Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 45 of 284
Found at i:16013096 original size:93 final size:93
Alignment explanation
Indices: 16012986--16013248 Score: 373
Period size: 93 Copynumber: 2.8 Consensus size: 93
16012976 CACCCGTAAG
* * * *
16012986 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTATCCATAAGTGAACTCGAACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
** *
16013051 ATGAGCTTGGATGCCTAGTTACATCTCA
66 ACAAGCTCGGATGCCTAGTTACATCTCA
* * * *
16013079 TGAACTCGGACTCAACTCAACGTGTTCGGATGTTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
16013144 ACAAGCTCGGATGCCTAGTTACATCTCA
66 ACAAGCTCGGATGCCTAGTTACATCTCA
* * * *
16013172 CGAACTTGGACTCAATTCAATGAGTTTGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
* *
16013237 ACGAGTTCGGAT
66 ACAAGCTCGGAT
16013249 TCCCAAATAT
Statistics
Matches: 149, Mismatches: 21, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 149 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACAAGCTCGGATGCCTAGTTACATCTCA
Found at i:16013140 original size:46 final size:46
Alignment explanation
Indices: 16012982--16013248 Score: 206
Period size: 46 Copynumber: 5.8 Consensus size: 46
16012972 AACCCACCCG
* * ** * *
16012982 TAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTTGCATCCA
* * *
16013028 TAAGTGAACTCGAACTCAACTCAATGAGCTT-GGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAG-TTCGGATG--T--TTGCATCCA
* *
16013076 TCA-TGAACTCGGACTCAACTCAACGTGTTCGGATGTTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTTGCATCCA
* * *
16013121 TAAGTGAACTCGGACTCAACTCAACAAGCTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG--T--TTGCATCCA
* * * * * * * *
16013169 TCA-CGAACTTGGACTCAATTCAATGAGTTTGGACGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTTGCATCCA
16013214 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAT
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAT
16013249 TCCCAAATAT
Statistics
Matches: 168, Mismatches: 37, Indels: 32
0.71 0.16 0.14
Matches are distributed among these distances:
43 9 0.05
44 2 0.01
45 6 0.04
46 84 0.50
47 51 0.30
48 6 0.04
49 2 0.01
50 8 0.05
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTTGCATCCA
Found at i:16019859 original size:16 final size:17
Alignment explanation
Indices: 16019835--16019869 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
16019825 TTTAGTCATT
*
16019835 ATTTTATAAAA-TCACA
1 ATTTAATAAAATTCACA
16019851 ATTTAATAAAATTCACA
1 ATTTAATAAAATTCACA
16019868 AT
1 AT
16019870 AGACCCATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.37
Consensus pattern (17 bp):
ATTTAATAAAATTCACA
Found at i:16026347 original size:42 final size:43
Alignment explanation
Indices: 16026263--16026347 Score: 109
Period size: 42 Copynumber: 2.0 Consensus size: 43
16026253 CCTCGGTACA
* *
16026263 AAATATGGACAACTAATTCTATTTAGTCCAAGATCTTACTCTT
1 AAATATGGACAACTAATTCGATTTAGTCCAAAATCTTACTCTT
** * *
16026306 AAATATGGACAACTTGTTCGA-TTAGTCTAAAATCTTGCTCTT
1 AAATATGGACAACTAATTCGATTTAGTCCAAAATCTTACTCTT
16026348 TCCCCGGTCT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
42 18 0.50
43 18 0.50
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.38
Consensus pattern (43 bp):
AAATATGGACAACTAATTCGATTTAGTCCAAAATCTTACTCTT
Found at i:16027729 original size:43 final size:43
Alignment explanation
Indices: 16027681--16027783 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
16027671 TTGGTTTTCA
16027681 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
16027724 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
16027767 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
16027784 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:16027800 original size:29 final size:29
Alignment explanation
Indices: 16027765--16027838 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 29
16027755 GTTGTGAGAT
* *
16027765 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
* * *
16027794 TGGCACTAAGTGTGTGAGTTTAAAGTATA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
16027823 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
16027839 TGGTTGATTA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
28 5 0.13
29 33 0.87
ACGTcount: A:0.26, C:0.14, G:0.32, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:16028208 original size:40 final size:40
Alignment explanation
Indices: 16028151--16028360 Score: 289
Period size: 40 Copynumber: 5.2 Consensus size: 40
16028141 TTGAATGATG
* *
16028151 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATA
* * *
16028191 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
16028231 TCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* *
16028271 TCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* *
16028311 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
16028351 TCCGTGCTAA
1 TCCGGGCTAA
16028361 ACCTCGAAGA
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
40 139 0.91
41 7 0.05
42 7 0.05
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
Found at i:16032025 original size:47 final size:47
Alignment explanation
Indices: 16031967--16032408 Score: 758
Period size: 47 Copynumber: 9.4 Consensus size: 47
16031957 CAGCCAACAC
*
16031967 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
16032014 AGTGTATATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
16032061 AGTGTATATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
16032108 AGTGTATATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
16032155 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
16032202 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
16032249 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
16032296 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * *
16032343 AGTGTATATATATGATAAGGCCTAATGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
16032390 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
16032409 TCCCGAAGGG
Statistics
Matches: 383, Mismatches: 12, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 383 1.00
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:16041935 original size:15 final size:15
Alignment explanation
Indices: 16041915--16041947 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
16041905 ATGTTCAAAC
16041915 AACTTGGTCTTGGGG
1 AACTTGGTCTTGGGG
16041930 AACTTGGTCTTGGGG
1 AACTTGGTCTTGGGG
16041945 AAC
1 AAC
16041948 CTAAACCTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.18, C:0.15, G:0.36, T:0.30
Consensus pattern (15 bp):
AACTTGGTCTTGGGG
Found at i:16050091 original size:45 final size:45
Alignment explanation
Indices: 16050010--16050273 Score: 202
Period size: 45 Copynumber: 6.0 Consensus size: 45
16050000 TGTAGGATTC
16050010 CGATATATGTGTTTTCGTGTAAGACCACGTCTAGGACATTGGCAT
1 CGATATATGTGTTTTCGTGTAAGACCACGTCTAGGACATTGGCAT
* * *
16050055 CGATATATGTGTTTTTTGTGTAAGACCACGTC-AGGACGTTGGGAT
1 CGATATATGTG-TTTTCGTGTAAGACCACGTCTAGGACATTGGCAT
* * * * * * * * *
16050100 AGTTATATGTTTTTTAGAGTAAGACCAAGTCTGGGACGTTGGCCT
1 CGATATATGTGTTTTCGTGTAAGACCACGTCTAGGACATTGGCAT
* * * * *
16050145 CGATATATGTGGTTACGTGTAAGACCATGTCTGGGACATCGGCAT
1 CGATATATGTGTTTTCGTGTAAGACCACGTCTAGGACATTGGCAT
* * * * * *
16050190 CG-TAT-T-TGATTT-GTGTAAGACC-CTATCTGGGGCAGTGGTAT
1 CGATATATGTGTTTTCGTGTAAGACCAC-GTCTAGGACATTGGCAT
* * ** *
16050231 CG--ATATGAGATAGCATGTAAGACCACGTCTAGGACATTGGCAT
1 CGATATATGTGTTTTCGTGTAAGACCACGTCTAGGACATTGGCAT
16050274 TATTCGATAT
Statistics
Matches: 172, Mismatches: 40, Indels: 16
0.75 0.18 0.07
Matches are distributed among these distances:
40 2 0.01
41 25 0.15
42 7 0.04
43 22 0.13
44 21 0.12
45 76 0.44
46 19 0.11
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (45 bp):
CGATATATGTGTTTTCGTGTAAGACCACGTCTAGGACATTGGCAT
Found at i:16051124 original size:45 final size:45
Alignment explanation
Indices: 16050943--16051145 Score: 225
Period size: 45 Copynumber: 4.6 Consensus size: 45
16050933 CCGTAGGATT
* *
16050943 TCGATATATGTGTTTTCGTGCAAGACCACGTCTAGGACATTGACA
1 TCGATATATGTGTTTTCGTGTAAGACCACGTCTAGGACATTGGCA
* * * *
16050988 TCGATATAAGTGTTTTTGTGTAAGACCACGTCTAGGACGTTGGAA
1 TCGATATATGTGTTTTCGTGTAAGACCACGTCTAGGACATTGGCA
* * * *
16051033 TCGATATATGTGTTTTCGAGTAAGACCAAGTCTGGGACGTTGGCA
1 TCGATATATGTGTTTTCGTGTAAGACCACGTCTAGGACATTGGCA
* * * * **
16051078 TCGATATATGTGGTTACGTGTAAGACCATGTCTGGGACATCAGCA
1 TCGATATATGTGTTTTCGTGTAAGACCACGTCTAGGACATTGGCA
*
16051123 TC-ATAT-T-TGATTT-GTGTAAGACC
1 TCGATATATGTGTTTTCGTGTAAGACC
16051146 CTATCTGGGG
Statistics
Matches: 137, Mismatches: 21, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
41 10 0.07
42 4 0.03
43 1 0.01
44 4 0.03
45 118 0.86
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (45 bp):
TCGATATATGTGTTTTCGTGTAAGACCACGTCTAGGACATTGGCA
Found at i:16051247 original size:934 final size:934
Alignment explanation
Indices: 16049440--16051694 Score: 3965
Period size: 934 Copynumber: 2.4 Consensus size: 934
16049430 AAGATATGAT
16049440 TTGGATTGATATGTTTTGTATTGGAATTTTTTATGATTTTGAGTAATTAGGACTAAATTTCAAAA
1 TTGGATTGATATGTTTTGTATTGGAATTTTTTATGATTTTGAGTAATTAGGACTAAATTTCAAAA
* * *
16049505 ACAATAAACTGAGGGACTAAAATGTGAAATAAATGAAATGTATGCACTTGTATGAACACTAGGAA
66 ATAATAAATTGAGGGACTAAAATGTGAAATAAATGAAATGTATGGACTTGTATGAACACTAGGAA
*
16049570 CATTTGGCCTAAGCATGATGTGTGCAAATTTTACATGTTTTGTATTTTATGTAATTTCGACTAAA
131 CATTTGGCCTAAGCATGATGTGTGCAAATTTTACATGTTTTGTGTTTTATGTAATTTCGACTAAA
16049635 TTGTAAAAAGTATGAAATGTCAGAGGTAAAATGTTAATTTGCCCATTTATGTGTTTTTGGACTAA
196 TTGTAAAAAGTATGAAATGTCAGAGGTAAAATGTTAATTTGCCCATTTATGTGTTTTTGGACTAA
16049700 ATTGAGTGAAAATATGTTTGAATGAGTTTAATTTGAATATGTTTAGATCAAGAACCAAAGAAATC
261 ATTGAGTGAAAATATGTTTGAATGAGTTTAATTTGAATATGTTTAGATCAAGAACCAAAGAAATC
* * * * * *
16049765 AGATTTAGATCGGTGGGAAACTAAAGTTGTCGACTAGTCATCCCGTTCCATTTTTCATCAACCGA
326 AGATTTGGATCGGGGGGAAACTAAAGTTGTCGACTAGTCATCCCATTCTATTTTTCATCATCCAA
16049830 GGTAAGTTTATAAGCAAATAGAATTGTTAATTTTATTTAAATATGAGTTATATATGTTGAAATGA
391 GGTAAGTTTATAAGCAAATAGAATTGTTAATTTTATTTAAATATGAGTTATATATGTTGAAATGA
*
16049895 AATATGTGAATATATATATGAGTTAGCTGAATGTGTACAAGCTTGGCAGCTATGTTCATGAATTT
456 AATATGTGAATATATATATGAGTTAGCCGAATGTGTACAAGCTTGGCAGCTATGTTCATGAATTT
* ** * * * * *
16049960 GTTTCGACTGAGTTACGACATTCGAATGTCCCGTCCAAACTGTAGGATTCCGATATATGTGTTTT
521 GTTTCGACTAAGTTACGACACCCAAAAGTCCCATACAAACCGTAGGATTCCGATATATGTGTTTT
* * *
16050025 CGTGTAAGACCACGTCTAGGACATTGGCATCGATATATGTGTTTTTTGTGTAAGACCACGTCAGG
586 CGTGCAAGACCACGTCTAGGACATTGACATCGATATAAGTGTTTTTTGTGTAAGACCACGTCAGG
* * * *
16050090 ACGTTGGGATAGTTATATGTTTTTTAGAGTAAGACCAAGTCTGGGACGTTGGCCTCGATATATGT
651 ACGTTGGAATAGATATATGTGTTTTAGAGTAAGACCAAGTCTGGGACGTTGGCATCGATATATGT
* *
16050155 GGTTACGTGTAAGACCATGTCTGGGACATCGGCATCGTATTTGATTTGTGTAAGACCCTATCTGG
716 GGTTACGTGTAAGACCATGTCTGGGACATCAGCATCATATTTGATTTGTGTAAGACCCTATCTGG
*
16050220 GGCAGTGGTATCGATATGAGATAGCATGTAAGACCACGTCTAGGACATTGGCATTATTCGATATA
781 GGCAGTGGCATCGATATGAGATAGCATGTAAGACCACGTCTAGGACATTGGCATTATTCGATATA
*
16050285 TGTTACTGTCTGAGTATCCTATTTGATTTCGAATAGTTCAATGGAGAATGATAAGTTATGATCGA
846 TGTTACTGTCTGAGTATCCTATTTGATTTCGAATAGTTCAATGGACAATGATAAGTTATGATCGA
**
16050350 AGGGTAAAACAAGCTAAAATAATG
911 AGGGTAAAACAAGCTAAAATAACA
* *
16050374 TTGGATTGATATGTTTTGCATTGGAATTTTTTATGATTTTGAGTAATTAGGACTGAATTTCAAAA
1 TTGGATTGATATGTTTTGTATTGGAATTTTTTATGATTTTGAGTAATTAGGACTAAATTTCAAAA
16050439 ATAATAAATTGAGGGACTAAAATGTGAAATAAATGAAATGTATGGACTTGTATGAACACTAGGAA
66 ATAATAAATTGAGGGACTAAAATGTGAAATAAATGAAATGTATGGACTTGTATGAACACTAGGAA
16050504 CATTTGGCCTAAGCATGATGTGTGCAAATTTTACATGTTTTGTGTTTTATGTAATTTCGACTAAA
131 CATTTGGCCTAAGCATGATGTGTGCAAATTTTACATGTTTTGTGTTTTATGTAATTTCGACTAAA
*
16050569 TTGTAAAAAGTATGAAATGTAAGAGGTAAAATGTTAATTTGCCCATTTATGTGTTTTTGGACTAA
196 TTGTAAAAAGTATGAAATGTCAGAGGTAAAATGTTAATTTGCCCATTTATGTGTTTTTGGACTAA
* *
16050634 ATTGAGTGAAAATATTTTTGAATGAGTTTAATATGAATATGTTTAGATCAAGAACCAAAGAAATC
261 ATTGAGTGAAAATATGTTTGAATGAGTTTAATTTGAATATGTTTAGATCAAGAACCAAAGAAATC
16050699 AGATTTGGATCGGGGGGAAACTAAAGTTGTCGACTAGTCATCCCATTCTATTTTTCATCATCCAA
326 AGATTTGGATCGGGGGGAAACTAAAGTTGTCGACTAGTCATCCCATTCTATTTTTCATCATCCAA
16050764 GGTAAGTTTATAAGCAAATAGAATTGTTAATTTTATTTAAATATGAGTTATATATGTTGAAATGA
391 GGTAAGTTTATAAGCAAATAGAATTGTTAATTTTATTTAAATATGAGTTATATATGTTGAAATGA
* *
16050829 AATATGTGAATATATATATGAGTTAGCCGAATGTGTACAAGCTTGGTAGCTATGTTTATGAATTT
456 AATATGTGAATATATATATGAGTTAGCCGAATGTGTACAAGCTTGGCAGCTATGTTCATGAATTT
* *
16050894 GTTTCGACTAAGTTACGACACCCAAAAGTCTCATACAAACCGTAGGATTTCGATATATGTGTTTT
521 GTTTCGACTAAGTTACGACACCCAAAAGTCCCATACAAACCGTAGGATTCCGATATATGTGTTTT
16050959 CGTGCAAGACCACGTCTAGGACATTGACATCGATATAAGTG-TTTTTGTGTAAGACCACGTCTAG
586 CGTGCAAGACCACGTCTAGGACATTGACATCGATATAAGTGTTTTTTGTGTAAGACCACGTC-AG
* *
16051023 GACGTTGGAATCGATATATGTGTTTTCGAGTAAGACCAAGTCTGGGACGTTGGCATCGATATATG
650 GACGTTGGAATAGATATATGTGTTTTAGAGTAAGACCAAGTCTGGGACGTTGGCATCGATATATG
16051088 TGGTTACGTGTAAGACCATGTCTGGGACATCAGCATCATATTTGATTTGTGTAAGACCCTATCTG
