Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 41 of 284
Found at i:14421475 original size:16 final size:17
Alignment explanation
Indices: 14421443--14421475 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
14421433 AAATAAGAAG
14421443 GGTTTTCAATGAAAACAT
1 GGTTTTCAA-GAAAACAT
14421461 GGTTTTCAA-AAAACA
1 GGTTTTCAAGAAAACA
14421476 CTTTAATGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (17 bp):
GGTTTTCAAGAAAACAT
Found at i:14423567 original size:17 final size:19
Alignment explanation
Indices: 14423528--14423569 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
14423518 TGGGCCACGT
14423528 TGGGCCAAACTGGGCTGTG
1 TGGGCCAAACTGGGCTGTG
*
14423547 TGGGCCAAA-TTGGCT-TG
1 TGGGCCAAACTGGGCTGTG
14423564 TGGGCC
1 TGGGCC
14423570 CACACGGATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 8 0.36
18 5 0.23
19 9 0.41
ACGTcount: A:0.14, C:0.21, G:0.40, T:0.24
Consensus pattern (19 bp):
TGGGCCAAACTGGGCTGTG
Found at i:14424041 original size:27 final size:27
Alignment explanation
Indices: 14424011--14424164 Score: 118
Period size: 27 Copynumber: 5.8 Consensus size: 27
14424001 ACCCATGATC
* **
14424011 TGTAAAATTACTTAAATACCTTCGGCT
1 TGTAAAATTACTGAAATACCTTCGATT
* ** *
14424038 TGTAAAATTACAGAAAT-CCCCCAATT
1 TGTAAAATTACTGAAATACCTTCGATT
**
14424064 TGTAAAATTACCAAAATACCCTT-GATT
1 TGTAAAATTACTGAAATA-CCTTCGATT
* * *
14424091 TGTAAAATTATTGAAATACCCTTAG-GT
1 TGTAAAATTACTGAAATA-CCTTCGATT
*
14424118 TGTAAAATTACTGAAATACCCTCGATT
1 TGTAAAATTACTGAAATACCTTCGATT
* * *
14424145 TATGAAATTACCG-AATACCT
1 TGTAAAATTACTGAAATACCT
14424165 CTATAGGGTA
Statistics
Matches: 99, Mismatches: 24, Indels: 9
0.75 0.18 0.07
Matches are distributed among these distances:
26 29 0.29
27 67 0.68
28 3 0.03
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.33
Consensus pattern (27 bp):
TGTAAAATTACTGAAATACCTTCGATT
Found at i:14424094 original size:53 final size:54
Alignment explanation
Indices: 14424011--14424163 Score: 141
Period size: 54 Copynumber: 2.9 Consensus size: 54
14424001 ACCCATGATC
* ** *
14424011 TGTAAAATTACTTAAATA-CCTTCGGCTTGTAAAATTACAGAAAT-CCCCCAATT
1 TGTAAAATTACTAAAATACCCTT-GATTTGTAAAATTACAGAAATACCCCCAAGT
* ** ** *
14424064 TGTAAAATTACCAAAATACCCTTGATTTGTAAAATTATTGAAATACCCTTAGGT
1 TGTAAAATTACTAAAATACCCTTGATTTGTAAAATTACAGAAATACCCCCAAGT
* * * * *
14424118 TGTAAAATTACTGAAATACCCTCGATTTATGAAATTACCG-AATACC
1 TGTAAAATTACTAAAATACCCTTGATTTGTAAAATTACAGAAATACC
14424164 TCTATAGGGT
Statistics
Matches: 81, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
53 39 0.48
54 42 0.52
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.33
Consensus pattern (54 bp):
TGTAAAATTACTAAAATACCCTTGATTTGTAAAATTACAGAAATACCCCCAAGT
Found at i:14424163 original size:80 final size:80
Alignment explanation
Indices: 14424001--14424156 Score: 199
Period size: 80 Copynumber: 1.9 Consensus size: 80
14423991 GGTCGTTAAG
* *
14424001 ACCCATGATCTGTAAAATTACTTAAATACCTTCGGCTTGTAAAATTACAGAAATCCCCCAATTTG
1 ACCCATGATCTGTAAAATTACTTAAATACCTTAGGCTTGTAAAATTACAGAAATCCCCCAATTTA
14424066 TAAAATTACCAAAAT
66 TAAAATTACCAAAAT
* * * * *
14424081 ACCCTTGATTTGTAAAATTA-TTGAAATACCCTTAGG-TTGTAAAATTACTGAAATACCCTCGAT
1 ACCCATGATCTGTAAAATTACTT-AAATA-CCTTAGGCTTGTAAAATTACAGAAAT-CCCCCAAT
*
14424144 TTATGAAATTACC
63 TTATAAAATTACC
14424157 GAATACCTCT
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
79 2 0.03
80 40 0.62
81 23 0.35
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (80 bp):
ACCCATGATCTGTAAAATTACTTAAATACCTTAGGCTTGTAAAATTACAGAAATCCCCCAATTTA
TAAAATTACCAAAAT
Found at i:14424188 original size:53 final size:53
Alignment explanation
Indices: 14424064--14424192 Score: 136
Period size: 54 Copynumber: 2.4 Consensus size: 53
14424054 TCCCCCAATT
* * **
14424064 TGTAAAATTACCAAAATACCCTTGATTTGTAAAATTATTGAAATACCCTTAGG
1 TGTAAAATTACCAAAATACCCTCGATTTATAAAATTACCGAAATACCCTTAGG
** *
14424117 TTGTAAAATTACTGAAATACCCTCGATTTATGAAATTACCG-AATACCTCTATAGG
1 -TGTAAAATTACCAAAATACCCTCGATTTATAAAATTACCGAAATACC-CT-TAGG
**
14424172 -GTAGGATTACCAAAATACCCT
1 TGTAAAATTACCAAAATACCCT
14424193 TGTAGGGTAA
Statistics
Matches: 62, Mismatches: 11, Indels: 5
0.79 0.14 0.06
Matches are distributed among these distances:
53 23 0.37
54 35 0.56
55 4 0.06
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.32
Consensus pattern (53 bp):
TGTAAAATTACCAAAATACCCTCGATTTATAAAATTACCGAAATACCCTTAGG
Found at i:14428026 original size:54 final size:54
Alignment explanation
Indices: 14427944--14428093 Score: 300
Period size: 54 Copynumber: 2.8 Consensus size: 54
14427934 GCTGTTAAGT
14427944 CCCAATGGGCTCTTGAGCCCATACGGATAAAATCTACGATAATATCCGTGTAGG
1 CCCAATGGGCTCTTGAGCCCATACGGATAAAATCTACGATAATATCCGTGTAGG
14427998 CCCAATGGGCTCTTGAGCCCATACGGATAAAATCTACGATAATATCCGTGTAGG
1 CCCAATGGGCTCTTGAGCCCATACGGATAAAATCTACGATAATATCCGTGTAGG
14428052 CCCAATGGGCTCTTGAGCCCATACGGATAAAATCTACGATAA
1 CCCAATGGGCTCTTGAGCCCATACGGATAAAATCTACGATAA
14428094 GTGACTATTA
Statistics
Matches: 96, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 96 1.00
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (54 bp):
CCCAATGGGCTCTTGAGCCCATACGGATAAAATCTACGATAATATCCGTGTAGG
Found at i:14428327 original size:27 final size:27
Alignment explanation
Indices: 14428289--14428436 Score: 125
Period size: 27 Copynumber: 5.5 Consensus size: 27
14428279 GACCCCCGAT
**
14428289 TTACTGAAATACCCCTGACTTGTAAAA
1 TTACTGAAATACCCCCAACTTGTAAAA
* *
14428316 TTACTAAAATACCCCCAATTTGTAAAA
1 TTACTGAAATACCCCCAACTTGTAAAA
* *
14428343 TTACTGAAATACCCCCAATTTGAAAAA
1 TTACTGAAATACCCCCAACTTGTAAAA
* * * * ** *
14428370 ATACTAAAACACCCTCAGGTTATAAAA
1 TTACTGAAATACCCCCAACTTGTAAAA
* * * *
14428397 TTAATGAAATACCCTCAATTTGTGAAA
1 TTACTGAAATACCCCCAACTTGTAAAA
**
14428424 TTACCAAAATACC
1 TTACTGAAATACC
14428437 TTTATAGTGT
Statistics
Matches: 96, Mismatches: 25, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 96 1.00
ACGTcount: A:0.43, C:0.22, G:0.07, T:0.28
Consensus pattern (27 bp):
TTACTGAAATACCCCCAACTTGTAAAA
Found at i:14428375 original size:54 final size:54
Alignment explanation
Indices: 14428289--14428436 Score: 170
Period size: 54 Copynumber: 2.7 Consensus size: 54
14428279 GACCCCCGAT
** * * *
14428289 TTACTGAAATACCCCTGACTTGTAAAATTACTAAAATACCCCCAATTTGTAAAA
1 TTACTGAAATACCCCCAATTTGTAAAATTACTAAAATACCCCCAAGTTATAAAA
* * * * *
14428343 TTACTGAAATACCCCCAATTTGAAAAAATACTAAAACACCCTCAGGTTATAAAA
1 TTACTGAAATACCCCCAATTTGTAAAATTACTAAAATACCCCCAAGTTATAAAA
* * * *
14428397 TTAATGAAATACCCTCAATTTGTGAAATTACCAAAATACC
1 TTACTGAAATACCCCCAATTTGTAAAATTACTAAAATACC
14428437 TTTATAGTGT
Statistics
Matches: 77, Mismatches: 17, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 77 1.00
ACGTcount: A:0.43, C:0.22, G:0.07, T:0.28
Consensus pattern (54 bp):
TTACTGAAATACCCCCAATTTGTAAAATTACTAAAATACCCCCAAGTTATAAAA
Found at i:14428864 original size:22 final size:22
Alignment explanation
Indices: 14428809--14428850 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
14428799 GCTGCGTAAT
*
14428809 CTAATTATGGCTCTGTGCCAAC
1 CTAAATATGGCTCTGTGCCAAC
*
14428831 CTAAAAATGGCTCTGTGCCA
1 CTAAATATGGCTCTGTGCCA
14428851 TCTTGACTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (22 bp):
CTAAATATGGCTCTGTGCCAAC
Found at i:14439461 original size:28 final size:28
Alignment explanation
Indices: 14439429--14439484 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
14439419 TCCCCTCAAT
14439429 CTTTCCAATCACATCAACCCCGAAATTC
1 CTTTCCAATCACATCAACCCCGAAATTC
*
14439457 CTTTCCAATCACATCAACCCCGGAATTC
1 CTTTCCAATCACATCAACCCCGAAATTC
14439485 TTTTTATCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.30, C:0.39, G:0.05, T:0.25
Consensus pattern (28 bp):
CTTTCCAATCACATCAACCCCGAAATTC
Found at i:14441735 original size:27 final size:27
Alignment explanation
Indices: 14441687--14441899 Score: 224
Period size: 27 Copynumber: 7.9 Consensus size: 27
14441677 ACGAGGCTGC
* * *
14441687 CAGATATTGTGAC-GAAGTCACCTGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
*
14441714 CAGATATTGTGGCAGAGCCACCATA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
14441740 CAGATATATGTGGTAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
14441767 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
14441794 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
14441821 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
14441848 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
14441875 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
14441900 GACGCTTCCT
Statistics
Matches: 158, Mismatches: 16, Indels: 24
0.80 0.08 0.12
Matches are distributed among these distances:
26 12 0.08
27 139 0.88
28 7 0.04
ACGTcount: A:0.33, C:0.22, G:0.25, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:14441787 original size:54 final size:54
Alignment explanation
Indices: 14441705--14441902 Score: 335
Period size: 54 Copynumber: 3.7 Consensus size: 54
14441695 GTGACGAAGT
* * ** *
14441705 CACCTGATACAGAT-ATTGTGGCAGAGCCACCATAACAGATATATGTGGTAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
14441759 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
14441813 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
14441867 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
14441903 GCTTCCTCCA
Statistics
Matches: 138, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
53 5 0.04
54 133 0.96
ACGTcount: A:0.33, C:0.23, G:0.25, T:0.19
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
Found at i:14449290 original size:17 final size:17
Alignment explanation
Indices: 14449268--14449300 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
14449258 GTTACTGCAC
14449268 ATTGTCATTGCATTTTT
1 ATTGTCATTGCATTTTT
14449285 ATTGTCATTGCATTTT
1 ATTGTCATTGCATTTT
14449301 AATGTTAGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.18, C:0.12, G:0.12, T:0.58
Consensus pattern (17 bp):
ATTGTCATTGCATTTTT
Found at i:14452842 original size:232 final size:232
Alignment explanation
Indices: 14452436--14452899 Score: 910
Period size: 232 Copynumber: 2.0 Consensus size: 232
14452426 ATGCTGATCA
14452436 CTTTTCTCTTCTATGGCAACATCAAATTCTCACTCTAACATGTACTTGTGACTATTAGGTATTTT
1 CTTTTCTCTTCTATGGCAACATCAAATTCTCACTCTAACATGTACTTGTGACTATTAGGTATTTT
14452501 TACCGATTAAGCCCTTTTACTCGTTTTTGCTTAAAATCGAGTAGTACAAGTTGTCTAACATAATT
66 TACCGATTAAGCCCTTTTACTCGTTTTTGCTTAAAATCGAGTAGTACAAGTTGTCTAACATAATT
14452566 TAAAACCCCATATTATATCATAAAACATCAAAATACACAAATTTCACCTATGGGTATTTTTCCAA
131 TAAAACCCCATATTATATCATAAAACATCAAAATACACAAATTTCACCTATGGGTATTTTTCCAA
14452631 ATATAAACCCTAAGTTGAATTATTGCTAACATAAGCT
196 ATATAAACCCTAAGTTGAATTATTGCTAACATAAGCT
14452668 CTTTTCTCTTCTATGGCAACATCAAATTCTCACTCTAACATGTACTTGTGACTATTAGGTATTTT
1 CTTTTCTCTTCTATGGCAACATCAAATTCTCACTCTAACATGTACTTGTGACTATTAGGTATTTT
14452733 TACCGATTAAGCCCTTTTACTCGTTTTTGCTTAAAATCGAGTAGTACAAGTTGTCTAACATAATT
66 TACCGATTAAGCCCTTTTACTCGTTTTTGCTTAAAATCGAGTAGTACAAGTTGTCTAACATAATT
14452798 TAAAACCCCATATTATATCATAAAACATCAAAATACACAAATTTCACCTATGGGTATTTTTCCAA
131 TAAAACCCCATATTATATCATAAAACATCAAAATACACAAATTTCACCTATGGGTATTTTTCCAA
* *
14452863 ATATGAACCCTAGGTTGAATTATTGCTAACATAAGCT
196 ATATAAACCCTAAGTTGAATTATTGCTAACATAAGCT
14452900 TAATCGAGCT
Statistics
Matches: 230, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
232 230 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (232 bp):
CTTTTCTCTTCTATGGCAACATCAAATTCTCACTCTAACATGTACTTGTGACTATTAGGTATTTT
TACCGATTAAGCCCTTTTACTCGTTTTTGCTTAAAATCGAGTAGTACAAGTTGTCTAACATAATT
TAAAACCCCATATTATATCATAAAACATCAAAATACACAAATTTCACCTATGGGTATTTTTCCAA
ATATAAACCCTAAGTTGAATTATTGCTAACATAAGCT
Found at i:14453658 original size:46 final size:46
Alignment explanation
Indices: 14453591--14454358 Score: 1527
Period size: 46 Copynumber: 16.7 Consensus size: 46
14453581 TGTAACCCGC
14453591 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
14453637 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
14453683 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
14453729 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
14453775 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
14453821 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
14453867 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
14453913 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
14453959 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
14454005 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
