Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 282 of 284
Found at i:94735152 original size:48 final size:48
Alignment explanation
Indices: 94734920--94735142 Score: 331
Period size: 48 Copynumber: 4.6 Consensus size: 48
94734910 CCTCGAGGGT
*
94734920 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATAAACG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACG
* *
94734968 CTGATGCCATGTCCCAGACATGGTCTTATACTGGCACACATATCAACG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACG
*
94735016 CCAATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACG
* * * * *
94735064 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATCTCAGATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCA-ACG
* *
94735113 CTGATG-GATGTCCCAGACATGGTCTTACAC
1 CCGATGCCATGTCCCAGACATGGTCTTACAC
94735143 GGGATCTCAT
Statistics
Matches: 159, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
48 152 0.96
49 7 0.04
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACG
Found at i:94741434 original size:16 final size:15
Alignment explanation
Indices: 94741413--94741463 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 15
94741403 ACAACCCACA
94741413 TTTCGGCTTTTTACCT
1 TTTCGGCTTTTT-CCT
*
94741429 TTTCGGCTTTTTGGCT
1 TTTCGGCTTTTT-CCT
*
94741445 TTTCAGCCTTTTTCCT
1 TTTC-GGCTTTTTCCT
94741461 TTT
1 TTT
94741464 ACATCTAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
16 23 0.77
17 7 0.23
ACGTcount: A:0.04, C:0.24, G:0.14, T:0.59
Consensus pattern (15 bp):
TTTCGGCTTTTTCCT
Found at i:94748575 original size:34 final size:34
Alignment explanation
Indices: 94748537--94748605 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
94748527 GGCCACTACA
94748537 ACTAAAGTGGGAAATTTGACATGCAAATCCACTT
1 ACTAAAGTGGGAAATTTGACATGCAAATCCACTT
94748571 ACTAAAGTGGGAAATTTGACATGCAAATCCACTT
1 ACTAAAGTGGGAAATTTGACATGCAAATCCACTT
94748605 A
1 A
94748606 TTTACACCAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.26
Consensus pattern (34 bp):
ACTAAAGTGGGAAATTTGACATGCAAATCCACTT
Found at i:94749229 original size:12 final size:14
Alignment explanation
Indices: 94749212--94749243 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
94749202 GTAAGAACAC
94749212 ATGTGTA-G-TACT
1 ATGTGTAGGCTACT
94749224 ATGTGTAGGCTACT
1 ATGTGTAGGCTACT
94749238 ATGTGT
1 ATGTGT
94749244 TTAAGACGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.39
13 1 0.06
14 10 0.56
ACGTcount: A:0.22, C:0.09, G:0.28, T:0.41
Consensus pattern (14 bp):
ATGTGTAGGCTACT
Found at i:94749328 original size:51 final size:50
Alignment explanation
Indices: 94749255--94749391 Score: 184
Period size: 51 Copynumber: 2.7 Consensus size: 50
94749245 TAAGACGATT
* * *
94749255 TTAGGTCATGTGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGATAGC
1 TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTAAGCATACCCGAT-GC
* ** * *
94749306 TTCGATCACGTGTGTAGTACTAAGTGCAGGCTACTAAGTGTATCCGATGG
1 TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTAAGCATACCCGATGC
*
94749356 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
1 TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTA
94749392 CATGTACTAG
Statistics
Matches: 76, Mismatches: 10, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
50 35 0.46
51 41 0.54
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (50 bp):
TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTAAGCATACCCGATGC
Found at i:94749386 original size:50 final size:49
Alignment explanation
Indices: 94749255--94749441 Score: 205
Period size: 50 Copynumber: 3.7 Consensus size: 49
94749245 TAAGACGATT
* * ** *
94749255 TTAGGTCATGTGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGATAGC
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTAAGTGTA-CCGAT-GG
* *
94749306 TTCGATCACGTGTGTAGTACTAAGTGCAGGCTACTAAGTGTATCCGATGG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTAAGTGTA-CCGATGG
* *
94749356 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACA-TGTACTAGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA-AGTGTAC-CGATGG
* * * *
94749406 TTAGGTCGCATGTGTAGTACTAACTACAGGCTACTA
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
94749442 TGCGTACCAG
Statistics
Matches: 118, Mismatches: 16, Indels: 5
0.85 0.12 0.04
Matches are distributed among these distances:
49 1 0.01
50 75 0.64
51 42 0.36
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (49 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTAAGTGTACCGATGG
Found at i:94751202 original size:20 final size:20
Alignment explanation
Indices: 94751177--94751219 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
94751167 GACACGAGCA
94751177 TGTCCCAAGCCACATGGGCG
1 TGTCCCAAGCCACATGGGCG
94751197 TGTCCCAAGCCACATGGGCG
1 TGTCCCAAGCCACATGGGCG
94751217 TGT
1 TGT
94751220 GTGACCACAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.19, C:0.33, G:0.30, T:0.19
Consensus pattern (20 bp):
TGTCCCAAGCCACATGGGCG
Found at i:94754042 original size:31 final size:31
Alignment explanation
Indices: 94754004--94754113 Score: 193
Period size: 31 Copynumber: 3.5 Consensus size: 31
94753994 TTTAACAGTT
94754004 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
94754035 ACTGGGCCGAAGCCTTATCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
94754066 TCTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
94754097 ACTGGGCCAAAGCCTTT
1 ACTGGGCCGAAGCCTTT
94754114 ACTGTAAACG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 74 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:94754346 original size:24 final size:24
Alignment explanation
Indices: 94754319--94754426 Score: 101
Period size: 25 Copynumber: 4.4 Consensus size: 24
94754309 CTGGAGGCTT
94754319 AGCCTCTTTTAAT-AACTGAGGCAA
1 AGCC-CTTTTAATAAACTGAGGCAA
* *
94754343 AGCCCTTTTGATAAACTGGGGCAA
1 AGCCCTTTTAATAAACTGAGGCAA
** *
94754367 AGCCCTTTTCGGTAAACTGGGGCAA
1 AGCCCTTTT-AATAAACTGAGGCAA
** * *
94754392 AGCCCTTTTCGGTAAACTGGGGCAT
1 AGCCCTTTT-AATAAACTGAGGCAA
94754417 AGCCCTTTTA
1 AGCCCTTTTA
94754427 GCACTTCCTC
Statistics
Matches: 77, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
23 7 0.09
24 23 0.30
25 47 0.61
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTGAGGCAA
Found at i:94754388 original size:25 final size:25
Alignment explanation
Indices: 94754332--94754425 Score: 154
Period size: 25 Copynumber: 3.8 Consensus size: 25
94754322 CTCTTTTAAT
* *
94754332 AACTGAGGCAAAGCCCTTTT-GATA
1 AACTGGGGCAAAGCCCTTTTCGGTA
94754356 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
94754381 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
94754406 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
94754426 AGCACTTCCT
Statistics
Matches: 66, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
24 19 0.29
25 47 0.71
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:94755268 original size:27 final size:27
Alignment explanation
Indices: 94755233--94755316 Score: 98
Period size: 27 Copynumber: 3.1 Consensus size: 27
94755223 GGGCATATTC
* * * *
94755233 GTCATTTTACCATACAGGGG-TATTATG
1 GTCACTTTACCCTACAGGGGCT-TGACG
94755260 GTCACTTTACCCTACAGGGGCTTGACG
1 GTCACTTTACCCTACAGGGGCTTGACG
* *
94755287 GTCACTTTACCCTACAGAGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTGACG
94755314 GTC
1 GTC
94755317 TTTTTACCTA
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
27 49 0.98
28 1 0.02
ACGTcount: A:0.21, C:0.25, G:0.23, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTGACG
Found at i:94755448 original size:29 final size:28
Alignment explanation
Indices: 94755378--94755458 Score: 85
Period size: 29 Copynumber: 2.9 Consensus size: 28
94755368 GTGAATCTAC
* *
94755378 AAACAAAGGGTATTTC-AGTAA-TTTTAT
1 AAACCAAGGGTATTTCTA-TAATTTTTAG
*
94755405 AAACCAATGGTATTTCTATAATTTTTAG
1 AAACCAAGGGTATTTCTATAATTTTTAG
* *
94755433 AAAGTCAAGGGTATTTCTGTAATTTT
1 AAA-CCAAGGGTATTTCTATAATTTT
94755459 GTAAATTAAG
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
27 17 0.38
28 9 0.20
29 19 0.42
ACGTcount: A:0.36, C:0.09, G:0.15, T:0.41
Consensus pattern (28 bp):
AAACCAAGGGTATTTCTATAATTTTTAG
Found at i:94755687 original size:27 final size:27
Alignment explanation
Indices: 94755355--94755673 Score: 245
Period size: 27 Copynumber: 11.8 Consensus size: 27
94755345 TTTCACCCTA
* *
94755355 CAAGGGTGTTTTGGTGAA-TCTACAAA-
1 CAAGGGTATTTTGGT-AATTTTACAAAT
** * *
94755381 CAAAGGGTATTTCAGTAATTTTATAAAC
1 C-AAGGGTATTTTGGTAATTTTACAAAT
* * *
94755409 CAATGGTATTTCT-ATAATTTTTAGAAAGT
1 CAAGGGTATTT-TGGTAA-TTTTACAAA-T
**
94755438 CAAGGGTATTTCT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAT
*
94755465 TAAGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
** * *
94755492 TGAGGGTATTTCGGTAATTTCACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
94755518 CCAGTAGTATTTTGGTAATTTTGCAAAT
1 CAAG-GGTATTTTGGTAATTTTACAAAT
* * *
94755546 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * * *
94755573 CAGGGGTATTTTAGCAATTTTACAGA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
94755599 CCAGGGTATTTTGGTAATTTTACTAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
94755626 CAAGAGTATTTTGGTAATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
94755653 CAAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTTGGTAATTTT
94755674 GTAAATTGAG
Statistics
Matches: 234, Mismatches: 49, Indels: 19
0.77 0.16 0.06
Matches are distributed among these distances:
26 26 0.11
27 176 0.75
28 17 0.07
29 15 0.06
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:94755695 original size:27 final size:27
Alignment explanation
Indices: 94755665--94755768 Score: 136
Period size: 27 Copynumber: 3.9 Consensus size: 27
94755655 AGGGTATTTT
* *
94755665 AGTAATTTTGTAAATTGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
94755692 AGTAATTCTGTAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
94755719 AGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
94755746 GGTAATTATGTAAATCGGGGGTA
1 AGTAATTCTGTAAATCGAGGGTA
94755769 CTTTAGTAAT
Statistics
Matches: 66, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 66 1.00
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:94755697 original size:54 final size:54
Alignment explanation
Indices: 94755639--94755795 Score: 170
Period size: 54 Copynumber: 2.9 Consensus size: 54
94755629 GAGTATTTTG
* * * * * *
94755639 GTAATTTTATAAACCAAGGGTATTTTAGTAATTTTGTAAATTGAGGGTAAAACA
1 GTAATTATGTAAATCAAGGGTAATTTAGTAATTTTATAAATCGAGGGTAAAACA
* ** * *
94755693 GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTATGTAAATCAAGGGTAATTTAGTAATTTTATAAATCGAGGGTAAAACA
** * * *
94755747 GTAATTATGTAAATCGGGGGTACTTTAGTAATTTTACAAGTCGAGGGTA
1 GTAATTATGTAAATCAAGGGTAATTTAGTAATTTTATAAATCGAGGGTA
94755796 TTTCAATAAT
Statistics
Matches: 84, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 84 1.00
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.33
Consensus pattern (54 bp):
GTAATTATGTAAATCAAGGGTAATTTAGTAATTTTATAAATCGAGGGTAAAACA
Found at i:94755714 original size:134 final size:134
Alignment explanation
Indices: 94755467--94755714 Score: 284
Period size: 134 Copynumber: 1.9 Consensus size: 134
94755457 TTGTAAATTA
** * *
94755467 AGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTAGTATTTTG
1 AGGGTATTTTGGTAATTTTACAAATCAAGAGTATTTCGGTAATTTCACAAACCAGTAGTATTTTA
***** * *
94755532 GTAATTTTGCAAATTAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGCAATTTTACA
66 GTAATTTTGCAAATTAGGGGTAAAACAGTAATTCTACAAACCAAGGGTATTTTAGCAATTTTACA
94755597 GACC
131 GACC
* * * * *
94755601 AGGGTATTTTGGTAATTTTACTAATCAAGAGTATTTTGGTAATTTTATAAACCAAG-GGTATTTT
1 AGGGTATTTTGGTAATTTTACAAATCAAGAGTATTTCGGTAATTTCACAAACC-AGTAGTATTTT
* ** *
94755665 AGTAATTTTGTAAATT-GAGGGTAAAACAGTAATTCTGTAAATCAAGGGTA
65 AGTAATTTTGCAAATTAG-GGGTAAAACAGTAATTCTACAAACCAAGGGTA
94755715 AAATAGTAAT
Statistics
Matches: 92, Mismatches: 20, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
133 1 0.01
134 89 0.97
135 2 0.02
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (134 bp):
AGGGTATTTTGGTAATTTTACAAATCAAGAGTATTTCGGTAATTTCACAAACCAGTAGTATTTTA
GTAATTTTGCAAATTAGGGGTAAAACAGTAATTCTACAAACCAAGGGTATTTTAGCAATTTTACA
GACC
Found at i:94758734 original size:39 final size:40
Alignment explanation
Indices: 94758629--94758832 Score: 245
Period size: 40 Copynumber: 5.1 Consensus size: 40
94758619 TATTCGAATG
* * *
94758629 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACT
* *
94758670 ATATCCGGACTAACAT-CCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAA-GTCCCGAAGGCATTTGTGCGAGTTACT
*
94758710 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACT
