCATTAGCGGCGCTTTTGCAAAAACGCCGC
Found at i:94383254 original size:41 final size:40
Alignment explanation
Indices: 94383179--94383282 Score: 118
Period size: 40 Copynumber: 2.5 Consensus size: 40
94383169 GCAAAAATTG
* * * *
94383179 TAAAACACATAGCAATAGCGGCGTTTTACCAAAAATGCCAC
1 TAAAA-ACAGAGCAATAGCGGCATTTTACAAAAAACGCCAC
* *
94383220 TAAAAACAGAGCAATAGCGGCATTTTAGTAAAAAACGCCGC
1 TAAAAACAGAGCAATAGCGGCATTTTA-CAAAAAACGCCAC
*
94383261 TAAAAACCAGAGCATTAGCGGC
1 TAAAAA-CAGAGCAATAGCGGC
94383283 GCTTTTGGAA
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
40 20 0.37
41 20 0.37
42 14 0.26
ACGTcount: A:0.42, C:0.22, G:0.18, T:0.17
Consensus pattern (40 bp):
TAAAAACAGAGCAATAGCGGCATTTTACAAAAAACGCCAC
Found at i:94383295 original size:41 final size:41
Alignment explanation
Indices: 94383209--94383453 Score: 308
Period size: 41 Copynumber: 6.1 Consensus size: 41
94383199 GCGTTTTACC
* * * * *
94383209 AAAAATGCCACTAAAAA-CAGAGCAATAGCGGC-ATTTTAGTA
1 AAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTT-G-G
94383250 AAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGG
1 AAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGG
* *
94383291 AAAAATG-CGCTAAAAACC--AGCATTAGCGGCGCTATTGG
1 AAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGG
*
94383329 CAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGG
1 AAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGG
* *
94383370 AAAAATG-CGCTAAAAACC--AGCATTAGCGGCGCTATTGG
1 AAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGG
*
94383408 CAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGG
1 AAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGG
*
94383449 CAAAA
1 AAAAA
94383454 TAACCCCTAA
Statistics
Matches: 180, Mismatches: 16, Indels: 16
0.85 0.08 0.08
Matches are distributed among these distances:
38 48 0.27
39 22 0.12
40 22 0.12
41 69 0.38
42 15 0.08
43 4 0.02
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.18
Consensus pattern (41 bp):
AAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGG
Found at i:94383347 original size:79 final size:79
Alignment explanation
Indices: 94383251--94383454 Score: 399
Period size: 79 Copynumber: 2.6 Consensus size: 79
94383241 ATTTTAGTAA
94383251 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGAAAAATGCGCTAAAAACCAGCATTA
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGAAAAATGCGCTAAAAACCAGCATTA
94383316 GCGGCGCTATTGGC
66 GCGGCGCTATTGGC
94383330 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGAAAAATGCGCTAAAAACCAGCATTA
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGAAAAATGCGCTAAAAACCAGCATTA
94383395 GCGGCGCTATTGGC
66 GCGGCGCTATTGGC
*
94383409 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGCAAAAT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGAAAAAT
94383455 AACCCCTAAA
Statistics
Matches: 124, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
79 124 1.00
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.18
Consensus pattern (79 bp):
AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGAAAAATGCGCTAAAAACCAGCATTA
GCGGCGCTATTGGC
Found at i:94383640 original size:21 final size:21
Alignment explanation
Indices: 94383616--94383695 Score: 79
Period size: 21 Copynumber: 3.7 Consensus size: 21
94383606 ATAGTTTATG
*
94383616 GTTTATGGTTTAAGATATATA
1 GTTTAGGGTTTAAGATATATA
* *
94383637 GTTTAGGGTTTAAGATTTTTGA
1 GTTTAGGGTTTAAGATATAT-A
* * *
94383659 GTTAACATGGTTTAAGATATATG
1 GTT--TAGGGTTTAAGATATATA
94383682 GTTTAGGGTTTAAG
1 GTTTAGGGTTTAAG
94383696 GTTTATGAGT
Statistics
Matches: 46, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
21 26 0.57
22 4 0.09
23 3 0.07
24 13 0.28
ACGTcount: A:0.29, C:0.01, G:0.25, T:0.45
Consensus pattern (21 bp):
GTTTAGGGTTTAAGATATATA
Found at i:94383671 original size:45 final size:45
Alignment explanation
Indices: 94383620--94383709 Score: 153
Period size: 45 Copynumber: 2.0 Consensus size: 45
94383610 TTTATGGTTT
*
94383620 ATGGTTTAAGATATATAGTTTAGGGTTTAAGATTTTTGAGTTAAC
1 ATGGTTTAAGATATATAGTTTAGGGTTTAAGATTTATGAGTTAAC
* *
94383665 ATGGTTTAAGATATATGGTTTAGGGTTTAAGGTTTATGAGTTAAC
1 ATGGTTTAAGATATATAGTTTAGGGTTTAAGATTTATGAGTTAAC
94383710 TAGTATTTGA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.30, C:0.02, G:0.24, T:0.43
Consensus pattern (45 bp):
ATGGTTTAAGATATATAGTTTAGGGTTTAAGATTTATGAGTTAAC
Found at i:94383744 original size:18 final size:18
Alignment explanation
Indices: 94383721--94383779 Score: 70
Period size: 18 Copynumber: 3.3 Consensus size: 18
94383711 AGTATTTGAA
94383721 GGTTTATGATGAATTATG
1 GGTTTATGATGAATTATG
*
94383739 GGTTTA-GA-GTATT-TG
1 GGTTTATGATGAATTATG
94383754 AAGGTTTATGATGAATTATG
1 --GGTTTATGATGAATTATG
94383774 GGTTTA
1 GGTTTA
94383780 GGGATTATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
15 2 0.06
16 4 0.12
17 8 0.24
18 14 0.41
19 4 0.12
20 2 0.06
ACGTcount: A:0.27, C:0.00, G:0.29, T:0.44
Consensus pattern (18 bp):
GGTTTATGATGAATTATG
Found at i:94383751 original size:35 final size:35
Alignment explanation
Indices: 94383711--94383780 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
94383701 TGAGTTAACT
94383711 AGTATTTGAAGGTTTATGATGAATTATGGGTTTAG
1 AGTATTTGAAGGTTTATGATGAATTATGGGTTTAG
94383746 AGTATTTGAAGGTTTATGATGAATTATGGGTTTAG
1 AGTATTTGAAGGTTTATGATGAATTATGGGTTTAG
94383781 GGATTATAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.43
Consensus pattern (35 bp):
AGTATTTGAAGGTTTATGATGAATTATGGGTTTAG
Found at i:94383761 original size:17 final size:18
Alignment explanation
Indices: 94383711--94383764 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
94383701 TGAGTTAACT
94383711 AGTATTTGAAGGTTTATG
1 AGTATTTGAAGGTTTATG
*
94383729 ATGAATTATG--GGTTTA-G
1 A-GTATT-TGAAGGTTTATG
94383746 AGTATTTGAAGGTTTATG
1 AGTATTTGAAGGTTTATG
94383764 A
1 A
94383765 TGAATTATGG
Statistics
Matches: 29, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
15 2 0.07
16 4 0.14
17 8 0.28
18 9 0.31
19 4 0.14
20 2 0.07
ACGTcount: A:0.30, C:0.00, G:0.28, T:0.43
Consensus pattern (18 bp):
AGTATTTGAAGGTTTATG
Found at i:94383802 original size:7 final size:7
Alignment explanation
Indices: 94383790--94383864 Score: 55
Period size: 7 Copynumber: 10.7 Consensus size: 7
94383780 GGGATTATAA
94383790 TTTAGGG
1 TTTAGGG
94383797 TTTAGGG
1 TTTAGGG
*
94383804 GTTAGGG
1 TTTAGGG
94383811 -TT-GGAG
1 TTTAGG-G
*
94383817 TTTAAGG
1 TTTAGGG
*
94383824 TGTAAGGG
1 T-TTAGGG
*
94383832 TTTGGGG
1 TTTAGGG
*
94383839 TTAAGGG
1 TTTAGGG
*
94383846 TTAAGGG
1 TTTAGGG
*
94383853 TTTAGAG
1 TTTAGGG
94383860 TTTAG
1 TTTAG
94383865 AAAAATAATA
Statistics
Matches: 54, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
5 2 0.04
6 3 0.06
7 43 0.80
8 6 0.11
ACGTcount: A:0.20, C:0.00, G:0.43, T:0.37
Consensus pattern (7 bp):
TTTAGGG
Found at i:94383832 original size:21 final size:22
Alignment explanation
Indices: 94383796--94383863 Score: 72
Period size: 21 Copynumber: 3.2 Consensus size: 22
94383786 ATAATTTAGG
*
94383796 GTTTAGGGGTT-AGGG-TTGGA
1 GTTTAAGGGTTAAGGGTTTGGA
94383816 GTTTAA-GGTGTAAGGGTTTGG-
1 GTTTAAGGGT-TAAGGGTTTGGA
* *
94383837 GGTTAAGGGTTAAGGGTTTAGA
1 GTTTAAGGGTTAAGGGTTTGGA
94383859 GTTTA
1 GTTTA
94383864 GAAAAATAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
19 3 0.08
20 6 0.15
21 19 0.49
22 11 0.28
ACGTcount: A:0.21, C:0.00, G:0.43, T:0.37
Consensus pattern (22 bp):
GTTTAAGGGTTAAGGGTTTGGA
Found at i:94384342 original size:39 final size:38
Alignment explanation
Indices: 94384269--94384342 Score: 87
Period size: 39 Copynumber: 1.9 Consensus size: 38
94384259 CCTAAACCCA
* *
94384269 ATTTAATATATATATATTTATATTATTTTTAATTTAAT