14454051 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
14454097 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
14454143 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
14454189 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
14454235 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
14454281 CCATAAGTGAACTCGGACTCAACTCAACGAGCTTGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
14454327 CCATAAGTGAACTCGGACTCAACTCAACGAGC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGC
14454359 CCGGATGCCT
Statistics
Matches: 721, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 721 1.00
ACGTcount: A:0.26, C:0.30, G:0.24, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:14454881 original size:30 final size:30
Alignment explanation
Indices: 14454836--14454895 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
14454826 ATTTAATAAG
*
14454836 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
14454866 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
14454896 GGCTCAGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:14459369 original size:24 final size:24
Alignment explanation
Indices: 14459337--14459385 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
14459327 TTTAGTTGCT
14459337 CATAAGCTATTGATTAAACCCATA
1 CATAAGCTATTGATTAAACCCATA
14459361 CATAAGCTATTGATTAAACCCATA
1 CATAAGCTATTGATTAAACCCATA
14459385 C
1 C
14459386 GTGAATTCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (24 bp):
CATAAGCTATTGATTAAACCCATA
Found at i:14459701 original size:47 final size:46
Alignment explanation
Indices: 14459647--14459790 Score: 157
Period size: 47 Copynumber: 3.1 Consensus size: 46
14459637 TTAGGATTTT
14459647 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAA-GTGTATATATGAGATAAGGCCGAATGGCAA
* * * *
14459694 ATGTGATGAATGTGAACATGCATATAT-ATGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAA-GTGTATATATGA-GATAAGGCCGAATGGCAA
* * * *
14459741 ATGTGATGAACGTGGAAGTGTATATATGTGGTCAA-GCCGAATGGCTA
1 ATGTGATGAATGT-GAAGTGTATATATGAGAT-AAGGCCGAATGGCAA
14459788 ATG
1 ATG
14459791 CGAAATGTGT
Statistics
Matches: 81, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
46 1 0.01
47 75 0.93
48 5 0.06
ACGTcount: A:0.35, C:0.09, G:0.29, T:0.27
Consensus pattern (46 bp):
ATGTGATGAATGTGAAGTGTATATATGAGATAAGGCCGAATGGCAA
Found at i:14459824 original size:46 final size:46
Alignment explanation
Indices: 14459764--14460682 Score: 1757
Period size: 46 Copynumber: 20.0 Consensus size: 46
14459754 GGAAGTGTAT
* * *
14459764 ATATGTGGTCAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
14459810 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
14459856 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
14459902 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
14459948 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
14459994 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
14460040 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
14460086 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
14460132 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
14460178 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
14460224 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
14460270 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
14460316 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
14460362 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
14460408 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
14460454 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
14460500 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
14460546 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
14460592 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
* * * * **
14460638 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATG
14460683 TGTATATATA
Statistics
Matches: 864, Mismatches: 9, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
46 864 1.00
ACGTcount: A:0.35, C:0.11, G:0.32, T:0.22
Consensus pattern (46 bp):
ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
Found at i:14466322 original size:30 final size:30
Alignment explanation
Indices: 14466277--14466336 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
14466267 ATTTAATACG
*
14466277 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
14466307 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
14466337 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:14473353 original size:49 final size:51
Alignment explanation
Indices: 14473298--14473421 Score: 173
Period size: 52 Copynumber: 2.5 Consensus size: 51
14473288 TTGAATTTTA
* * *
14473298 AAAACTCTTTTAAATAATAAT-TTAAATTCT-ATTTAATT-TTCTTTTATTT
1 AAAACTCTTTTAAATAATAATATTAAATTATGATTTAATTATT-ATTTATCT
*
14473347 AAAACTCTTTTAAATAATAATAATTAAATTATGTTTTAATTATTATTTATCT
1 AAAACTCTTTTAAATAATAAT-ATTAAATTATGATTTAATTATTATTTATCT
14473399 AAAACTCTTTTAAATAATAATAT
1 AAAACTCTTTTAAATAATAATAT
14473422 ATTTGTTATT
Statistics
Matches: 67, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
49 21 0.31
51 10 0.15
52 34 0.51
53 2 0.03
ACGTcount: A:0.42, C:0.07, G:0.01, T:0.50
Consensus pattern (51 bp):
AAAACTCTTTTAAATAATAATATTAAATTATGATTTAATTATTATTTATCT
Found at i:14473412 original size:38 final size:38
Alignment explanation
Indices: 14473383--14473456 Score: 121
Period size: 38 Copynumber: 1.9 Consensus size: 38
14473373 AATTATGTTT
*
14473383 TAATTATTATTTATCTAAAACTCTTTTAAATAATAATA
1 TAATTATTATTTATCTAAAACTCATTTAAATAATAATA
* *
14473421 TATTTGTTATTTATCTAAAACTCATTTAAATAATAA
1 TAATTATTATTTATCTAAAACTCATTTAAATAATAA
14473457 CTAAATTCTA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.43, C:0.08, G:0.01, T:0.47
Consensus pattern (38 bp):
TAATTATTATTTATCTAAAACTCATTTAAATAATAATA
Found at i:14474566 original size:3 final size:3
Alignment explanation
Indices: 14474558--14474583 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
14474548 TAAACATGCA
14474558 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
14474584 ATTCATTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:14477142 original size:125 final size:126
Alignment explanation
Indices: 14476764--14479106 Score: 2008
Period size: 125 Copynumber: 19.0 Consensus size: 126
14476754 TTCAGTTAAA
* * * * * *
14476764 AAAAGTACTGAAATAAGCTCCTAGC-TGGACTCTATTTTTCTATACTAGTTTCTGAAAAAATAAT
1 AAAAGTACTGAAAAAAGCTCCCA-CTTAGACACTCTTTTTCTATAGTAGTTTCTGAAAAAATAAT
* * * *
14476828 TTTGAGAAGATGGTCCTGACAAAATAGGGTAAAAAACGCTTCAAACAGAATGCACTATCAAC
65 TTTGAGAAGATGGTTCTGAAAAAATAGGGTAAAAAACGCTTCAAACAGGATGCACTGTCAAC
*
14476890 AAAAGTTCTGAAAAAAGCTCCCAAC--AGA-A-TGCAATTTTTCTACT-GTAGTTT-TGAAAAAA
1 AAAAGTACTGAAAAAAGCTCCC-ACTTAGACACT-C--TTTTTCTA-TAGTAGTTTCTGAAAAAA
* * * * *
14476949 TAATTTTGAAAAGATGATTCTG-AAAAATAGGGTAAAAAATGCTTCAAGCAGGATACACTGTCAA
61 TAATTTTGAGAAGATGGTTCTGAAAAAATAGGGTAAAAAACGCTTCAAACAGGATGCACTGTCAA
14477013 C
126 C
* * *
14477014 AAAAGTACTGAAAAAAGCTCCCACTTAGACACTCTTTTTCTACAATAGTTTGTGAAAAAATAATT
1 AAAAGTACTGAAAAAAGCTCCCACTTAGACACTCTTTTTCTATAGTAGTTTCTGAAAAAATAATT
* * * * * * *
14477079 TTGAGAATATGGTTCTAAAAAAATATGGT-AAAAACGCTTCAAGCAAGATGCACTGTTAGC
66 TTGAGAAGATGGTTCTGAAAAAATAGGGTAAAAAACGCTTCAAACAGGATGCACTGTCAAC
* * * * *
14477139 AAAAGTACTGAAAAAAGCTCCCACCTGGACGCACTTTTTCT-TCAATAGTTTCTG-AAAAATAAT
1 AAAAGTACTGAAAAAAGCTCCCACTTAGACACTCTTTTTCTAT-AGTAGTTTCTGAAAAAATAAT
* * *
14477202 TTTGAGAAGATGGTTCTGAAAAGATAAGGTCAAAAAACGCTTCAAACATGATGCACTGTCAAC
65 TTTGAGAAGATGGTTCTGAAAAAATAGGGT-AAAAAACGCTTCAAACAGGATGCACTGTCAAC
*
14477265 AAAAGTACTGAAAAAAGCTCCCACCT-GAACACTCTTTTTCTATAGTAGTTTCTG-AAAAATAA-
1 AAAAGTACTGAAAAAAGCTCCCACTTAG-ACACTCTTTTTCTATAGTAGTTTCTGAAAAAATAAT
* * * *
14477327 TTTGAGAAGATGGTTCTG-------ACGGTAAAAAACACTTCAAACAGGATGCACTATCAGC
65 TTTGAGAAGATGGTTCTGAAAAAATAGGGTAAAAAACGCTTCAAACAGGATGCACTGTCAAC
* * * * * *
14477382 AAAAGTACT-AAAAAAGCTCCTAGTTGGACGCTCTTTTACTACT-GTAGTTTTTGAAAAAATAAT
1 AAAAGTACTGAAAAAAGCTCCCACTTAGACACTCTTTTTCTA-TAGTAGTTTCTGAAAAAATAAT
* * * * * * *
14477445 TTTAAAAAGATGGTTAT-AGAAAAATAGGGTGAAAAACACTTCACGA-AGGATACACTGTCAAC
65 TTTGAGAAGATGGTTCTGA-AAAAATAGGGTAAAAAACGCTTCA-AACAGGATGCACTGTCAAC
* * * * *
14477507 AAAAGTATTGAAAAAAACTCCCACTTAGACACTCTTTTTCTACAGTAGTTTTTGAAAAAATGATT
1 AAAAGTACTGAAAAAAGCTCCCACTTAGACACTCTTTTTCTATAGTAGTTTCTGAAAAAATAATT
* * * * * * *
14477572 TTGAAAAGATGGTTCT-AAAAAATATGGTAAAAAACGCTTTAAGCAAGATGCACTGTTAGC
66 TTGAGAAGATGGTTCTGAAAAAATAGGGTAAAAAACGCTTCAAACAGGATGCACTGTCAAC
* *
14477632 AAAAGTACTGAAAAAAGCTCCCACTTAGACGCTCTTTTTCTATAATAGTTTCTG-AAAAATAATT
1 AAAAGTACTGAAAAAAGCTCCCACTTAGACACTCTTTTTCTATAGTAGTTTCTGAAAAAATAATT
* * * * * *
14477696 TTAAGAAGATGGTTCTGAAAAGATAAGGTCAAAAACGCTTCAAACAGGATGTATTGTCAAC
66 TTGAGAAGATGGTTCTGAAAAAATAGGGTAAAAAACGCTTCAAACAGGATGCACTGTCAAC
* *
14477757 AAAAGTACTGAAAAAAGCTCCCACTTAGACGCTCTTTTTCTATAATAGTTTCTG-AAAAATAATT
1 AAAAGTACTGAAAAAAGCTCCCACTTAGACACTCTTTTTCTATAGTAGTTTCTGAAAAAATAATT
* * * * * *
14477821 TTAAGAAGATGGTTCTGAAAAGATAAGGTCAAAAACGCTTCAAACAGGATGTATTGTCAAC
66 TTGAGAAGATGGTTCTGAAAAAATAGGGTAAAAAACGCTTCAAACAGGATGCACTGTCAAC
* *
14477882 AAAAGTACTGAAAAAAGCTCCCACTTAGACGCTCTTTTTCTATAATAGTTTCTG-AAAAATAATT
1 AAAAGTACTGAAAAAAGCTCCCACTTAGACACTCTTTTTCTATAGTAGTTTCTGAAAAAATAATT
* * * * * *
14477946 TTAAGAAGATGGTTCTGAAAAGATAAGGTCAAAAACGCTTCAAACAGGATGTATTGTCAAC
66 TTGAGAAGATGGTTCTGAAAAAATAGGGTAAAAAACGCTTCAAACAGGATGCACTGTCAAC
* * *
14478007 AAAAGTACTGAAAAAAGCTCCCACCT-GAACATTCTTTTTCTATAGTAGTTTTTGAAAAAATAAT
1 AAAAGTACTGAAAAAAGCTCCCACTTAG-ACACTCTTTTTCTATAGTAGTTTCTGAAAAAATAAT
* * * * * *
14478071 TTTGAGAAGATGGTTCCGACAAAATAGGGTAAAAAACGCTTCAACCATGATGCACTATCAGC
65 TTTGAGAAGATGGTTCTGAAAAAATAGGGTAAAAAACGCTTCAAACAGGATGCACTGTCAAC
* * ** * *
14478133 AAAAGTACT-AAAAAAGCTCCCAGTTGGATGCTATTTTTCTACT-GTAGTTTTTGAAAAAATAAT
1 AAAAGTACTGAAAAAAGCTCCCACTTAGACACTCTTTTTCTA-TAGTAGTTTCTGAAAAAATAAT
* * * * * * * * * *
14478196 TTTAAAAATATGGTT-TTAGAAAAATAGGG-AAGGATACACTGTC-AACA-AAAGTACTG--AA-
65 TTTGAGAAGATGGTTCTGA-AAAAATAGGGTAA-AAAACGCT-TCAAACAGGATGCACTGTCAAC
* * ** * **
14478254 AAAAG--CT--------C-CCAC-CTGAACATTCT-TTTTCTATAGTAGT--TTTTG-AAAAAAT
1 AAAAGTACTGAAAAAAGCTCC-CACT-TAGACACTCTTTT-TCTA-TAGTAGTTTCTGAAAAAAT
* * * * * * * * * *
14478303 AATTTTAAAAATATGGTT-TTAGAAAAATAGGG-AAGGATACACTGTC-AACA-AAAGTACTG--
62 AATTTTGAGAAGATGGTTCTGA-AAAAATAGGGTAA-AAAACGCT-TCAAACAGGATGCACTGTC
14478362 AA-
124 AAC
*** * * * **
14478364 AAAA--ACT---CCCA-CT--TA--GACACTA-T-TTTTCTAC-AGTAGT--TTCT-GAACAAAT
1 AAAAGTACTGAAAAAAGCTCCCACTTAGAC-ACTCTTTT-T-CTA-TAGTAGTT-TCTGA-AAA-
** * * * * * * *
14478413 AAT--TTTGAAA-AGATGGTT-TTAAAAAATATGGTAAAAAACGCTTCAAGCAAGACGCACTGTT
59 AATAATTTTGAGAAGATGGTTCTGAAAAAATAGGGTAAAAAACGCTTCAAACAGGATGCACTGTC
*
14478474 AGC
124 AAC
* * *
14478477 AAAAGTACTGAAAAAAGCTCCCACTTGGACGCTCTTTTTCTATAATAGTTTCTG-AAAAATAATT
1 AAAAGTACTGAAAAAAGCTCCCACTTAGACACTCTTTTTCTATAGTAGTTTCTGAAAAAATAATT
* * * * * *
14478541 TTAAGAAGATGGTTTTGAAAAGATAAGGTCAAAAACGCTTCAAACAGGATGCATTGTCAAC
66 TTGAGAAGATGGTTCTGAAAAAATAGGGTAAAAAACGCTTCAAACAGGATGCACTGTCAAC
* *
14478602 AAAAGTACTGAAAAAAGCTCCCACCTGGACACTCTTTTTCTATAGTAGTTTCTG-AAAAATAATT
1 AAAAGTACTGAAAAAAGCTCCCACTTAGACACTCTTTTTCTATAGTAGTTTCTGAAAAAATAATT
* *
14478666 TTGAGAAGATGGTTCTGACAAAATAGGGT-AAAAACGCTTCAAACAGGATGCATTGTCAAC
66 TTGAGAAGATGGTTCTGAAAAAATAGGGTAAAAAACGCTTCAAACAGGATGCACTGTCAAC
* *
14478726 AAAAGTACTGAAAAAAGCTCCCACCTGGACACTCTTTTTCTATAGTAGTTTCTG-AAAAATAATT
1 AAAAGTACTGAAAAAAGCTCCCACTTAGACACTCTTTTTCTATAGTAGTTTCTGAAAAAATAATT
* * **
14478790 TTGAGAAGATGGTTCTGACAAAATAGGGT-AAAAACGCTTCAAACAGGATGCACTATCAGT
66 TTGAGAAGATGGTTCTGAAAAAATAGGGTAAAAAACGCTTCAAACAGGATGCACTGTCAAC
* * * * * * *
14478850 AAAAGTACT-AAAAAAGCTCCTAGTTGGACGCTATTTTTCTATTGTAGTTTTTGAAAAAATAATT
1 AAAAGTACTGAAAAAAGCTCCCACTTAGACACTCTTTTTCTATAGTAGTTTCTGAAAAAATAATT
* * * * * * *
14478914 TTAAAAAGATGGTTAT-AGAAAAATAGGGTAAAAAACACTTCACGA-AGGATACACT-TCCAGC
66 TTGAGAAGATGGTTCTGA-AAAAATAGGGTAAAAAACGCTTCA-AACAGGATGCACTGT-CAAC
* * *
14478975 AAAAGTACTGAAAAAAGCTCCCA-TGAAGACACTCTTTTTCTACAGTAGTTTTTGAAAAAATAAT
1 AAAAGTACTGAAAAAAGCTCCCACT-TAGACACTCTTTTTCTATAGTAGTTTCTGAAAAAATAAT
* * * * * * *
14479039 TTTGAGAATATGGTTTTAAAAAAATATGGTAAAAAATGCTTCAAGCAGGATGCACTGTCAGC
65 TTTGAGAAGATGGTTCTGAAAAAATAGGGTAAAAAACGCTTCAAACAGGATGCACTGTCAAC
14479101 AAAAGT
1 AAAAGT
14479107 GTAATAACCC
Statistics
Matches: 1888, Mismatches: 235, Indels: 188
0.82 0.10 0.08
Matches are distributed among these distances:
