Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 42 of 284
Found at i:14817820 original size:96 final size:96
Alignment explanation
Indices: 14817662--14817949 Score: 481
Period size: 96 Copynumber: 3.0 Consensus size: 96
14817652 CGGGACTTAT
* * *
14817662 CACATTTATACACTTTCACATCCATCACATTGGTCATTCGGCCTTATCACATATATACACTTTCA
1 CACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCA
14817727 CATTCATCACATTGGCCATTCGGCCTTATCA
66 CATTCATCACATTGGCCATTCGGCCTTATCA
* **
14817758 CACATATATACACTTTCACATTCATCACATTGGCCACTCGGCCTTATCACATATATGTACTTTCA
1 CACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCA
*
14817823 CATTCATCACATTGGCCACTCGGCCTTAT--
66 CATTCATCACATTGGCCATTCGGCCTTATCA
* *
14817852 CACATATATACACTTTCACATTCATCACATTGGCCATTCGGTCTTATCTCATATATACACTTTCA
1 CACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCA
14817917 CATTCATCACATTGGCCATTCGGCCTTATCA
66 CATTCATCACATTGGCCATTCGGCCTTATCA
14817948 CA
1 CA
14817950 TATACATATC
Statistics
Matches: 177, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
94 88 0.50
96 89 0.50
ACGTcount: A:0.27, C:0.30, G:0.09, T:0.34
Consensus pattern (96 bp):
CACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCA
CATTCATCACATTGGCCATTCGGCCTTATCA
Found at i:14822452 original size:13 final size:13
Alignment explanation
Indices: 14822434--14822458 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14822424 AGACTTCCTC
14822434 ACACGGCCGTGTG
1 ACACGGCCGTGTG
14822447 ACACGGCCGTGT
1 ACACGGCCGTGT
14822459 CAATTTGGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.32, G:0.36, T:0.16
Consensus pattern (13 bp):
ACACGGCCGTGTG
Found at i:14830255 original size:19 final size:19
Alignment explanation
Indices: 14830231--14830272 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
14830221 ATTTGAGTTT
*
14830231 GTTTCTTCCTAAAATTTTA
1 GTTTCTGCCTAAAATTTTA
14830250 GTTTCTGCCTAAAATTTTA
1 GTTTCTGCCTAAAATTTTA
14830269 GTTT
1 GTTT
14830273 TTTCTTTGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.24, C:0.14, G:0.10, T:0.52
Consensus pattern (19 bp):
GTTTCTGCCTAAAATTTTA
Found at i:14836246 original size:16 final size:16
Alignment explanation
Indices: 14836199--14836250 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
14836189 AAAAATTATG
* *
14836199 TTTTCCAT-CTTCTAG
1 TTTTCCATCCTTCCAA
*
14836214 TTTTCTATTCCTT-CAA
1 TTTTCCA-TCCTTCCAA
14836230 TTTTCCATCCTTCCAA
1 TTTTCCATCCTTCCAA
14836246 TTTTC
1 TTTTC
14836251 TTTTCACTCT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
15 11 0.37
16 16 0.53
17 3 0.10
ACGTcount: A:0.15, C:0.29, G:0.02, T:0.54
Consensus pattern (16 bp):
TTTTCCATCCTTCCAA
Found at i:14838188 original size:17 final size:18
Alignment explanation
Indices: 14838154--14838187 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
14838144 AAATTAAAAG
14838154 ATGTATGGTTTCAGTTTT
1 ATGTATGGTTTCAGTTTT
14838172 ATGTAT-GTTT-AGTTTT
1 ATGTATGGTTTCAGTTTT
14838188 TTTTATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
17 4 0.25
18 6 0.38
ACGTcount: A:0.18, C:0.03, G:0.21, T:0.59
Consensus pattern (18 bp):
ATGTATGGTTTCAGTTTT
Found at i:14842257 original size:47 final size:46
Alignment explanation
Indices: 14842157--14842279 Score: 149
Period size: 47 Copynumber: 2.7 Consensus size: 46
14842147 TTCACATAAT
* * * * *
14842157 GATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTCACT
1 GATGCCATATCCCAGATATGGTCTTATACGAATCACATATCACACC
* *
14842203 GATGCCATATCCCAAATATGGTCTTATAC-AATAGCATATATCACACC
1 GATGCCATATCCCAGATATGGTCTTATACGAAT--CACATATCACACC
*
14842250 GATGCCATATCCCAGATTTGGTCTTATACG
1 GATGCCATATCCCAGATATGGTCTTATACG
14842280 GAAATCACTT
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
45 3 0.05
46 25 0.38
47 37 0.57
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (46 bp):
GATGCCATATCCCAGATATGGTCTTATACGAATCACATATCACACC
Found at i:14842332 original size:31 final size:31
Alignment explanation
Indices: 14842297--14842414 Score: 182
Period size: 31 Copynumber: 3.8 Consensus size: 31
14842287 CTTGTCACTT
* *
14842297 GTAGCCGTAGCTACCACTATTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
* *
14842328 GTAGCCGGATCTACCACTTTTCACTGATTAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
14842359 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
* *
14842390 GTAGCAGAAGCTACCACTTTTCACT
1 GTAGCCGGAGCTACCACTTTTCACT
14842415 TGTCATTTGT
Statistics
Matches: 79, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 79 1.00
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (31 bp):
GTAGCCGGAGCTACCACTTTTCACTGATCAG
Found at i:14851962 original size:28 final size:28
Alignment explanation
Indices: 14851930--14852013 Score: 74
Period size: 28 Copynumber: 3.2 Consensus size: 28
14851920 AACTTCGATC
14851930 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * * *
14851958 ACGTGTATCAG-A-T-GGT-TAAG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
14851980 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
14852008 ACGTGT
1 ACGTGT
14852014 ACTGGATAAT
Statistics
Matches: 40, Mismatches: 8, Indels: 16
0.62 0.12 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.20
23 2 0.05
24 3 0.08
25 4 0.10
26 3 0.08
27 2 0.05
28 14 0.35
29 2 0.05
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:14851999 original size:50 final size:49
Alignment explanation
Indices: 14851882--14852057 Score: 201
Period size: 50 Copynumber: 3.5 Consensus size: 49
14851872 TGAGGTCGCA
* * * ** *
14851882 TGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAA-TTAG-TCACG
**
14851933 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAGATGGTTAAGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-AGATAATT-AGTCACG
* * * *
14851983 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAATTAGTCACG
14852032 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
14852058 TGCGTACCAG
Statistics
Matches: 108, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
49 30 0.28
50 44 0.41
51 34 0.31
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAATTAGTCACG
Found at i:14852069 original size:99 final size:101
Alignment explanation
Indices: 14851882--14852069 Score: 263
Period size: 99 Copynumber: 1.9 Consensus size: 101
14851872 TGAGGTCGCA
* * *
14851882 TGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGATAACTTCGATCACGTGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGATAACTTCGATCACATGTGTAGTACTAAG
* *
14851947 TGCAGGCTACTACGTGTATCAGATGGTTAAGTCACG
66 TGCAGGCTACTACGCGTACCAGATGGTTAAGTCACG
* ** * *
14851983 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAA-TT-GGTCGCATGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGATAACTTCGATCACATGTGTAGTACTAAG
*
14852046 TGCAGGCTACTATGCGTACCAGAT
66 TGCAGGCTACTACGCGTACCAGAT
14852070 AGCTTTAGCT
Statistics
Matches: 76, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
99 39 0.51
100 2 0.03
101 35 0.46
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (101 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGATAACTTCGATCACATGTGTAGTACTAAG
TGCAGGCTACTACGCGTACCAGATGGTTAAGTCACG
Found at i:14855412 original size:34 final size:35
Alignment explanation
Indices: 14855368--14855440 Score: 112
Period size: 34 Copynumber: 2.1 Consensus size: 35
14855358 GGCAAGCCAT
* *
14855368 ATTTGCTGTTGGAAGGGAACGACAGGGCCCTTTAA
1 ATTTGCTGTTGAAAGGGAACGACAAGGCCCTTTAA
*
14855403 ATTTG-TGTTGAAAGGGAACGATAAGGCCCTTTAA
1 ATTTGCTGTTGAAAGGGAACGACAAGGCCCTTTAA
14855437 ATTT
1 ATTT
14855441 AAAGAGAAGG
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
34 30 0.86
35 5 0.14
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (35 bp):
ATTTGCTGTTGAAAGGGAACGACAAGGCCCTTTAA
Found at i:14857921 original size:6 final size:6
Alignment explanation
Indices: 14857901--14857960 Score: 66
Period size: 6 Copynumber: 9.8 Consensus size: 6
14857891 ATGAGGTACC
* * * * *
14857901 CTGTGTA CTGCTA CTGTTA CTGCTA CTGTTA CTGCTA TTGTTA CTATTA
1 CTGT-TA CTGTTA CTGTTA CTGTTA CTGTTA CTGTTA CTGTTA CTGTTA
14857950 CTGTTA CTGTT
1 CTGTTA CTGTT
14857961 GCCGTTACGG
Statistics
Matches: 43, Mismatches: 10, Indels: 1
0.80 0.19 0.02
Matches are distributed among these distances:
6 40 0.93
7 3 0.07
ACGTcount: A:0.17, C:0.20, G:0.17, T:0.47
Consensus pattern (6 bp):
CTGTTA
Found at i:14857923 original size:12 final size:12
Alignment explanation
Indices: 14857901--14857958 Score: 80
Period size: 12 Copynumber: 4.8 Consensus size: 12
14857891 ATGAGGTACC
14857901 CTGTGTACTGCTA
1 CTGT-TACTGCTA
14857914 CTGTTACTGCTA
1 CTGTTACTGCTA
14857926 CTGTTACTGCTA
1 CTGTTACTGCTA
* **
14857938 TTGTTACTATTA
1 CTGTTACTGCTA
14857950 CTGTTACTG
1 CTGTTACTG
14857959 TTGCCGTTAC
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
12 36 0.90
13 4 0.10
ACGTcount: A:0.17, C:0.21, G:0.17, T:0.45
Consensus pattern (12 bp):
CTGTTACTGCTA
Found at i:14871001 original size:33 final size:33
Alignment explanation
Indices: 14870964--14871031 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 33
14870954 GCCGGTGGAT
*
14870964 GTCGTAGGGAGTACATCATCTCTTCTTGTAGAC
1 GTCGTAAGGAGTACATCATCTCTTCTTGTAGAC
*
14870997 GTCGTAAGGAGTACATCATCTCTTCTTGTGGAC
1 GTCGTAAGGAGTACATCATCTCTTCTTGTAGAC
14871030 GT
1 GT
14871032 TTCGTAACGT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.34
Consensus pattern (33 bp):
GTCGTAAGGAGTACATCATCTCTTCTTGTAGAC
Found at i:14872120 original size:126 final size:126
Alignment explanation
Indices: 14871807--14872181 Score: 490
Period size: 126 Copynumber: 3.0 Consensus size: 126
14871797 ATACTATTTT
* * * * * *
14871807 GAGCGTCGACGTGGGAGCTTTTTT-AATCAATTTTACTGACAGTGCATCCTGCTTAAAGCTTTTT
1 GAGCGTCCACGTGAGAGCTTTTTTCAAT-AATTTTACTAACAGTGCATCCTACTTGAAGCATTTT
*
14871871 TGACACTATTTGTTCA-TAACTGTCTTCTCAAAATTA-TTTTTCAGGAACTACTGTAGAAAAA
65 TGACACTATTTGTTCAGAAACT-TCTTCTCAAAATTATTTTTTCAGGAACTACTGTAGAAAAA
* * * * * *
14871932 TAGCGTCCACGTGAGAG--TTTTTCAGTAATTTTGCTCACAGTGCATCCTAGTTGAAGCGTTTTT
1 GAGCGTCCACGTGAGAGCTTTTTTCAATAATTTTACTAACAGTGCATCCTACTTGAAGCATTTTT
* * *
14871995 GGCACTATTTGTTCAGAAACTTCTTCTCAAAATTATTTTTTCAGGAATTACTATAGAAAAA
66 GACACTATTTGTTCAGAAACTTCTTCTCAAAATTATTTTTTCAGGAACTACTGTAGAAAAA
*
14872056 GAGCGTCCACGTGAGAGCTTTTTTCAATAATTTTACTAACAGTGCATCCTACCTGAAGCATTTTT
1 GAGCGTCCACGTGAGAGCTTTTTTCAATAATTTTACTAACAGTGCATCCTACTTGAAGCATTTTT
* ** * * *
14872121 CACACTATTTGTTCAGAGTCGTATTCTCAAAATTATTTTTTCAGGAACTACTGTGGAAAAA