1 ATTTAATATATATATATGTATATTATTTTAAATTTAAT
* *
94384307 ATTTAATATCCTATATATGTA-ATTGTATTTAAATTT
1 ATTTAATAT-ATATATATGTATATTAT-TTTAAATTT
94384343 TTAATTTATA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
38 13 0.43
39 17 0.57
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (38 bp):
ATTTAATATATATATATGTATATTATTTTAAATTTAAT
Found at i:94384381 original size:23 final size:23
Alignment explanation
Indices: 94384320--94384382 Score: 76
Period size: 23 Copynumber: 2.7 Consensus size: 23
94384310 TAATATCCTA
*
94384320 TATATGTAATTGTATTTAAATTT
1 TATATGTAATTGTATTAAAATTT
*
94384343 T-TAATTTATATT-TATTAAAATTT
1 TAT-ATGTA-ATTGTATTAAAATTT
94384366 TATATGTAATTGTATTA
1 TATATGTAATTGTATTA
94384383 GCATTTTTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
22 4 0.12
23 25 0.76
24 4 0.12
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (23 bp):
TATATGTAATTGTATTAAAATTT
Found at i:94388668 original size:43 final size:43
Alignment explanation
Indices: 94388619--94388918 Score: 582
Period size: 43 Copynumber: 7.0 Consensus size: 43
94388609 GGCATTTTTT
*
94388619 GGAAAAGTGCCGCTAAAGGTCCTGACCTTTAGCGGCGTTTGTG
1 GGAAAAGAGCCGCTAAAGGTCCTGACCTTTAGCGGCGTTTGTG
*
94388662 GGAAAAGCGCCGCTAAAGGTCCTGACCTTTAGCGGCGTTTGTG
1 GGAAAAGAGCCGCTAAAGGTCCTGACCTTTAGCGGCGTTTGTG
94388705 GGAAAAGAGCCGCTAAAGGTCCTGACCTTTAGCGGCGTTTGTG
1 GGAAAAGAGCCGCTAAAGGTCCTGACCTTTAGCGGCGTTTGTG
94388748 GGAAAAGAGCCGCTAAAGGTCCTGACCTTTAGCGGCGTTTGTG
1 GGAAAAGAGCCGCTAAAGGTCCTGACCTTTAGCGGCGTTTGTG
94388791 GGAAAAGAGCCGCTAAAGGTCCTGACCTTTAGCGGCGTTTGTG
1 GGAAAAGAGCCGCTAAAGGTCCTGACCTTTAGCGGCGTTTGTG
94388834 GGAAAAGAGCCGCTAAAGGTCCTGACCTTTAGCGGCGTTTGTG
1 GGAAAAGAGCCGCTAAAGGTCCTGACCTTTAGCGGCGTTTGTG
94388877 GGAAAAGAGCCGCTAAAGGTCCTGACCTTTAGCGGCGTTTGT
1 GGAAAAGAGCCGCTAAAGGTCCTGACCTTTAGCGGCGTTTGT
94388919 TTCAAATAAA
Statistics
Matches: 255, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
43 255 1.00
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (43 bp):
GGAAAAGAGCCGCTAAAGGTCCTGACCTTTAGCGGCGTTTGTG
Found at i:94396607 original size:32 final size:32
Alignment explanation
Indices: 94396566--94396631 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
94396556 ATTTTCTTAT
94396566 CAAAATTTTCATATGACATTCCTATTACAATG
1 CAAAATTTTCATATGACATTCCTATTACAATG
94396598 CAAAATTTTCATATGACATTCCTATTACAATG
1 CAAAATTTTCATATGACATTCCTATTACAATG
94396630 CA
1 CA
94396632 TACCATGCAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.38, C:0.20, G:0.06, T:0.36
Consensus pattern (32 bp):
CAAAATTTTCATATGACATTCCTATTACAATG
Found at i:94398447 original size:48 final size:48
Alignment explanation
Indices: 94398345--94398665 Score: 287
Period size: 48 Copynumber: 6.7 Consensus size: 48
94398335 GTGTATGTGT
* **
94398345 GCTAGT-TAAAACCATGTCTGGGACATGGCATCAACCACTT--TATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC--GGACTTGATATGAGA
* ** * *
94398392 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGTTGATATGTGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGACTTGATATGAGA
* * * * ***
94398440 GCTAGTGTAAAACCATGTCTAGGAGATGGCATC-AACCACATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGACTTGA-TATGAGA
***
94398488 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-GACCACATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGACTTGA-TATGAGA
* * *
94398536 GAC-AGTGTAAGACCATGTCTGGGACATGGCACCGG-CATTGACACGAGA
1 G-CTAGTGTAAGACCATGTCTGGGACATGGCATCGGAC-TTGATATGAGA
* * * * * *
94398584 GCTAGTGTAAGACCATATCTGGGACAAGGCATCGGCCTCGACATGTGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGACTTGATATGAGA
*
94398632 GCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCG
94398666 ACAATTTACC
Statistics
Matches: 226, Mismatches: 39, Indels: 17
0.80 0.14 0.06
Matches are distributed among these distances:
46 2 0.01
47 7 0.03
48 213 0.94
49 4 0.02
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGACTTGATATGAGA
Found at i:94398543 original size:96 final size:94
Alignment explanation
Indices: 94398338--94398664 Score: 347
Period size: 96 Copynumber: 3.4 Consensus size: 94
94398328 CAATTGGGTG
* * *
94398338 TATGTGTGCTAGT-TAAAACCATGTCTGGGACATGGCATCAACCACTTTATGAGAGCCAGTGTAA
1 TATGTGAGC-AGTGTAAAACCATGTCTGGGACATGGCATCAACCACATTATGAGAGCTAGTGTAA
*** *
94398402 GACCATGTCTGGGACATGGCATCGGTGTTGA
65 GACCATGTCTGGGACATGGCATC-GACCTCA
* * *
94398433 TATGTGTGCTAGTGTAAAACCATGTCTAGGAGATGGCATCAACCACATTATGAGAGCTAGTGTAA
1 TATGTGAGC-AGTGTAAAACCATGTCTGGGACATGGCATCAACCACATTATGAGAGCTAGTGTAA
*
94398498 GACCATGTCTGGGACATGGCATCGACCACA
65 GACCATGTCTGGGACATGGCATCGACCTCA
* * ** *
94398528 TTATGAGAGACAGTGTAAGACCATGTCTGGGACATGGCA-C--CGGCATTGACACGAGAGCTAGT
1 -TATGTGAG-CAGTGTAAAACCATGTCTGGGACATGGCATCAACCACATT---ATGAGAGCTAGT
* * *
94398590 GTAAGACCATATCTGGGACAAGGCATCGGCCTCGA
61 GTAAGACCATGTCTGGGACATGGCATCGACCTC-A
* *
94398625 CATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 TATGTGAG-CAGTGTAAAACCATGTCTGGGACATGGCATC
94398665 GACAATTTAC
Statistics
Matches: 200, Mismatches: 24, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
93 5 0.03
95 16 0.08
96 176 0.88
97 3 0.01
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (94 bp):
TATGTGAGCAGTGTAAAACCATGTCTGGGACATGGCATCAACCACATTATGAGAGCTAGTGTAAG
ACCATGTCTGGGACATGGCATCGACCTCA
Found at i:94398615 original size:144 final size:144
Alignment explanation
Indices: 94398345--94398667 Score: 425
Period size: 144 Copynumber: 2.2 Consensus size: 144
94398335 GTGTATGTGT
* * * *
94398345 GCTAGT-TAAAACCATGTCTGGGACATGGCATCAACCACTTTATGAGAGCCAGTGTAAGACCATG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGAGACAGTGTAAGACCATG
* ** * * * * * * *
94398409 TCTGGGACATGGCATCGGTGTTGATATGTGTGCTAGTGTAAAACCATGTCTAGGAGATGGCATCA
66 TCTGGGACATGGCACCGGCATTGACACGAGAGCTAGTGTAAAACCATATCTAGGACAAGGCATCA
*
94398474 ACCAC-ATTATGAGA
131 ACCACGA-CATGAGA
94398488 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGAGACAGTGTAAGACCATG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGAGACAGTGTAAGACCATG
* * *
94398553 TCTGGGACATGGCACCGGCATTGACACGAGAGCTAGTGTAAGACCATATCTGGGACAAGGCATCG
66 TCTGGGACATGGCACCGGCATTGACACGAGAGCTAGTGTAAAACCATATCTAGGACAAGGCATCA
* * *
94398618 GCCTCGACATGTGA
131 ACCACGACATGAGA
*
94398632 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGAC
94398668 AATTTACCCT
Statistics
Matches: 156, Mismatches: 22, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
143 6 0.04
144 149 0.96
145 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (144 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGAGACAGTGTAAGACCATG
TCTGGGACATGGCACCGGCATTGACACGAGAGCTAGTGTAAAACCATATCTAGGACAAGGCATCA
ACCACGACATGAGA
Found at i:94412571 original size:85 final size:85
Alignment explanation
Indices: 94412428--94412594 Score: 228
Period size: 85 Copynumber: 2.0 Consensus size: 85
94412418 ACAAGTCTAT
*
94412428 TTTGACACAAGCTCCTATTTTAGTTCAATCAGAATCAGGTCAGGAGTTTGTGGTATACAGTGATG
1 TTTGACACAAGCTCCTATTTTAGTTCAATCAGAATCAGGTCAGGAGTTTGTGGCATACAGTGATG
*
94412493 TATCACACGCCAGGTTAAGA
66 CATCACACGCCAGGTTAAGA
* * * ** *
94412513 TTTGACACAAGCTCTTGTTTTAGTTCAA-CTGAAATTGGGTCGGGAGTTTGTGGCATACAGTGAT
1 TTTGACACAAGCTCCTATTTTAGTTCAATCAG-AATCAGGTCAGGAGTTTGTGGCATACAGTGAT
* *
94412577 GCATCATATGCCAGGTTA
65 GCATCACACGCCAGGTTA
94412595 GGATGTGTTC
Statistics
Matches: 71, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
84 2 0.03
85 69 0.97
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (85 bp):
TTTGACACAAGCTCCTATTTTAGTTCAATCAGAATCAGGTCAGGAGTTTGTGGCATACAGTGATG
CATCACACGCCAGGTTAAGA
Found at i:94420816 original size:40 final size:40
Alignment explanation
Indices: 94420761--94420989 Score: 320