108 2 0.00
109 17 0.01
110 111 0.06
111 19 0.01
112 14 0.01
113 9 0.00
114 1 0.00
115 3 0.00
116 34 0.02
117 47 0.02
118 19 0.01
119 4 0.00
121 9 0.00
122 8 0.00
123 52 0.03
124 347 0.18
125 825 0.44
126 361 0.19
127 6 0.00
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.29
Consensus pattern (126 bp):
AAAAGTACTGAAAAAAGCTCCCACTTAGACACTCTTTTTCTATAGTAGTTTCTGAAAAAATAATT
TTGAGAAGATGGTTCTGAAAAAATAGGGTAAAAAACGCTTCAAACAGGATGCACTGTCAAC
Found at i:14477756 original size:250 final size:250
Alignment explanation
Indices: 14476764--14479106 Score: 2509
Period size: 250 Copynumber: 9.5 Consensus size: 250
14476754 TTCAGTTAAA
* * * * * *
14476764 AAAAGTACTGAAATAAGCTCCTAGC-TGGACTCTATTTTTCTATACTAGTTTCTGAAAAAATAAT
1 AAAAGTACTGAAAAAAGCTCCCA-CTTAGACACTCTTTTTCTATAGTAGTTTCTGAAAAAATAAT
* * * * *
14476828 TTTGAGAAGATGGTCCTGACAAAATAGGGTAAAAAACGCTTCAAACAGAATGCACTATCAACAAA
65 TTTGAGAAGATGGTTCTGAAAAAATAGGGTAAAAAACGCTTCAAACAGGATGCACTGTCAGCAAA
* * * * **
14476893 AGTTCTGAAAAAAGCTCCCAAC-AGAATGCAATTTTTCTACT-GTAGTTT-TGAAAAAATAATTT
130 AGTACTGAAAAAAGCTCCC-ACTTGGACGCTCTTTTTCTA-TAGTAGTTTCTG-AAAAATAATTT
* * * * *
14476955 TGAA-AAGATGATTCTGAAAAATAGGGTAAAAAATGCTTCAAGCAGGATACACTGTCAAC
192 T-AAGAAGATGGTTCTGAAAAATAAGGTAAAAAACGCTTCAAACAGGATGCACTGTCAAC
* * *
14477014 AAAAGTACTGAAAAAAGCTCCCACTTAGACACTCTTTTTCTACAATAGTTTGTGAAAAAATAATT
1 AAAAGTACTGAAAAAAGCTCCCACTTAGACACTCTTTTTCTATAGTAGTTTCTGAAAAAATAATT
* * * * * *
14477079 TTGAGAATATGGTTCTAAAAAAATATGGT-AAAAACGCTTCAAGCAAGATGCACTGTTAGCAAAA
66 TTGAGAAGATGGTTCTGAAAAAATAGGGTAAAAAACGCTTCAAACAGGATGCACTGTCAGCAAAA
* * * *
14477143 GTACTGAAAAAAGCTCCCACCTGGACGCACTTTTTCT-TCAATAGTTTCTGAAAAATAATTTTGA
131 GTACTGAAAAAAGCTCCCACTTGGACGCTCTTTTTCTAT-AGTAGTTTCTGAAAAATAATTTTAA
*
14477207 GAAGATGGTTCTGAAAAGATAAGGTCAAAAAACGCTTCAAACATGATGCACTGTCAAC
195 GAAGATGGTTCTGAAAA-ATAAGGT-AAAAAACGCTTCAAACAGGATGCACTGTCAAC
*
14477265 AAAAGTACTGAAAAAAGCTCCCACCT-GAACACTCTTTTTCTATAGTAGTTTCTG-AAAAATAA-
1 AAAAGTACTGAAAAAAGCTCCCACTTAG-ACACTCTTTTTCTATAGTAGTTTCTGAAAAAATAAT
* * *
14477327 TTTGAGAAGATGGTTCTG-------ACGGTAAAAAACACTTCAAACAGGATGCACTATCAGCAAA
65 TTTGAGAAGATGGTTCTGAAAAAATAGGGTAAAAAACGCTTCAAACAGGATGCACTGTCAGCAAA
* * * *
14477385 AGTACT-AAAAAAGCTCCTAGTTGGACGCTCTTTTACTACT-GTAGTTTTTGAAAAAATAATTTT
130 AGTACTGAAAAAAGCTCCCACTTGGACGCTCTTTTTCTA-TAGTAGTTTCTG-AAAAATAATTTT
* * * * * * *
14477448 AAAAAGATGGTTATAGAAAAATAGGGTGAAAAACACTTCACGA-AGGATACACTGTCAAC
193 AAGAAGATGGTTCT-GAAAAATAAGGTAAAAAACGCTTCA-AACAGGATGCACTGTCAAC
* * * * *
14477507 AAAAGTATTGAAAAAAACTCCCACTTAGACACTCTTTTTCTACAGTAGTTTTTGAAAAAATGATT
1 AAAAGTACTGAAAAAAGCTCCCACTTAGACACTCTTTTTCTATAGTAGTTTCTGAAAAAATAATT
* * * * * *
14477572 TTGAAAAGATGGTTCT-AAAAAATATGGTAAAAAACGCTTTAAGCAAGATGCACTGTTAGCAAAA
66 TTGAGAAGATGGTTCTGAAAAAATAGGGTAAAAAACGCTTCAAACAGGATGCACTGTCAGCAAAA
* *
14477636 GTACTGAAAAAAGCTCCCACTTAGACGCTCTTTTTCTATAATAGTTTCTGAAAAATAATTTTAAG
131 GTACTGAAAAAAGCTCCCACTTGGACGCTCTTTTTCTATAGTAGTTTCTGAAAAATAATTTTAAG
* * *
14477701 AAGATGGTTCTGAAAAGATAAGGTCAAAAACGCTTCAAACAGGATGTATTGTCAAC
196 AAGATGGTTCTGAAAA-ATAAGGTAAAAAACGCTTCAAACAGGATGCACTGTCAAC
* *
14477757 AAAAGTACTGAAAAAAGCTCCCACTTAGACGCTCTTTTTCTATAATAGTTTCTG-AAAAATAATT
1 AAAAGTACTGAAAAAAGCTCCCACTTAGACACTCTTTTTCTATAGTAGTTTCTGAAAAAATAATT
* * * * * * *
14477821 TTAAGAAGATGGTTCTGAAAAGATAAGGTCAAAAACGCTTCAAACAGGATGTATTGTCAACAAAA
66 TTGAGAAGATGGTTCTGAAAAAATAGGGTAAAAAACGCTTCAAACAGGATGCACTGTCAGCAAAA
* *
14477886 GTACTGAAAAAAGCTCCCACTTAGACGCTCTTTTTCTATAATAGTTTCTGAAAAATAATTTTAAG
131 GTACTGAAAAAAGCTCCCACTTGGACGCTCTTTTTCTATAGTAGTTTCTGAAAAATAATTTTAAG
* * *
14477951 AAGATGGTTCTGAAAAGATAAGGTCAAAAACGCTTCAAACAGGATGTATTGTCAAC
196 AAGATGGTTCTGAAAA-ATAAGGTAAAAAACGCTTCAAACAGGATGCACTGTCAAC
* * *
14478007 AAAAGTACTGAAAAAAGCTCCCACCT-GAACATTCTTTTTCTATAGTAGTTTTTGAAAAAATAAT
1 AAAAGTACTGAAAAAAGCTCCCACTTAG-ACACTCTTTTTCTATAGTAGTTTCTGAAAAAATAAT
* * * * *
14478071 TTTGAGAAGATGGTTCCGACAAAATAGGGTAAAAAACGCTTCAACCATGATGCACTATCAGCAAA
65 TTTGAGAAGATGGTTCTGAAAAAATAGGGTAAAAAACGCTTCAAACAGGATGCACTGTCAGCAAA
* * * *
14478136 AGTACT-AAAAAAGCTCCCAGTTGGATGCTATTTTTCTACT-GTAGTTTTTGAAAAAATAATTTT
130 AGTACTGAAAAAAGCTCCCACTTGGACGCTCTTTTTCTA-TAGTAGTTTCTG-AAAAATAATTTT
* * * *
14478199 AAAAATATGGTTTTAGAAAAAT-AGG--------G------A-AGGATACACTGTCAAC
193 AAGAAGATGGTTCT-GAAAAATAAGGTAAAAAACGCTTCAAACAGGATGCACTGTCAAC
* * *
14478242 AAAAGTACTGAAAAAAGCTCCCACCT-GAACATTCTTTTTCTATAGTAGTTTTTGAAAAAATAAT
1 AAAAGTACTGAAAAAAGCTCCCACTTAG-ACACTCTTTTTCTATAGTAGTTTCTGAAAAAATAAT
* * * * * *
14478306 TTTAAAAATATGGTT-TTAGAAAAATA-GG--------G------A-AGGATACACTGTCAACAA
65 TTTGAGAAGATGGTTCTGA-AAAAATAGGGTAAAAAACGCTTCAAACAGGATGCACTGTCAGCAA
* * * * *
14478354 AAGTACTGAAAAAAACTCCCACTTAGACACTATTTTTCTACAGTAGTTTCTGAACAAATAATTTT
129 AAGTACTGAAAAAAGCTCCCACTTGGACGCTCTTTTTCTATAGTAGTTTCTGAA-AAATAATTTT
* * * * * * * *
14478419 GAA-AAGATGGTTTTAAAAAATATGGTAAAAAACGCTTCAAGCAAGACGCACTGTTAGC
193 -AAGAAGATGGTTCTGAAAAATAAGGTAAAAAACGCTTCAAACAGGATGCACTGTCAAC
* * *
14478477 AAAAGTACTGAAAAAAGCTCCCACTTGGACGCTCTTTTTCTATAATAGTTTCTG-AAAAATAATT
1 AAAAGTACTGAAAAAAGCTCCCACTTAGACACTCTTTTTCTATAGTAGTTTCTGAAAAAATAATT
* * * * * * *
14478541 TTAAGAAGATGGTTTTGAAAAGATAAGGTCAAAAACGCTTCAAACAGGATGCATTGTCAACAAAA
66 TTGAGAAGATGGTTCTGAAAAAATAGGGTAAAAAACGCTTCAAACAGGATGCACTGTCAGCAAAA
* * *
14478606 GTACTGAAAAAAGCTCCCACCTGGACACTCTTTTTCTATAGTAGTTTCTGAAAAATAATTTTGAG
131 GTACTGAAAAAAGCTCCCACTTGGACGCTCTTTTTCTATAGTAGTTTCTGAAAAATAATTTTAAG
* *
14478671 AAGATGGTTCTGACAAAATAGGGT-AAAAACGCTTCAAACAGGATGCATTGTCAAC
196 AAGATGGTTCTGA-AAAATAAGGTAAAAAACGCTTCAAACAGGATGCACTGTCAAC
* *
14478726 AAAAGTACTGAAAAAAGCTCCCACCTGGACACTCTTTTTCTATAGTAGTTTCTG-AAAAATAATT
1 AAAAGTACTGAAAAAAGCTCCCACTTAGACACTCTTTTTCTATAGTAGTTTCTGAAAAAATAATT
* * *
14478790 TTGAGAAGATGGTTCTGACAAAATAGGGT-AAAAACGCTTCAAACAGGATGCACTATCAGTAAAA
66 TTGAGAAGATGGTTCTGAAAAAATAGGGTAAAAAACGCTTCAAACAGGATGCACTGTCAGCAAAA
* * * * *
14478854 GTACT-AAAAAAGCTCCTAGTTGGACGCTATTTTTCTATTGTAGTTTTTGAAAAAATAATTTTAA
131 GTACTGAAAAAAGCTCCCACTTGGACGCTCTTTTTCTATAGTAGTTTCTG-AAAAATAATTTTAA
* * * * * * *
14478918 AAAGATGGTTATAGAAAAATAGGGTAAAAAACACTTCACGA-AGGATACACT-TCCAGC
195 GAAGATGGTTCT-GAAAAATAAGGTAAAAAACGCTTCA-AACAGGATGCACTGT-CAAC
* * *
14478975 AAAAGTACTGAAAAAAGCTCCCA-TGAAGACACTCTTTTTCTACAGTAGTTTTTGAAAAAATAAT
1 AAAAGTACTGAAAAAAGCTCCCACT-TAGACACTCTTTTTCTATAGTAGTTTCTGAAAAAATAAT
* * * * * *
14479039 TTTGAGAATATGGTTTTAAAAAAATATGGTAAAAAATGCTTCAAGCAGGATGCACTGTCAGCAAA
65 TTTGAGAAGATGGTTCTGAAAAAATAGGGTAAAAAACGCTTCAAACAGGATGCACTGTCAGCAAA
14479104 AGT
130 AGT
14479107 GTAATAACCC
Statistics
Matches: 1778, Mismatches: 231, Indels: 167
0.82 0.11 0.08
Matches are distributed among these distances:
219 29 0.02
220 58 0.03
221 2 0.00
226 1 0.00
228 1 0.00
234 31 0.02
235 157 0.09
236 2 0.00
242 111 0.06
243 74 0.04
244 22 0.01
247 38 0.02
248 74 0.04
249 342 0.19
250 592 0.33
251 239 0.13
252 5 0.00
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.29
Consensus pattern (250 bp):
AAAAGTACTGAAAAAAGCTCCCACTTAGACACTCTTTTTCTATAGTAGTTTCTGAAAAAATAATT
TTGAGAAGATGGTTCTGAAAAAATAGGGTAAAAAACGCTTCAAACAGGATGCACTGTCAGCAAAA
GTACTGAAAAAAGCTCCCACTTGGACGCTCTTTTTCTATAGTAGTTTCTGAAAAATAATTTTAAG
AAGATGGTTCTGAAAAATAAGGTAAAAAACGCTTCAAACAGGATGCACTGTCAAC
Found at i:14478283 original size:110 final size:110
Alignment explanation
Indices: 14478123--14478440 Score: 439
Period size: 110 Copynumber: 2.9 Consensus size: 110
14478113 AACCATGATG
* * * * **
14478123 CACTATCAGCAAAAGTACT-AAAAAAGCTCCCAGTTG-GATGCTATTTTTCTACTGTAGTTTTTG
1 CACTGTCAACAAAAGTACTGAAAAAAACTCCCA-CTGAGACACTATTTTTCTACTGTAGTTTTTG
14478186 AAAAAATAATTTTAAAAATATGGTTTTAGAAAAATAGGGAAGGATA
65 AAAAAATAATTTTAAAAATATGGTTTTAGAAAAATAGGGAAGGATA
* * *
14478232 CACTGTCAACAAAAGTACTGAAAAAAGCTCCCACCTGA-ACATTCTTTTTCTA-TAGTAGTTTTT
1 CACTGTCAACAAAAGTACTGAAAAAAACTCCCA-CTGAGACACTATTTTTCTACT-GTAGTTTTT
14478295 GAAAAAATAATTTTAAAAATATGGTTTTAGAAAAATAGGGAAGGATA
64 GAAAAAATAATTTTAAAAATATGGTTTTAGAAAAATAGGGAAGGATA
* * *
14478342 CACTGTCAACAAAAGTACTGAAAAAAACTCCCACTTAGACACTATTTTTCTACAGTAGTTTCTGA
1 CACTGTCAACAAAAGTACTGAAAAAAACTCCCACTGAGACACTATTTTTCTACTGTAGTTTTTGA
* * *
14478407 ACAAATAATTTTGAAAAGATGGTTTTA-AAAAATA
66 AAAAATAATTTTAAAAATATGGTTTTAGAAAAATA
14478441 TGGTAAAAAA
Statistics
Matches: 187, Mismatches: 17, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
109 28 0.15
110 159 0.85
ACGTcount: A:0.42, C:0.13, G:0.14, T:0.31
Consensus pattern (110 bp):
CACTGTCAACAAAAGTACTGAAAAAAACTCCCACTGAGACACTATTTTTCTACTGTAGTTTTTGA
AAAAATAATTTTAAAAATATGGTTTTAGAAAAATAGGGAAGGATA
Found at i:14482119 original size:126 final size:125
Alignment explanation
Indices: 14481833--14482131 Score: 386
Period size: 126 Copynumber: 2.4 Consensus size: 125
14481823 GGATGTTACA
* * *
14481833 AAAAGTACTGAAAAAAGGTCCTACCTAGACGCTCTTTTTCTACAATACTTTCTAAAAAATAATTT
1 AAAAGTACTGAAAAAAGCTCCCACCTAGACACTCTTTTTCTACAATACTTTCTAAAAAATAATTT
* *
14481898 TGAAAAGATGGTTCTAAAAAGATAGGGTCAAAAATGCTTCAAACAGGATGCACTGCCAGC
66 TGAAAAGATGGTTCTAAAAAGATAGGGTCAAAAATGCTTCAAACAAGATGCACTACCAGC
* * ** * *
14481958 AAAAGTACT-AAAAAAACTTCCCTCCT-GAACACTCTTTTTCTGTAGTAGTTTCTGAAAAAATAA
1 AAAAGTACTGAAAAAAGC-TCCCACCTAG-ACACTCTTTTTCTACAATACTTTCT-AAAAAATAA
* * * *
14482021 TTTTGAGAAGATGGTTCTGAAAAGATAGGGTCAAAAATGCTTCAAACAAGATGCATTATCAGC
63 TTTTGAAAAGATGGTTCTAAAAAGATAGGGTCAAAAATGCTTCAAACAAGATGCACTACCAGC
*** *
14482084 AAAAGTACTGAAAAAAGCTCCCACCTAGTTTCTCTTTCTCTACAATAC
1 AAAAGTACTGAAAAAAGCTCCCACCTAGACACTCTTTTTCTACAATAC
14482132 ATCATGCTTG
Statistics
Matches: 144, Mismatches: 25, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
124 7 0.05
125 35 0.24
126 94 0.65
127 8 0.06
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.28
Consensus pattern (125 bp):
AAAAGTACTGAAAAAAGCTCCCACCTAGACACTCTTTTTCTACAATACTTTCTAAAAAATAATTT
TGAAAAGATGGTTCTAAAAAGATAGGGTCAAAAATGCTTCAAACAAGATGCACTACCAGC
Found at i:14482227 original size:25 final size:25
Alignment explanation
Indices: 14482198--14482245 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
14482188 TTACAGCAAG
*
14482198 AGAAATTAGAGAAGTTCAGAAGAAA
1 AGAAATTAGAAAAGTTCAGAAGAAA
* *
14482223 AGAAATTGGAAAAGTTCATAAGA
1 AGAAATTAGAAAAGTTCAGAAGA
14482246 TTATATATTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.54, C:0.04, G:0.23, T:0.19
Consensus pattern (25 bp):
AGAAATTAGAAAAGTTCAGAAGAAA
Found at i:14484364 original size:22 final size:22
Alignment explanation
Indices: 14484336--14484382 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
14484326 TATCCCCATA
*
14484336 TAGAGTGTAG-GGCTGGATGGAG
1 TAGAGTGTAGAGGATGGATGG-G
14484358 TAGAGTGTAGAGGATGGATGGG
1 TAGAGTGTAGAGGATGGATGGG
14484380 TAG
1 TAG
14484383 GACTTCTGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 14 0.61
23 9 0.39
ACGTcount: A:0.26, C:0.02, G:0.49, T:0.23
Consensus pattern (22 bp):
TAGAGTGTAGAGGATGGATGGG
Found at i:14492103 original size:22 final size:22
Alignment explanation
Indices: 14492075--14492119 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
14492065 TCCCCACATG
*
14492075 GAGTGTAG-GGTTGGATGGAGTA
1 GAGTGTAGTGGATGGATGG-GTA
14492097 GAGTGTAGTGGATGGATGGGTA
1 GAGTGTAGTGGATGGATGGGTA
14492119 G
1 G
14492120 GACTTTTGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 12 0.57
23 9 0.43
ACGTcount: A:0.22, C:0.00, G:0.51, T:0.27
Consensus pattern (22 bp):
GAGTGTAGTGGATGGATGGGTA
Found at i:14495866 original size:61 final size:60
Alignment explanation
Indices: 14495738--14495868 Score: 156
Period size: 61 Copynumber: 2.1 Consensus size: 60
14495728 TCTATTGTCT
* * * * **
14495738 TATTCAAAAGAACTTCTATTTTATTAAATAGGACAAAATATAAAAATAATTTGTAAAAATA
1 TATTAAAAACAACTTCTATTTTATTAAATA-GAAAAAATATAAAAACAATTCATAAAAATA
* *
14495799 TATTAAAAACAACTTCTATTTTATTAAAT-GAAAACAATATAAAAACAGTTCATACAAATA
1 TATTAAAAACAACTTCTATTTTATTAAATAGAAAA-AATATAAAAACAATTCATAAAAATA
14495859 TATTTAAAAA
1 TA-TTAAAAA
14495869 ATCAATACAT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
59 4 0.07
60 22 0.37
61 34 0.57
ACGTcount: A:0.53, C:0.08, G:0.05, T:0.34
Consensus pattern (60 bp):
TATTAAAAACAACTTCTATTTTATTAAATAGAAAAAATATAAAAACAATTCATAAAAATA
Found at i:14497841 original size:18 final size:20
Alignment explanation
Indices: 14497803--14497857 Score: 60
Period size: 18 Copynumber: 2.8 Consensus size: 20
14497793 AAAAGTTATA
**
14497803 AAATAAATATTAATTAAAATT
1 AAAT-AATATTAAAAAAAATT
*
14497824 ACATAA-A-TAAAAAAAATT
1 AAATAATATTAAAAAAAATT
14497842 AAATAATATTAAAAAA
1 AAATAATATTAAAAAA