715 TGGTTACGTGTAAGACCATGTCTGGGACATCAGCATCATATTTGATTTGTGTAAGACCCTATCTG
* * * * *
16051153 GGGCAGTGGCATTGATATGAGATAGCATGTAAGACCACGTTTGGGACGTTGGCATTGTTCGATAT
780 GGGCAGTGGCATCGATATGAGATAGCATGTAAGACCACGTCTAGGACATTGGCATTATTCGATAT
* *
16051218 ATGTTACTGTCTGAGTATCCTGTTTGATTTCGAATGGTTCAATGGACAATGATAAGTTATGATCG
845 ATGTTACTGTCTGAGTATCCTATTTGATTTCGAATAGTTCAATGGACAATGATAAGTTATGATCG
16051283 AAGGGTAAAACAAGCTAAAATAACA
910 AAGGGTAAAACAAGCTAAAATAACA
* *
16051308 TTGGATTGATTTGTTTTGTATTGGAATTTTTTATGATTTTGAGTAATTAGGACTAAATTGCAAAA
1 TTGGATTGATATGTTTTGTATTGGAATTTTTTATGATTTTGAGTAATTAGGACTAAATTTCAAAA
16051373 ATAATAAATTGAGGGACTAAAATGTGAAATAAATGAAATGTATGGACTTGTATGAACACTAGGAA
66 ATAATAAATTGAGGGACTAAAATGTGAAATAAATGAAATGTATGGACTTGTATGAACACTAGGAA
* * *
16051438 AATTCGGCCTAAGCATGATGTGTGCAAATTTTACATGTTTTGTGTTTTATGTAATTTGGACTAAA
131 CATTTGGCCTAAGCATGATGTGTGCAAATTTTACATGTTTTGTGTTTTATGTAATTTCGACTAAA
* * *
16051503 TTGTAAAAAGTATGAAATGTCAGGGGTAAAATGGTAATTTGCCCATTTATGTG-TTTTAGACTAA
196 TTGTAAAAAGTATGAAATGTCAGAGGTAAAATGTTAATTTGCCCATTTATGTGTTTTTGGACTAA
16051567 ATTGAGTGAAAATATGTTTGAATGAGTTTAATTTGAATATGTTTAGATCAAGAACCAAAGAAATC
261 ATTGAGTGAAAATATGTTTGAATGAGTTTAATTTGAATATGTTTAGATCAAGAACCAAAGAAATC
16051632 AGATTTGGATCGGGGGGAAACTAAAGTTGTCGACTAGTCATCCCATTCTATTTTTCATCATCC
326 AGATTTGGATCGGGGGGAAACTAAAGTTGTCGACTAGTCATCCCATTCTATTTTTCATCATCC
16051695 GGAAGAAAAC
Statistics
Matches: 1257, Mismatches: 63, Indels: 3
0.95 0.05 0.00
Matches are distributed among these distances:
933 156 0.12
934 1101 0.88
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.35
Consensus pattern (934 bp):
TTGGATTGATATGTTTTGTATTGGAATTTTTTATGATTTTGAGTAATTAGGACTAAATTTCAAAA
ATAATAAATTGAGGGACTAAAATGTGAAATAAATGAAATGTATGGACTTGTATGAACACTAGGAA
CATTTGGCCTAAGCATGATGTGTGCAAATTTTACATGTTTTGTGTTTTATGTAATTTCGACTAAA
TTGTAAAAAGTATGAAATGTCAGAGGTAAAATGTTAATTTGCCCATTTATGTGTTTTTGGACTAA
ATTGAGTGAAAATATGTTTGAATGAGTTTAATTTGAATATGTTTAGATCAAGAACCAAAGAAATC
AGATTTGGATCGGGGGGAAACTAAAGTTGTCGACTAGTCATCCCATTCTATTTTTCATCATCCAA
GGTAAGTTTATAAGCAAATAGAATTGTTAATTTTATTTAAATATGAGTTATATATGTTGAAATGA
AATATGTGAATATATATATGAGTTAGCCGAATGTGTACAAGCTTGGCAGCTATGTTCATGAATTT
GTTTCGACTAAGTTACGACACCCAAAAGTCCCATACAAACCGTAGGATTCCGATATATGTGTTTT
CGTGCAAGACCACGTCTAGGACATTGACATCGATATAAGTGTTTTTTGTGTAAGACCACGTCAGG
ACGTTGGAATAGATATATGTGTTTTAGAGTAAGACCAAGTCTGGGACGTTGGCATCGATATATGT
GGTTACGTGTAAGACCATGTCTGGGACATCAGCATCATATTTGATTTGTGTAAGACCCTATCTGG
GGCAGTGGCATCGATATGAGATAGCATGTAAGACCACGTCTAGGACATTGGCATTATTCGATATA
TGTTACTGTCTGAGTATCCTATTTGATTTCGAATAGTTCAATGGACAATGATAAGTTATGATCGA
AGGGTAAAACAAGCTAAAATAACA
Found at i:16051995 original size:45 final size:45
Alignment explanation
Indices: 16051930--16052151 Score: 247
Period size: 45 Copynumber: 5.0 Consensus size: 45
16051920 GTAGGATTCT
**
16051930 GATATATGTGTTTTTGTGTAAGACCACGTCTGGGACGTTGGCATC
1 GATATATGTGTTTTCATGTAAGACCACGTCTGGGACGTTGGCATC
* * * *
16051975 GATATATGTGTTTTCATGTAAGACTATGTCTGGGATGTTGGGATC
1 GATATATGTGTTTTCATGTAAGACCACGTCTGGGACGTTGGCATC
*
16052020 GATATATGTGTTTTCGA-GTAAGACCAAGTCTGGGACGTTGGCATC
1 GATATATGTGTTTTC-ATGTAAGACCACGTCTGGGACGTTGGCATC
* * * *
16052065 GATATATGTGGTTACGTGTAAGACC-CGCTCTGGGGCAG-TGGCATC
1 GATATATGTGTTTTCATGTAAGACCACG-TCTGGGAC-GTTGGCATC
* * **
16052110 G--ATATGAGATAGCATGTAAGACCACGTCTGGGACGTTGGCAT
1 GATATATGTGTTTTCATGTAAGACCACGTCTGGGACGTTGGCAT
16052152 TGTTCGATAT
Statistics
Matches: 150, Mismatches: 21, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
42 1 0.01
43 30 0.20
44 3 0.02
45 114 0.76
46 2 0.01
ACGTcount: A:0.23, C:0.15, G:0.30, T:0.32
Consensus pattern (45 bp):
GATATATGTGTTTTCATGTAAGACCACGTCTGGGACGTTGGCATC
Found at i:16056266 original size:29 final size:29
Alignment explanation
Indices: 16056232--16056305 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
16056222 TAATCAACCG
*
16056232 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
16056261 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
16056290 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
16056306 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:16063584 original size:46 final size:47
Alignment explanation
Indices: 16063496--16063639 Score: 200
Period size: 47 Copynumber: 3.1 Consensus size: 47
16063486 GAAATGATAG
16063496 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
16063543 TAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * *
16063589 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
16063636 TAAG
1 TAAG
16063640 TCCCGAAGGG
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
46 40 0.47
47 45 0.53
ACGTcount: A:0.31, C:0.10, G:0.32, T:0.26
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:16065178 original size:200 final size:200
Alignment explanation
Indices: 16064835--16065235 Score: 784
Period size: 200 Copynumber: 2.0 Consensus size: 200
16064825 ATCATCAACA
16064835 TGCCTAACTATAGCCGAATGTGCAACATTAATCTATCATTTCTATCTCATTTAACACTTAACATT
1 TGCCTAACTATAGCCGAATGTGCAACATTAATCTATCATTTCTATCTCATTTAACACTTAACATT
16064900 TACCACATATCGATTCACCAAACTCTCCATCTATTCATGCTCTCATATTCGGTCACCCATACCCA
66 TACCACATATCGATTCACCAAACTCTCCATCTATTCATGCTCTCATATTCGGTCACCCATACCCA
* *
16064965 TACTAACCATATAAGTAATTAATCCTAGGGTTAAACACAAGTGCAATATTGAAGCACCATGGCCG
131 TACTAACCATATAACTAATTAATCCTAGGGTTAAACACAAGTGCAATATTGAAGCACCAAGGCCG
16065030 AACCT
196 AACCT
16065035 TGCCTAACTATAGCCGAATGTGCAACATTAATCTATCATTTCTATCTCATTTAACACTTAACATT
1 TGCCTAACTATAGCCGAATGTGCAACATTAATCTATCATTTCTATCTCATTTAACACTTAACATT
16065100 TACCACATATCGATTCACCAAACTCTCCATCTATTCATGCTCTCATATTCGGTCACCCATACCCA
66 TACCACATATCGATTCACCAAACTCTCCATCTATTCATGCTCTCATATTCGGTCACCCATACCCA
16065165 TACTAACCATATAACTAATTAATCCTAGGGTTAAACACAAGTGCAATATTGAAGCACCAAGGCCG
131 TACTAACCATATAACTAATTAATCCTAGGGTTAAACACAAGTGCAATATTGAAGCACCAAGGCCG
16065230 AACCT
196 AACCT
16065235 T
1 T
16065236 CATGAAGTTG
Statistics
Matches: 199, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
200 199 1.00
ACGTcount: A:0.33, C:0.27, G:0.10, T:0.30
Consensus pattern (200 bp):
TGCCTAACTATAGCCGAATGTGCAACATTAATCTATCATTTCTATCTCATTTAACACTTAACATT
TACCACATATCGATTCACCAAACTCTCCATCTATTCATGCTCTCATATTCGGTCACCCATACCCA
TACTAACCATATAACTAATTAATCCTAGGGTTAAACACAAGTGCAATATTGAAGCACCAAGGCCG
AACCT
Found at i:16068959 original size:38 final size:38
Alignment explanation
Indices: 16068908--16068982 Score: 141
Period size: 38 Copynumber: 2.0 Consensus size: 38
16068898 TCATGATTAA
16068908 CCATTCCAATGGCTAATCGTTTCCAAACATTTCCATGT
1 CCATTCCAATGGCTAATCGTTTCCAAACATTTCCATGT
*
16068946 CCATTCCAATGGCTAATCGTTTCCAAGCATTTCCATG
1 CCATTCCAATGGCTAATCGTTTCCAAACATTTCCATG
16068983 CCTCTTAATG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.33
Consensus pattern (38 bp):
CCATTCCAATGGCTAATCGTTTCCAAACATTTCCATGT
Found at i:16069744 original size:40 final size:40
Alignment explanation
Indices: 16069580--16069740 Score: 261
Period size: 40 Copynumber: 4.0 Consensus size: 40
16069570 GATTTAACTA
* *
16069580 GATATAGCT-ACTCGCTCAAATGCCTTCGGGACATAGCCCG
1 GATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCG
16069620 GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
1 GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
*
16069660 GATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCG
1 GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
* *
16069700 GTTATGGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
1 GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
16069740 G
1 G
16069741 TTATCATCCA
Statistics
Matches: 114, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
39 1 0.01
40 113 0.99
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
Found at i:16076877 original size:40 final size:40
Alignment explanation
Indices: 16076815--16076990 Score: 248
Period size: 40 Copynumber: 4.4 Consensus size: 40
16076805 AAGCCAAGTA
* * * *
16076815 CCTTCGGGATTTA-ACCGGATATAGCT-GCTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
16076854 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
16076894 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
16076934 CCTTCGGGACTTAGCCCAGTTATGGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
16076974 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
16076991 AGTTATCATC
Statistics
Matches: 124, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 12 0.10
40 112 0.90
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:16079951 original size:15 final size:15
Alignment explanation
Indices: 16079919--16079947 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
16079909 ATTTTCTATG
16079919 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
16079934 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
16079948 ATTTTCATGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:16081120 original size:45 final size:45
Alignment explanation
Indices: 16081052--16081232 Score: 229
Period size: 45 Copynumber: 4.0 Consensus size: 45
16081042 GTAGGATTCT
* *
16081052 GATATATATGTTTTCGTGTAAGACCACGTTTAGGACGTTGGCATC
1 GATATATGTGTTTTCGTGTAAGACCACGTCTAGGACGTTGGCATC
* *
16081097 GATTTATGTGTTTTTGTGTAAGACCACGTCTAGGACGTTAGG-ATC
1 GATATATGTGTTTTCGTGTAAGACCACGTCTAGGACGTT-GGCATC
* * *
16081142 GATATATGTGTTTTCGAGTAAGACCAAGTCTGGGACGTTGGCATC
1 GATATATGTGTTTTCGTGTAAGACCACGTCTAGGACGTTGGCATC
* * * * * *
16081187 GATATATGTGGTTACGTGTAAGACCATGTCTGGGACATCGGCATC
1 GATATATGTGTTTTCGTGTAAGACCACGTCTAGGACGTTGGCATC
16081232 G
1 G
16081233 TATTTGATTT
Statistics
Matches: 119, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
44 2 0.02
45 115 0.97
46 2 0.02
ACGTcount: A:0.24, C:0.15, G:0.28, T:0.33
Consensus pattern (45 bp):
GATATATGTGTTTTCGTGTAAGACCACGTCTAGGACGTTGGCATC
Found at i:16081249 original size:40 final size:45
Alignment explanation
Indices: 16081052--16081305 Score: 150
Period size: 45 Copynumber: 5.8 Consensus size: 45
16081042 GTAGGATTCT
* * * * * * * *
16081052 GATATATATGTTTTCGTGTAAGACCACGTTTAGGACGTTGGCATC
1 GATATATGTGATTACGTGTAAGACCATGTCTGGGACATCGGCATC
* * ** * * * *
16081097 GATTTATGTGTTTTTGTGTAAGACCACGTCTAGGACGTTAGG-ATC
1 GATATATGTGATTACGTGTAAGACCATGTCTGGGAC-ATCGGCATC
* * * * * *
16081142 GATATATGTGTTTTCGAGTAAGACCAAGTCTGGGACGTTGGCATC
1 GATATATGTGATTACGTGTAAGACCATGTCTGGGACATCGGCATC
*
16081187 GATATATGTGGTTACGTGTAAGACCATGTCTGGGACATCGGCATC
1 GATATATGTGATTACGTGTAAGACCATGTCTGGGACATCGGCATC
* * *
16081232 G-TAT-T-TGATT-TGT-TAAGACCCTGTCTGGGGCAGT-GGCATC
1 GATATATGTGATTACGTGTAAGACCATGTCTGGGACA-TCGGCATC
* * *
16081272 G--ATATGAGA-TAGCATGTAAGACCACGTCTGGGAC
1 GATATATGTGATTA-CGTGTAAGACCATGTCTGGGAC
16081306 GTTGAAGATA
Statistics
Matches: 172, Mismatches: 29, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
39 2 0.01
40 26 0.15
41 5 0.03
42 5 0.03
43 16 0.09
44 6 0.03
45 109 0.63
46 3 0.02
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.32
Consensus pattern (45 bp):
GATATATGTGATTACGTGTAAGACCATGTCTGGGACATCGGCATC
Found at i:16081320 original size:33 final size:33
Alignment explanation
Indices: 16081278--16081342 Score: 121
Period size: 33 Copynumber: 2.0 Consensus size: 33
16081268 CATCGATATG
16081278 AGATAGCATGTAAGACCACGTCTGGGACGTTGA
1 AGATAGCATGTAAGACCACGTCTGGGACGTTGA
*
16081311 AGATAGCATGTAAGACCACGTCTGGGATGTTG
1 AGATAGCATGTAAGACCACGTCTGGGACGTTG
16081343 GCATTGTTCG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (33 bp):
AGATAGCATGTAAGACCACGTCTGGGACGTTGA
Found at i:16084559 original size:51 final size:51
Alignment explanation
Indices: 16084483--16084582 Score: 182
Period size: 51 Copynumber: 2.0 Consensus size: 51
16084473 TTGAAAACCT
16084483 AAAACGGAATCTAAAACATAAATAAAGTCCAAAAGCAGTCGTGTGGCTACC
1 AAAACGGAATCTAAAACATAAATAAAGTCCAAAAGCAGTCGTGTGGCTACC
* *
16084534 AAAACGGAATCTAAAACATAAATAAAGTCTAAAAGTAGTCGTGTGGCTA
1 AAAACGGAATCTAAAACATAAATAAAGTCCAAAAGCAGTCGTGTGGCTA
16084583 TCTCCGAGTC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.46, C:0.16, G:0.18, T:0.20
Consensus pattern (51 bp):
AAAACGGAATCTAAAACATAAATAAAGTCCAAAAGCAGTCGTGTGGCTACC
Found at i:16085290 original size:22 final size:22
Alignment explanation
Indices: 16085242--16085301 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
16085232 GTAAATATGT
*
16085242 TTGGCACGAAGCCATAGTTAAG
1 TTGGCACAAAGCCATAGTTAAG
* ** *
16085264 ATGGCACAAAGCCATTTTTAGG
1 TTGGCACAAAGCCATAGTTAAG
*
16085286 TTGGCACAGAGCCATA
1 TTGGCACAAAGCCATA
16085302 ATCAGATTGT
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.23
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTTAAG
Found at i:16085732 original size:54 final size:55
Alignment explanation
Indices: 16085674--16085913 Score: 256
Period size: 54 Copynumber: 4.4 Consensus size: 55
16085664 TTACCCTACA
* * * *
16085674 GGGGTATTTCGGTAATTTTACACTA-CAAAGGTATTTCAG-TAATTTTACAAACTG
1 GGGGTATTTCGGTAATTTTACA-AACCGAGGGTATTTCTGATAATTTTACAAACTG
* * ** *
16085728 GGGGTATTTCGGTAATTTTATAAACCGAGGGTATTTTTG-TAATTTTACAATTTA
1 GGGGTATTTCGGTAATTTTACAAACCGAGGGTATTTCTGATAATTTTACAAACTG