Period size: 40 Copynumber: 5.7 Consensus size: 40
94420751 ATGATAACGA
*
94420761 GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCG
* *
94420801 GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTTCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCG
* *
94420841 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCTG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCG
* *
94420881 GGCTAAGTCCCGAAGGCATTTGTACGAGTTACT-ATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-TCCG
* *
94420921 GGCTAAGTCTCGAAGGCATTTGTGCGAACT-ACTACA-TCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCG-AGTGACTA-ATTCCG
*
94420961 GGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGT
94420990 AGCCATATCC
Statistics
Matches: 172, Mismatches: 13, Indels: 9
0.89 0.07 0.05
Matches are distributed among these distances:
39 4 0.02
40 165 0.96
41 2 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCG
Found at i:94420894 original size:80 final size:80
Alignment explanation
Indices: 94420761--94421015 Score: 322
Period size: 80 Copynumber: 3.2 Consensus size: 80
94420751 ATGATAACGA
* * *
94420761 GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGC
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTAC
* *
94420826 TAGTGACTA-ATTTCG
66 GAGTGACTATA-TCCG
*
94420841 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCTGGGCTAAGTCCCGAAGGCATTTGTAC
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTAC
*
94420906 GAGTTACTATATCCG
66 GAGTGACTATATCCG
* **
94420921 GGCTAAGTCTCGAAGGCATTTGTGCGAACTACTACA-TCCGGGCTAAGTCCCGAAGGCATTTG-A
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGCTAAGTCCCGAAGGCATTTGTA
*
94420984 GCGAGT-AGCCATATCC-
65 -CGAGTGA-CTATATCCG
* *
94421000 GGTTAAATCCCGAAGG
1 GGCTAAGTCCCGAAGG
94421016 TACTTGGTTT
Statistics
Matches: 156, Mismatches: 15, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
79 15 0.10
80 139 0.89
81 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTAC
GAGTGACTATATCCG
Found at i:94421000 original size:40 final size:40
Alignment explanation
Indices: 94420761--94421015 Score: 263
Period size: 40 Copynumber: 6.4 Consensus size: 40
94420751 ATGATAACGA
* *
94420761 GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACCATATTCCG
* * *
94420801 GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTTCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACCATATTCCG
* *
94420841 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCTG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAG-TACCATATTCCG
* *
94420881 GGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATA-TCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAG-TACCATATTCCG
* * * *
94420921 GGCTAAGTCTCGAAGGCATTTGTGCGAACTACTACA-TCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCG-AGTACCATATTCCG
*
94420961 GGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCCATA-TCC-
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CCATATTCCG
* *
94421000 GGTTAAATCCCGAAGG
1 GGCTAAGTCCCGAAGG
94421016 TACTTGGTTT
Statistics
Matches: 194, Mismatches: 17, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
39 17 0.09
40 174 0.90
41 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTACCATATTCCG
Found at i:94423646 original size:10 final size:10
Alignment explanation
Indices: 94423615--94423657 Score: 52
Period size: 10 Copynumber: 4.3 Consensus size: 10
94423605 AAATTTATAA
94423615 TTTTA-AATT
1 TTTTATAATT
94423624 TTTTATAACTT
1 TTTTATAA-TT
94423635 TTTTATAATT
1 TTTTATAATT
**
94423645 TTAAATAATT
1 TTTTATAATT
94423655 TTT
1 TTT
94423658 AAATTTTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
9 5 0.17
10 14 0.48
11 10 0.34
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (10 bp):
TTTTATAATT
Found at i:94423662 original size:18 final size:18
Alignment explanation
Indices: 94423611--94423668 Score: 64
Period size: 18 Copynumber: 3.1 Consensus size: 18
94423601 TGAAAAATTT
**
94423611 ATAA-TTTTAAATTTTTT
1 ATAATTTTTAAATTTTAA
94423628 ATAACTTTTTTATAATTTTAA
1 ATAA--TTTTTA-AATTTTAA
94423649 ATAATTTTTAAATTTTAA
1 ATAATTTTTAAATTTTAA
94423667 AT
1 AT
94423669 TGGCTTAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
17 4 0.11
18 10 0.29
19 6 0.17
20 5 0.14
21 10 0.29
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.59
Consensus pattern (18 bp):
ATAATTTTTAAATTTTAA
Found at i:94424703 original size:16 final size:16
Alignment explanation
Indices: 94424672--94424710 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
94424662 TAATTTTATA
94424672 AAAATAATATTTTTTG
1 AAAATAATATTTTTTG
*
94424688 TAAAT-ATATATTTTTG
1 AAAATAATAT-TTTTTG
94424704 AAAATAA
1 AAAATAA
94424711 ATAAGAATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
15 4 0.21
16 14 0.74
17 1 0.05
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (16 bp):
AAAATAATATTTTTTG
Found at i:94426975 original size:35 final size:35
Alignment explanation
Indices: 94426931--94427016 Score: 154
Period size: 35 Copynumber: 2.5 Consensus size: 35
94426921 AATGATATAT
94426931 AATCTTAGATATGATACAATCTTAAATATGATTGC
1 AATCTTAGATATGATACAATCTTAAATATGATTGC
* *
94426966 AATTTTAGATATGATACAATCTTAGATATGATTGC
1 AATCTTAGATATGATACAATCTTAAATATGATTGC
94427001 AATCTTAGATATGATA
1 AATCTTAGATATGATA
94427017 TACAATTTTA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 48 1.00
ACGTcount: A:0.40, C:0.09, G:0.13, T:0.38
Consensus pattern (35 bp):
AATCTTAGATATGATACAATCTTAAATATGATTGC
Found at i:94426977 original size:18 final size:18
Alignment explanation
Indices: 94426931--94427028 Score: 128
Period size: 18 Copynumber: 5.5 Consensus size: 18
94426921 AATGATATAT
94426931 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
* *
94426948 AATCTTAAATATGATTGC
1 AATCTTAGATATGATTAC
*
94426966 AATTTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
*
94426983 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTAC
94427001 AATCTTAGATATGATATAC
1 AATCTTAGATATGAT-TAC
*
94427020 AATTTTAGA
1 AATCTTAGA
94427029 AGATATGATT
Statistics
Matches: 69, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
17 28 0.41
18 31 0.45
19 10 0.14
ACGTcount: A:0.40, C:0.09, G:0.12, T:0.39
Consensus pattern (18 bp):
AATCTTAGATATGATTAC
Found at i:94427202 original size:44 final size:44
Alignment explanation
Indices: 94427151--94427344 Score: 162
Period size: 44 Copynumber: 4.4 Consensus size: 44
94427141 GGGACAATGT
*
94427151 AGATCAAAGA-AACAAGATTTGGCATCCCTATGTTTATAGGGAAC
1 AGATCAAAGATAAC-AGATTTGGCATCCCTGTGTTTATAGGGAAC
** * * * * * *
94427195 AGATCAAAGATAGTAGATCTGACATTCCTGTGCTTACAGCGAAGC
1 AGATCAAAGATAACAGATTTGGCATCCCTGTGTTTATAGGGAA-C
** ** *
94427240 AGATTGAAGATTTCA-ATATGGCATCCCTGTGTTTATAGGGAAC
1 AGATCAAAGATAACAGATTTGGCATCCCTGTGTTTATAGGGAAC
** *
94427283 A-AGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAAC
1 AGA-TCAAAGATAACAGATTTGGCATCCCTGTGTTTATAGGGAAC
*
94427327 AGATCGAAA-ATAGCAGAT
1 AGATC-AAAGATAACAGAT
94427345 CTAACCTTTA
Statistics
Matches: 119, Mismatches: 25, Indels: 12
0.76 0.16 0.08
Matches are distributed among these distances:
42 1 0.01
43 12 0.10
44 91 0.76
45 15 0.13
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (44 bp):
AGATCAAAGATAACAGATTTGGCATCCCTGTGTTTATAGGGAAC
Found at i:94427547 original size:119 final size:119
Alignment explanation
Indices: 94427336--94427812 Score: 783
Period size: 119 Copynumber: 4.0 Consensus size: 119
94427326 CAGATCGAAA
*
94427336 ATAGCAGATCTAACCTTTAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* * *
94427401 TTACAAGGAACAAAGCGAGGACATAGTAGATTTGACTCTCAGACGTTCTCAAAG
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
*
