Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 39 of 284
Found at i:13765479 original size:30 final size:30
Alignment explanation
Indices: 13765443--13765503 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
13765433 TCCTTAACTC
13765443 AAACTTTGGAAAATTTACAATTTTGCCCCT
1 AAACTTTGGAAAATTTACAATTTTGCCCCT
* * * *
13765473 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAATTTACAATTTTGCCCCT
13765503 A
1 A
13765504 GGCTGAGAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (30 bp):
AAACTTTGGAAAATTTACAATTTTGCCCCT
Found at i:13770577 original size:28 final size:28
Alignment explanation
Indices: 13770544--13770633 Score: 144
Period size: 28 Copynumber: 3.2 Consensus size: 28
13770534 CCCTTTAGGG
*
13770544 CCAATCTCATTCATATGGCCCATCAGGC
1 CCAATCACATTCATATGGCCCATCAGGC
13770572 CCAATCACATTCATATGGCCCATCAGGC
1 CCAATCACATTCATATGGCCCATCAGGC
** *
13770600 CCAATCACATTCATATGGCCTGTCAAGC
1 CCAATCACATTCATATGGCCCATCAGGC
13770628 CCAATC
1 CCAATC
13770634 TATAACAGCC
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 58 1.00
ACGTcount: A:0.28, C:0.36, G:0.13, T:0.23
Consensus pattern (28 bp):
CCAATCACATTCATATGGCCCATCAGGC
Found at i:13785803 original size:16 final size:16
Alignment explanation
Indices: 13785757--13785807 Score: 68
Period size: 16 Copynumber: 3.2 Consensus size: 16
13785747 AAATTATATA
13785757 TTCCATCATTCTAATT
1 TTCCATCATTCTAATT
* *
13785773 TTCTATC-TCTTTAATT
1 TTCCATCAT-TCTAATT
13785789 TTCCATCATTCTAATT
1 TTCCATCATTCTAATT
13785805 TTC
1 TTC
13785808 TTTCCACTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
15 1 0.03
16 27 0.93
17 1 0.03
ACGTcount: A:0.22, C:0.24, G:0.00, T:0.55
Consensus pattern (16 bp):
TTCCATCATTCTAATT
Found at i:13794597 original size:40 final size:40
Alignment explanation
Indices: 13794496--13794692 Score: 243
Period size: 40 Copynumber: 4.9 Consensus size: 40
13794486 TATTCGAATG
* * *
13794496 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGACT
* * *
13794537 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * *
13794577 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * *
13794617 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
*
13794657 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
13794693 GTTATATCTG
Statistics
Matches: 133, Mismatches: 23, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 9 0.07
40 96 0.72
41 28 0.21
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
Found at i:13797953 original size:17 final size:17
Alignment explanation
Indices: 13797931--13797964 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
13797921 ATTTCAGCCT
13797931 CAGTTAGAACCCATTCC
1 CAGTTAGAACCCATTCC
13797948 CAGTTAGAACCCATTCC
1 CAGTTAGAACCCATTCC
13797965 TTAGCATACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.35, G:0.12, T:0.24
Consensus pattern (17 bp):
CAGTTAGAACCCATTCC
Found at i:13800915 original size:20 final size:20
Alignment explanation
Indices: 13800881--13800930 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
13800871 TTTCCAGCAC
*
13800881 ATTTATTCATAAAATTTTAGA
1 ATTT-TTCATAAAATTTTACA
*
13800902 ATTTTTCATCAAATTTTACA
1 ATTTTTCATAAAATTTTACA
*
13800922 ACTTTTCAT
1 ATTTTTCAT
13800931 TTTAGTCCCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 22 0.85
21 4 0.15
ACGTcount: A:0.36, C:0.12, G:0.02, T:0.50
Consensus pattern (20 bp):
ATTTTTCATAAAATTTTACA
Found at i:13804005 original size:27 final size:27
Alignment explanation
Indices: 13803954--13804005 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
13803944 TCATAGATAG
* **
13803954 TTTGATGGGATAATAAACATGAGATTT
1 TTTGATGGGACAATAAACACAAGATTT
*
13803981 TTTGATGGGACATTAAACACAAGAT
1 TTTGATGGGACAATAAACACAAGAT
13804006 AGTCCACTGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.38, C:0.08, G:0.21, T:0.33
Consensus pattern (27 bp):
TTTGATGGGACAATAAACACAAGATTT
Found at i:13806182 original size:53 final size:54
Alignment explanation
Indices: 13806002--13806213 Score: 214
Period size: 53 Copynumber: 3.9 Consensus size: 54
13805992 ATTAGGGTTT
* ** * * *
13806002 AAGGATACCAAGTAAGACCATGCCAAGGTATGGCATTGGCAAGTTCTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAAGGC
* * * * * * *
13806056 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTCTATAAGGC
* * *
13806111 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAAGGC
** *
13806164 AAGGATACCATGTAAGACCATATCAAGACATGGAAATGGTAAGTT-TATAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAA
13806214 AGGAAAGGTA
Statistics
Matches: 127, Mismatches: 27, Indels: 9
0.78 0.17 0.06
Matches are distributed among these distances:
52 4 0.03
53 45 0.35
54 35 0.28
55 39 0.31
56 4 0.03
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAAGGC
Found at i:13814074 original size:26 final size:26
Alignment explanation
Indices: 13814045--13814097 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13814035 TAATTTCCGT
13814045 AACTGTTAAAGTTCATAAAAGATGTC
1 AACTGTTAAAGTTCATAAAAGATGTC
13814071 AACTGTTAAAGTTCATAAAAGATGTC
1 AACTGTTAAAGTTCATAAAAGATGTC
13814097 A
1 A
13814098 CTGATGAATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.43, C:0.11, G:0.15, T:0.30
Consensus pattern (26 bp):
AACTGTTAAAGTTCATAAAAGATGTC
Found at i:13817532 original size:27 final size:27
Alignment explanation
Indices: 13817486--13817684 Score: 145
Period size: 27 Copynumber: 7.4 Consensus size: 27
13817476 ATTATTGGAA
**
13817486 TACCCTCGACTTGTA-A-AATTACTAAAG
1 TACCCTCGA-TT-TACAGAATTACTAATT
* *
13817513 TACCCTTGATTTACATAATTATCGT--TT
1 TACCCTCGATTTACAGAATTA-C-TAATT
***
13817540 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTAATT
* * *
13817567 TACCCTCGATATATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTAATT
* *
13817594 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTAATT
* **
13817621 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAGAATTACTAATT
* * * * **
13817648 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAGAATTACTAATT
13817675 TACCCTCGAT
1 TACCCTCGAT
13817685 CAGTAAAATT
Statistics
Matches: 143, Mismatches: 23, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
25 2 0.01
26 4 0.03
27 135 0.94
28 1 0.01
29 1 0.01
ACGTcount: A:0.33, C:0.22, G:0.08, T:0.37
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTAATT
Found at i:13817560 original size:54 final size:54
Alignment explanation
Indices: 13817513--13817644 Score: 167
Period size: 54 Copynumber: 2.4 Consensus size: 54
13817503 ATTACTAAAG
* * * **
13817513 TACCCTTGATTTACATAATTA-TCGTTTTACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACT-ATTTTACCCTCGATTTACAGAATTACTATTT
* * * *
13817567 TACCCTCGATATATAGAATTACTATTTTACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACTATTT
13817621 TACCCTCGATTTACAAAATTACTA
1 TACCCTCGATTTACAAAATTACTA
13817645 AAATACCCTT
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
54 65 0.98
55 1 0.02
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACTATTT
Found at i:13817652 original size:54 final size:54
Alignment explanation
Indices: 13817540--13817707 Score: 169
Period size: 54 Copynumber: 3.1 Consensus size: 54
13817530 ATTATCGTTT
* * * * ***
13817540 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATATATAGAATTACTATTT
1 TACCCTTGATTTACAGAATTACCATTTTACCCTCGATATACAAAATTACTAAAA
* *
13817594 TACCCTTGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAGAATTACCATTTTACCCTCGATATACAAAATTACTAAAA
* * *** *
13817648 TACCCTTGGTTTACAAAATTACCAAAATACCCTCGATCAGT--AAAATTACCAAAA
1 TACCCTTGATTTACAGAATTACCATTTTACCCTCGAT-A-TACAAAATTACTAAAA
13817702 TACCCT
1 TACCCT
13817708 GGTCTGTAAA
Statistics
Matches: 95, Mismatches: 17, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
54 94 0.99
56 1 0.01
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.34
Consensus pattern (54 bp):
TACCCTTGATTTACAGAATTACCATTTTACCCTCGATATACAAAATTACTAAAA
Found at i:13817679 original size:81 final size:81
Alignment explanation
Indices: 13817500--13817680 Score: 184
Period size: 81 Copynumber: 2.2 Consensus size: 81
13817490 CTCGACTTGT
* * * * **
13817500 AAAATTACTAAAGTACCCTTGATTTACATAATTATCGTTTTACCCTCGATTTACAGAATTACCGT
1 AAAATTACTAAAATACCCTTGATTTACAGAATTATCATTTTACCCTCGATTTACAAAATTACCAA
** *
13817565 TTTACCCTCGATATAT
66 AATACCCTCGATATAC
* *** *
13817581 AGAATTACTATTTTACCCTTGATTTACAGAATTA-CTATTTTACCCTCGATTTACAAAATTACTA
1 AAAATTACTAAAATACCCTTGATTTACAGAATTATC-ATTTTACCCTCGATTTACAAAATTACCA
* * *
13817645 AAATACCCTTGGTTTAC
65 AAATACCCTCGATATAC
*
13817662 AAAATTACCAAAATACCCT
1 AAAATTACTAAAATACCCT
13817681 CGATCAGTAA
Statistics
Matches: 78, Mismatches: 21, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
80 1 0.01
81 77 0.99
ACGTcount: A:0.35, C:0.21, G:0.07, T:0.37
Consensus pattern (81 bp):
AAAATTACTAAAATACCCTTGATTTACAGAATTATCATTTTACCCTCGATTTACAAAATTACCAA
AATACCCTCGATATAC
Found at i:13817692 original size:27 final size:26
Alignment explanation
Indices: 13817621--13817867 Score: 192
Period size: 27 Copynumber: 9.2 Consensus size: 26
13817611 ATTACTATTT
** *
13817621 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCT-GATTTGTAAAATTACCAAAA
* **
13817648 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCC-TGATTTGTAAAATTACCAAAA
**
13817675 TACCCTCGATCAGTAAAATTACCAAAA
1 TACCCT-GATTTGTAAAATTACCAAAA
* * * *
13817702 TACCCTGGTCTGT-AAATTGCTAAAA
1 TACCCTGATTTGTAAAATTACCAAAA
*
13817727 TATCCCTGGTTTGTAAAATTACCAAAA
1 TA-CCCTGATTTGTAAAATTACCAAAA
13817754 TACCCCT-AGTTTGTAAAATTACCAAAA
1 TA-CCCTGA-TTTGTAAAATTACCAAAA
* * * *
13817781 TAGCACTGGTTTGTGAAATTACCGAAA
1 TA-CCCTGATTTGTAAAATTACCAAAA
* *
13817808 TACTCTCAATTTGTAAAATTACCAAAA
1 TACCCT-GATTTGTAAAATTACCAAAA
* ** *
13817835 TATCCCTAATTTACAAAATTACAAAAA
1 TA-CCCTGATTTGTAAAATTACCAAAA
13817862 TACCCT
1 TACCCT
13817868 TGACTTTCTA
Statistics
Matches: 182, Mismatches: 30, Indels: 17
0.79 0.13 0.07
Matches are distributed among these distances:
25 12 0.07
26 23 0.13
27 143 0.79
28 4 0.02
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (26 bp):
TACCCTGATTTGTAAAATTACCAAAA
Found at i:13817745 original size:79 final size:81
Alignment explanation
Indices: 13817636--13817841 Score: 231
Period size: 79 Copynumber: 2.5 Consensus size: 81
13817626 TCGATTTACA
**
13817636 AAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGA-TCAGTAAAATTACCAA
1 AAATTACTAAAATACCC-TGGTTTGTAAAATTACCAAAATACCCTCGAGTCAGTAAAATTACCAA
*
13817700 AATA-CCCTGGTCTGT-
65 AATAGCACTGGTCTGTG
* * **
13817715 AAATTGCTAAAATATCCCTGGTTTGTAAAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAA
1 AAATTACTAAAATA-CCCTGGTTTGTAAAATTACCAAAATACCCTCGAGTCAGTAAAATTACCAA
*
13817779 AATAGCACTGGTTTGTG
65 AATAGCACTGGTCTGTG
** * **
13817796 AAATTACCGAAATACTCTCAATTTGTAAAATTACCAAAATATCCCT
1 AAATTACTAAAATACCCT-GGTTTGTAAAATTACCAAAATA-CCCT
13817842 AATTTACAAA
Statistics
Matches: 106, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
78 2 0.02
79 55 0.52
80 15 0.14
81 31 0.29
82 3 0.03
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (81 bp):
AAATTACTAAAATACCCTGGTTTGTAAAATTACCAAAATACCCTCGAGTCAGTAAAATTACCAAA
ATAGCACTGGTCTGTG
Found at i:13817917 original size:27 final size:27
Alignment explanation
Indices: 13817878--13817929 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
13817868 TGACTTTCTA
13817878 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
*
13817905 AAAATTACT-GAAATACCCTTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
13817930 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:13818047 original size:27 final size:27
Alignment explanation
Indices: 13817970--13818047 Score: 79
Period size: 27 Copynumber: 2.9 Consensus size: 27
13817960 AAATGACTAA
* *
13817970 AATACCCCTAT-TAGGTAAAAAGACCGT
1 AATACCCCTGTAT-GGTAAAATGACCGT
* * *
13817997 AA-AGACCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTATGGTAAAATGACCGT
13818024 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTATGGTAAAATGAC
13818048 AAATACGCCC
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
26 1 0.03
27 38 0.95
28 1 0.03
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACCGT
Found at i:13818938 original size:24 final size:25
Alignment explanation
Indices: 13818856--13818949 Score: 136
Period size: 25 Copynumber: 3.8 Consensus size: 25
13818846 AGGAAGTGCT
* *
13818856 AAAAGGGCTATGCCCCAGTTTATCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