66 GACACTATTTGTTCAGAAACTTCTTCTCAAAATTATTTTTTCAGGAACTACTGTAGAAAAA
14872182 AAAATCCTTA
Statistics
Matches: 215, Mismatches: 30, Indels: 9
0.85 0.12 0.04
Matches are distributed among these distances:
123 64 0.30
124 45 0.21
125 14 0.07
126 92 0.43
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.37
Consensus pattern (126 bp):
GAGCGTCCACGTGAGAGCTTTTTTCAATAATTTTACTAACAGTGCATCCTACTTGAAGCATTTTT
GACACTATTTGTTCAGAAACTTCTTCTCAAAATTATTTTTTCAGGAACTACTGTAGAAAAA
Found at i:14872328 original size:34 final size:34
Alignment explanation
Indices: 14872242--14872339 Score: 119
Period size: 35 Copynumber: 2.9 Consensus size: 34
14872232 ATATTATTTT
14872242 AAAAA-ATAAACCCTAATTTAATTAATTTTCTTA
1 AAAAACATAAACCCTAATTTAATTAATTTTCTTA
* * *
14872275 AAAAATACTAAACCTTAATTTAATTAATTTAT-TTT
1 AAAAACA-TAAACCCTAATTTAATTAATTT-TCTTA
**
14872310 AAACCCATAAACCCTAATTTAATTAATTTT
1 AAAAACATAAACCCTAATTTAATTAATTTT
14872340 AAAAAATAAA
Statistics
Matches: 56, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
33 6 0.11
34 22 0.39
35 27 0.48
36 1 0.02
ACGTcount: A:0.46, C:0.13, G:0.00, T:0.41
Consensus pattern (34 bp):
AAAAACATAAACCCTAATTTAATTAATTTTCTTA
Found at i:14872434 original size:42 final size:42
Alignment explanation
Indices: 14872388--14872470 Score: 132
Period size: 42 Copynumber: 2.0 Consensus size: 42
14872378 ACCCAAAACT
*
14872388 CTAAATTATTTTAACAAAACCCTAAACCCTACAAA-CCTAAGC
1 CTAAATTATTTTAACAAAACCCT-AACCCTAAAAACCCTAAGC
*
14872430 CTAAATTATTTTATCAAAACCCTAACCCTAAAAACCCTAAG
1 CTAAATTATTTTAACAAAACCCTAACCCTAAAAACCCTAAG
14872471 GACTAAACAT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
41 10 0.26
42 28 0.74
ACGTcount: A:0.45, C:0.28, G:0.02, T:0.25
Consensus pattern (42 bp):
CTAAATTATTTTAACAAAACCCTAACCCTAAAAACCCTAAGC
Found at i:14876068 original size:16 final size:16
Alignment explanation
Indices: 14876047--14876079 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
14876037 ATCACTTTGG
14876047 ATTGGATTTTGAATTA
1 ATTGGATTTTGAATTA
14876063 ATTGGATTTTGAATTA
1 ATTGGATTTTGAATTA
14876079 A
1 A
14876080 GTTTAGTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.33, C:0.00, G:0.18, T:0.48
Consensus pattern (16 bp):
ATTGGATTTTGAATTA
Found at i:14880082 original size:47 final size:47
Alignment explanation
Indices: 14880031--14880135 Score: 129
Period size: 47 Copynumber: 2.2 Consensus size: 47
14880021 AAGGTGGAAG
*
14880031 TTATTGGTAGTTTATCTACAATTTTGGTGGCTTGTCCACGATTTTGA
1 TTATTGGTAGTTTATCTACAATTTTGGTGGCTTGTCCACAATTTTGA
* * *** * *
14880078 TTATTGGCAATTTATCTGTGATTTTGTTGGCTTGTCTACAATTTTGA
1 TTATTGGTAGTTTATCTACAATTTTGGTGGCTTGTCCACAATTTTGA
*
14880125 TTATTGATAGT
1 TTATTGGTAGT
14880136 GTAACGCCCC
Statistics
Matches: 47, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.20, C:0.10, G:0.20, T:0.50
Consensus pattern (47 bp):
TTATTGGTAGTTTATCTACAATTTTGGTGGCTTGTCCACAATTTTGA
Found at i:14881492 original size:47 final size:47
Alignment explanation
Indices: 14881376--14881553 Score: 200
Period size: 47 Copynumber: 3.8 Consensus size: 47
14881366 ATAATTTCAC
* * *
14881376 CCATAATGAACTCGGAACGCAACTCAACGAGCTCGGGTG-TTCACAT
1 CCATAATGAACTCGGAACACAACTCAACGAGTTCGGATGCTTCACAT
* * *
14881422 CCATAATGAACTCGAAACACAACTCAATGAGTTCGGATGCTT-GCAT
1 CCATAATGAACTCGGAACACAACTCAACGAGTTCGGATGCTTCACAT
* *
14881468 CCATAAGTGAACTCGGAACACAACTCAACGAGTTCGGATGCCTCATAAT
1 CCATAA-TGAACTCGGAACACAACTCAACGAGTTCGGATGCTTCA-CAT
* * * * *
14881517 TC-TCACGAACTCGGAACGCAACTCAACTAGTTCGGAT
1 CCATAATGAACTCGGAACACAACTCAACGAGTTCGGAT
14881554 CTCAATTTCC
Statistics
Matches: 112, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
46 43 0.38
47 64 0.57
48 2 0.02
49 3 0.03
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.21
Consensus pattern (47 bp):
CCATAATGAACTCGGAACACAACTCAACGAGTTCGGATGCTTCACAT
Found at i:14888741 original size:29 final size:29
Alignment explanation
Indices: 14888702--14888780 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
14888692 CTTAAGAATC
*
14888702 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
14888732 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
14888761 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
14888781 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:14892174 original size:27 final size:27
Alignment explanation
Indices: 14892130--14892261 Score: 160
Period size: 27 Copynumber: 4.9 Consensus size: 27
14892120 ACATACATCA
* * *
14892130 CATAGGGGTAAAATAGTCATCTTACCAT
1 CATAAGGGCAAAATAGTCATTTTACC-T
* *
14892158 -AAAAGGGCAAAACAGTCATTTTACCAT
1 CATAAGGGCAAAATAGTCATTTTACC-T
* *
14892185 -ATAAGGGCAAAACAATCATTTTACCT
1 CATAAGGGCAAAATAGTCATTTTACCT
*
14892211 CATAAGGGCAAAATAGTTATTTTACCT
1 CATAAGGGCAAAATAGTCATTTTACCT
14892238 CATAAGGGCAAAATAGTCATTTTA
1 CATAAGGGCAAAATAGTCATTTTA
14892262 TTAACTTGGG
Statistics
Matches: 92, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
26 1 0.01
27 91 0.99
ACGTcount: A:0.40, C:0.17, G:0.15, T:0.28
Consensus pattern (27 bp):
CATAAGGGCAAAATAGTCATTTTACCT
Found at i:14897548 original size:80 final size:79
Alignment explanation
Indices: 14897464--14897635 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
14897454 GGACTAAGAT
*
14897464 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
14897528 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
14897544 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
14897609 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
14897623 CCGAAGGCATTTG
1 CCGAAGGCATTTG
14897636 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:14897615 original size:39 final size:39
Alignment explanation
Indices: 14897410--14897633 Score: 211
Period size: 40 Copynumber: 5.6 Consensus size: 39
14897400 ATTGAATGCT
* * * * *
14897410 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATAT
1 ATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAA
**
14897450 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AA
1 ATCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAA
* *
14897489 ATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAA
1 A-TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAA
* *
14897530 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
1 ATCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAA
* * *
14897570 ATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAA
* * *
14897609 AACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATT
14897634 TGAACGAGGA
Statistics
Matches: 158, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 104 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAA
Found at i:14897653 original size:79 final size:80
Alignment explanation
Indices: 14897491--14897658 Score: 180
Period size: 79 Copynumber: 2.1 Consensus size: 80
14897481 AGATACAAAT
* * *
14897491 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGCCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
14897556 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * * *
14897571 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGCCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
14897635 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
14897650 TCC-GGTTAA
1 TCCGGGTTAA
14897659 ATTCCGAAGG
Statistics
Matches: 72, Mismatches: 15, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
78 6 0.08
79 48 0.67
80 18 0.25
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGTTAAGCCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:14899162 original size:40 final size:40
Alignment explanation
Indices: 14899103--14899285 Score: 228
Period size: 40 Copynumber: 4.6 Consensus size: 40
14899093 ATTCGAATGC
*
14899103 TATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACTA
1 TATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACTA
* * *
14899143 TATCCGGACTAAGATCCGAAGGCATTTGTGCAAGTTG-CTA
1 TATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACTA
* * * *
14899183 TATCCGGGCTAAGACCCGAAGGTATTTGTGCTAGCGACTA
1 TATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACTA
*
14899223 TATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACCA
1 TATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACTA
*
14899263 TATCCGGGCTAAGACCCGAAGGC
1 TATCCGGGCTAAGATCCGAAGGC
14899286 CTTGTGCGAG
Statistics
Matches: 123, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 1 0.01
40 119 0.97
41 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
TATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACTA
Found at i:14899242 original size:80 final size:80
Alignment explanation
Indices: 14899103--14899285 Score: 255
Period size: 80 Copynumber: 2.3 Consensus size: 80
14899093 ATTCGAATGC
* *
14899103 TATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGATCCGAAGGCAT
1 TATCCGGGCTAAGACCCGAAGGCTTTTATGCTAGCGACTATATCCGGACTAAGATCCGAAGGCAT
* *
14899168 TTGTGCAAGTTG-CTA
66 TTATGCAAG-TGACCA
* *
14899183 TATCCGGGCTAAGACCCGAAGG-TATTTGTGCTAGCGACTATATCCGGGCTAAG-TCCCGAAGGC
1 TATCCGGGCTAAGACCCGAAGGCT-TTTATGCTAGCGACTATATCCGGACTAAGAT-CCGAAGGC
*
14899246 ATTTATGCTAGTGACCA
64 ATTTATGCAAGTGACCA
14899263 TATCCGGGCTAAGACCCGAAGGC
1 TATCCGGGCTAAGACCCGAAGGC
14899286 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
79 4 0.04
80 88 0.96
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCTTTTATGCTAGCGACTATATCCGGACTAAGATCCGAAGGCAT
TTATGCAAGTGACCA
Found at i:14899590 original size:22 final size:22
Alignment explanation
Indices: 14899548--14899591 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
14899538 AAAATGTGCA
* *
14899548 TATATGAAGTTATTCATTTAGC
1 TATATGAAGTTATACACTTAGC
14899570 TATATGAATGTTATAC-CTTAGC
1 TATATGAA-GTTATACACTTAGC
14899592 CGAAACTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATATGAAGTTATACACTTAGC
Found at i:14906088 original size:41 final size:40
Alignment explanation
Indices: 14906031--14906111 Score: 153
Period size: 41 Copynumber: 2.0 Consensus size: 40
14906021 AATCTCGAGT
14906031 TCCCTACACTGGCTGCCGAAGTAGTCTGGGATTTAGGACC
1 TCCCTACACTGGCTGCCGAAGTAGTCTGGGATTTAGGACC
14906071 NTCCCTACACTGGCTGCCGAAGTAGTCTGGGATTTAGGACC
1 -TCCCTACACTGGCTGCCGAAGTAGTCTGGGATTTAGGACC
14906112 CACATTTTGC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCCTACACTGGCTGCCGAAGTAGTCTGGGATTTAGGACC
Found at i:14908598 original size:93 final size:93
Alignment explanation
Indices: 14908483--14908653 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
14908473 GCCCATAAGT