94427455 ATAGCAAATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
*
94427520 TTACAAGGAACAAATCGAGGACATAGTAGATTTGACTCTCAGACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* * * *
94427574 ATAACAGATCTAACCTTTAGATGTTTTTACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
*
94427639 TTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* * * *
94427693 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAAATCCAAGATGGTTTGGCATCCTTGTGC
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* * * *
94427758 TTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
94427812 A
1 A
94427813 GACTCAAGAT
Statistics
Matches: 334, Mismatches: 24, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
119 334 1.00
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.30
Consensus pattern (119 bp):
ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
Found at i:94427965 original size:84 final size:83
Alignment explanation
Indices: 94427734--94428003 Score: 459
Period size: 83 Copynumber: 3.2 Consensus size: 83
94427724 GAAGCAAATC
*
94427734 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCAGATATGACTCTCA
*
94427799 AATGTTCTCAAATAGACT
66 AATGTTCTCAAACAGACT
94427817 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCAGATATGACTCTCA
94427882 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* * * *
94427900 TAAGATGGTTTAGGCAACCTTGTGCTTACAAGGAACAAGTCGAGGACCTTGCAGATATGATTCTC
1 CAAGATGGTTT-GGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCAGATATGACTCTC
94427965 AAATGTTCTCAAACAGACT
65 AAATGTTCTCAAACAGACT
* *
94427984 CAAGATGATTTGACATCCTT
1 CAAGATGGTTTGGCATCCTT
94428004 ACAAATCGAA
Statistics
Matches: 176, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
83 98 0.56
84 78 0.44
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (83 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCAGATATGACTCTCA
AATGTTCTCAAACAGACT
Found at i:94428436 original size:18 final size:18
Alignment explanation
Indices: 94428397--94428494 Score: 146
Period size: 18 Copynumber: 5.5 Consensus size: 18
94428387 AATGATATGT
94428397 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
* *
94428414 AATCTTAAATATGATTGC
1 AATCTTAGATATGATTAC
94428432 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
*
94428449 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTAC
94428467 AATCTTAGATATGATATAC
1 AATCTTAGATATGAT-TAC
94428486 AATCTTAGA
1 AATCTTAGA
94428495 AGATATGATT
Statistics
Matches: 72, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
17 29 0.40
18 32 0.44
19 11 0.15
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.37
Consensus pattern (18 bp):
AATCTTAGATATGATTAC
Found at i:94428437 original size:35 final size:35
Alignment explanation
Indices: 94428388--94428492 Score: 165
Period size: 35 Copynumber: 2.9 Consensus size: 35
94428378 ATAATCTTCA
*
94428388 ATGATATGTAATCTTAGATATGATACAATCTTAAAT
1 ATGAT-TGCAATCTTAGATATGATACAATCTTAAAT
*
94428424 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAAAT
94428459 ATGATTGCAATCTTAGATATGATATACAATCTTA
1 ATGATTGCAATCTTAGATATG--ATACAATCTTA
94428493 GAAGATATGA
Statistics
Matches: 65, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
35 49 0.75
36 5 0.08
37 11 0.17
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.38
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAAAT
Found at i:94429020 original size:15 final size:16
Alignment explanation
Indices: 94428977--94429035 Score: 50
Period size: 16 Copynumber: 3.5 Consensus size: 16
94428967 CAATATATTT
*
94428977 TATATATTTTATATAA
1 TATATTTTTTATATAA
94428993 T-TATTATTCTTATA-AA
1 TATATT-TT-TTATATAA
94429009 TATATTTTTTATTATATA
1 TATATTTTTTA-TATA-A
94429027 TTATATTTT
1 -TATATTTT
94429036 AAATTTATTA
Statistics
Matches: 35, Mismatches: 1, Indels: 11
0.74 0.02 0.23
Matches are distributed among these distances:
15 6 0.17
16 10 0.29
17 10 0.29
18 1 0.03
19 8 0.23
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.63
Consensus pattern (16 bp):
TATATTTTTTATATAA
Found at i:94429039 original size:30 final size:29
Alignment explanation
Indices: 94428970--94429044 Score: 75
Period size: 30 Copynumber: 2.6 Consensus size: 29
94428960 TCTAAACCAA
94428970 TATATTTT--ATATATTTTATATAATTAT
1 TATATTTTAAATATATTTTATATAATTAT
* *
94428997 TAT-TCTTATAAATATATTTTTTATTATATAT
1 TATAT-TT-TAAATATATTTTATATAAT-TAT
*
94429028 TATATTTTAAATTTATT
1 TATATTTTAAATATATT
94429045 ATTAAATATC
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
26 1 0.03
27 5 0.13
28 1 0.03
30 23 0.59
31 8 0.21
32 1 0.03
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.63
Consensus pattern (29 bp):
TATATTTTAAATATATTTTATATAATTAT
Found at i:94429060 original size:26 final size:26
Alignment explanation
Indices: 94429012--94429061 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
94429002 TTATAAATAT
* * * *
94429012 ATTTTTTATTATATATTATATTTTAA
1 ATTTATTATTAAATATCACATTTTAA
94429038 ATTTATTATTAAATATCACATTTT
1 ATTTATTATTAAATATCACATTTT
94429062 TTTATATGCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (26 bp):
ATTTATTATTAAATATCACATTTTAA
Found at i:94431571 original size:52 final size:52
Alignment explanation
Indices: 94431509--94431612 Score: 208
Period size: 52 Copynumber: 2.0 Consensus size: 52
94431499 ACATTTCTCT
94431509 TTCATAGAAAGATGGTCGATGGTAAGAGTGTTGGAAGAAAAGTGATTGACAG
1 TTCATAGAAAGATGGTCGATGGTAAGAGTGTTGGAAGAAAAGTGATTGACAG
94431561 TTCATAGAAAGATGGTCGATGGTAAGAGTGTTGGAAGAAAAGTGATTGACAG
1 TTCATAGAAAGATGGTCGATGGTAAGAGTGTTGGAAGAAAAGTGATTGACAG
94431613 AATACATGGA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.37, C:0.06, G:0.33, T:0.25
Consensus pattern (52 bp):
TTCATAGAAAGATGGTCGATGGTAAGAGTGTTGGAAGAAAAGTGATTGACAG
Found at i:94432117 original size:46 final size:46
Alignment explanation
Indices: 94432066--94432156 Score: 164
Period size: 46 Copynumber: 2.0 Consensus size: 46
94432056 GCTCAAATTT
*
94432066 GGGATGGTAGTAGATCATTTATGGACCATGAAGGTACAAGCTGATC
1 GGGATGGTAGTAGATCATTTACGGACCATGAAGGTACAAGCTGATC
*
94432112 GGGATGGTAGTAGATCATTTACGGACCATGAAGGTACAAGTTGAT
1 GGGATGGTAGTAGATCATTTACGGACCATGAAGGTACAAGCTGAT
94432157 ACATTGAGCA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.31, C:0.12, G:0.31, T:0.26
Consensus pattern (46 bp):
GGGATGGTAGTAGATCATTTACGGACCATGAAGGTACAAGCTGATC
Found at i:94432415 original size:2 final size:2
Alignment explanation
Indices: 94432410--94432434 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
94432400 AGAAAGAAAA
94432410 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
94432435 ACAGTGTCAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:94434944 original size:6 final size:6
Alignment explanation
Indices: 94434933--94434988 Score: 53
Period size: 6 Copynumber: 9.0 Consensus size: 6
94434923 CTTCTATTTT
*
94434933 AAAAGA AAAAG- AAAA-A AAAAGA AAAAGA GAAAAAA TAAAGAGAA AAAAGA
1 AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA -AAAAGA -AAA-AG-A AAAAGA
94434983 AAAAGA
1 AAAAGA
94434989 TGGAGAGGCC
Statistics
Matches: 42, Mismatches: 3, Indels: 10
0.76 0.05 0.18
Matches are distributed among these distances:
5 8 0.19
6 19 0.45
7 10 0.24
8 4 0.10
9 1 0.02
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (6 bp):
AAAAGA
Found at i:94434954 original size:16 final size:16
Alignment explanation
Indices: 94434933--94434980 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 16
94434923 CTTCTATTTT
94434933 AAAAGAAAAAGAAAAA
1 AAAAGAAAAAGAAAAA
*
94434949 AAAAGAAAAAG-AGAA
1 AAAAGAAAAAGAAAAA
* *
94434964 AAAATAAAGAGAAAAA
1 AAAAGAAAAAGAAAAA
94434980 A
1 A
94434981 GAAAAAGATG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
