Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 46 of 284
Found at i:16399337 original size:43 final size:43
Alignment explanation
Indices: 16399245--16399347 Score: 152
Period size: 43 Copynumber: 2.4 Consensus size: 43
16399235 ATTTAATTCT
**
16399245 CACAAACGCCGCTAAAAACCATGACCTTTAGCGGCGCTTTTTT
1 CACAAACGCCGCTAAAAACCATGACCTTTAGCGGCGCTTTTCC
** *
16399288 TGCAAACGCCGCTAAAAATCATGACCTTTAGCGGCGCTTTTCC
1 CACAAACGCCGCTAAAAACCATGACCTTTAGCGGCGCTTTTCC
*
16399331 CACAAACGCTGCTAAAA
1 CACAAACGCCGCTAAAA
16399348 TCTTAACCTT
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 52 1.00
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (43 bp):
CACAAACGCCGCTAAAAACCATGACCTTTAGCGGCGCTTTTCC
Found at i:16400349 original size:15 final size:16
Alignment explanation
Indices: 16400323--16400353 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
16400313 TCTCTCTTGC
16400323 TTTTAGATCATATATA
1 TTTTAGATCATATATA
16400339 TTTTA-ATCATATATA
1 TTTTAGATCATATATA
16400354 AGACAAAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.39, C:0.06, G:0.03, T:0.52
Consensus pattern (16 bp):
TTTTAGATCATATATA
Found at i:16402008 original size:29 final size:29
Alignment explanation
Indices: 16401945--16402012 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
16401935 TAATCAACCA
*
16401945 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
16401974 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
16402003 CGCACACTTA
1 CGCACACTTA
16402013 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:16402124 original size:174 final size:174
Alignment explanation
Indices: 16401834--16402161 Score: 620
Period size: 174 Copynumber: 1.9 Consensus size: 174
16401824 AACTCAAGGT
* * *
16401834 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAAGTCGCACCCTTAATGTAAATAATTTATA
16401899 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
16401964 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
16402008 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAAGTCGCACCCTTAATGTAAATAATTTATA
16402073 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
16402138 ACTTTAAACTCACACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
16402162 TGTACAATTT
Statistics
Matches: 150, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 150 1.00
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:16402155 original size:29 final size:30
Alignment explanation
Indices: 16402121--16402192 Score: 96
Period size: 29 Copynumber: 2.5 Consensus size: 30
16402111 ATCAACCACG
*
16402121 CACACTTAGTGCCATGTAC-TTTAAACTCA
1 CACACTTAGTGCCATGTACATTTAAACCCA
*
16402150 CACACTTAGTG-C-TGTACAATTTAAACCCG
1 CACACTTAGTGCCATGTAC-ATTTAAACCCA
16402179 CACACTTAGTGCCA
1 CACACTTAGTGCCA
16402193 ATCTCATGAC
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
27 5 0.14
28 1 0.03
29 30 0.81
30 1 0.03
ACGTcount: A:0.31, C:0.29, G:0.12, T:0.28
Consensus pattern (30 bp):
CACACTTAGTGCCATGTACATTTAAACCCA
Found at i:16405488 original size:37 final size:37
Alignment explanation
Indices: 16405438--16405516 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
16405428 TTATTACGAA
* *
16405438 GTCTTACCCGGACATAAT-CTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCT-CACACGAAGTCATCGG
* *
16405475 GTCTTATCCGGACAAAATCCTCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCTCACACGAAGTCATCGG
16405512 GTCTT
1 GTCTT
16405517 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCTCACACGAAGTCATCGG
Found at i:16405739 original size:47 final size:47
Alignment explanation
Indices: 16405688--16406333 Score: 871
Period size: 47 Copynumber: 13.3 Consensus size: 47
16405678 CGGCCCTGTC
16405688 ACATATATACACTTTCACATTCATCACATCGG-TCATTAGGCCTTATT
1 ACATATATACACTTTCACATTCATCACATCGGCT-ATTAGGCCTTATT
* * * *
16405735 ACATATATACACTTCCACATTCATCGCATCGGCCATTAGGCCTTATC
1 ACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATT
* *
16405782 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGTCTTATT
1 ACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATT
* *
16405829 ACATATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATC
1 ACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATT
*
16405876 ACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATT
1 ACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATT
16405923 ACATATATACATATACTTTCACATTCATCACATCGGCTATTAGGCCTTATT
1 ACATATATAC----ACTTTCACATTCATCACATCGGCTATTAGGCCTTATT
16405974 ACATATATACATATACTTTCACATTCATCACATCGGCTATTAGGCCTTATT
1 ACATATATAC----ACTTTCACATTCATCACATCGGCTATTAGGCCTTATT
*
16406025 ACATATATACATACACTTTCACATTCATCACCTCGGCTATTAGGCCTTATT
1 AC--ATAT--ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATT
* * * * *
16406076 ACACATATACAATTTCACATTTATCACGTCGGCTATTAGGCCTTATC
1 ACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATT
* *
16406123 ATACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATT
1 ACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATT
* *
16406170 ACATATATACATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
1 ACATATATAC----ACTTTCACATTCATCACATCGGCTATTAGGCCTTATT
* *
16406221 ACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
1 AC--ATAT--ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATT
*
16406272 ACATATACATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATC
1 ACATAT--ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATT
*
16406321 ACACATATACACT
1 ACATATATACACT
16406334 CTCTTGGCTG
Statistics
Matches: 549, Mismatches: 33, Indels: 34
0.89 0.05 0.06
Matches are distributed among these distances:
47 275 0.50
49 54 0.10
51 204 0.37
53 8 0.01
55 8 0.01
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (47 bp):
ACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATT
Found at i:16405961 original size:51 final size:50
Alignment explanation
Indices: 16405698--16406331 Score: 862
Period size: 51 Copynumber: 13.0 Consensus size: 50
16405688 ACATATATAC
16405698 ACTTTCACATTCATCACATCGG-TCATTAGGCCTTATTACATATATAC---
1 ACTTTCACATTCATCACATCGGCT-ATTAGGCCTTATTACATATATACATA
* * * *
16405745 ACTTCCACATTCATCGCATCGGCCATTAGGCCTTATCACATATATAC---
1 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATA
* *
16405792 ACTTTCACATTCATCACATCGGCCATTAGGTCTTATTACATATATAC---
1 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATA
* * *
16405839 ACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACACATATAC---
1 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATA
16405886 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATA
1 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATA
16405936 TACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATA
1 -ACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATA
16405987 TACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATA
1 -ACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATA
* *
16406038 CACTTTCACATTCATCACCTCGGCTATTAGGCCTTATTACACATATAC--A
1 -ACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATA
* * *
16406087 A-TTTCACATTTATCACGTCGGCTATTAGGCCTTA-T-CATACAT--ATA
1 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATA
16406132 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATA
1 -ACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATA
