Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 281 of 284
Found at i:94471661 original size:74 final size:74
Alignment explanation
Indices: 94471509--94471665 Score: 206
Period size: 74 Copynumber: 2.1 Consensus size: 74
94471499 GTGTGTTTTT
* * * * * *
94471509 GGCCGTGTGAAACCTACACCAAATTTCAAAATGAATTAATTGACTACACAGCTTAGAACATGGGC
1 GGCCGTGTGAAACCTACACAAAATTTCAAAATGAATTAATTAACCACACAGCCTAGAACACGAGC
****
94471574 ATGTGTTTT
66 ATGTGACAA
*
94471583 GGCCGTGTGAAACCTACACAAAATTTCAAAATGAATTAATTAACCACACAGCCTAGCACACGAGC
1 GGCCGTGTGAAACCTACACAAAATTTCAAAATGAATTAATTAACCACACAGCCTAGAACACGAGC
*
94471648 GTGTGACAA
66 ATGTGACAA
94471657 GGCCGTGTG
1 GGCCGTGTG
94471666 CACAAGTCAA
Statistics
Matches: 71, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
74 71 1.00
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (74 bp):
GGCCGTGTGAAACCTACACAAAATTTCAAAATGAATTAATTAACCACACAGCCTAGAACACGAGC
ATGTGACAA
Found at i:94471721 original size:13 final size:13
Alignment explanation
Indices: 94471703--94471727 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
94471693 AACATGTAAC
94471703 ACCCTACACCCGT
1 ACCCTACACCCGT
94471716 ACCCTACACCCG
1 ACCCTACACCCG
94471728 GATAGAATAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.56, G:0.08, T:0.12
Consensus pattern (13 bp):
ACCCTACACCCGT
Found at i:94473125 original size:47 final size:50
Alignment explanation
Indices: 94473052--94473230 Score: 149
Period size: 47 Copynumber: 3.7 Consensus size: 50
94473042 GGGTATAATA
* * *
94473052 CCGATGCCATGTTCCAGACTTGGTCTTACACTGGCTCA-AGTC-TC-AAG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATAGTCATCGAAG
* * * * * *
94473099 TCGATGCCATGTCCCAAACATAGTCTTACATTGACT-ATCGTCATCGAGG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATAGTCATCGAAG
* * *
94473148 CCGATGCCATGTCCCATACATGGTCTTACACTAGCTCAT--TCATATCCG-TG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATAGTC--AT-CGAAG
*
94473198 CCGATGGCC-TGTCCCGAACATGGTCTTACACTG
1 CCGAT-GCCATGTCCCAAACATGGTCTTACACTG
94473231 ACACATCTCA
Statistics
Matches: 105, Mismatches: 19, Indels: 13
0.77 0.14 0.09
Matches are distributed among these distances:
46 1 0.01
47 32 0.30
48 4 0.04
49 32 0.30
50 31 0.30
51 5 0.05
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (50 bp):
CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATAGTCATCGAAG
Found at i:94477081 original size:47 final size:46
Alignment explanation
Indices: 94476975--94477105 Score: 160
Period size: 47 Copynumber: 2.8 Consensus size: 46
94476965 TACCTTACGA
* *
94476975 GGCCGATGCATGTCCCAGACATTTCTTACACTAGCTCTCGTCTCAAT
1 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCG-ATCAAT
94477022 -GCCGATGACATGTCCCAGACATGGTCTTACACTAGCTCTC-AT-AATGT
1 GGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGATCAA--T
* *
94477069 GGCCGATGCATGTCACAAACATGTCTTACACTAGCTC
1 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTC
94477106 ACAAAAACCT
Statistics
Matches: 75, Mismatches: 4, Indels: 11
0.83 0.04 0.12
Matches are distributed among these distances:
45 2 0.03
46 23 0.31
47 27 0.36
48 23 0.31
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.27
Consensus pattern (46 bp):
GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGATCAAT
Found at i:94485826 original size:16 final size:16
Alignment explanation
Indices: 94485805--94485838 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
94485795 CTGAACATAT
94485805 TTCTTATTTATTTATA
1 TTCTTATTTATTTATA
94485821 TTCTTATTTATTTATA
1 TTCTTATTTATTTATA
94485837 TT
1 TT
94485839 TCAAAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.24, C:0.06, G:0.00, T:0.71
Consensus pattern (16 bp):
TTCTTATTTATTTATA
Found at i:94485884 original size:75 final size:74
Alignment explanation
Indices: 94485759--94485904 Score: 256
Period size: 75 Copynumber: 2.0 Consensus size: 74
94485749 TAATACAAAA
* *
94485759 ATATTTCACAAAAATTATACAACAAGGAAAATCATACTGAACATATTTCTTATTTATTTATATTC
1 ATATTTCAAAAAAATTATACAACAAGGAAAATCATACTGAACATACTTCTTATTTATTTATATTC
94485824 TTATTTATTT
66 TT-TTTATTT
*
94485834 ATATTTCAAAAAAATTATACAACAGGGAAAATCATACTGAACATACTTCTTATTTATTTATATTC
1 ATATTTCAAAAAAATTATACAACAAGGAAAATCATACTGAACATACTTCTTATTTATTTATATTC
94485899 TTTTTA
66 TTTTTA
94485905 AGTTAAAAGA
Statistics
Matches: 68, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
74 4 0.06
75 64 0.94
ACGTcount: A:0.40, C:0.12, G:0.05, T:0.42
Consensus pattern (74 bp):
ATATTTCAAAAAAATTATACAACAAGGAAAATCATACTGAACATACTTCTTATTTATTTATATTC
TTTTTATTT
Found at i:94486458 original size:70 final size:70
Alignment explanation
Indices: 94486345--94486486 Score: 257
Period size: 70 Copynumber: 2.0 Consensus size: 70
94486335 AATTGGATAT
* *
94486345 ATTTCTCATTATAATATACATATTGGTCCTTAGACTGGCAGTTGTCGGCTATCAGAAGGCTAATC
1 ATTTCTCATTATAATATACATACTGGTCCTTAGACTGGCAGTTGTCGGCTATCAGAAGGCCAATC
94486410 ACCAC
66 ACCAC
*
94486415 ATTTCTCATTATAATATACATACTGGTTCTTAGACTGGCAGTTGTCGGCTATCAGAAGGCCAATC
1 ATTTCTCATTATAATATACATACTGGTCCTTAGACTGGCAGTTGTCGGCTATCAGAAGGCCAATC
94486480 ACCAC
66 ACCAC
94486485 AT
1 AT
94486487 ACTTTTAAGT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
70 69 1.00
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (70 bp):
ATTTCTCATTATAATATACATACTGGTCCTTAGACTGGCAGTTGTCGGCTATCAGAAGGCCAATC
ACCAC
Found at i:94498843 original size:12 final size:12
Alignment explanation
Indices: 94498826--94498865 Score: 62
Period size: 12 Copynumber: 3.3 Consensus size: 12
94498816 GTGATCAGTT
94498826 GAGAGATTTGAG
1 GAGAGATTTGAG
*
94498838 GAGAGATGTGAG
1 GAGAGATTTGAG
*
94498850 GAGAGATTTTAG
1 GAGAGATTTGAG
94498862 GAGA
1 GAGA
94498866 AAATCGTGGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.35, C:0.00, G:0.42, T:0.23
Consensus pattern (12 bp):
GAGAGATTTGAG
Found at i:94499267 original size:31 final size:31
Alignment explanation
Indices: 94499231--94499294 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
94499221 TGCCCTCTCT
*
94499231 CTAAGTTGGCCGAATACTCT-CCCCTCTTTCC
1 CTAAGTTGGCCGAATACT-TACCCCGCTTTCC
*
94499262 CTAAGTTGGCTGAATACTTACCCCGCTTTCC
1 CTAAGTTGGCCGAATACTTACCCCGCTTTCC
94499293 CT
1 CT
94499295 TTTCTCTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 1 0.03
31 29 0.97
ACGTcount: A:0.17, C:0.36, G:0.14, T:0.33
Consensus pattern (31 bp):
CTAAGTTGGCCGAATACTTACCCCGCTTTCC
Found at i:94500376 original size:27 final size:27
Alignment explanation
Indices: 94500344--94500482 Score: 167
Period size: 27 Copynumber: 5.1 Consensus size: 27
94500334 ACCCTGATCA
94500344 GTAAAATGACTATTTTTCCCTTATGTG
1 GTAAAATGACTATTTTTCCCTTATGTG
* * * *
94500371 GCAAAATGACTGTTTTTCCTTTATATG
1 GTAAAATGACTATTTTTCCCTTATGTG
*
94500398 GTAAAATGACTATTTTGCCCTTATGTG
1 GTAAAATGACTATTTTTCCCTTATGTG
94500425 GTAAAATGA-TAGTTTTGT-CCTTATGTG
1 GTAAAATGACTA-TTTT-TCCCTTATGTG
* *
94500452 GTAAAATGA-TGATCTTTCCCTTATATG
1 GTAAAATGACT-ATTTTTCCCTTATGTG
94500479 GTAA
1 GTAA
94500483 GCTAACTGTT
Statistics
Matches: 96, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
26 3 0.03
27 92 0.96
28 1 0.01
ACGTcount: A:0.27, C:0.13, G:0.17, T:0.42
Consensus pattern (27 bp):
GTAAAATGACTATTTTTCCCTTATGTG
Found at i:94500479 original size:81 final size:81
Alignment explanation
Indices: 94500344--94500505 Score: 204
Period size: 81 Copynumber: 2.0 Consensus size: 81
94500334 ACCCTGATCA
* * *
94500344 GTAAAATGACTATTTTTCCCTTATGTGGCAAAATGACTGTTTTTCCTTTATATGGTAAAATGACT
1 GTAAAATGACTATTTTTCCCTTATGTGGCAAAATGACTGTCTTTCCCTTATATGGTAAAATAACT
*
94500409 ATTTTGCCCTTATGTG
66 ATTTTGCCCCTATGTG
* **
94500425 GTAAAATGA-TAGTTTTGT-CCTTATGTGGTAAAATGA-TGATCTTTCCCTTATATGGTAAGCTA
1 GTAAAATGACTA-TTTT-TCCCTTATGTGGCAAAATGACTG-TCTTTCCCTTATATGGTAAAATA
*
94500487 ACTGTTTTGCCCCTATGTG
63 ACTATTTTGCCCCTATGTG
94500506 ATATATGTTT
Statistics
Matches: 70, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
80 4 0.06
81 65 0.93
82 1 0.01
ACGTcount: A:0.25, C:0.15, G:0.18, T:0.42
Consensus pattern (81 bp):
GTAAAATGACTATTTTTCCCTTATGTGGCAAAATGACTGTCTTTCCCTTATATGGTAAAATAACT
ATTTTGCCCCTATGTG
Found at i:94500494 original size:54 final size:53
Alignment explanation
Indices: 94500344--94500505 Score: 177
Period size: 54 Copynumber: 3.0 Consensus size: 53
94500334 ACCCTGATCA
* *
94500344 GTAAAATGACTATTTTTCCCTTATGTGGCAAAATGACTGTTTT-TCCTTTATATG
1 GTAAAATGACTA-TTTTCCCTTATGTGGTAAAATGACTGTTTTGTCC-TTATGTG
94500398 GTAAAATGACTATTTTGCCCTTATGTGGTAAAATGA-TAGTTTTGTCCTTATGTG
1 GTAAAATGACTATTTT-CCCTTATGTGGTAAAATGACT-GTTTTGTCCTTATGTG
* ** * * *
94500452 GTAAAATGA-TGATCTTTCCCTTATATGGTAAGCTAACTGTTTTGCCCCTATGTG
1 GTAAAATGACT-AT-TTTCCCTTATGTGGTAAAATGACTGTTTTGTCCTTATGTG
94500506 ATATATGTTT
Statistics
Matches: 94, Mismatches: 8, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
53 6 0.06
54 81 0.86
55 7 0.07
ACGTcount: A:0.25, C:0.15, G:0.18, T:0.42
Consensus pattern (53 bp):
GTAAAATGACTATTTTCCCTTATGTGGTAAAATGACTGTTTTGTCCTTATGTG
Found at i:94501960 original size:24 final size:24
Alignment explanation
Indices: 94501924--94501971 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
94501914 TCTCAATCAA
*
94501924 TTCAAAATCTAAATTTGCAACTAT
1 TTCAAAATATAAATTTGCAACTAT
*
94501948 TTCAAAATATAAATTTGTAACTAT
1 TTCAAAATATAAATTTGCAACTAT
94501972 ACTCTAAAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.44, C:0.12, G:0.04, T:0.40
Consensus pattern (24 bp):
TTCAAAATATAAATTTGCAACTAT
Found at i:94503688 original size:12 final size:13
Alignment explanation
Indices: 94503668--94503700 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
94503658 AAGAACCAAC
94503668 GAAAGAAAAATTA
1 GAAAGAAAAATTA
94503681 GAAA-AAAAATTA
1 GAAAGAAAAATTA
*
94503693 GAAGGAAA
1 GAAAGAAA
94503701 GGCAAAGGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.70, C:0.00, G:0.18, T:0.12
Consensus pattern (13 bp):
GAAAGAAAAATTA
Found at i:94506521 original size:7 final size:7
Alignment explanation
Indices: 94506509--94506535 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
94506499 TTCAAAAGGG
94506509 TATGAAC
1 TATGAAC
94506516 TATGAAC
1 TATGAAC
94506523 TATGAAC
1 TATGAAC
94506530 TATGAA
1 TATGAA
94506536 AGATGAAATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.44, C:0.11, G:0.15, T:0.30
Consensus pattern (7 bp):
TATGAAC
Found at i:94508034 original size:21 final size:21
Alignment explanation
Indices: 94508001--94508042 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
94507991 TTTAAAAAAA
* * *
94508001 AACGCTGCTAAAGACTAGGAC