14497858 TTGAAATTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
18 14 0.50
19 2 0.07
20 9 0.32
21 3 0.11
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (20 bp):
AAATAATATTAAAAAAAATT
Found at i:14497858 original size:18 final size:18
Alignment explanation
Indices: 14497803--14497864 Score: 54
Period size: 18 Copynumber: 3.2 Consensus size: 18
14497793 AAAAGTTATA
14497803 AAATAAATATTAATTAAAATT
1 AAAT-AATATTAA--AAAATT
* *
14497824 ACATAA-ATAAAAAAAATT
1 AAATAATAT-TAAAAAATT
14497842 AAATAATATTAAAAAATT
1 AAATAATATTAAAAAATT
14497860 GAAAT
1 -AAAT
14497865 TAACCCTTAC
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
18 19 0.56
19 8 0.24
20 4 0.12
21 3 0.09
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (18 bp):
AAATAATATTAAAAAATT
Found at i:14498088 original size:11 final size:12
Alignment explanation
Indices: 14498026--14498089 Score: 55
Period size: 12 Copynumber: 5.7 Consensus size: 12
14498016 AGAGAGCTTT
14498026 GAGAAATTTAGA
1 GAGAAATTTAGA
*
14498038 GGGAAATTT-GA
1 GAGAAATTTAGA
***
14498049 GAGCTTTTTA-A
1 GAGAAATTTAGA
*
14498060 -AAAAATTTAGA
1 GAGAAATTTAGA
14498071 GAGAAATTTAGA
1 GAGAAATTTAGA
14498083 -AGAAATT
1 GAGAAATT
14498090 AAAGGAAATT
Statistics
Matches: 39, Mismatches: 10, Indels: 7
0.70 0.18 0.12
Matches are distributed among these distances:
10 5 0.13
11 16 0.41
12 18 0.46
ACGTcount: A:0.47, C:0.02, G:0.22, T:0.30
Consensus pattern (12 bp):
GAGAAATTTAGA
Found at i:14498351 original size:29 final size:29
Alignment explanation
Indices: 14498297--14498353 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
14498287 CGACTGTTAC
*
14498297 CTATTTCAATAAATAAAATTTAAAATGAT
1 CTATTTCAATAAATAAAATTGAAAATGAT
* * *
14498326 CTATTTCAGTAAATAAAGTTGGAAATGA
1 CTATTTCAATAAATAAAATTGAAAATGA
14498354 GGTTTTTTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.47, C:0.07, G:0.11, T:0.35
Consensus pattern (29 bp):
CTATTTCAATAAATAAAATTGAAAATGAT
Found at i:14505095 original size:69 final size:69
Alignment explanation
Indices: 14504984--14505122 Score: 269
Period size: 69 Copynumber: 2.0 Consensus size: 69
14504974 CAAGACTCTA
*
14504984 TCAGCCCTACCACCACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA
1 TCAGCCCTACCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA
14505049 CCTG
66 CCTG
14505053 TCAGCCCTACCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA
1 TCAGCCCTACCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA
14505118 CCTG
66 CCTG
14505122 T
1 T
14505123 TTTTCCTATC
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.28, C:0.32, G:0.13, T:0.27
Consensus pattern (69 bp):
TCAGCCCTACCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA
CCTG
Found at i:14506381 original size:12 final size:12
Alignment explanation
Indices: 14506366--14506390 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14506356 AACATTATAA
14506366 TGTTAAAATATT
1 TGTTAAAATATT
14506378 TGTTAAAATATT
1 TGTTAAAATATT
14506390 T
1 T
14506391 TTCATTGCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (12 bp):
TGTTAAAATATT
Found at i:14518346 original size:79 final size:79
Alignment explanation
Indices: 14517378--14518313 Score: 1700
Period size: 79 Copynumber: 11.8 Consensus size: 79
14517368 TTGAATGATG
* * * * *
14517378 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT-TCCGGGCTAAG-CCCGAAGGCA
*
14517440 TTTGTGCGAGTTACTAAA
62 TTTGTGTGAGTTACTAAA
14517458 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
14517523 TGTGAGTTACTAAA
66 TGTGAGTTACTAAA
14517537 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
14517602 TGTGAGTTACTAAA
66 TGTGAGTTACTAAA
14517616 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
14517681 TGTGAGTTACTAAA
66 TGTGAGTTACTAAA
14517695 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
14517760 TGTGAGTTACTAAA
66 TGTGAGTTACTAAA
14517774 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
14517839 TGTGAGTTACTAAA
66 TGTGAGTTACTAAA
14517853 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
14517918 TGTGAGTTACTAAA
66 TGTGAGTTACTAAA
14517932 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
14517997 TGTGAGTTACTAAA
66 TGTGAGTTACTAAA
14518011 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
14518076 TGTGAGTTACTAAA
66 TGTGAGTTACTAAA
14518090 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
14518155 TGTGAGTTACTAAA
66 TGTGAGTTACTAAA
14518169 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
14518234 TGTGAGTTACTAAA
66 TGTGAGTTACTAAA
* * * *
14518248 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCAGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT-TCCGGGCTAAG-CCCGAAGGCATT
14518312 TG
64 TG
14518314 AACGAGTAGC
Statistics
Matches: 841, Mismatches: 10, Indels: 10
0.98 0.01 0.01
Matches are distributed among these distances:
78 2 0.00
79 781 0.93
80 46 0.05
81 11 0.01
82 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
TGTGAGTTACTAAA
Found at i:14523038 original size:43 final size:43
Alignment explanation
Indices: 14522945--14523044 Score: 112
Period size: 43 Copynumber: 2.3 Consensus size: 43
14522935 TATTGAGATT
* * * *
14522945 ACATGTAAGACCATGTCTGGGACATTGGCATCGTTAATCGATT
1 ACATGTAAGACCATGTCTAGGACAATGGCATCGATAATCGATA
* * * *
14522988 TCGTGTAAGACCTTGTCTAGGACAATGGCATCGAT-ATGTGATA
1 ACATGTAAGACCATGTCTAGGACAATGGCATCGATAAT-CGATA
14523031 ACATGTAAGACCAT
1 ACATGTAAGACCAT
14523045 ATCTGGGATA
Statistics
Matches: 45, Mismatches: 11, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
42 2 0.04
43 43 0.96
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (43 bp):
ACATGTAAGACCATGTCTAGGACAATGGCATCGATAATCGATA
Found at i:14524393 original size:43 final size:43
Alignment explanation
Indices: 14524346--14524503 Score: 167
Period size: 43 Copynumber: 3.7 Consensus size: 43
14524336 GTTATTGAGA
* *
14524346 TGTGATTACATGTAAGATCATGTCTAGGACATTGACATTATAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGACATTATAT
* * * *
14524389 TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCATTAA
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGACATTA-TAT
* * * * *
14524433 T-TGATTACGTGTAAGACCCTGTTTGGGACAGTGACA-TAGAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGACATTATAT
* *
14524474 GTGTGATAACATGTAAGACCATATCTGGGA
1 -TGTGATTACATGTAAGACCATGTCTGGGA
14524504 TATAGCATTG
Statistics
Matches: 94, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
41 1 0.01
42 2 0.02
43 88 0.94
44 3 0.03
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGACATTATAT
Found at i:14525869 original size:56 final size:56
Alignment explanation
Indices: 14525783--14525902 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
14525773 ACAAGGGATG
14525783 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
14525839 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
14525895 ATGGGCAA
1 ATGGGCAA
14525903 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:14527169 original size:79 final size:81
Alignment explanation
Indices: 14527033--14527215 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
14527023 TCGAATGATG
* *
14527033 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
14527097 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
14527112 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
14527174 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
14527192 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
14527216 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:14527231 original size:40 final size:40
Alignment explanation
Indices: 14527034--14527217 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
14527024 CGAATGATGT
* * * *
14527034 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
14527074 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
14527114 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
14527152 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
14527193 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
14527218 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:14527239 original size:79 final size:79
Alignment explanation
Indices: 14527086--14527250 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
14527076 GGACTAAGAT
* **
14527086 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
14527151 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
14527165 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
14527228 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
14527244 CCGAAGG
1 CCGAAGG
14527251 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:14527407 original size:92 final size:92
Alignment explanation
Indices: 14527250--14527430 Score: 344
Period size: 92 Copynumber: 2.0 Consensus size: 92
14527240 AATTCCGAAG
14527250 GTACGTGATTTGGGAATGAATGATCTTGCTGTAAAAATTTCAGTTAATACGCTTGTAACATCCCA
1 GTACGTGATTTGGGAATGAATGATCTTGCTGTAAAAATTTCAGTTAATACGCTTGTAACATCCCA
14527315 ACATCAAGGTATGTTTCGTATGTGAAT
66 ACATCAAGGTATGTTTCGTATGTGAAT
14527342 GTACGTGATTTGGGAATGAATGATCTTGCTGTAAAAATTTCAGTTAATACGCTTGTAACATCCCA
1 GTACGTGATTTGGGAATGAATGATCTTGCTGTAAAAATTTCAGTTAATACGCTTGTAACATCCCA
**
14527407 ACATTGAGGTATGTTTCGTATGTG
66 ACATCAAGGTATGTTTCGTATGTG
14527431 CTTTGAATTA
Statistics
Matches: 87, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
92 87 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (92 bp):
GTACGTGATTTGGGAATGAATGATCTTGCTGTAAAAATTTCAGTTAATACGCTTGTAACATCCCA
ACATCAAGGTATGTTTCGTATGTGAAT
Found at i:14533943 original size:56 final size:56
Alignment explanation
Indices: 14533857--14533976 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
14533847 ACAAGGGATG
14533857 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
14533913 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
14533969 ATGGGCAA
1 ATGGGCAA
14533977 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:14537547 original size:47 final size:47
Alignment explanation
Indices: 14537435--14537557 Score: 140
Period size: 47 Copynumber: 2.6 Consensus size: 47
14537425 AGGATTCTAT
* * * * * *
14537435 GTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCGAT
1 GTGATGGATGTGAA-AGTGTATATATGTGACAAGGCCGAATGGCCAAC
* * *
14537482 GTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAAC
1 GTGATGGATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAAC
*
14537529 GTGATGGATGTGAAAGTGTATAAATGTGA
1 GTGATGGATGTGAAAGTGTATATATGTGA
14537558 TAAGTCCCGA
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
46 1 0.02
47 63 0.98
ACGTcount: A:0.32, C:0.10, G:0.33, T:0.26
Consensus pattern (47 bp):
GTGATGGATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAAC
Found at i:14537736 original size:37 final size:37
Alignment explanation
Indices: 14537680--14537758 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
14537670 CCGAGCTCTA
* * *
14537680 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
14537717 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
14537754 AAGAC
1 AAGAC
14537759 TTCATAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:14539598 original size:40 final size:40
Alignment explanation
Indices: 14538679--14539584 Score: 1674
Period size: 40 Copynumber: 22.6 Consensus size: 40
14538669 TCGAATGATG
* * * * * *
14538679 TCCGGGCTAAGTCCCAAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
**
14538719 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
14538759 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
14538799 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
14538839 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
14538879 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
14538919 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
14538959 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
14538999 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
14539039 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
14539079 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
14539119 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
14539159 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
14539199 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
14539239 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
14539279 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
14539319 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
14539359 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