* *
16406183 TACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACATA
1 -ACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATA
* *
16406234 CACTTTCACATTCATCACATCGGCCATTAGGCCTTA-T-CACATATACATA
1 -ACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATA
* *
16406283 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACA
1 -ACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACA
16406332 CTCTCTTGGC
Statistics
Matches: 538, Mismatches: 34, Indels: 26
0.90 0.06 0.04
Matches are distributed among these distances:
45 6 0.01
46 2 0.00
47 233 0.43
48 2 0.00
49 53 0.10
51 242 0.45
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (50 bp):
ACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATA
Found at i:16406120 original size:247 final size:244
Alignment explanation
Indices: 16405698--16406331 Score: 1055
Period size: 247 Copynumber: 2.6 Consensus size: 244
16405688 ACATATATAC
*
16405698 ACTTTCACATTCATCACATCGG-TCATTAGGCCTTATTACATATATAC---ACTTCCACATTCAT
1 ACTTTCACATTCATCACATCGGCT-ATTAGGCCTTATTACATATATACATAACTTTCACATTCAT
* *
16405759 CGCATCGGCCATTAGGCCTTATCACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGG
65 CACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCGGCTATTAGG
* * *
16405822 TCTTATTACATATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACACATATACA
130 CCTTATTACACATATACAATTTCACATTCATCACGTCGGCTATTAGGCCTTATCACACATATACA
16405887 CTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATAT
195 CTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATAT
16405937 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATATACTTTCACATTCAT
1 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATA-ACTTTCACATTCAT
* * *
16406002 CACATCGGCTATTAGGCCTTATTACATATATACATACACTTTCACATTCATCACCTCGGCTATTA
65 CACATCGGCCATTAGGCCTTA-T-CACATATACATACACTTTCACATTCATCACATCGGCTATTA
* *
16406067 GGCCTTATTACACATATACAATTTCACATTTATCACGTCGGCTATTAGGCCTTATCATACATATA
128 GGCCTTATTACACATATACAATTTCACATTCATCACGTCGGCTATTAGGCCTTATCACACATATA
16406132 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATAT
193 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATAT
* *
16406184 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACATACACTTTCACATTCAT
1 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATA-ACTTTCACATTCAT
16406249 CACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCGGCTATTAGG
65 CACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCGGCTATTAGG
*
16406314 CCTTATCACACATATACA
130 CCTTATTACACATATACA
16406332 CTCTCTTGGC
Statistics
Matches: 368, Mismatches: 18, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
239 45 0.12
240 1 0.00
243 32 0.09
244 1 0.00
245 64 0.17
246 1 0.00
247 224 0.61
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (244 bp):
ACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATAACTTTCACATTCATC
ACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCGGCTATTAGGC
CTTATTACACATATACAATTTCACATTCATCACGTCGGCTATTAGGCCTTATCACACATATACAC
TTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATAT
Found at i:16411135 original size:18 final size:15
Alignment explanation
Indices: 16411104--16411148 Score: 54
Period size: 18 Copynumber: 2.7 Consensus size: 15
16411094 TGAGTATGTG
16411104 AATTGAAAATTGATTGAA
1 AATTGAAAA-TGATT--A
16411122 AATTGGAAAATGATTA
1 AATT-GAAAATGATTA
16411138 AATTGAAAATG
1 AATTGAAAATG
16411149 TGAGAAATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
15 7 0.27
16 5 0.19
18 9 0.35
19 5 0.19
ACGTcount: A:0.51, C:0.00, G:0.18, T:0.31
Consensus pattern (15 bp):
AATTGAAAATGATTA
Found at i:16411381 original size:38 final size:38
Alignment explanation
Indices: 16411281--16411381 Score: 87
Period size: 38 Copynumber: 2.6 Consensus size: 38
16411271 CCTCGAGTCA
* **
16411281 ATGAGACACTGGGTCTCATACTGTTACTTCGGATAGATTCG
1 ATGAGACACTGGGT-TCA-ACT-TTACTTAGGATAGAGCCG
** * * *
16411322 ATGAGGTACTGGGTACCACTTTACTTAGGCTAG-GCCG
1 ATGAGACACTGGGTTCAACTTTACTTAGGATAGAGCCG
16411359 ATGAGACACTGGGTGTCAACTTT
1 ATGAGACACTGGGT-TCAACTTT
16411382 GCTTCGAACT
Statistics
Matches: 47, Mismatches: 12, Indels: 5
0.73 0.19 0.08
Matches are distributed among these distances:
37 14 0.30
38 17 0.36
39 3 0.06
40 1 0.02
41 12 0.26
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.30
Consensus pattern (38 bp):
ATGAGACACTGGGTTCAACTTTACTTAGGATAGAGCCG
Found at i:16413592 original size:43 final size:43
Alignment explanation
Indices: 16413544--16413731 Score: 202
Period size: 43 Copynumber: 4.4 Consensus size: 43
16413534 CGTTATTAGT
* * * *
16413544 CTAAAAGCCATGTTCTTTACTAGTGTTTGTGGGGAAAGCGCCA
1 CTAAAAGTCATGTTCTTTACTAGCGTTTGTGGGAAAAGCGCCG
16413587 CTAAAAGTCATGTTCTTTAGC-AGCGTTTGTGGGAAAAGCGCCG
1 CTAAAAGTCATGTTCTTTA-CTAGCGTTTGTGGGAAAAGCGCCG
* * * * * *
16413630 CTAAAGGTCATGTTCTATAGTGGCGTTTGTAGGAAAAGCACCG
1 CTAAAAGTCATGTTCTTTACTAGCGTTTGTGGGAAAAGCGCCG
* * *
16413673 -TAAAAGGTCATGTTCTATAACGA-TGTTTGTGGGAAAAGCGCCG
1 CTAAAA-GTCATGTTCT-TTACTAGCGTTTGTGGGAAAAGCGCCG
*
16413716 CTAAAGGTCATGTTCT
1 CTAAAAGTCATGTTCT
16413732 ATAGCTGTAT
Statistics
Matches: 120, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
42 4 0.03
43 110 0.92
44 6 0.05
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (43 bp):
CTAAAAGTCATGTTCTTTACTAGCGTTTGTGGGAAAAGCGCCG
Found at i:16413732 original size:43 final size:43
Alignment explanation
Indices: 16413567--16413780 Score: 229
Period size: 43 Copynumber: 5.0 Consensus size: 43
16413557 TCTTTACTAG
* * * *
16413567 TGTTTGTGGGGAAAGCGCCACTAAAAGTCATGTTCTTTAGC-A
1 TGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGTTCTATAGCGA
* * *
16413609 GCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGTTCTATAGTGG
1 -TGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGTTCTATAGCGA
* * * *
16413653 CGTTTGTAGGAAAAGCACCG-TAAAAGGTCATGTTCTATAACGA
1 TGTTTGTGGGAAAAGCGCCGCT-AAAGGTCATGTTCTATAGCGA
16413696 TGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGTTCTATAGCTGTA
1 TGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGTTCTATAGC-G-A
* * * *
16413741 TTTTTGTGAG-AAA-CTCCGCTAAAGGTCATGTTCTGTAGCG
1 TGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGTTCTATAGCG
16413781 GCATTTTCCA
Statistics
Matches: 146, Mismatches: 20, Indels: 11
0.82 0.11 0.06
Matches are distributed among these distances:
42 2 0.01
43 130 0.89
44 5 0.03
45 9 0.06
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (43 bp):
TGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGTTCTATAGCGA
Found at i:16421015 original size:40 final size:38
Alignment explanation
Indices: 16420970--16421087 Score: 137
Period size: 39 Copynumber: 3.0 Consensus size: 38
16420960 AAGTGACCAT
16420970 ATCCGGACTAAGATTCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGA-TAAG-TTCGAAGGCATTTGTGCGAGTTACTAA
* ** *
16421010 TTCCGGGATAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 ATCC-GGATAAGTTCGAAGGCATTTGTGCGAGTTACTAA
* *
16421049 ATCTGGGTTAAGTTCCGAAGGCATTTGTGCGAGTTACTA
1 ATC-CGGATAAGTT-CGAAGGCATTTGTGCGAGTTACTA
16421088 TAACCGGGCT
Statistics
Matches: 65, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
39 32 0.49
40 30 0.46
41 3 0.05
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (38 bp):
ATCCGGATAAGTTCGAAGGCATTTGTGCGAGTTACTAA