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
94758749 AAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
94758789 ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
94758829 ATAT
1 ATAT
94758833 TCGGTTAAAT
Statistics
Matches: 141, Mismatches: 16, Indels: 13
0.83 0.09 0.08
Matches are distributed among these distances:
39 37 0.26
40 76 0.54
41 27 0.19
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:94758769 original size:79 final size:80
Alignment explanation
Indices: 94758629--94758824 Score: 245
Period size: 79 Copynumber: 2.5 Consensus size: 80
94758619 TATTCGAATG
* * *
94758629 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATATCCGGACTAACATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACTAAATCCGGACTAACATCCGAAGGC
94758694 ATTTGTGCGAGTTACT
65 ATTTGTGCGAGTTACT
* * ** *
94758710 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAA-GTCCCGAAGG
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAATCCGGACTAACAT-CCGAAGG
94758772 CATTTGTGCGAGTTACT
64 CATTTGTGCGAGTTACT
* * *
94758789 ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
94758825 AGCTATATTC
Statistics
Matches: 99, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
78 1 0.01
79 50 0.51
80 36 0.36
81 12 0.12
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAATCCGGACTAACATCCGAAGGCA
TTTGTGCGAGTTACT
Found at i:94758839 original size:79 final size:79
Alignment explanation
Indices: 94758633--94758850 Score: 210
Period size: 79 Copynumber: 2.7 Consensus size: 79
94758623 CGAATGATAT
* * * * * * **
94758633 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATATCCGGACTAACAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTGGAGC-GAGTTACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
94758697 TGTGCGAGTTACTAATT
63 TGTGCGAGTTACTAATA
* *
94758714 CCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTGGAGCGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
94758779 GCGAGTTACT-ATAA
66 GCGAGTTACTAAT-A
* * * * *
94758793 CCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCTATATTC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTGGAGCGAGTTA-CTAAATCCGGGTTAAATCCCGAAGG
94758851 TATGTGATTC
Statistics
Matches: 117, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
78 3 0.03
79 65 0.56
80 39 0.33
81 10 0.09
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTGGAGCGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGTTACTAATA
Found at i:94765992 original size:39 final size:40
Alignment explanation
Indices: 94765887--94766090 Score: 245
Period size: 40 Copynumber: 5.1 Consensus size: 40
94765877 TATTCGAATG
* * *
94765887 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACT
* *
94765928 ATATCCGGACTAACAT-CCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAA-GTCCCGAAGGCATTTGTGCGAGTTACT
*
94765968 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACT
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
94766007 AAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
94766047 ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
94766087 ATAT
1 ATAT
94766091 TCGGTTAAAT
Statistics
Matches: 141, Mismatches: 16, Indels: 13
0.83 0.09 0.08
Matches are distributed among these distances:
39 37 0.26
40 76 0.54
41 27 0.19
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:94766027 original size:79 final size:80
Alignment explanation
Indices: 94765887--94766082 Score: 245
Period size: 79 Copynumber: 2.5 Consensus size: 80
94765877 TATTCGAATG
* * *
94765887 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATATCCGGACTAACATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACTAAATCCGGACTAACATCCGAAGGC
94765952 ATTTGTGCGAGTTACT
65 ATTTGTGCGAGTTACT
* * ** *
94765968 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAA-GTCCCGAAGG
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAATCCGGACTAACAT-CCGAAGG
94766030 CATTTGTGCGAGTTACT
64 CATTTGTGCGAGTTACT
* * *
94766047 ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
94766083 AGCTATATTC
Statistics
Matches: 99, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
78 1 0.01
79 50 0.51
80 36 0.36
81 12 0.12
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAATCCGGACTAACATCCGAAGGCA
TTTGTGCGAGTTACT
Found at i:94766097 original size:79 final size:79
Alignment explanation
Indices: 94765891--94766108 Score: 210
Period size: 79 Copynumber: 2.7 Consensus size: 79
94765881 CGAATGATAT
* * * * * * **
94765891 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATATCCGGACTAACAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTGGAGC-GAGTTACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
94765955 TGTGCGAGTTACTAATT
63 TGTGCGAGTTACTAATA
* *
94765972 CCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTGGAGCGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
94766037 GCGAGTTACT-ATAA
66 GCGAGTTACTAAT-A
* * * * *
94766051 CCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCTATATTC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTGGAGCGAGTTA-CTAAATCCGGGTTAAATCCCGAAGG
94766109 TATGTGATTC
Statistics
Matches: 117, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
78 3 0.03
79 65 0.56
80 39 0.33
81 10 0.09
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTGGAGCGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGTTACTAATA
Found at i:94773245 original size:39 final size:40
Alignment explanation
Indices: 94773140--94773347 Score: 244
Period size: 40 Copynumber: 5.2 Consensus size: 40
94773130 TATTCGAATG
* * *
94773140 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACT
* *
94773181 ATATCCGGACTAACAT-CCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAA-GTCCCGAAGGCATTTGTGCGAGTTACT
*
94773221 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACT
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
94773260 AAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * **
94773300 ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
94773340 ATATCCGG
1 ATATCCGG
94773348 TTAAATTCCG
Statistics
Matches: 144, Mismatches: 17, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
39 37 0.26
40 79 0.55
41 27 0.19
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:94773280 original size:79 final size:81
Alignment explanation
Indices: 94773140--94773326 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 81
94773130 TATTCGAATG
* * *
94773140 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATATCCGGACTAACATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAACATCCGAAGGC
94773205 ATTTGTGCGAGTTACT
66 ATTTGTGCGAGTTACT
* * ** *
94773221 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAA-GTCCCGAAG
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAACAT-CCGAAG
94773282 GCATTTGTGCGAGTTACT
64 GCATTTGTGCGAGTTACT
* *
94773300 ATAACCGGGCTATGTCCCGAAGGCATT
1 ATATCCGGGCTAAGTCCCGAAGGCATT
94773327 TGAACGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
78 1 0.01
79 50 0.54
80 29 0.32
81 12 0.13
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAACATCCGAAGGC
ATTTGTGCGAGTTACT
Found at i:94773350 original size:79 final size:79
Alignment explanation
Indices: 94773197--94773361 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
94773187 GGACTAACAT
* **
94773197 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
94773262 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
94773276 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
94773339 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
94773355 CCGAAGG
1 CCGAAGG
94773362 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:94776283 original size:40 final size:40
Alignment explanation
Indices: 94776228--94776322 Score: 165
Period size: 40 Copynumber: 2.4 Consensus size: 40
94776218 TAACAACCAG
94776228 CACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCCA
1 CACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCCA
*
94776268 CACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCCG
1 CACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCCA
94776308 CAC-AATTGCCTTCGG
1 CACGAA-TGCCTTCGG
94776323 ATCTTAGTCC
Statistics
Matches: 53, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
39 2 0.04
40 51 0.96
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (40 bp):
CACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCCA
Found at i:94780643 original size:55 final size:53
Alignment explanation
Indices: 94780502--94780694 Score: 183
Period size: 55 Copynumber: 3.6 Consensus size: 53
94780492 TTACCATTGT
*
94780502 CATGTCTTGACATGGTCTTACATGGTATCCTTG-CTTATGAACTCACCATTGC
1 CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGC
* * * ** * *
94780554 CAT-TCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAGTAGTTTATCAATGC
1 CATGT-CTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G-AACTCACCAATGC
* * * * * *
94780609 CATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAAAACTTACCAATGT
1 CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAACTCACCAATGC
* * *
94780663 CATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 CATGTCTTGACATGGTCTTACATGGTATCCTT
94780695 AAATCCTAAT
Statistics
Matches: 112, Mismatches: 24, Indels: 8
0.78 0.17 0.06
Matches are distributed among these distances:
51 1 0.01
52 28 0.25
53 5 0.04
54 37 0.33
55 40 0.36
56 1 0.01
ACGTcount: A:0.20, C:0.23, G:0.18, T:0.39
Consensus pattern (53 bp):
CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGC
Found at i:94791597 original size:52 final size:52
Alignment explanation
Indices: 94791519--94791619 Score: 193
Period size: 52 Copynumber: 1.9 Consensus size: 52
94791509 CAAACGGGCA
*
94791519 TTTTCCTCAATCACACATCTTTGCCGTCTTCCACGGAATATCGAAATCGACG
1 TTTTCCTCAATCACACATCTTTGCCGTCTTCCACAGAATATCGAAATCGACG
94791571 TTTTCCTCAATCACACATCTTTGCCGTCTTCCACAGAATATCGAAATCG
1 TTTTCCTCAATCACACATCTTTGCCGTCTTCCACAGAATATCGAAATCG
94791620 GTACTTCGGT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 48 1.00
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.32
Consensus pattern (52 bp):
TTTTCCTCAATCACACATCTTTGCCGTCTTCCACAGAATATCGAAATCGACG
Found at i:94791967 original size:30 final size:30
Alignment explanation
Indices: 94791933--94791992 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
94791923 ATTTAATACG
94791933 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
94791963 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
94791993 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:94797639 original size:399 final size:399
Alignment explanation
Indices: 94796901--94797701 Score: 1593
Period size: 399 Copynumber: 2.0 Consensus size: 399
94796891 ATTACCTTGC
94796901 TTCAGCTCAAGAAACTCTTTACATTTCTGATCAATAAATCTTTCACTAATATATTTCTTCCAAAA
1 TTCAGCTCAAGAAACTCTTTACATTTCTGATCAATAAATCTTTCACTAATATATTTCTTCCAAAA
94796966 CTCTTCTTGAAAGAATTCCCAGGTTACCCTCTCTTTCGGTACCACCGAAATCAAAGTCTTCCACC
66 CTCTTCTTGAAAGAATTCCCAGGTTACCCTCTCTTTCGGTACCACCGAAATCAAAGTCTTCCACC
94797031 AATTATAGGCTGAATCTCTCAACAAAGATGTAGCACATTTCAAACATTCTTCAGGTGTACAAGAT
131 AATTATAGGCTGAATCTCTCAACAAAGATGTAGCACATTTCAAACATTCTTCAGGTGTACAAGAT
94797096 AATTCATCAAATACCCGGATAGAATTTTCAAGTCAGAACTCTGCTTTCTCTGCATCATCATCAAT
196 AATTCATCAAATACCCGGATAGAATTTTCAAGTCAGAACTCTGCTTTCTCTGCATCATCATCAAT
94797161 ATTTGCTCTAAATTCTTCAGCCCCTTGTTTACGAATTCTATCAACGGGGGTTCTATGAAATTTTA
261 ATTTGCTCTAAATTCTTCAGCCCCTTGTTTACGAATTCTATCAACGGGGGTTCTATGAAATTTTA
*
94797226 TCATCTCCACTCCTTGAGGCATTGGAGGCATAGGTTGAGGAATTGGGGGAGGTGGGGGAGGTCGT
326 TCATATCCACTCCTTGAGGCATTGGAGGCATAGGTTGAGGAATTGGGGGAGGTGGGGGAGGTCGT
94797291 ACATTTGGG
391 ACATTTGGG
94797300 TTCAGCTCAAGAAACTCTTTACATTTCTGATCAATAAATCTTTCACTAATATATTTCTTCCAAAA
1 TTCAGCTCAAGAAACTCTTTACATTTCTGATCAATAAATCTTTCACTAATATATTTCTTCCAAAA
94797365 CTCTTCTTGAAAGAATTCCCAGGTTACCCTCTCTTTCGGTACCACCGAAATCAAAGTCTTCCACC
66 CTCTTCTTGAAAGAATTCCCAGGTTACCCTCTCTTTCGGTACCACCGAAATCAAAGTCTTCCACC
94797430 AATTATAGGCTGAATCTCTCAACAAAGATGTAGCACATTTCAAACATTCTTCAGGTGTACAAGAT
131 AATTATAGGCTGAATCTCTCAACAAAGATGTAGCACATTTCAAACATTCTTCAGGTGTACAAGAT
94797495 AATTCATCAAATACCCGGATAGAATTTTCAAGTCAGAACTCTGCTTTCTCTGCATCATCATCAAT
196 AATTCATCAAATACCCGGATAGAATTTTCAAGTCAGAACTCTGCTTTCTCTGCATCATCATCAAT
94797560 ATTTGCTCTAAATTCTTCAGCCCCTTGTTTACGAATTCTATCAACGGGGGTTCTATGAAATTTTA
261 ATTTGCTCTAAATTCTTCAGCCCCTTGTTTACGAATTCTATCAACGGGGGTTCTATGAAATTTTA
94797625 TCATATCCACTCCTTGAGGCATTGGAGGCATAGGTTGAGGAATTGGGGGAGGTGGGGGAGGTCGT
326 TCATATCCACTCCTTGAGGCATTGGAGGCATAGGTTGAGGAATTGGGGGAGGTGGGGGAGGTCGT