* * * * *
16085782 AGGGTATTTCAGTAATTTTACAAATCGAGGGTATTT-TGATTATTTTACAACCTG
1 GGGGTATTTCGGTAATTTTACAAACCGAGGGTATTTCTGATAATTTTACAAACTG
** *** *
16085836 GGGGTATTTCATTAATTTTACAATTTGAGGGTATTTC-GATAATTTTACACACTG
1 GGGGTATTTCGGTAATTTTACAAACCGAGGGTATTTCTGATAATTTTACAAACTG
16085890 GGGGTATTTCGGTAATTTTACAAA
1 GGGGTATTTCGGTAATTTTACAAA
16085914 TCGGGGTCTT
Statistics
Matches: 156, Mismatches: 27, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
53 3 0.02
54 153 0.98
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (55 bp):
GGGGTATTTCGGTAATTTTACAAACCGAGGGTATTTCTGATAATTTTACAAACTG
Found at i:16085770 original size:81 final size:81
Alignment explanation
Indices: 16085675--16085909 Score: 271
Period size: 81 Copynumber: 2.9 Consensus size: 81
16085665 TACCCTACAG
** * ** *
16085675 GGGTATTTCGGTAATTTTACACTACAAAGGTATTTCAGTAATTTTACAAACTGGGGGTATTTCGG
1 GGGTATTTATGTAATTTTACAATTTAAGGGTATTTCAGTAATTTTACAAACTGGGGGTATTTCGG
16085740 TAATTTTATAAACC-GA
66 TAATTTTA-AAACCTGA
* * *
16085756 GGGTATTTTTGTAATTTTACAATTTAAGGGTATTTCAGTAATTTTACAAA-TCGAGGGTATTTTG
1 GGGTATTTATGTAATTTTACAATTTAAGGGTATTTCAGTAATTTTACAAACT-GGGGGTATTTCG
* * * *
16085820 ATTATTTTACAACCTGG
65 GTAATTTTAAAACCTGA
* *
16085837 GGGTATTTCAT-TAATTTTACAATTTGAGGGTATTTC-GATAATTTTACACACTGGGGGTATTTC
1 GGGTATTT-ATGTAATTTTACAATTTAAGGGTATTTCAG-TAATTTTACAAACTGGGGGTATTTC
16085900 GGTAATTTTA
64 GGTAATTTTA
16085910 CAAATCGGGG
Statistics
Matches: 130, Mismatches: 19, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
80 6 0.05
81 122 0.94
82 2 0.02
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.42
Consensus pattern (81 bp):
GGGTATTTATGTAATTTTACAATTTAAGGGTATTTCAGTAATTTTACAAACTGGGGGTATTTCGG
TAATTTTAAAACCTGA
Found at i:16085919 original size:27 final size:27
Alignment explanation
Indices: 16085675--16085920 Score: 196
Period size: 27 Copynumber: 9.1 Consensus size: 27
16085665 TACCCTACAG
* *
16085675 GGGTATTTCGGTAATTTTAC-ACTACAA
1 GGGTATTTCGGTAATTTTACAAAT-CGA
* * *
16085702 AGGTATTTCAGTAATTTTACAAA-CTGG
1 GGGTATTTCGGTAATTTTACAAATC-GA
* *
16085729 GGGTATTTCGGTAATTTTATAAACCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
** * **
16085756 GGGTATTTTTGTAATTTTACAATTTAA
1 GGGTATTTCGGTAATTTTACAAATCGA
*
16085783 GGGTATTTCAGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* * * * *
16085810 GGGTATTTTGATTATTTTAC-AACCTGG
1 GGGTATTTCGGTAATTTTACAAATC-GA
** * *
16085837 GGGTATTTCATTAATTTTACAATTTGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* * *
16085864 GGGTATTTCGATAATTTTACACA-CTGG
1 GGGTATTTCGGTAATTTTACAAATC-GA
16085891 GGGTATTTCGGTAATTTTACAAATCG-
1 GGGTATTTCGGTAATTTTACAAATCGA
16085917 GGGT
1 GGGT
16085921 CTTAACGACC
Statistics
Matches: 169, Mismatches: 43, Indels: 15
0.74 0.19 0.07
Matches are distributed among these distances:
26 8 0.05
27 157 0.93
28 4 0.02
ACGTcount: A:0.28, C:0.11, G:0.20, T:0.41
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAATCGA
Found at i:16087784 original size:20 final size:22
Alignment explanation
Indices: 16087749--16087789 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 22
16087739 CTTAATTTAC
16087749 TCCTCTAAGAACCCATTCAAAT
1 TCCTCTAAGAACCCATTCAAAT
16087771 TCCTC-AAG-ACCCATTCAAA
1 TCCTCTAAGAACCCATTCAAA
16087790 CTTAGAGTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 11 0.58
21 3 0.16
22 5 0.26
ACGTcount: A:0.37, C:0.34, G:0.05, T:0.24
Consensus pattern (22 bp):
TCCTCTAAGAACCCATTCAAAT
Found at i:16092671 original size:64 final size:63
Alignment explanation
Indices: 16092590--16092773 Score: 183
Period size: 67 Copynumber: 2.8 Consensus size: 63
16092580 AGACATTATG
* * *
16092590 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACTATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTA-GTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
16092654 ATGTAGCTAGGTCGCATGCGTGCTTCCAGGTGAAAGGCACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGATACTA-GTG-TA--CACCATGTAGACAAGAGAGCTACGAGAT
16092719 AA
62 AA
* * * *
16092721 AT-TGGCTAGGTCACATGGGTGGTACTGAGTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGATACT-AGTGTACACCATGTAG-ACAAGAGAGC
16092774 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.18
64 27 0.28
65 1 0.01
66 21 0.21
67 30 0.31
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGGTGATACTAGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:16098964 original size:20 final size:20
Alignment explanation
Indices: 16098941--16098978 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
16098931 GATTAGGAGT
16098941 TTTCAAAATCGTTCTGACGC
1 TTTCAAAATCGTTCTGACGC
*
16098961 TTTCGAAATCGTTCTGAC
1 TTTCAAAATCGTTCTGAC
16098979 TATGTCCCAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (20 bp):
TTTCAAAATCGTTCTGACGC
Found at i:16099749 original size:90 final size:92
Alignment explanation
Indices: 16099649--16099855 Score: 269
Period size: 92 Copynumber: 2.3 Consensus size: 92
16099639 TATCTGTGCC
* *
16099649 GATGCATGTCCCAGACATGTCTTACACTAG-CACATCTC-ATAGCTGATGCATGTCCCAGACATG
1 GATGCATGTCCCAGACATGTCTTACACTAGCCACATCTCAAT-GCCGATGCATGTACCAGACATG
* *
16099712 TCTTACACTGGC-TTACA-ACTCAAGGCT
65 TCTTACACTAGCATTACATAAT-AAGGCT
* * *
16099739 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCCGATGCGTGTACCAGACATG
1 GATGCATGTCCCAGACATGTCTTACACTAGC-CACATCTCAATGCCGATGCATGTACCAGACATG
* **
16099804 TCTTACACTAGCATTTCATAATGTGGCT
65 TCTTACACTAGCATTACATAATAAGGCT
16099832 GATGCATGTCCCAGACATGTCTTA
1 GATGCATGTCCCAGACATGTCTTA
16099856 TGCTGGCTCA
Statistics
Matches: 102, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
90 30 0.29
92 36 0.35
93 34 0.33
94 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.29
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCCACATCTCAATGCCGATGCATGTACCAGACATGT
CTTACACTAGCATTACATAATAAGGCT
Found at i:16099757 original size:46 final size:46
Alignment explanation
Indices: 16099649--16099855 Score: 235
Period size: 46 Copynumber: 4.5 Consensus size: 46
16099639 TATCTGTGCC
*
16099649 GATGCATGTCCCAGACATGTCTTACACTAGC--ACATCTCATA-GCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTTACAACTCA-AGGCT
*
16099693 GATGCATGTCCCAGACATGTCTTACACTGGCTTACAACTCAAGGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTTACAACTCAAGGCT
** * *
16099739 GATGCATGTCCCAGACATGTCTTACACTAGCTCT-CGTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCT-TACAACTCAAGGCT
* * * * **
16099785 GATGCGTGTACCAGACATGTCTTACACTAGCATTTCATAAT-GTGGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGC-TTACA-ACTCAAGGCT
16099832 GATGCATGTCCCAGACATGTCTTA
1 GATGCATGTCCCAGACATGTCTTA
16099856 TGCTGGCTCA
Statistics
Matches: 138, Mismatches: 18, Indels: 11
0.83 0.11 0.07
Matches are distributed among these distances:
44 30 0.22
45 1 0.01
46 79 0.57
47 27 0.20
48 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.29
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTTACAACTCAAGGCT
Found at i:16103486 original size:31 final size:31
Alignment explanation
Indices: 16103448--16103511 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
16103438 CCTTTTCATA
*
16103448 TTTCATATTTGATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
** * *
16103479 TTTCATATTTCATATTATTGGGCTGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
16103510 TT
1 TT
16103512 ACTGTAAACG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.23, C:0.19, G:0.17, T:0.41
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:16103781 original size:30 final size:30
Alignment explanation
Indices: 16103745--16103829 Score: 170
Period size: 30 Copynumber: 2.8 Consensus size: 30
16103735 TGGGGCATAA
16103745 GCCCTTTAATAACTGGGGCATAAGCTTTAT
1 GCCCTTTAATAACTGGGGCATAAGCTTTAT
16103775 GCCCTTTAATAACTGGGGCATAAGCTTTAT
1 GCCCTTTAATAACTGGGGCATAAGCTTTAT
16103805 GCCCTTTAATAACTGGGGCATAAGC
1 GCCCTTTAATAACTGGGGCATAAGC
16103830 CCTTTTGCAC
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 55 1.00
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (30 bp):
GCCCTTTAATAACTGGGGCATAAGCTTTAT
Found at i:16103945 original size:20 final size:20
Alignment explanation
Indices: 16103886--16103951 Score: 105
Period size: 20 Copynumber: 3.3 Consensus size: 20
16103876 TATGAATACA
*
16103886 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATG
*
16103906 TCATGTGCATAGCATACATG
1 TCATGTGCATATCATACATG
16103926 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATG
*
16103946 CCATGT
1 TCATGT
16103952 TTACTAAAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.33
Consensus pattern (20 bp):
TCATGTGCATATCATACATG
Found at i:16108783 original size:48 final size:48
Alignment explanation
Indices: 16108717--16108965 Score: 202
Period size: 48 Copynumber: 5.4 Consensus size: 48
16108707 TGATACCATA
* * *
16108717 TCCCAGATATGGTC-TACACTGGCTCTCATATATTTGTACTGATGCATG
1 TCCCAGACAT-GTCTTACACTGGCTCTCATATATCTGTACCGATGCATG
16108765 TCCCAGACATGTCTTACACTGGCTCTCATATATCTGTACCGATGCATG
1 TCCCAGACATGTCTTACACTGGCTCTCATATATCTGTACCGATGCATG
* * *
16108813 TCCCAAACATGTCTTACACTAGCACATC-TCATA---G--CCGATGCATG
1 TCCCAGACATGTCTTACACTGGCTC-TCAT-ATATCTGTACCGATGCATG
** * * *
16108857 TCTGAGACATGTCTTACACTGGCT-T-ACATCTC-G-AGGCAGATGCATG
1 TCCCAGACATGTCTTACACTGGCTCTCATATATCTGTA--CCGATGCATG
* * * * *
16108903 TCCTAGACATGTCTTACACTAGCATTTCATA-ATGTG-GCCGATGCATG
1 TCCCAGACATGTCTTACACTGGC-TCTCATATATCTGTACCGATGCATG
16108950 -CCCAGACATGTCTTAC
1 TCCCAGACATGTCTTAC
16108966 GTTGGCTCAC
Statistics
Matches: 165, Mismatches: 23, Indels: 28
0.76 0.11 0.13
Matches are distributed among these distances:
41 2 0.01
42 1 0.01
43 1 0.01
44 29 0.18
46 45 0.27
47 13 0.08
48 66 0.40
49 8 0.05
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (48 bp):
TCCCAGACATGTCTTACACTGGCTCTCATATATCTGTACCGATGCATG
Found at i:16108902 original size:46 final size:45
Alignment explanation
Indices: 16108757--16108965 Score: 185
Period size: 46 Copynumber: 4.6 Consensus size: 45
16108747 TATTTGTACT
* *
16108757 GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATATCTGTA-CC
1 GATGCATGTCCCAGACATGTCTTACACTGGCT-T-ACATCTC-G-AGCC
* * *
16108805 GATGCATGTCCCAAACATGTCTTACACTAGC--ACATCTCATAGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTC-GAGCC
** *
16108849 GATGCATGTCTGAGACATGTCTTACACTGGCTTACATCTCGAGGCA
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGA-GCC
* * * * *
16108895 GATGCATGTCCTAGACATGTCTTACACTAGCATTTCATAAT-GTGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGC-TTACAT-CTCG-AGCC
16108942 GATGCATG-CCCAGACATGTCTTAC
1 GATGCATGTCCCAGACATGTCTTAC
16108966 GTTGGCTCAC
Statistics
Matches: 134, Mismatches: 20, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
43 1 0.01
44 34 0.25
45 1 0.01
46 52 0.39
47 16 0.12
48 30 0.22
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGCC
Found at i:16108961 original size:92 final size:92
Alignment explanation
Indices: 16108757--16108965 Score: 239
Period size: 92 Copynumber: 2.3 Consensus size: 92
16108747 TATTTGTACT
* *
16108757 GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATATCTGTACCGATGCATGTCCCAAACA
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTCACATATCTGTACAGATGCATGTCCCAAACA
*
16108822 TGTCTTACACTAGCACATCTCATAGCC
66 TGTCTTACACTAGCACATCTAATAGCC
** * * *
16108849 GATGCATGTCTGAGACATGTCTTACACTGGCT-T-ACATCTC-G-AGGCAGATGCATGTCCTAGA
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTCACATATCTGTA--CAGATGCATGTCCCAAA
** *
16108910 CATGTCTTACACTAGCATTTCATAATGTGGCC
64 CATGTCTTACACTAGCACATC-TAA--TAGCC
16108942 GATGCATG-CCCAGACATGTCTTAC
1 GATGCATGTCCCAGACATGTCTTAC
16108966 GTTGGCTCAC
Statistics
Matches: 99, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
88 1 0.01
89 1 0.01
90 38 0.38
91 3 0.03
92 44 0.44
93 12 0.12
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCTCACATATCTGTACAGATGCATGTCCCAAACA
TGTCTTACACTAGCACATCTAATAGCC
Found at i:16110795 original size:43 final size:43
Alignment explanation
Indices: 16110661--16110801 Score: 176
Period size: 43 Copynumber: 3.3 Consensus size: 43
16110651 ATGAGATTGT
* *
16110661 GTGTAAAACCATGTCTGGAACATTGGCATC-ATATTGTGATTTC
1 GTGTAAGACCATGTCTGGGACATTGGCATCGATA-TGTGATTTC
* * *
16110704 GTATAAGACCATGTCTGGGACATTGGCATCGTTATGAGATTTC
1 GTGTAAGACCATGTCTGGGACATTGGCATCGATATGTGATTTC
* * **
16110747 GTGTAAGACCATGCCTGGGACATCGGCATCGATATGTGATAAC
1 GTGTAAGACCATGTCTGGGACATTGGCATCGATATGTGATTTC
*
16110790 ATGTAAGACCAT
1 GTGTAAGACCAT
16110802 ATCTAGGATA
Statistics
Matches: 84, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
43 82 0.98
44 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACATTGGCATCGATATGTGATTTC
Found at i:16112729 original size:53 final size:53
Alignment explanation
Indices: 16112552--16112758 Score: 191
Period size: 53 Copynumber: 3.8 Consensus size: 53
16112542 ATTAGGGTTT
* * * * * *
16112552 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAATTTTCACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGACAATGGTAA-GTTCATAAGGC