* * *
14908483 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCGTCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
14908548 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
14908576 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
14908641 TGAGTTCGGATGC
66 CGAGTTCGGATGC
14908654 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:14908650 original size:46 final size:46
Alignment explanation
Indices: 14908475--14908650 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
14908465 TGTAACCCGC
* * * *
14908475 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCGT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
14908521 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * *
14908571 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
14908614 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
14908651 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 63 0.58
47 29 0.27
48 2 0.02
49 1 0.01
50 2 0.02
51 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:14910630 original size:65 final size:65
Alignment explanation
Indices: 14910526--14910650 Score: 250
Period size: 65 Copynumber: 1.9 Consensus size: 65
14910516 TTGCACTTGT
14910526 GAAAGTACTATGGAATAGACATGGGGTAGACGAGGCTGCGTGGTAGCCTGAAGAGGCTATCTTTG
1 GAAAGTACTATGGAATAGACATGGGGTAGACGAGGCTGCGTGGTAGCCTGAAGAGGCTATCTTTG
14910591 GAAAGTACTATGGAATAGACATGGGGTAGACGAGGCTGCGTGGTAGCCTGAAGAGGCTAT
1 GAAAGTACTATGGAATAGACATGGGGTAGACGAGGCTGCGTGGTAGCCTGAAGAGGCTAT
14910651 GCAAAAACAG
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 60 1.00
ACGTcount: A:0.29, C:0.14, G:0.36, T:0.22
Consensus pattern (65 bp):
GAAAGTACTATGGAATAGACATGGGGTAGACGAGGCTGCGTGGTAGCCTGAAGAGGCTATCTTTG
Found at i:14912637 original size:16 final size:15
Alignment explanation
Indices: 14912604--14912632 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
14912594 ATTTTCTATG
14912604 TTTATTGTGTGTGAA
1 TTTATTGTGTGTGAA
14912619 TTTA-TGTGTGTGAA
1 TTTATTGTGTGTGAA
14912633 AATTTCGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.21, C:0.00, G:0.28, T:0.52
Consensus pattern (15 bp):
TTTATTGTGTGTGAA
Found at i:14914807 original size:27 final size:26
Alignment explanation
Indices: 14914777--14914840 Score: 83
Period size: 26 Copynumber: 2.4 Consensus size: 26
14914767 ATTTACTAAA
*
14914777 ATACCCTTAAGTATGAAAATTACCACT
1 ATACCCCTAAGTAT-AAAATTACCACT
* * *
14914804 ATACCCCTAGGTGTAAAATTACCATT
1 ATACCCCTAAGTATAAAATTACCACT
14914830 ATACCCCTAAG
1 ATACCCCTAAG
14914841 GTTAGTTTTA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 21 0.66
27 11 0.34
ACGTcount: A:0.38, C:0.25, G:0.09, T:0.28
Consensus pattern (26 bp):
ATACCCCTAAGTATAAAATTACCACT
Found at i:14914901 original size:27 final size:27
Alignment explanation
Indices: 14914871--14914932 Score: 83
Period size: 26 Copynumber: 2.3 Consensus size: 27
14914861 ATTTACTAAA
14914871 ATACCCCTAAGTATG-AAAATTACCACT
1 ATACCCCTAAG-ATGCAAAATTACCACT
* *
14914898 ATACCCCT-AGGTGCAAAATTACCATT
1 ATACCCCTAAGATGCAAAATTACCACT
14914924 ATACCCCTA
1 ATACCCCTA
14914933 GGGTTAGTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 2 0.06
26 21 0.68
27 8 0.26
ACGTcount: A:0.37, C:0.29, G:0.08, T:0.26
Consensus pattern (27 bp):
ATACCCCTAAGATGCAAAATTACCACT
Found at i:14914919 original size:94 final size:94
Alignment explanation
Indices: 14914758--14914943 Score: 345
Period size: 94 Copynumber: 2.0 Consensus size: 94
14914748 TAAACCCTAA
* *
14914758 AATAGTTGAATTTACTAAAATACCCTTAAGTATGAAAATTACCACTATACCCCTAGGTGTAAAAT
1 AATAGTTGAATTTACTAAAATACCCCTAAGTATGAAAATTACCACTATACCCCTAGGTGCAAAAT
14914823 TACCATTATACCCCTAAGGTTAGTTTTAC
66 TACCATTATACCCCTAAGGTTAGTTTTAC
14914852 AATAGTTGAATTTACTAAAATACCCCTAAGTATGAAAATTACCACTATACCCCTAGGTGCAAAAT
1 AATAGTTGAATTTACTAAAATACCCCTAAGTATGAAAATTACCACTATACCCCTAGGTGCAAAAT
*
14914917 TACCATTATACCCCTAGGGTTAGTTTT
66 TACCATTATACCCCTAAGGTTAGTTTT
14914944 GACTGAGATG
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
94 89 1.00
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.32
Consensus pattern (94 bp):
AATAGTTGAATTTACTAAAATACCCCTAAGTATGAAAATTACCACTATACCCCTAGGTGCAAAAT
TACCATTATACCCCTAAGGTTAGTTTTAC
Found at i:14915084 original size:28 final size:28
Alignment explanation
Indices: 14915037--14915152 Score: 119
Period size: 28 Copynumber: 4.2 Consensus size: 28
14915027 GGAGGAAGCG
* ** *
14915037 TTCTGGTGGCTATGAAACAAATATATGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
**
14915065 TTCTGGTGGCTCTGCCACAAATATCTAA
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* *
14915093 TTCTGGTGGCACTGCCACAAATATTTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * *
14915121 ATCTGGTGACTCTGTCAC-AATATCTG-
1 TTCTGGTGGCTCTGCCACAAATATCTGT
14915147 TTCTGG
1 TTCTGG
14915153 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
26 5 0.07
27 7 0.10
28 60 0.83
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTGT
Found at i:14920164 original size:27 final size:27
Alignment explanation
Indices: 14920134--14920195 Score: 83
Period size: 26 Copynumber: 2.3 Consensus size: 27
14920124 ATTTACTAAA
14920134 ATACCCCTAAGTATG-AAAATTACCACT
1 ATACCCCTAAG-ATGCAAAATTACCACT
* *
14920161 ATACCCCT-AGGTGCAAAATTACCATT
1 ATACCCCTAAGATGCAAAATTACCACT
14920187 ATACCCCTA
1 ATACCCCTA
14920196 GGGTTAGTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 2 0.06
26 21 0.68
27 8 0.26
ACGTcount: A:0.37, C:0.29, G:0.08, T:0.26
Consensus pattern (27 bp):
ATACCCCTAAGATGCAAAATTACCACT
Found at i:14922762 original size:43 final size:43
Alignment explanation
Indices: 14922713--14922957 Score: 332
Period size: 43 Copynumber: 5.7 Consensus size: 43
14922703 TATGTATGTG
* *
14922713 CGTGTAAGACCATGTCTGGGATGTTGGCATCGATATGTGATTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTA
* * * *
14922756 CGTGTAAGACCATGTTTAGGACGTTGGCATCGACATGTGATTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTA
*
14922799 CATGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTA
* *
14922842 CGTGTAAGACCACGTCTGGGACATTGGCATCAATATGTGATTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTA
* *
14922885 TGTGTAAGACC-CTGTCTAGGACAG-TGGCATCGATATGTGATTA
1 CGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATGTGATTA
* * *
14922928 CATGTAAGACGACGTTTGGGACGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACGTTGGCAT
14922958 TGTACGATAT
Statistics
Matches: 177, Mismatches: 21, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
42 2 0.01
43 174 0.98
44 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTA
Found at i:14922932 original size:129 final size:129
Alignment explanation
Indices: 14922713--14922957 Score: 384
Period size: 129 Copynumber: 1.9 Consensus size: 129
14922703 TATGTATGTG
* ** * *
14922713 CGTGTAAGACCATGTCTGGGATGTTGGCATCGATATGTGATTACGTGTAAGACCATGTTTAGGAC
1 CGTGTAAGACCACGTCTGGGACATTGGCATCAATATGTGATTACGTGTAAGACCATGTCTAGGAC
14922778 GTTGGCATCGACATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTA
66 GTTGGCATCGACATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTA
* *
14922842 CGTGTAAGACCACGTCTGGGACATTGGCATCAATATGTGATTATGTGTAAGACCCTGTCTAGGAC
1 CGTGTAAGACCACGTCTGGGACATTGGCATCAATATGTGATTACGTGTAAGACCATGTCTAGGAC
* * *
14922907 AG-TGGCATCGATATGTGATTACATGTAAGACGACGTTTGGGACGTTGGCAT
66 -GTTGGCATCGACATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
14922958 TGTACGATAT
Statistics
Matches: 105, Mismatches: 10, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
129 104 0.99
130 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (129 bp):
CGTGTAAGACCACGTCTGGGACATTGGCATCAATATGTGATTACGTGTAAGACCATGTCTAGGAC
GTTGGCATCGACATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTA
Found at i:14925976 original size:12 final size:12
Alignment explanation
Indices: 14925959--14925983 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14925949 TTGTGTGTTC
14925959 TTTATTTTATTT
1 TTTATTTTATTT
14925971 TTTATTTTATTT
1 TTTATTTTATTT
14925983 T
1 T
14925984 ATTTTTCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTATTTTATTT
Found at i:14930417 original size:12 final size:12
Alignment explanation
Indices: 14930400--14930425 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
14930390 TTGTGTGTTC
14930400 TTTATTTTATTT
1 TTTATTTTATTT
14930412 TTTATTTTATTT
1 TTTATTTTATTT
14930424 TT
1 TT
14930426 CACATTATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTATTTTATTT
Found at i:14935806 original size:47 final size:48
Alignment explanation
Indices: 14935752--14935883 Score: 180
Period size: 46 Copynumber: 2.8 Consensus size: 48
14935742 GTAGTTGTAT
*
14935752 TAATTAGAACACATTAAATAAACTTAAGACATATTAAATGGCTGAA-C
1 TAATTAGAACACATTAAATAAACTTAAGACATATTAAATGACTGAATC
* *
14935799 TAATTAGAACACATT-AATTAACTTAAGACATATT-AATTACTGAATC
1 TAATTAGAACACATTAAATAAACTTAAGACATATTAAATGACTGAATC
* * * *
14935845 TAATTAGAACATATTAAATAGACTCAAGACACATTAAAT
1 TAATTAGAACACATTAAATAAACTTAAGACATATTAAAT
14935884 ACTTAAACTA
Statistics
Matches: 74, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
45 8 0.11
46 33 0.45
47 30 0.41
48 3 0.04
ACGTcount: A:0.48, C:0.13, G:0.08, T:0.30
Consensus pattern (48 bp):
TAATTAGAACACATTAAATAAACTTAAGACATATTAAATGACTGAATC
Found at i:14947469 original size:52 final size:52
Alignment explanation
Indices: 14947389--14947490 Score: 161
Period size: 52 Copynumber: 2.0 Consensus size: 52
14947379 AACAACCATG
*
14947389 GCTTTTTTTCTTCTCAACATTCGACCATTAAAGAACAAAAATGCATGTGAAT
1 GCTTCTTTTCTTCTCAACATTCGACCATTAAAGAACAAAAATGCATGTGAAT
* *
14947441 GCTTCTTTTCTTCTCAATATTC-AGCCATTAAAGAAGAAAAATGCATGTGA
1 GCTTCTTTTCTTCTCAACATTCGA-CCATTAAAGAACAAAAATGCATGTGA
14947491 TTTTTTTTAT
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
51 1 0.02
52 45 0.98
ACGTcount: A:0.34, C:0.19, G:0.13, T:0.34
Consensus pattern (52 bp):
GCTTCTTTTCTTCTCAACATTCGACCATTAAAGAACAAAAATGCATGTGAAT
Found at i:14949122 original size:20 final size:21
Alignment explanation
Indices: 14949093--14949133 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
14949083 TTGACTCATG
14949093 TTTCTCACTTT-TTTCTCTTTT
1 TTTCTCACTTTCTTT-TCTTTT
14949114 TTTCT-ACTTTCTTTTCTTTT
1 TTTCTCACTTTCTTTTCTTTT
14949134 CTTTTTCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.05, C:0.22, G:0.00, T:0.73
Consensus pattern (21 bp):
TTTCTCACTTTCTTTTCTTTT
Found at i:14949141 original size:6 final size:6
Alignment explanation
Indices: 14949121--14949174 Score: 51