94797690 ACATTTGGG
391 ACATTTGGG
94797699 TTC
1 TTC
94797702 GTACGAACGA
Statistics
Matches: 401, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
399 401 1.00
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (399 bp):
TTCAGCTCAAGAAACTCTTTACATTTCTGATCAATAAATCTTTCACTAATATATTTCTTCCAAAA
CTCTTCTTGAAAGAATTCCCAGGTTACCCTCTCTTTCGGTACCACCGAAATCAAAGTCTTCCACC
AATTATAGGCTGAATCTCTCAACAAAGATGTAGCACATTTCAAACATTCTTCAGGTGTACAAGAT
AATTCATCAAATACCCGGATAGAATTTTCAAGTCAGAACTCTGCTTTCTCTGCATCATCATCAAT
ATTTGCTCTAAATTCTTCAGCCCCTTGTTTACGAATTCTATCAACGGGGGTTCTATGAAATTTTA
TCATATCCACTCCTTGAGGCATTGGAGGCATAGGTTGAGGAATTGGGGGAGGTGGGGGAGGTCGT
ACATTTGGG
Found at i:94799436 original size:46 final size:46
Alignment explanation
Indices: 94799386--94799543 Score: 198
Period size: 46 Copynumber: 3.4 Consensus size: 46
94799376 TTCACGAATT
94799386 GGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTC
1 GGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTC
* * * * * *
94799432 GGACTCAACTCAACGAGTTCGGATGC-CTAGC-TACATTTCA-CGAA-TC
1 GGACTCAACTCAACGAGTTCAGA--CATTCGCATCCA--TAAGTGAACTC
94799478 GGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTC
1 GGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTC
94799524 GGACTCAACTCAACGAGTTC
1 GGACTCAACTCAACGAGTTC
94799544 GGATGCTCAA
Statistics
Matches: 92, Mismatches: 12, Indels: 16
0.77 0.10 0.13
Matches are distributed among these distances:
44 3 0.03
45 6 0.07
46 74 0.80
47 6 0.07
48 3 0.03
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.22
Consensus pattern (46 bp):
GGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTC
Found at i:94799438 original size:92 final size:92
Alignment explanation
Indices: 94799326--94799549 Score: 439
Period size: 92 Copynumber: 2.4 Consensus size: 92
94799316 TGTAACCCGC
*
94799326 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGCTACATTTCACGAATTGGACT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGCTACATTTCACGAATCGGACT
94799391 CAACTCAACGAGTTCAGACATTCGCAT
66 CAACTCAACGAGTTCAGACATTCGCAT
94799418 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGCTACATTTCACGAATCGGACT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGCTACATTTCACGAATCGGACT
94799483 CAACTCAACGAGTTCAGACATTCGCAT
66 CAACTCAACGAGTTCAGACATTCGCAT
94799510 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
94799550 TCAACCATCC
Statistics
Matches: 131, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
92 131 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (92 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGCTACATTTCACGAATCGGACT
CAACTCAACGAGTTCAGACATTCGCAT
Found at i:94799565 original size:46 final size:43
Alignment explanation
Indices: 94799326--94799549 Score: 168
Period size: 46 Copynumber: 4.9 Consensus size: 43
94799316 TGTAACCCGC
*
94799326 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG
1 CCATTAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-AG
* * * * *
94799370 CTACATTTCA-CGAA-TTGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 C--CA-TT-AGTGAACTCGGACTCAACTCAACGAGTTC-G-GATGC-CAG
*
94799418 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG
1 CCATTAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-AG
* * * *
94799462 CTACATTTCA-CGAA-TCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 C--CA-TT-AGTGAACTCGGACTCAACTCAACGAGTTC-G-GATGC-CAG
*
94799510 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATTAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
94799550 TCAACCATCC
Statistics
Matches: 140, Mismatches: 21, Indels: 38
0.70 0.11 0.19
Matches are distributed among these distances:
43 1 0.01
44 11 0.08
45 10 0.07
46 94 0.67
47 10 0.07
48 12 0.09
49 2 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (43 bp):
CCATTAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAG
Found at i:94800006 original size:30 final size:30
Alignment explanation
Indices: 94799972--94800031 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
94799962 ATTTAATACG
**
94799972 AACTTTGGGAAAATTACACTTTTGCCCCTA
1 AACTTTGACAAAATTACACTTTTGCCCCTA
* *
94800002 AACTTTTACATAATTACACTTTTGCCCCTA
1 AACTTTGACAAAATTACACTTTTGCCCCTA
94800032 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGACAAAATTACACTTTTGCCCCTA
Found at i:94804344 original size:44 final size:41
Alignment explanation
Indices: 94804265--94804418 Score: 123
Period size: 40 Copynumber: 3.7 Consensus size: 41
94804255 TTCTGGTATA
* * ** *
94804265 TGATTTTGTGTAAGACCACGTCTGGGATGTTGACAT-TGATT
1 TGATTTCGTGTAAGACCATGTCTGGGACATCGACATAT-ATT
*
94804306 TGAGATTTACGTGTAAGACCATGTCTGAGACATCGACATCATATT
1 T--GATTT-CGTGTAAGACCATGTCTGGGACATCGACAT-ATATT
* ** * *
94804351 TGATTTCGTGTAAGACCCTGTCTGGGACAAAGGC-CATATT
1 TGATTTCGTGTAAGACCATGTCTGGGACATCGACATATATT
* * *
94804391 TGATTACATGTAAGACCACGTCTGGGAC
1 TGATTTCGTGTAAGACCATGTCTGGGAC
94804419 GTTGGCATTG
Statistics
Matches: 92, Mismatches: 16, Indels: 11
0.77 0.13 0.09
Matches are distributed among these distances:
40 29 0.32
41 1 0.01
42 23 0.25
43 10 0.11
44 24 0.26
45 4 0.04
46 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.32
Consensus pattern (41 bp):
TGATTTCGTGTAAGACCATGTCTGGGACATCGACATATATT
Found at i:94806291 original size:41 final size:41
Alignment explanation
Indices: 94806234--94806317 Score: 141
Period size: 41 Copynumber: 2.0 Consensus size: 41
94806224 ATTAGGACTC
94806234 GGATTCGATTATCGGAGGAGCTCTCGAAAAAATGATTACTT
1 GGATTCGATTATCGGAGGAGCTCTCGAAAAAATGATTACTT
* * *
94806275 GGATTTGATTATCGGAGGAGCTCTCGGAAAAATGATTTCTT
1 GGATTCGATTATCGGAGGAGCTCTCGAAAAAATGATTACTT
94806316 GG
1 GG
94806318 CTATGGATTT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (41 bp):
GGATTCGATTATCGGAGGAGCTCTCGAAAAAATGATTACTT
Found at i:94817129 original size:79 final size:82
Alignment explanation
Indices: 94817018--94817202 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
94817008 GCTACTCGTT
* *
94817018 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
94817081 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
94817098 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
94817161 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
94817178 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
94817203 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:94817202 original size:40 final size:40
Alignment explanation
Indices: 94816999--94817202 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
94816989 CGGAATTTAA
** *
94816999 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
94817039 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
94817079 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
94817118 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
94817158 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
94817198 CCGGA
1 CCGGA
94817203 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:94825208 original size:28 final size:27
Alignment explanation
Indices: 94825147--94825243 Score: 140
Period size: 27 Copynumber: 3.6 Consensus size: 27
94825137 TTATTAAGTC
* *
94825147 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
94825174 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
94825202 CGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
94825229 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
94825244 GCACAATTTA
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 38 0.59
28 26 0.41
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:94835645 original size:49 final size:49
Alignment explanation
Indices: 94835573--94835766 Score: 194
Period size: 49 Copynumber: 3.9 Consensus size: 49
94835563 GCCGAAGCTA
**
94835573 TCTGGTATGCGTAGTAGCCTACACTTAGTACTACACATGCGACCAACAG
1 TCTGGTACACGTAGTAGCCTACACTTAGTACTACACATGCGACCAACAG
* *
94835622 TCTGGTACACGTAGTAGCCTACACTTAGTACTACACATGTGACCTCACCA-
1 TCTGGTACACGTAGTAGCCTACACTTAGTACTACACATGCGA-C-CAACAG
** * * * * *
94835672 TCTAATACACGTTGTAGCCTTCACTTAGTACTACACACGTGATC-ACAG
1 TCTGGTACACGTAGTAGCCTACACTTAGTACTACACATGCGACCAACAG
* * * *
94835720 TTTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 ---TCTGGTACACGTAGTAGCCTACACTTAGTACTACACATGCGACC
94835767 TCACAATAGA
Statistics
Matches: 118, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
47 2 0.02
48 1 0.01
49 39 0.33
50 38 0.32
51 38 0.32
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (49 bp):
TCTGGTACACGTAGTAGCCTACACTTAGTACTACACATGCGACCAACAG
Found at i:94835702 original size:50 final size:49
Alignment explanation
Indices: 94835582--94835766 Score: 176
Period size: 50 Copynumber: 3.7 Consensus size: 49
94835572 ATCTGGTATG
* **
94835582 CGTAGTAGCCTACACTTAGTACTACACATGCGACCAACAGTCTGGTACA
1 CGTAGTAGCCTACACTTAGTACTACACATGTGACCAACAGTCTAATACA
*
94835631 CGTAGTAGCCTACACTTAGTACTACACATGTGACCTCACCA-TCTAATACA
1 CGTAGTAGCCTACACTTAGTACTACACATGTGA-C-CAACAGTCTAATACA
* * * * *** *
94835681 CGTTGTAGCCTTCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACG
1 CGTAGTAGCCTACACTTAGTACTACACATGTGACCAACAG---TCTAATACA
* * *
94835732 CATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 CGTAGTAGCCTACACTTAGTACTACACATGTGACC
94835767 TCACAATAGA
Statistics
Matches: 111, Mismatches: 19, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
47 2 0.02
48 1 0.01
49 32 0.29
50 38 0.34
51 38 0.34
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (49 bp):
CGTAGTAGCCTACACTTAGTACTACACATGTGACCAACAGTCTAATACA
Found at i:94835759 original size:101 final size:99
Alignment explanation
Indices: 94835586--94835770 Score: 255
Period size: 101 Copynumber: 1.8 Consensus size: 99
94835576 GGTATGCGTA
* * *
94835586 GTAGCCTACACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCCTACACTTAGT
1 GTAGCCTACACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTACACTTAGT
*
94835651 ACTACACATGTGACCTCACCATCTAATACACGTT
66 ACTACACATGCGACCTCACCATCTAATACACGTT
* * * * *
94835685 GTAGCCTTCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCATAGTAGCCTGCACTT
1 GTAGCCTACACTTAGTACTACACACGCGACCAACAG---TCGGGTACACATAGTAGCCTACACTT
94835749 AGTACTACACATGCGACCTCAC
63 AGTACTACACATGCGACCTCAC
94835771 AATAGATCAT
Statistics
Matches: 74, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
98 4 0.05
99 27 0.36
101 43 0.58
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (99 bp):
GTAGCCTACACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTACACTTAGT
ACTACACATGCGACCTCACCATCTAATACACGTT
Found at i:94838040 original size:47 final size:46
Alignment explanation
Indices: 94837966--94838231 Score: 243
Period size: 47 Copynumber: 5.7 Consensus size: 46
94837956 TGGGTAAGGT
*
94837966 GCCGATGCCATGTCCCAGACACAGTCTTACACTGGCTCACATCTCAA
1 GCCGATGCCATGTCCCAGACA-TGTCTTACACTGGCTCACATCTCAA
** *
94838013 GTTGATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCATCTCATA
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCA-CATCTCA-A
* * * * *
94838061 GCCGATG-TATGTCCCAAACATGTCTTACACTGGCTTACTTCTCGAG
1 GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTCACATCTC-AA
* * * * * *
94838107 GCCGATG-CATGTGCTAGACATGTCTTACATTAGCCCTCATCTCAA
1 GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTCACATCTCAA
* * * ***
94838152 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG
1 -GCCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCACAT-CTCAA
94838201 GCCGATG-CATGTCCCAGACATGTCTTACACT
1 GCCGATGCCATGTCCCAGACATGTCTTACACT
94838232 AGCTTACCCA
Statistics
Matches: 177, Mismatches: 33, Indels: 19
0.77 0.14 0.08
Matches are distributed among these distances:
45 1 0.01
46 68 0.38
47 79 0.45
48 28 0.16
49 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (46 bp):
GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTCACATCTCAA
Found at i:94840923 original size:34 final size:34
Alignment explanation
Indices: 94840879--94840943 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 34
94840869 CAGTAACAGT
*
94840879 TCAATTTCAGT-TAGGGCCATAGCCCATTACAATA
1 TCAATATCAGTGT-GGGCCATAGCCCATTACAATA
*
94840913 TCAATATCAGTGTGGGCCTTAGCCCATTACA
1 TCAATATCAGTGTGGGCCATAGCCCATTACA
94840944 GCGACAGTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 27 0.96
35 1 0.04
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (34 bp):
TCAATATCAGTGTGGGCCATAGCCCATTACAATA
Found at i:94843677 original size:25 final size:24
Alignment explanation
Indices: 94843656--94843730 Score: 105
Period size: 25 Copynumber: 3.0 Consensus size: 24
94843646 ACTAGCTGTG
*
94843656 AATCGGTATGCTCACTCGAGCTAT
1 AATCGGTATGCTCACACGAGCTAT
* *
94843680 AGATTGGTATGCTCTCACGAGCTAT
1 A-ATCGGTATGCTCACACGAGCTAT