* *
13818881 AAAAGGGCTTTACCCCAGTTTACCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
13818906 AAAAGGGCTTTGCCCTAGTTTATC-
1 AAAAGGGCTTTGCCCCAGTTTATCA
13818930 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
13818950 ATTAAAAGAG
Statistics
Matches: 61, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
24 19 0.31
25 42 0.69
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:13818962 original size:24 final size:24
Alignment explanation
Indices: 13818856--13818962 Score: 135
Period size: 25 Copynumber: 4.4 Consensus size: 24
13818846 AGGAAGTGCT
*
13818856 AAAAGGGCTATGCCCCAGTTTATC
1 AAAAGGGCTTTGCCCCAGTTTATC
* *
13818880 GAAAAGGGCTTTACCCCAGTTTACC
1 -AAAAGGGCTTTGCCCCAGTTTATC
*
13818905 AAAAAGGGCTTTGCCCTAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTATC
*
13818930 AAAAGGGCTTTGCCCCAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATC
13818953 AAAAGAGGCT
1 AAAAG-GGCT
13818963 AGGCCTCTAG
Statistics
Matches: 72, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
23 9 0.12
24 21 0.29
25 42 0.58
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:13819235 original size:31 final size:30
Alignment explanation
Indices: 13819168--13819245 Score: 138
Period size: 30 Copynumber: 2.6 Consensus size: 30
13819158 CGTTTACAGT
*
13819168 AAAGGCTTCGGCCCAATGATATGATTTATA
1 AAAGGCTTCGGCCCAGTGATATGATTTATA
13819198 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTAT-A
13819229 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
13819246 AACCGTTAAA
Statistics
Matches: 46, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
30 28 0.61
31 18 0.39
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.27
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATA
Found at i:13822789 original size:40 final size:40
Alignment explanation
Indices: 13822702--13823002 Score: 340
Period size: 40 Copynumber: 7.6 Consensus size: 40
13822692 CATGATTACT
* * * *
13822702 CATATGTGCCCCTGTTTGTAC-TTGATACCCTTGATTGCA
1 CATACGTGCCCCTATTTGTACTTTGGTACCCCTGATTGCA
* * *
13822741 GATGCGTGCCCCTATTTGTACTTTGGTGCCCCTGATTGCA
1 CATACGTGCCCCTATTTGTACTTTGGTACCCCTGATTGCA
* * * *
13822781 CATACGTGCCCTTGTTTGTACTTTGATACCCCTAATTGCA
1 CATACGTGCCCCTATTTGTACTTTGGTACCCCTGATTGCA
*
13822821 CATACGTGCCCCTGTTTGTACTTTGGTACCCCTGATTGCA
1 CATACGTGCCCCTATTTGTACTTTGGTACCCCTGATTGCA
* *
13822861 CATAAGTGCCCCTATTTATA-TTTCGGTACCCCTGATTGCA
1 CATACGTGCCCCTATTTGTACTTT-GGTACCCCTGATTGCA
* ** *
13822901 CATATGTGTCCCC-ATTTGTACTTCAGTACCCCTGATTACA
1 CATACGTG-CCCCTATTTGTACTTTGGTACCCCTGATTGCA
** *
13822941 CATACGTGCCCCTATTTGTACTTCAGTACCCCTGACTGCA
1 CATACGTGCCCCTATTTGTACTTTGGTACCCCTGATTGCA
* * *
13822981 -ATACATGCCCTTGTTTGTACTT
1 CATACGTGCCCCTATTTGTACTT
13823003 CGATATCTCT
Statistics
Matches: 226, Mismatches: 31, Indels: 10
0.85 0.12 0.04
Matches are distributed among these distances:
39 43 0.19
40 177 0.78
41 6 0.03
ACGTcount: A:0.19, C:0.29, G:0.17, T:0.36
Consensus pattern (40 bp):
CATACGTGCCCCTATTTGTACTTTGGTACCCCTGATTGCA
Found at i:13822854 original size:20 final size:20
Alignment explanation
Indices: 13822746--13822854 Score: 74
Period size: 20 Copynumber: 5.5 Consensus size: 20
13822736 TTGCAGATGC
*
13822746 GTGCCCCTATTTGTACTTTG
1 GTGCCCCTGTTTGTACTTTG
* * * **
13822766 GTGCCCCTGATTGCACATAC
1 GTGCCCCTGTTTGTACTTTG
*
13822786 GTGCCCTTGTTTGTACTTTG
1 GTGCCCCTGTTTGTACTTTG
* * ** * * **
13822806 ATACCCCTAATTGCACATAC
1 GTGCCCCTGTTTGTACTTTG
13822826 GTGCCCCTGTTTGTACTTTG
1 GTGCCCCTGTTTGTACTTTG
*
13822846 GTACCCCTG
1 GTGCCCCTG
13822855 ATTGCACATA
Statistics
Matches: 59, Mismatches: 30, Indels: 0
0.66 0.34 0.00
Matches are distributed among these distances:
20 59 1.00
ACGTcount: A:0.15, C:0.29, G:0.19, T:0.37
Consensus pattern (20 bp):
GTGCCCCTGTTTGTACTTTG
Found at i:13822872 original size:20 final size:20
Alignment explanation
Indices: 13822766--13822873 Score: 74
Period size: 20 Copynumber: 5.4 Consensus size: 20
13822756 TTGTACTTTG
13822766 GTGCCCCTGATTGCACATAC
1 GTGCCCCTGATTGCACATAC
* * * **
13822786 GTGCCCTTGTTTGTAC-TTT
1 GTGCCCCTGATTGCACATAC
* *
13822805 GATACCCCTAATTGCACATAC
1 G-TGCCCCTGATTGCACATAC
* * * **
13822826 GTGCCCCTGTTTGTACTTTG
1 GTGCCCCTGATTGCACATAC
* *
13822846 GTACCCCTGATTGCACATAA
1 GTGCCCCTGATTGCACATAC
13822866 GTGCCCCT
1 GTGCCCCT
13822874 ATTTATATTT
Statistics
Matches: 60, Mismatches: 26, Indels: 4
0.67 0.29 0.04
Matches are distributed among these distances:
19 2 0.03
20 56 0.93
21 2 0.03
ACGTcount: A:0.18, C:0.31, G:0.19, T:0.33
Consensus pattern (20 bp):
GTGCCCCTGATTGCACATAC
Found at i:13822972 original size:20 final size:20
Alignment explanation
Indices: 13822910--13822973 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
13822900 ACATATGTGT
13822910 CCCC-ATTTGTACTTCAGTA
1 CCCCTATTTGTACTTCAGTA
** * *
13822929 CCCCTGA-TTACACAT-ACGTG
1 CCCCT-ATTTGTACTTCA-GTA
13822949 CCCCTATTTGTACTTCAGTA
1 CCCCTATTTGTACTTCAGTA
13822969 CCCCT
1 CCCCT
13822974 GACTGCAATA
Statistics
Matches: 32, Mismatches: 8, Indels: 9
0.65 0.16 0.18
Matches are distributed among these distances:
19 6 0.19
20 24 0.75
21 2 0.06
ACGTcount: A:0.20, C:0.36, G:0.11, T:0.33
Consensus pattern (20 bp):
CCCCTATTTGTACTTCAGTA
Found at i:13831299 original size:28 final size:27
Alignment explanation
Indices: 13831244--13831359 Score: 153
Period size: 28 Copynumber: 4.2 Consensus size: 27
13831234 AGCATGGCTG
* *
13831244 CCAGAACAGATA-TTGTGACAGAGTCA
1 CCAGAACAGATATTTGTGGCAGAGCCA
*
13831270 CCAGATACAGATATTTGTGGCAGTGCCA
1 CCAGA-ACAGATATTTGTGGCAGAGCCA
*
13831298 CCAGAATCAGATATTTGGGGCAGAGCCA
1 CCAGAA-CAGATATTTGTGGCAGAGCCA
*
13831326 CCAGAAACAGATATTTGTGGCATAGCCA
1 CCAG-AACAGATATTTGTGGCAGAGCCA
13831354 CCAGAA
1 CCAGAA
13831360 TGCTTCCTCT
Statistics
Matches: 79, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
26 5 0.06
27 10 0.13
28 62 0.78
29 2 0.03
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.20
Consensus pattern (27 bp):
CCAGAACAGATATTTGTGGCAGAGCCA
Found at i:13843690 original size:43 final size:43
Alignment explanation
Indices: 13843641--13843796 Score: 231
Period size: 43 Copynumber: 3.6 Consensus size: 43
13843631 TAGAATTTTT
* *
13843641 GATATGTGATTACGTGTAAGACCACGTTTGGGGCATTGGCATC
1 GATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCATC
* * *
13843684 GATATGTGATTATGTGTAAGGCCACATCTGGGACATTGGCATC
1 GATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCATC
* *
13843727 GATATATGATTACGTGTAAGACCATGTCTGGGACATTGGCATC
1 GATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCATC
* *
13843770 AATATGTGATTACGAGTAAGACCACGT
1 GATATGTGATTACGTGTAAGACCACGT
13843797 TTAATGCGTT
Statistics
Matches: 99, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 99 1.00
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (43 bp):
GATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCATC
Found at i:13843813 original size:86 final size:86
Alignment explanation
Indices: 13843641--13843823 Score: 224
Period size: 86 Copynumber: 2.1 Consensus size: 86
13843631 TAGAATTTTT
* * * * * * *
13843641 GATATGTGATTACGTGTAAGACCACGTTTGGGGCATTGGCATCGATATGTGATTATGTGTAAGGC
1 GATATATGATTACGTGTAAGACCACGTCTGGGACATTGGCATCAATATGTGATTACGAGTAAGAC
* *
13843706 CACATCTGGGACATTGGCATC
66 CACATCTAGGACATTGCCATC
*
13843727 GATATATGATTACGTGTAAGACCATGTCTGGGACATTGGCATCAATATGTGATTACGAGTAAGAC
1 GATATATGATTACGTGTAAGACCACGTCTGGGACATTGGCATCAATATGTGATTACGAGTAAGAC
* * * *
13843792 CACGTTTAATG-CGTTGCCATC
66 CACATCT-AGGACATTGCCATC
13843813 GATATATGATT
1 GATATATGATT
13843824 CTGATATGTG
Statistics
Matches: 82, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
86 81 0.99
87 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (86 bp):
GATATATGATTACGTGTAAGACCACGTCTGGGACATTGGCATCAATATGTGATTACGAGTAAGAC
CACATCTAGGACATTGCCATC
Found at i:13843823 original size:43 final size:43
Alignment explanation
Indices: 13843641--13843823 Score: 152
Period size: 43 Copynumber: 4.3 Consensus size: 43
13843631 TAGAATTTTT
* * * * * *
13843641 GATATGTGATTACGTGTAAGACCACGTTTGGGGCATTGGCATC
1 GATATATGATTACGAGTAAGACCACGTCTAGGACATTGCCATC
* * * * * * *
13843684 GATATGTGATTATGTGTAAGGCCACATCTGGGACATTGGCATC
1 GATATATGATTACGAGTAAGACCACGTCTAGGACATTGCCATC
* * * *
13843727 GATATATGATTACGTGTAAGACCATGTCTGGGACATTGGCATC
1 GATATATGATTACGAGTAAGACCACGTCTAGGACATTGCCATC
* * * * *
13843770 AATATGTGATTACGAGTAAGACCACGTTTAATG-CGTTGCCATC
1 GATATATGATTACGAGTAAGACCACGTCT-AGGACATTGCCATC
13843813 GATATATGATT
1 GATATATGATT
13843824 CTGATATGTG
Statistics
Matches: 118, Mismatches: 21, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
43 117 0.99
44 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (43 bp):
GATATATGATTACGAGTAAGACCACGTCTAGGACATTGCCATC
Found at i:13843879 original size:56 final size:56
Alignment explanation
Indices: 13843782--13843960 Score: 214
Period size: 56 Copynumber: 3.2 Consensus size: 56
13843772 TATGTGATTA
** * *
13843782 CGAGTAAGACCACGTTTAATGCGTTGCCATCGATATATGATTCTGATATGTGTGTG
1 CGAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATTCTGATATGTGTGTG
* * * * * *
13843838 CAAGTAAGACCACATTTAGTATGTTGGCATCAATATGTGATTTTGTTATGTGTGTG
1 CGAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATTCTGATATGTGTGTG
* * ** * *
13843894 CGAGTAAGACCATGTTTAATATGTTGGCATCGATAGGTGATTCCAATATGTGTTTA
1 CGAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATTCTGATATGTGTGTG
13843950 CGAGTAAGACC
1 CGAGTAAGACC
13843961 CTGTCTGGGA
Statistics
Matches: 101, Mismatches: 22, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
56 101 1.00
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.35
Consensus pattern (56 bp):
CGAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATTCTGATATGTGTGTG
Found at i:13857231 original size:30 final size:30
Alignment explanation
Indices: 13857197--13857258 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
13857187 TTCTCGAGCC
*
13857197 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGAAAAAGTT
* * * *
13857227 TAGGGGCAAAATTGTAATTTTGAAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGAAAAAGTT
13857257 TA
1 TA
13857259 AGTTAAGGAC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.44, C:0.03, G:0.24, T:0.29
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAAATATGAAAAAGTT
Found at i:13872683 original size:17 final size:17
Alignment explanation
Indices: 13872657--13872694 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
13872647 TTTTACAAGG
13872657 AAAA-AAATGAATCATA
1 AAAACAAATGAATCATA
*
13872673 AAAACAAATGAATCTTA
1 AAAACAAATGAATCATA
13872690 AAAAC
1 AAAAC
13872695 TTAATAAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 4 0.20
17 16 0.80
ACGTcount: A:0.66, C:0.11, G:0.05, T:0.18
Consensus pattern (17 bp):
AAAACAAATGAATCATA
Found at i:13877124 original size:92 final size:91
Alignment explanation
Indices: 13876967--13877175 Score: 260
Period size: 92 Copynumber: 2.3 Consensus size: 91
13876957 TTGATTTTAG
** *
13876967 TAAATTCATATAAGAACAATTTATTATTGAGAATTTTATGAAATTATATATCACTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATAACTATTAAATTAT
* *
13877032 ATTTAAT-ATTAATTATTTTAAATTGTA
65 ATGTAATAATT-ATTATTTTAAATTATA
* *
13877059 TAAATTCATATAAGAAAATTTATTATCAAGTATTTTATGAAATT-TAATATTAATTATTAAATTA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTAT-ATA-TAACTATTAAATTA
*
13877123 TATGTAATAATTATTATTTTAGATTATA
64 TATGTAATAATTATTATTTTAAATTATA
* * * *
13877151 CAAATTCATAAAATATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
13877176 GTTATAATTA
Statistics
Matches: 102, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
90 1 0.01
91 28 0.27
92 70 0.69
93 3 0.03
ACGTcount: A:0.45, C:0.04, G:0.05, T:0.46
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATAACTATTAAATTATA
TGTAATAATTATTATTTTAAATTATA
Found at i:13877425 original size:16 final size:16
Alignment explanation
Indices: 13877404--13877472 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
13877394 GATTAGCTAT
13877404 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
13877420 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
13877437 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
13877453 TACGCCTCTAATCCAA
1 TACACCTCTAATCCAA
13877469 TACA
1 TACA
13877473 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.36, C:0.38, G:0.01, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:13877446 original size:33 final size:32