* * * * * * * *
16112606 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACGATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGACAATGGT-AAGTTC-ATAAGGC
* * * *
16112661 AAAGATCCCATGTAAGACCATGCCAAGGCATGACAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGACAATGGTAAGTTCATAAGGC
* *
16112714 AAGGATACCACGTAAGACCATGTCAAGACATGGA-AATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACAT-GACAATGGTAAGTT
16112759 TAAAAAAGGA
Statistics
Matches: 123, Mismatches: 27, Indels: 7
0.78 0.17 0.04
Matches are distributed among these distances:
53 43 0.35
54 41 0.33
55 39 0.32
ACGTcount: A:0.38, C:0.18, G:0.24, T:0.20
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGACAATGGTAAGTTCATAAGGC
Found at i:16137189 original size:40 final size:39
Alignment explanation
Indices: 16137158--16137321 Score: 211
Period size: 40 Copynumber: 4.1 Consensus size: 39
16137148 GGACTAAGAT
* *
16137158 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
16137198 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
16137238 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * *
16137278 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
16137318 CCGA
1 CCGA
16137322 GGTCTCGGGT
Statistics
Matches: 115, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
40 112 0.97
41 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:16142694 original size:39 final size:39
Alignment explanation
Indices: 16142530--16142712 Score: 170
Period size: 40 Copynumber: 4.6 Consensus size: 39
16142520 TTGAATGCTG
* * * * * * *
16142530 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTATGTCCCGAAGGCATTGTGC-GAGTTACTAAA
* * * *
16142570 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTATG-TCCCGAAGG-CATTGTGCGAGTTACTAAA
* **
16142610 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTATGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
16142650 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTATGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
16142689 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTATGTCCCGAAGGCATT
16142713 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
39 38 0.31
40 74 0.61
41 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
TCCGGGTTATGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:16142732 original size:79 final size:80
Alignment explanation
Indices: 16142566--16142747 Score: 190
Period size: 79 Copynumber: 2.3 Consensus size: 80
16142556 GCTAAGTGAA
* * * *
16142566 TATATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGG
1 TATATCCGGGTTAAG-TCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGG
** ** *
16142630 CATTCGTGCGAGTTGT
65 CATTCGAACGAGGAGC
* * * * *
16142646 TAAATCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGC
1 TATATCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGC
*
16142710 ATTTGAACGAGGAGC
66 ATTCGAACGAGGAGC
*
16142725 TATATCC-GGTTAAATCCCGAAGG
1 TATATCCGGGTTAAGTCCCGAAGG
16142748 TACGTGATTT
Statistics
Matches: 83, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
78 14 0.17
79 50 0.60
80 19 0.23
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (80 bp):
TATATCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGC
ATTCGAACGAGGAGC
Found at i:16158740 original size:42 final size:43
Alignment explanation
Indices: 16158645--16158803 Score: 146
Period size: 42 Copynumber: 3.7 Consensus size: 43
16158635 AACAGGTACA
* * * * * *
16158645 ATGCCGATGTTCCA-ACATGGTCTTACATGTAAT-TCATTATCA
1 ATGCCTATGTCCCAGACATGGTCTTACACGAAATATCA-AATCG
* * *
16158687 ATGCCTCTGTCCCAGATATGGTCTTACAC-AAA-ATCAGATACG
1 ATGCCTATGTCCCAGACATGGTCTTACACGAAATATCAAAT-CG
*
16158729 ATGCCTATGTCCCAGACATGGTCTTACACGTAAATCTCAAATCG
1 ATGCCTATGTCCCAGACATGGTCTTACACG-AAATATCAAATCG
* * *
16158773 AGGCCTGTGTCCCAGACACGGTCTTACACGA
1 ATGCCTATGTCCCAGACATGGTCTTACACGA
16158804 TATCTCAGAT
Statistics
Matches: 96, Mismatches: 15, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
41 2 0.02
42 44 0.46
43 13 0.14
44 32 0.33
45 5 0.05
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (43 bp):
ATGCCTATGTCCCAGACATGGTCTTACACGAAATATCAAATCG
Found at i:16158796 original size:44 final size:44
Alignment explanation
Indices: 16158689--16158810 Score: 142
Period size: 44 Copynumber: 2.8 Consensus size: 44
16158679 CATTATCAAT
* * * * *
16158689 GCCTCTGTCCCAGATATGGTCTTACAC-AAA-ATCAGATACGAT
1 GCCTATGTCCCAGACATGGTCTTACACGAAATCTCAAATACGAG
16158731 GCCTATGTCCCAGACATGGTCTTACACGTAAATCTCAAAT-CGAG
1 GCCTATGTCCCAGACATGGTCTTACACG-AAATCTCAAATACGAG
* * *
16158775 GCCTGTGTCCCAGACACGGTCTTACACGATATCTCA
1 GCCTATGTCCCAGACATGGTCTTACACGAAATCTCA
16158811 GATCAATGTT
Statistics
Matches: 69, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
42 25 0.36
43 7 0.10
44 32 0.46
45 5 0.07
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (44 bp):
GCCTATGTCCCAGACATGGTCTTACACGAAATCTCAAATACGAG
Found at i:16158796 original size:86 final size:84
Alignment explanation
Indices: 16158645--16158801 Score: 199
Period size: 86 Copynumber: 1.8 Consensus size: 84
16158635 AACAGGTACA
* * * * * *
16158645 ATGCCGATGTTCCAACATGGTCTTACATGTAATTCATTATCAATGCCTCTGTCCCAGATATGGTC
1 ATGCCGATGTCCCAACATGGTCTTACACGTAATTCATAATCAAGGCCTCTGTCCCAGACACGGTC
16158710 TTACACAAAATCAGATACG
66 TTACACAAAATCAGATACG
* * *
16158729 ATGCCTATGTCCCAGACATGGTCTTACACGTAAATCTCA-AATCGAGGCCTGTGTCCCAGACACG
1 ATGCCGATGTCCCA-ACATGGTCTTACACGT-AAT-TCATAATCAAGGCCTCTGTCCCAGACACG
16158793 GTCTTACAC
63 GTCTTACAC
16158802 GATATCTCAG
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
84 12 0.20
85 15 0.25
86 31 0.51
87 3 0.05
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (84 bp):
ATGCCGATGTCCCAACATGGTCTTACACGTAATTCATAATCAAGGCCTCTGTCCCAGACACGGTC
TTACACAAAATCAGATACG
Found at i:16171431 original size:47 final size:47
Alignment explanation
Indices: 16171365--16171837 Score: 759
Period size: 47 Copynumber: 10.1 Consensus size: 47
16171355 GAAATGATAG
**
16171365 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAACAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
16171412 TAAGGCCTAACAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAACAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
16171459 TAAGGCCTAACAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAACAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
16171506 TAAGGCCTAACAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAACAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
16171553 TAAGGCCTAACAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAACAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
16171600 TAAGGCCTAACAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAACAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
** * *
16171647 TAAGGCCTAATGGTCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAACAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
**
16171694 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAACAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
16171741 TAAGGCCTAACGGCCGATGTG-TGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAACAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * *** * * * * *
16171787 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAACAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
16171834 TAAG
1 TAAG
16171838 TCCCGAAGGG
Statistics
Matches: 404, Mismatches: 21, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
46 39 0.10
47 365 0.90
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAACAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:16183584 original size:41 final size:42
Alignment explanation
Indices: 16183496--16183647 Score: 155
Period size: 41 Copynumber: 3.5 Consensus size: 42
16183486 AATGCCAACA
* * *
16183496 TCCCAAACATGGTCTTACATGGAATCACATATCGATGCCACTG
1 TCCCAGACATGGTCTTACA-CGAATCAAATATCGATGCCACTG
*
16183539 TCCCAGACAGGGTCTTACACGAATCAAATA-CGATGCCGA-TG
1 TCCCAGACATGGTCTTACACGAATCAAATATCGATGCC-ACTG
* ** * *
16183580 TCCCAGACATGGTCTTACACGTAATCGTATATATTAATGGCAATG
1 TCCCAGACATGGTCTTACACG-AATC--AAATATCGATGCCACTG
*
16183625 TCCCAGACCTGGTCTTACACGAA
1 TCCCAGACATGGTCTTACACGAA
16183648 AACACATATC
Statistics
Matches: 93, Mismatches: 10, Indels: 11
0.82 0.09 0.10
Matches are distributed among these distances:
41 29 0.31
42 14 0.15
43 17 0.18
44 7 0.08
45 26 0.28
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (42 bp):
TCCCAGACATGGTCTTACACGAATCAAATATCGATGCCACTG
Found at i:16184456 original size:23 final size:23
Alignment explanation
Indices: 16184386--16184456 Score: 60
Period size: 22 Copynumber: 3.2 Consensus size: 23
16184376 GTGTGATGAA
16184386 TGTGATAAGTCCCGAAGGGCATT
1 TGTGATAAGTCCCGAAGGGCATT
* * * *
16184409 TGTG-TCAGT---AAAGTGCATAAA
1 TGTGATAAGTCCCGAAGGGCAT--T
16184430 TGTGATAAGTCCCGAAGGGCATT
1 TGTGATAAGTCCCGAAGGGCATT
16184453 TGTG
1 TGTG
16184457 TCAGTACTAT
Statistics
Matches: 34, Mismatches: 8, Indels: 12
0.63 0.15 0.22
Matches are distributed among these distances:
19 7 0.21
21 4 0.12
22 8 0.24
23 8 0.24
25 7 0.21
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.28
Consensus pattern (23 bp):
TGTGATAAGTCCCGAAGGGCATT
Found at i:16184613 original size:37 final size:37
Alignment explanation
Indices: 16184557--16184635 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
16184547 CCGAGCTCTA
* * * *
16184557 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGAT
*
16184594 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGAT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGAT
16184631 AAGAC
1 AAGAC
16184636 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGAT
Found at i:16186507 original size:51 final size:52
Alignment explanation
Indices: 16186418--16186521 Score: 201
Period size: 51 Copynumber: 2.0 Consensus size: 52
16186408 TGCAATTTTG
16186418 AAAGAGTGTTATGACTATAAATGTGATTTTTGTATGTGGCTATGGAACTGGA
1 AAAGAGTGTTATGACTATAAATGTGATTTTTGTATGTGGCTATGGAACTGGA
16186470 AAAGAGTGTTATGACTAT-AATGTGATTTTTGTATGTGGCTATGGAACTGGA
1 AAAGAGTGTTATGACTATAAATGTGATTTTTGTATGTGGCTATGGAACTGGA
16186521 A
1 A
16186522 GTTGAATGGT
Statistics
Matches: 52, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
51 34 0.65
52 18 0.35
ACGTcount: A:0.31, C:0.06, G:0.27, T:0.37
Consensus pattern (52 bp):
AAAGAGTGTTATGACTATAAATGTGATTTTTGTATGTGGCTATGGAACTGGA
Found at i:16186743 original size:29 final size:29
Alignment explanation
Indices: 16186708--16186781 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
16186698 GTTGTGAGAT
* *
16186708 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
16186737 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
16186766 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
16186782 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:16187217 original size:40 final size:40
Alignment explanation
Indices: 16187094--16187329 Score: 217
Period size: 40 Copynumber: 5.9 Consensus size: 40
16187084 TCGAATGATG
** *
16187094 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* * ** * * *
16187134 TCCGGACTAAGACCCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TATA
*
16187174 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
16187214 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* ** * * *
16187254 TCCGTGCTAAACCCCGAAGAGCATTCATGCTGGTGTTATG
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * * *
16187294 TCCGGGCTAGGTCCCAAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
16187330 CGTGTATTCG
Statistics
Matches: 161, Mismatches: 33, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
40 143 0.89
41 18 0.11
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:16190711 original size:47 final size:47
Alignment explanation
Indices: 16190650--16190856 Score: 387
Period size: 47 Copynumber: 4.4 Consensus size: 47
16190640 CAGCCAAGAC
16190650 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
16190697 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
16190744 AGTGTATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
16190791 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
16190838 AGTGTATATATGTGATAAG
1 AGTGTATATATGTGATAAG
16190857 TCCCGAAGGG
Statistics
Matches: 155, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 155 1.00
ACGTcount: A:0.32, C:0.07, G:0.29, T:0.31
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:16191031 original size:37 final size:37
Alignment explanation
Indices: 16190975--16191053 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
16190965 CCGAGCTCTA
* *
16190975 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
16191012 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
16191049 AAGAC
1 AAGAC
16191054 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:16196005 original size:10 final size:10
Alignment explanation
Indices: 16195990--16196024 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