94843705 AAATCGGTATGCTCACACGAGCTAT
1 -AATCGGTATGCTCACACGAGCTAT
94843730 A
1 A
94843731 GGTCGAAACG
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
24 2 0.05
25 41 0.93
26 1 0.02
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (24 bp):
AATCGGTATGCTCACACGAGCTAT
Found at i:94850670 original size:28 final size:28
Alignment explanation
Indices: 94850607--94850666 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 28
94850597 TTTTTAACGA
* *
94850607 TCTATAAAATTAAGATAAAAAAAAAACT
1 TCTATCAACTTAAGATAAAAAAAAAACT
*
94850635 TCTATCAACTTAAGAT-AAAAAAAACCT
1 TCTATCAACTTAAGATAAAAAAAAAACT
94850662 TCTAT
1 TCTAT
94850667 TCAATCCGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 15 0.52
28 14 0.48
ACGTcount: A:0.55, C:0.13, G:0.03, T:0.28
Consensus pattern (28 bp):
TCTATCAACTTAAGATAAAAAAAAAACT
Found at i:94856269 original size:47 final size:45
Alignment explanation
Indices: 94856194--94856510 Score: 203
Period size: 47 Copynumber: 6.7 Consensus size: 45
94856184 GATTTCTTGT
*
94856194 GTGCCAGTGTAAGACATGTCTAGGACATGCATCGGCCACATTATGA
1 GTGCCAGTGTAAGACATGTCTAGGACATGCATCGGCCACA-GATGA
* * *
94856240 GTGCCAGTGTAAGACCATGTCTAGGACATGGCATCAGCGTAGAGATGA
1 GTGCCAGTGTAAGA-CATGTCTAGGACAT-GCATCGGC-CACAGATGA
* * *
94856288 GTGCCAGTGTAAGACATGTGTGGGACATGCATCGGCCTCGACGATGA
1 GTGCCAGTGTAAGACATGTCTAGGACATGCATCGGCCAC-A-GATGA
* * * * *
94856335 -TAGCCAGTGTAAGACGTGTCTGGGACATGCATCGACTA-AGA-GTT
1 GT-GCCAGTGTAAGACATGTCTAGGACATGCATCGGCCACAGATG-A
* * * * * *
94856379 GTGCTAGTGTAAGATATGTCTGGGACAAGCATCAG-CACGTATATACGA
1 GTGCCAGTGTAAGACATGTCTAGGACATGCATCGGCCAC--AGAT--GA
* * * * *
94856427 GAGCTAGTATAAGATCATGTCTGGGACATGGCATCGGCCTC-GATGA
1 GTGCCAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCACAGATGA
* *
94856473 TGATAGCCAATGTAAGACCATGTCTGGGACATGGCATC
1 -G-T-GCCAGTGTAAGA-CATGTCTAGGACAT-GCATC
94856511 AGCAACTTAT
Statistics
Matches: 214, Mismatches: 37, Indels: 37
0.74 0.13 0.13
Matches are distributed among these distances:
43 2 0.01
44 29 0.14
45 2 0.01
46 27 0.13
47 63 0.29
48 39 0.18
49 44 0.21
50 6 0.03
51 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (45 bp):
GTGCCAGTGTAAGACATGTCTAGGACATGCATCGGCCACAGATGA
Found at i:94856355 original size:94 final size:93
Alignment explanation
Indices: 94856194--94856367 Score: 244
Period size: 94 Copynumber: 1.9 Consensus size: 93
94856184 GATTTCTTGT
**
94856194 GTGCCAGTGTAAGACATGTCTAGGACATGCATCGGCCACATTATGAGTGCCAGTGTAAGACCATG
1 GTGCCAGTGTAAGACATGTCTAGGACATGCATCGGCCACACGATGAGTGCCAGTGTAAGACCATG
94856259 TCTAGGACATGGCATCAGCGTAGAGATGA
66 TCTAGGACAT-GCATCAGCGTAGAGATGA
* * * *
94856288 GTGCCAGTGTAAGACATGTGTGGGACATGCATCGGCCTCGACGATGA-TAGCCAGTGTAAGA-CG
1 GTGCCAGTGTAAGACATGTCTAGGACATGCATCGGCCAC-ACGATGAGT-GCCAGTGTAAGACCA
*
94856351 TGTCTGGGACATGCATC
64 TGTCTAGGACATGCATC
94856368 GACTAAGAGT
Statistics
Matches: 71, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
93 5 0.07
94 49 0.69
95 17 0.24
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.22
Consensus pattern (93 bp):
GTGCCAGTGTAAGACATGTCTAGGACATGCATCGGCCACACGATGAGTGCCAGTGTAAGACCATG
TCTAGGACATGCATCAGCGTAGAGATGA
Found at i:94864485 original size:93 final size:93
Alignment explanation
Indices: 94864360--94864528 Score: 293
Period size: 93 Copynumber: 1.8 Consensus size: 93
94864350 CATAAGTGAC
* *
94864360 CTCGAACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGA
1 CTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAACGA
94864425 GTTCGGATGCCTAGTTACATTTCACGAA
66 GTTCGGATGCCTAGTTACATTTCACGAA
* * *
94864453 CTCGGACTCAACTCATCGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAACGA
1 CTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAACGA
94864518 GTTCGGATGCC
66 GTTCGGATGCC
94864529 CAAACATCCT
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (93 bp):
CTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAACGA
GTTCGGATGCCTAGTTACATTTCACGAA
Found at i:94864524 original size:46 final size:46
Alignment explanation
Indices: 94864349--94864524 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
94864339 TGTAACCCGC
* * * * *
94864349 CCATAAGTGACCTCGAACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
94864395 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * * *
94864445 --TTCA-CGAACTCGGACTCAACTCATCGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
94864488 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
94864525 TGCCCAAACA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.58
47 28 0.26
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:94864983 original size:30 final size:30
Alignment explanation
Indices: 94864949--94865009 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
94864939 CATTTAATAC
*
94864949 AAACTTTGGAAAAATTACACTTTTGCGCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
* * *
94864979 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
94865009 A
1 A
94865010 GGCTCAGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.10, T:0.36
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACACTTTTGCCCCT
Found at i:94876592 original size:44 final size:45
Alignment explanation
Indices: 94876479--94876604 Score: 148
Period size: 44 Copynumber: 2.7 Consensus size: 45
94876469 CACATTATGA
* *
94876479 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACGAT
1 GTGCCAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCTAGACGAT
* *
94876526 GATAGCCAGTGTAAGACGTGTCTAGGACATGCATCGG-CTAAGA-GTT
1 G-T-GCCAGTGTAAGACATGTCTAGGACATGCATCGGCCT-AGACGAT
*
94876572 GTGCTAGTGTAAGACATGTCTAGGACATGCATC
1 GTGCCAGTGTAAGACATGTCTAGGACATGCATC
94876605 AGCACGTGTA
Statistics
Matches: 70, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
44 29 0.41
45 1 0.01
46 5 0.07
47 10 0.14
48 13 0.19
49 12 0.17
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24
Consensus pattern (45 bp):
GTGCCAGTGTAAGACATGTCTAGGACATGCATCGGCCTAGACGAT
Found at i:94885883 original size:21 final size:22
Alignment explanation
Indices: 94885854--94885904 Score: 72
Period size: 21 Copynumber: 2.4 Consensus size: 22
94885844 ATTTTGTTTG
94885854 TTTTACTTTTTGAAAAA-TAATA
1 TTTT-CTTTTTGAAAAATTAATA
94885876 TTTTC-TTTTGAAAAATTAATA
1 TTTTCTTTTTGAAAAATTAATA
94885897 TTTT-TTTT
1 TTTTCTTTT
94885905 ATATTTGGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
20 10 0.37
21 13 0.48
22 4 0.15
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.59
Consensus pattern (22 bp):
TTTTCTTTTTGAAAAATTAATA
Found at i:94885886 original size:20 final size:20
Alignment explanation
Indices: 94885860--94885904 Score: 74
Period size: 20 Copynumber: 2.2 Consensus size: 20
94885850 TTTGTTTTAC
94885860 TTTTTGAAAAA-TAATATTT
1 TTTTTGAAAAATTAATATTT
94885879 TCTTTTGAAAAATTAATATTT
1 T-TTTTGAAAAATTAATATTT
94885900 TTTTT
1 TTTTT
94885905 ATATTTGGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.04
20 14 0.58
21 9 0.38
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (20 bp):
TTTTTGAAAAATTAATATTT
Found at i:94886617 original size:30 final size:29
Alignment explanation
Indices: 94886583--94886650 Score: 68
Period size: 29 Copynumber: 2.3 Consensus size: 29
94886573 ATTGGACTCG
* *
94886583 ATTTTCAAATCTAAAAAGTAAAGGGACTAA
1 ATTTTCAAATAT-AAAAGTAAAGAGACTAA
* *
94886613 ATTTTTGAAA-ATAAAAGTATAGAGACTAA
1 A-TTTTCAAATATAAAAGTAAAGAGACTAA
94886642 A-TTTCAAAT
1 ATTTTCAAAT
94886651 TTGTGAAAAG
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
27 6 0.19
29 16 0.52
30 2 0.06
31 7 0.23
ACGTcount: A:0.50, C:0.07, G:0.12, T:0.31
Consensus pattern (29 bp):
ATTTTCAAATATAAAAGTAAAGAGACTAA
Found at i:94886912 original size:44 final size:44
Alignment explanation
Indices: 94886828--94886922 Score: 172
Period size: 44 Copynumber: 2.1 Consensus size: 44
94886818 TTACTAAAAC
94886828 AAAATTGAAATATTAAATAATTTATTAAAATAATAATTTATATT
1 AAAATTGAAATATTAAATAATTTATTAAAATAATAATTTATATT
*
94886872 AAAATTGAAATATTAAATAATTTATTAAGATAATAATTTATATT
1 AAAATTGAAATATTAAATAATTTATTAAAATAATAATTTATATT
94886916 AATAATT
1 AA-AATT
94886923 TATTATATGA
Statistics
Matches: 49, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
44 45 0.92
45 4 0.08
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (44 bp):
AAAATTGAAATATTAAATAATTTATTAAAATAATAATTTATATT
Found at i:94886918 original size:13 final size:13
Alignment explanation
Indices: 94886858--94886925 Score: 57
Period size: 13 Copynumber: 4.8 Consensus size: 13
94886848 TTTATTAAAA
94886858 TAATAATTTATAT
1 TAATAATTTATAT
*
94886871 TAA-AATTGAAATAT
1 TAATAATT--TATAT
*
94886885 TAAATAATTTATTAAGA
1 T-AATAATTTA-T-A-T
94886902 TAATAATTTATAT
1 TAATAATTTATAT
94886915 TAATAATTTAT
1 TAATAATTTAT
94886926 TATATGATAA
Statistics
Matches: 44, Mismatches: 4, Indels: 14
0.71 0.06 0.23
Matches are distributed among these distances:
12 4 0.09
13 14 0.32
14 7 0.16
15 4 0.09
16 14 0.32
17 1 0.02
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (13 bp):
TAATAATTTATAT
Found at i:94886928 original size:16 final size:16
Alignment explanation
Indices: 94886837--94886930 Score: 53
Period size: 16 Copynumber: 6.2 Consensus size: 16
94886827 CAAAATTGAA
94886837 ATATTAAATAATTTATT
1 ATATT-AATAATTTATT
* *
94886854 AAAATAATAA--T-TT
1 ATATTAATAATTTATT
* *
94886867 ATATTAA-AATTGA-A
1 ATATTAATAATTTATT
94886881 ATATTAAATAATTTATT
1 ATATT-AATAATTTATT
*
94886898 A-AGATAATAA--T-TT
1 ATA-TTAATAATTTATT
94886911 ATATTAATAATTTATT
1 ATATTAATAATTTATT
94886927 ATAT
1 ATAT
94886931 GATAAGATAA
Statistics
Matches: 56, Mismatches: 10, Indels: 23
0.63 0.11 0.26
Matches are distributed among these distances:
12 2 0.04
13 16 0.29
14 8 0.14
15 3 0.05
16 22 0.39
17 5 0.09
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (16 bp):
ATATTAATAATTTATT
Found at i:94887004 original size:36 final size:35
Alignment explanation
Indices: 94886960--94887030 Score: 81
Period size: 36 Copynumber: 2.0 Consensus size: 35
94886950 AATATTTATG
* * *
94886960 TTTAATATTATTGAAAATTATAATATT-TTATTAAT
1 TTTAATATTATTAAAAATAAAAAT-TTATTATTAAT
*
94886995 TTTAGATATTTTTAAAAATAAAAATTTATTATTAAT
1 TTTA-ATATTATTAAAAATAAAAATTTATTATTAAT
94887031 ATAATAATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
35 6 0.20
36 24 0.80
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (35 bp):
TTTAATATTATTAAAAATAAAAATTTATTATTAAT
Found at i:94889404 original size:50 final size:50
Alignment explanation
Indices: 94889283--94889524 Score: 247
Period size: 50 Copynumber: 4.8 Consensus size: 50
94889273 AGTCGAAGCT
* * * * *
94889283 ATCTGATACGCATAGTAGCCTACACTTAGTACTACACATGCGACC-AATA
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAATC
* * * *
94889332 ATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTCACC
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAATC
* * * *
94889382 ATCTGATACACGTAGTAGCCTGCACTTAGTAATACACACGTGATCGAAGTC
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-TC
* * * * *
94889433 AT-TAAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACTTAA-C
1 ATCTGA-TACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAATC
* * *
94889482 AGTATGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTG
1 A-TCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTG
94889525 TACTCACAAT
Statistics
Matches: 156, Mismatches: 32, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
49 41 0.26
50 77 0.49
51 38 0.24
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (50 bp):
ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAATC
Found at i:94889493 original size:101 final size:101
Alignment explanation
Indices: 94889337--94889524 Score: 288
Period size: 101 Copynumber: 1.9 Consensus size: 101
94889327 CAATAATCCG
* * *
94889337 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCATCTGATACACGTAGTAGCC
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTCAACATATGATACACGTAGTAGCC
94889402 TGCACTTAGTAATACACACGTGATCGAAGTCATTAA
66 TGCACTTAGTAATACACACGTGATCGAAGTCATTAA
* * * *
94889438 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGA-CTTAACAGTATGGTACACGTAGTAGC
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTCAACA-TATGATACACGTAGTAGC
*
94889502 CTGCACTTAGTACTACACACGTG
65 CTGCACTTAGTAATACACACGTG
94889525 TACTCACAAT
Statistics
Matches: 78, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
100 5 0.06
101 73 0.94
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (101 bp):
GTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTCAACATATGATACACGTAGTAGCC
TGCACTTAGTAATACACACGTGATCGAAGTCATTAA
Found at i:94890263 original size:105 final size:105
Alignment explanation