14539399 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
14539439 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
14539479 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
14539519 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
14539560 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
14539585 AACGAGGAGC
Statistics
Matches: 852, Mismatches: 10, Indels: 8
0.98 0.01 0.01
Matches are distributed among these distances:
39 1 0.00
40 841 0.99
41 10 0.01
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:14547555 original size:81 final size:81
Alignment explanation
Indices: 14547420--14547581 Score: 297
Period size: 81 Copynumber: 2.0 Consensus size: 81
14547410 TGAAGATCCG
14547420 ATTCATCAAATCCATAAACACCGCAGGGGCATTAGTGAGCCCAAACGGCATCACTAAGAACTCGT
1 ATTCATCAAATCCATAAACACCGCAGGGGCATTAGTGAGCCCAAACGGCATCACTAAGAACTCGT
14547485 AGTGACCGTACCTCGT
66 AGTGACCGTACCTCGT
* * *
14547501 ATTCATCAAATCCATAAATACCGTAGGGGCATTAGTGAGCCCGAACGGCATCACTAAGAACTCGT
1 ATTCATCAAATCCATAAACACCGCAGGGGCATTAGTGAGCCCAAACGGCATCACTAAGAACTCGT
14547566 AGTGACCGTACCTCGT
66 AGTGACCGTACCTCGT
14547582 TCTAAAAGCA
Statistics
Matches: 78, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
81 78 1.00
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.21
Consensus pattern (81 bp):
ATTCATCAAATCCATAAACACCGCAGGGGCATTAGTGAGCCCAAACGGCATCACTAAGAACTCGT
AGTGACCGTACCTCGT
Found at i:14549774 original size:94 final size:94
Alignment explanation
Indices: 14549608--14549795 Score: 358
Period size: 94 Copynumber: 2.0 Consensus size: 94
14549598 ATCCGGGAAT
*
14549608 TGTTGGACAGCCGGATTGGTTCGGGCATATTGTGCGACCCACTCATTCATCATGGTAAAGAAGGC
1 TGTTGGACAGCCGGATTGGTTCGGGCATATTGCGCGACCCACTCATTCATCATGGTAAAGAAGGC
*
14549673 TTTTTTAGCCCCCTCACCTTGATTATTCG
66 TTGTTTAGCCCCCTCACCTTGATTATTCG
14549702 TGTTGGACAGCCGGATTGGTTCGGGCATATTGCGCGACCCACTCATTCATCATGGTAAAGAAGGC
1 TGTTGGACAGCCGGATTGGTTCGGGCATATTGCGCGACCCACTCATTCATCATGGTAAAGAAGGC
14549767 TTGTTTAGCCCCCTCACCTTGATTATTCG
66 TTGTTTAGCCCCCTCACCTTGATTATTCG
14549796 CAGATGACTG
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
94 92 1.00
ACGTcount: A:0.20, C:0.25, G:0.24, T:0.31
Consensus pattern (94 bp):
TGTTGGACAGCCGGATTGGTTCGGGCATATTGCGCGACCCACTCATTCATCATGGTAAAGAAGGC
TTGTTTAGCCCCCTCACCTTGATTATTCG
Found at i:14550219 original size:50 final size:50
Alignment explanation
Indices: 14550144--14550243 Score: 191
Period size: 50 Copynumber: 2.0 Consensus size: 50
14550134 GCATATTAGT
14550144 CGCTTTAAAAATCATATCTTGAGTTATGAAACTTGAAATCCAGTTCCGTA
1 CGCTTTAAAAATCATATCTTGAGTTATGAAACTTGAAATCCAGTTCCGTA
*
14550194 CGCTTTAAAAATCATATCTTGAGTTATGAAACTTGAAATCCAGTTGCGTA
1 CGCTTTAAAAATCATATCTTGAGTTATGAAACTTGAAATCCAGTTCCGTA
14550244 AATTTTCCCT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (50 bp):
CGCTTTAAAAATCATATCTTGAGTTATGAAACTTGAAATCCAGTTCCGTA
Found at i:14550678 original size:181 final size:181
Alignment explanation
Indices: 14550371--14550732 Score: 679
Period size: 181 Copynumber: 2.0 Consensus size: 181
14550361 ACTGACCTTC
14550371 ATGCATTACGATTTGGATAACTCCCTGCACAGAGCTTCAATACTGATGCCGTTTGTTTCTATAGA
1 ATGCATTACGATTTGGATAACTCCCTGCACAGAGCTTCAATACTGATGCCGTTTGTTTCTATAGA
*
14550436 AACTAGACTCAGAGAGGAATCTATACATATATGGCATGACTCCTAATTATCTCTGGTTAATTTAT
66 AACTAGACTCAGAGAGGAATCTATACATATATGGCATGACTCCTAATTATCTCTAGTTAATTTAT
*
14550501 AATTAATTTCAAAAGTCGGAACAGGGAACCCAGAAACCGTTCTGACCCTGT
131 AATGAATTTCAAAAGTCGGAACAGGGAACCCAGAAACCGTTCTGACCCTGT
14550552 ATGCATTACGATTTGGATAACTCCCTGCACAGAGCTTCAATACTGATGCCGTTTGTTTCTATAGA
1 ATGCATTACGATTTGGATAACTCCCTGCACAGAGCTTCAATACTGATGCCGTTTGTTTCTATAGA
14550617 AACTAGACTCAGAGAGGAATCTATACATATATGGCATGACTCCTAATTATCTCTAGTTAATTTAT
66 AACTAGACTCAGAGAGGAATCTATACATATATGGCATGACTCCTAATTATCTCTAGTTAATTTAT
* * *
14550682 AATGAATTTCCAAAGTCGGAATAGGGAACCCAGAAACCGTTCTGGCCCTGT
131 AATGAATTTCAAAAGTCGGAACAGGGAACCCAGAAACCGTTCTGACCCTGT
14550733 CTCACGAGAA
Statistics
Matches: 176, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
181 176 1.00
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.30
Consensus pattern (181 bp):
ATGCATTACGATTTGGATAACTCCCTGCACAGAGCTTCAATACTGATGCCGTTTGTTTCTATAGA
AACTAGACTCAGAGAGGAATCTATACATATATGGCATGACTCCTAATTATCTCTAGTTAATTTAT
AATGAATTTCAAAAGTCGGAACAGGGAACCCAGAAACCGTTCTGACCCTGT
Found at i:14551931 original size:29 final size:29
Alignment explanation
Indices: 14551838--14551913 Score: 152
Period size: 29 Copynumber: 2.6 Consensus size: 29
14551828 TCATCAACCA
14551838 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGTACTTTAAACT
14551867 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGTACTTTAAACT
14551896 CGCACACTTAGTGCCATG
1 CGCACACTTAGTGCCATG
14551914 CATTTCAAGT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 47 1.00
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGTACTTTAAACT
Found at i:14558517 original size:42 final size:43
Alignment explanation
Indices: 14558468--14558570 Score: 131
Period size: 43 Copynumber: 2.4 Consensus size: 43
14558458 TTATTTTTAG
*
14558468 GTAAGACCATGTCTGGGAGA-TCGGCATCG-TATTT-TATTTCAT
1 GTAAGACCATGTCTGGGAGAGT-GGCATCGATATTTGT-TTACAT
* *
14558510 GTAAGACCCTGTCTGGGATAGTGGCATCGATATTTGTTTACAT
1 GTAAGACCATGTCTGGGAGAGTGGCATCGATATTTGTTTACAT
*
14558553 GTAAGACCACGTCTGGGA
1 GTAAGACCATGTCTGGGA
14558571 TGTTGGCATT
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
42 25 0.47
43 27 0.51
44 1 0.02
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.32
Consensus pattern (43 bp):
GTAAGACCATGTCTGGGAGAGTGGCATCGATATTTGTTTACAT
Found at i:14558544 original size:43 final size:42
Alignment explanation
Indices: 14558468--14558584 Score: 125
Period size: 43 Copynumber: 2.8 Consensus size: 42
14558458 TTATTTTTAG
* * *
14558468 GTAAGACCATGTCTGGGAGA-TCGGCATCGTATTT-TATTTCAT
1 GTAAGACCCTGTCTGGGATAGT-GGCATCGTATTTGT-TTACAT
14558510 GTAAGACCCTGTCTGGGATAGTGGCATCGATATTTGTTTACAT
1 GTAAGACCCTGTCTGGGATAGTGGCATCG-TATTTGTTTACAT
*
14558553 GTAAGACCAC-GTCTGGGAT-GTTGGCATTGTAT
1 GTAAGACC-CTGTCTGGGATAG-TGGCATCGTAT
14558585 GAGCTTTCCG
Statistics
Matches: 66, Mismatches: 4, Indels: 10
0.82 0.05 0.12
Matches are distributed among these distances:
42 29 0.44
43 35 0.53
44 2 0.03
ACGTcount: A:0.23, C:0.16, G:0.26, T:0.34
Consensus pattern (42 bp):
GTAAGACCCTGTCTGGGATAGTGGCATCGTATTTGTTTACAT
Found at i:14562105 original size:34 final size:34
Alignment explanation
Indices: 14562056--14562121 Score: 105
Period size: 34 Copynumber: 1.9 Consensus size: 34
14562046 TAATTGCATT
* * *
14562056 ACTGTTACTGTTACTGTTTTGGGCTAAAGCCCAC
1 ACTGCTACTGATACTGTCTTGGGCTAAAGCCCAC
14562090 ACTGCTACTGATACTGTCTTGGGCTAAAGCCC
1 ACTGCTACTGATACTGTCTTGGGCTAAAGCCC
14562122 TAATTGATAC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (34 bp):
ACTGCTACTGATACTGTCTTGGGCTAAAGCCCAC
Found at i:14566711 original size:30 final size:30
Alignment explanation
Indices: 14566677--14566737 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
14566667 TTCCTGAGCC
*
14566677 TAGGGGTAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
14566707 TAGGGGCAAAATTGTAATTTTGTAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
14566737 T
1 T
14566738 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.39, C:0.03, G:0.25, T:0.33
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:14575730 original size:29 final size:29
Alignment explanation
Indices: 14575688--14575747 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
14575678 GGTCATAAAG
*
14575688 AAAACAAACAAAAATTAGAAATTTTCACC
1 AAAACAAAAAAAAATTAGAAATTTTCACC
14575717 AAAACAAAAAAAAATTAGAAATTTTCACC
1 AAAACAAAAAAAAATTAGAAATTTTCACC
14575746 AA
1 AA
14575748 TCCCTAGCAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.62, C:0.15, G:0.03, T:0.20
Consensus pattern (29 bp):
AAAACAAAAAAAAATTAGAAATTTTCACC
Found at i:14579187 original size:27 final size:26
Alignment explanation
Indices: 14579125--14579236 Score: 109
Period size: 27 Copynumber: 4.2 Consensus size: 26
14579115 AGCATGGCTG
* *
14579125 CCAGAACAGATAATGTGACCA-AGTCA
1 CCAGAACAGATAATGTG-GCAGAGCCA
14579151 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
* *
14579179 GCAGAACAGATATATGTGGAAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
14579206 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
14579233 CCAG
1 CCAG
14579237 GACGCTTCCT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 5 0.07
27 55 0.75
28 13 0.18
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:14582257 original size:15 final size:15
Alignment explanation
Indices: 14582237--14582266 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
14582227 GCTGGCATGT
14582237 CAGACATTTCCCTAC
1 CAGACATTTCCCTAC
14582252 CAGACATTTCCCTAC
1 CAGACATTTCCCTAC
14582267 AAACTCCGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.40, G:0.07, T:0.27
Consensus pattern (15 bp):
CAGACATTTCCCTAC
Found at i:14591553 original size:39 final size:40
Alignment explanation
Indices: 14591508--14591679 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
14591498 GCTCCTCGTT
* * *
14591508 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
14591548 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
14591587 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
14591627 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
14591667 CAAATGCCTTCGG
1 CAAATGCCTTCGG
14591680 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:14591608 original size:40 final size:39
Alignment explanation
Indices: 14591510--14591732 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
14591500 TCCTCGTTCA
* * * *
14591510 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
14591549 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
14591588 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
14591628 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
14591668 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
14591709 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
14591733 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:14591692 original size:80 final size:79
Alignment explanation
Indices: 14591508--14591732 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
14591498 GCTCCTCGTT
* * * * *
14591508 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
14591572 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
14591587 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
14591652 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
14591667 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
14591731 GA
63 GA
14591733 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:14591741 original size:41 final size:41
Alignment explanation
Indices: 14591664--14591741 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
14591654 TTTGTATCTC
* * *
14591664 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
14591705 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
14591742 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:14594677 original size:27 final size:27
Alignment explanation
Indices: 14594602--14594713 Score: 102
Period size: 27 Copynumber: 4.1 Consensus size: 27
14594592 AGCATGGCTG
** * *
14594602 CCAGAACAGATA-ATGTAACCGAGTCA
1 CCAGAACAGATATATGTGGCAGAGCCA
14594628 CCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGA-ACAGATATAT-GTGGCAGAGCCA
* *
14594656 CCAGAACAAATATATGTGGCAGAGACA
1 CCAGAACAGATATATGTGGCAGAGCCA
* * * *
14594683 CCATATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCA
14594710 CCAG
1 CCAG
14594714 GACACTTCCT
Statistics
Matches: 70, Mismatches: 13, Indels: 5
0.80 0.15 0.06
Matches are distributed among these distances:
26 5 0.07
27 50 0.71
28 15 0.21
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.18
Consensus pattern (27 bp):
CCAGAACAGATATATGTGGCAGAGCCA
Found at i:14608612 original size:68 final size:69
Alignment explanation
Indices: 14608512--14608698 Score: 218
Period size: 68 Copynumber: 2.6 Consensus size: 69
14608502 AAGCTCTTCC
* *
14608512 TGAGCTGATAAACAATAAGCTCTAATGAGCTGAAACGGTAAGCTCTAATGAACTG-AAATGGTAA
1 TGAGCTG--AAACAGTAAGCTCT-ATGAGCTGAAACGGTAAGCTCTAATGAACTGAAAATAGTAA
*
14608576 GCT-CTA
63 GCTCCAA
* *
14608582 TCGAGCTG-AACAGTAAGCTCATATGAGCTGAAACAGTAAGCTCTAATGAGCTGAAAATAGTAAG
1 T-GAGCTGAAACAGTAAGCTC-TATGAGCTGAAACGGTAAGCTCTAATGAACTGAAAATAGTAAG
14608646 CTCCAA
64 CTCCAA
14608652 TGAGCTGAAAACAGTAAGCTCTTATGAGCTGATATATCGGTAAGCTC