Alignment explanation
Indices: 13877404--13877472 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
13877394 GATTAGCTAT
13877404 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
*
13877437 TACACCTCTAATCCAATACGCCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
13877469 TACA
1 TACA
13877473 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 8 0.23
33 27 0.77
ACGTcount: A:0.36, C:0.38, G:0.01, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:13881889 original size:76 final size:76
Alignment explanation
Indices: 13881796--13881948 Score: 288
Period size: 76 Copynumber: 2.0 Consensus size: 76
13881786 ATACTCGTGA
*
13881796 TAATTGTTTGATAATATGTCAAATTGTGTGATATACTTGGAAAATGTGAAATACTACCGAGTATC
1 TAATTGTTTGATAATATGTCAAATTATGTGATATACTTGGAAAATGTGAAATACTACCGAGTATC
13881861 GGTATCGGCAT
66 GGTATCGGCAT
*
13881872 TAATTGTTTGTTAATATGTCAAATTATGTGATATACTTGGAAAATGTGAAATACTACCGAGTATC
1 TAATTGTTTGATAATATGTCAAATTATGTGATATACTTGGAAAATGTGAAATACTACCGAGTATC
13881937 GGTATCGGCAT
66 GGTATCGGCAT
13881948 T
1 T
13881949 CCGTAGAAGA
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
76 75 1.00
ACGTcount: A:0.33, C:0.10, G:0.20, T:0.37
Consensus pattern (76 bp):
TAATTGTTTGATAATATGTCAAATTATGTGATATACTTGGAAAATGTGAAATACTACCGAGTATC
GGTATCGGCAT
Found at i:13882104 original size:46 final size:46
Alignment explanation
Indices: 13882048--13882409 Score: 301
Period size: 46 Copynumber: 7.8 Consensus size: 46
13882038 TATTTGGGCA
13882048 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *** * * *
13882094 TCTGAACTCGTTGAGTTCAGTCCGAGTTCGAGAGATGTAACTACGCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-TGCGAATG
*
13882141 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *** * * *
13882187 TCTGAACTCGTTGAGTTCAGTCCGAGTTCGAGAGATGTAACTACGCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-TGCGAATG
*
13882234 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
13882280 TCTGAACTCGTTGAGTTGAGTCCGAGTTCA---A-GAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G
* * * *
13882325 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCATTTGTGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* ** *
13882373 CCCGGCCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
13882410 GTGGGTTACA
Statistics
Matches: 246, Mismatches: 49, Indels: 42
0.73 0.15 0.12
Matches are distributed among these distances:
42 3 0.01
43 6 0.02
44 8 0.03
45 3 0.01
46 120 0.49
47 88 0.36
48 3 0.01
49 8 0.03
50 4 0.02
51 3 0.01
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:13882157 original size:47 final size:46
Alignment explanation
Indices: 13882100--13882356 Score: 252
Period size: 47 Copynumber: 5.5 Consensus size: 46
13882090 AATGTCTGAA
*
13882100 CTCGTTGAGTTCAGTCCGAGTTCGAGAGATGTAACTACGCATCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTC-AGAGATGTAACTACGCATCCGAG
*** * * * * *
13882147 CTCGTTGAGTTGAGTCCGAGTTCACTTATG-GA-TGCGAATGTCTGAA
1 CTCGTTGAGTTGAGTCCGAGTTCAGAGATGTAACTACGCA--TCCGAG
*
13882193 CTCGTTGAGTTCAGTCCGAGTTCGAGAGATGTAACTACGCATCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTC-AGAGATGTAACTACGCATCCGAG
*** * * * * *
13882240 CTCGTTGAGTTGAGTCCGAGTTCACTTATG-GA-TGCGAATGTCTGAA
1 CTCGTTGAGTTGAGTCCGAGTTCAGAGATGTAACTACGCA--TCCGAG
*
13882286 CTCGTTGAGTTGAGTCCGAGTTCAAGAGATGTAACTAGGCATCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTC-AGAGATGTAACTACGCATCCGAG
13882333 CTCGTTGAGTTGAGTCCGAGTTCA
1 CTCGTTGAGTTGAGTCCGAGTTCA
13882357 TTTGTGGATG
Statistics
Matches: 164, Mismatches: 36, Indels: 21
0.74 0.16 0.10
Matches are distributed among these distances:
44 8 0.05
45 2 0.01
46 62 0.38
47 83 0.51
48 2 0.01
49 7 0.04
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
CTCGTTGAGTTGAGTCCGAGTTCAGAGATGTAACTACGCATCCGAG
Found at i:13882204 original size:93 final size:93
Alignment explanation
Indices: 13882045--13882402 Score: 608
Period size: 93 Copynumber: 3.8 Consensus size: 93
13882035 GGATATTTGG
*
13882045 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
13882110 TCAGTCCGAGTTCGAGAGATGTAACTAC
66 TCAGTCCGAGTTCGAGAGATGTAACTAC
13882138 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
13882203 TCAGTCCGAGTTCGAGAGATGTAACTAC
66 TCAGTCCGAGTTCGAGAGATGTAACTAC
13882231 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
* * *
13882296 TGAGTCCGAGTTCAAGAGATGTAACTAG
66 TCAGTCCGAGTTCGAGAGATGTAACTAC
* * * * * **
13882324 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCATTTGTGGATGCGAACGCCCGGCCTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
*
13882389 TGAGTCCGAGTTCG
66 TCAGTCCGAGTTCG
13882403 CTTATGGGTG
Statistics
Matches: 253, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 253 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
TCAGTCCGAGTTCGAGAGATGTAACTAC
Found at i:13896976 original size:72 final size:72
Alignment explanation
Indices: 13896859--13897218 Score: 720
Period size: 72 Copynumber: 5.0 Consensus size: 72
13896849 TCGATTGAAT
13896859 GAAGACAATACCTAAGGAAAAATCCACCTAGACTGTACTTGTTATTCTGGCTCCGAATCAGACGA
1 GAAGACAATACCTAAGGAAAAATCCACCTAGACTGTACTTGTTATTCTGGCTCCGAATCAGACGA
13896924 TTTATTC
66 TTTATTC
13896931 GAAGACAATACCTAAGGAAAAATCCACCTAGACTGTACTTGTTATTCTGGCTCCGAATCAGACGA
1 GAAGACAATACCTAAGGAAAAATCCACCTAGACTGTACTTGTTATTCTGGCTCCGAATCAGACGA
13896996 TTTATTC
66 TTTATTC
13897003 GAAGACAATACCTAAGGAAAAATCCACCTAGACTGTACTTGTTATTCTGGCTCCGAATCAGACGA
1 GAAGACAATACCTAAGGAAAAATCCACCTAGACTGTACTTGTTATTCTGGCTCCGAATCAGACGA
13897068 TTTATTC
66 TTTATTC
13897075 GAAGACAATACCTAAGGAAAAATCCACCTAGACTGTACTTGTTATTCTGGCTCCGAATCAGACGA
1 GAAGACAATACCTAAGGAAAAATCCACCTAGACTGTACTTGTTATTCTGGCTCCGAATCAGACGA
13897140 TTTATTC
66 TTTATTC
13897147 GAAGACAATACCTAAGGAAAAATCCACCTAGACTGTACTTGTTATTCTGGCTCCGAATCAGACGA
1 GAAGACAATACCTAAGGAAAAATCCACCTAGACTGTACTTGTTATTCTGGCTCCGAATCAGACGA
13897212 TTTATTC
66 TTTATTC
13897219 ATTTAACTTG
Statistics
Matches: 288, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 288 1.00
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (72 bp):
GAAGACAATACCTAAGGAAAAATCCACCTAGACTGTACTTGTTATTCTGGCTCCGAATCAGACGA
TTTATTC
Found at i:13901773 original size:47 final size:44
Alignment explanation
Indices: 13901663--13901786 Score: 133
Period size: 47 Copynumber: 2.7 Consensus size: 44
13901653 TATTGTGAGA
**
13901663 TAGTGTAAGACATGTCTGGGACATGCATCGACCACATTTTGAGAGC
1 TAGTGTAAGACATGTCTGGGACATGCATC-A-CACATTGAGAGAGC
* *
13901709 CAGTGTAAGACCGTGTCTGGGACATGGCATCA-ACATTGAGATGAATGC
1 TAGTGTAAGA-CATGTCTGGGACAT-GCATCACACATTGAGA-G-A-GC
*
13901757 TAGTGTAAGATATGTCTGGGACATGCATCA
1 TAGTGTAAGACATGTCTGGGACATGCATCA
13901787 GCCTCGAGAC
Statistics
Matches: 66, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
45 7 0.11
46 16 0.24
47 27 0.41
48 16 0.24
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (44 bp):
TAGTGTAAGACATGTCTGGGACATGCATCACACATTGAGAGAGC
Found at i:13901810 original size:46 final size:46
Alignment explanation
Indices: 13901709--13901872 Score: 156
Period size: 46 Copynumber: 3.5 Consensus size: 46
13901699 TTTTGAGAGC
* * * * * *
13901709 CAGTGTAAGACCGTGTCTGGGACATGGCATCAACATTGAGATG-AATG
1 CAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGAGACGTAATT
*
13901756 CTAGTGTAAGATATGTCTGGGACATGCATCAGCCTCGAGACGTAATT
1 C-AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGACGTAATT
* * * *
13901803 CAGTGTAAGACATGTTTGAGACATGCATC-GGCTACGAGACGT--GT
1 CAGTGTAAGACATGTCTGGGACATGCATCAGCCT-CGAGACGTAATT
13901847 CAGTGTAAGACCATGTCTGGGACATG
1 CAGTGTAAGA-CATGTCTGGGACATG
13901873 GGATCGGCAC
Statistics
Matches: 99, Mismatches: 14, Indels: 10
0.80 0.11 0.08
Matches are distributed among these distances:
44 11 0.11
45 16 0.16
46 46 0.46
47 17 0.17
48 9 0.09
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (46 bp):
CAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGACGTAATT
Found at i:13909439 original size:46 final size:45
Alignment explanation
Indices: 13909354--13909515 Score: 177
Period size: 46 Copynumber: 3.5 Consensus size: 45
13909344 GTGAGAGCCA
* * *
13909354 GTGTAAGACCATGTTCGGGACATGGCATCGGCATTGAGACGATTGTTC
1 GTGTAAGA-CATGTTTGGGACAT-GCATCGGCCTCGAGACG-TTGTTC
* *
13909402 GTGTAAGACATGTTTAGGACATGCATCGGCCTCGAGACGTAAG-TC
1 GTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGACGT-TGTTC
*
13909447 AGTGTAAGACATGTTTGGGACATGCATCGG-CTACGAGACG-TGTTA
1 -GTGTAAGACATGTTTGGGACATGCATCGGCCT-CGAGACGTTGTTC
*
13909492 GTGTAAGACTATGTCTGGGACATG
1 GTGTAAGAC-ATGTTTGGGACATG
13909516 GCATTGGCAC
Statistics
Matches: 100, Mismatches: 9, Indels: 13
0.82 0.07 0.11
Matches are distributed among these distances:
44 10 0.10
45 19 0.19
46 51 0.51
47 12 0.12
48 8 0.08
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.27
Consensus pattern (45 bp):
GTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGACGTTGTTC
Found at i:13910739 original size:21 final size:22
Alignment explanation
Indices: 13910700--13910740 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
13910690 TCAAATTGGT
*
13910700 CACACGGGCGTGTTGCCCCTTC
1 CACACGGCCGTGTTGCCCCTTC
13910722 CACACGGCCGTG-TGCCCCT
1 CACACGGCCGTGTTGCCCCT
13910741 GTGTCAAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.10, C:0.44, G:0.27, T:0.20
Consensus pattern (22 bp):
CACACGGCCGTGTTGCCCCTTC
Found at i:13920242 original size:18 final size:20
Alignment explanation
Indices: 13920206--13920252 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
13920196 AGTTGTAAGT
13920206 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
13920226 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
13920245 ATGATATA
1 AT-ATATA
13920253 ACCTGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:13922047 original size:40 final size:40
Alignment explanation
Indices: 13922001--13922156 Score: 233
Period size: 40 Copynumber: 3.9 Consensus size: 40
13921991 GATTTAACCA
13922001 GATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCG
1 GATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCG
13922041 GATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCG
1 GATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCG
* * * *
13922081 GATATAATC-GCTAGCATAAATGCCTTCGGGTCATAGCCCG
1 GATATAA-CAACTCGCACAAATGCCTTCGGGTCTTAGCCCG
* * *
13922121 GATATAGCAACTCGCACGAATGCCTTCGGATCTTAG
1 GATATAACAACTCGCACAAATGCCTTCGGGTCTTAG
13922157 TCTGGTTATC
Statistics
Matches: 103, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCG
Found at i:13929654 original size:40 final size:40
Alignment explanation
Indices: 13929608--13929726 Score: 159
Period size: 40 Copynumber: 3.0 Consensus size: 40
13929598 CGGGATTTAA
13929608 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
* * * *
13929648 CCGGATATAATC-GCTAGCATAAATGCCTTCGGGTCATAGC
1 CCGGATATAA-CAACTCGCACAAATGCCTTCGGGTCTTAGC
* * *
13929688 CCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAG
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAG
13929727 TCTGGTTATC
Statistics
Matches: 66, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
39 1 0.02
40 64 0.97
41 1 0.02
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
Found at i:13931711 original size:32 final size:32
Alignment explanation
Indices: 13931665--13931727 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
13931655 GGGCTGTCAC
*
13931665 AGTGCAGGCCACTACGTGCACCGGATTGATAA
1 AGTGCAGGCCACTACGTGCACCAGATTGATAA
* *
13931697 AGTGCAGGCTACTACGTGTACCAGATTGATA
1 AGTGCAGGCCACTACGTGCACCAGATTGATA
13931728 GGTCGCATGT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.22
Consensus pattern (32 bp):
AGTGCAGGCCACTACGTGCACCAGATTGATAA
Found at i:13931897 original size:50 final size:50
Alignment explanation
Indices: 13931696--13931911 Score: 209
Period size: 50 Copynumber: 4.3 Consensus size: 50
13931686 CGGATTGATA
*
13931696 AAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACT
1 AAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACT
* ** * * * * * * *
13931746 AAGTGAAGGCTACTTTGCGTTCCCG-TTAACTTCGATCACATGTGTAATACT
1 AAGTGCAGGCTACTACGTGTACCAGATTGA--TAGGTCACATGTGTAGTACT
* ** * * * *
13931797 AAGTGTAGGCTACTACGTGTATGAGATGGATAAGTCACGTGTGTATTACT
1 AAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACT
* * *
13931847 AAGTACAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGCAGTACT
1 AAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACT
*
13931897 AAGTGCAGGTTACTA
1 AAGTGCAGGCTACTA
13931912 TTGATACGTG
Statistics
Matches: 125, Mismatches: 38, Indels: 6
0.74 0.22 0.04
Matches are distributed among these distances:
49 3 0.02
50 87 0.70
51 33 0.26
52 2 0.02
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (50 bp):
AAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACT
Found at i:13936449 original size:39 final size:39
Alignment explanation
Indices: 13936327--13936587 Score: 311
Period size: 39 Copynumber: 6.6 Consensus size: 39
13936317 GCTCCTCGTT
* *
13936327 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
13936367 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
*
13936407 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGTA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
13936446 CAAATGCCTTCGGGCTTAGCCCGG-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
13936484 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
* * *
13936523 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC-TCGCA
13936564 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
13936588 CATCATTCAA
Statistics
Matches: 200, Mismatches: 13, Indels: 17
0.87 0.06 0.07
Matches are distributed among these distances:
38 37 0.19
39 91 0.46
40 61 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:13936499 original size:77 final size:77
Alignment explanation
Indices: 13936327--13936587 Score: 318
Period size: 77 Copynumber: 3.3 Consensus size: 77
13936317 GCTCCTCGTT
* * *
13936327 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGACTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCC
13936390 GGATTTAGTAACTCGCA
63 GGA-TTAGT-ACTCGCA
*
13936407 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGTACAAATGCCTTCGGGCTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGGA
13936471 TTAGTATCTCGCA
66 TTAGTA-CTCGCA
* *
13936484 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGG-GCTTAGCCCGG
* *
13936548 ATATTGTCACTTAGCA
65 AT-TAGT-AC-TCGCA
13936564 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
13936588 CATCATTCAA
Statistics
Matches: 164, Mismatches: 9, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
76 1 0.01
77 62 0.38
78 32 0.20
79 48 0.29
80 21 0.13
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (77 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGGA
TTAGTACTCGCA
Found at i:13938228 original size:26 final size:25
Alignment explanation
Indices: 13938199--13938256 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 25
13938189 ATAAAACCTA
*
13938199 AAAATGAAATAGTA-TTAAATGAAAAT
1 AAAAT-AAAAAGTACTTAAA-GAAAAT
*
13938225 AAAATAAAAAGTACTTAAAGAAGAT
1 AAAATAAAAAGTACTTAAAGAAAAT
13938250 -AAATAAA
1 AAAATAAA
13938257 GATAAAAGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 7 0.24
25 12 0.41
26 10 0.34
ACGTcount: A:0.66, C:0.02, G:0.10, T:0.22
Consensus pattern (25 bp):
AAAATAAAAAGTACTTAAAGAAAAT
Found at i:13938251 original size:25 final size:25
Alignment explanation
Indices: 13938199--13938282 Score: 70
Period size: 26 Copynumber: 3.4 Consensus size: 25
13938189 ATAAAACCTA
*
13938199 AAAATGAAATAGTATTAAATGAAAAT
1 AAAAT-AAAAAGTATTAAATGAAAAT
*
13938225 AAAATAAAAAGTACTTAAA-GAAGAT
1 AAAATAAAAAGTA-TTAAATGAAAAT
*
13938250 -AAAT--AAAG-ATAAAAGTGAAAAT
1 AAAATAAAAAGTATTAAA-TGAAAAT
13938272 AAAAATAAAAA
1 -AAAATAAAAA
13938283 ATAAAAAGTC
Statistics
Matches: 47, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
20 4 0.09
21 1 0.02
22 9 0.19
24 8 0.17
25 12 0.26
26 13 0.28
ACGTcount: A:0.68, C:0.01, G:0.11, T:0.20
Consensus pattern (25 bp):
AAAATAAAAAGTATTAAATGAAAAT
Found at i:13942122 original size:27 final size:27
Alignment explanation
Indices: 13942092--13942487 Score: 612
Period size: 27 Copynumber: 14.7 Consensus size: 27
13942082 CCAAAGTACA
* *
13942092 CTCGATTTACAGAATTACCATTTTACC
1 CTCGATTTATAGAATTACCGTTTTACC
*
13942119 CTCGATTTATAGAATTACCATTTTACC
1 CTCGATTTATAGAATTACCGTTTTACC
13942146 CTCGATTTATAGAATTACCGTTTTACC
1 CTCGATTTATAGAATTACCGTTTTACC
*
13942173 CTCGATTTAAAGAATTACCGTTTTACC
1 CTCGATTTATAGAATTACCGTTTTACC
* * *
13942200 CTCGATTTATATAAGTACCATTTTACC
1 CTCGATTTATAGAATTACCGTTTTACC
13942227 CTCGATTTATAGAATTACCGTTTTACC
1 CTCGATTTATAGAATTACCGTTTTACC
*
13942254 CTCGATTTAAAGAATTACCGTTTTACC
1 CTCGATTTATAGAATTACCGTTTTACC
* *
13942281 CTCGATTTATATAATTACCATTTTACC
1 CTCGATTTATAGAATTACCGTTTTACC
*
13942308 CTCGATTTATAGAATTACCATTTTACC
1 CTCGATTTATAGAATTACCGTTTTACC
* *
13942335 CTCGATTTATAGAATTACTGTTTTATC
1 CTCGATTTATAGAATTACCGTTTTACC
*
13942362 CTCGATTTATAGAATTATCGTTTTACC
1 CTCGATTTATAGAATTACCGTTTTACC
* *
13942389 CTCGATTTCTAGAATTACCATTTTACC
1 CTCGATTTATAGAATTACCGTTTTACC
*
13942416 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTATAGAATTACCGTTTTACC
*
13942443 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTATAGAATTACCGTTTTACC
* *
13942470 CTCGATTTACAAAATTAC
1 CTCGATTTATAGAATTAC
13942488 TGAAATACCC
Statistics
Matches: 341, Mismatches: 28, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 341 1.00
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.40
Consensus pattern (27 bp):
CTCGATTTATAGAATTACCGTTTTACC
Found at i:13942496 original size:27 final size:27
Alignment explanation
Indices: 13942075--13942740 Score: 304
Period size: 27 Copynumber: 24.7 Consensus size: 27
13942065 CTCAAATTGT
* *
13942075 AAAATTACCAAAGTACACTCGATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
* *** *
13942102 AGAATTACCATTTTACCCTCGATTTAT
1 AAAATTACCAAAATACCCTCGATTTAC
* *** *
13942129 AGAATTACCATTTTACCCTCGATTTAT
1 AAAATTACCAAAATACCCTCGATTTAC
* ****
13942156 AGAATTACCGTTTTACCCTCGATTTA-
1 AAAATTACCAAAATACCCTCGATTTAC
**** *
13942182 AAGAATTACCGTTTTACCCTCGATTTAT
1 AA-AATTACCAAAATACCCTCGATTTAC
* * *** *
13942210 ATAAGTACCATTTTACCCTCGATTTAT
1 AAAATTACCAAAATACCCTCGATTTAC
* ****
13942237 AGAATTACCGTTTTACCCTCGATTTA-
1 AAAATTACCAAAATACCCTCGATTTAC
**** *
13942263 AAGAATTACCGTTTTACCCTCGATTTAT
1 AA-AATTACCAAAATACCCTCGATTTAC
* *** *
13942291 ATAATTACCATTTTACCCTCGATTTAT
1 AAAATTACCAAAATACCCTCGATTTAC
* *** *
13942318 AGAATTACCATTTTACCCTCGATTTAT
1 AAAATTACCAAAATACCCTCGATTTAC
* ***** * *
13942345 AGAATTACTGTTTTATCCTCGATTTAT
1 AAAATTACCAAAATACCCTCGATTTAC
* * ****
13942372 AGAATTATCGTTTTACCCTCGATTT-C
1 AAAATTACCAAAATACCCTCGATTTAC
* ***
13942398 TAGAATTACCATTTTACCCTCGATTTAC
1 -AAAATTACCAAAATACCCTCGATTTAC
* ****
13942426 AGAATTACCGTTTTACCCTCGATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
* ****
13942453 AGAATTACCGTTTTACCCTCGATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
** *
13942480 AAAATTACTGAAATACCCTTGATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
* *
13942507 AAAATTACCAAAATACCCTCGA-TCAGT
1 AAAATTACCAAAATACCCTCGATTTA-C
* **
13942534 AAAATTACCAAAATACCC-CTGGTTTGT
1 AAAATTACCAAAATACCCTC-GATTTAC
* * * *
13942561 AAAATTACTAAAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCCTCGATTTAC
* *
13942588 AAAATTACCAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
* **
13942615 AAAATTACCAAAATACCC-CTAGTTTGT
1 AAAATTACCAAAATACCCTCGA-TTTAC
* *
13942642 AAAATTACCAAAATACCCT-TAGTTTAA
1 AAAATTACCAAAATACCCTCGA-TTTAC
* * **
13942669 AAAATTACCAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTCGATTTAC
*
13942696 AAAATTACCAAAATACCCT-TAGTTTAC
1 AAAATTACCAAAATACCCTCGA-TTTAC
13942723 AAAATTACCAAAATACCC
1 AAAATTACCAAAATACCC
13942741 CTGATTTGTG
Statistics
Matches: 563, Mismatches: 62, Indels: 28
0.86 0.09 0.04
Matches are distributed among these distances:
26 5 0.01
27 554 0.98
28 4 0.01
ACGTcount: A:0.34, C:0.22, G:0.08, T:0.36
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTCGATTTAC
Found at i:13942524 original size:54 final size:54
Alignment explanation
Indices: 13942075--13942770 Score: 337
Period size: 54 Copynumber: 12.9 Consensus size: 54
13942065 CTCAAATTGT
* * * * *** * *
13942075 AAAATTACCAAAGTACACTCGATTTACAGAATTACCATTTTACCCTCGATTTAT
1 AAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTTGATTTAC
* *** * **** *
13942129 AGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTA-
1 AAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTTGATTTAC
**** * * *** * *
13942182 AAGAATTACCGTTTTACCCTCGATTTATATAAGTACCATTTTACCCTCGATTTAT
1 AA-AATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTTGATTTAC
* **** **** * *
13942237 AGAATTACCGTTTTACCCTCGATTTA-AAGAATTACCGTTTTACCCTCGATTTAT
1 AAAATTACCAAAATACCCTCGATTTATAA-AATTACCAAAATACCCTTGATTTAC
* *** * *** * *
13942291 ATAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTAT
1 AAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTTGATTTAC
* ***** * * * **** *
13942345 AGAATTACTGTTTTATCCTCGATTTATAGAATTATCGTTTTACCCTCGATTT-C
1 AAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTTGATTTAC
* *** * * **** *
13942398 TAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTAC
1 -AAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTTGATTTAC
* **** * **
13942453 AGAATTACCGTTTTACCCTCGATTTACAAAATTACTGAAATACCCTTGATTTAC
1 AAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTTGATTTAC
* * * **
13942507 AAAATTACCAAAATACCCTCGA-TCAGTAAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCTCGATTTA-TAAAATTACCAAAATACCCTTGATTTAC
* * * *
13942561 AAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTTGATTTAC
* * *
13942615 AAAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCCTT-AGTTTAA
1 AAAATTACCAAAATACCCTCGA-TTTATAAAATTACCAAAATACCCTTGA-TTTAC
* * *
13942669 AAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTT-AGTTTAC
1 AAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTTGA-TTTAC
* * **
13942723 AAAATTACCAAAATACCC-CTGATTTGTGAAATTACTGAAATACCCTTG
1 AAAATTACCAAAATACCCTC-GATTTATAAAATTACCAAAATACCCTTG
13942771 TAGGGTAGAA
Statistics
Matches: 554, Mismatches: 75, Indels: 25
0.85 0.11 0.04
Matches are distributed among these distances:
53 4 0.01
54 545 0.98
55 5 0.01
ACGTcount: A:0.34, C:0.22, G:0.09, T:0.36
Consensus pattern (54 bp):
AAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTTGATTTAC
Found at i:13942755 original size:81 final size:81
Alignment explanation
Indices: 13942475--13942770 Score: 351
Period size: 81 Copynumber: 3.7 Consensus size: 81
13942465 TTACCCTCGA
** * * * * **
13942475 TTTACAAAATTACTGAAATACCCTTGATTTACAAAATTACCAAAATACCCTCGATCAGTAAAATT
1 TTTACAAAATTACCAAAATACCCCTGATTTATAAAATTACCAAAATACCCTTGGTTTGTAAAATT
*
13942540 ACCAAAATACCCCTGG
66 ACCAAAATACCCCTAG
** * * * **
13942556 TTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCTTGGTTTACAAAATT
1 TTTACAAAATTACCAAAATACCCCTGATTTATAAAATTACCAAAATACCCTTGGTTTGTAAAATT
13942621 ACCAAAATACCCCTAG
66 ACCAAAATACCCCTAG
** * *
13942637 TTTGTAAAATTACCAAAATA-CCCTTAGTTTAAAAAATTACCAAAATACCCTTGGTTTGTAAAAT
1 TTTACAAAATTACCAAAATACCCCTGA-TTTATAAAATTACCAAAATACCCTTGGTTTGTAAAAT
*
13942701 TACCAAAATACCCTTAG
65 TACCAAAATACCCCTAG
* * **
13942718 TTTACAAAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCTTG
1 TTTACAAAATTACCAAAATACCCCTGATTTATAAAATTACCAAAATACCCTTG
13942771 TAGGGTAGAA
Statistics
Matches: 185, Mismatches: 28, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
80 3 0.02
81 177 0.96
82 5 0.03
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.31
Consensus pattern (81 bp):
TTTACAAAATTACCAAAATACCCCTGATTTATAAAATTACCAAAATACCCTTGGTTTGTAAAATT
ACCAAAATACCCCTAG
Found at i:13942789 original size:27 final size:28
Alignment explanation
Indices: 13942724--13942807 Score: 93
Period size: 27 Copynumber: 3.1 Consensus size: 28
13942714 TTAGTTTACA
* **
13942724 AAATTACCAAAATACCCCTG-ATTTGT-G
1 AAATTACCGAAATACCCCTGTA-GGGTAG
* *
13942751 AAATTACTGAAATACCCTTGTAGGGTAG
1 AAATTACCGAAATACCCCTGTAGGGTAG
13942779 AAA-TACCGAAATACCCCTGTAGGGTAG
1 AAATTACCGAAATACCCCTGTAGGGTAG
13942806 AA
1 AA
13942808 TTATCATTTT
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
27 43 0.90
28 5 0.10
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.25
Consensus pattern (28 bp):
AAATTACCGAAATACCCCTGTAGGGTAG
Found at i:13943051 original size:25 final size:25
Alignment explanation
Indices: 13943017--13943086 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
13943007 AGGAAGTGCT
*
13943017 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