Indices: 94890081--94890290 Score: 420
Period size: 105 Copynumber: 2.0 Consensus size: 105
94890071 ACTCGTTTTC
94890081 ACTTAAAACCGAGTAGCACAAGTTGTCTAACATAATTTAAAGCCTCATATTCTAGTATAAAACAC
1 ACTTAAAACCGAGTAGCACAAGTTGTCTAACATAATTTAAAGCCTCATATTCTAGTATAAAACAC
94890146 CAAAATACATAAATTTCACCTATGGGTATTTTTCCAAATA
66 CAAAATACATAAATTTCACCTATGGGTATTTTTCCAAATA
94890186 ACTTAAAACCGAGTAGCACAAGTTGTCTAACATAATTTAAAGCCTCATATTCTAGTATAAAACAC
1 ACTTAAAACCGAGTAGCACAAGTTGTCTAACATAATTTAAAGCCTCATATTCTAGTATAAAACAC
94890251 CAAAATACATAAATTTCACCTATGGGTATTTTTCCAAATA
66 CAAAATACATAAATTTCACCTATGGGTATTTTTCCAAATA
94890291 TGAACCCTAG
Statistics
Matches: 105, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
105 105 1.00
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.30
Consensus pattern (105 bp):
ACTTAAAACCGAGTAGCACAAGTTGTCTAACATAATTTAAAGCCTCATATTCTAGTATAAAACAC
CAAAATACATAAATTTCACCTATGGGTATTTTTCCAAATA
Found at i:94891471 original size:30 final size:31
Alignment explanation
Indices: 94891437--94891499 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 31
94891427 GATGCAAAAT
* *
94891437 TAAAATATAAACTAAT-TAAATTAATTAACC
1 TAAAAAATAAACTAATGGAAATTAATTAACC
* *
94891467 TAAAAAATAACCTAATGGAATTTAATTAACC
1 TAAAAAATAAACTAATGGAAATTAATTAACC
94891498 TA
1 TA
94891500 GGATAACCTA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
30 14 0.50
31 14 0.50
ACGTcount: A:0.54, C:0.11, G:0.03, T:0.32
Consensus pattern (31 bp):
TAAAAAATAAACTAATGGAAATTAATTAACC
Found at i:94894705 original size:39 final size:39
Alignment explanation
Indices: 94894657--94894749 Score: 141
Period size: 39 Copynumber: 2.4 Consensus size: 39
94894647 GGCGAACCCG
* *
94894657 AAGTTCGAATATGATTCCCGCATATAGCCTACGGACCTT
1 AAGTCCGAATATAATTCCCGCATATAGCCTACGGACCTT
* *
94894696 AAGTCCGAATATAATTTCTGCATATAGCCTACGGACCTT
1 AAGTCCGAATATAATTCCCGCATATAGCCTACGGACCTT
*
94894735 AAGTCCGGATATAAT
1 AAGTCCGAATATAAT
94894750 CGCCATATAT
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 49 1.00
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (39 bp):
AAGTCCGAATATAATTCCCGCATATAGCCTACGGACCTT
Found at i:94900747 original size:3 final size:3
Alignment explanation
Indices: 94900741--94900819 Score: 158
Period size: 3 Copynumber: 26.3 Consensus size: 3
94900731 TAATAATGCG
94900741 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
94900789 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
94900820 ATTAATAAAA
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 76 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:94907001 original size:20 final size:20
Alignment explanation
Indices: 94906976--94907013 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
94906966 ACATAGAGTT
94906976 CTAAATATAATATTCATCTC
1 CTAAATATAATATTCATCTC
94906996 CTAAATATAATATTCATC
1 CTAAATATAATATTCATC
94907014 ACTCAGAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.42, C:0.18, G:0.00, T:0.39
Consensus pattern (20 bp):
CTAAATATAATATTCATCTC
Found at i:94908049 original size:19 final size:19
Alignment explanation
Indices: 94908025--94908061 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
94908015 TTTTATTTTA
94908025 TTTTTCATATTATTATTGT
1 TTTTTCATATTATTATTGT
94908044 TTTTTCATATTATTATTG
1 TTTTTCATATTATTATTG
94908062 CTGAAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.22, C:0.05, G:0.05, T:0.68
Consensus pattern (19 bp):
TTTTTCATATTATTATTGT
Found at i:94910479 original size:30 final size:30
Alignment explanation
Indices: 94910443--94910502 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
94910433 TTCCCGAGCC
*
94910443 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
94910473 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
94910503 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:94911680 original size:37 final size:37
Alignment explanation
Indices: 94911621--94911727 Score: 160
Period size: 37 Copynumber: 2.9 Consensus size: 37
94911611 AGCTCAGACG
* * *
94911621 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
94911658 AAATCTCCACACGTAGTCATCGGGTCTTACTCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
94911695 TAATCTTCACACGTAGTCATCGGGTCTTACCCG
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCG
94911728 TAATATATTT
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:94912012 original size:47 final size:47
Alignment explanation
Indices: 94911933--94912126 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
94911923 TATATATATT
* * * * *
94911933 TCACATTGACCGTTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
94911980 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
94912027 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
94912074 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
94912121 TCACAT
1 TCACAT
94912127 AAAATCCTAA
Statistics
Matches: 132, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 132 1.00
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:94912053 original size:22 final size:22
Alignment explanation
Indices: 94912026--94912097 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
94912016 GCTCACATTC
94912026 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
94912048 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
94912072 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
94912095 ATC
1 ATC
94912098 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:94917075 original size:40 final size:40
Alignment explanation
Indices: 94917024--94917215 Score: 212
Period size: 40 Copynumber: 4.8 Consensus size: 40
94917014 GGATATAGCT
* * *
94917024 ACTCGCTCAAATGCCTTTGGGACATAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
*
94917064 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATT-TAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTATAGTA
* * *
94917104 ACTCGCACCAATGCCTTCGAG-CTTAGCCCGG-AATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTA
* * *
94917143 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATAGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTA
* *
94917183 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGG
94917216 ATATCATTCG
Statistics
Matches: 128, Mismatches: 16, Indels: 15
0.81 0.10 0.09
Matches are distributed among these distances:
38 1 0.01
39 31 0.24
40 67 0.52
41 26 0.20
42 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:94917142 original size:79 final size:81
Alignment explanation
Indices: 94917059--94917216 Score: 214
Period size: 79 Copynumber: 2.0 Consensus size: 81
94917049 AGCCCGGTTA
* * * *
94917059 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCACCAATGCCTTC
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGATATAGTAACTTAGCACAAAAGCCTTC
94917122 GAG-CTTAGCCCGGAAT
65 GAGACTTAGCCCGGAAT
** *
94917138 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAAGCCTTCG
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAAGCCTTCG
*
94917203 GGACTTAGCCCGGA
66 AGACTTAGCCCGGA
94917217 TATCATTCGA
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
78 3 0.04
79 39 0.57
80 15 0.22
81 11 0.16
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (81 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAAGCCTTCG
AGACTTAGCCCGGAAT
Found at i:94924598 original size:40 final size:40
Alignment explanation
Indices: 94924547--94924632 Score: 120
Period size: 40 Copynumber: 2.1 Consensus size: 40
94924537 GGATATAGGT
* * *
94924547 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTATAGTA
1 ACTCGCACAAATGCCTTCGGAACATAACCCGGATT-TAGTA
*
94924587 ACTCGCACAAATGCCTTCGGAACTTAACCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGAACATAACCCGGATTTAGTA
94924627 ACTCGC
1 ACTCGC
94924633 NNNNNNNNNN
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
40 39 0.95
41 2 0.05
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGAACATAACCCGGATTTAGTA
Found at i:94926680 original size:24 final size:25
Alignment explanation
Indices: 94926644--94926693 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 25
94926634 AAGGAGTTCG
94926644 CACACACACAGTGC-CTCAATCATT
1 CACACACACAGTGCTCTCAATCATT
* *
94926668 CACACACATAGTGCTCTCATTCATT
1 CACACACACAGTGCTCTCAATCATT
94926693 C
1 C
94926694 GTTATTACAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 13 0.57
25 10 0.43
ACGTcount: A:0.30, C:0.36, G:0.08, T:0.26
Consensus pattern (25 bp):
CACACACACAGTGCTCTCAATCATT
Found at i:94926902 original size:40 final size:40
Alignment explanation
Indices: 94926858--94926976 Score: 157
Period size: 40 Copynumber: 3.0 Consensus size: 40
94926848 GAATACACGT
* * *
94926858 CACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAA
1 CACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATACAA
** *
94926898 CACCAGCATGAATGCTCTTCGAAACTTAGCCCGGATACAT
1 CACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATACAA
* * *
94926938 CACTAGCACGAATGCTCTTCGGGACTTAGTCCGGATACA
1 CACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
94926977 TCACTCTCAA
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 68 1.00
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
CACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATACAA
Found at i:94927086 original size:39 final size:40
Alignment explanation
Indices: 94927043--94927156 Score: 203
Period size: 39 Copynumber: 2.9 Consensus size: 40
94927033 TTACATTACT
*
94927043 GAATGCTCTTCGGGACTTTGTCTGGATACATCACTAGCA-
1 GAATGCTCTTCGGGACTTTGTCCGGATACATCACTAGCAC
94927082 GAATGCTCTTCGGGACTTTGTCCGGATACATCACTAGCAC
1 GAATGCTCTTCGGGACTTTGTCCGGATACATCACTAGCAC
*
94927122 GAATGCTCTTCGGGACTTAGTCCGGATACATCACT
1 GAATGCTCTTCGGGACTTTGTCCGGATACATCACT
94927157 CTCAATTCTC
Statistics
Matches: 72, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
39 38 0.53
40 34 0.47
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.29
Consensus pattern (40 bp):
GAATGCTCTTCGGGACTTTGTCCGGATACATCACTAGCAC
Found at i:94927198 original size:175 final size:177
Alignment explanation
Indices: 94926870--94927222 Score: 593
Period size: 175 Copynumber: 2.0 Consensus size: 177
94926860 CCAGCATGAT
*
94926870 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCATGAATGCTCTTCGAAACTTAGCCCGGATA
1 TGCTCTTCGGGACCTAGCCCGGATACAACACCAGCATGAATGCTCTTCGAAACTTAGCCCGGATA
94926935 CATCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGATACATCACTCTCAATTCTCATGTACAT
66 CATCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGATACATCACTCTCAATTCTCATGTACAT
94927000 ATACACATATGGCAATACACATTAGTATATCATTTACATTAC-TGAA
131 ATACACATATGGCAATACACATTAGTATATCATTTACATTACTTGAA
* * * * * * ** * *
94927046 TGCTCTTCGGGACTTTGTCTGGATACATCACTAGCA-GAATGCTCTTCGGGACTTTGTCCGGATA
1 TGCTCTTCGGGACCTAGCCCGGATACAACACCAGCATGAATGCTCTTCGAAACTTAGCCCGGATA
94927110 CATCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGATACATCACTCTCAATTCTCATGTACAT
66 CATCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGATACATCACTCTCAATTCTCATGTACAT
94927175 ATACACATATGGCAATACACATTAGTATATCATTTACATTACTTGAA
131 ATACACATATGGCAATACACATTAGTATATCATTTACATTACTTGAA
94927222 T
1 T
94927223 ACAAACACAA
Statistics
Matches: 165, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
175 131 0.79
176 34 0.21
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (177 bp):
TGCTCTTCGGGACCTAGCCCGGATACAACACCAGCATGAATGCTCTTCGAAACTTAGCCCGGATA
CATCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGATACATCACTCTCAATTCTCATGTACAT
ATACACATATGGCAATACACATTAGTATATCATTTACATTACTTGAA
Found at i:94927493 original size:224 final size:224
Alignment explanation
Indices: 94927103--94927552 Score: 864
Period size: 224 Copynumber: 2.0 Consensus size: 224
94927093 GGGACTTTGT
* *
94927103 CCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGATACATCACTCTCAATTCTCA
1 CCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCAGATACATCACTCTCAATTCTCA
94927168 TGTACATATACACATATGGCAATACACATTAGTATATCATTTACATTACTTGAATACAAACACAA
66 TGTACATATACACATATGGCAATACACATTAGTATATCATTTACATTACTTGAATACAAACACAA
94927233 CATGCTTATCGACCATTCAACTTCCAGTTCCATAGCCACATACAAAAATCACATTTATAGTCATA
131 CATGCTTATCGACCATTCAACTTCCAGTTCCATAGCCACATACAAAAATCACATTTATAGTCATA
94927298 ACACTCTTTCAAAATTGCATCACTTATAC
196 ACACTCTTTCAAAATTGCATCACTTATAC
*
94927327 CCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCAGATATATCACTCTCAATTCTCA
1 CCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCAGATACATCACTCTCAATTCTCA
94927392 TGTACATATACACATATGGCAATACACATTAGTATATCATTTACATTACTTGAATACAAACACAA
66 TGTACATATACACATATGGCAATACACATTAGTATATCATTTACATTACTTGAATACAAACACAA
94927457 CATGCTTATCGACCATTCAACTTCCAGTTCCATAGCCACATACAAAAATCACATTTATAGTCATA