16195980 ATAGTTACTC
16195990 TTCTCTTCTG
1 TTCTCTTCTG
*
16196000 TTCTCTTCTA
1 TTCTCTTCTG
16196010 TTCTCTTCTG
1 TTCTCTTCTG
16196020 -TCTCT
1 TTCTCT
16196025 CAAATCTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 5 0.22
10 18 0.78
ACGTcount: A:0.03, C:0.31, G:0.06, T:0.60
Consensus pattern (10 bp):
TTCTCTTCTG
Found at i:16199911 original size:40 final size:40
Alignment explanation
Indices: 16199593--16199897 Score: 411
Period size: 40 Copynumber: 7.7 Consensus size: 40
16199583 TTGAATGATG
* * * * *
16199593 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
16199633 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
16199673 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGATTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
16199712 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
16199752 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
** *
16199792 TTTGGGTGAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
16199832 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
16199873 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
16199898 AACGAGTAGC
Statistics
Matches: 239, Mismatches: 21, Indels: 10
0.89 0.08 0.04
Matches are distributed among these distances:
39 34 0.14
40 195 0.82
41 10 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:16216556 original size:41 final size:43
Alignment explanation
Indices: 16216467--16216583 Score: 123
Period size: 41 Copynumber: 2.7 Consensus size: 43
16216457 ATCTCAGATG
*
16216467 TGGTCTTACATGTAATCACATATCGATGCCACTGCCCCAAACA
1 TGGTCTTACATGTAATCAAATATCGATGCCACTGCCCCAAACA
* ** *
16216510 GGGTCTTACATG-AATCAAATA-CGATGCCGA-TGTGCCAGACA
1 TGGTCTTACATGTAATCAAATATCGATGCC-ACTGCCCCAAACA
* *
16216551 TGGTCTTACACGTAACCACAGATATCGATGCCA
1 TGGTCTTACATGTAATCA-A-ATATCGATGCCA
16216584 ACGTCTCAGA
Statistics
Matches: 61, Mismatches: 8, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
41 25 0.41
42 13 0.21
43 12 0.20
44 4 0.07
45 7 0.11
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (43 bp):
TGGTCTTACATGTAATCAAATATCGATGCCACTGCCCCAAACA
Found at i:16223439 original size:23 final size:23
Alignment explanation
Indices: 16223412--16223524 Score: 70
Period size: 23 Copynumber: 4.8 Consensus size: 23
16223402 TACTATTTTT
*
16223412 AGCTCATTGGAGCTTACCGTTTC
1 AGCTCATTAGAGCTTACCGTTTC
* *
16223435 AGCTC-GTATGAGCTTACTG-TTC
1 AGCTCATTA-GAGCTTACCGTTTC
* * *
16223457 ATCTCGA-TAGAGCTTACAGTTTT
1 AGCTC-ATTAGAGCTTACCGTTTC
* *
16223480 AGCTCAATAGAGCTTACTGTTCATC
1 AGCTCATTAGAGCTTACCGTT--TC
**
16223505 AGCTCAGGAGGAGCTTACCG
1 AGCTCATTA-GAGCTTACCG
16223525 GTCATGGATC
Statistics
Matches: 70, Mismatches: 12, Indels: 13
0.74 0.13 0.14
Matches are distributed among these distances:
22 18 0.26
23 35 0.50
25 8 0.11
26 9 0.13
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.32
Consensus pattern (23 bp):
AGCTCATTAGAGCTTACCGTTTC
Found at i:16223462 original size:22 final size:23
Alignment explanation
Indices: 16223421--16223509 Score: 92
Period size: 23 Copynumber: 3.8 Consensus size: 23
16223411 TAGCTCATTG
*
16223421 GAGCTTACCGTTTCAGCTCG-TA
1 GAGCTTACTGTTTCAGCTCGATA
*
16223443 TGAGCTTACTG-TTCATCTCGATA
1 -GAGCTTACTGTTTCAGCTCGATA
* * *
16223466 GAGCTTACAGTTTTAGCTCAATA
1 GAGCTTACTGTTTCAGCTCGATA
16223489 GAGCTTACTGTTCATCAGCTC
1 GAGCTTACTGTT--TCAGCTC
16223510 AGGAGGAGCT
Statistics
Matches: 54, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
22 17 0.31
23 31 0.57
25 6 0.11
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.35
Consensus pattern (23 bp):
GAGCTTACTGTTTCAGCTCGATA
Found at i:16224277 original size:32 final size:32
Alignment explanation
Indices: 16224241--16224319 Score: 122
Period size: 32 Copynumber: 2.5 Consensus size: 32
16224231 ACAGTCTCAA
* *
16224241 TTGGGCCTAGCCCATCTCAGAATCAATATCAG
1 TTGGGCCTAGCCCATATCAGAACCAATATCAG
*
16224273 TTGGGCCTAGCCCATATCAGAACCAGTATCAG
1 TTGGGCCTAGCCCATATCAGAACCAATATCAG
*
16224305 TTGGGCTTAGCCCAT
1 TTGGGCCTAGCCCAT
16224320 TTCAATATCA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 43 1.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (32 bp):
TTGGGCCTAGCCCATATCAGAACCAATATCAG
Found at i:16224291 original size:26 final size:26
Alignment explanation
Indices: 16224262--16224329 Score: 64
Period size: 32 Copynumber: 2.4 Consensus size: 26
16224252 CCATCTCAGA
16224262 ATCAATATCAGTTGGGCCTAGCCCAT
1 ATCAATATCAGTTGGGCCTAGCCCAT
*
16224288 ATCAGAACCAGTATCAGTTGGGCTTAGCCCAT
1 ATC---A--A-TATCAGTTGGGCCTAGCCCAT
*
16224320 TTCAATATCA
1 ATCAATATCA
16224330 AACCAATATG
Statistics
Matches: 34, Mismatches: 2, Indels: 12
0.71 0.04 0.25
Matches are distributed among these distances:
26 8 0.24
27 1 0.03
29 2 0.06
31 1 0.03
32 22 0.65
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (26 bp):
ATCAATATCAGTTGGGCCTAGCCCAT
Found at i:16226736 original size:46 final size:47
Alignment explanation
Indices: 16226669--16226978 Score: 270
Period size: 46 Copynumber: 6.7 Consensus size: 47
16226659 TGTAACCTGC
* *
16226669 CCATAAGTGAACTCGGACTCAACTTAACGAGCTT-GGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTTCGGGCATTCACAT
**
16226715 CCATAAGTGAACTCGGACTCAACTCAACGAGCTT-GGGCATTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTTCGGGCATTCACAT
*
16226761 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTTCG--GGC-A-TTCACAT
* * * *
16226810 -C-TCA-CGAACTCGGACTCAACTCAACGAG-TTCGGACATTCAAAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTTCGGGCATTCACAT
*
16226853 CCATAAGTGAACTCAGACTCAACTCAACGAGC-TCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTTCGG--G-C-A-TTCACAT
* * ** ** * *
16226903 -C-TCA-CGAACTTAGACAGAATTCAACGA-CTTCGGACATTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTTCGGGCATTCACAT
*
16226946 CCATAAGTGAACTCGGACTCAACTCAATGAGCT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCT
16226979 CCGATGCCTA
Statistics
Matches: 214, Mismatches: 29, Indels: 41
0.75 0.10 0.14
Matches are distributed among these distances:
42 4 0.02
43 9 0.04
44 5 0.02
45 6 0.03
46 146 0.68
47 26 0.12
48 5 0.02
49 5 0.02
50 6 0.03
51 2 0.01
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.23
Consensus pattern (47 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTTCGGGCATTCACAT
Found at i:16226935 original size:93 final size:92
Alignment explanation
Indices: 16226723--16227029 Score: 445
Period size: 93 Copynumber: 3.3 Consensus size: 92
16226713 ATCCATAAGT
* * * **
16226723 GAACTCGGACTCAACTCAACGAGCTT-GGGCATTCGTATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTTGGACTCAATTCAACGAG-TTCGGACATTCAAATCCATAAGTGAACTCGGACTCAACTCA
*
16226787 ACGAGTTCGATGCCTAGTTACATCTCAC
65 ACGAGCTCGATGCCTAGTTACATCTCAC
* * *
16226815 GAACTCGGACTCAACTCAACGAGTTCGGACATTCAAATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTTGGACTCAATTCAACGAGTTCGGACATTCAAATCCATAAGTGAACTCGGACTCAACTCAA
16226880 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTC-GATGCCTAGTTACATCTCAC
* ** * *
16226908 GAACTTAGACAGAATTCAACGACTTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTTGGACTCAATTCAACGAGTTCGGACATTCAAATCCATAAGTGAACTCGGACTCAACTCAA
*
16226973 TGAGCTCCGATGCCTAGTTACATCTCAC
66 CGAGCT-CGATGCCTAGTTACATCTCAC
16227001 GAACTTGGACTCAATTCAACGAGTTCGGA
1 GAACTTGGACTCAATTCAACGAGTTCGGA
16227030 ACTTAAATAT
Statistics
Matches: 194, Mismatches: 18, Indels: 5
0.89 0.08 0.02
Matches are distributed among these distances:
91 2 0.01
92 64 0.33
93 127 0.65
94 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (92 bp):
GAACTTGGACTCAATTCAACGAGTTCGGACATTCAAATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGATGCCTAGTTACATCTCAC
Found at i:16232745 original size:15 final size:16
Alignment explanation
Indices: 16232714--16232750 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
16232704 GAATAAAATG
*
16232714 TTGA-ATATGATGTAT
1 TTGATATATGATGAAT
16232729 TTGATATATG-TGAAT
1 TTGATATATGATGAAT
16232744 TTGATAT
1 TTGATAT
16232751 GATACAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 15 0.75
16 5 0.25
ACGTcount: A:0.32, C:0.00, G:0.19, T:0.49
Consensus pattern (16 bp):
TTGATATATGATGAAT
Found at i:16239097 original size:58 final size:58
Alignment explanation
Indices: 16239025--16239138 Score: 210
Period size: 58 Copynumber: 2.0 Consensus size: 58
16239015 CTTGGGTCAC
*
16239025 GTGGTATCCCCATCGGGTATTCGAGTTGACCCGAGCAAAATTTCAGCCATACTTAATT
1 GTGGTATCCCCATCGGGTATTCGAGTTGACCCGAGCAAAATCTCAGCCATACTTAATT
*
16239083 GTGGTATCCGCATCGGGTATTCGAGTTGACCCGAGCAAAATCTCAGCCATACTTAA
1 GTGGTATCCCCATCGGGTATTCGAGTTGACCCGAGCAAAATCTCAGCCATACTTAA
16239139 CTGGAAGCCT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
58 54 1.00
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (58 bp):
GTGGTATCCCCATCGGGTATTCGAGTTGACCCGAGCAAAATCTCAGCCATACTTAATT
Found at i:16239525 original size:52 final size:52
Alignment explanation
Indices: 16239445--16239547 Score: 179
Period size: 52 Copynumber: 2.0 Consensus size: 52
16239435 CCTATGCGTC
* *
16239445 GAGACAATTGAAGCCACACGAGAGAAATTATCCGACCCATGATCTCGAACTT
1 GAGACAATTAAAGCCACACGAGAAAAATTATCCGACCCATGATCTCGAACTT
*
16239497 GAGACAATTAAAGCCACATGAGAAAAATTATCCGACCCATGATCTCGAACT
1 GAGACAATTAAAGCCACACGAGAAAAATTATCCGACCCATGATCTCGAACT
16239548 AGCTGCCATC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 48 1.00
ACGTcount: A:0.39, C:0.24, G:0.17, T:0.19
Consensus pattern (52 bp):
GAGACAATTAAAGCCACACGAGAAAAATTATCCGACCCATGATCTCGAACTT
Found at i:16249448 original size:30 final size:30
Alignment explanation
Indices: 16249404--16249492 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
16249394 CAAAGATAAC
16249404 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
16249433 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * *
16249463 AAGAGATCCA-AGATAAAGAAACCCAAGATA
1 AAGAAAACCAGA-ATAAAGAAATCCAAGATA
16249493 TGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 10 0.20
30 38 0.76
31 2 0.04
ACGTcount: A:0.58, C:0.16, G:0.16, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:16249452 original size:15 final size:15
Alignment explanation
Indices: 16249404--16249483 Score: 85
Period size: 15 Copynumber: 5.4 Consensus size: 15
16249394 CAAAGATAAC
*
16249404 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
16249418 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
16249433 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
16249448 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
*
16249463 AAGAGATCCA-AGATA
1 AAGAAATCCAGA-ATA
16249478 AAGAAA
1 AAGAAA
16249484 CCCAAGATAT
Statistics
Matches: 55, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
14 10 0.18
15 44 0.80
16 1 0.02
ACGTcount: A:0.60, C:0.14, G:0.16, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:16249488 original size:15 final size:15
Alignment explanation
Indices: 16249415--16249492 Score: 88
Period size: 15 Copynumber: 5.2 Consensus size: 15
16249405 AGAAAACCGA
16249415 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
16249430 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
16249444 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
*
16249459 AATAAAGAGATCCAAG
1 -ATAAAGAAATCCAAG
*
16249475 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
16249490 ATA
1 ATA
16249493 TGATACTATG
Statistics
Matches: 54, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
14 4 0.07
15 46 0.85
16 4 0.07
ACGTcount: A:0.58, C:0.15, G:0.15, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:16253862 original size:20 final size:21
Alignment explanation
Indices: 16253837--16253876 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
16253827 CTCTAAAAAC
*
16253837 AGGGC-ACACGCTCGTGTGGA
1 AGGGCAACACGCTCATGTGGA
*
16253857 AGGGCAACATGCTCATGTGG
1 AGGGCAACACGCTCATGTGG
16253877 TTCACTATGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.23, C:0.23, G:0.38, T:0.17
Consensus pattern (21 bp):
AGGGCAACACGCTCATGTGGA
Found at i:16255204 original size:46 final size:46
Alignment explanation
Indices: 16255152--16255317 Score: 156
Period size: 46 Copynumber: 3.6 Consensus size: 46
16255142 TAGCCTATAT
*
16255152 ATGTCCCAGACATGTCTTACACTAGCT-TACATCTCGAGGCTGATGC
1 ATGTCCCAGACATGTCTTACACTAGCTCT-CATCTCGAGGCAGATGC
* * * * * * *
16255198 ATGTCCCAAACATATCTTACACTAGATCTCGTCTCAATGAAGATGCC
1 ATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAGGCAGATG-C
* * * * * *
16255245 AAGTCCCAGACATGATCTTACATTGGCTCTCATAAT-GTGGCCGATGC
1 ATGTCCCAGACATG-TCTTACACTAGCTCTCAT-CTCGAGGCAGATGC
16255292 ATGTCCCAGACATGTCTTACACTAGC
1 ATGTCCCAGACATGTCTTACACTAGC
16255318 ACACAAATAA
Statistics
Matches: 92, Mismatches: 24, Indels: 8
0.74 0.19 0.06
Matches are distributed among these distances:
46 45 0.49
47 27 0.29
48 19 0.21
49 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (46 bp):
ATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAGGCAGATGC
Found at i:16257244 original size:43 final size:43
Alignment explanation
Indices: 16257184--16257352 Score: 166
Period size: 43 Copynumber: 4.0 Consensus size: 43
16257174 TAAGCTTGTA
* * *
16257184 CAATGCC-ATATCCCAGATATGGTCTTACATGTGATCACATAT
1 CAATGCCAATGTCCCAGATATGGTCTTACACGTAATCACATAT
* * * * *
16257226 CAATGCCACTGTCCCAGATAGGGAT-TTATACG-AATTCATATAA
1 CAATGCCAATGTCCCAGATATGG-TCTTACACGTAA-TCACATAT
*
16257269 CGATGCCAATGTCCCAGATATGGTCTTACACGTAATCACA-AT
1 CAATGCCAATGTCCCAGATATGGTCTTACACGTAATCACATAT
* * * *
16257311 ACAATGCTAATGTCCTAGACATGGTCTTACATGTAATCACAT
1 -CAATGCCAATGTCCCAGATATGGTCTTACACGTAATCACAT
16257353 CTCGGTAATC
Statistics
Matches: 101, Mismatches: 19, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
42 10 0.10
43 88 0.87
44 3 0.03
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (43 bp):
CAATGCCAATGTCCCAGATATGGTCTTACACGTAATCACATAT
Found at i:16262764 original size:17 final size:18
Alignment explanation
Indices: 16262742--16262775 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
16262732 CACATTGAAG
16262742 TGTTTT-ATCGAAAACCT
1 TGTTTTCATCGAAAACCT
*
16262759 TGTTTTCATTGAAAACC
1 TGTTTTCATCGAAAACC
16262776 CTTCTTTGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (18 bp):
TGTTTTCATCGAAAACCT
Found at i:16265363 original size:56 final size:56
Alignment explanation
Indices: 16265277--16266124 Score: 1696
Period size: 56 Copynumber: 15.1 Consensus size: 56
16265267 AAAAGGGATG
16265277 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
16265333 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
16265389 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
16265445 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
16265501 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
16265557 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
16265613 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
16265669 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
16265725 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
16265781 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
16265837 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
16265893 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
16265949 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
16266005 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
16266061 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
16266117 ATGGGCAA
1 ATGGGCAA
16266125 TTAACTAATA
Statistics
Matches: 792, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 792 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:16267344 original size:40 final size:40
Alignment explanation
Indices: 16266985--16267330 Score: 554
Period size: 40 Copynumber: 8.7 Consensus size: 40
16266975 TCGAATGATG
* * * * *
16266985 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* **
16267025 TTCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
16267065 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
16267105 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
16267145 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
16267185 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
16267225 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
16267265 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
16267306 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
16267331 AACGAGTAGC
Statistics
Matches: 291, Mismatches: 11, Indels: 8
0.94 0.04 0.03
Matches are distributed among these distances:
39 1 0.00
40 280 0.96
41 10 0.03
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:16274837 original size:40 final size:39
Alignment explanation
Indices: 16274747--16274970 Score: 245
Period size: 40 Copynumber: 5.6 Consensus size: 39
16274737 TCGAATGATG
* * * *
16274747 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
16274787 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
16274827 TCTGGGCTAAGCCCGAAGGCATTGGTGCGAGTTTCTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
*
16274866 TCCGGGTTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
*
16274905 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
16274946 -CCGGGCTATGTCCCAAAGGCATTTG
1 TCCGGGCTAAG-CCCGAAGGCATTTG
16274971 AACGAGTAGC
Statistics
Matches: 158, Mismatches: 23, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
39 69 0.44
40 80 0.51
41 9 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:16274936 original size:79 final size:80
Alignment explanation
Indices: 16274747--16274970 Score: 258
Period size: 79 Copynumber: 2.8 Consensus size: 80
16274737 TCGAATGATG
* * * * * *
16274747 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGCTAAGACCCGAAGGCATT
*
16274811 TGTGCGAGATACTAAT
65 TGTGCGAGATACTAAA
* * * *
16274827 TCTGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTTCTAAATCCGGGTTAAG-CCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGACCCGAAGGCATTT
*
16274890 GTGCGAGTTACTAAA
66 GTGCGAGATACTAAA
* * * *
16274905 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCAAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGACCCGAAGGCATT
16274969 TG
65 TG
16274971 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
78 34 0.28
79 56 0.46
80 31 0.26
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGACCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:16275001 original size:79 final size:79
Alignment explanation
Indices: 16274803--16275003 Score: 185
Period size: 79 Copynumber: 2.6 Consensus size: 79
16274793 CTAAGATCCG
** * * * * * *
16274803 AAGGCATTTGTGCGAGATACTAATTCTGGGCT-AAGCCCGAAGGCATTGGTGCGAGTTTCTAAAT
1 AAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTGGTGCGAGTTACTAAAT
* *
16274867 CCGGGTTAAGCCCG
66 CCGGGCTAAGCCCA
** * *
16274881 AAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 AAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTGGTGCGAGTTACTA-AA
*
16274946 -CCGGGCTATGTCCCA
65 TCCGGGCTAAG-CCCA
* * *
16274961 AAGGCATTTGAACGAG-TAGCTATAT-CTGGTTAAATTCCGAAGG
1 AAGGCATTTGAACGAGTTA-CTAAATCCGGGTTAAATCCCGAAGG
16275004 TACGTGATTT
Statistics
Matches: 102, Mismatches: 17, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
78 28 0.27
79 50 0.49
80 24 0.24
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.27
Consensus pattern (79 bp):
AAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTGGTGCGAGTTACTAAAT
CCGGGCTAAGCCCA
Found at i:16276677 original size:30 final size:30
Alignment explanation
Indices: 16276643--16276702 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
16276633 CTTTAATACG
16276643 AACTTTTAAAAAATTACTA-TTTTGCCCCTA
1 AACTTTTAAAAAATTAC-ACTTTTGCCCCTA
** *
16276673 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTTAAAAAATTACACTTTTGCCCCTA
16276703 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 1 0.04
30 25 0.96
ACGTcount: A:0.32, C:0.23, G:0.05, T:0.40
Consensus pattern (30 bp):
AACTTTTAAAAAATTACACTTTTGCCCCTA
Found at i:16278181 original size:28 final size:28
Alignment explanation
Indices: 16278139--16278241 Score: 170
Period size: 28 Copynumber: 3.7 Consensus size: 28
16278129 TGGCCCCTTT
*
16278139 AGGCCCAATCTCATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
16278167 AGGCCCAATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* *
16278195 AGGCCCAATCACTTTCATATGGCCCGTC
1 AGGCCCAATCACATTCATATGGCCCATC
*
16278223 GGGCCCAATCACATTCATA
1 AGGCCCAATCACATTCATA
16278242 GTCATGCAAT
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 70 1.00
ACGTcount: A:0.26, C:0.35, G:0.16, T:0.23
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:16279746 original size:5 final size:5
Alignment explanation
Indices: 16279736--16279762 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
16279726 CATTCGCTCT
16279736 TTTTA TTTTA TTTTA TTTTA TTTTA TT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TT
16279763 AGCACGGGCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:16287306 original size:28 final size:28
Alignment explanation
Indices: 16287287--16287353 Score: 107
Period size: 28 Copynumber: 2.4 Consensus size: 28
16287277 ATTTCGCATG
*
16287287 CTAAGTGCCATTCTCAATATCTCACACA
1 CTAAGTGCCATTCTCAATATTTCACACA
* *
16287315 CCAAGTGTCATTCTCAATATTTCACACA
1 CTAAGTGCCATTCTCAATATTTCACACA
16287343 CTAAGTGCCAT
1 CTAAGTGCCAT
16287354 ATTTGATGTC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.31, C:0.30, G:0.09, T:0.30
Consensus pattern (28 bp):
CTAAGTGCCATTCTCAATATTTCACACA
Found at i:16287468 original size:41 final size:40
Alignment explanation
Indices: 16287389--16287470 Score: 96
Period size: 41 Copynumber: 2.0 Consensus size: 40
16287379 TGTACATAGT
* *
16287389 CGAAGCTATCTCAAATCGCACACTTAGTGCCAATTTTAGC
1 CGAAGCTATCTCAAATCGCACACTAAGTACCAATTTTAGC
*
16287429 CGAAGCTATAC-CGAATCTGCACACTAAGTACC-ATATTTAGC
1 CGAAGCTAT-CTCAAATC-GCACACTAAGTACCAAT-TTTAGC
16287470 C
1 C
16287471 AATATATCAT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
40 16 0.44
41 20 0.56
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.26
Consensus pattern (40 bp):
CGAAGCTATCTCAAATCGCACACTAAGTACCAATTTTAGC
Found at i:16294167 original size:28 final size:28
Alignment explanation
Indices: 16294089--16294167 Score: 106
Period size: 28 Copynumber: 2.8 Consensus size: 28
16294079 GAATCATTCG
* *
16294089 ATATTTCGCGCACTAAGTGT-CATTCTTA
1 ATATTTCGCACACTAAGT-TCCATTCTCA
* *
16294117 ATATCTCGCACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTTCCATTCTCA
16294145 ATATTTCGCACACTAAGTTCCAT
1 ATATTTCGCACACTAAGTTCCAT
16294168 ATTTGATGTC
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.28, C:0.27, G:0.11, T:0.34
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTTCCATTCTCA
Found at i:16311496 original size:39 final size:40
Alignment explanation
Indices: 16311396--16311580 Score: 202
Period size: 40 Copynumber: 4.7 Consensus size: 40
16311386 TCGAATGATG
* *
16311396 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
16311435 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
16311476 TTCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
16311515 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
16311554 AACCGGGCTATA-TCCTGAAGGCATTTG
1 -TCCGGGCTA-AGTCCCGAAGGCATTTG
16311581 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 14, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 78 0.63
41 11 0.09
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:16311532 original size:79 final size:80
Alignment explanation
Indices: 16311398--16311552 Score: 217
Period size: 79 Copynumber: 1.9 Consensus size: 80
16311388 GAATGATGTC
* *
16311398 CGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTGT
16311463 GCGAGTTACTAATTT
66 GCGAGTTACTAATTT
* * **
16311478 CGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTT
1 CGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATTT
16311540 GTGCGAGTTACTA
64 GTGCGAGTTACTA
16311553 TAACCGGGCT
Statistics
Matches: 67, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
78 1 0.01
79 51 0.76
80 15 0.22
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTGT
GCGAGTTACTAATTT
Found at i:16311561 original size:79 final size:80
Alignment explanation
Indices: 16311397--16311578 Score: 210
Period size: 79 Copynumber: 2.3 Consensus size: 80
16311387 CGAATGATGT
* *
16311397 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAG-CCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
*
16311461 GTGCGAGTTACTAATT
65 GTGCGAGTTACTAATA
* * * **
16311477 TCGGGCTAAGCCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTT
1 CCGGGCTAAGCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATTT
16311540 GTGCGAGTTACT-ATAA
65 GTGCGAGTTACTAAT-A
* *
16311556 CCGGGCTATATCCTGAAGGCATT
1 CCGGGCTA-AGCCCGAAGGCATT
16311579 TGAACGAGTA
Statistics
Matches: 87, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
78 3 0.03
79 57 0.66
80 27 0.31
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
TGCGAGTTACTAATA
Found at i:16311602 original size:79 final size:77
Alignment explanation
Indices: 16311430--16311613 Score: 192
Period size: 79 Copynumber: 2.3 Consensus size: 77
16311420 GTGCTAAGTG
* **
16311430 ACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTTCGGGCTAAGCCCGAAGG
1 ACTATATCCGG-TTAAG-TCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGG
**
16311495 CATTGGTGCGAGTT
64 CATTGGAACGAGTT
* * *
16311509 ACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATATCCTGAA
1 ACTATATCC-GGTTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTA-AGCCCGAA
*
16311573 GGCATTTGAACGAG-T
62 GGCATTGGAACGAGTT
*
16311588 AGCTATATCCGGTTAAATTCCGAAGG
1 A-CTATATCCGGTT-AAGTCCGAAGG
16311614 TACGTGATTC
Statistics
Matches: 88, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
78 3 0.03
79 56 0.64
80 29 0.33
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (77 bp):
ACTATATCCGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCA
TTGGAACGAGTT
Found at i:16317150 original size:40 final size:40
Alignment explanation
Indices: 16317113--16317297 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
16317103 GCTACTCGTT
*
16317113 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
16317153 CAAATGCCTTCGAGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
16317193 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
16317232 CAAATGCATTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
16317273 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
16317298 CATCATTCAA
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 76 0.62
41 13 0.11
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:16317224 original size:79 final size:82
Alignment explanation
Indices: 16317113--16317297 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
16317103 GCTACTCGTT
* * *
16317113 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGAGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCATTCG-GATCTTAACCC
* *
16317176 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
16317193 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCATTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCATTCGGATCTTAACCCG
* *
16317256 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
16317273 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
16317298 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 2 0.02
79 55 0.60
80 34 0.37
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCATTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:16317757 original size:48 final size:48
Alignment explanation
Indices: 16317686--16317779 Score: 179
Period size: 48 Copynumber: 2.0 Consensus size: 48
16317676 ACATACATAT
*
16317686 GAAATCATGAATCAACTCAACATATTAACCCACACTTCTTTTTAGCTG
1 GAAATCATGAATCAACTCAACATATTAACCCACACTTCCTTTTAGCTG
16317734 GAAATCATGAATCAACTCAACATATTAACCCACACTTCCTTTTAGC
1 GAAATCATGAATCAACTCAACATATTAACCCACACTTCCTTTTAGC
16317780 CGATTGTCTA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.30
Consensus pattern (48 bp):
GAAATCATGAATCAACTCAACATATTAACCCACACTTCCTTTTAGCTG
Found at i:16325478 original size:40 final size:39
Alignment explanation
Indices: 16325441--16325532 Score: 132
Period size: 39 Copynumber: 2.3 Consensus size: 39
16325431 GCTACTCGTT
*
16325441 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CATAGCCCGGAAT-TAGTAACTCGCA
* *
16325481 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
16325520 CAAATGCCTTCGG
1 CAAATGCCTTCGG
16325533 ATCTTAGTCC
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
39 33 0.69
40 15 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
Found at i:16325512 original size:39 final size:40
Alignment explanation
Indices: 16325422--16325585 Score: 176
Period size: 40 Copynumber: 4.1 Consensus size: 40
16325412 CGGAATTTAA
** *
16325422 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
16325462 CCGGTTATAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
16325501 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
16325541 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
16325581 CCGGA
1 CCGGA
16325586 CATCATTCAA
Statistics
Matches: 105, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
38 3 0.03
39 32 0.30
40 58 0.55
41 12 0.11
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:16331095 original size:40 final size:40
Alignment explanation
Indices: 16331005--16331426 Score: 554
Period size: 40 Copynumber: 10.7 Consensus size: 40
16330995 TCGAATGATG
* *
16331005 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTA-AT
* *
16331046 T-CGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAAT
* *
16331085 TCCGGGCTAAG-CCCGAAGGCATTGGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAT
* *
16331124 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAT
* *
16331164 TCCGGGCTAAG-CCCGAAGGCATTGGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAT
* *
16331203 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAT
* *
16331243 TCCGGGCTAAG-CCCGAAGGCATTGGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAT
* *
16331282 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAT
* *
16331322 TCCGGGCTAAG-CCCGAAGGCATTGGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAT
* *
16331361 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAT
* *
16331400 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
16331427 AATGAGTAGC
Statistics
Matches: 333, Mismatches: 39, Indels: 19
0.85 0.10 0.05
Matches are distributed among these distances:
39 143 0.43
40 181 0.54
41 9 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAT
Found at i:16331144 original size:79 final size:79
Alignment explanation
Indices: 16331005--16331424 Score: 693
Period size: 79 Copynumber: 5.3 Consensus size: 79
16330995 TCGAATGATG
* * * * * **
16331005 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATTCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTGGTGC-AAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
16331068 TTGTGCGAGTTACTAAT
63 TTGTGCGAGTTACTAAT
16331085 TCCGGGCTAAGCCCGAAGGCATTGGTGCAAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTGGTGCAAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
16331150 TGCGAGTTACTAAT
66 TGCGAGTTACTAAT
16331164 TCCGGGCTAAGCCCGAAGGCATTGGTGCAAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTGGTGCAAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
16331229 TGCGAGTTACTAAT
66 TGCGAGTTACTAAT
16331243 TCCGGGCTAAGCCCGAAGGCATTGGTGCAAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTGGTGCAAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
16331308 TGCGAGTTACTAAT
66 TGCGAGTTACTAAT
16331322 TCCGGGCTAAGCCCGAAGGCATTGGTGCAAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTGGTGCAAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
16331387 TGCGAGTTACT-AT
66 TGCGAGTTACTAAT
* *
16331400 AACCGGGCTATGTCCCGAAGGCATT
1 -TCCGGGCTAAG-CCCGAAGGCATT
16331425 TGAATGAGTA
Statistics
Matches: 327, Mismatches: 9, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
78 3 0.01
79 295 0.90
80 29 0.09
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTGGTGCAAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
TGCGAGTTACTAAT
Found at i:16337477 original size:46 final size:46
Alignment explanation
Indices: 16337364--16337535 Score: 161
Period size: 46 Copynumber: 3.7 Consensus size: 46
16337354 CCAACAAGCT
* * * *
16337364 GATGCCATGTCCCAGACAGGTCTTACACTAGCT-T-GTATATCTCGAGGCT
1 GATG-CATGTCCCAGACATGTCTTACACTAGCTCTCATA-ATAT---GGCC
* **
16337413 GATGCATGTCCCAGACATGTCTTACAGTAGCTCTCATCTTAAT-GCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAAT-ATGGCC
* * * * *
16337459 GATGCATGTCCCAGACATGTCTTACATTGGCTTTCATAATGTGGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATATGGCC
16337505 GATGCATGTCCCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
16337536 ACACATATCA
Statistics
Matches: 103, Mismatches: 16, Indels: 11
0.79 0.12 0.08
Matches are distributed among these distances:
45 1 0.01
46 68 0.66
48 26 0.25
49 6 0.06
50 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.30
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATATGGCC
Found at i:16337521 original size:92 final size:95
Alignment explanation
Indices: 16337326--16337535 Score: 256
Period size: 92 Copynumber: 2.3 Consensus size: 95
16337316 GTGTCAACGC
* * * * *
16337326 CATGTCCCAGACAGGTCTTACACT-GCACCCAAC--AA-GCTGATGCCATGTCCCAGACAGGTCT
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTTAATGCCGATGCCATGTCCCAGACAGGTCT
*
16337387 TACACTAGCTTGTATATCTCGAGGCTGATG
66 TACACTAGCTTGTATATATCGAGGCTGATG
* *
16337417 CATGTCCCAGACATGTCTTACAGTAGCTCTCATCTTAATGCCGATG-CATGTCCCAGACATGTCT
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTTAATGCCGATGCCATGTCCCAGACAGGTCT
* * *
16337481 TACATTGGCTT-TCATA-AT-GTGGCTGATG
66 TACACTAGCTTGT-ATATATCGAGGCTGATG
16337509 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
16337536 ACACATATCA
Statistics
Matches: 102, Mismatches: 12, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
91 22 0.22
92 41 0.40
93 2 0.02
94 31 0.30
95 6 0.06
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (95 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATCTTAATGCCGATGCCATGTCCCAGACAGGTCT
TACACTAGCTTGTATATATCGAGGCTGATG
Found at i:16337708 original size:34 final size:34
Alignment explanation
Indices: 16337665--16337735 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
16337655 TGCAATATCA
16337665 ATTCAATGACAAATCATAACAATATAGTTTCATT
1 ATTCAATGACAAATCATAACAATATAGTTTCATT
16337699 ATTCAATGACAAATCATAACAATATAGTTTCATT
1 ATTCAATGACAAATCATAACAATATAGTTTCATT
16337733 ATT
1 ATT
16337736 AACATATAAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.44, C:0.14, G:0.06, T:0.37
Consensus pattern (34 bp):
ATTCAATGACAAATCATAACAATATAGTTTCATT
Found at i:16348828 original size:27 final size:26
Alignment explanation
Indices: 16348740--16348838 Score: 101
Period size: 27 Copynumber: 3.7 Consensus size: 26
16348730 TGATCTTCTA
* *
16348740 TGCCACAAATATCTGTTTCTGATGGCTC
1 TGCCAC-AATATCTG-TTCTGGTTGCTC
*
16348768 TACCACAAATATCTGTTCTGGTTGCTC
1 TGCCAC-AATATCTGTTCTGGTTGCTC
*
16348795 TGCCACAATATCTGTATCTGG-TGACTT
1 TGCCACAATATCTGT-TCTGGTTG-CTC
*
16348822 TGTCACAATATCTGTTC
1 TGCCACAATATCTGTTC
16348839 CGGCAGCCAT
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
26 13 0.21
27 36 0.57
28 14 0.22
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.37
Consensus pattern (26 bp):
TGCCACAATATCTGTTCTGGTTGCTC
Found at i:16362272 original size:39 final size:40
Alignment explanation
Indices: 16362218--16362394 Score: 245
Period size: 40 Copynumber: 4.5 Consensus size: 40
16362208 AAACCAAGTA
* * * *
16362218 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
16362257 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
16362297 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
16362337 CCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
16362376 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
16362395 TTATCATCCG
Statistics
Matches: 126, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
38 1 0.01
39 48 0.38
40 77 0.61
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:16362371 original size:79 final size:80
Alignment explanation
Indices: 16362218--16362394 Score: 245
Period size: 79 Copynumber: 2.2 Consensus size: 80
16362208 AAACCAAGTA
* * * * *
16362218 CCTTCGGAATTTAG-CCGGATATAGCTACTTGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
16362282 TAACTCGCACAAATG
66 TAACTAGCACAAATG
16362297 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGA-ATT
1 CCTTCGGGACTTAGCCCGGATATAGCT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-T
*
16362359 AGTCACTAGCACAAATG
64 AGTAACTAGCACAAATG
16362376 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
16362395 TTATCATCCG
Statistics
Matches: 88, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
78 1 0.01
79 58 0.66
80 29 0.33
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TAACTAGCACAAATG
Found at i:16366113 original size:27 final size:26
Alignment explanation
Indices: 16366057--16366113 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
16366047 CAACCTTAAC
* *
16366057 CCTAGGGGTATATCAGTAATTTTACT
1 CCTAGGGGTAAATCAGTAATTTTACA
* *
16366083 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTACA
16366110 CCTA
1 CCTA
16366114 TAAAGGTGTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTACA
Found at i:16368953 original size:299 final size:299
Alignment explanation
Indices: 16368127--16369305 Score: 1837
Period size: 299 Copynumber: 3.9 Consensus size: 299
16368117 CGTAAATATT
* * ** * * * *
16368127 TAAAATATTTAC-GAAACTAATATATAGGTGATTTGAAGTTGGTTCAAAAAAATTTAGTGTTTGG
1 TAAAATATGTACAG-AACTGATATATAGGTGAACTAAAATTGATTCGAAAAAATTTAGTGTTTGG
* * * * * **
16368191 ATGATTAATTATGGAAAAATGACTAAATTGTAAAAAATTGTAAAAATTAATCAGTATTGATTTTT
65 ATGATTAATTATGAAAAAAGGACTAAATCG-AAAAAACTATAAAAATTAATCAAAATTGATTTTT
* * * *
16368256 GGTAACTAAGTGGCTTAATTAATAAGTGATTAAGGTTCAAATTGGTAATTATACCATAATTCTAT
129 AGTAACTAAATGGCTTAAGTAATAAGTGATTAAGGTTCAAATTGGTAATTATGCCATAATTCTAT
* *
16368321 AATGGTGGACGGGTGGACAGTTGGCGTGGTTTTCTAACATTAAATAATTTATTTTTAATTAAATA
194 AATGGTGGATGGGTGGACAGTTGGTGTGGTTTTCTAACATTAAATAATTTATTTTTAATTAAATA
* * *
16368386 ATTAAAATGAAAATGGATAAACCGAG-CCTGTAAATATTTAA
259 ATTAAAATGAAAATGGTTAAACCGAGTCC-ATAAGTATTTAA
* * * * * *
16368427 TAAAATATTTACTGAACTGATATATAGGTGAAGTGAAGTT-AGCTC-AAAAAAGTTTAGTGTTTG
1 TAAAATATGTACAGAACTGATATATAGGTGAACTAAAATTGA-TTCGAAAAAA-TTTAGTGTTTG
* * * * * * *
16368490 GATGATTCATAATGGAAAAAAAGGATTAATTC-ATAAAAACTGTAAAAATTAATCAATATAGATT
64 GATGATTAATTAT-G-AAAAAAGGACTAAATCGA-AAAAACTATAAAAATTAATCAAAATTGATT
* * * *
16368554 TTTAGTAACTAAACGGCTTAATTAATAAGTGATTAAGATTCAAATTGATAATTATGCCATAATTC