Period size: 6 Copynumber: 9.3 Consensus size: 6
14949111 TTTTTTCTAC
* * *
14949121 TTTC-T TTTC-T TTTCTT TTTCTT TTTCATT ATT-TT TCTCTT GTTCTT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTC-TT TTTCTT TTTCTT TTTCTT
14949167 TTTCTT TT
1 TTTCTT TT
14949175 GACTTTTCTA
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
5 12 0.30
6 24 0.60
7 4 0.10
ACGTcount: A:0.04, C:0.17, G:0.02, T:0.78
Consensus pattern (6 bp):
TTTCTT
Found at i:14960066 original size:40 final size:39
Alignment explanation
Indices: 14959989--14960074 Score: 109
Period size: 40 Copynumber: 2.2 Consensus size: 39
14959979 TAACGATTTA
* *
14959989 TCGGCTAAAATGGCACTTAGTGTGCGATTCGAAATAGCT
1 TCGGCTAAAATGGCACTTAGGGTGCAATTCGAAATAGCT
* * *
14960028 TCGGCTAAAAGTGGCACTTGGGGTGCAATTTGAGATAGCT
1 TCGGCTAAAA-TGGCACTTAGGGTGCAATTCGAAATAGCT
*
14960068 TTGGCTA
1 TCGGCTA
14960075 TATATATATA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 10 0.25
40 30 0.75
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (39 bp):
TCGGCTAAAATGGCACTTAGGGTGCAATTCGAAATAGCT
Found at i:14963189 original size:40 final size:40
Alignment explanation
Indices: 14963141--14963408 Score: 455
Period size: 40 Copynumber: 6.7 Consensus size: 40
14963131 GCAAACACAT
* * *
14963141 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
14963181 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* * *
14963221 TTGCCTTCGGGTCATAGCCCGGACATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
14963261 TTGCCTTCGGGTCTTAGCCCGGATATACCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
14963301 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
14963341 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
14963381 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
14963409 TCCAATGCTC
Statistics
Matches: 213, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 213 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:14964226 original size:105 final size:105
Alignment explanation
Indices: 14964044--14964252 Score: 409
Period size: 105 Copynumber: 2.0 Consensus size: 105
14964034 AGAATTTTAG
*
14964044 GCTTGGCCAATCAATACCAGATTTTTCTTAAAGTTTCCCCTGTTCACTGTTTGACTATTCTGACT
1 GCTTGGCCAATCAATACCAGATTTTTCTTAAAGTTTCCCCTGTTCACTGTTTGACTATTCTGACC
14964109 ACTCTTCACTACGAATCCAATTTCTCACTCTACAGAATTA
66 ACTCTTCACTACGAATCCAATTTCTCACTCTACAGAATTA
14964149 GCTTGGCCAATCAATACCAGATTTTTCTTAAAGTTTCCCCTGTTCACTGTTTGACTATTCTGACC
1 GCTTGGCCAATCAATACCAGATTTTTCTTAAAGTTTCCCCTGTTCACTGTTTGACTATTCTGACC
14964214 ACTCTTCACTACGAATCCAATTTCTCACTCTACAGAATT
66 ACTCTTCACTACGAATCCAATTTCTCACTCTACAGAATT
14964253 CAAAATGTGT
Statistics
Matches: 103, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
105 103 1.00
ACGTcount: A:0.25, C:0.27, G:0.11, T:0.37
Consensus pattern (105 bp):
GCTTGGCCAATCAATACCAGATTTTTCTTAAAGTTTCCCCTGTTCACTGTTTGACTATTCTGACC
ACTCTTCACTACGAATCCAATTTCTCACTCTACAGAATTA
Found at i:14974242 original size:22 final size:22
Alignment explanation
Indices: 14974211--14974256 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
14974201 ATTAAGGATG
*
14974211 TACTTGTTAAAGTAGATAAATT
1 TACTTATTAAAGTAGATAAATT
14974233 TACTTATTAAAGTAGATAAATT
1 TACTTATTAAAGTAGATAAATT
14974255 TA
1 TA
14974257 TTTTCTCTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.43, C:0.04, G:0.11, T:0.41
Consensus pattern (22 bp):
TACTTATTAAAGTAGATAAATT
Found at i:14975506 original size:16 final size:17
Alignment explanation
Indices: 14975484--14975527 Score: 65
Period size: 16 Copynumber: 2.7 Consensus size: 17
14975474 TGTTTATTTT
*
14975484 ATTTATTATTATATTAG
1 ATTTATTATTATATCAG
14975501 -TTTATTATTATATCAG
1 ATTTATTATTATATCAG
14975517 ATTTATT-TTAT
1 ATTTATTATTAT
14975528 TGTTATTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
16 19 0.76
17 6 0.24
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (17 bp):
ATTTATTATTATATCAG
Found at i:14981405 original size:19 final size:18
Alignment explanation
Indices: 14981373--14981424 Score: 63
Period size: 19 Copynumber: 2.9 Consensus size: 18
14981363 ATCCGACAAA
*
14981373 GCCC-AATAAGTGATAAT
1 GCCCGAATAAATGATAAT
*
14981390 GCCTGAAATAAATGATAAT
1 GCCCG-AATAAATGATAAT
14981409 GCCCG-ATAAATGATAA
1 GCCCGAATAAATGATAA
14981425 ATTATAAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 14 0.47
19 16 0.53
ACGTcount: A:0.44, C:0.15, G:0.17, T:0.23
Consensus pattern (18 bp):
GCCCGAATAAATGATAAT
Found at i:14985100 original size:17 final size:17
Alignment explanation
Indices: 14985040--14985100 Score: 54
Period size: 16 Copynumber: 3.5 Consensus size: 17
14985030 TAAAGGGTGA
14985040 GAAGTAAAAGTTTAGGAGG
1 GAAGTAAAAGTTT--GAGG
* *
14985059 AAAATAAAAAGTTTTG-GG
1 GAAGT-AAAAG-TTTGAGG
14985077 GAA-TAAAAGTTTGAGG
1 GAAGTAAAAGTTTGAGG
14985093 GAAGTAAA
1 GAAGTAAA
14985101 TGGGGAGTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
15 4 0.11
16 10 0.29
17 5 0.14
18 4 0.11
19 4 0.11
20 5 0.14
21 3 0.09
ACGTcount: A:0.48, C:0.00, G:0.30, T:0.23
Consensus pattern (17 bp):
GAAGTAAAAGTTTGAGG
Found at i:14986936 original size:101 final size:99
Alignment explanation
Indices: 14986748--14986943 Score: 284
Period size: 101 Copynumber: 2.0 Consensus size: 99
14986738 AGCCAAAGCT
* * * *
14986748 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGT
1 ATCTGATACACATAGTAGCCTACACTTAGTACTACACACGCGACCAATTATCCGGTACACATAGT
*
14986813 AGCCTACACTTAGTACTACACACTTGACCTAACC
66 AGCCTACACTTAGTACTACACACGTGACCTAACC
* * * *
14986847 ATCTGATACACATAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATA
1 ATCTGATACACATAGTAGCCTACACTTAGTACTACACACGCGA-CCAA-TTATCCGGTACACATA
*
14986912 GTAGCCTGCACTTAGTACTACACACGTGACCT
64 GTAGCCTACACTTAGTACTACACACGTGACCT
14986944 CACAATAGAT
Statistics
Matches: 85, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
99 39 0.46
100 3 0.04
101 43 0.51
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (99 bp):
ATCTGATACACATAGTAGCCTACACTTAGTACTACACACGCGACCAATTATCCGGTACACATAGT
AGCCTACACTTAGTACTACACACGTGACCTAACC
Found at i:14993461 original size:49 final size:49
Alignment explanation
Indices: 14993391--14993635 Score: 247
Period size: 49 Copynumber: 4.9 Consensus size: 49
14993381 TAGCTAAAAC
* * * *
14993391 TATCTGGTACGCATAGTAGCCTGAACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * * * * *
14993440 TATCCGGTATATGTAGTAGCCTGCACTTAGTACTACACGCGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AAT
* * * *
14993490 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-T
* * * * *
14993541 TATCGGGTACGCATATTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * * * *
14993590 AATCTGGTACATGTAGTAGACTGGACTTAGTACTACACACGTGACC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
14993636 TCACAATAGA
Statistics
Matches: 156, Mismatches: 37, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
49 74 0.47
50 45 0.29
51 37 0.24
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:15006932 original size:53 final size:52
Alignment explanation
Indices: 15006749--15007003 Score: 250
Period size: 55 Copynumber: 4.8 Consensus size: 52
15006739 ATTAGGGTTT
* *
15006749 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-CATTGGTAA-G-TTCTAAGGC
* * * ** *
15006804 AAAGAAATCATGTAAGACCATGTTAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C--TAAGGC
* * *
15006859 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTC-TAAGGC
*
15006912 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT-TCAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCT-AAGGC
* * * *
15006961 AAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
15007004 GTACCCGTGT
Statistics
Matches: 170, Mismatches: 24, Indels: 18
0.80 0.11 0.08
Matches are distributed among these distances:
49 40 0.24
51 1 0.01
52 8 0.05
53 45 0.26
54 8 0.05
55 65 0.38
56 3 0.02
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.21
Consensus pattern (52 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTAAGGC
Found at i:15006955 original size:108 final size:110
Alignment explanation
Indices: 15006756--15006956 Score: 291
Period size: 108 Copynumber: 1.8 Consensus size: 110
15006746 TTTAAGGATA
*
15006756 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAAGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAAGAAACCATGTAAGA
** *
15006821 CCATGTTAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGCCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * * *
15006866 CCATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAAGAAACCATGTAAG
*
15006928 ACCATGCCAAGACATGGCAATGGTAAGTT
65 ACCATGCCAAGACATGGCAATGATAAGTT
15006957 TCAAAAGGAT
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 3 0.04
108 45 0.56
109 7 0.09
110 26 0.32
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAAGAAACCATGTAAGA
CCATGCCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:15007216 original size:16 final size:16
Alignment explanation
Indices: 15007195--15007225 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
15007185 ATAAATTTGA
15007195 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
15007211 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
15007226 AGTGAATAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:15015142 original size:22 final size:22
Alignment explanation
Indices: 15015094--15015153 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
15015084 CTTAATCTGT
15015094 TTATGGCTCTGTGCCAGCCTAA
1 TTATGGCTCTGTGCCAGCCTAA
* * * * *
15015116 ATATGGCTCTGTGCTATCTTGA
1 TTATGGCTCTGTGCCAGCCTAA
*
15015138 TTATGGCTTTGTGCCA
1 TTATGGCTCTGTGCCA
15015154 ATCGTATTTA
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.17, C:0.22, G:0.23, T:0.38
Consensus pattern (22 bp):
TTATGGCTCTGTGCCAGCCTAA
Found at i:15015179 original size:27 final size:27
Alignment explanation
Indices: 15015139--15015217 Score: 122
Period size: 27 Copynumber: 2.9 Consensus size: 27
15015129 CTATCTTGAT
*
15015139 TATGGCTTTGTGCCAATCGTATTTACC
1 TATGGCTATGTGCCAATCGTATTTACC
*
15015166 TGTGGCTATGTGCCAATCGTATTTACC
1 TATGGCTATGTGCCAATCGTATTTACC
* *
15015193 TATGGCTATGTGCCTATCATATTTA
1 TATGGCTATGTGCCAATCGTATTTA
15015218 TTGATGACAC
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.20, C:0.20, G:0.19, T:0.41
Consensus pattern (27 bp):
TATGGCTATGTGCCAATCGTATTTACC
Found at i:15017085 original size:40 final size:39
Alignment explanation
Indices: 15017054--15017263 Score: 242
Period size: 40 Copynumber: 5.3 Consensus size: 39