131 CATGCTTATCGACCATTCAACTTCCAGTTCCATAGCCACATACAAAAATCACATTTATAGTCATA
*
94927522 ACACTCTTTCAAGATTGCATCACTTATAC
196 ACACTCTTTCAAAATTGCATCACTTATAC
94927551 CC
1 CC
94927553 TTATAATTCA
Statistics
Matches: 222, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
224 222 1.00
ACGTcount: A:0.35, C:0.26, G:0.10, T:0.29
Consensus pattern (224 bp):
CCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCAGATACATCACTCTCAATTCTCA
TGTACATATACACATATGGCAATACACATTAGTATATCATTTACATTACTTGAATACAAACACAA
CATGCTTATCGACCATTCAACTTCCAGTTCCATAGCCACATACAAAAATCACATTTATAGTCATA
ACACTCTTTCAAAATTGCATCACTTATAC
Found at i:94928709 original size:37 final size:37
Alignment explanation
Indices: 94928650--94928759 Score: 159
Period size: 37 Copynumber: 3.0 Consensus size: 37
94928640 AGCTCAGACG
* *
94928650 AAATCTCCACACGAAGTTATCGGGTCTTAACCGGAAA
1 AAATCTCCACACGTAGTCATCGGGTCTTAACCGGAAA
*
94928687 AAATCTCCACACGTAGTCATCGGGTCTT-ACCGGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTAACC-GGAAA
* *
94928724 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGAA
1 AAATCTCCACACGTAGTCATCGGGTCTTAACCGGAA
94928760 TATATTTCCA
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
36 3 0.05
37 60 0.92
38 2 0.03
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTAACCGGAAA
Found at i:94929041 original size:47 final size:47
Alignment explanation
Indices: 94928962--94929155 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
94928952 TATATATATT
* * * * *
94928962 TCACATTGACCGTTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
94929009 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
94929056 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
94929103 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
94929150 TCACAT
1 TCACAT
94929156 AAAATCCTAA
Statistics
Matches: 132, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 132 1.00
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:94929082 original size:22 final size:22
Alignment explanation
Indices: 94929055--94929126 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
94929045 GCTCACATTC
94929055 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
94929077 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
94929101 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
94929124 ATC
1 ATC
94929127 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:94932149 original size:22 final size:22
Alignment explanation
Indices: 94932074--94932149 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
94932064 ACATGCACAT
*
94932074 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCAGAATGGCCA
*
94932096 ATGTGATAAATGTG-A-ACAT-GCATA
1 ATGTGAT-AA-G-GCAGA-ATGGC-CA
94932120 TATGTGATAAGGCAGAATGGCCA
1 -ATGTGATAAGGCAGAATGGCCA
94932143 ATGTGAT
1 ATGTGAT
94932150 GAACGTGGAA
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 15 0.36
23 10 0.24
24 9 0.21
25 8 0.19
ACGTcount: A:0.36, C:0.12, G:0.28, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCAGAATGGCCA
Found at i:94932186 original size:47 final size:47
Alignment explanation
Indices: 94932040--94932152 Score: 190
Period size: 47 Copynumber: 2.4 Consensus size: 47
94932030 GGTGTTACAT
* *
94932040 GAATGGCCAATGTGATGAATATGAACATGCACATATGTGATAAGGCC
1 GAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCC
* *
94932087 GAATGGCCAATGTGATAAATGTGAACATGCATATATGTGATAAGGCA
1 GAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCC
94932134 GAATGGCCAATGTGATGAA
1 GAATGGCCAATGTGATGAA
94932153 CGTGGAAGTG
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 61 1.00
ACGTcount: A:0.37, C:0.12, G:0.27, T:0.24
Consensus pattern (47 bp):
GAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCC
Found at i:94932219 original size:46 final size:46
Alignment explanation
Indices: 94932166--94932256 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
94932156 GGAAGTGTAT
* * *
94932166 ATATGTGGGAAAGCCGAATGGTTAATGCGAAATGTGTATGAGATGG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
* * *
94932212 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATG
94932257 TGTATATATA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.34, C:0.07, G:0.32, T:0.27
Consensus pattern (46 bp):
ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
Found at i:94937765 original size:47 final size:46
Alignment explanation
Indices: 94937694--94937861 Score: 219
Period size: 47 Copynumber: 3.6 Consensus size: 46
94937684 CCCTTCGGGA
* * * *
94937694 CTTATCACGTTTATACACTTTCACATCCATCACGTTGGCCACTCAGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCA-TCAGC
* * * *
94937741 CCTATCACATATATACACTTTCACATTCATCATATTGGTCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCA-TCAGC
* *
94937788 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATCA-GC
94937835 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
94937862 TATTCAAATA
Statistics
Matches: 105, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
46 1 0.01
47 104 0.99
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.35
Consensus pattern (46 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATCAGC
Found at i:94946172 original size:288 final size:288
Alignment explanation
Indices: 94945656--94946231 Score: 1143
Period size: 288 Copynumber: 2.0 Consensus size: 288
94945646 TGGTATGAAA
94945656 CGAGACATCTCCGACTTTGTTTCGAGATGTTTAATATGTCAACAAGTGAAAGCAGAACATCAAGT
1 CGAGACATCTCCGACTTTGTTTCGAGATGTTTAATATGTCAACAAGTGAAAGCAGAACATCAAGT
94945721 GCCTTCAGGATTACTTCAGCCGATCATGATACCCGAGTGGAAATGGGATCGAGTCACAATGGACT
66 GCCTTCAGGATTACTTCAGCCGATCATGATACCCGAGTGGAAATGGGATCGAGTCACAATGGACT
94945786 TTGTGTCCGGACTGCCATTGTCAGCAAGTAAGAAAGATGCGATTTGGGTTGTTGTCGATAGACTG
131 TTGTGTCCGGACTGCCATTGTCAGCAAGTAAGAAAGATGCGATTTGGGTTGTTGTCGATAGACTG
94945851 ACTAAGTCGGCTCACTTTATCCCCGTGCGTACGGATTTTTCATTGGATAAACTAGCTGAATTGTA
196 ACTAAGTCGGCTCACTTTATCCCCGTGCGTACGGATTTTTCATTGGATAAACTAGCTGAATTGTA
*
94945916 CGTTTCTCAGATTGTGAGATTACACGGG
261 CGTTTCTCAAATTGTGAGATTACACGGG
94945944 CGAGACATCTCCGACTTTGTTTCGAGATGTTTAATATGTCAACAAGTGAAAGCAGAACATCAAGT
1 CGAGACATCTCCGACTTTGTTTCGAGATGTTTAATATGTCAACAAGTGAAAGCAGAACATCAAGT
94946009 GCCTTCAGGATTACTTCAGCCGATCATGATACCCGAGTGGAAATGGGATCGAGTCACAATGGACT
66 GCCTTCAGGATTACTTCAGCCGATCATGATACCCGAGTGGAAATGGGATCGAGTCACAATGGACT
94946074 TTGTGTCCGGACTGCCATTGTCAGCAAGTAAGAAAGATGCGATTTGGGTTGTTGTCGATAGACTG
131 TTGTGTCCGGACTGCCATTGTCAGCAAGTAAGAAAGATGCGATTTGGGTTGTTGTCGATAGACTG
94946139 ACTAAGTCGGCTCACTTTATCCCCGTGCGTACGGATTTTTCATTGGATAAACTAGCTGAATTGTA
196 ACTAAGTCGGCTCACTTTATCCCCGTGCGTACGGATTTTTCATTGGATAAACTAGCTGAATTGTA
94946204 CGTTTCTCAAATTGTGAGATTACACGGG
261 CGTTTCTCAAATTGTGAGATTACACGGG
94946232 GTACCTATTT
Statistics
Matches: 287, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
288 287 1.00
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.29
Consensus pattern (288 bp):
CGAGACATCTCCGACTTTGTTTCGAGATGTTTAATATGTCAACAAGTGAAAGCAGAACATCAAGT
GCCTTCAGGATTACTTCAGCCGATCATGATACCCGAGTGGAAATGGGATCGAGTCACAATGGACT
TTGTGTCCGGACTGCCATTGTCAGCAAGTAAGAAAGATGCGATTTGGGTTGTTGTCGATAGACTG
ACTAAGTCGGCTCACTTTATCCCCGTGCGTACGGATTTTTCATTGGATAAACTAGCTGAATTGTA
CGTTTCTCAAATTGTGAGATTACACGGG
Found at i:94952940 original size:54 final size:55
Alignment explanation
Indices: 94952866--94952972 Score: 198
Period size: 55 Copynumber: 2.0 Consensus size: 55
94952856 CCATTCACCT
94952866 CAATGGAGGGGGGGCAACCACACACA-TTTTTTTTGTCATCATTTACCTTCCCGG
1 CAATGGAGGGGGGGCAACCACACACATTTTTTTTTGTCATCATTTACCTTCCCGG
*
94952920 CAATGGGGGGGGGGCAACCACACACATTTTTTTTTGTCATCATTTACCTTCCC
1 CAATGGAGGGGGGGCAACCACACACATTTTTTTTTGTCATCATTTACCTTCCC
94952973 ATTATTATTT
Statistics
Matches: 51, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
54 25 0.49
55 26 0.51
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.31
Consensus pattern (55 bp):
CAATGGAGGGGGGGCAACCACACACATTTTTTTTTGTCATCATTTACCTTCCCGG
Found at i:94954893 original size:40 final size:40
Alignment explanation
Indices: 94954742--94955057 Score: 204
Period size: 40 Copynumber: 7.8 Consensus size: 40
94954732 CCAGCATGAT
* * * * *
94954742 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCAGGACTTAGCCCGGATACATCACTAGCACGAA
* ** * *
94954782 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCAGGACTTAGCCCGGATACATCACTAGCACGAA
* *
94954822 TGCTCTTCAGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCAGGACTTAGCCCGGATACATCACTAGCACGAA
*
94954862 TGCTCTTCAGGACTTAGCCCGGATACATCACT--CTC-AA
1 TGCTCTTCAGGACTTAGCCCGGATACATCACTAGCACGAA
* * ** * *
94954899 T--TC-TCATGTACATATA-CACATATAGCAATACACATTAGTA--TA
1 TGCTCTTCA-GGAC-T-TAGCCCGGATA-C-AT-CAC--TAGCACGAA
** * *
94954941 T-CAT-TTACATTACTTGAATACTCCCGGATACATCACTAGCAAGAA
1 TGC-TCTT-CAGGAC-T---TA-GCCCGGATACATCACTAGCACGAA
*
94954986 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCAGGACTTAGCCCGGATACATCACTAGCACGAA
94955026 TGCTCTTCAGGACTTAGCCCGGATACATCACT
1 TGCTCTTCAGGACTTAGCCCGGATACATCACT
94955058 CTCAATTCTC
Statistics
Matches: 218, Mismatches: 36, Indels: 44
0.73 0.12 0.15
Matches are distributed among these distances:
34 3 0.01
35 5 0.02
36 6 0.03
37 6 0.03
38 4 0.02
39 3 0.01
40 150 0.69
41 3 0.01
42 2 0.01
43 4 0.02
44 7 0.03
45 11 0.05
46 8 0.04
47 1 0.00
48 5 0.02
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.26
Consensus pattern (40 bp):
TGCTCTTCAGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:94955079 original size:164 final size:164
Alignment explanation
Indices: 94954801--94955125 Score: 605
Period size: 164 Copynumber: 2.0 Consensus size: 164
94954791 GGGTTTAGCA
* * *
94954801 CGGATATATCACTAGCACGAATGCTCTTCAGAACTTAGTCCGGATACATCACTAGCACGAATGCT
1 CGGATACATCACTAGCAAGAATGCTCTTCAGAACTTAGCCCGGATACATCACTAGCACGAATGCT
94954866 CTTCAGGACTTAGCCCGGATACATCACTCTCAATTCTCATGTACATATACACATATAGCAATACA
66 CTTCAGGACTTAGCCCGGATACATCACTCTCAATTCTCATGTACATATACACATATAGCAATACA
94954931 CATTAGTATATCATTTACATTACTTGAATACTCC
131 CATTAGTATATCATTTACATTACTTGAATACTCC
* *
94954965 CGGATACATCACTAGCAAGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCT
1 CGGATACATCACTAGCAAGAATGCTCTTCAGAACTTAGCCCGGATACATCACTAGCACGAATGCT
94955030 CTTCAGGACTTAGCCCGGATACATCACTCTCAATTCTCATGTACATATACACATATAGCAATACA
66 CTTCAGGACTTAGCCCGGATACATCACTCTCAATTCTCATGTACATATACACATATAGCAATACA
94955095 CATTAGTATATCATTTACATTACTTGAATAC
131 CATTAGTATATCATTTACATTACTTGAATAC
94955126 AAACACAACA
Statistics
Matches: 156, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
164 156 1.00
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.29
Consensus pattern (164 bp):
CGGATACATCACTAGCAAGAATGCTCTTCAGAACTTAGCCCGGATACATCACTAGCACGAATGCT
CTTCAGGACTTAGCCCGGATACATCACTCTCAATTCTCATGTACATATACACATATAGCAATACA
CATTAGTATATCATTTACATTACTTGAATACTCC
Found at i:94959199 original size:26 final size:26
Alignment explanation
Indices: 94959170--94959242 Score: 92
Period size: 26 Copynumber: 2.8 Consensus size: 26
94959160 ACACACTAAA
* *
94959170 ATCACAGCAACGCTGCCAGTAATAAT
1 ATCACAGCAAAGCTGCCAGTAACAAT
* *
94959196 ATCACAGCAAAGCTTCCAATAACAAT
1 ATCACAGCAAAGCTGCCAGTAACAAT
* *
94959222 AACGCAGCAAAGCTGCCAGTA
1 ATCACAGCAAAGCTGCCAGTA
94959243 TCAGGCTTAA
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.41, C:0.27, G:0.15, T:0.16
Consensus pattern (26 bp):
ATCACAGCAAAGCTGCCAGTAACAAT
Found at i:94966938 original size:75 final size:75
Alignment explanation
Indices: 94966853--94967005 Score: 288
Period size: 75 Copynumber: 2.0 Consensus size: 75
94966843 TAAAACCGAA
* *
94966853 AAAGGCAAAGAGGTAAGTAGACCATAGATATTCAGCCAAGAAGGAAGTCATTTGAGAAAAGGTGC
1 AAAGGAAAAGAGGTAAGCAGACCATAGATATTCAGCCAAGAAGGAAGTCATTTGAGAAAAGGTGC
94966918 GCAGGAAAAG
66 GCAGGAAAAG
94966928 AAAGGAAAAGAGGTAAGCAGACCATAGATATTCAGCCAAGAAGGAAGTCATTTGAGAAAAGGTGC
1 AAAGGAAAAGAGGTAAGCAGACCATAGATATTCAGCCAAGAAGGAAGTCATTTGAGAAAAGGTGC
94966993 GCAGGAAAAG
66 GCAGGAAAAG
94967003 AAA
1 AAA
94967006 ATCGTGGACA
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
75 76 1.00
ACGTcount: A:0.46, C:0.12, G:0.29, T:0.14
Consensus pattern (75 bp):
AAAGGAAAAGAGGTAAGCAGACCATAGATATTCAGCCAAGAAGGAAGTCATTTGAGAAAAGGTGC
GCAGGAAAAG
Found at i:94970795 original size:220 final size:220
Alignment explanation
Indices: 94970413--94970840 Score: 757
Period size: 220 Copynumber: 1.9 Consensus size: 220
94970403 TTGATATGGC
* * *
94970413 AGAAGAGAAAAGAATGAGCAGAGACTACATCCAAAAACACAGCACTTACCACTAAGATCGACAAA
1 AGAAGAGAAAAGAATAAACAGAGACTACATCCAAAAACACAGCACTTACCACCAAGATCGACAAA
*
94970478 TAAGGACAAAAGCAAGAATCGGTTTATAAGGGTCAATGCAGGAGCACTATTCGGCCAACAAAGAT
66 TAAGGACAAAAGCAAGAATCGGTTTACAAGGGTCAATGCAGGAGCACTATTCGGCCAACAAAGAT