Found at i:16421031 original size:39 final size:40
Alignment explanation
Indices: 16420985--16421115 Score: 167
Period size: 40 Copynumber: 3.3 Consensus size: 40
16420975 GACTAAGATT
16420985 CGAAGGCATTTGTGCGAGTTACTAATTCCGGGATAAG-CC
1 CGAAGGCATTTGTGCGAGTTACTAATTCCGGGATAAGTCC
* * * * *
16421024 CGAAGGCATTGGTGCGAGTTACTAAATCTGGGTTAAGTTC
1 CGAAGGCATTTGTGCGAGTTACTAATTCCGGGATAAGTCC
* * *
16421064 CGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCC
1 CGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGATAAGTCC
16421104 CGAAGGCATTTG
1 CGAAGGCATTTG
16421116 AACGAGTAGC
Statistics
Matches: 78, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
39 34 0.44
40 44 0.56
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.27
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTAATTCCGGGATAAGTCC
Found at i:16421137 original size:79 final size:78
Alignment explanation
Indices: 16420968--16421148 Score: 197
Period size: 79 Copynumber: 2.3 Consensus size: 78
16420958 CTAAGTGACC
* *
16420968 ATATCCGGACTAAGATT-CGAAGGCATTTGTGCGAGTTACTAATTCCGGGATAAGCCCGAAGGCA
1 ATATCCGG-TTAAG-TTCCGAAGGCATTTGTGCGAGTTACTAATACCGGGATAAGCCCGAAGGCA
**
16421032 TTGGTGCGAGTTACT
64 TTGGAACGAGTTACT
* * * *
16421047 AAATCTGGGTTAAGTTCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGC
1 ATATC-CGGTTAAGTTCCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGATAAG-CCCGAAGGC
*
16421111 ATTTGAACGAG-TAGCT
63 ATTGGAACGAGTTA-CT
*
16421127 ATATCCGGTTAAATTCCGAAGG
1 ATATCCGGTTAAGTTCCGAAGG
16421149 TACGTGATTC
Statistics
Matches: 85, Mismatches: 12, Indels: 10
0.79 0.11 0.09
Matches are distributed among these distances:
78 4 0.05
79 56 0.66
80 25 0.29
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (78 bp):
ATATCCGGTTAAGTTCCGAAGGCATTTGTGCGAGTTACTAATACCGGGATAAGCCCGAAGGCATT
GGAACGAGTTACT
Found at i:16428530 original size:39 final size:40
Alignment explanation
Indices: 16428430--16428614 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
16428420 TCGAATGATG
* * * *
16428430 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
16428470 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
16428510 TTCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
16428549 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
16428590 -CCGGGCTATGTCCTGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
16428615 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:16428595 original size:79 final size:81
Alignment explanation
Indices: 16428431--16428612 Score: 212
Period size: 79 Copynumber: 2.3 Consensus size: 81
16428421 CGAATGATGT
* *
16428431 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
*
16428495 GTGCGAGTTACTAATT
66 GTGCGAGTTACTAATA
* * * * **
16428511 TCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATT
16428573 TGTGCGAGTTACT-ATAA
65 TGTGCGAGTTACTAAT-A
* *
16428590 CCGGGCTATGTCCTGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
16428613 TGAACGAGTA
Statistics
Matches: 86, Mismatches: 12, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 57 0.66
80 26 0.30
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAATA
Found at i:16428636 original size:79 final size:79
Alignment explanation
Indices: 16428483--16428647 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
16428473 GGACTAAGAT
** **
16428483 CCGAAGGCATTTGTGCGAGTTACTAATTTCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
16428548 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
16428562 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCTGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
16428625 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
16428641 CCGAAGG
1 CCGAAGG
16428648 TACGTGATTC
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.66
80 23 0.32
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:16431691 original size:46 final size:47
Alignment explanation
Indices: 16431597--16431726 Score: 174
Period size: 47 Copynumber: 2.8 Consensus size: 47
16431587 GTGTGAGTGA
*
16431597 TACCTTGATTTGGCTACGGACCATGGTATAGGTA-TTCAAAGAGGAGT
1 TACCTTGATTTGGCTACGG-CCATGGTATAGGTACTTCAAAGAGAAGT
** *
16431644 TACCTTGATTTGGCTACGGCCATGGTATAGGTACTTC-TGGATAAGT
1 TACCTTGATTTGGCTACGGCCATGGTATAGGTACTTCAAAGAGAAGT
* *
16431690 TAACTTGATTTGGCTGCAGGCCATGGTATAGGTACTT
1 TACCTTGATTTGGCTAC-GGCCATGGTATAGGTACTT
16431727 ATCAATTAAG
Statistics
Matches: 75, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
46 34 0.45
47 41 0.55
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGCCATGGTATAGGTACTTCAAAGAGAAGT
Found at i:16432371 original size:22 final size:22
Alignment explanation
Indices: 16432329--16432372 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
16432319 GATATAAGTT
* *
16432329 TTGATTAGGTATTTGGCTTGAA
1 TTGATTAGGAATTTGGATTGAA
16432351 TTGATTATGGAATTT-GATTGAA
1 TTGATTA-GGAATTTGGATTGAA
16432373 ATGGATATGG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.27, C:0.02, G:0.25, T:0.45
Consensus pattern (22 bp):
TTGATTAGGAATTTGGATTGAA
Found at i:16446100 original size:26 final size:25
Alignment explanation
Indices: 16446024--16446101 Score: 84
Period size: 26 Copynumber: 3.0 Consensus size: 25
16446014 GGAAAGTGTC
*
16446024 CAAAGAGCCATTATTTAGGAAGCTCA
1 CAAAGAGCCATTA-TTGGGAAGCTCA
* * *
16446050 CAAAGAGCCTTTAATCGAGAAGCTCA
1 CAAAGAGCCATT-ATTGGGAAGCTCA
*
16446076 CAAAGAGCCATATATTGGGATGCTCA
1 CAAAGAGCCAT-TATTGGGAAGCTCA
16446102 TAAGAGCTGC
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
26 40 0.95
27 2 0.05
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.22
Consensus pattern (25 bp):
CAAAGAGCCATTATTGGGAAGCTCA
Found at i:16454543 original size:30 final size:30
Alignment explanation
Indices: 16454507--16454565 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
16454497 TTCGAGCCTA
*
16454507 GGGGCAAAATCATAATTTTGCAAAGGTTTT
1 GGGGCAAAATCATAATTTTGCAAAAGTTTT
** *
16454537 GGGGCAAAATTGTAATTTTTCAAAAGTTT
1 GGGGCAAAATCATAATTTTGCAAAAGTTT
16454566 GAGCTAGGGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.34, C:0.08, G:0.22, T:0.36
Consensus pattern (30 bp):
GGGGCAAAATCATAATTTTGCAAAAGTTTT
Found at i:16455148 original size:44 final size:44
Alignment explanation
Indices: 16455100--16455186 Score: 122
Period size: 44 Copynumber: 2.0 Consensus size: 44
16455090 TTGATATCTC
* *
16455100 AAAGTCCATGGTT-GTACCATGGCAATTAAGGAAGAATTGACGGA
1 AAAGTCCAT-GTTCATAACATGGCAATTAAGGAAGAATTGACGGA
* *
16455144 AAAGTCCATGTTCATAACATGGCATTTAAGGAGGAATTGACGG
1 AAAGTCCATGTTCATAACATGGCAATTAAGGAAGAATTGACGG
16455187 TTAAGGATAC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
43 3 0.08
44 35 0.92
ACGTcount: A:0.36, C:0.14, G:0.26, T:0.24
Consensus pattern (44 bp):
AAAGTCCATGTTCATAACATGGCAATTAAGGAAGAATTGACGGA
Found at i:16458882 original size:21 final size:21
Alignment explanation
Indices: 16458847--16458904 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
16458837 GTGAAGGGTA
* * *
16458847 GCACACGGGCGTGTGACAGAG
1 GCACACGGCCATGTGACACAG
16458868 GCACAC-GCCTATGTGACACAG
1 GCACACGGCC-ATGTGACACAG
*
16458889 GGACACGGCCATGTGA
1 GCACACGGCCATGTGA
16458905 ACTGCTCGTG
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
20 2 0.06
21 26 0.84
22 3 0.10
ACGTcount: A:0.26, C:0.28, G:0.34, T:0.12