15 12 0.44
16 15 0.56
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (16 bp):
AAAAGAAAAAGAAAAA
Found at i:94434965 original size:13 final size:12
Alignment explanation
Indices: 94434933--94434988 Score: 53
Period size: 11 Copynumber: 4.5 Consensus size: 12
94434923 CTTCTATTTT
94434933 AAAAGAAAAAG-
1 AAAAGAAAAAGA
94434944 AAAA-AAAAAGA
1 AAAAGAAAAAGA
*
94434955 AAAAGAGAAAAAA
1 AAAAGA-AAAAGA
94434968 TAAAGAGAAAAAAGA
1 -AAA-AG-AAAAAGA
94434983 AAAAGA
1 AAAAGA
94434989 TGGAGAGGCC
Statistics
Matches: 37, Mismatches: 2, Indels: 11
0.74 0.04 0.22
Matches are distributed among these distances:
10 6 0.16
11 8 0.22
12 2 0.05
13 7 0.19
14 6 0.16
15 7 0.19
16 1 0.03
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (12 bp):
AAAAGAAAAAGA
Found at i:94434995 original size:21 final size:21
Alignment explanation
Indices: 94434933--94434986 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
94434923 CTTCTATTTT
* * *
94434933 AAAAGAAAAAGAAAAAAAAAGA
1 AAAAGAGAAA-AAATAAAGAGA
94434955 AAAAGAGAAAAAATAAAGAGA
1 AAAAGAGAAAAAATAAAGAGA
94434976 AAAA-AGAAAAA
1 AAAAGAGAAAAA
94434987 GATGGAGAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 7 0.24
21 13 0.45
22 9 0.31
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (21 bp):
AAAAGAGAAAAAATAAAGAGA
Found at i:94436095 original size:132 final size:132
Alignment explanation
Indices: 94435857--94436178 Score: 513
Period size: 132 Copynumber: 2.4 Consensus size: 132
94435847 ATGTAGATCA
* *
94435857 AAGAAATAAGATTTAGCATCCCTATGTTTATAGGGAACAGATCAAAGATAGTAGATCTGACATTC
1 AAGAAACAAGATTTGGCATCCCTATGTTTATAGGGAACAGATCAAAGATAGTAGATCTGACATTC
* * *
94435922 CTGTGCTTACAGCGAAGTAGATTGAAGATTTCAGCACGGCATCCCTGTGTTTATAGGGAACAAGT
66 CTGTGCTTACAGCGAAGCAGATTGAAGATTTCAACACGGCATCCCTGTGTTTACAGGGAACAAGT
94435987 TG
131 TG
94435989 AAGAAACAAGATTTGGCATCCCTATGTTTATAGGGAACAGATCAAAGATAGTAGATCTGACATTC
1 AAGAAACAAGATTTGGCATCCCTATGTTTATAGGGAACAGATCAAAGATAGTAGATCTGACATTC
* * *
94436054 CTGTGCTTACAGTGAAGCAGATTGAAGATTTCAATATGGCATCCCTGTGTTTACAGGGAACAAGT
66 CTGTGCTTACAGCGAAGCAGATTGAAGATTTCAACACGGCATCCCTGTGTTTACAGGGAACAAGT
94436119 TG
131 TG
* * *
94436121 AAGATAGC-AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAA-ATAGCAGATCT
1 AAGA-AACAAGATTTGGCATCCCTATGTTTATAGGGAACAGATC-AAAGATAGTAGATCT
94436179 AACCTTTAGA
Statistics
Matches: 177, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
132 172 0.97
133 5 0.03
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.28
Consensus pattern (132 bp):
AAGAAACAAGATTTGGCATCCCTATGTTTATAGGGAACAGATCAAAGATAGTAGATCTGACATTC
CTGTGCTTACAGCGAAGCAGATTGAAGATTTCAACACGGCATCCCTGTGTTTACAGGGAACAAGT
TG
Found at i:94436172 original size:44 final size:44
Alignment explanation
Indices: 94435865--94436176 Score: 201
Period size: 44 Copynumber: 7.1 Consensus size: 44
94435855 CAAAGAAATA
* * * *
94435865 AGATTTAGCATCCCTATGTTTATAGGGAACAGA-TCAAAGATAGT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATTGAAA-ATAGC
* * * * * * * * **
94435909 AGATCTGACATTCCTGTGCTTACAGCGAAGTAGATTGAAGATTTC
1 AGATTTGGCATCCCTGTGTTTATAGGGAA-CAGATTGAAAATAGC
*
94435954 AGCA--CGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGAA-A-C
1 AG-ATTTGGCATCCCTGTGTTTATAGGGAACAGA-TTGAA-AATAGC
* * *
94435996 AAGATTTGGCATCCCTATGTTTATAGGGAACAGA-TCAAAGATAGT
1 -AGATTTGGCATCCCTGTGTTTATAGGGAACAGATTGAAA-ATAGC
* * * * * * * **
94436041 AGATCTGACATTCCTGTGCTTACAGTGAAGCAGATTGAAGATTTC
1 AGATTTGGCATCCCTGTGTTTATAGGGAA-CAGATTGAAAATAGC
* * *
94436086 A-ATATGGCATCCCTGTGTTTACAGGGAACA-AGTTGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGA-TTGAAAATAGC
*
94436129 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAAATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATTGAAAATAGC
94436173 AGAT
1 AGAT
94436177 CTAACCTTTA
Statistics
Matches: 201, Mismatches: 50, Indels: 34
0.71 0.18 0.12
Matches are distributed among these distances:
42 5 0.02
43 24 0.12
44 149 0.74
45 16 0.08
46 7 0.03
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (44 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAGATTGAAAATAGC
Found at i:94436379 original size:59 final size:59
Alignment explanation
Indices: 94436282--94436401 Score: 204
Period size: 59 Copynumber: 2.0 Consensus size: 59
94436272 CAGATGTTCT
* * * *
94436282 CAAATATAGCAGATCTAACCTTTAGATGTTTATACTGAAGCAGATCCAAGATGATTTGG
1 CAAAGATAGCAAATCTAACCTTCAGATGCTTATACTGAAGCAGATCCAAGATGATTTGG
94436341 CAAAGATAGCAAATCTAACCTTCAGATGCTTATACTGAAGCAGATCCAAGATGATTTGG
1 CAAAGATAGCAAATCTAACCTTCAGATGCTTATACTGAAGCAGATCCAAGATGATTTGG
94436400 CA
1 CA
94436402 TTCTTGTGTT
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
59 57 1.00
ACGTcount: A:0.37, C:0.17, G:0.18, T:0.28
Consensus pattern (59 bp):
CAAAGATAGCAAATCTAACCTTCAGATGCTTATACTGAAGCAGATCCAAGATGATTTGG
Found at i:94436475 original size:178 final size:178
Alignment explanation
Indices: 94436168--94436518 Score: 630
Period size: 178 Copynumber: 2.0 Consensus size: 178
94436158 CAGATCGAAA
* * *
94436168 ATAGCAGATCTAACCTTTAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
1 ATAGCAAATCTAACCTTCAGATGCTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
*
94436233 TTACAAGGAACAAATCGAGGACATAGTAGATTTGACTCTCAGATGTTCTCAAATATAGCAGATCT
66 TTACAAGGAACAAATCGAAGACATAGTAGATTTGACTCTCAGATGTTCTCAAATATAGCAGATCT
*
94436298 AACCTTTAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCAAAG
131 AACCTTTAGATGTTTATACTAAAGCAGATCCAAGATGATTTGGCAAAG
94436346 ATAGCAAATCTAACCTTCAGATGCTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
1 ATAGCAAATCTAACCTTCAGATGCTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* * *
94436411 TTACAAGGAGCAAATCGAAGACATAGTAGGTTTGACTCTCAGATGTTCTCAAATATATCAGATCT
66 TTACAAGGAACAAATCGAAGACATAGTAGATTTGACTCTCAGATGTTCTCAAATATAGCAGATCT
94436476 AACCTTTAGATGTTTATACTAAAGCAGATCCAAGATGATTTGG
131 AACCTTTAGATGTTTATACTAAAGCAGATCCAAGATGATTTGG
94436519 TATTCTTGTG
Statistics
Matches: 165, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
178 165 1.00
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (178 bp):
ATAGCAAATCTAACCTTCAGATGCTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
TTACAAGGAACAAATCGAAGACATAGTAGATTTGACTCTCAGATGTTCTCAAATATAGCAGATCT
AACCTTTAGATGTTTATACTAAAGCAGATCCAAGATGATTTGGCAAAG
Found at i:94436564 original size:119 final size:119
Alignment explanation
Indices: 94436341--94437179 Score: 1408
Period size: 119 Copynumber: 7.1 Consensus size: 119
94436331 GATGATTTGG
* * * *
94436341 CAAAGATAGCAAATCTAACCTTCAGATGCTTATACTGAAGCAGATCCAAGATGATTTGGCATTCT
1 CAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCT
* * * * *
94436406 TGTGTTTACAAGGAGCAAATCGAAGACATAGTAGGTTTGACTCTCAGATGTTCT
66 TGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCT
* * *
94436460 CAAATATATCAGATCTAACCTTTAGATGTTTATACTAAAGCAGATCCAAGATGATTTGGTATTCT
1 CAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCT
94436525 TGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCT
66 TGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCT
*
94436579 CAAATATAACAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCT
1 CAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCT
94436644 TGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCT
66 TGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCT
* *
94436698 CAAAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCT
1 CAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCT
94436763 TGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCT
66 TGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCT
*
94436817 CAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGATATTCT
1 CAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCT
*
94436882 TGTGTTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCT
66 TGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCT
* * *
94436936 CAAATATAACAGATCTAACCTTTAGATGTTTTTACTGAAGCAGATCCAAGATGATTTGGTATTCT
1 CAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCT
*
94437001 TGTGTTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCT
66 TGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCT
* * * *
94437055 CAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATCCT
1 CAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCT
* * * * *
94437120 TGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCT
66 TGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCT
94437174 CAAATA
1 CAAATA
94437180 GACTCAAGAT
Statistics
Matches: 681, Mismatches: 39, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
119 681 1.00
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.30
Consensus pattern (119 bp):
CAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCT
TGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCT
Found at i:94437206 original size:83 final size:83
Alignment explanation
Indices: 94437101--94437355 Score: 510
Period size: 83 Copynumber: 3.1 Consensus size: 83
94437091 GAAGTAGATC
94437101 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
94437166 AATGTTCTCAAATAGACT
66 AATGTTCTCAAATAGACT
94437184 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
94437249 AATGTTCTCAAATAGACT
66 AATGTTCTCAAATAGACT
94437267 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
94437332 AATGTTCTCAAATAGACT
66 AATGTTCTCAAATAGACT
94437350 CAAGAT
1 CAAGAT
94437356 CTTGCAGACA
Statistics
Matches: 172, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
83 172 1.00
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.27
Consensus pattern (83 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
AATGTTCTCAAATAGACT
Found at i:94437362 original size:43 final size:43
Alignment explanation
Indices: 94437314--94437398 Score: 143
Period size: 43 Copynumber: 2.0 Consensus size: 43
94437304 ATCGAGGACA
* *
94437314 TTGCAGATATGACTCTCAAATGTTCTCAAATAGACTCAAGATC
1 TTGCAGACATGACTCTCAAATGTTCTCAAACAGACTCAAGATC
*
94437357 TTGCAGACATGACTCTCAAATGTTCTCAAACAGACTTAAGAT
1 TTGCAGACATGACTCTCAAATGTTCTCAAACAGACTCAAGAT
94437399 GGTTTAGGCA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.29
Consensus pattern (43 bp):
TTGCAGACATGACTCTCAAATGTTCTCAAACAGACTCAAGATC
Found at i:94437458 original size:127 final size:126
Alignment explanation
Indices: 94437231--94437482 Score: 423
Period size: 127 Copynumber: 2.0 Consensus size: 126
94437221 ATCGAGGACA
* * *
94437231 TTGCAGATATGACTCTCAAATGTTCTCAAATAGACTCAAGATGGTTTGGCATCCTTGTGCTTACA
1 TTGCAGACATGACTCTCAAATGTTCTCAAACAGACTCAAGATGGTTTGGCAACCTTGTGCTTACA
*
94437296 AGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAATAGACTCAAGATC
66 AGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAACAGACTCAAGATC
*
94437357 TTGCAGACATGACTCTCAAATGTTCTCAAACAGACTTAAGATGGTTTAGGCAACCTTGTGCTTAC
1 TTGCAGACATGACTCTCAAATGTTCTCAAACAGACTCAAGATGGTTT-GGCAACCTTGTGCTTAC
* * *
94437422 AAGGAACAAGTCGAGGACCTTGCAGATATGATTCTCAAATGTTCTCAAACAGACTCAAGAT
65 AAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAACAGACTCAAGAT
94437483 GATTTGACAT
Statistics
Matches: 117, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
126 44 0.38
127 73 0.62
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (126 bp):
TTGCAGACATGACTCTCAAATGTTCTCAAACAGACTCAAGATGGTTTGGCAACCTTGTGCTTACA
AGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAACAGACTCAAGATC
Found at i:94437928 original size:18 final size:18
Alignment explanation
Indices: 94437889--94437973 Score: 129
Period size: 18 Copynumber: 4.8 Consensus size: 18
94437879 AATGATATGT
94437889 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
* *
94437906 AATCTTAAATATGATTGC
1 AATCTTAGATATGATTAC
94437924 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
*
94437941 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTAC
94437959 AATCTTAGATATGAT
1 AATCTTAGATATGAT
94437974 ANNNNNNNNN
Statistics
Matches: 61, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
17 29 0.48
18 32 0.52
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.38
Consensus pattern (18 bp):
AATCTTAGATATGATTAC
Found at i:94437929 original size:35 final size:35
Alignment explanation
Indices: 94437880--94437974 Score: 163
Period size: 35 Copynumber: 2.7 Consensus size: 35
94437870 ATAATCTTCA
*
94437880 ATGATATGTAATCTTAGATATGATACAATCTTAAAT
1 ATGAT-TGCAATCTTAGATATGATACAATCTTAAAT
*
94437916 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAAAT
94437951 ATGATTGCAATCTTAGATATGATA
1 ATGATTGCAATCTTAGATATGATA
94437975 NNNNNNNNNN
Statistics
Matches: 57, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
35 52 0.91
36 5 0.09
ACGTcount: A:0.39, C:0.09, G:0.14, T:0.38
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAAAT
Found at i:94440002 original size:15 final size:15
Alignment explanation
Indices: 94439969--94440010 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
94439959 TAAATGAGTT
* *
94439969 GTAGAAGAAGAAAAA
1 GTAGAAAAAAAAAAA
94439984 -TAGAAAAAAAAAAA
1 GTAGAAAAAAAAAAA
94439998 GTAGAAAAAAAAA
1 GTAGAAAAAAAAA
94440011 CCAGCAATTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 12 0.50
15 12 0.50
ACGTcount: A:0.76, C:0.00, G:0.17, T:0.07
Consensus pattern (15 bp):
GTAGAAAAAAAAAAA
Found at i:94442791 original size:28 final size:28
Alignment explanation
Indices: 94442751--94442820 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
94442741 ATAGTAAGTC
*
94442751 CGCACACTTAGTGCT-TAATAATCAAACT
1 CGCACACTTAGTGCTAT-ACAATCAAACT
*
94442779 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
94442807 CGCACACTTAGTGC
1 CGCACACTTAGTGC
94442821 CAATCTCATA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 38 0.97
29 1 0.03
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:94443380 original size:101 final size:101
Alignment explanation
Indices: 94443204--94444095 Score: 1757
Period size: 101 Copynumber: 8.8 Consensus size: 101
94443194 CTTCTTAAAC
* *
94443204 ATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAATATAATAAACAATTCAAGTCA
1 ATAATATATTAACATATATT-AAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCA
94443269 TTAATCCATGCATATTGGTCGGCTACTTTTATCTTTT
65 TTAATCCATGCATATTGGTCGGCTACTTTTATCTTTT
94443306 ATAATATATTAACATATATTAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCAT
1 ATAATATATTAACATATATTAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCAT
94443371 TAATCCATGCATATTGGTCGGCTACTTTTATCTTTT
66 TAATCCATGCATATTGGTCGGCTACTTTTATCTTTT
94443407 ATAATATATTAACATATATTAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCAT
1 ATAATATATTAACATATATTAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCAT
94443472 TAATCCATGCATATTGGTCGGCTACTTTTATCTTTT
66 TAATCCATGCATATTGGTCGGCTACTTTTATCTTTT
94443508 ATAATATATTAACATATATTAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCAT
1 ATAATATATTAACATATATTAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCAT
94443573 TAATCCATGCATATTGGTCGGCTACTTTTATCTTTT
66 TAATCCATGCATATTGGTCGGCTACTTTTATCTTTT
94443609 ATAATATATTAACATATATTAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCAT
1 ATAATATATTAACATATATTAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCAT
94443674 TAATCCATGCATATTGGTCGGCTACTTTTATCTTTT
66 TAATCCATGCATATTGGTCGGCTACTTTTATCTTTT
94443710 ATAATATATTAACATATATTAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCAT
1 ATAATATATTAACATATATTAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCAT
94443775 TAATCCATGCATATTGGTCGGCTACTTTTATCTTTT
66 TAATCCATGCATATTGGTCGGCTACTTTTATCTTTT
94443811 ATAATATATTAACATATATTAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCAT
1 ATAATATATTAACATATATTAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCAT
94443876 TAATCCATGCATATTGGTCGGCTACTTTTATCTTTT
66 TAATCCATGCATATTGGTCGGCTACTTTTATCTTTT
94443912 ATAATATATTAACATATATTAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCAT
1 ATAATATATTAACATATATTAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCAT
94443977 TAATCCATGCATATTGGTCGGCTACTTTTATCTTTT
66 TAATCCATGCATATTGGTCGGCTACTTTTATCTTTT
94444013 ATAATATATTAACATATATTAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCAT
1 ATAATATATTAACATATATTAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCAT
94444078 TAATCCATGCATATTGGT
66 TAATCCATGCATATTGGT
94444096 TGGCCGTTAA
Statistics
Matches: 788, Mismatches: 2, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
101 768 0.97
102 20 0.03
ACGTcount: A:0.40, C:0.15, G:0.08, T:0.37
Consensus pattern (101 bp):
ATAATATATTAACATATATTAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCAT
TAATCCATGCATATTGGTCGGCTACTTTTATCTTTT
Found at i:94447760 original size:101 final size:108
Alignment explanation
Indices: 94447638--94448340 Score: 1133
Period size: 101 Copynumber: 6.7 Consensus size: 108
94447628 TATTCCCCAA
* *
94447638 ATATTAAAGTATACCATAATGCCATAAAATATAATAAACAATTCAAGTCATTAATCCATGCATAT
1 ATATTAAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCATTAATCCATGCATAT
94447703 TGGTCGGCTACTTTCATCTTTTA-T-AATAT-AT-TA-AA-AT
66 TGGTCGGCTACTTTCATCTTTTATTAAATATAATATATAACAT
*
94447740 ATATT-AAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCATTAATCCATTCATAT
1 ATATTAAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCATTAATCCATGCATAT
*
94447804 TGGTTGGCTACTTTCATCTTTTATTAAATATAATATATTAACAT
66 TGGTCGGCTACTTTCATCTTTTATTAAATATAATATA-TAACAT
*
94447848 ATATTAAAGTATACCATAATGCCATTAAACATAATAAATAATTCAAGTCATTAATCCATGCATAT
1 ATATTAAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCATTAATCCATGCATAT
94447913 TGGTCGGCTACTTTCATCTTTTA-T-AATAT-AT-TA-AA-AT
66 TGGTCGGCTACTTTCATCTTTTATTAAATATAATATATAACAT
*
94447950 ATATT-AAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCATTAATCCATTCATAT
1 ATATTAAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCATTAATCCATGCATAT
*
94448014 TGGTTGGCTACTTTCATCTTTTATTAAATATAATATATTAACAT
66 TGGTCGGCTACTTTCATCTTTTATTAAATATAATATA-TAACAT
*
94448058 ATATTAAAGTATACCATAATGCCATTAAACATAATAAATAATTCAAGTCATTAATCCATGCATAT
1 ATATTAAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCATTAATCCATGCATAT
94448123 TGGTCGGCTACTTTCATCTTTTA-T-AATAT-AT-TA-AA-AT
66 TGGTCGGCTACTTTCATCTTTTATTAAATATAATATATAACAT
*
94448160 ATATT-AAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCATTAATCCATTCATAT
1 ATATTAAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCATTAATCCATGCATAT
*
94448224 TGGTTGGCTACTTTCATCTTTTATTAAATATAATATATTAACAT
66 TGGTCGGCTACTTTCATCTTTTATTAAATATAATATA-TAACAT
*
94448268 ATATTAAAGTATACCATAATGCCATTAAACATAATAAATAATTCAAGTCATTAATCCATGCATAT
1 ATATTAAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCATTAATCCATGCATAT
94448333 TGGTCGGC
66 TGGTCGGC
94448341 CGTTAATTCC
Statistics
Matches: 558, Mismatches: 19, Indels: 41
0.90 0.03 0.07
Matches are distributed among these distances:
101 236 0.42
102 22 0.04
103 19 0.03
104 6 0.01
105 10 0.02
106 4 0.01
107 16 0.03
108 23 0.04
109 222 0.40
ACGTcount: A:0.41, C:0.15, G:0.08, T:0.37
Consensus pattern (108 bp):
ATATTAAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCATTAATCCATGCATAT
TGGTCGGCTACTTTCATCTTTTATTAAATATAATATATAACAT
Found at i:94448000 original size:210 final size:210
Alignment explanation
Indices: 94447638--94448340 Score: 1379
Period size: 210 Copynumber: 3.3 Consensus size: 210
94447628 TATTCCCCAA
* * *
94447638 ATATTAAAGTATACCATAATGCCATAAAATATAATAAACAATTCAAGTCATTAATCCATGCATAT
1 ATATTAAAGTATACCATAATGCCATTAAACATAATAAATAATTCAAGTCATTAATCCATGCATAT
94447703 TGGTCGGCTACTTTCATCTTTTATAATATATTAAAATATATTAAGTATACCATAATGCCATAAAA
66 TGGTCGGCTACTTTCATCTTTTATAATATATTAAAATATATTAAGTATACCATAATGCCATAAAA
94447768 CATAATAAATAATTCAAGTCATTAATCCATTCATATTGGTTGGCTACTTTCATCTTTTATTAAAT
131 CATAATAAATAATTCAAGTCATTAATCCATTCATATTGGTTGGCTACTTTCATCTTTTATTAAAT
94447833 ATAATATATTAACAT
196 ATAATATATTAACAT
94447848 ATATTAAAGTATACCATAATGCCATTAAACATAATAAATAATTCAAGTCATTAATCCATGCATAT
1 ATATTAAAGTATACCATAATGCCATTAAACATAATAAATAATTCAAGTCATTAATCCATGCATAT
94447913 TGGTCGGCTACTTTCATCTTTTATAATATATTAAAATATATTAAGTATACCATAATGCCATAAAA
66 TGGTCGGCTACTTTCATCTTTTATAATATATTAAAATATATTAAGTATACCATAATGCCATAAAA
94447978 CATAATAAATAATTCAAGTCATTAATCCATTCATATTGGTTGGCTACTTTCATCTTTTATTAAAT
131 CATAATAAATAATTCAAGTCATTAATCCATTCATATTGGTTGGCTACTTTCATCTTTTATTAAAT
94448043 ATAATATATTAACAT
196 ATAATATATTAACAT
94448058 ATATTAAAGTATACCATAATGCCATTAAACATAATAAATAATTCAAGTCATTAATCCATGCATAT
1 ATATTAAAGTATACCATAATGCCATTAAACATAATAAATAATTCAAGTCATTAATCCATGCATAT
94448123 TGGTCGGCTACTTTCATCTTTTATAATATATTAAAATATATTAAGTATACCATAATGCCATAAAA
66 TGGTCGGCTACTTTCATCTTTTATAATATATTAAAATATATTAAGTATACCATAATGCCATAAAA
94448188 CATAATAAATAATTCAAGTCATTAATCCATTCATATTGGTTGGCTACTTTCATCTTTTATTAAAT
131 CATAATAAATAATTCAAGTCATTAATCCATTCATATTGGTTGGCTACTTTCATCTTTTATTAAAT
94448253 ATAATATATTAACAT
196 ATAATATATTAACAT
94448268 ATATTAAAGTATACCATAATGCCATTAAACATAATAAATAATTCAAGTCATTAATCCATGCATAT
1 ATATTAAAGTATACCATAATGCCATTAAACATAATAAATAATTCAAGTCATTAATCCATGCATAT
94448333 TGGTCGGC
66 TGGTCGGC
94448341 CGTTAATTCC
Statistics
Matches: 490, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
210 490 1.00
ACGTcount: A:0.41, C:0.15, G:0.08, T:0.37
Consensus pattern (210 bp):
ATATTAAAGTATACCATAATGCCATTAAACATAATAAATAATTCAAGTCATTAATCCATGCATAT
TGGTCGGCTACTTTCATCTTTTATAATATATTAAAATATATTAAGTATACCATAATGCCATAAAA
CATAATAAATAATTCAAGTCATTAATCCATTCATATTGGTTGGCTACTTTCATCTTTTATTAAAT
ATAATATATTAACAT
Found at i:94450504 original size:30 final size:30
Alignment explanation
Indices: 94450470--94450527 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
94450460 TTTTCGAGCA
* *
94450470 TAGGGGTAAAATGGTCATTTTGCCAAAGTC
1 TAGGGGCAAAATGGTCATTTTACCAAAGTC
94450500 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGCAAAATGGTCATTTTACCAAAG
94450528 ATGTGAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTC
Found at i:94450991 original size:95 final size:91
Alignment explanation
Indices: 94450868--94451082 Score: 243
Period size: 95 Copynumber: 2.3 Consensus size: 91
94450858 TTACTTGTAT
* *
94450868 GCCAGTGTAAGACATGTCTGAGACATGCACCGGCCAC-AATATGATAGCCAGTGAAAGACCATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCACCGGCCACGAAGATGATAGCCAGTGAAAGA-CATGT
* *
94450932 CTGGGATATGGCATCGGCGTAGAGAATAAGC
65 CTGGGACA-CGCATCGGC-TA-AG-ATAAGC
** * * * *
94450963 GCCAGTGTAAGACATGTCTGGGACATGCATTGGCCTCGACGATGATAGCTAGTGTAAGACATGTC
1 GCCAGTGTAAGACATGTCTGGGACATGCACCGGCCACGAAGATGATAGCCAGTGAAAGACATGTC
** *
94451028 TGGGACACGCATCGGCTAAGATTTGT
66 TGGGACACGCATCGGCTAAGATAAGC
* *
94451054 GCTAGTGTAAGACACGTCTGGGACATGCA
1 GCCAGTGTAAGACATGTCTGGGACATGCA
94451083 TCAGCACGTA
Statistics
Matches: 104, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
91 30 0.29
92 2 0.02
93 2 0.02
94 8 0.08
95 45 0.43
96 17 0.16
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.22
Consensus pattern (91 bp):
GCCAGTGTAAGACATGTCTGGGACATGCACCGGCCACGAAGATGATAGCCAGTGAAAGACATGTC
TGGGACACGCATCGGCTAAGATAAGC
Found at i:94451166 original size:49 final size:47
Alignment explanation
Indices: 94450868--94451185 Score: 245