1 TGAGCTG-AAACAGTAAGCTC-TATGAGCTGA-A-A-CGGTAAGCTC
14608699 ATACAATCTG
Statistics
Matches: 101, Mismatches: 7, Indels: 14
0.83 0.06 0.11
Matches are distributed among these distances:
68 40 0.40
69 18 0.18
70 4 0.04
71 28 0.28
72 1 0.01
73 1 0.01
74 9 0.09
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.24
Consensus pattern (69 bp):
TGAGCTGAAACAGTAAGCTCTATGAGCTGAAACGGTAAGCTCTAATGAACTGAAAATAGTAAGCT
CCAA
Found at i:14608648 original size:24 final size:23
Alignment explanation
Indices: 14608512--14608683 Score: 197
Period size: 23 Copynumber: 7.3 Consensus size: 23
14608502 AAGCTCTTCC
*
14608512 TGAGCTGATAAACAATAAGCTCTAA
1 TGAGCTG--AAACAGTAAGCTCTAA
*
14608537 TGAGCTGAAACGGTAAGCTCTAA
1 TGAGCTGAAACAGTAAGCTCTAA
* **
14608560 TGAACTGAAATGGTAAGCTCT-A
1 TGAGCTGAAACAGTAAGCTCTAA
14608582 TCGAGCTG-AACAGTAAGCTC-ATA
1 T-GAGCTGAAACAGTAAGCTCTA-A
14608605 TGAGCTGAAACAGTAAGCTCTAA
1 TGAGCTGAAACAGTAAGCTCTAA
* *
14608628 TGAGCTGAAAATAGTAAGCTCCAA
1 TGAGCTG-AAACAGTAAGCTCTAA
*
14608652 TGAGCTGAAAACAGTAAGCTCTTA
1 TGAGCTG-AAACAGTAAGCTCTAA
14608676 TGAGCTGA
1 TGAGCTGA
14608684 TATATCGGTA
Statistics
Matches: 129, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
22 18 0.14
23 61 0.47
24 43 0.33
25 7 0.05
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (23 bp):
TGAGCTGAAACAGTAAGCTCTAA
Found at i:14611244 original size:43 final size:42
Alignment explanation
Indices: 14611145--14611266 Score: 158
Period size: 43 Copynumber: 2.9 Consensus size: 42
14611135 TTAGGGTTAC
*
14611145 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATA
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCAATA
* * *
14611187 TAAGACTT-TGTGTAAGACCATAGT-TGGGCTATTGGCATCAATA
1 TGAGA-TTACGTGTAAGACCATA-TCTGGGATA-TGGCATCAATA
*
14611230 TGAGATTACATGTAAGACCATATCTGGGATATGGCAT
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCAT
14611267 TGGTACGGTA
Statistics
Matches: 67, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
42 32 0.48
43 35 0.52
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.30
Consensus pattern (42 bp):
TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCAATA
Found at i:14620176 original size:43 final size:42
Alignment explanation
Indices: 14620128--14620293 Score: 158
Period size: 43 Copynumber: 3.9 Consensus size: 42
14620118 TCGAGATGTG
*
14620128 ATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTGAA
1 ATTACATGTAAAACCATGTCTGGGACATTGGCATTGTATTG-A
14620171 ATTACATGTAAAACCATGTCTGGGACATTGGCATTGTTAATTG-
1 ATTACATGTAAAACCATGTCTGGGACATTGGCATTG-T-ATTGA
*** * * * * *
14620214 ATTTTGTGTAAGACCCTGTCCGGGACAGTGGCATCG-ATATGTA
1 ATTACATGTAAAACCATGTCTGGGACATTGGCATTGTAT-TG-A
* * *
14620257 ATAACATGTAAAACCATATCTGGGATA-TGGCATTGTA
1 ATTACATGTAAAACCATGTCTGGGACATTGGCATTGTA
14620294 CGAGCTTATG
Statistics
Matches: 98, Mismatches: 19, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
40 2 0.02
41 2 0.02
42 7 0.07
43 82 0.84
44 1 0.01
45 4 0.04
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (42 bp):
ATTACATGTAAAACCATGTCTGGGACATTGGCATTGTATTGA
Found at i:14620271 original size:86 final size:85
Alignment explanation
Indices: 14620134--14620292 Score: 221
Period size: 86 Copynumber: 1.9 Consensus size: 85
14620124 TGTGATTACA
* * * * *
14620134 TGTAAGACCATGTCTGGGACATTGGCATTGTATTGAAATTACATGTAAAACCATGTCTGGGACAT
1 TGTAAGACCATGTCCGGGACAGTGGCATCGTATTGAAATAACATGTAAAACCATATCTGGGACA-
14620199 TGGCATTGTTAATTGATTTTG
65 TGGCATTGTTAATTGATTTTG
* * *
14620220 TGTAAGACCCTGTCCGGGACAGTGGCATCG-ATATGTAATAACATGTAAAACCATATCTGGGATA
1 TGTAAGACCATGTCCGGGACAGTGGCATCGTAT-TGAAATAACATGTAAAACCATATCTGGGACA
14620284 TGGCATTGT
65 TGGCATTGT
14620293 ACGAGCTTAT
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
85 11 0.17
86 53 0.83
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (85 bp):
TGTAAGACCATGTCCGGGACAGTGGCATCGTATTGAAATAACATGTAAAACCATATCTGGGACAT
GGCATTGTTAATTGATTTTG
Found at i:14624764 original size:58 final size:58
Alignment explanation
Indices: 14624674--14624790 Score: 234
Period size: 58 Copynumber: 2.0 Consensus size: 58
14624664 TTCAAGGACC
14624674 TTGTGTAATTAAACCAAAAGATGGTTTATGAACCTCCTTATTTAGCCAAATTTTGGGT
1 TTGTGTAATTAAACCAAAAGATGGTTTATGAACCTCCTTATTTAGCCAAATTTTGGGT
14624732 TTGTGTAATTAAACCAAAAGATGGTTTATGAACCTCCTTATTTAGCCAAATTTTGGGT
1 TTGTGTAATTAAACCAAAAGATGGTTTATGAACCTCCTTATTTAGCCAAATTTTGGGT
14624790 T
1 T
14624791 GCCTTGGCCC
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 59 1.00
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.38
Consensus pattern (58 bp):
TTGTGTAATTAAACCAAAAGATGGTTTATGAACCTCCTTATTTAGCCAAATTTTGGGT
Found at i:14635383 original size:18 final size:18
Alignment explanation
Indices: 14635335--14635393 Score: 59
Period size: 18 Copynumber: 3.2 Consensus size: 18
14635325 GCTAAGAGAG
*
14635335 TTGAGAGAGGAGAGAATGA
1 TTGAGAGATGAGAG-ATGA
14635354 -TGA-ATGAGTGAGAGATGA
1 TTGAGA-GA-TGAGAGATGA
*
14635372 TTGAGAGATGAGGGATGA
1 TTGAGAGATGAGAGATGA
14635390 TTGA
1 TTGA
14635394 AAAAGTGAGA
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
17 1 0.03
18 22 0.65
19 10 0.29
20 1 0.03
ACGTcount: A:0.37, C:0.00, G:0.41, T:0.22
Consensus pattern (18 bp):
TTGAGAGATGAGAGATGA
Found at i:14637184 original size:11 final size:11
Alignment explanation
Indices: 14637168--14637199 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
14637158 GGTCACCTGA
14637168 AGGCTATAAAT
1 AGGCTATAAAT
14637179 AGGCTATAAAT
1 AGGCTATAAAT
14637190 AGGCTATAAA
1 AGGCTATAAA
14637200 GTTTGATTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.47, C:0.09, G:0.19, T:0.25
Consensus pattern (11 bp):
AGGCTATAAAT
Found at i:14637634 original size:22 final size:19
Alignment explanation
Indices: 14637596--14637635 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 19
14637586 TTATTAAATG
14637596 TAAATAAAACTATGAAAAC
1 TAAATAAAACTATGAAAAC
14637615 TAAACTAAAACATAATGAAAA
1 TAAA-TAAAAC-T-ATGAAAA
14637636 TGCTTGTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.22
20 6 0.33
21 1 0.06
22 7 0.39
ACGTcount: A:0.65, C:0.10, G:0.05, T:0.20
Consensus pattern (19 bp):
TAAATAAAACTATGAAAAC
Found at i:14639443 original size:55 final size:54
Alignment explanation
Indices: 14639359--14639609 Score: 270
Period size: 55 Copynumber: 4.7 Consensus size: 54
14639349 GGGTTTAAGT
*
14639359 ATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGG
1 ATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGGCAAGG
* * *
14639414 ATACCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGCAAAGG
1 ATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGGC-AAGG
* * *
14639470 -TTCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGCAAGG
1 ATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGCAAGG
* *
14639522 ATACCATGTAAGACCATGTCGAGACATGGCAA-TGGTAAGTTTC-AA---AAGG
1 ATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGCAAGG
** * *
14639571 ATACCACATAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 ATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
14639610 GTACCCGTGT
Statistics
Matches: 169, Mismatches: 20, Indels: 20
0.81 0.10 0.10
Matches are distributed among these distances:
49 38 0.22
52 7 0.04
53 40 0.24
54 12 0.07
55 68 0.40
56 4 0.02
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (54 bp):
ATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGCAAGG
Found at i:14639561 original size:108 final size:110
Alignment explanation
Indices: 14639362--14639562 Score: 336
Period size: 108 Copynumber: 1.8 Consensus size: 110
14639352 TTTAAGTATA
14639362 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
*
14639427 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTT
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTT
*
14639472 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
* *
14639534 ACCATGTCGAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
14639563 TCAAAAGGAT
Statistics
Matches: 86, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
107 3 0.03
108 49 0.57
109 7 0.08
110 27 0.31
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTT
Found at i:14649126 original size:16 final size:16
Alignment explanation
Indices: 14649105--14649135 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14649095 ATAAATTTGA
14649105 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
14649121 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
14649136 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:14650322 original size:210 final size:210
Alignment explanation
Indices: 14649960--14650380 Score: 842
Period size: 210 Copynumber: 2.0 Consensus size: 210
14649950 AACAGGGAAA
14649960 AGTTTAACTAATAAACAGTACTAATTAGACAGACCAAAGATTCTAAAACAAATTTATTAAGAAGG
1 AGTTTAACTAATAAACAGTACTAATTAGACAGACCAAAGATTCTAAAACAAATTTATTAAGAAGG
14650025 TATATGAGTCAGTTTTAGAGAAAATTCACGGATTTGAATGTTGTGTTTTGTAACTCGAGTTATGA
66 TATATGAGTCAGTTTTAGAGAAAATTCACGGATTTGAATGTTGTGTTTTGTAACTCGAGTTATGA
14650090 TTTATTTAGTGACTATGACGTAGATGGACAGTTTATTTATGAAAGATGAAATAAATTGTTTTGAT
131 TTTATTTAGTGACTATGACGTAGATGGACAGTTTATTTATGAAAGATGAAATAAATTGTTTTGAT
14650155 TTGTTTAAGTGATCG
196 TTGTTTAAGTGATCG
14650170 AGTTTAACTAATAAACAGTACTAATTAGACAGACCAAAGATTCTAAAACAAATTTATTAAGAAGG
1 AGTTTAACTAATAAACAGTACTAATTAGACAGACCAAAGATTCTAAAACAAATTTATTAAGAAGG
14650235 TATATGAGTCAGTTTTAGAGAAAATTCACGGATTTGAATGTTGTGTTTTGTAACTCGAGTTATGA
66 TATATGAGTCAGTTTTAGAGAAAATTCACGGATTTGAATGTTGTGTTTTGTAACTCGAGTTATGA
14650300 TTTATTTAGTGACTATGACGTAGATGGACAGTTTATTTATGAAAGATGAAATAAATTGTTTTGAT
131 TTTATTTAGTGACTATGACGTAGATGGACAGTTTATTTATGAAAGATGAAATAAATTGTTTTGAT
14650365 TTGTTTAAGTGATCG
196 TTGTTTAAGTGATCG
14650380 A
1 A
14650381 AATTTTTTTA
Statistics
Matches: 211, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
210 211 1.00
ACGTcount: A:0.36, C:0.08, G:0.19, T:0.37
Consensus pattern (210 bp):
AGTTTAACTAATAAACAGTACTAATTAGACAGACCAAAGATTCTAAAACAAATTTATTAAGAAGG
TATATGAGTCAGTTTTAGAGAAAATTCACGGATTTGAATGTTGTGTTTTGTAACTCGAGTTATGA
TTTATTTAGTGACTATGACGTAGATGGACAGTTTATTTATGAAAGATGAAATAAATTGTTTTGAT
TTGTTTAAGTGATCG
Found at i:14655290 original size:30 final size:30
Alignment explanation
Indices: 14655254--14655314 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
14655244 TCCTTAACTC
14655254 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
14655284 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
14655314 A
1 A
14655315 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:14660151 original size:55 final size:53
Alignment explanation
Indices: 14660069--14660268 Score: 205
Period size: 53 Copynumber: 3.8 Consensus size: 53
14660059 ATTAGGGTTT
*
14660069 AAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGGTAAGTT-C-ATAAGGC
* * *
14660124 AAAGG-TCCCATGTAAGACCATGGCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGGTAAGTTCATAAGGC
* * * *
14660177 AAGGATACTATGTAAGACCATGTCGAGACATGGCAATGGTAAGTT--TCAA---
1 AAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGGTAAGTTCAT-AAGGC
* ** * *
14660226 AAGGATACCACGTAAGACCATCACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGGTAAG
14660269 GTACCCGTGT
Statistics
Matches: 125, Mismatches: 17, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
49 37 0.30
51 1 0.01
52 6 0.05
53 40 0.32
54 1 0.01
55 36 0.29
56 4 0.03
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGGTAAGTTCATAAGGC
Found at i:14660197 original size:53 final size:56
Alignment explanation
Indices: 14660069--14660221 Score: 206
Period size: 53 Copynumber: 2.8 Consensus size: 56
14660059 ATTAGGGTTT
*
14660069 AAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGATAAGTTACTATAAGGCA
1 AAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGGTAAGTTACTATAAGGCA
* * *
14660125 AAGG-TCCCATGTAAGACCATGGCAAGGCATGGCATTGGTGAGTT-C-ATAAGGC-
1 AAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGGTAAGTTACTATAAGGCA
* * * *
14660177 AAGGATACTATGTAAGACCATGTCGAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGGTAAGTT
14660222 TCAAAAGGAT
Statistics
Matches: 85, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
52 4 0.05
53 40 0.47
54 1 0.01
55 36 0.42
56 4 0.05
ACGTcount: A:0.34, C:0.16, G:0.27, T:0.23
Consensus pattern (56 bp):
AAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGGTAAGTTACTATAAGGCA
Found at i:14671591 original size:40 final size:40
Alignment explanation
Indices: 14671491--14671662 Score: 197
Period size: 40 Copynumber: 4.3 Consensus size: 40
14671481 GCTCCTCGTT