Consensus pattern (21 bp):
GCACACGGCCATGTGACACAG
Found at i:16463564 original size:17 final size:17
Alignment explanation
Indices: 16463542--16463582 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
16463532 GAAATTGGAC
*
16463542 CGTGTGGGTCCTACGGG
1 CGTGTGGGCCCTACGGG
*
16463559 CGTGTGGGCCCTATGGG
1 CGTGTGGGCCCTACGGG
*
16463576 CATGTGG
1 CGTGTGG
16463583 AAATTATTGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.07, C:0.22, G:0.46, T:0.24
Consensus pattern (17 bp):
CGTGTGGGCCCTACGGG
Found at i:16481957 original size:40 final size:39
Alignment explanation
Indices: 16481910--16482005 Score: 115
Period size: 40 Copynumber: 2.4 Consensus size: 39
16481900 TAAGTCGGTA
* *
16481910 TCGCACACTTAGTGCCTTATATAGCCGAAGCTATGCT-AAC
1 TCGCACACTTAGTGCC-T-TATAGCCAAAGCTATACTAAAC
*
16481950 TCGCACACTTAGTGCAACTTATAGCCAAAGCTATATTAAAC
1 TCGCACACTTAGTGC--CTTATAGCCAAAGCTATACTAAAC
16481991 -CGCACACTTAGTGCC
1 TCGCACACTTAGTGCC
16482006 AATCATAGTC
Statistics
Matches: 50, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
38 1 0.02
40 44 0.88
41 4 0.08
42 1 0.02
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (39 bp):
TCGCACACTTAGTGCCTTATAGCCAAAGCTATACTAAAC
Found at i:16487155 original size:541 final size:542
Alignment explanation
Indices: 16485971--16487491 Score: 2557
Period size: 541 Copynumber: 2.8 Consensus size: 542
16485961 NNNNNNNNNN
16485971 TTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATT
1 TTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATT
*
16486036 TGTAAAAGTTATAAAATTTGTCATCAAAGAATGATTTAGTAGAAATTGTGGGTTTTTATAGCTAT
66 TGTAAAAGTTATAAAATTTGTCATCAAAGAATGATTTAGTAGAAATTGTGGGTTTTTATAGTTAT
* *
16486101 CAAAGTGGTTCGGCTAGCCTTAAGGTGAAAATAAATTGAATGCAAATTATTTTACAAGCTTAGGG
131 GAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGCAAATTATTTTACAAGCTTAGGG
16486166 GCAAAAGTGTAAATATAATAAAATTTCGGGGTAATAATGTAATTTTTGCCATAGTATGATAAAAT
196 GCAAAAGTGTAAATATAATAAAATTTCGGGGTAATAATGTAATTTTTGCCATAGTATGATAAAAT
* *
16486231 TTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTCGTCATCTTCAACCCCTTGGC
261 TTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTAGGC
* * * * * *
16486296 CAAAATTTTGAAGACCACCATGGCTATGGTTTTGTTTAAGCTTTCCAAGGTCCACAGTAAGTCCG
326 CGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGGTTAAGCTTTCCAAGCTCCATAGTAAGTCCG
*
16486361 TTCTTGCCCCGTTTTTAACGATTTTCACGTTTTTAAAATCTTTGTAAAATGATCTACTTATTTCT
391 TTCTTGCCCCGTTTTTAACGATTTTCACGTTTTTAAAATCTTTGTAAAATGATCTACCTATTTCT
* *
16486426 ACCATTTATTGGAGTTATGGTGAAGGTCTAAGGTTTGAACCATGTTATAAATTGTTCTATTTTGA
456 ACCATTTATTGGAGTTATGATGAAGGTCTAAGGTTTGAACCATGCTATAAATTGTTCTATTTTGA
*
16486491 TGTTTAATGGTTGATTATGCAT
521 TGTTTAATGGTAGATTATGCAT
* * *
16486513 GTTTATGGATGGAGAAACAACTTTTGCTAAGTGATTTTCCATGAAAATGCTAAAAAGGACTAATT
1 TTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATT
*
16486578 TGTAAAAGTTATAAAATTTGTCAT-ACAAGTATGATTTAGTAGAAATTGTGGGTTTTTATAGTTA
66 TGTAAAAGTTATAAAATTTGTCATCA-AAGAATGATTTAGTAGAAATTGTGGGTTTTTATAGTTA
* * * *
16486642 TGAAAGTGGTTCGGCTAGGCTTTAGGTGAAAATAAATTGAATGAAAATTCTTTTACAAGCCTAGG
130 TGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGCAAATTATTTTACAAGCTTAGG
* * * *
16486707 GGCAAAAGTGTAAATATGATAAAATTTAGAGGTAA-AATTGTAATTTTTGCCATAGAATGATAAA
195 GGCAAAAGTGTAAATATAATAAAATTTCGGGGTAATAA-TGTAATTTTTGCCATAGTATGATAAA
* *
16486771 ATTTAGTAATTAAATGTTTAAAGAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCG
259 ATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTAG
* * *
16486836 GCCGAAAGTTTGAA-ACCACTATGGCTAGGGTTTTGGTTAAGGTTTCCAAGCTCCATATTAAGTC
324 GCCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGGTTAAGCTTTCCAAGCTCCATAGTAAGTC
* * * *
16486900 CGTTCTTGCCCCGTTTTTAATGATTTTCACATTTTTAAAATCCTTGTAACATGATCTACCTATTT
389 CGTTCTTGCCCCGTTTTTAACGATTTTCACGTTTTTAAAATCTTTGTAAAATGATCTACCTATTT
* * * *
16486965 CTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAGCCATGCTATAAATT-TGTGTATTT
454 CTACCATTTATTGGAGTTATGATGAAGGTCTAAGGTTTGAACCATGCTATAAATTGT-TCTATTT
16487029 TGATGTTTAATGGTAGATTATGCAT
518 TGATGTTTAATGGTAGATTATGCAT
** * *
16487054 TTTTATGGTTTAAGAAACAACTTTTGTTAAGTGATTTTTAATGAAAATGCTAAAAAGGACTAATT
1 TTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATT
16487119 TGTAAAAGTTATAAAATTTGTCATCAAAGAATGATTTAGTAGAAATTGTGGGTTTTTATAGTTAT
66 TGTAAAAGTTATAAAATTTGTCATCAAAGAATGATTTAGTAGAAATTGTGGGTTTTTATAGTTAT
*
16487184 GAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGCAAATTATTTTACAAACTTAGGG
131 GAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGCAAATTATTTTACAAGCTTAGGG
16487249 GCAAAAGTGTAAATATAATAAAATTTCGGGGTAATAATGTAATTTTTGCCATAGTATGATAAAAT
196 GCAAAAGTGTAAATATAATAAAATTTCGGGGTAATAATGTAATTTTTGCCATAGTATGATAAAAT
*
16487314 TTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCC-AATTTTGGTCATCTTCAACCCCTAGGT
261 TTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTAGGC
*
16487378 CGAAAGTTTGAAGACCACCATGGCTAGGGTTTTCGTTAAGCTTTCCAAGCTCCATAGTAAGTCCG
326 CGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGGTTAAGCTTTCCAAGCTCCATAGTAAGTCCG
16487443 TTCTTGCCCCGTTTTTAACGATTTTCACGTTTTTAAAATCTTTGTAAAA
391 TTCTTGCCCCGTTTTTAACGATTTTCACGTTTTTAAAATCTTTGTAAAA
16487492 CCCATGGCTA
Statistics
Matches: 906, Mismatches: 67, Indels: 13
0.92 0.07 0.01
Matches are distributed among these distances:
540 38 0.04
541 553 0.61
542 315 0.35
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.36
Consensus pattern (542 bp):
TTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATT
TGTAAAAGTTATAAAATTTGTCATCAAAGAATGATTTAGTAGAAATTGTGGGTTTTTATAGTTAT
GAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGCAAATTATTTTACAAGCTTAGGG
GCAAAAGTGTAAATATAATAAAATTTCGGGGTAATAATGTAATTTTTGCCATAGTATGATAAAAT
TTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTAGGC
CGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGGTTAAGCTTTCCAAGCTCCATAGTAAGTCCG
TTCTTGCCCCGTTTTTAACGATTTTCACGTTTTTAAAATCTTTGTAAAATGATCTACCTATTTCT
ACCATTTATTGGAGTTATGATGAAGGTCTAAGGTTTGAACCATGCTATAAATTGTTCTATTTTGA
TGTTTAATGGTAGATTATGCAT
Found at i:16488581 original size:541 final size:542
Alignment explanation
Indices: 16487493--16489067 Score: 2814
Period size: 541 Copynumber: 2.9 Consensus size: 542
16487483 TTTGTAAAAC
* * *
16487493 CCATGGCTAGGGTTTTCGCTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCG-TTTTA
1 CCATGGCTAGGGTTTTCGTTAATCTTTCCAAGCTCGATAGTAAGTCCGTTCTTGCCCCGTTTTTA
* *
16487557 ATGATTTTCACGTTTTTGAAATCCTTGTAACATTATCTACCTATTTCTACCATTTATTTGAGTTA
66 ATGATTTTCACGTTTTTGAAATCCTTGTAACATTATCAACCTATTTCCACCATTTATTTGAGTTA
*
16487622 TGATGAAGGTTTAGGGTTTGAACCGTGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTA
131 TGATGAAGGTTTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTA
** * *
16487687 TGCATTTTTATGGTTTAAGAAACAACTTTTGTTAAGTGATTTTTAATGAAAATGCTAAAAAGGAC
196 TGCATTTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGAC
*
16487752 TAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTATGATTTAGTAGAAATTGTGGGTTTTTATA
261 TAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTATGATTCAGTAGAAATTGTGGGTTTTTATA
* *
16487817 GTTATGAAAGTGGTTCGACTAGGTTTAAGGTGAAAATAAATTGAATGAAAATTCTTTTACAAGCC
326 GTTATGAAAGTGGTTCGGCTAGGTTTAAGGTGAAAATAAATTGAATGAAAATTATTTTACAAGCC