1 AACGCCGCCAAAGACCAGGAC
94508022 AACGCCGCCAAAGACCAGGAC
1 AACGCCGCCAAAGACCAGGAC
94508043 CTTTAGCGGC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.31, G:0.24, T:0.07
Consensus pattern (21 bp):
AACGCCGCCAAAGACCAGGAC
Found at i:94508116 original size:43 final size:43
Alignment explanation
Indices: 94508022--94508467 Score: 448
Period size: 43 Copynumber: 10.3 Consensus size: 43
94508012 AGACTAGGAC
* * * * *
94508022 AACGCCGCCAAAGACCAGGACCTTTAGCGGCGC-TTTTTCAAA
1 AACGCCGCTAAAGACCTGTACTTTTAGCGGCGCTTTTTTAAAA
*
94508064 AACGCCGCTAAATACCTGTACTTTTAGCGGCGCTTTTTTAAAA
1 AACGCCGCTAAAGACCTGTACTTTTAGCGGCGCTTTTTTAAAA
* *
94508107 AACGCCGCTAGAGACCATG-ACCTTTTAGCGGCGCTTTTATAAAA
1 AACGCCGCTAAAGACC-TGTA-CTTTTAGCGGCGCTTTTTTAAAA
* *
94508151 AA-GCCGCTATAGACCTGTACTTTTAGCGGCGCTTTTATAAAAAA
1 AACGCCGCTAAAGACCTGTACTTTTAGCGGCGCTTTT-T-TAAAA
* * * * * * *
94508195 AAAGCCGCAAAAGACCAGGACCTTTAGCAGCGCTTTTATAAAA
1 AACGCCGCTAAAGACCTGTACTTTTAGCGGCGCTTTTTTAAAA
* * *
94508238 AACGCTGCTATAGACCTGTACTTTTAGCGGCGCTTTTATAAAAAA
1 AACGCCGCTAAAGACCTGTACTTTTAGCGGCGCTTTT-T-TAAAA
* * * * * * *
94508283 AAAGCCGCAAAAGACCAGGACCTTTAGCAGCGCTTTTATAAAA
1 AACGCCGCTAAAGACCTGTACTTTTAGCGGCGCTTTTTTAAAA
* * *
94508326 AACGCTGCTATAGACCTGTACTTTTAGCGGCGCTTTTATAAAAAA
1 AACGCCGCTAAAGACCTGTACTTTTAGCGGCGCTTTT-T-TAAAA
* * * * * * *
94508371 AAAGCCGCAAAAGACCAGGACCTTTAGCAGCGCTTTTATAAAA
1 AACGCCGCTAAAGACCTGTACTTTTAGCGGCGCTTTTTTAAAA
* *
94508414 AACGCTGCTATAGACCTGTACTTTTAGCGGCGCTTTTTTAAAA
1 AACGCCGCTAAAGACCTGTACTTTTAGCGGCGCTTTTTTAAAA
94508457 AACGCCGCTAA
1 AACGCCGCTAA
94508468 TTTGCCCAGT
Statistics
Matches: 322, Mismatches: 71, Indels: 21
0.78 0.17 0.05
Matches are distributed among these distances:
42 47 0.15
43 149 0.46
44 32 0.10
45 94 0.29
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.26
Consensus pattern (43 bp):
AACGCCGCTAAAGACCTGTACTTTTAGCGGCGCTTTTTTAAAA
Found at i:94508250 original size:88 final size:88
Alignment explanation
Indices: 94508025--94508458 Score: 705
Period size: 88 Copynumber: 5.0 Consensus size: 88
94508015 CTAGGACAAC
* * * * * *
94508025 GCCGCCAAAGACCAGGACCTTTAGCGGCGCTTTT-TCAAAAACGCCGCTAAATACCTGTACTTTT
1 GCCGCAAAAGACCAGGACCTTTAGCAGCGCTTTTATAAAAAACGCTGCTATAGACCTGTACTTTT
* *
94508089 AGCGGCGCTTTT-T-TAAAAAAC
66 AGCGGCGCTTTTATAAAAAAAAA
* * * * *
94508110 GCCGCTAGAGACCATGACCTTTTAGCGGCGCTTTTATAAAAAA-GCCGCTATAGACCTGTACTTT
1 GCCGCAAAAGACCAGGACC-TTTAGCAGCGCTTTTATAAAAAACGCTGCTATAGACCTGTACTTT
94508174 TAGCGGCGCTTTTATAAAAAAAAA
65 TAGCGGCGCTTTTATAAAAAAAAA
94508198 GCCGCAAAAGACCAGGACCTTTAGCAGCGCTTTTATAAAAAACGCTGCTATAGACCTGTACTTTT
1 GCCGCAAAAGACCAGGACCTTTAGCAGCGCTTTTATAAAAAACGCTGCTATAGACCTGTACTTTT
94508263 AGCGGCGCTTTTATAAAAAAAAA
66 AGCGGCGCTTTTATAAAAAAAAA
94508286 GCCGCAAAAGACCAGGACCTTTAGCAGCGCTTTTATAAAAAACGCTGCTATAGACCTGTACTTTT
1 GCCGCAAAAGACCAGGACCTTTAGCAGCGCTTTTATAAAAAACGCTGCTATAGACCTGTACTTTT
94508351 AGCGGCGCTTTTATAAAAAAAAA
66 AGCGGCGCTTTTATAAAAAAAAA
94508374 GCCGCAAAAGACCAGGACCTTTAGCAGCGCTTTTATAAAAAACGCTGCTATAGACCTGTACTTTT
1 GCCGCAAAAGACCAGGACCTTTAGCAGCGCTTTTATAAAAAACGCTGCTATAGACCTGTACTTTT
*
94508439 AGCGGCGCTTTTTTAAAAAA
66 AGCGGCGCTTTTATAAAAAA
94508459 CGCCGCTAAT
Statistics
Matches: 330, Mismatches: 14, Indels: 7
0.94 0.04 0.02
Matches are distributed among these distances:
85 16 0.05
86 47 0.14
87 29 0.09
88 238 0.72
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (88 bp):
GCCGCAAAAGACCAGGACCTTTAGCAGCGCTTTTATAAAAAACGCTGCTATAGACCTGTACTTTT
AGCGGCGCTTTTATAAAAAAAAA
Found at i:94508790 original size:21 final size:21
Alignment explanation
Indices: 94508766--94508813 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
94508756 TCCTGTTCTG
94508766 CTCCGCCTCCCTCGCTGCTGC
1 CTCCGCCTCCCTCGCTGCTGC
*
94508787 CTCCGCCTCCCTCGCTGCTTC
1 CTCCGCCTCCCTCGCTGCTGC
94508808 CTCCGC
1 CTCCGC
94508814 TCTAAGTTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.00, C:0.58, G:0.17, T:0.25
Consensus pattern (21 bp):
CTCCGCCTCCCTCGCTGCTGC
Found at i:94514677 original size:40 final size:40
Alignment explanation
Indices: 94514372--94514661 Score: 535
Period size: 40 Copynumber: 7.2 Consensus size: 40
94514362 TCCTCGTTCA
94514372 AATGCCTTCGGGACATTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGAC-TTAACCCGGATTTAATAACTCGCACG
94514413 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
94514453 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
94514493 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
94514533 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
94514573 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
94514613 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
94514653 AAGGCCTTC
1 AATGCCTTC
94514662 AGATCTTGAT
Statistics
Matches: 245, Mismatches: 4, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
40 231 0.94
41 14 0.06
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:94526813 original size:40 final size:40
Alignment explanation
Indices: 94526739--94526947 Score: 289
Period size: 40 Copynumber: 5.2 Consensus size: 40
94526729 AACCCAAGTA
* * *
94526739 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
94526778 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
94526818 CCTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATG
*
94526861 CCTTCGGGACTTCGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
94526901 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
94526941 CCTTCGG
1 CCTTCGG
94526948 ATCTTAGTCC
Statistics
Matches: 153, Mismatches: 10, Indels: 13
0.87 0.06 0.07
Matches are distributed among these distances:
39 13 0.08
40 102 0.67
41 1 0.01
43 36 0.24
44 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:94526862 original size:83 final size:82
Alignment explanation
Indices: 94526739--94526959 Score: 317
Period size: 83 Copynumber: 2.7 Consensus size: 82
94526729 AACCCAAGTA
* *
94526739 CCTTCGGGATTTAG-CCGGATATAGC-A-ACTCGCACACATGCCTTCGGGTCTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAGCAACACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAT
94526801 AGTCACTAGCACAAATG
66 AGTCACTAGCACAAATG
* * *
94526818 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTCGCCCGGATA
1 CCTTCGGGACTTAGCCCGGATATAGCAAC-ACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATA
94526883 TAGTCACTAGCACAAATG
65 TAGTCACTAGCACAAATG
* * * *
94526901 CCTTCGGGACTTAGCCCGGATATA--ATCACTAGCACAAATGCCTTCGGATCTTAGTCCGG
1 CCTTCGGGACTTAGCCCGGATATAGCAACACTCGCACAAATGCCTTCGGGTCTTAGCCCGG
94526960 TTATCATTCG
Statistics
Matches: 126, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
79 13 0.10
80 37 0.29
81 3 0.02
83 73 0.58
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.24
Consensus pattern (82 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAT
AGTCACTAGCACAAATG
Found at i:94533822 original size:27 final size:27
Alignment explanation
Indices: 94533791--94533968 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
94533781 TAAATTGTAC
94533791 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
94533818 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
94533844 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* *
94533872 GGCACTAAGTGTGCTAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
94533900 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
94533927 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
94533954 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
94533969 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 105 0.83
28 22 0.17
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:94533905 original size:82 final size:81
Alignment explanation
Indices: 94533792--94533947 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
94533782 AAATTGTACA
* *
94533792 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
94533856 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
94533873 GCACTAAGTGTGCTAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
94533938 TGCGAGTTGA
65 TGCGAATTGA
94533948 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 14 0.21
82 51 0.77
83 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:94533959 original size:82 final size:81
Alignment explanation
Indices: 94533788--94533968 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
94533778 GATTAAATTG
* *
94533788 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
94533853 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
94533869 TGCGGCACTAAGTGTGCTAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
94533933 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
94533951 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
94533969 GACTCAATAT
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 17 0.21
82 65 0.79
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:94537965 original size:73 final size:74
Alignment explanation
Indices: 94537878--94538025 Score: 273
Period size: 73 Copynumber: 2.0 Consensus size: 74
94537868 ATTACAGAAT
94537878 TCATGTACACAATTGCACACTAAACCACTTTTCATATATATATTTATATATAT-TT-CCAAATAA
1 TCATGTACACAATTGCACACTAAACCACTTTTCATATATATATTTATATATATATTCCCAAATAA
94537941 TAATATATA
66 TAATATATA
94537950 TNCATGTACACAATTGCACACTAAACCACTTTTCATATATATATTTATATATATATTCCCAAATA
1 T-CATGTACACAATTGCACACTAAACCACTTTTCATATATATATTTATATATATATTCCCAAATA
94538015 ATAATATATA
65 ATAATATATA
94538025 T
1 T
94538026 TTATCTTATA
Statistics
Matches: 73, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
72 1 0.01
73 52 0.71
74 2 0.03
75 18 0.25
ACGTcount: A:0.41, C:0.17, G:0.03, T:0.39
Consensus pattern (74 bp):
TCATGTACACAATTGCACACTAAACCACTTTTCATATATATATTTATATATATATTCCCAAATAA
TAATATATA
Found at i:94538042 original size:15 final size:15
Alignment explanation
Indices: 94538018--94538047 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
94538008 CCAAATAATA
*
94538018 ATATATATTTATCTT
1 ATATACATTTATCTT
94538033 ATATACATTTATCTT
1 ATATACATTTATCTT
94538048 CTAAATTAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.57
Consensus pattern (15 bp):
ATATACATTTATCTT
Found at i:94538443 original size:25 final size:25
Alignment explanation
Indices: 94538415--94538466 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
94538405 TTTCTAGCTA
94538415 ATAGTTCAACAAATGCTAATTCCAC
1 ATAGTTCAACAAATGCTAATTCCAC
94538440 ATAGTTCAACAAATGCTAATTCCAC
1 ATAGTTCAACAAATGCTAATTCCAC
94538465 AT
1 AT