* * *
14671491 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
14671531 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * * *
14671570 CGAATGCCTTCGGGACTTAACCCGGATTTCGTATCTCCCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
14671610 CAAAGGCCTTCGAGG-CTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCG-GGACATAACCCGG-ATTTAGTAACTCGCA
14671650 CAAATGCCTTCGG
1 CAAATGCCTTCGG
14671663 ATCTTAGTCC
Statistics
Matches: 116, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
39 36 0.31
40 74 0.64
41 6 0.05
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:14671675 original size:80 final size:79
Alignment explanation
Indices: 14671491--14671705 Score: 211
Period size: 80 Copynumber: 2.7 Consensus size: 79
14671481 GCTCCTCGTT
* * *
14671491 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGA
14671556 TTTAATAACTCGCA
66 TTTAATAACTCGCA
* * * * * *
14671570 CGAATGCCTTCGGGACTTAACCCGGATTTCGTATCTCCCACAAAGGCCTTCGAGG-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCG-GGACATAACCCG
* *
14671634 GAATTT-GTATCTCGCA
64 G-ATTTAATAACTCGCA
* * * * * *
14671650 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGAC
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCA-CACAAGGCCTTCGGGAC
14671706 TTAGGCCGGA
Statistics
Matches: 108, Mismatches: 22, Indels: 11
0.77 0.16 0.08
Matches are distributed among these distances:
79 39 0.36
80 60 0.56
81 9 0.08
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGA
TTTAATAACTCGCA
Found at i:14671724 original size:41 final size:41
Alignment explanation
Indices: 14671647--14671724 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
14671637 TTTGTATCTC
* * *
14671647 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGGCCGGACACATTCACTTA
14671688 GCACAAA-GCCTTCGGGA-CTTAGGCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGGCCGGACA-CATTCA
14671725 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGGCCGGACACATTCACTTA
Found at i:14683084 original size:54 final size:54
Alignment explanation
Indices: 14682944--14683253 Score: 185
Period size: 56 Copynumber: 5.6 Consensus size: 54
14682934 AATTGATGAC
* * * * * * **
14682944 ATGATACATGCTAGGTTCGGGAGCTTGTGTAGCCCCGTTGAGGGGTATGTAATTAT
1 ATGATACATGCTAGGTCCAGGAGCTTATGTAGCCCCATTGAGAGG--CGTGGTTAT
* ** * * *
14683000 GTGGCACACGCTAGGT-CAGGAGCTTATGTAGCCCTATTGAGAGGCGCGGTTAT
1 ATGATACATGCTAGGTCCAGGAGCTTATGTAGCCCCATTGAGAGGCGTGGTTAT
* * *
14683053 ATGATACATGCTAGGTCCAGGAGCTTGTGTAGCCCCATTGAGAGGCAT-GTAATT
1 ATGATACATGCTAGGTCCAGGAGCTTATGTAGCCCCATTGAGAGGCGTGGTTA-T
* * * * * **
14683107 ATGTCGTACATGCTAGGTCCGGGAGCTTGTGTAACCCCGTTGAGAGGCAAGTAATTAT
1 ATG--ATACATGCTAGGTCCAGGAGCTTATGTAGCCCCATTGAGAGGC--GTGGTTAT
* * * ** * ** *
14683165 GTGGTACACGCTAGGTCTGGGAGCTTATATAGCCCTGTTAAGAGGCGTGGTTAT
1 ATGATACATGCTAGGTCCAGGAGCTTATGTAGCCCCATTGAGAGGCGTGGTTAT
* * **
14683219 GT-ATGCATGCTAGGTCCGAGTGCTCTTATGTAGCC
1 ATGATACATGCTAGGTCC-AG-GAGCTTATGTAGCC
14683254 TTATTTTGAG
Statistics
Matches: 198, Mismatches: 47, Indels: 19
0.75 0.18 0.07
Matches are distributed among these distances:
53 31 0.16
54 40 0.20
55 34 0.17
56 87 0.44
58 4 0.02
59 2 0.01
ACGTcount: A:0.22, C:0.18, G:0.31, T:0.29
Consensus pattern (54 bp):
ATGATACATGCTAGGTCCAGGAGCTTATGTAGCCCCATTGAGAGGCGTGGTTAT
Found at i:14683209 original size:56 final size:56
Alignment explanation
Indices: 14682948--14683210 Score: 280
Period size: 56 Copynumber: 4.8 Consensus size: 56
14682938 GATGACATGA
* * *
14682948 TACATGCTAGGTTCGGGAGCTTGTGTAGCCCCGTTGAGGGGTATGTAATTATGTGG
1 TACATGCTAGGTCCGGGAGCTTGTGTAGCCCCGTTGAGAGGCATGTAATTATGTGG
* * * * ** *** * *
14683004 CACACGCTAGGT-CAGGAGCTTATGTAGCCCTATTGAGAGGC--GCGGTTATATGA
1 TACATGCTAGGTCCGGGAGCTTGTGTAGCCCCGTTGAGAGGCATGTAATTATGTGG
* * *
14683057 TACATGCTAGGTCCAGGAGCTTGTGTAGCCCCATTGAGAGGCATGTAATTATGTCG
1 TACATGCTAGGTCCGGGAGCTTGTGTAGCCCCGTTGAGAGGCATGTAATTATGTGG
* *
14683113 TACATGCTAGGTCCGGGAGCTTGTGTAACCCCGTTGAGAGGCAAGTAATTATGTGG
1 TACATGCTAGGTCCGGGAGCTTGTGTAGCCCCGTTGAGAGGCATGTAATTATGTGG
* * * * * *
14683169 TACACGCTAGGTCTGGGAGCTTATATAGCCCTGTTAAGAGGC
1 TACATGCTAGGTCCGGGAGCTTGTGTAGCCCCGTTGAGAGGC
14683211 GTGGTTATGT
Statistics
Matches: 169, Mismatches: 35, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
53 17 0.10
54 27 0.16
55 23 0.14
56 102 0.60
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.28
Consensus pattern (56 bp):
TACATGCTAGGTCCGGGAGCTTGTGTAGCCCCGTTGAGAGGCATGTAATTATGTGG
Found at i:14687599 original size:28 final size:28
Alignment explanation
Indices: 14687567--14687693 Score: 164
Period size: 28 Copynumber: 4.5 Consensus size: 28
14687557 TAGTAAGTCT
*
14687567 GCACACTTAGTGTTATATAATCAAACTC
1 GCACACTTAGTGCTATATAATCAAACTC
* *
14687595 GCACACTTAGTGCTTACATAATCAAACTT
1 GCACACTTAGTGC-TATATAATCAAACTC
*
14687624 GCACACTTAGTGCTATATAATCAAACTT
1 GCACACTTAGTGCTATATAATCAAACTC
** * *
14687652 GCACACTTAGTGCTATGCAATTTAAACCC
1 GCACACTTAGTGCTATATAA-TCAAACTC
14687681 GCACACTTAGTGC
1 GCACACTTAGTGC
14687694 CAATCTCATG
Statistics
Matches: 88, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 44 0.50
29 44 0.50
ACGTcount: A:0.33, C:0.24, G:0.13, T:0.30
Consensus pattern (28 bp):
GCACACTTAGTGCTATATAATCAAACTC
Found at i:14687627 original size:29 final size:29
Alignment explanation
Indices: 14687566--14687665 Score: 168
Period size: 28 Copynumber: 3.5 Consensus size: 29
14687556 ATAGTAAGTC
14687566 TGCACACTTAGTG-TTATATAATCAAACT
1 TGCACACTTAGTGCTTATATAATCAAACT
* *
14687594 CGCACACTTAGTGCTTACATAATCAAACT
1 TGCACACTTAGTGCTTATATAATCAAACT
14687623 TGCACACTTAGTGC-TATATAATCAAACT
1 TGCACACTTAGTGCTTATATAATCAAACT
14687651 TGCACACTTAGTGCT
1 TGCACACTTAGTGCT
14687666 ATGCAATTTA
Statistics
Matches: 66, Mismatches: 4, Indels: 3
0.90 0.05 0.04
Matches are distributed among these distances:
28 39 0.59
29 27 0.41
ACGTcount: A:0.33, C:0.23, G:0.12, T:0.32
Consensus pattern (29 bp):
TGCACACTTAGTGCTTATATAATCAAACT
Found at i:14687685 original size:57 final size:57
Alignment explanation
Indices: 14687567--14687693 Score: 175
Period size: 57 Copynumber: 2.2 Consensus size: 57
14687557 TAGTAAGTCT
* **
14687567 GCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACTT
1 GCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACCC
* * * *
14687624 GCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCA-ATTTAAACCC
1 GCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAACCC
14687681 GCACACTTAGTGC
1 GCACACTTAGTGC
14687694 CAATCTCATG
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
57 59 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.24, G:0.13, T:0.30
Consensus pattern (57 bp):
GCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACCC
Found at i:14692408 original size:28 final size:27
Alignment explanation
Indices: 14692368--14692481 Score: 99
Period size: 27 Copynumber: 4.2 Consensus size: 27
14692358 GGAGGAAGCA
14692368 TTCTGGTGGCTATGCCACAAATATCTGT
1 TTCTGGTGGCTATGCCAC-AATATCTGT
* *
14692396 TTCTGGTGGCTATTG-GACGAATATCT-A
1 TTCTGGTGGCTA-TGCCAC-AATATCTGT
*
14692423 TTCTGGTGGCTCTGCCACAATATCTGT
1 TTCTGGTGGCTATGCCACAATATCTGT
* * * * * *
14692450 ATGTGATGACTCTGTCACAATATCTG-
1 TTCTGGTGGCTATGCCACAATATCTGT
14692476 TTCTGG
1 TTCTGG
14692482 CAGCCATGCT
Statistics
Matches: 69, Mismatches: 14, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
26 12 0.17
27 34 0.49
28 21 0.30
29 2 0.03
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.37
Consensus pattern (27 bp):
TTCTGGTGGCTATGCCACAATATCTGT
Found at i:14696721 original size:27 final size:27
Alignment explanation
Indices: 14696691--14696752 Score: 74
Period size: 26 Copynumber: 2.3 Consensus size: 27
14696681 ATTTACTAAA
*
14696691 ATACCCCTAAGTATG-AAAATTACCATT
1 ATACCCCTAAG-ATGCAAAATGACCATT
*
14696718 ATACCCCT-AGGTGCAAAATGACCATT
1 ATACCCCTAAGATGCAAAATGACCATT
*
14696744 ATTCCCCTA
1 ATACCCCTA
14696753 GGGTTAATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 2 0.07
26 20 0.67
27 8 0.27
ACGTcount: A:0.35, C:0.27, G:0.10, T:0.27
Consensus pattern (27 bp):
ATACCCCTAAGATGCAAAATGACCATT
Found at i:14696927 original size:27 final size:25
Alignment explanation
Indices: 14696857--14696969 Score: 109
Period size: 27 Copynumber: 4.2 Consensus size: 25
14696847 AGAGGAAGCA
14696857 TTCTGCTGGCTATGCCACAAATATCTG
1 TTCTG-TGGCTATGCCAC-AATATCTG
14696884 TTTCTGGTGGCTATGCCACGAATATCTG
1 -TTCT-GTGGCTATGCCAC-AATATCTG
*
14696912 TTCTAGTGGCTCTGCCACAATATCTG
1 TTCT-GTGGCTATGCCACAATATCTG
* * * *
14696938 TACCTGATGACTCTGTCACAATATCTG
1 T-TCTG-TGGCTATGCCACAATATCTG
14696965 TTCTG
1 TTCTG
14696970 GCAACCACAC
Statistics
Matches: 75, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
26 13 0.17
27 37 0.49
28 24 0.32
29 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.19, T:0.35
Consensus pattern (25 bp):
TTCTGTGGCTATGCCACAATATCTG
Found at i:14704789 original size:45 final size:45
Alignment explanation
Indices: 14704739--14704829 Score: 173
Period size: 45 Copynumber: 2.0 Consensus size: 45
14704729 ATCTGAAAAG
14704739 TAAGCATGTAGTACATCGAGTCTCCGGTGTCGATCCTGTAAGCAC
1 TAAGCATGTAGTACATCGAGTCTCCGGTGTCGATCCTGTAAGCAC
*
14704784 TAAGCATGTAGTACATCGAGTCTCTGGTGTCGATCCTGTAAGCAC
1 TAAGCATGTAGTACATCGAGTCTCCGGTGTCGATCCTGTAAGCAC
14704829 T
1 T
14704830 TTTAAACTTA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (45 bp):
TAAGCATGTAGTACATCGAGTCTCCGGTGTCGATCCTGTAAGCAC
Found at i:14713086 original size:48 final size:48
Alignment explanation
Indices: 14713032--14713127 Score: 174
Period size: 48 Copynumber: 2.0 Consensus size: 48
14713022 GGGGGAGGAG
*
14713032 AACTAGGGTTTCTTTCGGGATTTGAGGTTGACGGCATAAGAGAAAAGT
1 AACTAGGGTTTCTTTCGGGATTTGAGGTTGACGACATAAGAGAAAAGT
*
14713080 AACTAGGGTTTCTTTTGGGATTTGAGGTTGACGACATAAGAGAAAAGT
1 AACTAGGGTTTCTTTCGGGATTTGAGGTTGACGACATAAGAGAAAAGT
14713128 TTAAGTATTT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.30, C:0.09, G:0.30, T:0.30
Consensus pattern (48 bp):
AACTAGGGTTTCTTTCGGGATTTGAGGTTGACGACATAAGAGAAAAGT
Found at i:14717897 original size:36 final size:35
Alignment explanation
Indices: 14717857--14717925 Score: 120
Period size: 36 Copynumber: 1.9 Consensus size: 35
14717847 AGTTGGACTA
*
14717857 GGGTCCTTGTCCACTCCTATTTTGATGTTGGTTNTG
1 GGGTCCTTATCCACTCCTATTTTGATGTTGGTT-TG
14717893 GGGTCCTTATCCACTCCTATTTTGATGTTGGTT
1 GGGTCCTTATCCACTCCTATTTTGATGTTGGTT
14717926 CCCTACACAG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.10, C:0.20, G:0.23, T:0.45
Consensus pattern (35 bp):
GGGTCCTTATCCACTCCTATTTTGATGTTGGTTTG
Found at i:14726465 original size:17 final size:16
Alignment explanation
Indices: 14726435--14726468 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
14726425 TATTTTGAGA
*
14726435 TATTATTAATAGGAAT
1 TATTATTAAGAGGAAT
14726451 TATTAGTTAAGAGGAAT
1 TATTA-TTAAGAGGAAT
14726468 T
1 T
14726469 TATTTTGATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.41, C:0.00, G:0.18, T:0.41
Consensus pattern (16 bp):
TATTATTAAGAGGAAT
Found at i:14731881 original size:30 final size:30
Alignment explanation
Indices: 14731847--14731907 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
14731837 TCCTTAACTC
14731847 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
14731877 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
14731907 A
1 A
14731908 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:14738564 original size:20 final size:22
Alignment explanation
Indices: 14738539--14738578 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
14738529 TTATTGAATG
14738539 TAAATAAAAC-T-ATGAAAACT
1 TAAATAAAACATAATGAAAACT
14738559 TAAATAAAACATAATGAAAA
1 TAAATAAAACATAATGAAAA
14738579 TGCTTGTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 10 0.56
21 1 0.06
22 7 0.39
ACGTcount: A:0.65, C:0.07, G:0.05, T:0.23
Consensus pattern (22 bp):
TAAATAAAACATAATGAAAACT
Found at i:14740366 original size:20 final size:20
Alignment explanation
Indices: 14740317--14740369 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
14740307 TGGGAGGTGT
*
14740317 ATATCATGATACCCAAGGGG
1 ATATCACGATACCCAAGGGG
**
14740337 ATATTGCGATACCCAAGGGG
1 ATATCACGATACCCAAGGGG
14740357 ATATCACGATACC
1 ATATCACGATACC
14740370 GCTAATGGTA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.21
Consensus pattern (20 bp):
ATATCACGATACCCAAGGGG
Found at i:14760132 original size:25 final size:25
Alignment explanation
Indices: 14760084--14760134 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