13943042 AAAAGGGCTTTGCCTCAGTTTACCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
13943067 AAAAGGGATTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
13943087 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:13943152 original size:33 final size:33
Alignment explanation
Indices: 13943113--13943179 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
13943103 CCTCCAGTTA
13943113 TATGATAAAGCAACTATGCTGCCAGTGGAGAGT
1 TATGATAAAGCAACTATGCTGCCAGTGGAGAGT
13943146 TATGATAAAGCAACTATGCTGCCAGTGGAGAGT
1 TATGATAAAGCAACTATGCTGCCAGTGGAGAGT
13943179 T
1 T
13943180 TGGTTGGGTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.33, C:0.15, G:0.27, T:0.25
Consensus pattern (33 bp):
TATGATAAAGCAACTATGCTGCCAGTGGAGAGT
Found at i:13945264 original size:43 final size:43
Alignment explanation
Indices: 13945203--13945284 Score: 137
Period size: 43 Copynumber: 1.9 Consensus size: 43
13945193 ATACGATGCC
*
13945203 TAAATCTCAATCAAGGCCTGTGCCCTAGACACGGTCTTATACG
1 TAAATCTCAATCAAGGCCTGTGCCCTAGACACGATCTTATACG
* *
13945246 TAAATCTCAATCGAGGCCTGTGTCCTAGACACGATCTTA
1 TAAATCTCAATCAAGGCCTGTGCCCTAGACACGATCTTA
13945285 CACGATGTCT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (43 bp):
TAAATCTCAATCAAGGCCTGTGCCCTAGACACGATCTTATACG
Found at i:13953084 original size:40 final size:40
Alignment explanation
Indices: 13952945--13953087 Score: 155
Period size: 40 Copynumber: 3.6 Consensus size: 40
13952935 GCTACTCGTT
* * * *
13952945 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCAGATATAGTAACTAGCA
* * * *
13952985 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCAGATATAGTAACTAGCA
* * *
13953025 CAAATGCCTTC-GGATCTTAGTCCAGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCAGATATAGTAAC-TAGCA
13953066 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
13953088 GGACAACATT
Statistics
Matches: 88, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
39 3 0.03
40 74 0.84
41 11 0.12
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCAGATATAGTAACTAGCA
Found at i:13955073 original size:12 final size:12
Alignment explanation
Indices: 13955056--13955081 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
13955046 AGTGATTTAA
13955056 TTTGCTAGAAGC
1 TTTGCTAGAAGC
13955068 TTTGCTAGAAGC
1 TTTGCTAGAAGC
13955080 TT
1 TT
13955082 ACCAGAAGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.15, G:0.23, T:0.38
Consensus pattern (12 bp):
TTTGCTAGAAGC
Found at i:13963821 original size:18 final size:18
Alignment explanation
Indices: 13963798--13963840 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
13963788 TTCAAATATC
*
13963798 AATAATACAGTAATTAAT
1 AATAATACACTAATTAAT
13963816 AATAATACACTAATTAAT
1 AATAATACACTAATTAAT
13963834 AATAATA
1 AATAATA
13963841 ATTTTCATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.58, C:0.07, G:0.02, T:0.33
Consensus pattern (18 bp):
AATAATACACTAATTAAT
Found at i:13973709 original size:16 final size:16
Alignment explanation
Indices: 13973688--13973722 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
13973678 TTCGGCCTTA
13973688 TCATATATATATACTT
1 TCATATATATATACTT
13973704 TCATATATATATACTT
1 TCATATATATATACTT
13973720 TCA
1 TCA
13973723 CATTCATCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.37, C:0.14, G:0.00, T:0.49
Consensus pattern (16 bp):
TCATATATATATACTT
Found at i:13973770 original size:47 final size:48
Alignment explanation
Indices: 13973716--13973826 Score: 197
Period size: 47 Copynumber: 2.3 Consensus size: 48
13973706 ATATATATAT
13973716 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC-ATACATAC
1 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAATACATAC
*
13973763 ACTTTCACATTCATCTCATTGGCCATTCGGCCTTATCACATATACATAC
1 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACA-ATACATAC
13973812 ACTTTCACATTCATC
1 ACTTTCACATTCATC
13973827 GTAACAAAAT
Statistics
Matches: 61, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
47 38 0.62
49 23 0.38
ACGTcount: A:0.27, C:0.32, G:0.07, T:0.34
Consensus pattern (48 bp):
ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAATACATAC
Found at i:13979098 original size:28 final size:28
Alignment explanation
Indices: 13979066--13979167 Score: 98
Period size: 28 Copynumber: 3.5 Consensus size: 28
13979056 TCAGAGTTAG
* *
13979066 CTGGGCCTTAGCCCATATCAATAACAAT
1 CTGGGCCATAGCCCATATCAATATCAAT
* *
13979094 CTGGGCCATAGCCCCT-TACAGTATCAAAGT
1 CTGGGCCATAGCCCATAT-CAATATC-AA-T
* *
13979124 ATAGTGGCCCTAGCCCATATCAATATCAAT
1 CT-G-GGCCATAGCCCATATCAATATCAAT
13979154 CTGGGCCATAGCCC
1 CTGGGCCATAGCCC
13979168 TATTACAAGT
Statistics
Matches: 58, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
27 1 0.02
28 29 0.50
29 3 0.05
30 4 0.07
31 3 0.05
32 17 0.29
33 1 0.02
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (28 bp):
CTGGGCCATAGCCCATATCAATATCAAT
Found at i:13979221 original size:20 final size:20
Alignment explanation
Indices: 13979196--13979241 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
13979186 GTTGGGTCTT
13979196 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
13979216 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
13979235 GCCCATA
1 GCCCATA
13979242 ACAAACAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:13983197 original size:28 final size:27
Alignment explanation
Indices: 13983097--13983198 Score: 80
Period size: 28 Copynumber: 3.5 Consensus size: 27
13983087 TCAGAGTTAA
*
13983097 CTGGGCCTTAGCCCATATCAGTAACAAT
1 CTGGGCC-TAGCCCATATCAGTATCAAT
* *
13983125 CTGGGCCATAGCCCCT-TAAAGTATCAAAGTAT
1 CTGGGCC-TAGCCCATAT-CAGTATC--A--AT
*
13983157 ACTAGGCCTAGCCCATATCAGTATCAAT
1 -CTGGGCCTAGCCCATATCAGTATCAAT
13983185 CTGGGCCGTAGCCC
1 CTGGGCC-TAGCCC
13983199 TATTACAAGT
Statistics
Matches: 58, Mismatches: 8, Indels: 16
0.71 0.10 0.20
Matches are distributed among these distances:
27 7 0.12
28 27 0.47
30 2 0.03
32 15 0.26
33 7 0.12
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (27 bp):
CTGGGCCTAGCCCATATCAGTATCAAT
Found at i:13983231 original size:60 final size:59
Alignment explanation
Indices: 13983096--13983234 Score: 147
Period size: 60 Copynumber: 2.3 Consensus size: 59
13983086 ATCAGAGTTA
*
13983096 ACTGGGCCTTAGCCCATATCAGTAACAATCTGGGCCATAGCCCCTTAAAGTATCAAAGTAT
1 ACTGGGCCTT-GCCCATATCAGTAACAATCTGGGCCATAGCCCATTAAAG-ATCAAAGTAT
* * * * *
13983157 ACTAGGCCTAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACAAG-TC-GAGATAT
1 ACTGGGCCTTGCCCATATCAGTAACAATCTGGGCCATAGCCC-ATTA-AAGATCAAAG-TAT
**
13983217 GTTGGGCCTTGCCCATAT
1 ACTGGGCCTTGCCCATAT
13983235 TACCACAGTT
Statistics
Matches: 65, Mismatches: 10, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
59 2 0.03
60 49 0.75
61 11 0.17
62 3 0.05
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (59 bp):
ACTGGGCCTTGCCCATATCAGTAACAATCTGGGCCATAGCCCATTAAAGATCAAAGTAT
Found at i:13984243 original size:25 final size:23
Alignment explanation
Indices: 13984188--13984243 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
13984178 TTTCGGCTAG
*
13984188 AGAAGAAAAGAAAGGAGAATAGA
1 AGAAGAAAAGAAAGGAGAAGAGA
* *
13984211 AAATAGAAGAAGAGAGGAGAAGAGA
1 AGA-AGAA-AAGAAAGGAGAAGAGA
13984236 AGGAAGAA
1 A-GAAGAA
13984244 TTCGGCACTC
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
23 2 0.08
24 4 0.15
25 19 0.73
26 1 0.04
ACGTcount: A:0.62, C:0.00, G:0.34, T:0.04
Consensus pattern (23 bp):
AGAAGAAAAGAAAGGAGAAGAGA
Found at i:13985554 original size:29 final size:29
Alignment explanation
Indices: 13985521--13985597 Score: 118
Period size: 29 Copynumber: 2.7 Consensus size: 29
13985511 TGAATATGAC
* *
13985521 TGGGCCTAACGGGCCATATAAATGTGATT
1 TGGGCCTAATGGGCCATATAAAGGTGATT
* *
13985550 TGGGCTTAATGGGCCATATACAGGTGATT
1 TGGGCCTAATGGGCCATATAAAGGTGATT
13985579 TGGGCCTAATGGGCCATAT
1 TGGGCCTAATGGGCCATAT
13985598 GAATATGAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.29
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAAGGTGATT
Found at i:13985593 original size:58 final size:57
Alignment explanation
Indices: 13985521--13985631 Score: 159
Period size: 58 Copynumber: 1.9 Consensus size: 57
13985511 TGAATATGAC
* * *
13985521 TGGGCCTAACGGGCCATATAAATGTGATTTGGGCTTAATGGGCCATATACAGGTGATT
1 TGGGCCTAACGGGCCATATAAATATGA-ATGGGCTTAATGGGCCAGATACAGGTGATT
* * *
13985579 TGGGCCTAATGGGCCATATGAATATGAATGGGCTTAATGGGCTAGATACAGGT
1 TGGGCCTAACGGGCCATATAAATATGAATGGGCTTAATGGGCCAGATACAGGT
13985632 ATGTGAATTT
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 23 0.49
58 24 0.51
ACGTcount: A:0.27, C:0.14, G:0.31, T:0.28
Consensus pattern (57 bp):
TGGGCCTAACGGGCCATATAAATATGAATGGGCTTAATGGGCCAGATACAGGTGATT
Found at i:13988379 original size:93 final size:93
Alignment explanation
Indices: 13988275--13988445 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
13988265 CCCATAAGCA
* *
13988275 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCGAATCCATAAGTGAGCTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGAATCCATAAGTGAGCTCGGACTCAACTCAAC
13988340 AAGCTCGGATGCCTAGTTACATCTCACG
66 AAGCTCGGATGCCTAGTTACATCTCACG
* * *
13988368 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGATCTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGAATCCATAAGTGAGCTCGGACTCAACTCAAC
* *
13988433 GAGTTCGGATGCC
66 AAGCTCGGATGCC
13988446 CAAATATCCG
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCGGACATTCGAATCCATAAGTGAGCTCGGACTCAACTCAAC
AAGCTCGGATGCCTAGTTACATCTCACG
Found at i:13988441 original size:46 final size:46
Alignment explanation
Indices: 13988266--13988441 Score: 162
Period size: 46 Copynumber: 3.8 Consensus size: 46
13988256 TGTAACCCGC
** * * *
13988266 CCATAAGCAAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGAAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * *
13988312 CCATAAGTGAGCTCGGACTCAACTCAACAAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* * *
13988362 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
13988405 CCATAAGTGATCTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
13988442 TGCCCAAATA
Statistics
Matches: 104, Mismatches: 17, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 60 0.58
47 26 0.25
48 2 0.02
49 2 0.02
50 2 0.02
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:13991217 original size:30 final size:29
Alignment explanation
Indices: 13991173--13991242 Score: 97
Period size: 30 Copynumber: 2.4 Consensus size: 29
13991163 TAAAGGTAAC
*
13991173 AAGAAAACCAAATAAAGAAATCCA-AGATA
1 AAGAAACCCAAATAAAGAAATCCAGA-ATA
*
13991202 GAGAAACCCAGAATAAAGAAATCCAGAATA
1 AAGAAACCCA-AATAAAGAAATCCAGAATA
13991232 AAGAAACCCAA
1 AAGAAACCCAA
13991243 GATACGATAC
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
29 9 0.25
30 26 0.72
31 1 0.03
ACGTcount: A:0.61, C:0.17, G:0.13, T:0.09
Consensus pattern (29 bp):
AAGAAACCCAAATAAAGAAATCCAGAATA
Found at i:13991221 original size:15 final size:14
Alignment explanation
Indices: 13991173--13991242 Score: 77
Period size: 15 Copynumber: 4.8 Consensus size: 14
13991163 TAAAGGTAAC
*
13991173 AAGAAAACCAAATA
1 AAGAAACCCAAATA
*
13991187 AAGAAATCCAAGATA
1 AAGAAACCCAA-ATA
*
13991202 GAGAAACCCAGAATA
1 AAGAAACCCA-AATA
*
13991217 AAGAAATCCAGAATA
1 AAGAAACCCA-AATA
13991232 AAGAAACCCAA
1 AAGAAACCCAA
13991243 GATACGATAC
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
14 11 0.23
15 36 0.75
16 1 0.02
ACGTcount: A:0.61, C:0.17, G:0.13, T:0.09
Consensus pattern (14 bp):
AAGAAACCCAAATA
Found at i:13994249 original size:46 final size:46
Alignment explanation
Indices: 13994076--13994245 Score: 186
Period size: 46 Copynumber: 3.7 Consensus size: 46
13994066 TGTAACCTGC
* * *
13994076 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
* *
13994122 CCATAATTGAACTCGGACTCAACTCAACGAGCTCTGA--TTC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGC-A--T
* * * *
13994168 ACATCTCA-TGAACTCGAACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
13994215 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
13994246 TTCGAATGCC
Statistics
Matches: 102, Mismatches: 13, Indels: 18
0.77 0.10 0.14
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 2 0.02
46 58 0.57
47 30 0.29
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
Found at i:14005266 original size:106 final size:106
Alignment explanation
Indices: 14005081--14005290 Score: 375
Period size: 106 Copynumber: 2.0 Consensus size: 106
14005071 CTGCATTTTA
* *