94538467 TCAAAATCAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.40, C:0.23, G:0.08, T:0.29
Consensus pattern (25 bp):
ATAGTTCAACAAATGCTAATTCCAC
Found at i:94538666 original size:36 final size:38
Alignment explanation
Indices: 94538625--94538700 Score: 102
Period size: 39 Copynumber: 2.0 Consensus size: 38
94538615 CTTCAAATAC
* * *
94538625 TAGTTAACTCCTAAACC-G-TAAATCTTAAACCATATA
1 TAGTTAACTCATAAACCTGCTAAACCCTAAACCATATA
94538661 TAGTTAACTCATAAACCTGCTTAAACCCTAAACCATATA
1 TAGTTAACTCATAAACCTGC-TAAACCCTAAACCATATA
94538700 T
1 T
94538701 CTTAAACTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
36 16 0.47
37 1 0.03
39 17 0.50
ACGTcount: A:0.41, C:0.24, G:0.05, T:0.30
Consensus pattern (38 bp):
TAGTTAACTCATAAACCTGCTAAACCCTAAACCATATA
Found at i:94538937 original size:41 final size:41
Alignment explanation
Indices: 94538880--94539198 Score: 363
Period size: 41 Copynumber: 8.0 Consensus size: 41
94538870 GTTATATGAC
*
94538880 TTTTAGCTGC-TTTTACCGAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
*
94538920 TTTTAGCGGCGTTTTACCGAAAGCGCCACTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
94538961 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
* *
94539002 TTTTAGTGGCGTTTTATCC-AAAGCGCCGCTAATGATCTGGT
1 TTTTAGCGGCGTTTTA-CCGAAAGCGCCGCTAATGCTCTGGT
* * *
94539043 TTTTAGCGGCGTTTTACCCAAA--G-CGC-AATGATTTGGT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
* *
94539080 TTTTAGTGGCGTTTTAACGAAAGCGCCGCTAATGCTCT-GT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
* * * * **
94539120 TTTTAGCGACGTTTTTTA-CTAAAACACCGCTGTTGCTCT-G-
1 TTTTAGCGGCG--TTTTACCGAAAGCGCCGCTAATGCTCTGGT
* * *
94539160 TTTTAGCGGCGTTTTTCTTGAAA-CGCCGCTATTGCTCTG
1 TTTTAGCGGCGTTTTAC-CGAAAGCGCCGCTAATGCTCTG
94539199 TATTTTAAAA
Statistics
Matches: 242, Mismatches: 25, Indels: 24
0.83 0.09 0.08
Matches are distributed among these distances:
37 29 0.12
38 7 0.03
39 15 0.06
40 38 0.16
41 146 0.60
42 7 0.03
ACGTcount: A:0.18, C:0.22, G:0.24, T:0.36
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
Found at i:94539189 original size:39 final size:39
Alignment explanation
Indices: 94539098--94539199 Score: 116
Period size: 39 Copynumber: 2.5 Consensus size: 39
94539088 GCGTTTTAAC
*
94539098 GAAAGCGCCGCTAATGCTCTGTTTTTAGCGACGTTTTTTACT
1 GAAA-CGCCGCTATTGCTCTG-TTTTAGCGACGTTTTTTA-T
* * * *
94539140 AAAACACCGCTGTTGCTCTGTTTTAGCGGCGTTTTTCT-T
1 GAAACGCCGCTATTGCTCTGTTTTAGCGACGTTTTT-TAT
94539179 GAAACGCCGCTATTGCTCTGT
1 GAAACGCCGCTATTGCTCTGT
94539200 ATTTTAAAAT
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
39 19 0.37
40 15 0.29
41 14 0.27
42 3 0.06
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.37
Consensus pattern (39 bp):
GAAACGCCGCTATTGCTCTGTTTTAGCGACGTTTTTTAT
Found at i:94551610 original size:14 final size:15
Alignment explanation
Indices: 94551590--94551620 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
94551580 AAATCAACAT
94551590 TTAAAAACCAAATAG
1 TTAAAAACCAAATAG
94551605 TTAAAAACCAAATAG
1 TTAAAAACCAAATAG
94551620 T
1 T
94551621 CCAAGAGTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.58, C:0.13, G:0.06, T:0.23
Consensus pattern (15 bp):
TTAAAAACCAAATAG
Found at i:94552763 original size:26 final size:26
Alignment explanation
Indices: 94552734--94552809 Score: 143
Period size: 26 Copynumber: 2.9 Consensus size: 26
94552724 ATTGATAAAA
*
94552734 GGTTAGGTAAATGTTCCATGATAATG
1 GGTTAGGTAAATGTTTCATGATAATG
94552760 GGTTAGGTAAATGTTTCATGATAATG
1 GGTTAGGTAAATGTTTCATGATAATG
94552786 GGTTAGGTAAATGTTTCATGATAA
1 GGTTAGGTAAATGTTTCATGATAA
94552810 GAATTTCATG
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.32, C:0.05, G:0.26, T:0.37
Consensus pattern (26 bp):
GGTTAGGTAAATGTTTCATGATAATG
Found at i:94557402 original size:33 final size:33
Alignment explanation
Indices: 94557353--94557476 Score: 203
Period size: 33 Copynumber: 3.8 Consensus size: 33
94557343 CTCTATTTCA
*
94557353 GGTTGCTGGATAGGAGCTGGAATGTGAGTGTTT
1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
* *
94557386 GGTTGCTAGACGGGAGCTGGAATGTGAGTGTTT
1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
*
94557419 GGTTTCTGGACAGGAGCTGGAATGTGAGTGTTT
1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
*
94557452 GGTTGCTGGACAGTAGCTGGAATGT
1 GGTTGCTGGACAGGAGCTGGAATGT
94557477 CAAGAAGAAA
Statistics
Matches: 83, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 83 1.00
ACGTcount: A:0.19, C:0.09, G:0.41, T:0.31
Consensus pattern (33 bp):
GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
Found at i:94559537 original size:18 final size:18
Alignment explanation
Indices: 94559514--94559552 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
94559504 TTTAAAAATA
*
94559514 TGGGCCCATATGCCCGTG
1 TGGGCCCACATGCCCGTG
94559532 TGGGCCCACATGCCCGTG
1 TGGGCCCACATGCCCGTG
94559550 TGG
1 TGG
94559553 TCTACACACC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.10, C:0.33, G:0.36, T:0.21
Consensus pattern (18 bp):
TGGGCCCACATGCCCGTG
Found at i:94562292 original size:42 final size:42
Alignment explanation
Indices: 94562233--94562317 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
94562223 ACTATTTTAA
94562233 TTTGATAGTTTTCCCAACATTAGAGGGAGAGAAATAATAACT
1 TTTGATAGTTTTCCCAACATTAGAGGGAGAGAAATAATAACT
94562275 TTTGATAGTTTTCCCAACATTAGAGGGAGAGAAATAATAACT
1 TTTGATAGTTTTCCCAACATTAGAGGGAGAGAAATAATAACT
94562317 T
1 T
94562318 ATAATGAGTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.32
Consensus pattern (42 bp):
TTTGATAGTTTTCCCAACATTAGAGGGAGAGAAATAATAACT
Found at i:94562831 original size:32 final size:32
Alignment explanation
Indices: 94562793--94562857 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
94562783 GCAAATGAAG
94562793 TAGTTTTGCAAAACGGAATAAAATATGAAGTT
1 TAGTTTTGCAAAACGGAATAAAATATGAAGTT
94562825 TAGTTTTGCAAAACGGAATAAAATATGAAGTT
1 TAGTTTTGCAAAACGGAATAAAATATGAAGTT
94562857 T
1 T
94562858 TTGCTAAGTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.43, C:0.06, G:0.18, T:0.32
Consensus pattern (32 bp):
TAGTTTTGCAAAACGGAATAAAATATGAAGTT
Found at i:94565925 original size:21 final size:21
Alignment explanation
Indices: 94565900--94565941 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
94565890 TCATGCAATA
94565900 ACAGATATTTTAATGATGATG
1 ACAGATATTTTAATGATGATG
94565921 ACAGATATTTTAATGATGATG
1 ACAGATATTTTAATGATGATG
94565942 TTGATGGTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.05, G:0.19, T:0.38
Consensus pattern (21 bp):
ACAGATATTTTAATGATGATG
Found at i:94568680 original size:25 final size:25
Alignment explanation
Indices: 94568659--94568709 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
94568649 TTCTAAAGTT
94568659 TGTTTAGAAAATAATTGATAAATAA
1 TGTTTAGAAAATAATTGATAAATAA
94568684 TGTTTAGAAAATAATTGATAAATAA
1 TGTTTAGAAAATAATTGATAAATAA
94568709 T
1 T
94568710 ATATTTCGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.51, C:0.00, G:0.12, T:0.37
Consensus pattern (25 bp):
TGTTTAGAAAATAATTGATAAATAA
Found at i:94573179 original size:40 final size:40
Alignment explanation
Indices: 94573085--94573309 Score: 240
Period size: 40 Copynumber: 5.6 Consensus size: 40
94573075 TATTCGAATG
*
94573085 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * * *
94573126 ATAACCGGACTAAGATCCGAAGGCATTCGTACGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* * *
94573166 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* * * *
94573206 ATATCTGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
94573246 ATATCCGGGCTAAG-TCCTGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGATCC-GAAGGCATTTGTGCTAGTGACT
* *
94573286 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
94573310 CTTGTACAAG
Statistics
Matches: 154, Mismatches: 25, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
39 3 0.02
40 120 0.78
41 30 0.19
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:94573268 original size:80 final size:80
Alignment explanation
Indices: 94573085--94573345 Score: 285
Period size: 80 Copynumber: 3.3 Consensus size: 80
94573075 TATTCGAATG
* * * *
94573085 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
94573150 ATTCGTACGAGTTGCT
65 ATTCGTACGAGTCGCT
* * * * *
94573166 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCTGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * *
94573231 TTTGTGCTAG-CGACT
66 TTCGTACGAGTCG-CT
* * * * *
94573246 ATATCCGGGCTAAGTCCTGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * *
94573311 TT-GTACAAGTAGTT
66 TTCGTACGAGTCGCT
*
94573325 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
94573346 ATTTCTTGAG
Statistics
Matches: 149, Mismatches: 29, Indels: 7
0.81 0.16 0.04
Matches are distributed among these distances:
78 13 0.09
79 13 0.09
80 91 0.61
81 32 0.21
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTACGAGTCGCT
Found at i:94573299 original size:120 final size:121
Alignment explanation
Indices: 94573085--94573309 Score: 294
Period size: 120 Copynumber: 1.9 Consensus size: 121
94573075 TATTCGAATG
** * *
94573085 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * *
94573150 ATTCGTACGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
66 ATTCATACGAGTTGCCACATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
* * *
94573206 ATATCTGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCTGAAGG
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCC-GAAGG
* * *
94573269 CATTTATGCTAG-TGACCACATCCGGGCTAAGACCCGAAGGC
65 CATTCATACGAGTTG-CCACATCCGGGCTAAGACCCGAAGGC
94573310 CTTGTACAAG
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
119 5 0.06
120 54 0.61
121 30 0.34
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (121 bp):
ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATACGAGTTGCCACATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
Found at i:94578138 original size:104 final size:103
Alignment explanation
Indices: 94577888--94578152 Score: 413
Period size: 103 Copynumber: 2.6 Consensus size: 103
94577878 AACCGTTATT
* * * * *
94577888 GGTGGATCTCGCACTTAGCACCACCACTTAATCGGGGAATCAGCACTTAGCAACCCCTTGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATTGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
** *
94577953 ATCAGCACATAGCAACCCCCTTTTTATTTCAGAGATAC
66 ATCAGCACATAGCAACCCCCTTTACATTTCAAAGATAC
*
94577991 GGTGGATATCGCACTTAGCACCACCAATGAACTGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATTGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