14760074 CCCTTATAAT
* * *
14760084 GTGAAAATGACCTTTTTGCCCCTAG
1 GTGAAAATGACCATTATACCCCTAG
*
14760109 GTGAAAATGACCATTATACTCCTAG
1 GTGAAAATGACCATTATACCCCTAG
14760134 G
1 G
14760135 GTTATGTTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (25 bp):
GTGAAAATGACCATTATACCCCTAG
Found at i:14760191 original size:10 final size:10
Alignment explanation
Indices: 14760176--14760214 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
14760166 TGCTTTTGTA
14760176 CATGATATGC
1 CATGATATGC
14760186 CATGATATGC
1 CATGATATGC
14760196 ACATGATATGC
1 -CATGATATGC
14760207 CATGATAT
1 CATGATAT
14760215 ATTCACATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (10 bp):
CATGATATGC
Found at i:14760199 original size:21 final size:21
Alignment explanation
Indices: 14760175--14760214 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
14760165 ATGCTTTTGT
14760175 ACATGATATGCCATGATATGC
1 ACATGATATGCCATGATATGC
14760196 ACATGATATGCCATGATAT
1 ACATGATATGCCATGATAT
14760215 ATTCACATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.30
Consensus pattern (21 bp):
ACATGATATGCCATGATATGC
Found at i:14767969 original size:25 final size:25
Alignment explanation
Indices: 14767921--14767971 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
14767911 CCCTTATAAT
* * *
14767921 GTGAAAATGACCTTTTTGCCCCTAG
1 GTGAAAATGACCATTATACCCCTAG
*
14767946 GTGAAAATGACCATTATACTCCTAG
1 GTGAAAATGACCATTATACCCCTAG
14767971 G
1 G
14767972 GTTATGTTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (25 bp):
GTGAAAATGACCATTATACCCCTAG
Found at i:14768028 original size:10 final size:10
Alignment explanation
Indices: 14768013--14768051 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
14768003 TGCTTTTGTA
14768013 CATGATATGC
1 CATGATATGC
14768023 CATGATATGC
1 CATGATATGC
14768033 ACATGATATGC
1 -CATGATATGC
14768044 CATGATAT
1 CATGATAT
14768052 ATTCACATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (10 bp):
CATGATATGC
Found at i:14768036 original size:21 final size:21
Alignment explanation
Indices: 14768012--14768051 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
14768002 ATGCTTTTGT
14768012 ACATGATATGCCATGATATGC
1 ACATGATATGCCATGATATGC
14768033 ACATGATATGCCATGATAT
1 ACATGATATGCCATGATAT
14768052 ATTCACATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.30
Consensus pattern (21 bp):
ACATGATATGCCATGATATGC
Found at i:14775635 original size:46 final size:46
Alignment explanation
Indices: 14775510--14775635 Score: 207
Period size: 46 Copynumber: 2.7 Consensus size: 46
14775500 TGTAACCCGC
* * * *
14775510 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
14775556 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
*
14775602 CCATAAGTGAACTCGGACTCAACTCAACAAGTTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
14775636 GGATGCCCAA
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 75 1.00
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
Found at i:14779285 original size:101 final size:101
Alignment explanation
Indices: 14779110--14779320 Score: 422
Period size: 101 Copynumber: 2.1 Consensus size: 101
14779100 AAAAACATAG
14779110 CCCTTAAAGGGGGTTTGAAAGCTTAAAATTTTTAGCAACTTGAAACACTCACAAGTAAGTGATTT
1 CCCTTAAAGGGGGTTTGAAAGCTTAAAATTTTTAGCAACTTGAAACACTCACAAGTAAGTGATTT
14779175 CCATGTCCTTTGTTGATGATTTTTGTACTTTTGAGA
66 CCATGTCCTTTGTTGATGATTTTTGTACTTTTGAGA
14779211 CCCTTAAAGGGGGTTTGAAAGCTTAAAATTTTTAGCAACTTGAAACACTCACAAGTAAGTGATTT
1 CCCTTAAAGGGGGTTTGAAAGCTTAAAATTTTTAGCAACTTGAAACACTCACAAGTAAGTGATTT
14779276 CCATGTCCTTTGTTGATGATTTTTGTACTTTTGAGA
66 CCATGTCCTTTGTTGATGATTTTTGTACTTTTGAGA
14779312 CCCTTAAAG
1 CCCTTAAAG
14779321 CATGAGCTTT
Statistics
Matches: 110, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
101 110 1.00
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (101 bp):
CCCTTAAAGGGGGTTTGAAAGCTTAAAATTTTTAGCAACTTGAAACACTCACAAGTAAGTGATTT
CCATGTCCTTTGTTGATGATTTTTGTACTTTTGAGA
Found at i:14780144 original size:46 final size:46
Alignment explanation
Indices: 14779978--14780199 Score: 169
Period size: 46 Copynumber: 4.7 Consensus size: 46
14779968 GAGTTACTGT
* * * * * * *
14779978 GAGCTAGTGCAAGACATGTCTGAGACGTGCATCGGCCACAATATGA
1 GAGCAAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGA
* ** * *
14780024 GAGCAAGTGTAAGACCATGTCTGGGACATGGCATTGGTATTGAGACGA
1 GAGCAAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGA
* * * *
14780072 GTGCTAGTGTAAGATATGTCTAGGACATGCATCGGCCTCGAGATGTA
1 GAGCAAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-A
* * * *
14780119 -AGCCAGTATAAGACATGTCTGGGACATGCATCGG-CTATGAGGTGA
1 GAGCAAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGA
* **
14780164 TAGTTAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GAGCAAGTGTAAGA-CATGTCTGGGACAT-GCATCG
14780200 ACTCCTTACA
Statistics
Matches: 138, Mismatches: 31, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
45 3 0.02
46 68 0.49
47 39 0.28
48 28 0.20
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.24
Consensus pattern (46 bp):
GAGCAAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGA
Found at i:14786104 original size:52 final size:51
Alignment explanation
Indices: 14786040--14786142 Score: 127
Period size: 51 Copynumber: 2.0 Consensus size: 51
14786030 TCAGCAAGGT
* *
14786040 ATTTCGCCCGCAAACCA-ACGGTCAGATGGAAAGAGGGGTTCAGATTTTAAAA
1 ATTTCACCCGCAAA-CAGACGGTCAG-TCGAAAGAGGGGTTCAGATTTTAAAA
* * * *
14786092 ATTTCACCCGCAAATAGACTGTTAGTCGAAAGAGTGGTTCAGATTTTAAAA
1 ATTTCACCCGCAAACAGACGGTCAGTCGAAAGAGGGGTTCAGATTTTAAAA
14786143 GACATGTTGC
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
51 25 0.57
52 19 0.43
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.25
Consensus pattern (51 bp):
ATTTCACCCGCAAACAGACGGTCAGTCGAAAGAGGGGTTCAGATTTTAAAA
Found at i:14796428 original size:46 final size:46
Alignment explanation
Indices: 14796375--14796497 Score: 160
Period size: 46 Copynumber: 2.6 Consensus size: 46
14796365 ATTGTTGACT
*
14796375 AGTGTAAGATATGTCTGGGACATGCATCGGCCT-CGAGACG-TAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGACGAT-AGCC
* * *
14796421 AGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGACGATAGCC
14796467 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG
14796498 ACTTGAGATG
Statistics
Matches: 69, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
45 2 0.03
46 46 0.67
47 15 0.22
48 6 0.09
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGACGATAGCC
Found at i:14796505 original size:47 final size:45
Alignment explanation
Indices: 14796375--14796538 Score: 177
Period size: 47 Copynumber: 3.5 Consensus size: 45
14796365 ATTGTTGACT
* * * * *
14796375 AGTGTAAGATATGTCTGGGACATGCATCGGCCTCGAGACG-TAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GACTTGAGATGAT-AGTC
*
14796421 AGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGACT-TGAGATGATAGTC
*
14796467 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATGAGAGTC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGACTTGAGATGATAGTC
* * *
14796514 AGTGTAACACCATGTGTAGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
14796539 GTGTCGGCAC
Statistics
Matches: 104, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
45 3 0.03
46 45 0.43
47 48 0.46
48 8 0.08
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACTTGAGATGATAGTC
Found at i:14801120 original size:46 final size:47
Alignment explanation
Indices: 14801067--14801237 Score: 217
Period size: 47 Copynumber: 3.7 Consensus size: 47
14801057 ATTGTCGGCT
*
14801067 AGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCTCGAGACGTAAGCC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGG-CTCGAGATGTAAGCC
* *
14801113 AGTGTAAGA-CATGTCTAGGACAT-GCATCGGCTACGAGTTG-ATAGTC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCT-CGAGATGTA-AGCC
* ** *
14801159 AGTGTAAGACCATGTCTAGGACATGGCATCGACTTAAGATGTGAGCC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCTCGAGATGTAAGCC
14801206 AGTGTAAGACCATGTCTAGGACATGGCATCGG
1 AGTGTAAGACCATGTCTAGGACATGGCATCGG
14801238 TACTTTACCC
Statistics
Matches: 110, Mismatches: 10, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
45 3 0.03
46 47 0.43
47 52 0.47
48 8 0.07
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTAGGACATGGCATCGGCTCGAGATGTAAGCC
Found at i:14805657 original size:34 final size:34
Alignment explanation
Indices: 14805614--14805681 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
14805604 AAAATGTGGG
*
14805614 TCCTAAATCTCAGAATACTTCTGCAGCCAGTGTA
1 TCCTAAATCTCAGAATACTTCTGCAGCCAATGTA
14805648 TCCTAAATCTCAGAATACTTCTGCAGCCAATGTA
1 TCCTAAATCTCAGAATACTTCTGCAGCCAATGTA
14805682 GGGAACTCGA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.29
Consensus pattern (34 bp):
TCCTAAATCTCAGAATACTTCTGCAGCCAATGTA
Found at i:14810253 original size:46 final size:46
Alignment explanation
Indices: 14810203--14810378 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
14810193 TGGTTGAGCA
*
14810203 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
14810249 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GAT-CTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
14810294 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
14810342 CCCGAGCTCGTTGATTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
14810379 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 3 0.03
46 61 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:14810361 original size:93 final size:93
Alignment explanation
Indices: 14810200--14810371 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
14810190 GGATGGTTGA
*
14810200 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
14810265 TGAGTCCGAGTTCGTGAGATCTAACTAG
66 TGAGTCCGAGTTCGTGAGATCTAACTAG
* * *
14810293 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGATT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
14810358 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
14810372 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATCTAACTAG
Found at i:14813944 original size:55 final size:54
Alignment explanation
Indices: 14813854--14813958 Score: 140
Period size: 55 Copynumber: 1.9 Consensus size: 54
14813844 GCCAAAACAA
* *
14813854 CACGGGCGTTCGACACGCTCGTGCCTCGAAACTGTGGGTGAACCTGTCAAACTAG
1 CACGGGCATGCGACACGCTCGTGCCTC-AAACTGTGGGTGAACCTGTCAAACTAG
* *
14813909 CACGGGCATGCGACACGCTCGTGCC-CATCATCTGTGGGTGAATCTGTCAA
1 CACGGGCATGCGACACGCTCGTGCCTCA--AACTGTGGGTGAACCTGTCAA
14813959 GTTAACACGG
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
53 1 0.02
54 1 0.02
55 42 0.95
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.21
Consensus pattern (54 bp):
CACGGGCATGCGACACGCTCGTGCCTCAAACTGTGGGTGAACCTGTCAAACTAG
Found at i:14813968 original size:55 final size:54
Alignment explanation
Indices: 14813848--14813968 Score: 138
Period size: 55 Copynumber: 2.2 Consensus size: 54
14813838 CGAACTGCCA
* *
14813848 AAAC-AACACGGGCGTTCGACACGCTCGTGCCTCGAAACTGTGGGTGAACCTGTC
1 AAACTAACACGGGCATGCGACACGCTCGTGCCTC-AAACTGTGGGTGAACCTGTC
* * *
14813902 AAACTAGCACGGGCATGCGACACGCTCGTGCC-CATCATCTGTGGGTGAATCTGTC
1 AAACTAACACGGGCATGCGACACGCTCGTGCCTCA--AACTGTGGGTGAACCTGTC
**
14813957 AAGTTAACACGG
1 AAACTAACACGG
14813969 CCGTGGACCT
Statistics
Matches: 56, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
53 1 0.02
54 5 0.09
55 50 0.89
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (54 bp):
AAACTAACACGGGCATGCGACACGCTCGTGCCTCAAACTGTGGGTGAACCTGTC
Found at i:14817720 original size:47 final size:47
Alignment explanation
Indices: 14817657--14817953 Score: 495
Period size: 47 Copynumber: 6.3 Consensus size: 47
14817647 TCCTTCGGGA
* * *
14817657 CTTATCACATTTATACACTTTCACATCCATCACATTGGTCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
14817704 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
14817751 CTTATCACACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTAT--CACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
** *
14817800 CTTATCACATATATGTACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
14817847 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
14817894 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
14817941 CTTATCACATATA
1 CTTATCACATATA
14817954 CATATCTTGT
Statistics
Matches: 235, Mismatches: 13, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
47 189 0.80
49 46 0.20
ACGTcount: A:0.27, C:0.30, G:0.08, T:0.35
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Done.