15017044 GGACTAAGAT
* *
15017054 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
15017094 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
15017134 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * *
15017174 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
15017214 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
15017253 CCGAAGGCATT
1 CCGAAGGCATT
15017264 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 34 0.22
40 119 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:15017217 original size:120 final size:120
Alignment explanation
Indices: 15017001--15017263 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 120
15016991 TTGAATGCTG
* *
15017001 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
15017065 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
15017121 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * * *
15017184 TCGTGCGAGTTATTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
15017240 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
15017264 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 38 0.31
120 74 0.61
121 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:15017283 original size:79 final size:80
Alignment explanation
Indices: 15017002--15017298 Score: 230
Period size: 80 Copynumber: 3.7 Consensus size: 80
15016992 TGAATGCTGT
* ** * * * **
15017002 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
15017065 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* * * * **
15017082 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
15017146 GTGCGAGTTATTAAAT
65 GTGCGAGTTACTAAAA
* ** * * *
15017162 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
15017226 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
15017241 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
15017299 TACGTGATTT
Statistics
Matches: 183, Mismatches: 28, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
78 15 0.08
79 47 0.26
80 110 0.60
81 11 0.06
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:15031563 original size:18 final size:18
Alignment explanation
Indices: 15031540--15031577 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
15031530 GGAGAGTCAT
*
15031540 ACGCCCATGTGGGTTGGG
1 ACGCCCATGTGGCTTGGG
*
15031558 ACGCCCGTGTGGCTTGGG
1 ACGCCCATGTGGCTTGGG
15031576 AC
1 AC
15031578 ACGCTCGTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.11, C:0.26, G:0.42, T:0.21
Consensus pattern (18 bp):
ACGCCCATGTGGCTTGGG
Found at i:15044040 original size:48 final size:48
Alignment explanation
Indices: 15043969--15044247 Score: 299
Period size: 48 Copynumber: 5.8 Consensus size: 48
15043959 ATATTAGGGT
*
15043969 TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA
1 TATGTGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCGA
* ** * * **
15044017 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGAAATTGGCATTTA
1 TATGTGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCGA
** * * * * * ****
15044065 TATAAGAGCTAATGTAAGACTATGCCTGGGACACAATATCGGCCTCGA
1 TATGTGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCGA
* * **
15044113 TATGTGAGCCAGTGT-AGAACCATGTTTGGAACATGGCATCGGCATTTA
1 TATGTGAGCCAGTGTAAG-ACCATGTCTGGAACATGGCATCGGCCTCGA
* * *
15044161 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA
1 TATGTGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCGA
*
15044209 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCAT
1 TATGTGAGCCAGTGTAAGACCATGTCTGGAACATGGCAT
15044248 TGGCATTTAT
Statistics
Matches: 180, Mismatches: 49, Indels: 4
0.77 0.21 0.02
Matches are distributed among these distances:
47 2 0.01
48 176 0.98
49 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (48 bp):
TATGTGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCGA
Found at i:15044268 original size:96 final size:96
Alignment explanation
Indices: 15043969--15044274 Score: 470
Period size: 96 Copynumber: 3.2 Consensus size: 96
15043959 ATATTAGGGT
* *
15043969 TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCCAGTGTAA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCCAGTGTAA
**
15044034 GACCATGTTTGGAACATGAAATTGGCATTTA
66 GACCATGTTTGGAACATGGCATTGGCATTTA
* * * * ****
15044065 TATAAGAGCTAATGTAAGACTATGCCTGGGACACAATATCGGCCTCGATATGTGAGCCAGTGT-A
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCCAGTGTAA
*
15044129 GAACCATGTTTGGAACATGGCATCGGCATTTA
66 G-ACCATGTTTGGAACATGGCATTGGCATTTA
15044161 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCCAGTGTAA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCCAGTGTAA
15044226 GACCATGTTTGGAACATGGCATTGGCATTTA
66 GACCATGTTTGGAACATGGCATTGGCATTTA
*
15044257 TATGAGAGCTAGTATAAG
1 TATGAGAGCTAGTGTAAG
15044275 TGCAGCACTC
Statistics
Matches: 185, Mismatches: 23, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
95 2 0.01
96 181 0.98
97 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.27
Consensus pattern (96 bp):
TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCCAGTGTAA
GACCATGTTTGGAACATGGCATTGGCATTTA
Found at i:15048468 original size:31 final size:31
Alignment explanation
Indices: 15048424--15048509 Score: 138
Period size: 31 Copynumber: 2.8 Consensus size: 31
15048414 TCAATCTCAG
*
15048424 CATAT-ACTAGGCCGAAGCCTTTACATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
* *
15048454 CATGTCACTGGGCCGAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
15048485 CATATCACTGGGCCGAAGCCTTTAC
1 CATATCACTGGGCCGAAGCCTTTAC
15048510 TGTAAACGAT
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
30 4 0.08
31 46 0.92
ACGTcount: A:0.24, C:0.27, G:0.17, T:0.31
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTACATTATT
Found at i:15048754 original size:25 final size:25
Alignment explanation
Indices: 15048726--15048795 Score: 131
Period size: 25 Copynumber: 2.8 Consensus size: 25
15048716 CTCTTTTAAT
15048726 AACTGGGGCAAAGCCCTTTTTGGTA
1 AACTGGGGCAAAGCCCTTTTTGGTA
*
15048751 AACTGGGCCAAAGCCCTTTTTGGTA
1 AACTGGGGCAAAGCCCTTTTTGGTA
15048776 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
15048796 GCGCTTCCTC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTTGGTA
Found at i:15048859 original size:11 final size:11
Alignment explanation
Indices: 15048843--15048891 Score: 59
Period size: 11 Copynumber: 4.7 Consensus size: 11
15048833 TATATGAATT
15048843 TATCATGTGCA
1 TATCATGTGCA
*
15048854 TATCA--TACA
1 TATCATGTGCA
15048863 TATCATGTGCA
1 TATCATGTGCA
15048874 TATCATGT-CA
1 TATCATGTGCA
*
15048884 AATCATGT
1 TATCATGT
15048892 ATATAAAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
9 8 0.24
10 9 0.27
11 16 0.48
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (11 bp):
TATCATGTGCA
Found at i:15054441 original size:50 final size:48
Alignment explanation
Indices: 15054336--15054465 Score: 172
Period size: 50 Copynumber: 2.7 Consensus size: 48
15054326 TATCGATTCT
* *
15054336 ATGTCCCAGACATGGTCTTACACGAAATCACATATCGATGCCAATGCC
1 ATGTCCCAGACATGGTCTTACATGAAATCACATATAGATGCCAATGCC
* * **
15054384 ATATCCCAGATATGGTCTTACATGGGATCACTTATATAGATGCCAATGCC
1 ATGTCCCAGACATGGTCTTACATGAAATCAC--ATATAGATGCCAATGCC
15054434 ATGTCCCAGACATGGTCTTACAT-AAGATCACA
1 ATGTCCCAGACATGGTCTTACATGAA-ATCACA
15054466 CATAACCCTA
Statistics
Matches: 69, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
48 27 0.39
50 42 0.61
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (48 bp):
ATGTCCCAGACATGGTCTTACATGAAATCACATATAGATGCCAATGCC
Found at i:15059503 original size:13 final size:13
Alignment explanation
Indices: 15059485--15059511 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
15059475 ATATCAATAC
15059485 ATCATTTACACAT
1 ATCATTTACACAT
15059498 ATCATTTACACAT
1 ATCATTTACACAT
15059511 A
1 A
15059512 CTAACATCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.22, G:0.00, T:0.37
Consensus pattern (13 bp):
ATCATTTACACAT
Found at i:15073200 original size:46 final size:46
Alignment explanation
Indices: 15073069--15073235 Score: 165
Period size: 46 Copynumber: 3.6 Consensus size: 46
15073059 TGATATGTGT
** * *
15073069 GCTAGTGTAAGACATGTCTAGGACATGCATCGACC-ACATTATGAGA
1 GCTAGTGTAAGACATGTCTAGGACATGCATCGACCTTGA-GAAGAGA
* * * * * *
15073115 GCCAGTGTAAGACATGTCTGGGAGATGCATCGGCATTGAGACGAGA
1 GCTAGTGTAAGACATGTCTAGGACATGCATCGACCTTGAGAAGAGA
* * *
15073161 GCTAGTGTAAGACATGTCTAGGACATGCATCAACCTTGAGATATACAA
1 GCTAGTGTAAGACATGTCTAGGACATGCATCGACCTTGAGA-AGA-GA
* *
15073209 GCTAGTGTAAGACCTGTCTGGGACATG
1 GCTAGTGTAAGACATGTCTAGGACATG
15073236 GCGTCAGCTT
Statistics
Matches: 98, Mismatches: 20, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
46 70 0.71
47 2 0.02
48 26 0.27
ACGTcount: A:0.31, C:0.19, G:0.28, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTAGGACATGCATCGACCTTGAGAAGAGA
Found at i:15074929 original size:40 final size:40
Alignment explanation
Indices: 15074626--15074915 Score: 474
Period size: 40 Copynumber: 7.3 Consensus size: 40
15074616 TCCTTGTTCA
* * * * *
15074626 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
15074665 AATGCCTTCGGGACGTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
15074705 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
15074745 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
15074785 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
15074825 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
15074865 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
15074905 AAGGCCTTCGG
1 AATGCCTTCGG
15074916 ATCTTAGTCC
Statistics
Matches: 238, Mismatches: 12, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
39 33 0.14
40 205 0.86
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:15074952 original size:120 final size:120
Alignment explanation
Indices: 15074626--15074968 Score: 431
Period size: 120 Copynumber: 2.9 Consensus size: 120
15074616 TCCTTGTTCA
* * * * * * *
15074626 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACGTAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGAT
* * * *
15074690 TTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
66 ATAATAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
15074745 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGAT
* * *
15074810 TTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
66 ATAATAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * **
15074865 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGA-CTTAACCCGGA
* ** *
15074929 TATATTCGCTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
65 TATAATAAC-TAGCACGAAAGCCTTCGGGACTTAACCCGGA
15074969 CAGCATTCAA
Statistics
Matches: 201, Mismatches: 20, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
119 37 0.18
120 159 0.79
121 5 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGAT
ATAATAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:15078251 original size:25 final size:24
Alignment explanation
Indices: 15078202--15078254 Score: 70
Period size: 25 Copynumber: 2.2 Consensus size: 24
15078192 GTCATTAGGG
* *
15078202 TTACCGATTCCAACTCTTATGAGC
1 TTACCGATACCAACTCGTATGAGC
*
15078226 TTACCGATACTCAGCTCGTATGAGC
1 TTACCGATAC-CAACTCGTATGAGC
15078251 TTAC
1 TTAC
15078255 TATTTTTTAG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 9 0.36
25 16 0.64
ACGTcount: A:0.25, C:0.28, G:0.15, T:0.32
Consensus pattern (24 bp):
TTACCGATACCAACTCGTATGAGC
Found at i:15078789 original size:133 final size:133
Alignment explanation
Indices: 15078551--15078816 Score: 496
Period size: 133 Copynumber: 2.0 Consensus size: 133
15078541 TTATATGAAT
15078551 ACATAGCTAACTTGGTTAATGATCATGTGTTAGGCTTTGGCCAAATTGAATTGTGTTATGCTTTG
1 ACATAGCTAACTTGGTTAATGATCATGTGTTAGGCTTTGGCCAAATTGAATTGTGTTATGCTTTG
*
15078616 AGTTACTTGCCTGAATTGTGGTTAAATGGTAAGTTAAATTCTGTGTTATACGAACTTACTAAGCT
66 AGTTACTTACCTGAATTGTGGTTAAATGGTAAGTTAAATTCTGTGTTATACGAACTTACTAAGCT
15078681 TAA
131 TAA
*
15078684 ACATAGCTAACTTGGTTAATTATCATGTGTTAGGCTTTGGCCAAATTGAATTGTGTTATGCTTTG
1 ACATAGCTAACTTGGTTAATGATCATGTGTTAGGCTTTGGCCAAATTGAATTGTGTTATGCTTTG
* *
15078749 AGTTACTTACCTGAATTGTGTTTAAATGGTAAGTTAAATTCTGTGTTATATGAACTTACTAAGCT
66 AGTTACTTACCTGAATTGTGGTTAAATGGTAAGTTAAATTCTGTGTTATACGAACTTACTAAGCT
15078814 TAA
131 TAA
15078817 TTGATTTTGG
Statistics
Matches: 129, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
133 129 1.00
ACGTcount: A:0.28, C:0.12, G:0.20, T:0.40
Consensus pattern (133 bp):
ACATAGCTAACTTGGTTAATGATCATGTGTTAGGCTTTGGCCAAATTGAATTGTGTTATGCTTTG
AGTTACTTACCTGAATTGTGGTTAAATGGTAAGTTAAATTCTGTGTTATACGAACTTACTAAGCT
TAA
Found at i:15089246 original size:40 final size:40
Alignment explanation
Indices: 15089168--15089391 Score: 310
Period size: 40 Copynumber: 5.5 Consensus size: 40
15089158 ACCCAAGTAT
* *
15089168 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
15089207 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
15089247 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
15089287 CTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* *
15089330 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
15089370 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
15089392 CATCCGAATA
Statistics
Matches: 166, Mismatches: 12, Indels: 13
0.87 0.06 0.07
Matches are distributed among these distances:
39 12 0.07
40 117 0.70
41 1 0.01
43 36 0.22
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:15089364 original size:83 final size:80
Alignment explanation
Indices: 15089168--15089391 Score: 317
Period size: 83 Copynumber: 2.8 Consensus size: 80
15089158 ACCCAAGTAT
* * * *
15089168 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
**
15089232 CACTAGCATGAATGC
66 CACTAGCACAAATGC
* *
15089247 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
15089311 CAACTACTCGCACAAATGC
66 C-ACTA---GCACAAATGC
*
15089330 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
15089392 CATCCGAATA
Statistics
Matches: 129, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
79 13 0.10
80 49 0.38
83 67 0.52
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:15097467 original size:40 final size:40
Alignment explanation
Indices: 15097389--15097612 Score: 267
Period size: 40 Copynumber: 5.5 Consensus size: 40
15097379 ACCCAAGTAT
* *
15097389 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
15097428 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
15097468 CTTCGGGACTTAGCCCTGATATACTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
15097508 TTTCGAGACTTAGCCCAGG-TATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCC-GGATATAGTC-ACTA---GCACAAATGC
* *
15097551 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
15097591 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
15097613 CATCGAATAA
Statistics
Matches: 158, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 12 0.08
40 110 0.70
41 2 0.01
42 2 0.01
43 32 0.20
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:15097572 original size:83 final size:80
Alignment explanation
Indices: 15097389--15097612 Score: 267
Period size: 83 Copynumber: 2.8 Consensus size: 80
15097379 ACCCAAGTAT
* * *
15097389 CTTCGGGATTTAG-CCGGATATAGC-AACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CTTCGGGACTTAGCCCGGATATA-CTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
**
15097452 TCACTAGCATGAATGC
65 TCACTAGCACAAATGC
* * * *
15097468 CTTCGGGACTTAGCCCTGATATACTCACTAGCACAAATGCTTTCGAGACTTAGCCCAGG-TATAG
1 CTTCGGGACTTAGCCCGGATATACTAACTAGCACAAATGCCTTCGGGACTTAGCCC-GGATATAG
15097532 -CAACTACTCGCACAAATGC
65 TC-ACTA---GCACAAATGC
* *
15097551 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATACTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
15097613 CATCGAATAA
Statistics
Matches: 122, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
79 14 0.11
80 43 0.35
81 2 0.02
82 2 0.02
83 61 0.50
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATACTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:15103792 original size:48 final size:48
Alignment explanation
Indices: 15103721--15103838 Score: 175
Period size: 48 Copynumber: 2.5 Consensus size: 48
15103711 TGTGTGCTAA
* **
15103721 TGTAAGACATGTCTGGGACATGCATCGGCCTGGAGATATACAAGCCAG
1 TGTAAGACATGTCTGGGACATGCATCAGCCTCAAGATATACAAGCCAG
*
15103769 TGTAAGACATGTCTGGGACATGCATCAGCCTCAAGATATACAAGCTAG
1 TGTAAGACATGTCTGGGACATGCATCAGCCTCAAGATATACAAGCCAG
*
15103817 TGTAAGA-ACTGTCTGGAACATG
1 TGTAAGACA-TGTCTGGGACATG
15103839 GTGTTAGCTT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
47 1 0.02
48 63 0.98
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.23
Consensus pattern (48 bp):
TGTAAGACATGTCTGGGACATGCATCAGCCTCAAGATATACAAGCCAG
Found at i:15103983 original size:49 final size:49
Alignment explanation
Indices: 15103865--15103992 Score: 148
Period size: 49 Copynumber: 2.6 Consensus size: 49
15103855 TGTCAGTGTA
* * * * *
15103865 ACCTGTCTGGGACATGGCATCAACATCGATAAATGAGAGCCAGTGTAAG
1 ACCTGTCTGGGACATGGCATTAACATTGATAAATAAAAGCCAATGTAAG
* * * *
15103914 ACCTATCTGGGACATGGCATTAACCTTGATATATAAAAGTCAATGTAAG
1 ACCTGTCTGGGACATGGCATTAACATTGATAAATAAAAGCCAATGTAAG
* * *
15103963 ACCTGTGTGGGACATGGCATTGACTTTGAT
1 ACCTGTCTGGGACATGGCATTAACATTGAT
15103993 GTCCTAACTA
Statistics
Matches: 66, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
49 66 1.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (49 bp):
ACCTGTCTGGGACATGGCATTAACATTGATAAATAAAAGCCAATGTAAG
Found at i:15107586 original size:46 final size:46
Alignment explanation
Indices: 15107536--15107661 Score: 225
Period size: 46 Copynumber: 2.7 Consensus size: 46
15107526 TGGTTGAGCA
*
15107536 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
15107582 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
15107628 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
15107662 GGGGCGGGTT
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:15112003 original size:28 final size:28
Alignment explanation
Indices: 15111971--15112052 Score: 94
Period size: 28 Copynumber: 2.9 Consensus size: 28
15111961 ATGTCGTTGA
*
15111971 ATGCTCAAT-TCCTCGCACACTAAGTTCC
1 ATGCTCAATAT-CTCGCACACTAAGTGCC
* *
15111999 ATGCTCGATATCTTGCACACTAAGTGCC
1 ATGCTCAATATCTCGCACACTAAGTGCC
** *
15112027 ACACTCAATGTCTCGCACACTAAGTG
1 ATGCTCAATATCTCGCACACTAAGTG
15112053 ACGCACATAG
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
28 44 0.98
29 1 0.02
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.27
Consensus pattern (28 bp):
ATGCTCAATATCTCGCACACTAAGTGCC
Found at i:15112083 original size:40 final size:40
Alignment explanation
Indices: 15112039--15112142 Score: 118
Period size: 40 Copynumber: 2.6 Consensus size: 40
15112029 ACTCAATGTC
*
15112039 TCGCACACTAAGTGACGCACATAGCCGAAGCTATCTCAAA
1 TCGCACACTAAGTGACACACATAGCCGAAGCTATCTCAAA
* * * * * *
15112079 TCGCACACTAAGTGCCATATATAGCTGAAGCTATGTCGAA
1 TCGCACACTAAGTGACACACATAGCCGAAGCTATCTCAAA
* * *
15112119 TCGTACACTAAGTGCCACAAATAG
1 TCGCACACTAAGTGACACACATAG
15112143 TCGATTTGTC
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 54 1.00
ACGTcount: A:0.35, C:0.26, G:0.18, T:0.21
Consensus pattern (40 bp):
TCGCACACTAAGTGACACACATAGCCGAAGCTATCTCAAA
Found at i:15113933 original size:9 final size:9
Alignment explanation
Indices: 15113916--15113974 Score: 64
Period size: 9 Copynumber: 6.4 Consensus size: 9
15113906 ATTTAATTAT
15113916 TTTTTAAAA
1 TTTTTAAAA
*
15113925 TTTTAAAAA
1 TTTTTAAAA
* *
15113934 TATTAAAATA
1 TTTTTAAA-A
* *
15113944 TTTTTATAC
1 TTTTTAAAA
15113953 TTTTTAAAA
1 TTTTTAAAA
15113962 TTTTTAAAA
1 TTTTTAAAA
15113971 TTTT
1 TTTT
15113975 AATTTTAAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
9 35 0.85
10 6 0.15
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (9 bp):
TTTTTAAAA
Found at i:15113990 original size:13 final size:14
Alignment explanation
Indices: 15113963--15113991 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
15113953 TTTTTAAAAT
15113963 TTTTAAAATTTTAA
1 TTTTAAAATTTTAA
15113977 TTTTAAAA-TTTAA
1 TTTTAAAATTTTAA
15113990 TT
1 TT
15113992 AAATGCTAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TTTTAAAATTTTAA
Found at i:15114433 original size:14 final size:14
Alignment explanation
Indices: 15114410--15114439 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
15114400 TGCTTTTGAG
15114410 AAGTGATTTTAAAA
1 AAGTGATTTTAAAA
*
15114424 AAGTGCTTTTAAAA
1 AAGTGATTTTAAAA
15114438 AA
1 AA
15114440 CACTTTGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.50, C:0.03, G:0.13, T:0.33
Consensus pattern (14 bp):
AAGTGATTTTAAAA
Found at i:15116189 original size:29 final size:29
Alignment explanation
Indices: 15116157--15116234 Score: 79
Period size: 29 Copynumber: 2.7 Consensus size: 29
15116147 ATTTGACTTA
15116157 AAATT-TAAAATTTAAAAGATAAAAAAATT
1 AAATTCTAAAATTTAAAA-ATAAAAAAATT
* * *
15116186 AAATTACTAAAA-ATAAAAATATAATAATT