14005081 GCACTGCTTTTCACCCCCAAACCGATGGTCAATCCGAGTGGATAATTCAGATACTTGAGGATATG
1 GCACTACTTTTCACCCCCAAACCGATGGTCAATCCGAGCGGATAATTCAGATACTTGAGGATATG
14005146 TTGAGATGTTGCATCCTCAAGTTCAGTAGTTCATGGGAATG
66 TTGAGATGTTGCATCCTCAAGTTCAGTAGTTCATGGGAATG
* *
14005187 GCACTACTTTTCATCCCCAAACCGATGGTCAATCTGAGCGGATAATTCAGATACTTGAGGATATG
1 GCACTACTTTTCACCCCCAAACCGATGGTCAATCCGAGCGGATAATTCAGATACTTGAGGATATG
*
14005252 TTGAGATGTTGCATCCTCGAGTTCAGTAGTTCATGGGAA
66 TTGAGATGTTGCATCCTCAAGTTCAGTAGTTCATGGGAA
14005291 CGGTATTTAC
Statistics
Matches: 99, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
106 99 1.00
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (106 bp):
GCACTACTTTTCACCCCCAAACCGATGGTCAATCCGAGCGGATAATTCAGATACTTGAGGATATG
TTGAGATGTTGCATCCTCAAGTTCAGTAGTTCATGGGAATG
Found at i:14005352 original size:30 final size:30
Alignment explanation
Indices: 14005316--14005375 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
14005306 ATTGAATTCG
14005316 CTTACAACAATAGTTTTCAATCAAGTATTA
1 CTTACAACAATAGTTTTCAATCAAGTATTA
14005346 CTTACAACAATAGTTTTCAATCAAGTATTA
1 CTTACAACAATAGTTTTCAATCAAGTATTA
14005376 AGATGGCACC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.37
Consensus pattern (30 bp):
CTTACAACAATAGTTTTCAATCAAGTATTA
Found at i:14006192 original size:58 final size:58
Alignment explanation
Indices: 14006102--14006217 Score: 223
Period size: 58 Copynumber: 2.0 Consensus size: 58
14006092 CGAGTCACCA
14006102 AATTATTTGAATGTGATAATTATTGCCTAAAATATATGAATATAAATGTGTGAAAGTT
1 AATTATTTGAATGTGATAATTATTGCCTAAAATATATGAATATAAATGTGTGAAAGTT
*
14006160 AATTATTTGAATGTGATAATTATTGCCTAAAATATGTGAATATAAATGTGTGAAAGTT
1 AATTATTTGAATGTGATAATTATTGCCTAAAATATATGAATATAAATGTGTGAAAGTT
14006218 TTAAGCTTTG
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.41, C:0.03, G:0.16, T:0.40
Consensus pattern (58 bp):
AATTATTTGAATGTGATAATTATTGCCTAAAATATATGAATATAAATGTGTGAAAGTT
Found at i:14008033 original size:40 final size:40
Alignment explanation
Indices: 14007881--14008026 Score: 181
Period size: 40 Copynumber: 3.6 Consensus size: 40
14007871 TTGAATGATG
* * * *
14007881 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
14007921 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
14007961 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
14008002 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
14008027 AACGAGTAGC
Statistics
Matches: 93, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
39 1 0.01
40 82 0.88
41 10 0.11
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:14008033 original size:80 final size:80
Alignment explanation
Indices: 14007881--14008059 Score: 195
Period size: 80 Copynumber: 2.2 Consensus size: 80
14007871 TTGAATGATG
* *
14007881 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
**
14007946 GTGCGAGTTA-CTAAA
66 GAACGAG-TAGCTAAA
* * * * *
14007961 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
*
14008024 TTGAACGAGTAGCTATA
64 TTGAACGAGTAGCTAAA
* *
14008041 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
14008060 TACGTGATTT
Statistics
Matches: 84, Mismatches: 12, Indels: 7
0.82 0.12 0.07
Matches are distributed among these distances:
79 17 0.20
80 60 0.71
81 7 0.08
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGTAGCTAAA
Found at i:14010096 original size:28 final size:28
Alignment explanation
Indices: 14010065--14010170 Score: 122
Period size: 28 Copynumber: 3.8 Consensus size: 28
14010055 GAAGTAGTTT
14010065 GGCCTAATGGGCCATATGAATGTGATTG
1 GGCCTAATGGGCCATATGAATGTGATTG
* *
14010093 GGCCTGATGGGTCATATGAATGTGATTG
1 GGCCTAATGGGCCATATGAATGTGATTG
* * * * *
14010121 GGCCTAATGGACTATACGAACGAGATTG
1 GGCCTAATGGGCCATATGAATGTGATTG
* *
14010149 GGCCTAAAGGGGCCAAATGAAT
1 GGCCT-AATGGGCCATATGAAT
14010171 AAGTGTGGAT
Statistics
Matches: 62, Mismatches: 15, Indels: 1
0.79 0.19 0.01
Matches are distributed among these distances:
28 52 0.84
29 10 0.16
ACGTcount: A:0.28, C:0.15, G:0.32, T:0.25
Consensus pattern (28 bp):
GGCCTAATGGGCCATATGAATGTGATTG
Found at i:14010508 original size:27 final size:27
Alignment explanation
Indices: 14010470--14010943 Score: 551
Period size: 27 Copynumber: 17.7 Consensus size: 27
14010460 TAATAAAGAG
* *
14010470 AAATTACTGAAATACTCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
14010497 AAATTACCGAAATACCCTCGA-TTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
* **
14010523 ACATTACTAAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
14010550 AAATTACCGAAATACCCCCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
14010577 AAATTACCGAAATACTCTC-AATTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
*
14010603 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
14010630 AAATTACCGAAACACCCTTGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
14010657 AAATTACCGAAATACCCTTGA-TGGTG
1 AAATTACCGAAATACCCTCGATTTGTA
**
14010683 AAATTATTGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
** * *
14010710 AAATTATTGAAACACCCTCGATTTGGA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
14010737 AAATTACCGAAACACCCTCGATTTGGA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
14010764 AAATTATCGAAACACCCTCGATTTGGA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
14010791 AAATTATCGAAATACCCTCGATTTATA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
14010818 AAATTATCAAAATACCCTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
14010845 AAATTACCGAAATACCTTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
14010872 AAATTACCGAAACACCCTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
14010899 AAATTATCGAAATACCCTTG-TAGTGTA
1 AAATTACCGAAATACCCTCGAT-TTGTA
*
14010926 AAATTATCGAAATACCCT
1 AAATTACCGAAATACCCT
14010944 TGTAGGGTAA
Statistics
Matches: 389, Mismatches: 54, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
26 66 0.17
27 323 0.83
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.30
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGATTTGTA
Found at i:14010603 original size:80 final size:80
Alignment explanation
Indices: 14010470--14010943 Score: 567
Period size: 80 Copynumber: 5.9 Consensus size: 80
14010460 TAATAAAGAG
* * * * *
14010470 AAATTACTGAAATACTCTCGATTTGTAAAATTACCGAAATACCCTCGATTGTGACATTACTAAAA
1 AAATTACCGAAACACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTGTGAAATTACTGAAA
14010535 TACCCTCGATTTGTA
66 TACCCTCGATTTGTA
* * * * *
14010550 AAATTACCGAAATACCCCCAATTTGTAAAATTACCGAAATACTCTCAATTGTGAAATTACTGAAA
1 AAATTACCGAAACACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTGTGAAATTACTGAAA
14010615 TACCCTCGATTTGTA
66 TACCCTCGATTTGTA
* * * *
14010630 AAATTACCGAAACACCCTTGATTTGTAAAATTACCGAAATACCCTTGATGGTGAAATTATTGAAA
1 AAATTACCGAAACACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTGTGAAATTACTGAAA
14010695 TACCCTCGATTTGTA
66 TACCCTCGATTTGTA
** * *
14010710 AAATTATTGAAACACCCTCGATTTGGAAAATTACCGAAACACCCTCGATT-TGGAAAATTA-TCG
1 AAATTACCGAAACACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTGT-G-AAATTACT-G
* *
14010773 AAACACCCTCGATTTGGA
63 AAATACCCTCGATTTGTA
* * * * * * * *
14010791 AAATTATCGAAATACCCTCGATTTATAAAATTATCAAAATACCCTCAATTTGTAAAATTACCGAA
1 AAATTACCGAAACACCCTCGATTTGTAAAATTACCGAAATACCCTCGA-TTGTGAAATTACTGAA
*
14010856 ATACCTTCGATTTGTA
65 ATACCCTCGATTTGTA
* * * * *
14010872 AAATTACCGAAACACCCTCAATTTGTAAAATTATCGAAATACCCTTGTAGTGTAAAATTA-TCGA
1 AAATTACCGAAACACCCTCGATTTGTAAAATTACCGAAATACCCTCG-ATTGTGAAATTACT-GA
14010936 AATACCCT
64 AATACCCT
14010944 TGTAGGGTAA
Statistics
Matches: 337, Mismatches: 49, Indels: 15
0.84 0.12 0.04
Matches are distributed among these distances:
79 1 0.00
80 188 0.56
81 144 0.43
82 3 0.01
83 1 0.00
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.30
Consensus pattern (80 bp):
AAATTACCGAAACACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTGTGAAATTACTGAAA
TACCCTCGATTTGTA
Found at i:14010953 original size:27 final size:27
Alignment explanation
Indices: 14010896--14010983 Score: 115
Period size: 27 Copynumber: 3.3 Consensus size: 27
14010886 CCCTCAATTT
*
14010896 GTAAAATTATCGAAATACCCTTGTAGT
1 GTAAAATTATCGAAATACCCTTGTAGG
14010923 GTAAAATTATCGAAATACCCTTGTAGG
1 GTAAAATTATCGAAATACCCTTGTAGG
* * * *
14010950 GTAAAATGA-CAGACATACCCCTATAGG
1 GTAAAATTATC-GAAATACCCTTGTAGG
14010977 GTAAAAT
1 GTAAAAT
14010984 GACTGTTTTA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
26 1 0.02
27 54 0.98
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.27
Consensus pattern (27 bp):
GTAAAATTATCGAAATACCCTTGTAGG
Found at i:14011004 original size:26 final size:26
Alignment explanation
Indices: 14010910--14011011 Score: 75
Period size: 27 Copynumber: 3.8 Consensus size: 26
14010900 AATTATCGAA
* * *
14010910 ATACCCTTGTAGTGTAAAATTATC-GAA
1 ATACCCTTG-AGGGTAAAATGA-CAGAC
14010937 ATACCCTTGTAGGGTAAAATGACAGAC
1 ATACCCTTG-AGGGTAAAATGACAGAC
* **
14010964 ATACCCCTAT-AGGGTAAAATGACTGTT
1 ATA-CCCT-TGAGGGTAAAATGACAGAC
*
14010991 TTACCCTTGAGGGT-AAATGAC
1 ATACCCTTGAGGGTAAAATGAC
14011012 CGACTTTGAT
Statistics
Matches: 64, Mismatches: 7, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
25 8 0.12
26 10 0.16
27 41 0.64
28 4 0.06
29 1 0.02
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (26 bp):
ATACCCTTGAGGGTAAAATGACAGAC
Found at i:14015443 original size:46 final size:45
Alignment explanation
Indices: 14015376--14015547 Score: 179
Period size: 46 Copynumber: 3.7 Consensus size: 45
14015366 AACCCGCCCC
*
14015376 TAAGTGAACTCGGAATCAACTCAACGAGCTT-GGGCGTTCGTATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAG-TTCGGGC-TTCGTATCCA
* * * *
14015422 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGT-TACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--GCTTCGTATCCA
* * * *
14015468 TTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGC-TTCGTATCCA
14015515 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
14015548 ATGCTCAACC
Statistics
Matches: 103, Mismatches: 15, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
45 5 0.05
46 61 0.59
47 33 0.32
48 4 0.04
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCTTCGTATCCA
Found at i:14015494 original size:93 final size:93
Alignment explanation
Indices: 14015381--14015551 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
14015371 GCCCCTAAGT
* * *
14015381 GAACTCGGAATCAACTCAACGAGCTT-GGGCGTTCGTATCCATAAGTGAACTCAGACTCAACTCA
1 GAACTCGGAATCAACTCAACGAG-TTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
14015445 ACGAGTTCGGATGCCTAGTTACATTTCAC
65 ACGAGTTCGGATGCCTAGTTACATTTCAC
* *
14015474 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGAATCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
14015539 CGAGTTCGGATGC
66 CGAGTTCGGATGC
14015552 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGGAATCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:14022625 original size:47 final size:47
Alignment explanation
Indices: 14022595--14022985 Score: 674
Period size: 47 Copynumber: 8.3 Consensus size: 47
14022585 GTGAACATGC
* * *
14022595 ATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAAGGTGAAAGTGT
14022642 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAAGGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAAGGTGAAAGTGT
14022689 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAAGGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAAGGTGAAAGTGT
14022736 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAAGGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAAGGTGAAAGTGT
14022783 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAAGGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAAGGTGAAAGTGT
14022830 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAAGGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAAGGTGAAAGTGT
14022877 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAAGGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAAGGTGAAAGTGT
* * * * * * *
14022924 ATATATGTGATCAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGT
1 ATATATGTGAT-AAGGCCTAATAGCCGATGTGATGAAGGTGAAAGTGT
*
14022972 ATAAATGTGATAAG
1 ATATATGTGATAAG
14022986 TCCCGAAGGG
Statistics
Matches: 331, Mismatches: 12, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
47 292 0.88
48 39 0.12
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
ATATATGTGATAAGGCCTAATAGCCGATGTGATGAAGGTGAAAGTGT