94578056 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
66 ATCAGCACATAGCAACCCCCTTT-ACATTTCAAAGATAC
* **
94578095 GGTGGATATCGCACATAGCACCACCAATGAATTGGGGAATCAGCACACAGCAACCCCT
1 GGTGGATATCGCACTTAGCACCACCAATGAATTGGGGAATCAGCACTTAGCAACCCCT
94578153 TTATGTACAA
Statistics
Matches: 148, Mismatches: 13, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
103 82 0.55
104 66 0.45
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (103 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATTGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTACATTTCAAAGATAC
Found at i:94578514 original size:30 final size:29
Alignment explanation
Indices: 94578480--94578544 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
94578470 TAATCCACCA
94578480 CCCAACTTTTTGAAAAATTACAATTTTGCC
1 CCCAAC-TTTTGAAAAATTACAATTTTGCC
* * * *
94578510 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGAAAAATTACAATTTTGCC
94578540 CCCAA
1 CCCAA
94578545 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 2 0.07
30 25 0.83
31 3 0.10
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (29 bp):
CCCAACTTTTGAAAAATTACAATTTTGCC
Found at i:94578518 original size:31 final size:30
Alignment explanation
Indices: 94578487--94578544 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
94578477 CCACCCAACT
94578487 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * *
94578517 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
94578545 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:94579348 original size:98 final size:98
Alignment explanation
Indices: 94579179--94579377 Score: 380
Period size: 98 Copynumber: 2.0 Consensus size: 98
94579169 CACTATTTAC
*
94579179 AATTTAGTCCTTTTGACTAAATTGAGTGCCCAAACGTCGAAATTTTCGAACGAAATTTTTACGAA
1 AATTTAGTCCTTTTGACTAAATTGAGTGCCCAAACATCGAAATTTTCGAACGAAATTTTTACGAA
94579244 AATTTTCCGTGAAATTGTAGACCATAAAAATAT
66 AATTTTCCGTGAAATTGTAGACCATAAAAATAT
*
94579277 AATTTAGTCCTTTTGACTAAATTGAGTGCCCAAACATCGATATTTTCGAACGAAATTTTTACGAA
1 AATTTAGTCCTTTTGACTAAATTGAGTGCCCAAACATCGAAATTTTCGAACGAAATTTTTACGAA
94579342 AATTTTCCGTGAAATTGTAGACCATAAAAATAT
66 AATTTTCCGTGAAATTGTAGACCATAAAAATAT
94579375 AAT
1 AAT
94579378 AATAACCATA
Statistics
Matches: 99, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
98 99 1.00
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34
Consensus pattern (98 bp):
AATTTAGTCCTTTTGACTAAATTGAGTGCCCAAACATCGAAATTTTCGAACGAAATTTTTACGAA
AATTTTCCGTGAAATTGTAGACCATAAAAATAT
Found at i:94583697 original size:16 final size:16
Alignment explanation
Indices: 94583678--94583708 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
94583668 CTTCTTCACT
94583678 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
94583694 TACTTACTTACTTAA
1 TACTCACTTACTTAA
94583709 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:94583714 original size:20 final size:20
Alignment explanation
Indices: 94583675--94583714 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
94583665 AAACTTCTTC
* *
94583675 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
94583695 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
94583715 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:94584095 original size:55 final size:53
Alignment explanation
Indices: 94583952--94584160 Score: 190
Period size: 55 Copynumber: 3.9 Consensus size: 53
94583942 ATCCTTTTGA
* * * *
94583952 AACTTACCATTGCCATGTTTTGACATGGTCTTACATGGTATCCTTGCCTTATG
1 AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
* *
94584005 AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAG
1 AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGGATCC-TTGCCTTAT-G
* ** ***
94584059 TAACTTATTAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-G
1 -AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
* ** *
94584112 AAACCTTACCAATTGCCATACCTT-AGCATGGTCTTACATGGTATCCTTG
1 -AA-CTCACCAA-TGCCATGTCTTGA-CATGGTCTTACATGGGATCCTTG
94584161 AACCCTAATG
Statistics
Matches: 128, Mismatches: 21, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
52 2 0.02
53 46 0.36
54 8 0.06
55 70 0.55
56 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (53 bp):
AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
Found at i:94588680 original size:5 final size:5
Alignment explanation
Indices: 94588670--94588694 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
94588660 AATTCAAATC
94588670 ATAAA ATAAA ATAAA ATAAA ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA
94588695 TTTTTATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
ATAAA
Found at i:94590246 original size:14 final size:14
Alignment explanation
Indices: 94590227--94590255 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
94590217 TCTCGCGGCT
94590227 TGCCTATCTTGACC
1 TGCCTATCTTGACC
94590241 TGCCTATCTTGACC
1 TGCCTATCTTGACC
94590255 T
1 T
94590256 AGGCCTACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.34, G:0.14, T:0.38
Consensus pattern (14 bp):
TGCCTATCTTGACC
Found at i:94592525 original size:20 final size:20
Alignment explanation
Indices: 94592500--94592537 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
94592490 TATACATTTT
94592500 CTAAGCTTAATCAACTAATG
1 CTAAGCTTAATCAACTAATG
94592520 CTAAGCTTAATCAACTAA
1 CTAAGCTTAATCAACTAA
94592538 CCTTTATAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (20 bp):
CTAAGCTTAATCAACTAATG
Found at i:94594563 original size:29 final size:30
Alignment explanation
Indices: 94594531--94594601 Score: 128
Period size: 29 Copynumber: 2.4 Consensus size: 30
94594521 AGCCGAAGCT
94594531 ATCCCTTTTCATAT-TTGATGGTCGTCACC
1 ATCCCTTTTCATATGTTGATGGTCGTCACC
94594560 ATCCCTTTTCAT-TGTTGATGGTCGTCACC
1 ATCCCTTTTCATATGTTGATGGTCGTCACC
94594589 ATCCCTTTTCATA
1 ATCCCTTTTCATA
94594602 ATCGATAGCC
Statistics
Matches: 40, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
28 1 0.03
29 39 0.98
ACGTcount: A:0.17, C:0.28, G:0.13, T:0.42
Consensus pattern (30 bp):
ATCCCTTTTCATATGTTGATGGTCGTCACC
Found at i:94594621 original size:29 final size:29
Alignment explanation
Indices: 94594589--94594716 Score: 150
Period size: 29 Copynumber: 4.4 Consensus size: 29
94594579 GGTCGTCACC
* *
94594589 ATCCCTTTTCATAATCGATAGCCAAAGAT
1 ATCCCTTTTCATAATCGATAGCCGAAGCT
* *
94594618 ATCCTTTTTCAT-ATCTGATAACCGAAGCT
1 ATCCCTTTTCATAATC-GATAGCCGAAGCT
* * *
94594647 ATCCCTTTTCATAATTGATAGCTGAAGTT
1 ATCCCTTTTCATAATCGATAGCCGAAGCT
* *
94594676 ATCCCTTTTCATAATCAATAGTCGAAGCT
1 ATCCCTTTTCATAATCGATAGCCGAAGCT
*
94594705 ATCCTTTTTCAT
1 ATCCCTTTTCAT
94594717 GTTCGATGAT
Statistics
Matches: 82, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
28 3 0.04
29 77 0.94
30 2 0.02
ACGTcount: A:0.29, C:0.23, G:0.10, T:0.38
Consensus pattern (29 bp):
ATCCCTTTTCATAATCGATAGCCGAAGCT
Found at i:94594680 original size:87 final size:86
Alignment explanation
Indices: 94594471--94594716 Score: 255
Period size: 87 Copynumber: 2.8 Consensus size: 86
94594461 GAAGTTCATC
* *
94594471 ACCATCCCTTTTCATAATCGATAGCCGAAACTA-CCCTTTTCATAATCGATAGCCGAAGCTATCC
1 ACCATCCCTTTTCATAATTGATAGCTG-AACTATCCCTTTTCATAATCGATAGCCGAAGCTATCC
* * *** *
94594535 CTTTTCATATTTGATGGTCGTC
65 TTTTTCATATCTGATAACCGTA
** * * * * *
94594557 ACCATCCCTTTTCATTGTTGAT-GGTCGTCACCATCCCTTTTCATAATCGATAGCCAAAGATATC
1 ACCATCCCTTTTCATAATTGATAGCT-G-AACTATCCCTTTTCATAATCGATAGCCGAAGCTATC
94594621 CTTTTTCATATCTGATAACCG-A
64 CTTTTTCATATCTGATAACCGTA
* * * *
94594643 AGCTATCCCTTTTCATAATTGATAGCTGAAGTTATCCCTTTTCATAATCAATAGTCGAAGCTATC
1 A-CCATCCCTTTTCATAATTGATAGCTGAA-CTATCCCTTTTCATAATCGATAGCCGAAGCTATC
94594708 CTTTTTCAT
64 CTTTTTCAT
94594717 GTTCGATGAT
Statistics
Matches: 128, Mismatches: 27, Indels: 9
0.78 0.16 0.05
Matches are distributed among these distances:
85 1 0.01
86 25 0.20
87 100 0.78
88 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.12, T:0.37
Consensus pattern (86 bp):
ACCATCCCTTTTCATAATTGATAGCTGAACTATCCCTTTTCATAATCGATAGCCGAAGCTATCCT
TTTTCATATCTGATAACCGTA
Found at i:94595339 original size:40 final size:40
Alignment explanation
Indices: 94595294--94595373 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
94595284 TCTAAAATGA
94595294 CATAGATTCATCAATGGAAAAATTCAAAATCTTTAACAGT
1 CATAGATTCATCAATGGAAAAATTCAAAATCTTTAACAGT
94595334 CATAGATTCATCAATGGAAAAATTCAAAATCTTTAACAGT
1 CATAGATTCATCAATGGAAAAATTCAAAATCTTTAACAGT
94595374 TTCAAAAACG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.45, C:0.15, G:0.10, T:0.30
Consensus pattern (40 bp):
CATAGATTCATCAATGGAAAAATTCAAAATCTTTAACAGT
Found at i:94600469 original size:18 final size:18
Alignment explanation
Indices: 94600437--94600495 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
94600427 TAGCCCATTT
* *
94600437 CAGTAATAGTAATCAGTG
1 CAGTAACAGGAATCAGTG
* * *
94600455 CAGTAACCATG-ATCAATA
1 CAGTAA-CAGGAATCAGTG
94600473 CAGTAACAGGAATCAGTG
1 CAGTAACAGGAATCAGTG
94600491 CAGTA
1 CAGTA
94600496 CGCAAGCAGA
Statistics
Matches: 31, Mismatches: 8, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
17 3 0.10
18 27 0.87
19 1 0.03
ACGTcount: A:0.41, C:0.17, G:0.20, T:0.22
Consensus pattern (18 bp):
CAGTAACAGGAATCAGTG
Found at i:94600672 original size:18 final size:18
Alignment explanation
Indices: 94600649--94600684 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
94600639 GTTGCCAGTA
94600649 TAGTAGGCTTAAAGCCAT
1 TAGTAGGCTTAAAGCCAT
94600667 TAGTAGGCTTAAAGCCAT
1 TAGTAGGCTTAAAGCCAT
94600685 ACCAGTACAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (18 bp):
TAGTAGGCTTAAAGCCAT
Found at i:94600858 original size:27 final size:27
Alignment explanation
Indices: 94600816--94600971 Score: 206
Period size: 27 Copynumber: 5.8 Consensus size: 27
94600806 GAACAAATCT
* * *
94600816 GTCATTTTATCTTACAAGGGTATTATA
1 GTCATTTTACCTTACAGGGGTAATATA
* * *
94600843 GTTATTTTACCCTACAGGGGTAATACA
1 GTCATTTTACCTTACAGGGGTAATATA
* *
94600870 ATCATTTTACCTTACGGGGGTAATATA
1 GTCATTTTACCTTACAGGGGTAATATA
*
94600897 GTCATTTTACCATACAGGGGT-ATATA
1 GTCATTTTACCTTACAGGGGTAATATA
* *
94600923 GTCATTTTACCCTACAGGGGTAATAAA
1 GTCATTTTACCTTACAGGGGTAATATA
94600950 GTCATTTTACCTTACAGGGGTA
1 GTCATTTTACCTTACAGGGGTA
94600972 TTTCGGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
26 25 0.23
27 86 0.77
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCTTACAGGGGTAATATA
Found at i:94600934 original size:80 final size:81
Alignment explanation
Indices: 94600816--94600971 Score: 244