* * *
94970543 TAGGTTGCACTGAAGAGAAGGATGAAGAAAAACATAGAATGGATCGGTCACCACAGGCTAAAACC
131 TAGGTTGCACTGAAGAGAAGGATGAAGAAAAACAAAGAATGGATCAGTCACCACAAGCTAAAACC
94970608 AAAAAAGGCAAAGTATAGATATCGT
196 AAAAAAGGCAAAGTATAGATATCGT
**
94970633 AGAAGAGAAAAGAATAAACAGAGACTACATCCAAATTCACAGCACTTACCACCAAGATCGACAAA
1 AGAAGAGAAAAGAATAAACAGAGACTACATCCAAAAACACAGCACTTACCACCAAGATCGACAAA
*
94970698 TAAGGACAAAAGCAAGAATCGGTTTACAAGGGTCAATGCATGAGCACTATTCGGCCAACAAAGAT
66 TAAGGACAAAAGCAAGAATCGGTTTACAAGGGTCAATGCAGGAGCACTATTCGGCCAACAAAGAT
94970763 TAGGTTGCACTGAAGAGAAGGATGAAGAAAAACAAAGAATGGATCAGTCACCACAAGCTAAAACC
131 TAGGTTGCACTGAAGAGAAGGATGAAGAAAAACAAAGAATGGATCAGTCACCACAAGCTAAAACC
*
94970828 GAAAAAGGCAAAG
196 AAAAAAGGCAAAG
94970841 AGGTAAGTAG
Statistics
Matches: 197, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
220 197 1.00
ACGTcount: A:0.46, C:0.18, G:0.21, T:0.15
Consensus pattern (220 bp):
AGAAGAGAAAAGAATAAACAGAGACTACATCCAAAAACACAGCACTTACCACCAAGATCGACAAA
TAAGGACAAAAGCAAGAATCGGTTTACAAGGGTCAATGCAGGAGCACTATTCGGCCAACAAAGAT
TAGGTTGCACTGAAGAGAAGGATGAAGAAAAACAAAGAATGGATCAGTCACCACAAGCTAAAACC
AAAAAAGGCAAAGTATAGATATCGT
Found at i:94972238 original size:150 final size:150
Alignment explanation
Indices: 94971977--94972265 Score: 524
Period size: 150 Copynumber: 1.9 Consensus size: 150
94971967 CTCGCTGGCT
* *
94971977 GGTAGGTTCGGATGCGTTTTAACATGTTTCAAAAAACCAGTGTCCAGCCTTGAAGAACTGTGATC
1 GGTAGGTTCGGATACGTTTTAACATGTTTCAAAAAACCAGTGTCCAGCCTTGAAGAACTATGATC
*
94972042 TCTCTTCTTCTTACAACCCAAACACCCAGCCTGAAGCGTTTCACTAATTTCCTTAACTCTGGCCT
66 TCTCTTCTTCTTACAACCCAAACACCCAGCCGGAAGCGTTTCACTAATTTCCTTAACTCTGGCCT
94972107 CAAACACCTACTCGCAAGCC
131 CAAACACCTACTCGCAAGCC
* * *
94972127 GGTAGGTTCGGATACGTTTTAACATGTTTCACAAAACGAGTGTCCCGCCTTGAAGAACTATGATC
1 GGTAGGTTCGGATACGTTTTAACATGTTTCAAAAAACCAGTGTCCAGCCTTGAAGAACTATGATC
94972192 TCTCTTCTTCTTACAACCCAAACACCCAGCCGGAAGCGTTTCACTAATTTCCTTAACTCTGGCCT
66 TCTCTTCTTCTTACAACCCAAACACCCAGCCGGAAGCGTTTCACTAATTTCCTTAACTCTGGCCT
94972257 CAAACACCT
131 CAAACACCT
94972266 CCTCTAGCAT
Statistics
Matches: 133, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
150 133 1.00
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.28
Consensus pattern (150 bp):
GGTAGGTTCGGATACGTTTTAACATGTTTCAAAAAACCAGTGTCCAGCCTTGAAGAACTATGATC
TCTCTTCTTCTTACAACCCAAACACCCAGCCGGAAGCGTTTCACTAATTTCCTTAACTCTGGCCT
CAAACACCTACTCGCAAGCC
Found at i:94978241 original size:37 final size:37
Alignment explanation
Indices: 94978180--94978263 Score: 118
Period size: 37 Copynumber: 2.3 Consensus size: 37
94978170 TACTCACATG
*
94978180 TGCATCACATAACGACCTTGTGATTTAGTCTAAATCA
1 TGCATCACATAACGACCTTATGATTTAGTCTAAATCA
*
94978217 TGCATCACATAACTG-CCTTATGATTTAGTTTAAATCA
1 TGCATCACATAAC-GACCTTATGATTTAGTCTAAATCA
*
94978254 AGC-TCACATA
1 TGCATCACATA
94978264 TAAACTTGGA
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
36 7 0.16
37 35 0.81
38 1 0.02
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.33
Consensus pattern (37 bp):
TGCATCACATAACGACCTTATGATTTAGTCTAAATCA
Found at i:94978492 original size:37 final size:37
Alignment explanation
Indices: 94978386--94978492 Score: 169
Period size: 37 Copynumber: 2.9 Consensus size: 37
94978376 AGCTCAGATG
* * *
94978386 AAATCTCCACACGAAGTTATCGGGTCTTACCCAGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
94978423 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
94978460 TAATCTCCACACGTAGTCATCAGGTCTTACCCG
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCG
94978493 AAATATATTT
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:94978770 original size:52 final size:52
Alignment explanation
Indices: 94978644--94979248 Score: 926
Period size: 52 Copynumber: 11.9 Consensus size: 52
94978634 CATCGCCTAC
* *
94978644 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC----ATAC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
94978692 ATATTTCACATTAGCCATTCGGCTTTACCACATAGACATATCTCATATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
94978744 ATATTTCACATTAGCCATTCGGCTTTACCACACATACATA--TCATATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
94978794 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
94978846 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
94978898 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
94978950 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
94979002 ATATTTCACATTAGCCATTCGGCTTTACTTACCACATATACATATCTC----ATAC
1 ATATTTCACATTAGCCATTCGGC--T--TTACCACATATACATATCTCATATATAT
* *
94979054 ATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTC----ATAC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * *
94979102 ATATTTCACAGTAGCCATTCGGCTTTACCACATATACTTATCTC----ATAC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
94979150 ATATTTCACATTAGCCATTCGGCGCTTTACCACATATACATATCTC--ATATAT
1 ATATTTCACATTAGCCATTC-G-GCTTTACCACATATACATATCTCATATATAT
94979202 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
94979249 CATCAATTTC
Statistics
Matches: 529, Mismatches: 12, Indels: 28
0.93 0.02 0.05
Matches are distributed among these distances:
48 131 0.25
49 1 0.00
50 95 0.18
51 1 0.00
52 280 0.53
54 1 0.00
56 20 0.04
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.37
Consensus pattern (52 bp):
ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
Found at i:94991380 original size:43 final size:43
Alignment explanation
Indices: 94991305--94991590 Score: 288
Period size: 43 Copynumber: 6.6 Consensus size: 43
94991295 ACAAAAGTTT
* *
94991305 GCGGCG-TTTTTTATAAAAGCGCCGCTAAAGACCAGGACCTTTA
1 GCGGCGCTTTTTTA-AAAAACGCCGCTATAGACCAGGACCTTTA
* * *
94991348 -CTGGCGCTTTTTTAAAAAACGCAGCTATAGACCAAGAACTTTA
1 GC-GGCGCTTTTTTAAAAAACGCCGCTATAGACCAGGACCTTTA
* * * * *
94991391 GCGGCGCTTTTATAAAAAACGCCACTATAGACCTGTACTTTTA
1 GCGGCGCTTTTTTAAAAAACGCCGCTATAGACCAGGACCTTTA
* * * * *
94991434 GCGGCGCATTTATAAAAAACGCCGCTATAGACCTGTACTTTTA
1 GCGGCGCTTTTTTAAAAAACGCCGCTATAGACCAGGACCTTTA
* * * * * *
94991477 ACGGTGCTTTTATAAAAAACGCCGCTATAGACCTGTACTTTTA
1 GCGGCGCTTTTTTAAAAAACGCCGCTATAGACCAGGACCTTTA
* * * * * *
94991520 GCGGTGTTTTTTTACAAAAGCGCCACTATAGACCAAGAACTTTA
1 GCGGCGCTTTTTTA-AAAAACGCCGCTATAGACCAGGACCTTTA
94991564 GCGGCGCTTTTTTAAAAAACGCCGCTA
1 GCGGCGCTTTTTTAAAAAACGCCGCTA
94991591 ATTTGCCCAG
Statistics
Matches: 207, Mismatches: 32, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
42 1 0.00
43 164 0.79
44 42 0.20
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (43 bp):
GCGGCGCTTTTTTAAAAAACGCCGCTATAGACCAGGACCTTTA
Found at i:94991440 original size:86 final size:86
Alignment explanation
Indices: 94991350--94991586 Score: 325
Period size: 86 Copynumber: 2.7 Consensus size: 86
94991340 GACCTTTACT
94991350 GGCGCTTTTTTAAAAAACGCAGCTATAGACCAAGAACTTTAGCGGCGCTTTTATAAAAAACGCCA
1 GGCGCTTTTTTAAAAAACGCAGCTATAGACCAAGAACTTTAGCGGCGCTTTTATAAAAAACGCCA
94991415 CTATAGACCTGTACTTTTAGC
66 CTATAGACCTGTACTTTTAGC
* * * * * * *
94991436 GGCGCATTTATAAAAAACGCCGCTATAGACC-TGTACTTTTAACGGTGCTTTTATAAAAAACGCC
1 GGCGCTTTTTTAAAAAACGCAGCTATAGACCAAGAAC-TTTAGCGGCGCTTTTATAAAAAACGCC
*
94991500 GCTATAGACCTGTACTTTTAGC
65 ACTATAGACCTGTACTTTTAGC
* * * *
94991522 GGTGTTTTTTTACAAAAGCGCCA-CTATAGACCAAGAACTTTAGCGGCGCTTTTTTAAAAAACGC
1 GGCGCTTTTTTA-AAAAACG-CAGCTATAGACCAAGAACTTTAGCGGCGCTTTTATAAAAAACGC
94991586 C
64 C
94991587 GCTAATTTGC
Statistics
Matches: 128, Mismatches: 19, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
85 3 0.02
86 82 0.64
87 39 0.30
88 4 0.03
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (86 bp):
GGCGCTTTTTTAAAAAACGCAGCTATAGACCAAGAACTTTAGCGGCGCTTTTATAAAAAACGCCA
CTATAGACCTGTACTTTTAGC
Found at i:94991466 original size:129 final size:130
Alignment explanation
Indices: 94991314--94991591 Score: 332
Period size: 129 Copynumber: 2.2 Consensus size: 130
94991304 TGCGGCGTTT
* *
94991314 TTTAT-AAAAGCGCCGCTAAAGACCAGGACCTTT-ACTGGCGCTTTTTTAAAAAACGCAGCTATA
1 TTTATAAAAAACGCCGCTAAAGACCAGGACCTTTAAC-GGCGCTTTTATAAAAAACGCAGCTATA
* *
94991377 GACCAAGAAC-TTTAGCGGCGCTTTTATA-AAAAACGCCACTATAGACC-TGTACTTTTAGCGGC
65 GACC-AGAACTTTTAGCGGCGCTTTTATACAAAAACGCCACTATAGACCAAGAAC-TTTAGCGGC
94991439 GCA
128 GCA
* * * * * *
94991442 TTTATAAAAAACGCCGCTATAGACCTGTACTTTTAACGGTGCTTTTATAAAAAACGCCGCTATAG
1 TTTATAAAAAACGCCGCTAAAGACCAGGACCTTTAACGGCGCTTTTATAAAAAACGCAGCTATAG
* * * * * * *
94991507 ACCTGTACTTTTAGCGGTGTTTTTTTACAAAAGCGCCACTATAGACCAAGAACTTTAGCGGCGCT
66 ACCAGAACTTTTAGCGGCGCTTTTATACAAAAACGCCACTATAGACCAAGAACTTTAGCGGCGCA
*
94991572 TTTTTAAAAAACGCCGCTAA
1 TTTATAAAAAACGCCGCTAA
94991592 TTTGCCCAGT
Statistics
Matches: 126, Mismatches: 19, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
128 8 0.06
129 66 0.52
130 49 0.39
131 3 0.02
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (130 bp):
TTTATAAAAAACGCCGCTAAAGACCAGGACCTTTAACGGCGCTTTTATAAAAAACGCAGCTATAG
ACCAGAACTTTTAGCGGCGCTTTTATACAAAAACGCCACTATAGACCAAGAACTTTAGCGGCGCA
Found at i:94991912 original size:21 final size:21
Alignment explanation
Indices: 94991888--94991935 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
94991878 TCCTGTTCTG
94991888 CTCCGCCTCCCTCGCTGCTGC
1 CTCCGCCTCCCTCGCTGCTGC
*
94991909 CTCCGCCTCCCTCGTTGCTGC
1 CTCCGCCTCCCTCGCTGCTGC
94991930 CTCCGC
1 CTCCGC
94991936 TCTAAGTTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.00, C:0.56, G:0.19, T:0.25
Consensus pattern (21 bp):
CTCCGCCTCCCTCGCTGCTGC
Found at i:94993890 original size:40 final size:40
Alignment explanation
Indices: 94993818--94994028 Score: 230
Period size: 40 Copynumber: 5.3 Consensus size: 40
94993808 TCTTCGGAAT
* * * * *
94993818 TTAG-CCGGATATAACCACAAGCGCAATTGCCTTCGGGTC
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
* * * * *
94993857 TTAACCCGGGT-ATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTC
* * *
94993897 TTAGCCCGGAT-ATATCAACTCGTACAAATGCCTTCGGGTC
1 TTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTC
* *
94993937 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
* *
94993977 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
94994017 TTAGCCCGGATA
1 TTAGCCCGGATA
94994029 TCATTCAAAT
Statistics
Matches: 151, Mismatches: 18, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 5 0.03
40 142 0.94
41 4 0.03
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
Found at i:94995849 original size:18 final size:18
Alignment explanation
Indices: 94995817--94995854 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
94995807 TACAATATAG
94995817 TAGTAAAAATATTATTTAA
1 TAGTAAAAATATTA-TTAA
*
94995836 TAGTAAAAA-GTTATTAA
1 TAGTAAAAATATTATTAA
94995853 TA
1 TA
94995855 CTTGATAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 3 0.17
19 9 0.50
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (18 bp):
TAGTAAAAATATTATTAA
Found at i:95003293 original size:133 final size:133
Alignment explanation
Indices: 95003055--95003306 Score: 495
Period size: 133 Copynumber: 1.9 Consensus size: 133
95003045 GAATTCAACA
95003055 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
1 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
95003120 TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAATATAACAATTTT
66 TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAATATAACAATTTT
95003185 ATT
131 ATT
*
95003188 ATATAAAACGTGAGCAACAAGACAGCATTAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
1 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
95003253 TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAAT
66 TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAAT
95003307 GGAATCACCA
Statistics
Matches: 118, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
133 118 1.00
ACGTcount: A:0.51, C:0.19, G:0.10, T:0.20
Consensus pattern (133 bp):
ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAATATAACAATTTT
ATT
Found at i:95006704 original size:10 final size:11
Alignment explanation
Indices: 95006683--95006733 Score: 57
Period size: 12 Copynumber: 4.3 Consensus size: 11
95006673 ACTAAACCAC
95006683 TTTTCATATATA
1 TTTT-ATATATA
95006695 TATTTATATATA
1 T-TTTATATATA
*
95006707 TTTTAAAATAATA
1 TTTT-ATAT-ATA
95006720 TTTTATATATA
1 TTTTATATATA
95006731 TTT
1 TTT
95006734 ATCTTATATA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
11 9 0.26
12 15 0.44
13 10 0.29
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (11 bp):
TTTTATATATA
Found at i:95006742 original size:15 final size:15
Alignment explanation
Indices: 95006722--95006753 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
95006712 AAATAATATT
*
95006722 TTATATATATTTATC