1 AAATT-CTAAAATTTAAAAATAAAAAAATT
*
15116215 AAATTCTAAATTTATAAAAA
1 AAATTCTAAAATT-TAAAAA
15116235 GTACTGGTGT
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
28 5 0.12
29 19 0.47
30 11 0.28
31 5 0.12
ACGTcount: A:0.64, C:0.03, G:0.01, T:0.32
Consensus pattern (29 bp):
AAATTCTAAAATTTAAAAATAAAAAAATT
Found at i:15116214 original size:24 final size:24
Alignment explanation
Indices: 15116162--15116215 Score: 60
Period size: 23 Copynumber: 2.3 Consensus size: 24
15116152 ACTTAAAATT
15116162 TAAAATT--TAAAAGATAAAAAAA
1 TAAAATTACTAAAAGATAAAAAAA
* *
15116184 TTAAATTACTAAAA-ATAAAAATA
1 TAAAATTACTAAAAGATAAAAAAA
15116207 TAATAATTA
1 TAA-AATTA
15116216 AATTCTAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 6 0.23
23 10 0.38
24 10 0.38
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
TAAAATTACTAAAAGATAAAAAAA
Found at i:15118335 original size:31 final size:31
Alignment explanation
Indices: 15118299--15118393 Score: 104
Period size: 31 Copynumber: 3.1 Consensus size: 31
15118289 ACATCCTAGC
* *
15118299 GACTTAAATAAAAACTTTT-TAATAATTCAGT
1 GACTTAAATAAAAA-TTTTAGAATAATTCAAT
*
15118330 GACTTAAATAAAAATTTTAGAATAGTTCAAT
1 GACTTAAATAAAAATTTTAGAATAATTCAAT
* * *
15118361 AACTTAAATGAAAATTATTA-AATAGTTCAAT
1 GACTTAAATAAAAATT-TTAGAATAATTCAAT
15118392 GA
1 GA
15118394 TCATTTTGTA
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
30 4 0.07
31 49 0.88
32 3 0.05
ACGTcount: A:0.48, C:0.07, G:0.08, T:0.36
Consensus pattern (31 bp):
GACTTAAATAAAAATTTTAGAATAATTCAAT
Found at i:15122059 original size:150 final size:150
Alignment explanation
Indices: 15121901--15122356 Score: 887
Period size: 150 Copynumber: 3.0 Consensus size: 150
15121891 TTCATTTTAA
15121901 TTCTTATAATATTTTTAAATATTATTTCTTTCCATCAATTCCACACTAATATTATTTTTAATTTA
1 TTCTTATAATATTTTTAAATATTATTTCTTTCCATCAATTCCACACTAATATTATTTTTAATTTA
15121966 TTTTGCATTCTTTACACTTAATTTATAATATGTTTCAATTTAATCATTTGAAAAAAATAAATTGA
66 TTTTGCATTCTTTACACTTAATTTATAATATGTTTCAATTTAATCATTTGAAAAAAATAAATTGA
15122031 GGTTATATGAGTATTTACCT
131 GGTTATATGAGTATTTACCT
15122051 TTCTTATAATATTTTTAAATATTATTTCTTTCCATCAATTCCACACTAATATTATTTTTAATTTA
1 TTCTTATAATATTTTTAAATATTATTTCTTTCCATCAATTCCACACTAATATTATTTTTAATTTA
15122116 TTTTGCATTCTTTACACTTAATTTATAATATGTTTCAATTTAATCATTTGAAAAAAATAAATTGA
66 TTTTGCATTCTTTACACTTAATTTATAATATGTTTCAATTTAATCATTTGAAAAAAATAAATTGA
15122181 GGTTATATGAGTATTTACCT
131 GGTTATATGAGTATTTACCT
15122201 TTCTTATAATATTTTTAAATATTATTTCTTTCCATCAATTCCACACTAATATTATTTTTAATTTA
1 TTCTTATAATATTTTTAAATATTATTTCTTTCCATCAATTCCACACTAATATTATTTTTAATTTA
*
15122266 TTTTGCATTCTTTACACTTAATTTATAATATGTTTCAATTTAATCCTTTG-AAAAAATAAATTGA
66 TTTTGCATTCTTTACACTTAATTTATAATATGTTTCAATTTAATCATTTGAAAAAAATAAATTGA
*
15122330 GGTTATACGAGTATTTACCT
131 GGTTATATGAGTATTTACCT
15122350 TTCTTAT
1 TTCTTAT
15122357 GCTAAATTTC
Statistics
Matches: 304, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
149 40 0.13
150 264 0.87
ACGTcount: A:0.33, C:0.12, G:0.05, T:0.50
Consensus pattern (150 bp):
TTCTTATAATATTTTTAAATATTATTTCTTTCCATCAATTCCACACTAATATTATTTTTAATTTA
TTTTGCATTCTTTACACTTAATTTATAATATGTTTCAATTTAATCATTTGAAAAAAATAAATTGA
GGTTATATGAGTATTTACCT
Found at i:15123639 original size:11 final size:11
Alignment explanation
Indices: 15123597--15123639 Score: 50
Period size: 12 Copynumber: 3.7 Consensus size: 11
15123587 TCATATCAAT
15123597 TCATTTCTACTC
1 TCATTTC-ACTC
*
15123609 TCATTTCCATTC
1 TCATTT-CACTC
15123621 TCATTTCACTC
1 TCATTTCACTC
*
15123632 TCAATTCA
1 TCATTTCA
15123640 TATTCAAATC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
11 11 0.41
12 15 0.56
13 1 0.04
ACGTcount: A:0.21, C:0.33, G:0.00, T:0.47
Consensus pattern (11 bp):
TCATTTCACTC
Found at i:15128117 original size:43 final size:43
Alignment explanation
Indices: 15128069--15128223 Score: 274
Period size: 43 Copynumber: 3.6 Consensus size: 43
15128059 GCTGGTATTA
* *
15128069 TATTCGGGCCTTCGAGCCTAGCAGGCTTAGTGCCGATGATATG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGATGATGTG
*
15128112 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGATGATGTG
*
15128155 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGATGATGTG
15128198 TATTCGGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
15128224 GTAATGTCGG
Statistics
Matches: 107, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 107 1.00
ACGTcount: A:0.14, C:0.25, G:0.32, T:0.29
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGATGATGTG
Found at i:15128620 original size:45 final size:42
Alignment explanation
Indices: 15128553--15128660 Score: 137
Period size: 45 Copynumber: 2.5 Consensus size: 42
15128543 TTGACTTGAT
* *
15128553 TATTCGGGCCTTTGAGCTTAGCAAACTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGT--GA-AC
*
15128598 TATTCGGGCCTTCGAGCCTAGCAAGCTATAATGCCGGTGAAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAC
15128640 TGATGTCGGGCC-TCGAGCCTA
1 T-AT-TCGGGCCTTCGAGCCTA
15128661 ACAGGCGAAA
Statistics
Matches: 58, Mismatches: 3, Indels: 6
0.87 0.04 0.09
Matches are distributed among these distances:
42 3 0.05
43 13 0.22
44 7 0.12
45 35 0.60
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (42 bp):
TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAC
Found at i:15131629 original size:25 final size:24
Alignment explanation
Indices: 15131566--15131621 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 24
15131556 TTTTCTTATA
15131566 TTAGTATTTAATTTTTTTTCCATT
1 TTAGTATTTAATTTTTTTTCCATT
*
15131590 TTGGTATATTTAATTTTTTTTCCATT
1 TTAG--TATTTAATTTTTTTTCCATT
15131616 TTAGTA
1 TTAGTA
15131622 CTTGAATTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 5 0.18
26 23 0.82
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.64
Consensus pattern (24 bp):
TTAGTATTTAATTTTTTTTCCATT
Found at i:15131897 original size:12 final size:11
Alignment explanation
Indices: 15131880--15131936 Score: 59
Period size: 10 Copynumber: 5.4 Consensus size: 11
15131870 TGACCAAACC
15131880 AAAAATATTGTA
1 AAAAATATT-TA
15131892 AAAAATA-TT-
1 AAAAATATTTA
*
15131901 AAAAAT-TGTA
1 AAAAATATTTA
15131911 AGAAAATATTT-
1 A-AAAATATTTA
15131922 AAAAATATTTA
1 AAAAATATTTA
15131933 AAAA
1 AAAA
15131937 TGTAAAAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 11
0.75 0.04 0.22
Matches are distributed among these distances:
9 7 0.18
10 11 0.29
11 11 0.29
12 9 0.24
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (11 bp):
AAAAATATTTA
Found at i:15131906 original size:21 final size:22
Alignment explanation
Indices: 15131880--15131936 Score: 77
Period size: 20 Copynumber: 2.7 Consensus size: 22
15131870 TGACCAAACC
15131880 AAAAATATTGTAAAAAATA-TT
1 AAAAATATTGTAAAAAATATTT
15131901 -AAAA-ATTGTAAGAAAATATTT
1 AAAAATATTGTAA-AAAATATTT
15131922 AAAAATATT-TAAAAA
1 AAAAATATTGTAAAAA
15131937 TGTAAAAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
19 7 0.22
20 10 0.31
21 5 0.16
22 7 0.22
23 3 0.09
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (22 bp):
AAAAATATTGTAAAAAATATTT
Found at i:15131928 original size:30 final size:32
Alignment explanation
Indices: 15131880--15131946 Score: 95
Period size: 30 Copynumber: 2.2 Consensus size: 32
15131870 TGACCAAACC
15131880 AAAAATATTGTAAAAAATA-TTAAAAATTGTAA
1 AAAAATATTGTAAAAAATATTTAAAAA-TGTAA
*
15131912 GAAAATATT-T-AAAAATATTTAAAAATGTAA
1 AAAAATATTGTAAAAAATATTTAAAAATGTAA
15131942 AAAAA
1 AAAAA
15131947 AATAAACAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
30 16 0.50
31 8 0.25
32 8 0.25
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (32 bp):
AAAAATATTGTAAAAAATATTTAAAAATGTAA
Found at i:15131992 original size:20 final size:20
Alignment explanation
Indices: 15131921--15132001 Score: 66
Period size: 18 Copynumber: 4.3 Consensus size: 20
15131911 AGAAAATATT
*
15131921 TAAAAATAT-TTAAAAA-TG
1 TAAAAATATAATAAAAATTG
*
15131939 TAAAAA-AAAATAAACAATTG
1 TAAAAATATAATAAA-AATTG
*
15131959 --AAAGT-TAATAAAAATTG
1 TAAAAATATAATAAAAATTG
* *
15131976 TAAAAATATATTAAAAATGG
1 TAAAAATATAATAAAAATTG
15131996 TAAAAA
1 TAAAAA
15132002 GTGTAACAGC
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
17 6 0.12
18 19 0.39
19 6 0.12
20 18 0.37
ACGTcount: A:0.64, C:0.01, G:0.07, T:0.27
Consensus pattern (20 bp):
TAAAAATATAATAAAAATTG
Found at i:15135428 original size:33 final size:33
Alignment explanation
Indices: 15135391--15135456 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
15135381 AAACTATGAG
15135391 TGCTGTAGTTTATTTCAATAAATTAAAGGTTTT
1 TGCTGTAGTTTATTTCAATAAATTAAAGGTTTT
15135424 TGCTGTAGTTTATTTCAATAAATTAAAGGTTTT
1 TGCTGTAGTTTATTTCAATAAATTAAAGGTTTT
15135457 GTGGGATGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.30, C:0.06, G:0.15, T:0.48
Consensus pattern (33 bp):
TGCTGTAGTTTATTTCAATAAATTAAAGGTTTT
Found at i:15138847 original size:53 final size:53
Alignment explanation
Indices: 15138765--15138870 Score: 151
Period size: 53 Copynumber: 2.0 Consensus size: 53
15138755 TCCTTAAATT
* *
15138765 TTTCCATATGATGTCATAACCCACTAGTTACAGTCTTACACGATATGGTCTTC
1 TTTCCATATGATATCATAACCCACCAGTTACAGTCTTACACGATATGGTCTTC
** *
15138818 TTTCCATATGATAAT-ATAACCCACCAGTTATGGTCTTTCACGATATGGTCTTC
1 TTTCCATATGAT-ATCATAACCCACCAGTTACAGTCTTACACGATATGGTCTTC
15138871 AGTGCCATGG
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
53 46 0.98
54 1 0.02
ACGTcount: A:0.26, C:0.24, G:0.13, T:0.37
Consensus pattern (53 bp):
TTTCCATATGATATCATAACCCACCAGTTACAGTCTTACACGATATGGTCTTC
Found at i:15140082 original size:68 final size:68
Alignment explanation
Indices: 15139973--15140109 Score: 220
Period size: 68 Copynumber: 2.0 Consensus size: 68
15139963 AGTCTCTCTG
*
15139973 TGTAACATACTAAATTAGGGCCCAGTCGGAACAGTGGTTTTGAGACCACAAATCTGAGATAGAAA
1 TGTAACATACTAAATTAGGGCCCAATCGGAACAGTGGTTTTGAGACCACAAATCTGAGATAGAAA
15140038 TAA
66 TAA
* * * * *
15140041 TGTAATATCCTAAATTAGGGCCCAATCGGAATAGTGGTTTTGTGACCACAAATTTGAGATAGAAA
1 TGTAACATACTAAATTAGGGCCCAATCGGAACAGTGGTTTTGAGACCACAAATCTGAGATAGAAA
15140106 TAA
66 TAA
15140109 T
1 T
15140110 TATTTTATGA
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
68 63 1.00
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.27
Consensus pattern (68 bp):
TGTAACATACTAAATTAGGGCCCAATCGGAACAGTGGTTTTGAGACCACAAATCTGAGATAGAAA
TAA
Found at i:15144378 original size:43 final size:43
Alignment explanation
Indices: 15144323--15144405 Score: 157
Period size: 43 Copynumber: 1.9 Consensus size: 43
15144313 TGATATATGG