Period size: 80 Copynumber: 1.9 Consensus size: 81
94600806 GAACAAATCT
* * *
94600816 GTCATTTTATCTTACAAGGGTATTATAGTTATTTTACCCTACAGGGGTAATACAA-TCATTTTAC
1 GTCATTTTACCATACAAGGGTATTATAGTCATTTTACCCTACAGGGGTAATA-AAGTCATTTTAC
*
94600880 CTTACGGGGGTAATATA
65 CTTACAGGGGTAATATA
*
94600897 GTCATTTTACCATACAGGGGTA-TATAGTCATTTTACCCTACAGGGGTAATAAAGTCATTTTACC
1 GTCATTTTACCATACAAGGGTATTATAGTCATTTTACCCTACAGGGGTAATAAAGTCATTTTACC
94600961 TTACAGGGGTA
66 TTACAGGGGTA
94600972 TTTCGGTCAC
Statistics
Matches: 69, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
79 2 0.03
80 48 0.70
81 19 0.28
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Consensus pattern (81 bp):
GTCATTTTACCATACAAGGGTATTATAGTCATTTTACCCTACAGGGGTAATAAAGTCATTTTACC
TTACAGGGGTAATATA
Found at i:94600953 original size:53 final size:53
Alignment explanation
Indices: 94600816--94600972 Score: 206
Period size: 53 Copynumber: 2.9 Consensus size: 53
94600806 GAACAAATCT
* * * * *
94600816 GTCATTTTATCTTACAAGGGTATTATAGTTATTTTACCCTACAGGGGTAATACA
1 GTCATTTTACCTTACAGGGGTAATATAGTCATTTTACCATACAGGGGT-ATACA
* * *
94600870 ATCATTTTACCTTACGGGGGTAATATAGTCATTTTACCATACAGGGGTATATA
1 GTCATTTTACCTTACAGGGGTAATATAGTCATTTTACCATACAGGGGTATACA
* * *
94600923 GTCATTTTACCCTACAGGGGTAATAAAGTCATTTTACCTTACAGGGGTAT
1 GTCATTTTACCTTACAGGGGTAATATAGTCATTTTACCATACAGGGGTAT
94600973 TTCGGTCACT
Statistics
Matches: 90, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
53 49 0.54
54 41 0.46
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.36
Consensus pattern (53 bp):
GTCATTTTACCTTACAGGGGTAATATAGTCATTTTACCATACAGGGGTATACA
Found at i:94601007 original size:27 final size:27
Alignment explanation
Indices: 94600987--94601063 Score: 127
Period size: 27 Copynumber: 2.9 Consensus size: 27
94600977 GTCACTTTAT
* *
94600987 CACATAAGAGCAAAATCGTCATTTTGC
1 CACATAAGGGCAAAATAGTCATTTTGC
*
94601014 CACATAAGGGCAAAATAGTTATTTTGC
1 CACATAAGGGCAAAATAGTCATTTTGC
94601041 CACATAAGGGCAAAATAGTCATT
1 CACATAAGGGCAAAATAGTCATT
94601064 CTATCTTATA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.39, C:0.18, G:0.17, T:0.26
Consensus pattern (27 bp):
CACATAAGGGCAAAATAGTCATTTTGC
Found at i:94603375 original size:47 final size:47
Alignment explanation
Indices: 94603320--94603447 Score: 177
Period size: 47 Copynumber: 2.7 Consensus size: 47
94603310 AATCTATAAG
* *
94603320 TACCTATACCATGGCTCGTAGCCAAATCAAGGTAACTTATCC-CGGAG
1 TACCTATACCATGGCTCGTAGCCAAATCAAGGTAAC-TACCCTCGGAA
* * * * *
94603367 TGCCTATACCATGGCCCATAGCCAAATCAAGGTAACTCCCCTCTGAA
1 TACCTATACCATGGCTCGTAGCCAAATCAAGGTAACTACCCTCGGAA
94603414 TACCTATACCATGGCTCGTAGCCAAATCAAGGTA
1 TACCTATACCATGGCTCGTAGCCAAATCAAGGTA
94603448 TCCCTCGCAC
Statistics
Matches: 70, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
46 3 0.04
47 67 0.96
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (47 bp):
TACCTATACCATGGCTCGTAGCCAAATCAAGGTAACTACCCTCGGAA
Found at i:94606500 original size:25 final size:25
Alignment explanation
Indices: 94606466--94606537 Score: 92
Period size: 25 Copynumber: 2.9 Consensus size: 25
94606456 TATTGTACAT
94606466 GTATGCTCACACAAGCTGTGAATCG
1 GTATGCTCACACAAGCTGTGAATCG
**
94606491 GTATGCTCACATGAGCTGTGAATCG
1 GTATGCTCACACAAGCTGTGAATCG
**
94606516 GTGCGCTCACACGAA-CTGTGAA
1 GTATGCTCACAC-AAGCTGTGAA
94606538 AATGGGCCTG
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
25 39 0.98
26 1 0.03
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (25 bp):
GTATGCTCACACAAGCTGTGAATCG
Found at i:94609714 original size:42 final size:41
Alignment explanation
Indices: 94609666--94609778 Score: 118
Period size: 42 Copynumber: 2.7 Consensus size: 41
94609656 ACATATAATT
94609666 TCATATCAATGCCATATCTCAGATATGGTCTTACATGAAATA
1 TCATATCAATGCCATATC-CAGATATGGTCTTACATGAAATA
* * * *
94609708 TCATATCAATGCCATGTCCTTGACATGGTCTTATATGAAATA
1 TCATATCAATGCCATATCC-AGATATGGTCTTACATGAAATA
* * * * *
94609750 ACATACCGAGGCCATATCCCAAATATGGT
1 TCATATCAATGCCATAT-CCAGATATGGT
94609779 TGTAACATCC
Statistics
Matches: 57, Mismatches: 12, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
41 1 0.02
42 54 0.95
43 2 0.04
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.31
Consensus pattern (41 bp):
TCATATCAATGCCATATCCAGATATGGTCTTACATGAAATA
Found at i:94611620 original size:20 final size:20
Alignment explanation
Indices: 94611560--94611620 Score: 95
Period size: 20 Copynumber: 3.0 Consensus size: 20
94611550 ATAAATATGG
94611560 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
* *
94611580 CACGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
*
94611600 TATGTATGTTATGCACATGA
1 TATGTATGATATGCACATGA
94611620 T
1 T
94611621 GTATTCATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.34
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:94611710 original size:23 final size:24
Alignment explanation
Indices: 94611669--94611721 Score: 81
Period size: 23 Copynumber: 2.2 Consensus size: 24
94611659 GGAGGAAGTG
*
94611669 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGACTTATGCCCCAGTTAT
94611693 TAAAAGGACTT-TGCCCCAGTTAT
1 TAAAAGGACTTATGCCCCAGTTAT
*
94611716 TGAAAG
1 TAAAAG
94611722 AGGCTAGGCC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 17 0.63
24 10 0.37
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (24 bp):
TAAAAGGACTTATGCCCCAGTTAT
Found at i:94611972 original size:31 final size:31
Alignment explanation
Indices: 94611934--94611997 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
94611924 CGTTTACAGT
94611934 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
94611965 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
94611996 AA
1 AA
94611998 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:94617651 original size:38 final size:38
Alignment explanation
Indices: 94617602--94617684 Score: 114
Period size: 38 Copynumber: 2.2 Consensus size: 38
94617592 CACAACCTTG
* *
94617602 CATCTAATTCATACACCAT-TTCATCATCCACATAAGTT
1 CATCTATTTCATACACCATATT-ATCAACCACATAAGTT
* *
94617640 CATCTATTTCATACACCATATTGTCAACCACATAGGTT
1 CATCTATTTCATACACCATATTATCAACCACATAAGTT
94617678 CATCTAT
1 CATCTAT
94617685 CTTATACTCT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
38 38 0.95
39 2 0.05
ACGTcount: A:0.33, C:0.28, G:0.05, T:0.35
Consensus pattern (38 bp):
CATCTATTTCATACACCATATTATCAACCACATAAGTT
Found at i:94617951 original size:40 final size:40
Alignment explanation
Indices: 94617899--94617993 Score: 127
Period size: 40 Copynumber: 2.4 Consensus size: 40
94617889 TATCTCGACA
*
94617899 TCGCACATTTAGTGCCACATATAGCCAAAGCTATTTCAAC
1 TCGCACACTTAGTGCCACATATAGCCAAAGCTATTTCAAC
* ** * * *
94617939 TCGCACACTTAGTGCTATTTATGGCCGAAGCTATTTCAAT
1 TCGCACACTTAGTGCCACATATAGCCAAAGCTATTTCAAC
94617979 TCGCACACTTAGTGC
1 TCGCACACTTAGTGC
94617994 AGAACATAGT
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 48 1.00
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.31
Consensus pattern (40 bp):
TCGCACACTTAGTGCCACATATAGCCAAAGCTATTTCAAC
Found at i:94621137 original size:13 final size:13
Alignment explanation
Indices: 94621119--94621143 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
94621109 CTGAGCACAC
94621119 GCCCGTGTCCCTG
1 GCCCGTGTCCCTG
94621132 GCCCGTGTCCCT
1 GCCCGTGTCCCT
94621144 CACATGGCTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.48, G:0.28, T:0.24
Consensus pattern (13 bp):
GCCCGTGTCCCTG
Found at i:94622530 original size:42 final size:42
Alignment explanation
Indices: 94622483--94622607 Score: 126
Period size: 42 Copynumber: 3.0 Consensus size: 42
94622473 CATATAATAT
* * *
94622483 CATATCAATGCCATATCCCAGATATAGTCTTACATGAAATGC-
1 CATATCGATGCCATATCCCAGATATGGTCTTACACGAAAT-CA
* ** * * *
94622525 CATATCGATGCCATGTCCTTGACATGGTCTTATACGGAATCA
1 CATATCGATGCCATATCCCAGATATGGTCTTACACGAAATCA
* * *
94622567 CATATTGAGGCCATATCCCAGATATGGTCTTACACGGAATC
1 CATATCGATGCCATATCCCAGATATGGTCTTACACGAAATC
94622608 TCAATAACTA
Statistics
Matches: 66, Mismatches: 16, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
41 1 0.02
42 65 0.98
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (42 bp):
CATATCGATGCCATATCCCAGATATGGTCTTACACGAAATCA
Found at i:94631575 original size:27 final size:27
Alignment explanation
Indices: 94631533--94631678 Score: 202
Period size: 27 Copynumber: 5.4 Consensus size: 27
94631523 TGGATAAGTT
** *
94631533 GTAGAATTACTAAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
94631560 GTAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
* *
94631587 ATAGAATTACCAAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
* *
94631614 GTAGAAATACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
* *
94631641 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCTTGTAGG
*
94631668 GTAAAATTACC
1 GTAGAATTACC
94631679 ATTTTGCCCC
Statistics
Matches: 105, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 105 1.00
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCTTGTAGG
Found at i:94632374 original size:27 final size:26
Alignment explanation
Indices: 94632330--94632381 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
94632320 CTCGCTGTAA
*
94632330 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
94632357 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
94632382 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:94632474 original size:27 final size:26
Alignment explanation
Indices: 94632422--94632480 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
94632412 ACATATATAT
*
94632422 ATATCTGTTCTGGTGGCCTAGACACA
1 ATATCTGTTCTGGTGACCTAGACACA
* * *
94632448 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGACACA
94632475 ATATCT
1 ATATCT
94632481 AGCAGCCTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.36
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGACACA
Found at i:94635925 original size:17 final size:17
Alignment explanation
Indices: 94635903--94635941 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
94635893 TCAAAAGATT
94635903 GAAGCGATTCTGGAATG
1 GAAGCGATTCTGGAATG
94635920 GAAGCGATTCTGGAATG
1 GAAGCGATTCTGGAATG
94635937 GAAGC
1 GAAGC
94635942 CACTGAGGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.31, C:0.13, G:0.36, T:0.21
Consensus pattern (17 bp):
GAAGCGATTCTGGAATG
Found at i:94639236 original size:25 final size:25
Alignment explanation
Indices: 94639191--94639240 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
94639181 CCTTATAATA
* *
94639191 TGAAAATGACCTTTTTGCCCCTAGG