126 TTTAGTAACTAAATGGCTTAAGTAATAAGTGATTAAGGTTCAAATTGGTAATTATGCCATAATTC
*
16368619 TATAATGGTGGATGGGTGGACAGTTGGTATGGTTTTCTAACATTAAATAATTTATTTTTAATTAA
191 TATAATGGTGGATGGGTGGACAGTTGGTGTGGTTTTCTAACATTAAATAATTTATTTTTAATTAA
16368684 ATAATTAAAATGAAAATGGTTAAACCGAGTCCATAAGTATTTAA
256 ATAATTAAAATGAAAATGGTTAAACCGAGTCCATAAGTATTTAA
16368728 TAAAATATGTACAGAACTGATATATAGGTGAACTAAAATTGATTCGAAAAAATTTAGTGTTTGGA
1 TAAAATATGTACAGAACTGATATATAGGTGAACTAAAATTGATTCGAAAAAATTTAGTGTTTGGA
16368793 TGATTAATTATGAAAAAAGGACTAAATCGAAAAAACTATAAAAATTAATCAAAATTGATTTTTAG
66 TGATTAATTATGAAAAAAGGACTAAATCGAAAAAACTATAAAAATTAATCAAAATTGATTTTTAG
16368858 TAACTAAATGGCTTAAGTAATAAGTGATTAAGGTTCAAATTGGTAATTATGCCATAATTCTATAA
131 TAACTAAATGGCTTAAGTAATAAGTGATTAAGGTTCAAATTGGTAATTATGCCATAATTCTATAA
**
16368923 TGGTGGATGGGTGGATGGTTGGTGTGGTTTTCTAACATTAAATAATTTATTTTTAATTAAATAAT
196 TGGTGGATGGGTGGACAGTTGGTGTGGTTTTCTAACATTAAATAATTTATTTTTAATTAAATAAT
16368988 TAAAATGAAAATGGTTAAACCGAGTCCATAAGTATTTAA
261 TAAAATGAAAATGGTTAAACCGAGTCCATAAGTATTTAA
16369027 TAAAATATGTACAGAACTGATATATAGGTGAACTAAAATTGATTCGAAAAAATTTAGTGTTTGGA
1 TAAAATATGTACAGAACTGATATATAGGTGAACTAAAATTGATTCGAAAAAATTTAGTGTTTGGA
16369092 TGATTAATTATGAAAAAAGGACTAAATCGAAAAAACTATAAAAATTAATCAAAATTGATTTTTAG
66 TGATTAATTATGAAAAAAGGACTAAATCGAAAAAACTATAAAAATTAATCAAAATTGATTTTTAG
16369157 TAACTAAATGGCTTAAGTAATAAGTGATTAAGGTTCAAATTGGTAATTATGCCATAATTCTATAA
131 TAACTAAATGGCTTAAGTAATAAGTGATTAAGGTTCAAATTGGTAATTATGCCATAATTCTATAA
**
16369222 TGGTGGATGGGTGGATGGTTGGTGTGGTTTTCTAACATTAAATAATTTATTTTTAATTAAATAAT
196 TGGTGGATGGGTGGACAGTTGGTGTGGTTTTCTAACATTAAATAATTTATTTTTAATTAAATAAT
16369287 TAAAATGAAAATGGTTAAA
261 TAAAATGAAAATGGTTAAA
16369306 ACATAAAATA
Statistics
Matches: 822, Mismatches: 47, Indels: 21
0.92 0.05 0.02
Matches are distributed among these distances:
299 493 0.60
300 62 0.08
301 247 0.30
302 20 0.02
ACGTcount: A:0.41, C:0.07, G:0.17, T:0.35
Consensus pattern (299 bp):
TAAAATATGTACAGAACTGATATATAGGTGAACTAAAATTGATTCGAAAAAATTTAGTGTTTGGA
TGATTAATTATGAAAAAAGGACTAAATCGAAAAAACTATAAAAATTAATCAAAATTGATTTTTAG
TAACTAAATGGCTTAAGTAATAAGTGATTAAGGTTCAAATTGGTAATTATGCCATAATTCTATAA
TGGTGGATGGGTGGACAGTTGGTGTGGTTTTCTAACATTAAATAATTTATTTTTAATTAAATAAT
TAAAATGAAAATGGTTAAACCGAGTCCATAAGTATTTAA
Found at i:16372132 original size:24 final size:24
Alignment explanation
Indices: 16372105--16372188 Score: 98
Period size: 23 Copynumber: 3.5 Consensus size: 24
16372095 TCAACTCGTA
*
16372105 AGAGCTTACTGTTTTCAGCTCGAT
1 AGAGCTTACTGTTTTCAGCTCAAT
*
16372129 AGAGCTTACCG-TTTCAGCTCAAT
1 AGAGCTTACTGTTTTCAGCTCAAT
* **
16372152 AGAGCTTACTGTTCATCAGCTCAGG
1 AGAGCTTACTGTT-TTCAGCTCAAT
16372177 AGAAGCTTACTG
1 AG-AGCTTACTG
16372189 ATCATGGCTC
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
23 21 0.41
24 11 0.22
25 10 0.20
26 9 0.18
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (24 bp):
AGAGCTTACTGTTTTCAGCTCAAT
Found at i:16372147 original size:23 final size:23
Alignment explanation
Indices: 16372070--16372160 Score: 85
Period size: 23 Copynumber: 3.7 Consensus size: 23
16372060 GGACTCACCA
16372070 CAGCTCGTATGAGCTTACCGATATAT
1 CAGCTCGTA-GAGCTTACCGAT-T-T
* * *
16372096 CAACTCGTAAGAGCTTACTGTTTT
1 CAGCTCGT-AGAGCTTACCGATTT
16372120 CAGCTCGATAGAGCTTACCG-TTT
1 CAGCTCG-TAGAGCTTACCGATTT
*
16372143 CAGCTCAATAGAGCTTAC
1 CAGCTC-GTAGAGCTTAC
16372161 TGTTCATCAG
Statistics
Matches: 56, Mismatches: 6, Indels: 9
0.79 0.08 0.13
Matches are distributed among these distances:
23 19 0.34
24 17 0.30
25 2 0.04
26 17 0.30
27 1 0.02
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (23 bp):
CAGCTCGTAGAGCTTACCGATTT
Found at i:16372385 original size:15 final size:16
Alignment explanation
Indices: 16372354--16372390 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
16372344 AAAGGAAATG
*
16372354 TTGA-ATATGATGTAT
1 TTGATATATGATGAAT
16372369 TTGATATATG-TGAAT
1 TTGATATATGATGAAT
16372384 TTGATAT
1 TTGATAT
16372391 GATACAATGC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 15 0.75
16 5 0.25
ACGTcount: A:0.32, C:0.00, G:0.19, T:0.49
Consensus pattern (16 bp):
TTGATATATGATGAAT
Found at i:16375491 original size:48 final size:47
Alignment explanation
Indices: 16375406--16375630 Score: 164
Period size: 48 Copynumber: 4.9 Consensus size: 47
16375396 CATTAGGGTT
* * * * *
16375406 ATATGAGATCCTATGTAAGACGATGTCTAGGACATGGCATTGAAATCG
1 ATATGAGATCCCATGTAAGACCATATCTGGGATATGGCATTG-AATCG
* *
16375454 ATATGAGATCCCATGTAAGACCATATATGGGATATGGCATTGGCATCG
1 ATATGAGATCCCATGTAAGACCATATCTGGGATATGGCATT-GAATCG
* ** * * *
16375502 ATATGTGATTTCGTGTAAGACCATGTCTGGGACATGGC-----ATCG
1 ATATGAGATCCCATGTAAGACCATATCTGGGATATGGCATTGAATCG
* * * * *
16375544 ATATGAGA-CATCGTGTAAGACCATAGCTGGGCTAT--CA--GCATCG
1 ATATGAGATC-CCATGTAAGACCATATCTGGGATATGGCATTGAATCG
*
16375587 ATATCTATGATCCCATGTAAGACCATATCTGGGATATGGCATTG
1 ATAT-GA-GATCCCATGTAAGACCATATCTGGGATATGGCATTG
16375631 GCATCTTACT
Statistics
Matches: 140, Mismatches: 25, Indels: 23
0.74 0.13 0.12
Matches are distributed among these distances:
40 1 0.01
42 32 0.23
43 8 0.06
44 1 0.01
45 23 0.16
46 1 0.01
47 2 0.01
48 70 0.50
49 2 0.01
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (47 bp):
ATATGAGATCCCATGTAAGACCATATCTGGGATATGGCATTGAATCG
Found at i:16382193 original size:48 final size:48
Alignment explanation
Indices: 16382122--16382257 Score: 173
Period size: 48 Copynumber: 2.8 Consensus size: 48
16382112 CATTAGGGTT
* * *
16382122 ATATGAGATCCCAAGTAAGACCATGTCTAGTACATGGCATTGGCATCA
1 ATATGAGATCTCATGTAAGACCATGTCTAGGACATGGCATTGGCATCA
* * * *
16382170 ATATGAGATCTCATGTAAGACCATATCTTGGATATGGCATTGGCATCG
1 ATATGAGATCTCATGTAAGACCATGTCTAGGACATGGCATTGGCATCA
* * * *
16382218 ATATGTGATTTCGTGTAAGACCATGTCTGGGACATGGCAT
1 ATATGAGATCTCATGTAAGACCATGTCTAGGACATGGCAT
16382258 CGATATGAGA
Statistics
Matches: 75, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 75 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (48 bp):
ATATGAGATCTCATGTAAGACCATGTCTAGGACATGGCATTGGCATCA
Found at i:16382209 original size:42 final size:42
Alignment explanation
Indices: 16382162--16382344 Score: 134
Period size: 48 Copynumber: 4.1 Consensus size: 42
16382152 TACATGGCAT
*
16382162 TGGCATCAATATGAGATCTCATGTAAGACCATATCTTGGATA
1 TGGCATCAATATGAGATCTCATGTAAGACCATATCTGGGATA
* * * * *
16382204 TGGCATTGGCATCGATATGTGATTTCGTGTAAGACCATGTCTGGGACA
1 TGGCA-T--CA---ATATGAGATCTCATGTAAGACCATATCTGGGATA
* * * * *
16382252 TGGCATCGATATGAGA-CATCGTGTAAGACCATAGCTAGGCTA
1 TGGCATCAATATGAGATC-TCATGTAAGACCATATCTGGGATA
* * * *
16382294 TCGGCATCGATACGTGTGATCCCATGTAAGACAATATCTGGGATA
1 T-GGCATCAATA--TGAGATCTCATGTAAGACCATATCTGGGATA
16382339 TGGCAT
1 TGGCAT
16382345 TGGCATCTTA
Statistics
Matches: 109, Mismatches: 21, Indels: 20
0.73 0.14 0.13
Matches are distributed among these distances:
42 32 0.29
43 11 0.10
44 5 0.05
45 26 0.24
46 1 0.01
47 1 0.01
48 33 0.30
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.28
Consensus pattern (42 bp):
TGGCATCAATATGAGATCTCATGTAAGACCATATCTGGGATA
Found at i:16384580 original size:22 final size:23
Alignment explanation
Indices: 16384553--16384601 Score: 82
Period size: 22 Copynumber: 2.2 Consensus size: 23
16384543 AACAAGCAAA
16384553 TGTTGGTATATGATGTAAGCTT-
1 TGTTGGTATATGATGTAAGCTTG
*
16384575 TGTTGGTGTATGATGTAAGCTTG
1 TGTTGGTATATGATGTAAGCTTG
16384598 TGTT
1 TGTT
16384602 TCATGTTGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
22 21 0.84
23 4 0.16
ACGTcount: A:0.18, C:0.04, G:0.31, T:0.47
Consensus pattern (23 bp):
TGTTGGTATATGATGTAAGCTTG
Found at i:16384611 original size:23 final size:22
Alignment explanation
Indices: 16384561--16384611 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
16384551 AATGTTGGTA
**
16384561 TATGATGTAAGCTTTGTTGGTG
1 TATGATGTAAGCTTTGTTCATG
16384583 TATGATGTAAGCTTGTGTTTCATG
1 TATGATGTAAGCTT-TG-TTCATG
16384607 T-TGAT
1 TATGAT
16384612 CTTGTGATGA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 14 0.56
23 6 0.24
24 5 0.20
ACGTcount: A:0.20, C:0.06, G:0.27, T:0.47
Consensus pattern (22 bp):
TATGATGTAAGCTTTGTTCATG
Found at i:16391220 original size:24 final size:25
Alignment explanation
Indices: 16391185--16391255 Score: 92
Period size: 24 Copynumber: 2.9 Consensus size: 25
16391175 TATATTATCA
* *
16391185 ACTAAATTCGCACACATAGTGCTA-
1 ACTAAACTCGCACACATAGTGCCAT
* *
16391209 ATTAAGCTCGCACACATAGTGCCAT
1 ACTAAACTCGCACACATAGTGCCAT
16391234 ACTAAACT-GCACACATAGTGCC
1 ACTAAACTCGCACACATAGTGCC
16391256 TGAAATTTTC
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
24 34 0.85
25 6 0.15
ACGTcount: A:0.35, C:0.28, G:0.14, T:0.23
Consensus pattern (25 bp):
ACTAAACTCGCACACATAGTGCCAT
Found at i:16391306 original size:24 final size:24
Alignment explanation
Indices: 16391218--16391328 Score: 77
Period size: 24 Copynumber: 4.6 Consensus size: 24
16391208 AATTAAGCTC
*
16391218 GCACACATAGTGCCATACTAAA-CT
1 GCACACATAGTGCCATTC-AAATCT
* *
16391242 GCACACATAGTGCC--TGAAATTT
1 GCACACATAGTGCCATTCAAATCT
* * *
16391264 TCACTCAT-GCATCGACATTCAAATCT
1 GCACACATAG--T-GCCATTCAAATCT
* * *
16391290 GCACACATAGTGCCATTTAATTCC
1 GCACACATAGTGCCATTCAAATCT
16391314 GCACACATAGTGCCA
1 GCACACATAGTGCCA
16391329 ATGTTAACTC
Statistics
Matches: 66, Mismatches: 14, Indels: 14
0.70 0.15 0.15
Matches are distributed among these distances:
21 4 0.06
22 7 0.11
23 1 0.02
24 40 0.61
25 1 0.02
26 12 0.18
27 1 0.02
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (24 bp):
GCACACATAGTGCCATTCAAATCT
Found at i:16391401 original size:94 final size:94
Alignment explanation
Indices: 16391284--16391471 Score: 313
Period size: 94 Copynumber: 2.0 Consensus size: 94
16391274 ATCGACATTC
* *
16391284 AAATCTGCACACATAGTGCCATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
* *
16391349 GGCAATTTACTTAATTGAAATAGCATATA
66 GGCAACTTACTTAATTCAAATAGCATATA
* * *
16391378 AAATCTGCACACAAAGTGACATTTAATTCTGCATACATAGTGCCAATGTTAACTCATTATAATAT
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
16391443 GGCAACTTACTTAATTCAAATAGCATATA
66 GGCAACTTACTTAATTCAAATAGCATATA
16391472 CGGTCACATT
Statistics
Matches: 87, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
94 87 1.00
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.31
Consensus pattern (94 bp):
AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
GGCAACTTACTTAATTCAAATAGCATATA
Found at i:16398963 original size:24 final size:25
Alignment explanation
Indices: 16398935--16398998 Score: 87
Period size: 24 Copynumber: 2.6 Consensus size: 25
16398925 TCAACCAAAT
* * *
16398935 TCGCACACATAGTGCTA-ATTAAGC
1 TCGCACACATAGTGCCATACTAAAC
16398959 TCGCACACATAGTGCCATACTAAAC
1 TCGCACACATAGTGCCATACTAAAC
16398984 -CGCACACATAGTGCC
1 TCGCACACATAGTGCC
16398999 TGAAATTTTC
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
24 31 0.86
25 5 0.14
ACGTcount: A:0.33, C:0.31, G:0.16, T:0.20
Consensus pattern (25 bp):
TCGCACACATAGTGCCATACTAAAC
Found at i:16399049 original size:24 final size:24
Alignment explanation
Indices: 16399022--16399071 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
16399012 CATGCATCGA
*
16399022 CATTCAAATCTGCACACATAGTGC
1 CATTCAAATCCGCACACATAGTGC
* *
16399046 CATTTAATTCCGCACACATAGTGC
1 CATTCAAATCCGCACACATAGTGC
16399070 CA
1 CA
16399072 ATGTTAACCC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.32, C:0.30, G:0.12, T:0.26
Consensus pattern (24 bp):
CATTCAAATCCGCACACATAGTGC
Found at i:16399244 original size:94 final size:94
Alignment explanation
Indices: 16399027--16399248 Score: 374
Period size: 94 Copynumber: 2.4 Consensus size: 94
16399017 ATCGACATTC
* * *
16399027 AAATCTGCACACATAGTGCCATTTAATTCCGCACACATAGTGCCAATGTTAACCCATTATAATAA
1 AAATCTGCACACAAAGTGACATTTAATTCTGCACACATAGTGCCAATGTTAACCCATTATAATAA
*
16399092 GGCAATTTACTTAATTCAAATAGCATATG
66 GGCAATTTACTTAATTCAAATAGCATATA
* *
16399121 AAATCTGCACACAAAGTGACATTTAATTCTGTACACATAGTGCCAATGTTAACTCATTATAATAA
1 AAATCTGCACACAAAGTGACATTTAATTCTGCACACATAGTGCCAATGTTAACCCATTATAATAA
*
16399186 GGCAATTTACTTAATTGAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
16399215 AAATCTGCACACAAAGTGACATTTAATTCT-CACA
1 AAATCTGCACACAAAGTGACATTTAATTCTGCACA
16399249 AACGCCGCTA
Statistics
Matches: 120, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
93 3 0.03
94 117 0.98
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.30
Consensus pattern (94 bp):
AAATCTGCACACAAAGTGACATTTAATTCTGCACACATAGTGCCAATGTTAACCCATTATAATAA
GGCAATTTACTTAATTCAAATAGCATATA
Found at i:16399295 original size:43 final size:43
Alignment explanation
Indices: 16399247--16399328 Score: 155
Period size: 43 Copynumber: 1.9 Consensus size: 43
16399237 TTAATTCTCA
16399247 CAAACGCCGCTAAAAACCATGACCTTTAGCGGCGCTTTTTTTG
1 CAAACGCCGCTAAAAACCATGACCTTTAGCGGCGCTTTTTTTG
*
16399290 CAAACGCCGCTAAAAATCATGACCTTTAGCGGCGCTTTT
1 CAAACGCCGCTAAAAACCATGACCTTTAGCGGCGCTTTT
16399329 CCCACAAACG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (43 bp):
CAAACGCCGCTAAAAACCATGACCTTTAGCGGCGCTTTTTTTG
Done.