**
16487882 TAGGTACAAAAGTGTAAATATGATAAAATTTAGGGGTAAAAATGTAATTTTTGCCATAGTATGAT
391 TAGGGGCAAAAGTGTAAATATGATAAAATTTAGGGGTAAAAATGTAATTTTTGCCATAGTATGAT
16487947 AAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCC
456 AAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCC
*
16488012 TCGGCTGAAAGTTTGAAGACCA
521 TCGGCCGAAAGTTTGAAGACCA
16488034 CCATGGCTAGGGTTTTCGTTAATCTTTCCAAGCTCGATAGTAAGTCCGTTCTTGCCCCGTTTTTA
1 CCATGGCTAGGGTTTTCGTTAATCTTTCCAAGCTCGATAGTAAGTCCGTTCTTGCCCCGTTTTTA
16488099 ATGATTTTCACGTTTTTGAAATCCTTGTAACATTATCAACCTATTTCCACCATTTATTTGAGTTA
66 ATGATTTTCACGTTTTTGAAATCCTTGTAACATTATCAACCTATTTCCACCATTTATTTGAGTTA
* *
16488164 TGATGAAGGTTTAGGGTTTGAATCATGTTATAAATTTGTGTAATTTGATGTTTAATGGTAGATTA
131 TGATGAAGGTTTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTA
*
16488229 TGCATTTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGTTAAAAAGGAC
196 TGCATTTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGAC
* * *
16488294 TAATTTGTAAAAATTATAAAATTTGTCATAAAAGTATGGTTCAGTAGAAATTGTGGGTTTTTAGA
261 TAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTATGATTCAGTAGAAATTGTGGGTTTTTATA
16488359 GTTATGAAAGTGGTTCGGCTAGGTTTAAGGTGAAAATAAATTGAATGAAAATTATTTTACAAGCC
326 GTTATGAAAGTGGTTCGGCTAGGTTTAAGGTGAAAATAAATTGAATGAAAATTATTTTACAAGCC
*
16488424 TAGGGGCAAAAGTGTAAA-ATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGAT
391 TAGGGGCAAAAGTGTAAATATGATAAAATTTAGGGGTAAAAATGTAATTTTTGCCATAGTATGAT
*
16488488 AAAATTTAGTAATTAAATGTTTAAATAAACGAAATAAAAGCCAAATTTTGGTCATCTTCAACCCC
456 AAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCC
16488553 TCGGCCGAAAGTTTGAAGACCA
521 TCGGCCGAAAGTTTGAAGACCA
16488575 CCATGGCTAGGGTTTTCGTTAATCTTTCCAAGCTCGATAGTAAGTCCGTTCTTGCCCCGTTTTTA
1 CCATGGCTAGGGTTTTCGTTAATCTTTCCAAGCTCGATAGTAAGTCCGTTCTTGCCCCGTTTTTA
16488640 ATGATTTTCACGTTTTTGAAATCCTTGTAACATTATCAACCTATTTCCACCATTTATTTGAGTTA
66 ATGATTTTCACGTTTTTGAAATCCTTGTAACATTATCAACCTATTTCCACCATTTATTTGAGTTA
* *
16488705 TGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTCTGTATTTTGATGTTTAATGGTAGATTA
131 TGATGAAGGTTTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTA
16488770 TGCATTTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGAC
196 TGCATTTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGAC
* * *
16488835 TATTTTGTAAAAGTTATAAAAATTGTCATAAAAGTATGATTCAGTAGAAATTGTGGGTTTTTTTA
261 TAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTATGATTCAGTAGAAATTGTGGGTTTTTATA
* *
16488900 GTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTACAAGCT
326 GTTATGAAAGTGGTTCGGCTAGGTTTAAGGTGAAAATAAATTGAATGAAAATTATTTTACAAGCC
* * *
16488965 TAGGGGCAAAAGTGTAAATATTATAAAATTTCA-GGGTAAAAATGTATTTTTTGCCATAGTATGC
391 TAGGGGCAAAAGTGTAAATATGATAAAATTT-AGGGGTAAAAATGTAATTTTTGCCATAGTATGA
16489029 TAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAA
455 TAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAA
16489068 TGTGACAGCC
Statistics
Matches: 989, Mismatches: 42, Indels: 5
0.95 0.04 0.00
Matches are distributed among these distances:
541 581 0.59
542 407 0.41
543 1 0.00
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.37
Consensus pattern (542 bp):
CCATGGCTAGGGTTTTCGTTAATCTTTCCAAGCTCGATAGTAAGTCCGTTCTTGCCCCGTTTTTA
ATGATTTTCACGTTTTTGAAATCCTTGTAACATTATCAACCTATTTCCACCATTTATTTGAGTTA
TGATGAAGGTTTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTA
TGCATTTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGAC
TAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTATGATTCAGTAGAAATTGTGGGTTTTTATA
GTTATGAAAGTGGTTCGGCTAGGTTTAAGGTGAAAATAAATTGAATGAAAATTATTTTACAAGCC
TAGGGGCAAAAGTGTAAATATGATAAAATTTAGGGGTAAAAATGTAATTTTTGCCATAGTATGAT
AAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCC
TCGGCCGAAAGTTTGAAGACCA
Found at i:16491408 original size:40 final size:40
Alignment explanation
Indices: 16491353--16492260 Score: 1762
Period size: 40 Copynumber: 22.7 Consensus size: 40
16491343 GAGCATTGGA
16491353 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
16491393 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
16491433 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
16491473 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
16491513 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
16491553 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
16491593 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
16491633 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
16491673 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
16491713 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
16491753 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
16491793 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
16491833 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
16491873 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
16491913 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
16491953 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
16491993 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
16492033 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
16492073 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
16492113 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
16492153 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
16492193 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
16492233 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
16492261 ATGTGTTTGC
Statistics
Matches: 859, Mismatches: 9, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 859 1.00
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:16495039 original size:541 final size:542
Alignment explanation
Indices: 16493637--16496067 Score: 3649
Period size: 541 Copynumber: 4.4 Consensus size: 542
16493627 GGGGTGTTAC
* *
16493637 AATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAAGTTTGAAGACCCCCATGGCCAG
1 AATAAAAGCCAAATTTTGGTCATCTTCAACCCCTAGGCCGAAAGTTTGAAGACCACCATGGCCAG
16493702 GGTTTTCGTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCA
66 GGTTTTCGTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCA
16493767 CGTTTTTGAAATCCTTGTAACATTATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGT
131 CGTTTTTGAAATCCTTGTAACATTATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGT
*
16493832 TTAGGGTTTGAACCGTGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATTTTTA
196 TTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATTTTTA
16493897 TGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAA
261 TGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAA
16493962 AAGTTATAAAATTTGTCATAAAAGTATGATTTAGTAGAAATTGTGGGTTTTTATAGTTATGAAAG
326 AAGTTATAAAATTTGTCATAAAAGTATGATTTAGTAGAAATTGTGGGTTTTTATAGTTATGAAAG
16494027 TGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTCTTTTACAAGCCTAGGGGCAAA
391 TGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTCTTTTACAAGCCTAGGGGCAAA
16494092 AGTGTAAATATGATAAAATTTAGGGGTAAAATTGTAATTTTTGCCATAGTATGATAAAATTTAGT
456 AGTGTAAATATGATAAAATTTAGGGGTAAAATTGTAATTTTTGCCATAGTATGATAAAATTTAGT
16494157 AATTAAATGTTTAAATAAACAA
521 AATTAAATGTTTAAATAAACAA
* *
16494179 AATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAAGTTTGAAGACCCCCATGGCCAG
1 AATAAAAGCCAAATTTTGGTCATCTTCAACCCCTAGGCCGAAAGTTTGAAGACCACCATGGCCAG