1 TGAAAATGACCTTTATACCCCTAGG
94639216 TGAAAATGA-CTATTATACCCCTAGG
1 TGAAAATGACCT-TTATACCCCTAGG
94639241 GTTATGTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 2 0.09
25 20 0.91
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (25 bp):
TGAAAATGACCTTTATACCCCTAGG
Found at i:94639299 original size:10 final size:10
Alignment explanation
Indices: 94639284--94639318 Score: 61
Period size: 10 Copynumber: 3.4 Consensus size: 10
94639274 TTTGTGCATA
94639284 ATATGCCATG
1 ATATGCCATG
94639294 ATATGCACATG
1 ATATGC-CATG
94639305 ATATGCCATG
1 ATATGCCATG
94639315 ATAT
1 ATAT
94639319 ATACATATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 14 0.58
11 10 0.42
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Consensus pattern (10 bp):
ATATGCCATG
Found at i:94639324 original size:21 final size:20
Alignment explanation
Indices: 94639284--94639330 Score: 67
Period size: 21 Copynumber: 2.3 Consensus size: 20
94639274 TTTGTGCATA
*
94639284 ATATGCCATGATATGCACAT
1 ATATGCCATGATATACACAT
*
94639304 GATATGCCATGATATATACAT
1 -ATATGCCATGATATACACAT
94639325 ATATGC
1 ATATGC
94639331 ATGGGTTGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 6 0.25
21 18 0.75
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (20 bp):
ATATGCCATGATATACACAT
Found at i:94639435 original size:24 final size:25
Alignment explanation
Indices: 94639364--94639433 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
94639354 GAGGAAGTGT
* * *
94639364 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
94639389 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
94639414 AAAAGGGATTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
94639434 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:94645692 original size:25 final size:25
Alignment explanation
Indices: 94645644--94645694 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
94645634 TACCCTTATA
* *
94645644 ATGTGAAAATGACCTTTTTGCCCCT
1 ATGTGAAAATGACCTTTATACCCCT
94645669 ATGTGAAAATGA-CTATTATACCCCT
1 ATGTGAAAATGACCT-TTATACCCCT
94645694 A
1 A
94645695 GGGTTATGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 2 0.09
25 21 0.91
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (25 bp):
ATGTGAAAATGACCTTTATACCCCT
Found at i:94645755 original size:10 final size:10
Alignment explanation
Indices: 94645740--94645774 Score: 61
Period size: 10 Copynumber: 3.4 Consensus size: 10
94645730 TTTGTGCATA
94645740 ATATGCCATG
1 ATATGCCATG
94645750 ATATGCACATG
1 ATATGC-CATG
94645761 ATATGCCATG
1 ATATGCCATG
94645771 ATAT
1 ATAT
94645775 ATACATATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 14 0.58
11 10 0.42
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Consensus pattern (10 bp):
ATATGCCATG
Found at i:94645780 original size:21 final size:20
Alignment explanation
Indices: 94645740--94645786 Score: 67
Period size: 21 Copynumber: 2.3 Consensus size: 20
94645730 TTTGTGCATA
*
94645740 ATATGCCATGATATGCACAT
1 ATATGCCATGATATACACAT
*
94645760 GATATGCCATGATATATACAT
1 -ATATGCCATGATATACACAT
94645781 ATATGC
1 ATATGC
94645787 ATGGGTTGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 6 0.25
21 18 0.75
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (20 bp):
ATATGCCATGATATACACAT
Found at i:94645848 original size:25 final size:25
Alignment explanation
Indices: 94645820--94645914 Score: 145
Period size: 25 Copynumber: 3.8 Consensus size: 25
94645810 GAGGAAGTGC
*
94645820 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
94645845 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* * *
94645870 AAAAGGGCTTTACCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
94645895 AAAAGGACTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
94645915 ATTAAAGGAG
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 64 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:94646173 original size:31 final size:31
Alignment explanation
Indices: 94646135--94646218 Score: 125
Period size: 31 Copynumber: 2.7 Consensus size: 31
94646125 CGTTTACAAT
*
94646135 AAAGGCTTCGGCACAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* * *
94646166 AAAGGCTTCAGCCCAGTGGTATGAATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
94646197 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
94646219 CTGAGATTGA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
30 4 0.09
31 43 0.91
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:94650904 original size:18 final size:18
Alignment explanation
Indices: 94650878--94650920 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
94650868 AATCCAAAAC
* *
94650878 AATGCAATCTGTAGGGAA
1 AATGAAATCAGTAGGGAA
94650896 AATGAAATCAGTAGGGAA
1 AATGAAATCAGTAGGGAA
94650914 AAT-AAAT
1 AATGAAAT
94650921 TTATCAACTC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 4 0.17
18 19 0.83
ACGTcount: A:0.49, C:0.07, G:0.23, T:0.21
Consensus pattern (18 bp):
AATGAAATCAGTAGGGAA
Found at i:94677139 original size:53 final size:53
Alignment explanation
Indices: 94677072--94677177 Score: 203
Period size: 53 Copynumber: 2.0 Consensus size: 53
94677062 CTAATAAATG
*
94677072 TTCACATCAAACTGTCCACACGAGTCATAGTCACTTAATTATTTATAATTTGA
1 TTCACATCAAACTGTCCAAACGAGTCATAGTCACTTAATTATTTATAATTTGA
94677125 TTCACATCAAACTGTCCAAACGAGTCATAGTCACTTAATTATTTATAATTTGA
1 TTCACATCAAACTGTCCAAACGAGTCATAGTCACTTAATTATTTATAATTTGA
94677178 GCTACAGAGC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.35, C:0.20, G:0.09, T:0.36
Consensus pattern (53 bp):
TTCACATCAAACTGTCCAAACGAGTCATAGTCACTTAATTATTTATAATTTGA
Found at i:94678155 original size:67 final size:64
Alignment explanation
Indices: 94678017--94678200 Score: 203
Period size: 64 Copynumber: 2.8 Consensus size: 64
94678007 ATATAGTTCG
* * * * * *
94678017 GCTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGC--CAGTTTATCTCGT
1 GCTCTCTTGT-CTACATGGTGTACACATAGAACCACCCATGCGACCTAGCTACA-TATATCCCGT
94678079 A
64 A
* * *
94678080 GCTCTCTTGTCTACATGGTGTCCTTCACCTAGAACCACGCATGCGACCTAGCTACATATATCCCG
1 GCTCTCTTGTCTACATGGTG---TACACATAGAACCACCCATGCGACCTAGCTACATATATCCCG
94678145 TA
63 TA
* *
94678147 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACAT
1 GCTCTCTTGTCTACATGGTGTACACATAGAACCACCCATGCGACCTAGCTACAT
94678201 CATAATGTCT
Statistics
Matches: 102, Mismatches: 13, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.18
64 29 0.28
66 23 0.23
67 29 0.28
68 2 0.02
ACGTcount: A:0.23, C:0.30, G:0.17, T:0.29
Consensus pattern (64 bp):
GCTCTCTTGTCTACATGGTGTACACATAGAACCACCCATGCGACCTAGCTACATATATCCCGTA
Found at i:94678768 original size:70 final size:70
Alignment explanation
Indices: 94678544--94678768 Score: 159
Period size: 75 Copynumber: 3.1 Consensus size: 70
94678534 TTATGTATGA
94678544 TAATTCAATGCACTTCATGTACCATAGACATATTTTTAAATCAATTCATAAACTTGGCACCATAA
1 TAATTCAATGCACTTCATGTACCATAGACATATTTTTAAATCAATTCATAAACTTGGCACCATAA
94678609 TCATT
66 TCATT
* * * * * * * ** * * * *
94678614 TAATTTAACATAATTCAATTAATGCACTAAATACA-ATTTCCCAAA--ATATCCATAATCATAGA
1 TAA-TT--C--AATGCACTTCATGTACCATAGACATATTT-TTAAATCA-ATTCATAAAC-TTGG
* * * *
94678676 AATCACATTTATGTATGA
58 CA-C-CA-TAAT-CAT-T
94678694 TAATTCAATGCACTTCATGTACCATAGACATATTTTTAAATCAATTCATAAACTTGGCACCATAA
1 TAATTCAATGCACTTCATGTACCATAGACATATTTTTAAATCAATTCATAAACTTGGCACCATAA
94678759 TCATT
66 TCATT
94678764 TAATT
1 TAATT
94678769 TAACATAATT
Statistics
Matches: 105, Mismatches: 34, Indels: 32
0.61 0.20 0.19
Matches are distributed among these distances:
70 8 0.08
71 4 0.04
72 3 0.03
73 4 0.04
74 13 0.12
75 46 0.44
76 13 0.12
77 4 0.04
78 3 0.03
79 4 0.04
80 3 0.03
ACGTcount: A:0.40, C:0.18, G:0.06, T:0.36
Consensus pattern (70 bp):
TAATTCAATGCACTTCATGTACCATAGACATATTTTTAAATCAATTCATAAACTTGGCACCATAA
TCATT
Found at i:94678802 original size:150 final size:150
Alignment explanation
Indices: 94678495--94678795 Score: 584
Period size: 150 Copynumber: 2.0 Consensus size: 150
94678485 CATATGAACT
*
94678495 TACAATTTCCCATAATATCCATAATCATAGAAATCACATTTATGTATGATAATTCAATGCACTTC
1 TACAATTTCCCAAAATATCCATAATCATAGAAATCACATTTATGTATGATAATTCAATGCACTTC
94678560 ATGTACCATAGACATATTTTTAAATCAATTCATAAACTTGGCACCATAATCATTTAATTTAACAT
66 ATGTACCATAGACATATTTTTAAATCAATTCATAAACTTGGCACCATAATCATTTAATTTAACAT
94678625 AATTCAATTAATGCACTAAA
131 AATTCAATTAATGCACTAAA
94678645 TACAATTTCCCAAAATATCCATAATCATAGAAATCACATTTATGTATGATAATTCAATGCACTTC
1 TACAATTTCCCAAAATATCCATAATCATAGAAATCACATTTATGTATGATAATTCAATGCACTTC
94678710 ATGTACCATAGACATATTTTTAAATCAATTCATAAACTTGGCACCATAATCATTTAATTTAACAT
66 ATGTACCATAGACATATTTTTAAATCAATTCATAAACTTGGCACCATAATCATTTAATTTAACAT
*
94678775 AATTCAATTAATTCACTAAA
131 AATTCAATTAATGCACTAAA
94678795 T
1 T
94678796 TTAATTTTCA
Statistics
Matches: 149, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
150 149 1.00
ACGTcount: A:0.41, C:0.18, G:0.06, T:0.36
Consensus pattern (150 bp):
TACAATTTCCCAAAATATCCATAATCATAGAAATCACATTTATGTATGATAATTCAATGCACTTC
ATGTACCATAGACATATTTTTAAATCAATTCATAAACTTGGCACCATAATCATTTAATTTAACAT
AATTCAATTAATGCACTAAA
Found at i:94679119 original size:30 final size:30
Alignment explanation
Indices: 94679085--94679145 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
94679075 TCCTTAACTC
94679085 AAACTTTAGAAAAATTACAATTTTGCCCCT
1 AAACTTTAGAAAAATTACAATTTTGCCCCT
* * * * *
94679115 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTAGAAAAATTACAATTTTGCCCCT
94679145 A
1 A
94679146 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.38
Consensus pattern (30 bp):
AAACTTTAGAAAAATTACAATTTTGCCCCT
Found at i:94681315 original size:65 final size:65
Alignment explanation
Indices: 94681211--94681380 Score: 340
Period size: 65 Copynumber: 2.6 Consensus size: 65
94681201 ACAAAATCAA
94681211 AAGCATATAACATGGTATTCATTTAATGATTAAACATCCTATCTGGTGGTCCGTTTAGGATGTTT
1 AAGCATATAACATGGTATTCATTTAATGATTAAACATCCTATCTGGTGGTCCGTTTAGGATGTTT
94681276 AAGCATATAACATGGTATTCATTTAATGATTAAACATCCTATCTGGTGGTCCGTTTAGGATGTTT
1 AAGCATATAACATGGTATTCATTTAATGATTAAACATCCTATCTGGTGGTCCGTTTAGGATGTTT
94681341 AAGCATATAACATGGTATTCATTTAATGATTAAACATCCT
1 AAGCATATAACATGGTATTCATTTAATGATTAAACATCCT
94681381 CAATTAAACC
Statistics
Matches: 105, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 105 1.00
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.38
Consensus pattern (65 bp):
AAGCATATAACATGGTATTCATTTAATGATTAAACATCCTATCTGGTGGTCCGTTTAGGATGTTT
Found at i:94683062 original size:44 final size:44