*
15144323 GGCATCCGAGCTCGTTGAGTGGTTTGAGTTCATTATGGATACA
1 GGCATCCGAGCTCGTTGAGTGGTTTGAGTTCATAATGGATACA
15144366 GGCATCCGAGCTCGTTGAGTGGTTTGAGTTCATAATGGAT
1 GGCATCCGAGCTCGTTGAGTGGTTTGAGTTCATAATGGAT
15144406 GCGATACATG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.20, C:0.16, G:0.31, T:0.33
Consensus pattern (43 bp):
GGCATCCGAGCTCGTTGAGTGGTTTGAGTTCATAATGGATACA
Found at i:15147562 original size:27 final size:27
Alignment explanation
Indices: 15147524--15147584 Score: 95
Period size: 27 Copynumber: 2.3 Consensus size: 27
15147514 TTTAGAATCC
*
15147524 AAGACCGAATGGCGCAGCTTCTAGGGA
1 AAGACCGAATGGCGCAGCTTCTAAGGA
* *
15147551 AAGACCGCATGGCGCATCTTCTAAGGA
1 AAGACCGAATGGCGCAGCTTCTAAGGA
15147578 AAGACCG
1 AAGACCG
15147585 TCAAAAATGC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.31, C:0.25, G:0.30, T:0.15
Consensus pattern (27 bp):
AAGACCGAATGGCGCAGCTTCTAAGGA
Found at i:15156939 original size:28 final size:27
Alignment explanation
Indices: 15156907--15156961 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
15156897 AAAAATAAAT
*
15156907 AAAATTCAA-TATGTTAATAATTTAAGTG
1 AAAATT-AATTAT-TTAATAATTAAAGTG
*
15156935 AAAATTAATTATTTTATAATTAAAGTG
1 AAAATTAATTATTTAATAATTAAAGTG
15156962 TGAATTTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 15 0.62
28 9 0.38
ACGTcount: A:0.47, C:0.02, G:0.09, T:0.42
Consensus pattern (27 bp):
AAAATTAATTATTTAATAATTAAAGTG
Found at i:15157231 original size:13 final size:15
Alignment explanation
Indices: 15157213--15157246 Score: 54
Period size: 13 Copynumber: 2.4 Consensus size: 15
15157203 AATACAAGCC
15157213 AAATAGAAA-AACA-
1 AAATAGAAAGAACAT
15157226 AAATAGAAAGAACAT
1 AAATAGAAAGAACAT
15157241 AAATAG
1 AAATAG
15157247 GTCAAGCCTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 9 0.47
14 4 0.21
15 6 0.32
ACGTcount: A:0.71, C:0.06, G:0.12, T:0.12
Consensus pattern (15 bp):
AAATAGAAAGAACAT
Found at i:15177251 original size:28 final size:28
Alignment explanation
Indices: 15177219--15177296 Score: 104
Period size: 29 Copynumber: 2.8 Consensus size: 28
15177209 CATACATGCT
*
15177219 TATGGCCCACTAGGCCCAATCTCAT-TCA
1 TATGGCCCACTAGGCCCAATCGCATCT-A
*
15177247 TATGGCCCATTAGGCCCAAATCGCATCTA
1 TATGGCCCACTAGGCCC-AATCGCATCTA
*
15177276 TATGGCCCACGAGGCCCAATC
1 TATGGCCCACTAGGCCCAATC
15177297 ACTTTTACAG
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
28 20 0.45
29 23 0.52
30 1 0.02
ACGTcount: A:0.26, C:0.35, G:0.18, T:0.22
Consensus pattern (28 bp):
TATGGCCCACTAGGCCCAATCGCATCTA
Found at i:15178343 original size:4 final size:4
Alignment explanation
Indices: 15178336--15178370 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
15178326 ATATATACTA
15178336 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
15178371 AATACAAACC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:15181212 original size:43 final size:43
Alignment explanation
Indices: 15181185--15181300 Score: 128
Period size: 43 Copynumber: 2.7 Consensus size: 43
15181175 TAACACATAT
*
15181185 CGATGCCACTATCCCAAACAGGGTCTTACACGAAATCAATTAA
1 CGATGCCAATATCCCAAACAGGGTCTTACACGAAATCAATTAA
* * *
15181228 CGATGCCAATGTCCCAAACATGGTCTTACACGTAATCTCAA-T-A
1 CGATGCCAATATCCCAAACAGGGTCTTACACG-AA-ATCAATTAA
* ** *
15181271 CAATGCCAATGCCCCAAACATGGTCTTACA
1 CGATGCCAATATCCCAAACAGGGTCTTACA
15181301 TGTAATCATC
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
43 58 0.89
44 3 0.05
45 4 0.06
ACGTcount: A:0.34, C:0.29, G:0.14, T:0.22
Consensus pattern (43 bp):
CGATGCCAATATCCCAAACAGGGTCTTACACGAAATCAATTAA
Found at i:15190446 original size:47 final size:47
Alignment explanation
Indices: 15190377--15190546 Score: 340
Period size: 47 Copynumber: 3.6 Consensus size: 47
15190367 GATGCGAATG
15190377 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
15190424 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
15190471 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
15190518 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
15190547 ACTTATGGAT
Statistics
Matches: 123, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 123 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
Found at i:15190783 original size:30 final size:30
Alignment explanation
Indices: 15190749--15190809 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
15190739 GTAAGTGTTT
*
15190749 TGAAATGGACACTTTGGACAGGTATGTTCG
1 TGAAATGCACACTTTGGACAGGTATGTTCG
15190779 TGAAATGCACACTTTGGACAGGTATGTTCG
1 TGAAATGCACACTTTGGACAGGTATGTTCG
15190809 T
1 T
15190810 AACCCTCGGG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (30 bp):
TGAAATGCACACTTTGGACAGGTATGTTCG
Found at i:15193085 original size:27 final size:28
Alignment explanation
Indices: 15193055--15193109 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
15193045 CCAGTGTGGG
15193055 GAACTCGAGATTT-TTAAACCCGAGTGC
1 GAACTCGAGATTTGTTAAACCCGAGTGC
15193082 GAACTCGAGATTTGTTAAACCCGAGTGC
1 GAACTCGAGATTTGTTAAACCCGAGTGC
15193110 CAGCGGTGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
27 13 0.48
28 14 0.52
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (28 bp):
GAACTCGAGATTTGTTAAACCCGAGTGC
Found at i:15198052 original size:47 final size:47
Alignment explanation
Indices: 15197983--15198128 Score: 274
Period size: 47 Copynumber: 3.1 Consensus size: 47
15197973 AGGAAAAAAT
15197983 AGTTCGTGAAATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCG
1 AGTTCGTGAAATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCG
15198030 AGTTCGTGAAATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCG
1 AGTTCGTGAAATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCG
* *
15198077 AGTTTGTGAAATGTAACTAGGCATTCGAACTCGTTGAGTTGAGTCCG
1 AGTTCGTGAAATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCG
15198124 AGTTC
1 AGTTC
15198129 ACTTATGGAT
Statistics
Matches: 96, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 96 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (47 bp):
AGTTCGTGAAATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCG
Found at i:15204514 original size:43 final size:43
Alignment explanation
Indices: 15204458--15204547 Score: 128
Period size: 43 Copynumber: 2.1 Consensus size: 43
15204448 CACGGCCTCG
* *
15204458 CACACGGGCGTGTGAGGACATTTTGAAGGGTAC-ACGGGCTAGT
1 CACAAGGGCGTGTGAGGACATTTCGAAGGGT-CTACGGGCTAGT
* *
15204501 CACAAGGGTGTGTGAGGCCATTTCGAAGGGTCTACGGGCTAGT
1 CACAAGGGCGTGTGAGGACATTTCGAAGGGTCTACGGGCTAGT
15204544 CACA
1 CACA
15204548 TGAGCATGTG
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
42 1 0.02
43 41 0.98
ACGTcount: A:0.23, C:0.20, G:0.36, T:0.21
Consensus pattern (43 bp):
CACAAGGGCGTGTGAGGACATTTCGAAGGGTCTACGGGCTAGT
Found at i:15206648 original size:43 final size:42
Alignment explanation
Indices: 15206504--15206660 Score: 158
Period size: 43 Copynumber: 3.7 Consensus size: 42
15206494 GGTTACCGAG
* *
15206504 ATGTGATTACATGTAAGACCATGTCTGGGACATTGCCATTGT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGT
* * * *
15206546 ATTGTGAATACGTGTAAGACCATGTCTGGGACATTGGAATCTTT
1 A-TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATC-GT
* * * *
15206590 AT-TAGATTTC--GTAAGACCCTGTCTGTGACAGTGGCATCGAT
1 ATGT-GATTACATGTAAGACCATGTCTGGGACATTGGCATCG-T
*
15206631 ATGTGATTACATGTAAGACCATATCTGGGA
1 ATGTGATTACATGTAAGACCATGTCTGGGA
15206661 TATGGTATTG
Statistics
Matches: 91, Mismatches: 17, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
41 32 0.35
42 3 0.03
43 54 0.59
44 2 0.02
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.32
Consensus pattern (42 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGT
Found at i:15207777 original size:13 final size:13
Alignment explanation
Indices: 15207759--15207805 Score: 94
Period size: 13 Copynumber: 3.6 Consensus size: 13
15207749 GTCTAGACAC
15207759 GGGCGTGTCTATT
1 GGGCGTGTCTATT
15207772 GGGCGTGTCTATT
1 GGGCGTGTCTATT
15207785 GGGCGTGTCTATT
1 GGGCGTGTCTATT
15207798 GGGCGTGT
1 GGGCGTGT
15207806 GTGGCACATG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 34 1.00
ACGTcount: A:0.06, C:0.15, G:0.43, T:0.36
Consensus pattern (13 bp):
GGGCGTGTCTATT
Found at i:15214983 original size:9 final size:9
Alignment explanation
Indices: 15214969--15214996 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
15214959 GAAATGAGAT
15214969 AAAGAAAAG
1 AAAGAAAAG
15214978 AAAGAAAAG
1 AAAGAAAAG
15214987 AAAGAAAAG
1 AAAGAAAAG
15214996 A
1 A
15214997 GGAGTAGAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (9 bp):
AAAGAAAAG
Found at i:15216016 original size:18 final size:19
Alignment explanation
Indices: 15215993--15216029 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
15215983 TTAATACTAA
*
15215993 TTAAAAT-TTCGTAAAAAT
1 TTAAAATATCCGTAAAAAT
15216011 TTAAAATATCCGTAAAAAT
1 TTAAAATATCCGTAAAAAT
15216030 AAATATAGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.51, C:0.08, G:0.05, T:0.35
Consensus pattern (19 bp):
TTAAAATATCCGTAAAAAT
Found at i:15217728 original size:43 final size:43
Alignment explanation
Indices: 15217664--15217964 Score: 336
Period size: 43 Copynumber: 7.3 Consensus size: 43
15217654 ATAGGATTTC
* *
15217664 GATATGTGATTACGTGTAAGACCACGTCTAGGACGTTAGCATT
1 GATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATT
* * * * *
15217707 GAAATGTGATTACGTGTAAGACCACATCTGAGACGTTGTCATC
1 GATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATT
* *
15217750 AATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATC
1 GATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATT
* *
15217793 GATATGTGATTACGTGTAAGACCACGGCTGGGACATTGGCATT
1 GATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATT
*
15217836 GATATGTGATTAC--GTAAGACCACGTCTAGGAC----G--TT
1 GATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATT
* *
15217871 --TATGTGATTACGTGTAAGA-CACGTCTGGGATGTTGGCATC
1 GATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATT
* * *** *
15217911 GATATGTGATTACGAGTAAGACCACGTTTAATACGTTGGCATC
1 GATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATT
*
15217954 GATAGGTGATT
1 GATATGTGATT
15217965 CCGATATGTG
Statistics
Matches: 219, Mismatches: 28, Indels: 22
0.81 0.10 0.08
Matches are distributed among these distances:
33 11 0.05
34 10 0.05
35 8 0.04
37 1 0.00
38 1 0.00
40 1 0.00
41 17 0.08
42 18 0.08
43 152 0.69
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (43 bp):
GATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATT
Done.