Found at i:14023160 original size:37 final size:37
Alignment explanation
Indices: 14023104--14023182 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
14023094 CCGAGCTCTA
* * *
14023104 AAGACCCGATGACTACGTGTGGGGATTTTGTCAGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCAGGGT
* *
14023141 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCAGGGT
14023178 AAGAC
1 AAGAC
14023183 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCAGGGT
Found at i:14043605 original size:28 final size:27
Alignment explanation
Indices: 14043560--14043614 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 27
14043550 GCATCTGATA
*
14043560 CTAATTCTATATTAGGCTTAGGCCCAC
1 CTAATTCTATATTAGGCTAAGGCCCAC
* *
14043587 CTAATTCTGTTATTGGGCTAAGGCCCAC
1 CTAATTCT-ATATTAGGCTAAGGCCCAC
14043615 TTGATACTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
27 8 0.33
28 16 0.67
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (27 bp):
CTAATTCTATATTAGGCTAAGGCCCAC
Found at i:14043624 original size:28 final size:28
Alignment explanation
Indices: 14043569--14043625 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
14043559 ACTAATTCTA
* *
14043569 TATTAGGCTTAGGCCCACCTAATTCTGT
1 TATTAGGCTAAGGCCCACCTAATACTGT
* * *
14043597 TATTGGGCTAAGGCCCACTTGATACTGT
1 TATTAGGCTAAGGCCCACCTAATACTGT
14043625 T
1 T
14043626 TCTGTGATGG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (28 bp):
TATTAGGCTAAGGCCCACCTAATACTGT
Found at i:14048569 original size:46 final size:46
Alignment explanation
Indices: 14048440--14048576 Score: 184
Period size: 46 Copynumber: 3.0 Consensus size: 46
14048430 TATATATACA
* * * * *
14048440 CATCTCATACATATCTCACATTAGCCATTTGGCTTTAACACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * *
14048486 CATCTCATACACGTTACGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
14048532 CATCTCATACACATTTTGCATTAGCCATTCGGCTTTACCATATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
14048577 ATACACTTCC
Statistics
Matches: 78, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.27, C:0.29, G:0.09, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:14048624 original size:47 final size:47
Alignment explanation
Indices: 14048550--14048975 Score: 602
Period size: 47 Copynumber: 9.1 Consensus size: 47
14048540 ACACATTTTG
* * * * * * *
14048550 CATTAGCCATTCGGCTTTACCATATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
*
14048597 CATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * *
14048644 CATTGGTCATTCGGCCTTATCACAGATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * *
14048691 CATTGGCCATTCAGCCTTATCACACATATGCATGTTCACCTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
14048738 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
**
14048785 CATTTTCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
14048832 CATTGGCCATTTGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * *
14048879 CATTGGCCATTTGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * ** *
14048926 CATTGGCCATTCGGCCTTATCTCATATATACACATTCGCATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
14048973 CAT
1 CAT
14048976 AAAATCCTAA
Statistics
Matches: 341, Mismatches: 37, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
46 1 0.00
47 340 1.00
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.35
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:14048712 original size:22 final size:22
Alignment explanation
Indices: 14048687--14048758 Score: 60
Period size: 23 Copynumber: 3.1 Consensus size: 22
14048677 GTTCACATTC
14048687 ATCACATTGGCCATTCAGCCTT
1 ATCACATTGGCCATTCAGCCTT
14048709 ATCACACATAT-G-CATGTTCA-CCTT
1 AT--CACAT-TGGCCA--TTCAGCCTT
*
14048733 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCAGCCTT
14048756 ATC
1 ATC
14048759 TCATATATGC
Statistics
Matches: 40, Mismatches: 1, Indels: 18
0.68 0.02 0.31
Matches are distributed among these distances:
22 9 0.22
23 12 0.30
24 12 0.30
25 7 0.17
ACGTcount: A:0.24, C:0.32, G:0.12, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCAGCCTT
Found at i:14048856 original size:22 final size:22
Alignment explanation
Indices: 14048828--14048902 Score: 71
Period size: 22 Copynumber: 3.3 Consensus size: 22
14048818 GTTCACATTC
14048828 ATCACATTGGCCATTTGGCCTT
1 ATCACATTGGCCATTTGGCCTT
* ** *
14048850 ATCACATATATG-CATGTTCACATT
1 ATCACAT-T-GGCCAT-TTGGCCTT
14048874 CATCACATTGGCCATTTGGCCTT
1 -ATCACATTGGCCATTTGGCCTT
14048897 ATCACA
1 ATCACA
14048903 CATACGCATG
Statistics
Matches: 40, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
22 13 0.32
23 10 0.25
24 10 0.25
25 7 0.17
ACGTcount: A:0.25, C:0.27, G:0.13, T:0.35
Consensus pattern (22 bp):
ATCACATTGGCCATTTGGCCTT
Found at i:14052977 original size:40 final size:40
Alignment explanation
Indices: 14052932--14053286 Score: 489
Period size: 40 Copynumber: 8.9 Consensus size: 40
14052922 GAATACACAT
*
14052932 CACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
14052972 CACCAGTACGAATGCTCTTCGGGACTTAACCCTGAT-TAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
14053011 CTCCAGCACGAATGCTCTTCGAGACTTAGACCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * * *
14053051 CTCCAGCACGAATGCTCTGCGAGACTTAGCCCGGATATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
14053091 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * * *
14053131 CTCCAGCACGAATGCTCTTCGAGACTTAGCCCGGAGATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
14053171 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
**
14053211 CACCAGTC-CCTATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAG-CACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
14053251 CACTAGCACGTATGCTCTTCGGGACTTAGCCTGGAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
14053287 CATATATAAC
Statistics
Matches: 280, Mismatches: 32, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
39 34 0.12
40 245 0.88
41 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:14054836 original size:46 final size:46
Alignment explanation
Indices: 14054783--14054919 Score: 220
Period size: 46 Copynumber: 3.0 Consensus size: 46
14054773 TATATATACA
* * *
14054783 CATCTCATACACATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
14054829 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
*
14054875 CATCTCATACACATTTTGCATTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
14054920 ATACACTTCC
Statistics
Matches: 83, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 83 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:14054964 original size:47 final size:47
Alignment explanation
Indices: 14054893--14055318 Score: 584
Period size: 47 Copynumber: 9.1 Consensus size: 47
14054883 ACACATTTTG
* * * * * *
14054893 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
*
14054940 CATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * *
14054987 CATTGGTCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * * * *
14055034 CATTTGTCATTCGACCTTATCACACATATGCATGTTCACCTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
14055081 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * *
14055128 CATTTGCCATTCAGCCTTGTCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
14055175 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * *
14055222 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCATATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * **
14055269 CATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
14055316 CAT
1 CAT
14055319 AAAATCCTAA
Statistics
Matches: 340, Mismatches: 38, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
46 1 0.00
47 339 1.00
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.34
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:14065890 original size:75 final size:75
Alignment explanation
Indices: 14065764--14065905 Score: 205
Period size: 75 Copynumber: 1.9 Consensus size: 75
14065754 GGAAAACTAA
* * * *
14065764 GATTATTCACTTATTAATATAGAAGGCAAATGGAAAGTTAGAAAGAGGAATTATATTCTTTCCAA
1 GATTATTCACTTATTAATAGAGAAGACAAATAGAAAGTTAGAAAAAGGAATTATATTCTTTCCAA
14065829 AAGAATATAG
66 AAGAATATAG
* * *
14065839 GATTATTC-CTTTATTCATAGAGAAGACAAATAGAAAGTTAGAAAAATGAATTATATTCTTTTCA
1 GATTATTCAC-TTATTAATAGAGAAGACAAATAGAAAGTTAGAAAAAGGAATTATATTCTTTCCA
14065903 AAA
65 AAA
14065906 CACAATTAAT
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
74 1 0.02
75 58 0.98
ACGTcount: A:0.44, C:0.08, G:0.15, T:0.32
Consensus pattern (75 bp):
GATTATTCACTTATTAATAGAGAAGACAAATAGAAAGTTAGAAAAAGGAATTATATTCTTTCCAA
AAGAATATAG
Found at i:14066401 original size:140 final size:140
Alignment explanation
Indices: 14065887--14066436 Score: 715
Period size: 140 Copynumber: 4.0 Consensus size: 140
14065877 TAGAAAAATG
* * * *
14065887 AATTATATTCTTTTCAAAACA-CA-ATTAATATT-CATGTCTTTTATATTTTGCCCGAAATTCAT
1 AATTATATTC-TTTCAAAA-AGAATATTAAT-TTCCATGTCTTTTATATTTTGACCAAAATTAAT
* * *
14065949 TAATATAAATGTTTATATTAATAAATTTGGTAAACTATATACAATTAATATTTTGTATGAATCAA
63 TAATATAACTATTTATATTAATAAATTTGGTAAAATATATACAATTAATATTTTGTATGAATCAA
14066014 ATTC--ATATATT
128 ATTCATATATATT
* * * * * **
14066025 AATTATATTCTTTCCAAAAGAATATTAATTTCCATATCTTTAATGTTTTGACCAAAATTATTTCG
1 AATTATATTCTTTCAAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCAAAATTAATTAA
* *
14066090 TATAACT-GTT-TA-T-ATAAATTTGGTAAAATATATACAATTAATATTTTGTACGAATCAAATT
66 TATAACTATTTATATTAATAAATTTGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
14066151 CATATATATT
131 CATATATATT
* * ** * * * *
14066161 AGTTATATTTTTTC-AAAAGAATATTAATTTTTAGGTCTTTTATTTTTTTACCGAAATTAATTAA
1 AATTATATTCTTTCAAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCAAAATTAATTAA
* * * * *
14066225 TATCACTATTTATATTAATATATTCGATAAAATATATACAATTAATATTTTGTATGGATCAAATT
66 TATAACTATTTATATTAATAAATTTGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
14066290 CATATATATT
131 CATATATATT
*
14066300 AATTATATTCTTTCAAAAAGAATATTAATTTCCATGTGTTTTATATTTTGACCAAAATTAATTAA
1 AATTATATTCTTTCAAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCAAAATTAATTAA
* *
14066365 TATAACTATTTATATTAATAAATTTGGCAAAATATATACAATTAATATTTTGTATGAATAAAATT
66 TATAACTATTTATATTAATAAATTTGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
14066430 CATATAT
131 CATATAT
14066437 TAATCATATT
Statistics
Matches: 351, Mismatches: 51, Indels: 18
0.84 0.12 0.04
Matches are distributed among these distances:
134 47 0.13
135 46 0.13
136 24 0.07
137 14 0.04
138 47 0.13
139 65 0.19
140 108 0.31
ACGTcount: A:0.40, C:0.09, G:0.06, T:0.45
Consensus pattern (140 bp):
AATTATATTCTTTCAAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCAAAATTAATTAA
TATAACTATTTATATTAATAAATTTGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
CATATATATT
Found at i:14068967 original size:55 final size:52
Alignment explanation
Indices: 14068859--14069113 Score: 227
Period size: 55 Copynumber: 4.8 Consensus size: 52
14068849 ATTAGGGTTT
* * *
14068859 AAGGATACCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGTCAA-ACATGGC-ATTGGTAA-G-TTCATAAGGC
* * *
14068914 AAGGAAATCATGTAAGACCATGTCAATACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAA-ACATGGCATTGGTAAGTT-C-ATAAGGC
* * *
14068969 AAAGG-TCCCATGTAAGACCATGCCAAAGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAA-CATGGCATTGGTAAGTTCATAAGGC
*
14069022 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT--TCAA---
1 AAGGATACCATGTAAGACCATGTCAA-ACATGGCATTGGTAAGTTCAT-AAGGC
* * * *
14069071 AAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGTCAA-ACATGGCATTGGTAAG
14069114 GTACCCACGT
Statistics
Matches: 172, Mismatches: 20, Indels: 22
0.80 0.09 0.10
Matches are distributed among these distances:
49 40 0.23
51 1 0.01
52 8 0.05
53 43 0.25
54 10 0.06
55 66 0.38
56 4 0.02
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.22
Consensus pattern (52 bp):
AAGGATACCATGTAAGACCATGTCAAACATGGCATTGGTAAGTTCATAAGGC
Found at i:14069065 original size:108 final size:110
Alignment explanation
Indices: 14068866--14069066 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
14068856 TTTAAGGATA
* *
14068866 CCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAAGCATGACAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
* *
14068931 CCATGTCAATACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * *
14068976 CCATGTAAGACCATGCCAAAGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAAGCATGACAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