Alignment explanation
Indices: 94682971--94683278 Score: 361
Period size: 44 Copynumber: 7.0 Consensus size: 44
94682961 TCAGGAATGT
* * * * * ***
94682971 CAAATCTGCTATCTTTGATTTGCTCCCTGACAATACGGAGGTTC
1 CAAATCTACTATCTTCGATCTGCTCTCTGACAATACAGAGACGC
* *
94683015 CAAACCTACTATCTTCGATCTTCTCTCTGACAATACAGAGACGC
1 CAAATCTACTATCTTCGATCTGCTCTCTGACAATACAGAGACGC
* * *
94683059 CAAATCTATTATCTTCGATCTTCTCTCTAACAATACAGAGACGC
1 CAAATCTACTATCTTCGATCTGCTCTCTGACAATACAGAGACGC
* *
94683103 TAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGC
1 CAAATCTACTATCTTCGATCTGCTCTCTGACAATACAGAGACGC
* * ** *
94683147 CAAATCTTCTATC-TCTGATCTGCTCTCCGTTAATACAGAGATGC
1 CAAATCTACTATCTTC-GATCTGCTCTCTGACAATACAGAGACGC
* * * * *
94683191 CAGATGT-C-ATCTTCGATCTGCTCTCTGTCAATACAAAGATGC
1 CAAATCTACTATCTTCGATCTGCTCTCTGACAATACAGAGACGC
94683233 CAAATCTACTATCTTCGATCTGCTCTCTGACAATACAGAGACGC
1 CAAATCTACTATCTTCGATCTGCTCTCTGACAATACAGAGACGC
94683277 CA
1 CA
94683279 GATGTCACCG
Statistics
Matches: 226, Mismatches: 34, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
42 33 0.15
43 6 0.03
44 187 0.83
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.31
Consensus pattern (44 bp):
CAAATCTACTATCTTCGATCTGCTCTCTGACAATACAGAGACGC
Found at i:94683259 original size:130 final size:131
Alignment explanation
Indices: 94682971--94683278 Score: 368
Period size: 130 Copynumber: 2.4 Consensus size: 131
94682961 TCAGGAATGT
* * * * ***
94682971 CAAATCTGCTATCTTTGATTTGCTCCCTGACAATACGGAGGTTCCAAACCTACTATCTTCGATCT
1 CAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAACCTACTATCTTCGATCT
* * * * *
94683036 TCTCTCTGACAATACAGAGACGCCAAATCTATTATCTTCGATCTTCTCTCTAACAATACAGAGAC
66 GCTCTCCGACAATACAGAGACGCCAAA-CTATCATCTTCGATCTGCTCTCTAACAATACAAAGAC
94683101 GC
130 GC
* * *
94683103 TAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTTCTATC-TCTGATC
1 CAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAACCTACTATCTTC-GATC
** * * * ** *
94683167 TGCTCTCCGTTAATACAGAGATGCCAGA-TGTCATCTTCGATCTGCTCTCTGTCAATACAAAGAT
65 TGCTCTCCGACAATACAGAGACGCCAAACTATCATCTTCGATCTGCTCTCTAACAATACAAAGAC
94683231 GC
130 GC
*
94683233 CAAATCTACTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCA
1 CAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCA
94683279 GATGTCACCG
Statistics
Matches: 150, Mismatches: 25, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
130 75 0.50
131 2 0.01
132 73 0.49
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.31
Consensus pattern (131 bp):
CAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAACCTACTATCTTCGATCT
GCTCTCCGACAATACAGAGACGCCAAACTATCATCTTCGATCTGCTCTCTAACAATACAAAGACG
C
Found at i:94683295 original size:86 final size:86
Alignment explanation
Indices: 94683025--94683285 Score: 353
Period size: 86 Copynumber: 3.0 Consensus size: 86
94683015 CAAACCTACT
* * * *
94683025 ATCTTCGATCTTCTCTCTGACAATACAGAGACGCCAAATCTATTATCTTCGATCTTCTCTCTAAC
1 ATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACTATCTTCGATCTGCTCTCTGAC
* * *
94683090 AATACAGAGACGCTAAATCTGC
66 AATACAGAGACGCCAGATGT-C
* *
94683112 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTTCTATC-TCTGATCTGCTCTCCG
1 -ATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACTATCTTC-GATCTGCTCTCTG
** *
94683176 TTAATACAGAGATGCCAGATGTC
64 ACAATACAGAGACGCCAGATGTC
* * *
94683199 ATCTTCGATCTGCTCTCTGTCAATACAAAGATGCCAAATCTACTATCTTCGATCTGCTCTCTGAC
1 ATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACTATCTTCGATCTGCTCTCTGAC
94683264 AATACAGAGACGCCAGATGTC
66 AATACAGAGACGCCAGATGTC
94683285 A
1 A
94683286 CCGGTGATCT
Statistics
Matches: 151, Mismatches: 20, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
86 76 0.50
87 5 0.03
88 70 0.46
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.30
Consensus pattern (86 bp):
ATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACTATCTTCGATCTGCTCTCTGAC
AATACAGAGACGCCAGATGTC
Found at i:94689614 original size:29 final size:29
Alignment explanation
Indices: 94689551--94689618 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
94689541 TAATCAACCG
*
94689551 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
94689580 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
94689609 CGCACACTTA
1 CGCACACTTA
94689619 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:94689788 original size:29 final size:29
Alignment explanation
Indices: 94689725--94689792 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
94689715 TAATCAACCG
94689725 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
94689754 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
94689783 CGCACACTTA
1 CGCACACTTA
94689793 CCTTTTCTGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:94689933 original size:29 final size:30
Alignment explanation
Indices: 94689894--94689972 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
94689884 CTTAATAATC
94689894 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
94689924 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
94689953 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
94689973 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:94689966 original size:174 final size:174
Alignment explanation
Indices: 94689440--94689941 Score: 914
Period size: 174 Copynumber: 2.9 Consensus size: 174
94689430 AACTCAAGGT
* * *
94689440 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTCTA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
94689505 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
94689570 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
94689614 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* * *
94689679 GAAAATATATATTGGGTTCCCACACATAGTGCTCAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
94689744 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
94689788 ACTTACCTTTTCTGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
94689853 GAAAATATATATTGGGTACGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
*
94689918 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
94689942 TGTACAATTT
Statistics
Matches: 315, Mismatches: 13, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 315 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:94696900 original size:29 final size:29
Alignment explanation
Indices: 94696837--94696904 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
94696827 TAATCAACCG
94696837 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
94696866 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
94696895 CGCACACTTA
1 CGCACACTTA
94696905 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:94697074 original size:29 final size:29
Alignment explanation
Indices: 94697011--94697078 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
94697001 TAATCAACCG
*
94697011 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
94697040 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
94697069 CGCACACTTA
1 CGCACACTTA
94697079 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:94697219 original size:29 final size:30
Alignment explanation
Indices: 94697180--94697258 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
94697170 CTTAATAATC
94697180 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
94697210 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
94697239 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
94697259 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:94697252 original size:174 final size:174
Alignment explanation
Indices: 94696726--94697227 Score: 968
Period size: 174 Copynumber: 2.9 Consensus size: 174
94696716 AACTCAAGGT
* *
94696726 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
94696791 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
94696856 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
94696900 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
94696965 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
94697030 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
94697074 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
94697139 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
*
94697204 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
94697228 TGTACAATTT
Statistics
Matches: 324, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
174 324 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:94697711 original size:199 final size:200
Alignment explanation
Indices: 94697365--94697763 Score: 773
Period size: 199 Copynumber: 2.0 Consensus size: 200
94697355 CTCTACTTAC
94697365 ATATACATTTGTATACATTTCATCTCATTAAACACAATGGTATAGGTATTACGATCCTTTAAATC
1 ATATACATTTGTATACATTTCATCTCATTAAACACAATGGTATAGGTATTACGATCCTTTAAATC
94697430 AATACCAAAGATATGCTTAATGACTTACTTGTGTTGGGTAAGATGGTTCCAACTCGGCTACTCGA
66 AATACCAAAGATATGCTTAATGACTTACTTGTGTTGGGTAAGATGGTTCCAACTCGGCTACTCGA
94697495 TGATCTTTTCTTTGCCTTTGCTCGATTCTCCTCCTTTAACTCCTTGAGCTTAATCAATAAATCAA
131 TGATCTTTTCTTTGCCTTTGCTCGATTCTCCTCCTTTAACTCCTTGAGCTTAATCAATAAATCAA
94697560 CTAGT
196 CTAGT
* *
94697565 ATATTCATTTGTATACATTTCATCTCATTAAACACAATGGTGTAGGTATTACGATCCTTT-AATC
1 ATATACATTTGTATACATTTCATCTCATTAAACACAATGGTATAGGTATTACGATCCTTTAAATC
94697629 AATACCAAAGATATGCTTAATGACTTACTTGTGTTGGGTAAGATGGTTCCAACTCGGCTACTCGA
66 AATACCAAAGATATGCTTAATGACTTACTTGTGTTGGGTAAGATGGTTCCAACTCGGCTACTCGA
94697694 TGATCTTTTCTTTGCCTTTGCTCGATTCTCCTCCTTTAACTCCTTGAGCTTAATCAATAAATCAA
131 TGATCTTTTCTTTGCCTTTGCTCGATTCTCCTCCTTTAACTCCTTGAGCTTAATCAATAAATCAA
94697759 CTAGT
196 CTAGT
94697764 TTAACCGCCT
Statistics
Matches: 197, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
199 139 0.71
200 58 0.29
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.38
Consensus pattern (200 bp):
ATATACATTTGTATACATTTCATCTCATTAAACACAATGGTATAGGTATTACGATCCTTTAAATC
AATACCAAAGATATGCTTAATGACTTACTTGTGTTGGGTAAGATGGTTCCAACTCGGCTACTCGA
TGATCTTTTCTTTGCCTTTGCTCGATTCTCCTCCTTTAACTCCTTGAGCTTAATCAATAAATCAA
CTAGT
Found at i:94699933 original size:102 final size:102
Alignment explanation
Indices: 94699757--94699960 Score: 390
Period size: 102 Copynumber: 2.0 Consensus size: 102
94699747 ATGAACCACG
*
94699757 AAACTCAAGGATGCAGCATCTCAGCATATCCTTGAGTATCTGAATTATCCGCTCGGATTGACCAT
1 AAACTCAAGGATGCAGCATCTCAGCATATCCTTAAGTATCTGAATTATCCGCTCGGATTGACCAT
94699822 CGGTTTGGGGATGAAAAGCGGTGCTAAAATGCAGCTT
66 CGGTTTGGGGATGAAAAGCGGTGCTAAAATGCAGCTT