Period size: 49 Copynumber: 6.7 Consensus size: 47
94450858 TTACTTGTAT
* * * *
94450868 GCCAGTGTAAGACATGTCTGAGACATGCACCGGCCACAAT-ATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGATA
* * * * * **
94450914 GCCAGTGAAAGACCATGTCTGGGATATGGCATCGGCGTAGA-GAATAAGC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGATG-ATGATA
* *
94450963 GCCAGTGTAAGACATGTCTGGGACATGCATTGGCCTCGACGATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGATA
* * * *
94451010 GCTAGTGTAAGACATGTCTGGGACACGCATCGG-CTAAGAT-TTG-T-
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGATGATGATA
* * * * * *
94451054 GCTAGTGTAAGACACGTCTGGGACATGCATCAG-CACGTATAGACGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCG-AT-GATGATA
* * * *
94451102 GCTAGTATAAAACCATGTCTGGGACATGGCATCAGCCTCGATGATGATA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGATGATGATA
*
94451151 GCCAGTGTAAGACCATGTCTGAGACATGGCATCGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGG
94451186 TAACATATCC
Statistics
Matches: 214, Mismatches: 44, Indels: 25
0.76 0.16 0.09
Matches are distributed among these distances:
43 1 0.00
44 33 0.15
45 1 0.00
46 16 0.07
47 57 0.27
48 32 0.15
49 62 0.29
50 9 0.04
51 3 0.01
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.22
Consensus pattern (47 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGATA
Found at i:94457598 original size:27 final size:27
Alignment explanation
Indices: 94457556--94457736 Score: 188
Period size: 27 Copynumber: 6.7 Consensus size: 27
94457546 GTTTTGCCCC
*
94457556 TGGTAAAATGACTATTTTGCCCTTATG
1 TGGTAAAATGATTATTTTGCCCTTATG
*
94457583 TGGTAAAATGATTATTTTGCCTTTATAG
1 TGGTAAAATGATTATTTTGCCCTTAT-G
*
94457611 -GGTAAAATGATTGTTTTGCCCTT-TG
1 TGGTAAAATGATTATTTTGCCCTTATG
* * * * *
94457636 TAGGGCAAAATAACTGTTTAGCCCTTATG
1 T--GGTAAAATGATTATTTTGCCCTTATG
*
94457665 TGCTAAAATGATTATTTTGCCCTTATG
1 TGGTAAAATGATTATTTTGCCCTTATG
* * *
94457692 AGGTAAAATGA-CAGTTTTACCCTTATG
1 TGGTAAAATGATTA-TTTTGCCCTTATG
*
94457719 TGGTAAAATGATTGTTTT
1 TGGTAAAATGATTATTTT
94457737 AACCCTAACT
Statistics
Matches: 126, Mismatches: 21, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
25 1 0.01
26 2 0.02
27 100 0.79
28 20 0.16
29 3 0.02
ACGTcount: A:0.28, C:0.12, G:0.19, T:0.41
Consensus pattern (27 bp):
TGGTAAAATGATTATTTTGCCCTTATG
Found at i:94457709 original size:82 final size:82
Alignment explanation
Indices: 94457560--94457715 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 82
94457550 TGCCCCTGGT
* * * * **
94457560 AAAATGACTATTTTGCCCTTATGTGGTAAAATGATTATTTTGCCTTTATAGGGTAAAATGATTGT
1 AAAATAACTATTTAGCCCTTATGTGCTAAAATGATTATTTTGCCCTTATAGGGTAAAATGACAGT
*
94457625 TTTGCCCTTTGTAGGGC
66 TTTACCCTTTGTAGGGC
*
94457642 AAAATAACTGTTTAGCCCTTATGTGCTAAAATGATTATTTTGCCCTTAT-GAGGTAAAATGACAG
1 AAAATAACTATTTAGCCCTTATGTGCTAAAATGATTATTTTGCCCTTATAG-GGTAAAATGACAG
94457706 TTTTACCCTT
65 TTTTACCCTT
94457716 ATGTGGTAAA
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
81 1 0.02
82 64 0.98
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.40
Consensus pattern (82 bp):
AAAATAACTATTTAGCCCTTATGTGCTAAAATGATTATTTTGCCCTTATAGGGTAAAATGACAGT
TTTACCCTTTGTAGGGC
Found at i:94457737 original size:27 final size:27
Alignment explanation
Indices: 94457556--94457769 Score: 166
Period size: 27 Copynumber: 7.9 Consensus size: 27
94457546 GTTTTGCCCC
* *
94457556 TGGTAAAATGACTATTTTGCCCTTATG
1 TGGTAAAATGACTGTTTTACCCTTATG
* * * *
94457583 TGGTAAAATGATTATTTTGCCTTTATAG
1 TGGTAAAATGACTGTTTTACCCTTAT-G
* *
94457611 -GGTAAAATGATTGTTTTGCCCTT-TG
1 TGGTAAAATGACTGTTTTACCCTTATG
* *
94457636 TAGGGCAAAATAACTG-TTTAGCCCTTATG
1 T--GGTAAAATGACTGTTTTA-CCCTTATG
* * * *
94457665 TGCTAAAATGATTATTTTGCCCTTATG
1 TGGTAAAATGACTGTTTTACCCTTATG
* *
94457692 AGGTAAAATGACAGTTTTACCCTTATG
1 TGGTAAAATGACTGTTTTACCCTTATG
* **
94457719 TGGTAAAATGATTGTTTTAACCC-TAAC
1 TGGTAAAATGACTGTTTT-ACCCTTATG
*
94457746 TGATAAAATGACTGTTTTAGCCCT
1 TGGTAAAATGACTGTTTTA-CCCT
94457770 CTGTGATATA
Statistics
Matches: 150, Mismatches: 27, Indels: 19
0.77 0.14 0.10
Matches are distributed among these distances:
25 1 0.01
26 2 0.01
27 121 0.81
28 23 0.15
29 3 0.02
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (27 bp):
TGGTAAAATGACTGTTTTACCCTTATG
Found at i:94461053 original size:40 final size:40
Alignment explanation
Indices: 94460959--94461183 Score: 224
Period size: 40 Copynumber: 5.6 Consensus size: 40
94460949 TATTCGAATG
* *
94460959 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GCGACT
* * * * *
94461000 ATAAT-CGGACTAAGATCTGAAGGCATTCGTGCGAGTTG-CT
1 AT-ATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-CGACT
* * *
94461040 ATATCCGGGCTAAGACCCGAAGGAATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGCGACT
* *
94461080 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGCGACT
* * *
94461120 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
* *
94461160 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
94461184 CTTATGCAAG
Statistics
Matches: 154, Mismatches: 23, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
39 3 0.02
40 122 0.79
41 26 0.17
42 3 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGCGACT
Found at i:94461139 original size:80 final size:80
Alignment explanation
Indices: 94460959--94461183 Score: 274
Period size: 80 Copynumber: 2.8 Consensus size: 80
94460949 TATTCGAATG
* * * *
94460959 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAAT-CGGACTAAGATCTGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTAT-ATCCGGGCTAAGACCCGAAGG
*
94461023 CATTCGTGCGAGTTGCT
64 CATTCGTGCGAGTCGCT
* * * * *
94461040 ATATCCGGGCTAAGACCCGAAGGAATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
94461105 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * *
94461120 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGC
94461184 CTTATGCAAG
Statistics
Matches: 122, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
79 3 0.02
80 88 0.72
81 31 0.25
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:94461173 original size:120 final size:121
Alignment explanation
Indices: 94460959--94461182 Score: 294
Period size: 120 Copynumber: 1.9 Consensus size: 121
94460949 TATTCGAATG
** * * *
94460959 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAATCGGACTAAGATCTGAAGGC
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAATCGGACTAAGATCCGAAGGC
* * *
94461024 ATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGAATTTGTGCTAGCGATT
66 ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGAATTTGTGCTAGCGATT
*
94461080 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTAT-ATCCGGGCTAAG-TCCCGAAG
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAAT-CGGACTAAGAT-CCGAAG
* *
94461142 GCATTTATGCTAG-TGACCACATCCGGGCTAAGACCCGAAGG
64 GCATTCATGCGAGTTG-CCACATCCGGGCTAAGACCCGAAGG
94461183 CCTTATGCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
119 5 0.06
120 53 0.60
121 31 0.35
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (121 bp):
ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAATCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGAATTTGTGCTAGCGATT
Found at i:94470630 original size:26 final size:26
Alignment explanation
Indices: 94470599--94470652 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
94470589 TATTATGAAA
* *
94470599 TTATACTTG-TAATATAAAGAGATGAT
1 TTATACATGTTAA-ATAAAGACATGAT
*
94470625 TTATACATGTTAAATAAATACATGAT
1 TTATACATGTTAAATAAAGACATGAT
94470651 TT
1 TT
94470653 GGAAAACATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.43, C:0.06, G:0.11, T:0.41
Consensus pattern (26 bp):
TTATACATGTTAAATAAAGACATGAT
Done.