*
16494244 GGTTTTCGTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGCTTTTAATGATTTTCA
66 GGTTTTCGTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCA
16494309 CGTTTTTGAAATCCTTGTAACATTATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGT
131 CGTTTTTGAAATCCTTGTAACATTATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGT
*
16494374 TTAGGGTTTGAACCGTGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATTTTTA
196 TTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATTTTTA
*
16494439 TGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGAACTAATTTGTAA
261 TGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAA
*
16494504 AAGTTATAAAATTTGTCATAAATGTATGATTTAGTAGAAATTGTGGGTTTTTATAGTTATGAAAG
326 AAGTTATAAAATTTGTCATAAAAGTATGATTTAGTAGAAATTGTGGGTTTTTATAGTTATGAAAG
16494569 TGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTCTTTTACAAGCCTAGGGGCAAA
391 TGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTCTTTTACAAGCCTAGGGGCAAA
* *
16494634 AGTGTAAATATGATAAAATTTAGGGGTAAAAATGTAATTTTTGCCATAGTATGATAAATTTTAGT
456 AGTGTAAATATGATAAAATTTAGGGGTAAAATTGTAATTTTTGCCATAGTATGATAAAATTTAGT
*
16494699 AAGTAAATGTTTAAATAAACAA
521 AATTAAATGTTTAAATAAACAA
* *
16494721 AATAAAAGCC-AATTTTGGTCATCTTCAACCCCTAGGTCGAAAGTTTGAAGACCACCATGGCTAG
1 AATAAAAGCCAAATTTTGGTCATCTTCAACCCCTAGGCCGAAAGTTTGAAGACCACCATGGCCAG
16494785 GGTTTTCGTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCA
66 GGTTTTCGTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCA
* * *
16494850 TGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGGAGGT
131 CGTTTTTGAAATCCTTGTAACATTATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGT
* *
16494915 CTT-GGGTTTGAACTATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTT
196 -TTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATTTTT
16494979 ATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTA
260 ATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTA
16495044 AAAGTTATAAAATTTGTCATAAAAGTATGATTTAGTAGAAATTGTGGGTTTTTATAGTTATGAAA
325 AAAGTTATAAAATTTGTCATAAAAGTATGATTTAGTAGAAATTGTGGGTTTTTATAGTTATGAAA
*
16495109 GTGGTTCAGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTCTTTTACAAGCCTAGGGGCAA
390 GTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTCTTTTACAAGCCTAGGGGCAA
*
16495174 AAGTGTAAATATGATAAAATTTAGGGGTAAAATTATAATATTTT-CCATAGTATGATAAAATTTA
455 AAGTGTAAATATGATAAAATTTAGGGGTAAAATTGTAAT-TTTTGCCATAGTATGATAAAATTTA
16495238 GTAATTAAATGTTTAAATAAACAA
519 GTAATTAAATGTTTAAATAAACAA
* *
16495262 AATAAAAGCCAAATTTT-GTCATCTTCAACCCCTAGGTCGAAAGTTTGAAGACCACCATGGCTAG
1 AATAAAAGCCAAATTTTGGTCATCTTCAACCCCTAGGCCGAAAGTTTGAAGACCACCATGGCCAG
16495326 GGTTTTCGTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCA
66 GGTTTTCGTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCA
*
16495391 CATTTTTGAAATCCTTGTAACATTATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGT
131 CGTTTTTGAAATCCTTGTAACATTATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGT
*
16495456 CTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATTTTTA
196 TTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATTTTTA
*
16495521 TGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAATTTCGGGGTAAAAAT
261 TGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAA-----AGG-----A-
* ** * * * * * * * ** *** *
16495586 GTAATTTTTGCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACA-AAATAAAAGCC
315 CTAA--TTTGTAAAAGT-T-ATAAAATTT-GTCA-TAAAAGTATGATTTAGTAGAAAT-TGTG-G
*** * * ** **** * * * *** ** ** ** **
16495650 AAATTT-TGGTCATCTTCAA-CCCCTCGGCCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTCG
372 GTTTTTATAGT--TATGAAAGTGGTTCGG-C-TAGGCTT-AAGGTGAAAAT--AAATTG-AAT-G
** * * * ** * * * *
16495713 TTAA-GC-TTTCCAAGCTCCA-TAGTAAGTAAGTGATTTTCAATGAAAATGCTAAAATTTCGGGG
428 AAAATTCTTTTACAAGC-CTAGGGGCAA--AAGTG----T--A--AATATGATAAAATTTAGGGG
*
16495775 TAAAAATGTAATTTTTGCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAA
482 TAAAATTGTAATTTTTGCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAA
* * * *
16495836 AATAAAAGCCAAATTTTGGTCATCTTCAACCCCTTGGCCGAAAGTTTGAAGACCACTATGGCTAT
1 AATAAAAGCCAAATTTTGGTCATCTTCAACCCCTAGGCCGAAAGTTTGAAGACCACCATGGCCAG
*
16495901 GGTTTTCGTTAAGCTTTCCAAGCTCCATAGTAAGTTCGTTCTTGCCCCGTTTTTAATGATTTTCA
66 GGTTTTCGTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCA
*
16495966 CGTTTTTGAAATCCTTGTAACATTATCTACCTATGTCTACCATTTATTTGAGTTATGATGAAGGT
131 CGTTTTTGAAATCCTTGTAACATTATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGT
*
16496031 CTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTG
196 TTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTG
16496068 TACATTCATG
Statistics
Matches: 1750, Mismatches: 94, Indels: 57
0.92 0.05 0.03
Matches are distributed among these distances:
540 1 0.00
541 798 0.46
542 558 0.32
546 2 0.00
551 1 0.00
552 3 0.00
554 8 0.00
555 1 0.00
556 9 0.01
557 7 0.00
558 15 0.01
559 6 0.00
560 5 0.00
561 4 0.00
562 6 0.00
564 13 0.01
565 4 0.00
566 8 0.00
570 1 0.00
572 1 0.00
573 4 0.00
574 88 0.05
575 207 0.12
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (542 bp):
AATAAAAGCCAAATTTTGGTCATCTTCAACCCCTAGGCCGAAAGTTTGAAGACCACCATGGCCAG
GGTTTTCGTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCA
CGTTTTTGAAATCCTTGTAACATTATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGT
TTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATTTTTA
TGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAA
AAGTTATAAAATTTGTCATAAAAGTATGATTTAGTAGAAATTGTGGGTTTTTATAGTTATGAAAG
TGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTCTTTTACAAGCCTAGGGGCAAA
AGTGTAAATATGATAAAATTTAGGGGTAAAATTGTAATTTTTGCCATAGTATGATAAAATTTAGT
AATTAAATGTTTAAATAAACAA
Found at i:16495877 original size:196 final size:196
Alignment explanation
Indices: 16495543--16495935 Score: 759
Period size: 196 Copynumber: 2.0 Consensus size: 196
16495533 CAACTTTTGC
16495543 TAAGTGATTTTCAATGAAAATGCTAAAATTTCGGGGTAAAAATGTAATTTTTGCCATAGTATGAT
1 TAAGTGATTTTCAATGAAAATGCTAAAATTTCGGGGTAAAAATGTAATTTTTGCCATAGTATGAT
16495608 AAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCC
66 AAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCC
16495673 TCGGCCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTCGTTAAGCTTTCCAAGCTCCATAGTAA
131 TCGGCCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTCGTTAAGCTTTCCAAGCTCCATAGTAA
16495738 G
196 G
16495739 TAAGTGATTTTCAATGAAAATGCTAAAATTTCGGGGTAAAAATGTAATTTTTGCCATAGTATGAT
1 TAAGTGATTTTCAATGAAAATGCTAAAATTTCGGGGTAAAAATGTAATTTTTGCCATAGTATGAT
16495804 AAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCC
66 AAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCC
* * *
16495869 TTGGCCGAAAGTTTGAAGACCACTATGGCTATGGTTTTCGTTAAGCTTTCCAAGCTCCATAGTAA
131 TCGGCCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTCGTTAAGCTTTCCAAGCTCCATAGTAA
16495934 G
196 G
16495935 T
1 T
16495936 TCGTTCTTGC
Statistics
Matches: 194, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
196 194 1.00
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.33
Consensus pattern (196 bp):
TAAGTGATTTTCAATGAAAATGCTAAAATTTCGGGGTAAAAATGTAATTTTTGCCATAGTATGAT
AAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCC
TCGGCCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTCGTTAAGCTTTCCAAGCTCCATAGTAA
G
Found at i:16496736 original size:12 final size:12
Alignment explanation
Indices: 16496719--16496783 Score: 71
Period size: 12 Copynumber: 5.4 Consensus size: 12
16496709 AATTGGTCAT
16496719 GGAGGGATTGTA
1 GGAGGGATTGTA
16496731 GGAGGGATTGTA
1 GGAGGGATTGTA
16496743 GGAGGGAGTTG-A
1 GGAGGGA-TTGTA
*
16496755 GGAGAGATATG-A
1 GGAGGGAT-TGTA
* *
16496767 GGAGAGATTTTA
1 GGAGGGATTGTA
16496779 GGAGG
1 GGAGG
16496784 AAATTGTGGA
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
11 2 0.04
12 42 0.89
13 3 0.06
ACGTcount: A:0.29, C:0.00, G:0.49, T:0.22
Consensus pattern (12 bp):
GGAGGGATTGTA
Found at i:16498270 original size:19 final size:19
Alignment explanation
Indices: 16498246--16498291 Score: 92
Period size: 19 Copynumber: 2.4 Consensus size: 19
16498236 TGTGGGCCCA
16498246 CTTGGGCCTCAAAATGGGC
1 CTTGGGCCTCAAAATGGGC
16498265 CTTGGGCCTCAAAATGGGC
1 CTTGGGCCTCAAAATGGGC
16498284 CTTGGGCC
1 CTTGGGCC
16498292 CATTTACACT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.17, C:0.28, G:0.33, T:0.22
Consensus pattern (19 bp):
CTTGGGCCTCAAAATGGGC
Found at i:16498456 original size:27 final size:27
Alignment explanation
Indices: 16498403--16498456 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
16498393 ATGACCAAAA
* **
16498403 TACCCCTATAGGGTAAAATGATTATTT
1 TACCCCTAGAGGGTAAAATGAAGATTT
16498430 TACCCCTAGAGGGT-AAATGACAGATTT
1 TACCCCTAGAGGGTAAAATGA-AGATTT
16498457 GTGTTGCGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 6 0.26
27 17 0.74
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (27 bp):
TACCCCTAGAGGGTAAAATGAAGATTT
Found at i:16504652 original size:68 final size:68
Alignment explanation
Indices: 16504529--16504926 Score: 483
Period size: 68 Copynumber: 5.9 Consensus size: 68
16504519 GGTTTAATGA
* ** * *** ** *
16504529 GTAAGACCATAGCTTGATTATGGCAACCAATAGAGTCCAATAGGACATTAAACATGTGGTTACAA
1 GTAAGACCATAGCTCGGCTATGACAACCAATAGAGTCCTCCAGGATGTTAAACATGGGGTTACAA
*
16504594 AGT
66 GGT
* * *
16504597 GTAAGACCATAGCTCGGCTATGACAACAAATAAAGTGCTCCAGGATGTTAAACATGGGGTTACAA
1 GTAAGACCATAGCTCGGCTATGACAACCAATAGAGTCCTCCAGGATGTTAAACATGGGGTTACAA
16504662 GGT
66 GGT
* * *
16504665 GTAAGACCATAGCTCGGCTATGGCAACCAATAGAGTCCGCCAAGATGTTAAACATGGGGTTACAA
1 GTAAGACCATAGCTCGGCTATGACAACCAATAGAGTCCTCCAGGATGTTAAACATGGGGTTACAA
16504730 GGT
66 GGT
* * * * * *
16504733 GTAAGTCCACAGCTCGGTTAT-AGCAACCAATAGAGTCTTCCAGGAAGTTAAACATGAGGTTACA
1 GTAAGACCATAGCTCGGCTATGA-CAACCAATAGAGTCCTCCAGGATGTTAAACATGGGGTTACA
16504797 AGGT
65 AGGT
* ** * *
16504801 GTAAGACCACAGCTCGATTATGACAACCAATAAAGTCCTTCAGGATGTTAAACATGGGGTTACAA
1 GTAAGACCATAGCTCGGCTATGACAACCAATAGAGTCCTCCAGGATGTTAAACATGGGGTTACAA
16504866 GGT
66 GGT
* * * * *
16504869 GTAAGACCATAGCTCGACTATGACAACCAATAGAGTCCACCAGAACGTTAATCATGGG
1 GTAAGACCATAGCTCGGCTATGACAACCAATAGAGTCCTCCAGGATGTTAAACATGGG
16504927 TTCAAACTAT
Statistics
Matches: 284, Mismatches: 44, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
68 283 1.00
69 1 0.00
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.22
Consensus pattern (68 bp):
GTAAGACCATAGCTCGGCTATGACAACCAATAGAGTCCTCCAGGATGTTAAACATGGGGTTACAA
GGT
Found at i:16507463 original size:48 final size:48
Alignment explanation
Indices: 16507388--16507616 Score: 227
Period size: 48 Copynumber: 4.9 Consensus size: 48
16507378 TACATGGTAG
** * *
16507388 GATGCCAATTTCATATCCCAGATATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* * ** *
16507436 GATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCATAGGTT
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* * *
16507484 GATGCCAATGCCATGTCCCCGACACGGTCTTAGATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* * * ** **
16507532 GATGCCGAT--CA---CCTAG-CTATGGTCTTACACGAAATTGCATATC
1 GATGCCAATGCCATGTCCCAGAC-ATGGTCTTACATGGGATCACATATC
*
16507575 GATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATCA
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
16507617 TACATAACCC
Statistics
Matches: 139, Mismatches: 35, Indels: 14
0.74 0.19 0.07
Matches are distributed among these distances:
42 1 0.01
43 28 0.20
45 2 0.01
46 2 0.01
48 105 0.76
49 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
Found at i:16509528 original size:29 final size:29
Alignment explanation
Indices: 16509495--16509551 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
16509485 AAAAAAGGCC
* *
16509495 CATTTACAACATTATTTACGGAAATGGGT
1 CATTTAAAACATTATTTACAGAAATGGGT
*
16509524 CATTTAAAACATTATTTATAGAAATGGG
1 CATTTAAAACATTATTTACAGAAATGGG
16509552 CCAAAAGCCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.35
Consensus pattern (29 bp):
CATTTAAAACATTATTTACAGAAATGGGT
Found at i:16510664 original size:20 final size:20
Alignment explanation
Indices: 16510639--16510678 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
16510629 CGCTACCTTA
16510639 GGACCGTTATAGTTATGGTC
1 GGACCGTTATAGTTATGGTC
16510659 GGACCGTTATAGTTATGGTC
1 GGACCGTTATAGTTATGGTC
16510679 ATCATTCACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.15, G:0.30, T:0.35
Consensus pattern (20 bp):
GGACCGTTATAGTTATGGTC
Found at i:16513426 original size:66 final size:66
Alignment explanation
Indices: 16513308--16513438 Score: 183
Period size: 66 Copynumber: 2.0 Consensus size: 66
16513298 TTATTGCATT
* * * *
16513308 AATGTCATTGCATGAGTTAATTCCATATTGCGTCCAGAATTGTCGCCGCACCTAACAGATGTCCG
1 AATGTCACTGCATGAGTTAATTCCATATTGCATCCAGAATTGTCGACACACCTAACAGATGTCCG
16513373 C
66 C
* * *
16513374 AATGTCACTGCATG-GTTTAATTCCATATTGCATCCAGAATTGTCGATACACCTGACAGCTGTCC
1 AATGTCACTGCATGAG-TTAATTCCATATTGCATCCAGAATTGTCGACACACCTAACAGATGTCC
16513438 G
65 G
16513439 AATAAGAACC
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
65 1 0.02
66 56 0.98
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (66 bp):
AATGTCACTGCATGAGTTAATTCCATATTGCATCCAGAATTGTCGACACACCTAACAGATGTCCG
C
Found at i:16515212 original size:313 final size:313
Alignment explanation
Indices: 16514643--16515266 Score: 923
Period size: 313 Copynumber: 2.0 Consensus size: 313
16514633 CAGAAATTGA
* * *
16514643 AAGGACTTTTCGGAATAGACTTCAAGAACAAAGAAATATGACTTTACTAGGGAACAATGCAGCCA
1 AAGGACTTTTCAGAATAGACTTCAAGAACAAAGAAATAAGACTTTACTAGGGAACAATACAGCCA
* *
16514708 TACCCTCAATGCAACAACAAAATGTTAATAACCCATTGTTCCCACAAGATGTCCGCATACAAAAT
66 TACCCCCAATGCAACAACAAAATGTTAATAACCCATTGTTACCACAAGATGTCCGCATACAAAAT
16514773 AGGACTATACGAGATTTTGTAGTACATGTCTTGGATGATTTGCAATCAGGAGTCGTTAGGCTAGC
131 AGGACTATACGAGATTTTGTAGTACATGTCTTGGATGATTTGCAATCAGGAGTCGTTAGGCTAGC
* * * * *
16514838 AATCCAAGCTAGGAATTTTGAACTCAAGCCAGTAATGTTTCAAATGCTAAATTCTAATGGACAAT
196 AACCCAAGCTAGGAATTTCGAACTCAAGACAGCAATGTTTCAAATGCTAAATTCCAATGGACAAT
*
16514903 ATGCTGGACTGCCACTTGAAGATACGAGAGAACATCTTAAATCCTTTTTATGG
261 ATGCTGGACTGCCACATGAAGATACGAGAGAACATCTTAAATCCTTTTTATGG
* ** * *
16514956 AAGGACTTTTCAGAGTAGACTTTGAGAACAAAGAAATACAG-CTTTACTATGGG-ACAATATAGT
1 AAGGACTTTTCAGAATAGACTTCAAGAACAAAGAAATA-AGACTTTACTA-GGGAACAATACAGC
* * *
16515019 CATACCCCCGATGCAATAACAAAATGTTAATAACCCATTGTTACCGCAAGATG-CTCGCATACAA
64 CATACCCCCAATGCAACAACAAAATGTTAATAACCCATTGTTACCACAAGATGTC-CGCATACAA
* * * *
16515083 GATAGGACTATACGATATTTTGTAGTACTTGTCTTGGATGATTTGCAA-CTAGGAGTTGTTAGGC