14069038 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
14069067 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.57
109 7 0.09
110 25 0.30
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAAGCATGACAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:14073285 original size:18 final size:18
Alignment explanation
Indices: 14073262--14073325 Score: 94
Period size: 18 Copynumber: 3.6 Consensus size: 18
14073252 CTTGGCCCAT
14073262 TGCAGTAACAATAAAT-AG
1 TGCAGTAACAAT-AATCAG
*
14073280 TGCAGTAACAGTAATCAG
1 TGCAGTAACAATAATCAG
*
14073298 TGCAGTAACAATAATCAA
1 TGCAGTAACAATAATCAG
14073316 TGCAGTAACA
1 TGCAGTAACA
14073326 GTATACAAGT
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
17 3 0.07
18 39 0.93
ACGTcount: A:0.45, C:0.16, G:0.17, T:0.22
Consensus pattern (18 bp):
TGCAGTAACAATAATCAG
Found at i:14073687 original size:27 final size:27
Alignment explanation
Indices: 14073653--14073878 Score: 249
Period size: 27 Copynumber: 8.3 Consensus size: 27
14073643 CAAATAGGGT
*
14073653 AAACTAGTCATCTTACCATATAAGGGCA
1 AAAC-AGTCATCTTACCACATAAGGGCA
* * *
14073681 AAATAGTCATTTTACCACATATGGGCA
1 AAACAGTCATCTTACCACATAAGGGCA
* *
14073708 AAACAGTCATCTTACCACATAAGAGAA
1 AAACAGTCATCTTACCACATAAGGGCA
* * *
14073735 AAATAGTCAT-TCTACCATATAAGGGAA
1 AAACAGTCATCT-TACCACATAAGGGCA
* *
14073762 AAATAATCATCTTACCACATATA-GGCA
1 AAACAGTCATCTTACCACATA-AGGGCA
* * *
14073789 AAACAATCATTTTACCTCATAAGGGCA
1 AAACAGTCATCTTACCACATAAGGGCA
* *
14073816 AAACAGTCATCTTACCTCATAAGGGTA
1 AAACAGTCATCTTACCACATAAGGGCA
* *
14073843 AAACAATCATTTTACCACATAAGGGCA
1 AAACAGTCATCTTACCACATAAGGGCA
14073870 AAACAGTCA
1 AAACAGTCA
14073879 AACAGTGAAA
Statistics
Matches: 168, Mismatches: 26, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
26 2 0.01
27 161 0.96
28 5 0.03
ACGTcount: A:0.42, C:0.21, G:0.12, T:0.24
Consensus pattern (27 bp):
AAACAGTCATCTTACCACATAAGGGCA
Found at i:14073740 original size:54 final size:54
Alignment explanation
Indices: 14073653--14073878 Score: 283
Period size: 54 Copynumber: 4.2 Consensus size: 54
14073643 CAAATAGGGT
* * * *
14073653 AAACTAGTCATCTTACCATATAAGGGCAAAATAGTCATTTTACCACATATGGGCA
1 AAAC-AGTCATCTTACCACATAAGGGCAAAACAATCATTTTACCACATAAGGGCA
* * * * * * *
14073708 AAACAGTCATCTTACCACATAAGAGAAAAATAGTCATTCTACCATATAAGGGAA
1 AAACAGTCATCTTACCACATAAGGGCAAAACAATCATTTTACCACATAAGGGCA
* * *
14073762 AAATAATCATCTTACCACATATA-GGCAAAACAATCATTTTACCTCATAAGGGCA
1 AAACAGTCATCTTACCACATA-AGGGCAAAACAATCATTTTACCACATAAGGGCA
* *
14073816 AAACAGTCATCTTACCTCATAAGGGTAAAACAATCATTTTACCACATAAGGGCA
1 AAACAGTCATCTTACCACATAAGGGCAAAACAATCATTTTACCACATAAGGGCA
14073870 AAACAGTCA
1 AAACAGTCA
14073879 AACAGTGAAA
Statistics
Matches: 147, Mismatches: 22, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
53 1 0.01
54 141 0.96
55 5 0.03
ACGTcount: A:0.42, C:0.21, G:0.12, T:0.24
Consensus pattern (54 bp):
AAACAGTCATCTTACCACATAAGGGCAAAACAATCATTTTACCACATAAGGGCA
Found at i:14073792 original size:81 final size:81
Alignment explanation
Indices: 14073657--14073878 Score: 288
Period size: 81 Copynumber: 2.7 Consensus size: 81
14073647 TAGGGTAAAC
* * *
14073657 TAGTCATCTTACCATATAAGGGCAAAATAGTCATTTTACCACATATGGGCAAAACAGTCATCTTA
1 TAGTCATCTTACCATATAAGGGAAAAATAATCATTTTACCACATATAGGCAAAACAGTCATCTTA
14073722 CCACATAAGAGAAAAA
66 CCACATAAGAGAAAAA
* * *
14073738 TAGTCAT-TCTACCATATAAGGGAAAAATAATCATCTTACCACATATAGGCAAAACAATCATTTT
1 TAGTCATCT-TACCATATAAGGGAAAAATAATCATTTTACCACATATAGGCAAAACAGTCATCTT
* * *
14073802 ACCTCATAAGGGCAAAA
65 ACCACATAAGAGAAAAA
* * *
14073819 CAGTCATCTTACC-TCATAAGGGTAAAACAATCATTTTACCACATA-AGGGCAAAACAGTCA
1 TAGTCATCTTACCAT-ATAAGGGAAAAATAATCATTTTACCACATATA-GGCAAAACAGTCA
14073879 AACAGTGAAA
Statistics
Matches: 123, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
80 3 0.02
81 119 0.97
82 1 0.01
ACGTcount: A:0.42, C:0.21, G:0.13, T:0.25
Consensus pattern (81 bp):
TAGTCATCTTACCATATAAGGGAAAAATAATCATTTTACCACATATAGGCAAAACAGTCATCTTA
CCACATAAGAGAAAAA
Found at i:14082590 original size:29 final size:28
Alignment explanation
Indices: 14082526--14082660 Score: 164
Period size: 29 Copynumber: 4.8 Consensus size: 28
14082516 TACATACCTG
* *
14082526 CATATGGCCTACTAGGCCCAATCTCATT
1 CATATGGCCCATTAGGCCCAATCTCATT
* * *
14082554 TATATGGCCCATTTGGCCCAATTTACATT
1 CATATGGCCCATTAGGCCCAATCT-CATT
*
14082583 CATATGGCCCATTAGGCCCAATTCACATT
1 CATATGGCCCATTAGGCCCAA-TCTCATT
14082612 CATATGGCCCATTAGGCCCAATCTCATT
1 CATATGGCCCATTAGGCCCAATCTCATT
* *
14082640 TATATGACCCATCT-GGCCCAA
1 CATATGGCCCAT-TAGGCCCAA
14082661 ATCACATTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
28 42 0.46
29 49 0.53
30 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.14, T:0.30
Consensus pattern (28 bp):
CATATGGCCCATTAGGCCCAATCTCATT
Found at i:14082645 original size:57 final size:56
Alignment explanation
Indices: 14082526--14082672 Score: 172
Period size: 57 Copynumber: 2.6 Consensus size: 56
14082516 TACATACCTG
* * * * *
14082526 CATATGGCCTACTAGGCCCAATCTCATTTATATGGCCCATTTGGCCCAATTTACATT
1 CATATGGCCCATTAGGCCCAATCACA-TTATATGGCCCATTAGGCCCAATCTACATT
14082583 CATATGGCCCATTAGGCCCAATTCACATTCATATGGCCCATTAGGCCCAATCT-CATT
1 CATATGGCCCATTAGGCCCAA-TCACATT-ATATGGCCCATTAGGCCCAATCTACATT
* *
14082640 TATATGACCCATCT-GGCCCAAATCACATTATAT
1 CATATGGCCCAT-TAGGCCC-AATCACATTATAT
14082673 TCATGGTCAT
Statistics
Matches: 79, Mismatches: 7, Indels: 9
0.83 0.07 0.09
Matches are distributed among these distances:
56 4 0.05
57 47 0.59
58 28 0.35
ACGTcount: A:0.27, C:0.29, G:0.13, T:0.31
Consensus pattern (56 bp):
CATATGGCCCATTAGGCCCAATCACATTATATGGCCCATTAGGCCCAATCTACATT
Found at i:14082905 original size:16 final size:16
Alignment explanation
Indices: 14082884--14082942 Score: 91
Period size: 16 Copynumber: 3.7 Consensus size: 16
14082874 GTAGCCAAAC
14082884 TTTCGGCTTTTTGGCA
1 TTTCGGCTTTTTGGCA
14082900 TTTCGGCTTTTTGGCA
1 TTTCGGCTTTTTGGCA
* *
14082916 TTTTGGCTTTTCGGCA
1 TTTCGGCTTTTTGGCA
*
14082932 TTTTGGCTTTT
1 TTTCGGCTTTT
14082943 GCTGATCTAC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 41 1.00
ACGTcount: A:0.05, C:0.17, G:0.24, T:0.54
Consensus pattern (16 bp):
TTTCGGCTTTTTGGCA
Found at i:14082919 original size:24 final size:23
Alignment explanation
Indices: 14082892--14082943 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 23
14082882 ACTTTCGGCT
*
14082892 TTTTGGCATTTCGGCTTTTTGGC
1 TTTTGGCATTTCGGCATTTTGGC
*
14082915 ATTTTGGCTTTTCGGCATTTTGGC
1 -TTTTGGCATTTCGGCATTTTGGC
14082939 TTTTG
1 TTTTG
14082944 CTGATCTACT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 5 0.19
24 21 0.81
ACGTcount: A:0.06, C:0.15, G:0.25, T:0.54
Consensus pattern (23 bp):
TTTTGGCATTTCGGCATTTTGGC
Found at i:14082921 original size:8 final size:8
Alignment explanation
Indices: 14082892--14082943 Score: 63
Period size: 8 Copynumber: 6.6 Consensus size: 8
14082882 ACTTTCGGCT
14082892 TTTTGGCA
1 TTTTGGCA
* *
14082900 TTTCGGCT
1 TTTTGGCA
14082908 TTTTGGCA
1 TTTTGGCA
14082916 TTTTGGC-
1 TTTTGGCA
14082923 TTTTCGGCA
1 TTTT-GGCA
14082932 TTTTGGC-
1 TTTTGGCA
14082939 TTTTG
1 TTTTG
14082944 CTGATCTACT
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
7 9 0.24
8 25 0.66
9 4 0.11
ACGTcount: A:0.06, C:0.15, G:0.25, T:0.54
Consensus pattern (8 bp):
TTTTGGCA
Found at i:14090598 original size:28 final size:28
Alignment explanation
Indices: 14090482--14090590 Score: 114
Period size: 28 Copynumber: 3.9 Consensus size: 28
14090472 CCCACTAGGT
* *
14090482 CCAATCTCATTTATATGGTCTACTC-GGC
1 CCAATCTCATTTATATGGCCCA-TCAGGC
* *
14090510 CTAAT-TCATGTTCAAATGGCCCATCAGGC
1 CCAATCTCAT-TT-ATATGGCCCATCAGGC
* * *
14090539 CCAATCTCATTCATATGGCCCATTAGAC
1 CCAATCTCATTTATATGGCCCATCAGGC
14090567 CCAATCTCATTTATATGGCCCATC
1 CCAATCTCATTTATATGGCCCATC
14090591 CGGTCCAAAT
Statistics
Matches: 66, Mismatches: 11, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
27 4 0.06
28 43 0.65
29 15 0.23
30 4 0.06
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.31
Consensus pattern (28 bp):
CCAATCTCATTTATATGGCCCATCAGGC
Found at i:14090608 original size:28 final size:27
Alignment explanation
Indices: 14090525--14090610 Score: 100
Period size: 28 Copynumber: 3.1 Consensus size: 27
14090515 TCATGTTCAA
14090525 ATGGCCCATCAGGCCCAATCTCATTCAT
1 ATGGCCCATCAGGCCCAATCTCATT-AT
* *
14090553 ATGGCCCATTAGACCCAATCTCATTTAT
1 ATGGCCCATCAGGCCCAATCTCA-TTAT
* * *
14090581 ATGGCCCATCCGGTCCAAATCACATTAT
1 ATGGCCCATCAGG-CCCAATCTCATTAT
14090609 AT
1 AT
14090611 TCATGCTCAC
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
28 39 0.80
29 10 0.20
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (27 bp):
ATGGCCCATCAGGCCCAATCTCATTAT
Found at i:14090862 original size:16 final size:16
Alignment explanation
Indices: 14090821--14090863 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
14090811 GTAGCCAAAC
*
14090821 TTTTGGCTTTTTGGCA
1 TTTTGGCTTTTCGGCA
*
14090837 TTCTGGCTTTTCGGCA
1 TTTTGGCTTTTCGGCA
*
14090853 TTTTGTCTTTT
1 TTTTGGCTTTT
14090864 GTCGATCTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.05, C:0.16, G:0.21, T:0.58
Consensus pattern (16 bp):
TTTTGGCTTTTCGGCA
Found at i:14094049 original size:46 final size:46
Alignment explanation
Indices: 14093982--14094157 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
14093972 TGTAACCCGC
*
14093982 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCTT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACGTTCGCTT
* * * *
14094028 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACG-TTCGCTT
* * * *
14094074 ACATCTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCA--TAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCTT
* *
14094121 CCATAAGTGAACTCCGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
14094158 TGCTCAATCA
Statistics
Matches: 107, Mismatches: 17, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
45 4 0.04
46 67 0.63
47 34 0.32
48 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCTT
Found at i:14094101 original size:93 final size:93
Alignment explanation
Indices: 14093989--14094160 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
14093979 CGCCCATAAG
* * *
14093989 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCTTCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCCGACTCAACTC
14094053 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
14094082 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCCGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCCGACTCAACTCA
14094147 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
14094161 TCAATCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCCGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:14105818 original size:27 final size:27
Alignment explanation
Indices: 14105784--14105928 Score: 175
Period size: 27 Copynumber: 5.4 Consensus size: 27
14105774 TGGATAAGTT
* *
14105784 GTAGAATTACTAAAATACCCCTGTAAG
1 GTAGAATTACTGAAATACCCCTGTAGG
* *
14105811 GTAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
* * *
14105838 GTAAAACTATTGAAATACCCCTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
14105865 GTAGAATTA-TCGAAATACCCCTGTAGG
1 GTAGAATTACT-GAAATACCCCTGTAGG
* * *
14105892 GTAGAATTACTGAGATACCCTTGTGGG
1 GTAGAATTACTGAAATACCCCTGTAGG
*
14105919 GTAAAATTAC
1 GTAGAATTAC
14105929 CATTTTGCCC
Statistics
Matches: 101, Mismatches: 15, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
26 1 0.01
27 99 0.98
28 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (27 bp):
GTAGAATTACTGAAATACCCCTGTAGG
Found at i:14105910 original size:54 final size:54
Alignment explanation
Indices: 14105784--14105929 Score: 193
Period size: 54 Copynumber: 2.7 Consensus size: 54
14105774 TGGATAAGTT
* * *
14105784 GTAGAATTACTAAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGG
* * * *
14105838 GTAAAACTATTGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGG
* * * *
14105892 GTAGAATTACTGAGATACCCTTGTGGGGTAAAATTACC
1 GTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACC
14105930 ATTTTGCCCT
Statistics
Matches: 77, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 77 1.00
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.27
Consensus pattern (54 bp):
GTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGG
Done.