94699859 AAACTCAAGGATGCAGCATCTCAGCATATCCTTAAGTATCTGAATTATCCGCTCGGATTGACCAT
1 AAACTCAAGGATGCAGCATCTCAGCATATCCTTAAGTATCTGAATTATCCGCTCGGATTGACCAT
*
94699924 CGGTTTGGGGGTGAAAAGCGGTGCTAAAATGCAGCTT
66 CGGTTTGGGGATGAAAAGCGGTGCTAAAATGCAGCTT
94699961 GGTACCCAAA
Statistics
Matches: 100, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
102 100 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (102 bp):
AAACTCAAGGATGCAGCATCTCAGCATATCCTTAAGTATCTGAATTATCCGCTCGGATTGACCAT
CGGTTTGGGGATGAAAAGCGGTGCTAAAATGCAGCTT
Found at i:94700983 original size:90 final size:90
Alignment explanation
Indices: 94700826--94701004 Score: 286
Period size: 90 Copynumber: 2.0 Consensus size: 90
94700816 ACTTTTGTGA
* * * * *
94700826 TCCGAAAATACATGGCACTTTTCGCCAAACAAATAATGTCGCCATATTTTCAAAGCAAATACGAT
1 TCCGAAAACACATGGCACTTCTCACCAAACAAATAATGTCGCCATATTTTCAAAGCAAACACAAT
94700891 GGCGGCTAGCTCGAGATCATGGGTT
66 GGCGGCTAGCTCGAGATCATGGGTT
*
94700916 TCCGAAAACACATGGCACTTCTCACCAAACAAATAATGTCGCCATATTTTCAATGCAAACACAAT
1 TCCGAAAACACATGGCACTTCTCACCAAACAAATAATGTCGCCATATTTTCAAAGCAAACACAAT
* *
94700981 GGCGGTTAGTTCGAGATCATGGGT
66 GGCGGCTAGCTCGAGATCATGGGT
94701005 CGGATAATTT
Statistics
Matches: 81, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
90 81 1.00
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (90 bp):
TCCGAAAACACATGGCACTTCTCACCAAACAAATAATGTCGCCATATTTTCAAAGCAAACACAAT
GGCGGCTAGCTCGAGATCATGGGTT
Found at i:94705620 original size:29 final size:29
Alignment explanation
Indices: 94705557--94705624 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
94705547 TAATCAACCG
94705557 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
94705586 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
94705615 CGCACACTTA
1 CGCACACTTA
94705625 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:94705736 original size:174 final size:174
Alignment explanation
Indices: 94705446--94705773 Score: 620
Period size: 174 Copynumber: 1.9 Consensus size: 174
94705436 AACTCAAGGT
* *
94705446 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
94705511 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
94705576 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
94705620 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
94705685 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
*
94705750 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
94705774 TGTACAATTT
Statistics
Matches: 150, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 150 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:94705765 original size:29 final size:30
Alignment explanation
Indices: 94705726--94705804 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
94705716 CTTAATAATC
94705726 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
94705756 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
94705785 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
94705805 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:94712424 original size:24 final size:24
Alignment explanation
Indices: 94712392--94712453 Score: 115
Period size: 24 Copynumber: 2.6 Consensus size: 24
94712382 GAGGCCTAGC
94712392 CCCTTTTAATAACTAGGGCAAAAG
1 CCCTTTTAATAACTAGGGCAAAAG
*
94712416 CCCTTTTAATAACTAGGGCATAAG
1 CCCTTTTAATAACTAGGGCAAAAG
94712440 CCCTTTTAATAACT
1 CCCTTTTAATAACT
94712454 TTTAATAACT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.34, C:0.23, G:0.13, T:0.31
Consensus pattern (24 bp):
CCCTTTTAATAACTAGGGCAAAAG
Found at i:94712450 original size:48 final size:47
Alignment explanation
Indices: 94712392--94712576 Score: 199
Period size: 48 Copynumber: 3.7 Consensus size: 47
94712382 GAGGCCTAGC
*
94712392 CCCTTTTAATAACTAGGGCAAAAGCCCTTTTAATAACTAGGGCATAAG
1 CCCTTTTAATAACTAGGGCATAAGCCCTTTTAATAACT-GGGCATAAG
*
94712440 CCCTTTTAATAACTTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAG
1 CCCTTTTAATAAC------T-A---GGGCATAAGCCCTTTTAATAACT-GGGCATAAG
* * *
94712498 CCCTTTTGATAACTGGGGCATAAGCCCTTTTAATAGCTGAGGCATAAG
1 CCCTTTTAATAACTAGGGCATAAGCCCTTTTAATAACTG-GGCATAAG
*
94712546 CCCTTTTGATAACTAGGGCATAAGCCCTTTT
1 CCCTTTTAATAACTAGGGCATAAGCCCTTTT
94712577 GCACTTCCTC
Statistics
Matches: 118, Mismatches: 8, Indels: 22
0.80 0.05 0.15
Matches are distributed among these distances:
47 1 0.01
48 72 0.61
52 1 0.01
54 1 0.01
55 1 0.01
58 42 0.36
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (47 bp):
CCCTTTTAATAACTAGGGCATAAGCCCTTTTAATAACTGGGCATAAG
Found at i:94712461 original size:34 final size:34
Alignment explanation
Indices: 94712418--94712487 Score: 122
Period size: 34 Copynumber: 2.1 Consensus size: 34
94712408 GGCAAAAGCC
94712418 CTTTTAATAACTAGGGCATAAGCCCTTTTAATAA
1 CTTTTAATAACTAGGGCATAAGCCCTTTTAATAA
* *
94712452 CTTTTAATAACTGGGGCATAAGCCCTTTTGATAA
1 CTTTTAATAACTAGGGCATAAGCCCTTTTAATAA
94712486 CT
1 CT
94712488 GGGGCATAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (34 bp):
CTTTTAATAACTAGGGCATAAGCCCTTTTAATAA
Found at i:94712463 original size:58 final size:58
Alignment explanation
Indices: 94712394--94712511 Score: 191
Period size: 58 Copynumber: 2.0 Consensus size: 58
94712384 GGCCTAGCCC
94712394 CTTTTAATAACTAGGGCAAAAGCCCTTTTAATAACTAGGGCATAAGCCCTTTTAATAA
1 CTTTTAATAACTAGGGCAAAAGCCCTTTTAATAACTAGGGCATAAGCCCTTTTAATAA
* * * * *
94712452 CTTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAA
1 CTTTTAATAACTAGGGCAAAAGCCCTTTTAATAACTAGGGCATAAGCCCTTTTAATAA
94712510 CT
1 CT
94712512 GGGGCATAAG
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
58 55 1.00
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.32
Consensus pattern (58 bp):
CTTTTAATAACTAGGGCAAAAGCCCTTTTAATAACTAGGGCATAAGCCCTTTTAATAA
Found at i:94712479 original size:24 final size:24
Alignment explanation
Indices: 94712452--94712577 Score: 207
Period size: 24 Copynumber: 5.2 Consensus size: 24
94712442 CTTTTAATAA
*
94712452 CTTTTAATAACTGGGGCATAAGCC
1 CTTTTGATAACTGGGGCATAAGCC
94712476 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTGATAACTGGGGCATAAGCC
94712500 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTGATAACTGGGGCATAAGCC
* * *
94712524 CTTTTAATAGCTGAGGCATAAGCC
1 CTTTTGATAACTGGGGCATAAGCC
*
94712548 CTTTTGATAACTAGGGCATAAGCC
1 CTTTTGATAACTGGGGCATAAGCC
94712572 CTTTTG
1 CTTTTG
94712578 CACTTCCTCC
Statistics
Matches: 94, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 94 1.00
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (24 bp):
CTTTTGATAACTGGGGCATAAGCC
Found at i:94712487 original size:82 final size:83
Alignment explanation
Indices: 94712375--94712532 Score: 239
Period size: 82 Copynumber: 1.9 Consensus size: 83
94712365 GCTTTATCAT
*
94712375 ATAACTGGAGGCCTAGCCCCTTTTAATAACTAGGGCAAAAGCCCTTTTAATAACTAGGGCATAAG
1 ATAACTGGAGGCATAGCCCCTTTTAATAACTAGGGCAAAAGCCCTTTTAATAACTAGGGCATAAG
94712440 CCCTTTTAATAACTTTTA
66 CCCTTTTAATAACTTTTA
* * * * *
94712458 ATAACTGG-GGCATAAG-CCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAA
1 ATAACTGGAGGCAT-AGCCCCTTTTAATAACTAGGGCAAAAGCCCTTTTAATAACTAGGGCATAA
94712521 GCCCTTTTAATA
65 GCCCTTTTAATA
94712533 GCTGAGGCAT
Statistics
Matches: 68, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
82 58 0.85
83 10 0.15
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (83 bp):
ATAACTGGAGGCATAGCCCCTTTTAATAACTAGGGCAAAAGCCCTTTTAATAACTAGGGCATAAG
CCCTTTTAATAACTTTTA
Found at i:94712651 original size:20 final size:20
Alignment explanation
Indices: 94712626--94712692 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
94712616 TTATGAATAC
94712626 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
94712646 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
94712666 GTCATGTGCGTATCATACAT
1 ATCATGTGCATATCATACAT
*
94712686 ACCATGT
1 ATCATGT
94712693 TTATCAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:94717330 original size:39 final size:40
Alignment explanation
Indices: 94717235--94717496 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
94717225 TTGAATGATG
*
94717235 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
94717273 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
94717314 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
94717353 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
94717392 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
94717431 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
94717470 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
94717497 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:94720566 original size:28 final size:30
Alignment explanation
Indices: 94720535--94720593 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 30
94720525 TAAAAGAATG
*
94720535 TGTAT-GA-TGAATCACAATTAAAGTTTCA
1 TGTATAGATTGAACCACAATTAAAGTTTCA
*
94720563 TGTATATATTTGAACCACAATTAAAGTTTCA
1 TGTATAGA-TTGAACCACAATTAAAGTTTCA
94720594 AGTGTATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 5 0.19
29 1 0.04
31 20 0.77
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.37
Consensus pattern (30 bp):
TGTATAGATTGAACCACAATTAAAGTTTCA
Found at i:94725527 original size:29 final size:28
Alignment explanation
Indices: 94725493--94725570 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
94725483 TCATGAGATT
94725493 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
94725523 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
94725550 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
94725571 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:94725788 original size:174 final size:174
Alignment explanation
Indices: 94725523--94726024 Score: 950
Period size: 174 Copynumber: 2.9 Consensus size: 174
94725513 AAATTGTACA
* * *
94725523 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* * *
94725588 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
94725653 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
94725697 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
94725762 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
94725827 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
94725871 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
94725936 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
94726001 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
94726025 ACCTTGAGTT
Statistics
Matches: 322, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 322 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Done.