1 TTATATACATTTATC
95006737 TTATATACATTTATC
1 TTATATACATTTATC
95006752 TT
1 TT
95006754 CTAAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.59
Consensus pattern (15 bp):
TTATATACATTTATC
Found at i:95007878 original size:40 final size:40
Alignment explanation
Indices: 95007783--95007999 Score: 305
Period size: 40 Copynumber: 5.4 Consensus size: 40
95007773 GGTTATGGGA
95007783 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCT-G
* *
95007824 TTTTTAGCGGCGTTTTACCAAAAGCGGCGCTAATGCCCTG
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTG
* *
95007864 TTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCCCTG
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTG
* * *
95007904 -TTTTAACGGTGTTTTA-TAGAAAGCGCCGCTAATGCTCTG
1 TTTTTAGCGGCGTTTTACCA-AAAGCGCCGCTAATGCTCTG
* *
95007943 TTTTTAGCGGCGTTTTACCGAAAGTGCTC-CTAATGCTCTG
1 TTTTTAGCGGCGTTTTACCAAAAGCGC-CGCTAATGCTCTG
95007983 TTTTTAGCGGCGTTTTA
1 TTTTTAGCGGCGTTTTA
95008000 GTGAAAAACG
Statistics
Matches: 158, Mismatches: 14, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
39 33 0.21
40 87 0.55
41 38 0.24
ACGTcount: A:0.19, C:0.23, G:0.24, T:0.35
Consensus pattern (40 bp):
TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTG
Found at i:95007948 original size:79 final size:79
Alignment explanation
Indices: 95007783--95007999 Score: 294
Period size: 79 Copynumber: 2.7 Consensus size: 79
95007773 GGTTATGGGA
* *
95007783 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTACCAAAAG
1 TTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCT-G-TTTTAACGGCGTTTTACCAAAAG
*
95007848 CGGCGCTAATGCCCTG
64 CGCCGCTAATGCCCTG
* * *
95007864 TTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCCCTGTTTTAACGGTGTTTTA-TAGAAAGC
1 TTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGTTTTAACGGCGTTTTACCA-AAAGC
*
95007928 GCCGCTAATGCTCTG
65 GCCGCTAATGCCCTG
* *
95007943 TTTTTAGCGGCGTTTTACCGAAAGTGCTC-CTAATGCTCTGTTTTTAGCGGCGTTTTA
1 TTTTTAGCGGCGTTTTACCGAAAGCGC-CGCTAATGCTCTG-TTTTAACGGCGTTTTA
95008000 GTGAAAAACG
Statistics
Matches: 122, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
78 1 0.01
79 68 0.56
80 16 0.13
81 37 0.30
ACGTcount: A:0.19, C:0.23, G:0.24, T:0.35
Consensus pattern (79 bp):
TTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGTTTTAACGGCGTTTTACCAAAAGCG
CCGCTAATGCCCTG
Found at i:95008608 original size:26 final size:26
Alignment explanation
Indices: 95008529--95008608 Score: 61
Period size: 26 Copynumber: 3.0 Consensus size: 26
95008519 TTAAAACTGA
* * *
95008529 TAAAATTACTGAAATACCTTTATAGGTG
1 TAAAATTACTGATATACC-TCA-AGGAG
* * * * *
95008557 GAAAATTTACAGATTTACCCCTAGGAG
1 TAAAA-TTACTGATATACCTCAAGGAG
95008584 TAAAATTACTGATATACCTCAAGGA
1 TAAAATTACTGATATACCTCAAGGA
95008609 TTAAGGTTGA
Statistics
Matches: 38, Mismatches: 13, Indels: 4
0.69 0.24 0.07
Matches are distributed among these distances:
26 16 0.42
27 8 0.21
28 4 0.11
29 10 0.26
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.30
Consensus pattern (26 bp):
TAAAATTACTGATATACCTCAAGGAG
Found at i:95011004 original size:42 final size:42
Alignment explanation
Indices: 95010945--95011036 Score: 132
Period size: 42 Copynumber: 2.2 Consensus size: 42
95010935 TGGCCCTTAG
* * * *
95010945 GCCCATTTTAATATCACATGTAATGTC-AATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAAT-ACAAATGAATGTATGCAA
95010987 GCCCATTTCAATATCACATGAAATACAAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACAAATGAATGTATGCAA
95011029 GCCCATTT
1 GCCCATTT
95011037 GGGGAGACTA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
41 1 0.02
42 44 0.98
ACGTcount: A:0.36, C:0.20, G:0.14, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACAAATGAATGTATGCAA
Found at i:95011209 original size:25 final size:26
Alignment explanation
Indices: 95011181--95011303 Score: 133
Period size: 26 Copynumber: 4.8 Consensus size: 26
95011171 CCTCTTTAAT
* **
95011181 AACTGGGGCA-AAGCCCTTTGCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
95011206 AACTGGGGCA-AAACCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
* * * **
95011231 AATTAGGGCATAAGCCATTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
95011257 AACTAGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
95011283 AACTGGGGCATAAGCCTTTTT
1 AACTGGGGCATAAGCCCTTTT
95011304 GCACTTCTTC
Statistics
Matches: 81, Mismatches: 16, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
25 29 0.36
26 52 0.64
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:95011292 original size:52 final size:51
Alignment explanation
Indices: 95011181--95011303 Score: 167
Period size: 52 Copynumber: 2.4 Consensus size: 51
95011171 CCTCTTTAAT
* * *
95011181 AACTGGGGCA-AAGCCCTTTGCGGTAAACTGGGGCAAAACCCTTTTCAATA
1 AACTGGGGCATAAGCCATTTTCGGTAAACTAGGGCAAAACCCTTTTCAATA
* * *
95011231 AATTAGGGCATAAGCCATTTTCGGTAAACTAGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCATTTTCGGTAAACTAGGGCA-AAACCCTTTTCAATA
*
95011283 AACTGGGGCATAAGCCTTTTT
1 AACTGGGGCATAAGCCATTTT
95011304 GCACTTCTTC
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
50 8 0.13
51 22 0.35
52 32 0.52
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (51 bp):
AACTGGGGCATAAGCCATTTTCGGTAAACTAGGGCAAAACCCTTTTCAATA
Found at i:95012136 original size:27 final size:27
Alignment explanation
Indices: 95012106--95012185 Score: 108
Period size: 27 Copynumber: 3.0 Consensus size: 27
95012096 GGGCATATTC
* *
95012106 GTCATTTTACTATACAGGGG-TATTACG
1 GTCACTTTACCATACAGGGGCT-TTACG
*
95012133 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCATACAGGGGCTTTACG
*
95012160 GTCACTTTACCCTACAGGGGCTTTAC
1 GTCACTTTACCATACAGGGGCTTTAC
95012186 AGTCTTTTTA
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
27 48 0.98
28 1 0.02
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (27 bp):
GTCACTTTACCATACAGGGGCTTTACG
Found at i:95012206 original size:27 final size:27
Alignment explanation
Indices: 95012118--95012189 Score: 110
Period size: 27 Copynumber: 2.7 Consensus size: 27
95012108 CATTTTACTA
*
95012118 TACAGGGG-TATTACGGTCACTTTACCC
1 TACAGGGGCT-TTACAGTCACTTTACCC
*
95012145 TACAGGGGCTTTACGGTCACTTTACCC
1 TACAGGGGCTTTACAGTCACTTTACCC
95012172 TACAGGGGCTTTACAGTC
1 TACAGGGGCTTTACAGTC
95012190 TTTTTACCTA
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
27 42 0.98
28 1 0.02
ACGTcount: A:0.21, C:0.26, G:0.24, T:0.29
Consensus pattern (27 bp):
TACAGGGGCTTTACAGTCACTTTACCC
Found at i:95012271 original size:27 final size:27
Alignment explanation
Indices: 95012241--95012293 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
95012231 GGGTGTTTTG
95012241 GTAAATCTATAAACCAAGGGTATTTCA
1 GTAAATCTATAAACCAAGGGTATTTCA
* * * *
95012268 GTAATTTTGTAAACCAATGGTATTTC
1 GTAAATCTATAAACCAAGGGTATTTC
95012294 CATAATTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (27 bp):
GTAAATCTATAAACCAAGGGTATTTCA
Found at i:95012299 original size:27 final size:27
Alignment explanation
Indices: 95012250--95012587 Score: 107
Period size: 27 Copynumber: 12.5 Consensus size: 27
95012240 GGTAAATCTA
95012250 TAAACCAAGGGTATTTCAGTAATTTTG
1 TAAACCAAGGGTATTTCAGTAATTTTG
*
95012277 TAAACCAATGGTATTTCCA-TAATTTT-
1 TAAACCAAGGGTATTT-CAGTAATTTTG
* *
95012303 TAGAAAGTCAAGGGTATTTCTA-TAACTTTG
1 T--AAA-CCAAGGGTATTTC-AGTAATTTTG
* * ** *
95012333 TAAATCAGGGGTATTTTGGTAATTTTA
1 TAAACCAAGGGTATTTCAGTAATTTTG
* *** * * **
95012360 CAAATTGAGGGTATTTCGGCAATTTCA
1 TAAACCAAGGGTATTTCAGTAATTTTG
* *
95012387 CAAACC-AGTGGTATTTTC-GTAATTTTA
1 TAAACCAAG-GGTA-TTTCAGTAATTTTG
* * * ** *
95012414 CAAACTAGGGGTATTTTGGTAATTTTA
1 TAAACCAAGGGTATTTCAGTAATTTTG
* *** *
95012441 CAAATTGAGGGTATTTC-GATAATTTTA
1 TAAACCAAGGGTATTTCAG-TAATTTTG
* * * *
95012468 CAAACCAAGGGTATTTTAGCAATTTTA
1 TAAACCAAGGGTATTTCAGTAATTTTG
* * * ** *
95012495 CAGA-CTAGGGTATTTTGGTAATTTTAC
1 TAAACCAAGGGTATTTCAGTAATTTT-G
* * * **
95012522 T-GATCGAGGGTATTTTGGTAATTTTG
1 TAAACCAAGGGTATTTCAGTAATTTTG
* * *
95012548 TAAACCGATGGTATTTTAGTAATTTTG
1 TAAACCAAGGGTATTTCAGTAATTTTG
*
95012575 TAAATCAAGGGTA
1 TAAACCAAGGGTA
95012588 AAACAGTAAT
Statistics
Matches: 248, Mismatches: 47, Indels: 32
0.76 0.14 0.10
Matches are distributed among these distances:
26 28 0.11
27 187 0.75
28 15 0.06
29 17 0.07
30 1 0.00
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
TAAACCAAGGGTATTTCAGTAATTTTG
Found at i:95012400 original size:54 final size:53
Alignment explanation
Indices: 95012341--95012573 Score: 216
Period size: 54 Copynumber: 4.3 Consensus size: 53
95012331 TGTAAATCAG
** * *
95012341 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGCAATTTCACAAACCA
1 GGGTATTTTGGTAATTTTACAAACCGAGGGTATTTTGGCAATTTTACAAACCA
* * * **
95012394 GTGGTATTTTCGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAATTGA
1 G-GGTATTTTGGTAATTTTACAAACCGA-GGGTATTTTGGCAATTTTACAAA-CCA
* * * * * *
95012449 GGGTATTTCGATAATTTTACAAACCAAGGGTATTTTAGCAATTTTACAGACTA
1 GGGTATTTTGGTAATTTTACAAACCGAGGGTATTTTGGCAATTTTACAAACCA
** * * **
95012502 GGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCGA
1 GGGTATTTTGGTAATTTTACAAACCGAGGGTATTTTGGCAATTTTACAAACC-A
* *
95012556 TGGTATTTTAGTAATTTT
1 GGGTATTTTGGTAATTTT
95012574 GTAAATCAAG
Statistics
Matches: 144, Mismatches: 31, Indels: 9
0.78 0.17 0.05
Matches are distributed among these distances:
53 43 0.30
54 97 0.67
55 4 0.03
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (53 bp):
GGGTATTTTGGTAATTTTACAAACCGAGGGTATTTTGGCAATTTTACAAACCA
Found at i:95012433 original size:81 final size:81
Alignment explanation
Indices: 95012339--95012573 Score: 323
Period size: 81 Copynumber: 2.9 Consensus size: 81
95012329 TTTGTAAATC
* *
95012339 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGCAATTTCACAAACCAGTGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCAGTGGTATTTT
*
95012404 CGTAATTTTACAAACT
66 AGTAATTTTACAAACT
*
95012420 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGATAATTTTACAAACCAAG-GGTATTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACC-AGTGGTATTT
* *
95012484 TAGCAATTTTACAGACT
65 TAGTAATTTTACAAACT
** * * **
95012501 A-GGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACC-GATGGTATTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCAG-TGGTATTT
95012564 TAGTAATTTT
65 TAGTAATTTT
95012574 GTAAATCAAG
Statistics
Matches: 137, Mismatches: 14, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
78 1 0.01
80 61 0.45
81 73 0.53
82 2 0.01
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCAGTGGTATTTT
AGTAATTTTACAAACT
Found at i:95012586 original size:54 final size:53
Alignment explanation
Indices: 95012230--95012587 Score: 186
Period size: 54 Copynumber: 6.6 Consensus size: 53
95012220 TCATCCTACA
* * * * * ** **
95012230 AGGGTGTTTTGGTAAATCTATAAACCAAGGGTATTTCAGTAATTTTGTAAACC
1 AGGGTATTTTAGTAATTTTATAAATCAAGGGTATTTTGGTAATTTTACAAACC
* * * * * ** *
95012283 AATGGTATTTCCA-TAATTTTTAGAAAGTCAAGGGTATTTCT-ATAACTTTGTAAATC
1 -AGGGTATTT-TAGTAA-TTTTATAAA-TCAAGGGTATTT-TGGTAATTTTACAAACC
* * ** * * *
95012339 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGCAATTTCACAAACC
1 A-GGGTATTTTAGTAATTTTATAAATCAAGGGTATTTTGGTAATTTTACAAACC
* * * **
95012393 AGTGGTATTTTCGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAATTG
1 AG-GGTATTTTAGTAATTTTATAAATC-AAGGGTATTTTGGTAATTTTACAAA-CC
* * * * * * *
95012448 AGGGTA-TTTCGATAATTTTACAAACCAAGGGTATTTTAGCAATTTTACAGACT
1 AGGGTATTTTAG-TAATTTTATAAATCAAGGGTATTTTGGTAATTTTACAAACC
* * * **
95012501 AGGGTATTTTGGTAATTTTACT-GATCGAGGGTATTTTGGTAATTTTGTAAACC
1 AGGGTATTTTAGTAATTTTA-TAAATCAAGGGTATTTTGGTAATTTTACAAACC
* *
95012554 GATGGTATTTTAGTAATTTTGTAAATCAAGGGTA
1 -AGGGTATTTTAGTAATTTTATAAATCAAGGGTA
95012588 AAACAGTAAT
Statistics
Matches: 231, Mismatches: 57, Indels: 32
0.72 0.18 0.10
Matches are distributed among these distances:
53 43 0.19
54 137 0.59
55 18 0.08
56 33 0.14
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (53 bp):
AGGGTATTTTAGTAATTTTATAAATCAAGGGTATTTTGGTAATTTTACAAACC
Found at i:95012595 original size:27 final size:26
Alignment explanation
Indices: 95012565--95012668 Score: 136
Period size: 27 Copynumber: 3.9 Consensus size: 26
95012555 ATGGTATTTT
* * *
95012565 AGTAATTTTGTAAATCAAGGGTAAAA
1 AGTAATTCTATAAATCGAGGGTAAAA
95012591 CAGTAATTCTATAAATCGAGGGTAAAA
1 -AGTAATTCTATAAATCGAGGGTAAAA
* *
95012618 TGGTAATTCTATAAATTGAGGGTAAAA
1 -AGTAATTCTATAAATCGAGGGTAAAA
95012645 AGGTAATTCTATAAATCGAGGGTA
1 A-GTAATTCTATAAATCGAGGGTA
95012669 CTTTGGTAAT
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 68 1.00
ACGTcount: A:0.42, C:0.07, G:0.21, T:0.30
Consensus pattern (26 bp):
AGTAATTCTATAAATCGAGGGTAAAA
Done.