128 AATAGGACTATACGAGATTTTGTAGTACATGTCTTGGATGATTTGCAATC-AGGAGTCGTTAGGC
* * *
16515147 TAGCAACCCAAGTTGGGAATTTCGAACTCAAGATAGCAATGTTTCAAATGCTAAATTCCAATGGA
192 TAGCAACCCAAGCTAGGAATTTCGAACTCAAGACAGCAATGTTTCAAATGCTAAATTCCAATGGA
* * *
16515212 CAATATGTTGGACTGCCACATGAAGATGCGAGAGAACATCTTAAATCTTTTTTAT
257 CAATATGCTGGACTGCCACATGAAGATACGAGAGAACATCTTAAATCCTTTTTAT
16515267 TGATCTGTGT
Statistics
Matches: 278, Mismatches: 29, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
312 2 0.01
313 272 0.98
314 4 0.01
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (313 bp):
AAGGACTTTTCAGAATAGACTTCAAGAACAAAGAAATAAGACTTTACTAGGGAACAATACAGCCA
TACCCCCAATGCAACAACAAAATGTTAATAACCCATTGTTACCACAAGATGTCCGCATACAAAAT
AGGACTATACGAGATTTTGTAGTACATGTCTTGGATGATTTGCAATCAGGAGTCGTTAGGCTAGC
AACCCAAGCTAGGAATTTCGAACTCAAGACAGCAATGTTTCAAATGCTAAATTCCAATGGACAAT
ATGCTGGACTGCCACATGAAGATACGAGAGAACATCTTAAATCCTTTTTATGG
Found at i:16522556 original size:11 final size:11
Alignment explanation
Indices: 16522540--16522569 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
16522530 ACCTCCATGA
16522540 TTAACCCCTAG
1 TTAACCCCTAG
16522551 TTAACCCCTAG
1 TTAACCCCTAG
*
16522562 TAAACCCC
1 TTAACCCC
16522570 CTTGAGCCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.30, C:0.40, G:0.07, T:0.23
Consensus pattern (11 bp):
TTAACCCCTAG
Found at i:16524076 original size:29 final size:29
Alignment explanation
Indices: 16524004--16524171 Score: 99
Period size: 27 Copynumber: 6.1 Consensus size: 29
16523994 GTAAATCTAC
16524004 AAACCAAGGGTATTT-TAGTAATTTTGTA
1 AAACCAAGGGTATTTCTAGTAATTTTGTA
* *
16524032 AAACCAATGGTGTTTCTA-TAATTTT-TA
1 AAACCAAGGGTATTTCTAGTAATTTTGTA
* *
16524059 GAAAGTCAAGGGTATTTCT-GTAACTTTGT-
1 -AAA-CCAAGGGTATTTCTAGTAATTTTGTA
* * *
16524088 AAATCAGGGGTATTT-TGGTAA-TTT-TA
1 AAACCAAGGGTATTTCTAGTAATTTTGTA
*** *
16524114 CAAATTGAGGGTATTTC-AGTAA-TTT-CA
1 -AAACCAAGGGTATTTCTAGTAATTTTGTA
* *
16524141 CAAACCAAGGGTATTT-TGGTAATTTTATA
1 -AAACCAAGGGTATTTCTAGTAATTTTGTA
16524170 AA
1 AA
16524172 TCGAGGGTAA
Statistics
Matches: 111, Mismatches: 17, Indels: 24
0.73 0.11 0.16
Matches are distributed among these distances:
25 1 0.01
26 4 0.04
27 54 0.49
28 31 0.28
29 20 0.18
30 1 0.01
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.39
Consensus pattern (29 bp):
AAACCAAGGGTATTTCTAGTAATTTTGTA
Found at i:16524191 original size:54 final size:55
Alignment explanation
Indices: 16524095--16524238 Score: 141
Period size: 54 Copynumber: 2.7 Consensus size: 55
16524085 TGTAAATCAG
* * ** *
16524095 GGGTATTTTGGTAATTTTACAAATTGAGGGT-ATTTCAGTAATT-TCACAAACCAA
1 GGGTATTTTGGTAATTTTATAAATCGAGGGTAAAATCAATAATTCT-ACAAACCAA
** *
16524149 GGGTATTTTGGTAATTTTATAAATCGAGGGTAAAAT-AATAATTCTGTAAATCAA
1 GGGTATTTTGGTAATTTTATAAATCGAGGGTAAAATCAATAATTCTACAAACCAA
*** * *
16524203 GGGTAAAATAGTAATTCTATAAATCGAGGGTAAAAT
1 GGGTATTTTGGTAATTTTATAAATCGAGGGTAAAAT
16524239 GGTAATTCTA
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
54 72 0.96
55 3 0.04
ACGTcount: A:0.38, C:0.08, G:0.19, T:0.35
Consensus pattern (55 bp):
GGGTATTTTGGTAATTTTATAAATCGAGGGTAAAATCAATAATTCTACAAACCAA
Found at i:16524206 original size:81 final size:80
Alignment explanation
Indices: 16524131--16524290 Score: 187
Period size: 81 Copynumber: 2.0 Consensus size: 80
16524121 AGGGTATTTC
*** * *
16524131 AGTAATT-TCACAAACCAAGGGTATTTTGGTAATTTTATAAATCGAGGGTAAAATAATAATTCTG
1 AGTAATTCT-ACAAACCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACAATAATTCTG
16524195 TAAATCAAGGGTAAAAT
65 TAAATCAAGGGT-AAAT
* * * * * *
16524212 AGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACAGTAATTTTGT
1 AGTAATTCTACAAACCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACAATAATTCTGT
*
16524277 AAATCGAGGGTAAA
66 AAATCAAGGGTAAA
16524291 ACGGTAATTA
Statistics
Matches: 66, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
80 3 0.05
81 62 0.94
82 1 0.02
ACGTcount: A:0.42, C:0.07, G:0.19, T:0.31
Consensus pattern (80 bp):
AGTAATTCTACAAACCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACAATAATTCTGT
AAATCAAGGGTAAAT
Found at i:16524291 original size:81 final size:81
Alignment explanation
Indices: 16524157--16524342 Score: 221
Period size: 81 Copynumber: 2.3 Consensus size: 81
16524147 AAGGGTATTT
* * * *
16524157 TGGTAATTTTATAAATCGAGGGTAAAATAATAATTCTGTAAATCAAGGGTAAAATAGTAATTCTA
1 TGGTAATTCTATAAATCGAGGGTAAAACAATAATTCTGTAAATCAAGGGTAAAACAGTAATTATA
16524222 TAAATCGAGGG-TAAAA
66 TAAATCG-GGGTTAAAA
* * * * * *
16524238 TGGTAATTCTATAAATTGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTATG
1 TGGTAATTCTATAAATCGAGGGTAAAACAATAATTCTGTAAATCAAGGGTAAAACAGTAATTATA
16524303 TAAATCGGGGTTAAAA
66 TAAATCGGGGTTAAAA
* * * * *
16524319 CGATAATTATGTAAATCGGGGGTA
1 TGGTAATTCTATAAATCGAGGGTA
16524343 CTTTGGTAAT
Statistics
Matches: 88, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
80 3 0.03
81 85 0.97
ACGTcount: A:0.41, C:0.06, G:0.22, T:0.31
Consensus pattern (81 bp):
TGGTAATTCTATAAATCGAGGGTAAAACAATAATTCTGTAAATCAAGGGTAAAACAGTAATTATA
TAAATCGGGGTTAAAA
Found at i:16524319 original size:27 final size:27
Alignment explanation
Indices: 16524158--16524342 Score: 192
Period size: 27 Copynumber: 6.9 Consensus size: 27
16524148 AGGGTATTTT
* * *
16524158 GGTAATTTTATAAATCGAGGGTAAAAT
1 GGTAATTCTGTAAATCGAGGGTAAAAC
** * *
16524185 AATAATTCTGTAAATCAAGGGTAAAAT
1 GGTAATTCTGTAAATCGAGGGTAAAAC
* * *
16524212 AGTAATTCTATAAATCGAGGGTAAAAT
1 GGTAATTCTGTAAATCGAGGGTAAAAC
* *
16524239 GGTAATTCTATAAATTGAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAAC
* *
16524266 AGTAATTTTGTAAATCGAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAAC
*
16524293 GGTAATTATGTAAATCG-GGGTTAAAAC
1 GGTAATTCTGTAAATCGAGGG-TAAAAC
* * *
16524320 GATAATTATGTAAATCGGGGGTA
1 GGTAATTCTGTAAATCGAGGGTA
16524343 CTTTGGTAAT
Statistics
Matches: 138, Mismatches: 18, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
26 3 0.02
27 132 0.96
28 3 0.02
ACGTcount: A:0.41, C:0.06, G:0.22, T:0.30
Consensus pattern (27 bp):
GGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:16535978 original size:27 final size:27
Alignment explanation
Indices: 16535947--16536051 Score: 133
Period size: 27 Copynumber: 3.9 Consensus size: 27
16535937 CTGCCAGAAT
* *
16535947 AGATAATGTGACAGAGTCACCAGATAC
1 AGATAATGTGGCAGAGCCACCAGATAC
16535974 AGATAATCGTGGCAGAGCCACCAGA-AC
1 AGATAAT-GTGGCAGAGCCACCAGATAC
*
16536001 AGAAATATGTGGCAGAGCCACCAGAT-C
1 AGATA-ATGTGGCAGAGCCACCAGATAC
*
16536028 AGATAATTGTGGCATAGCCACCAG
1 AGATAA-TGTGGCAGAGCCACCAG
16536052 GACGCTTCCT
Statistics
Matches: 69, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
26 1 0.01
27 51 0.74
28 17 0.25
ACGTcount: A:0.37, C:0.22, G:0.25, T:0.16
Consensus pattern (27 bp):
AGATAATGTGGCAGAGCCACCAGATAC
Found at i:16536633 original size:40 final size:40
Alignment explanation
Indices: 16536578--16536658 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
16536568 CGAACTACCT
16536578 ACAATTAAATCACTAACATATTACTCTAGATATCAAATTA
1 ACAATTAAATCACTAACATATTACTCTAGATATCAAATTA
16536618 ACAATTAAATCACTAACATATTACTCTAGATATCAAATTA
1 ACAATTAAATCACTAACATATTACTCTAGATATCAAATTA
16536658 A
1 A
16536659 TACTGAGTAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.48, C:0.17, G:0.02, T:0.32
Consensus pattern (40 bp):
ACAATTAAATCACTAACATATTACTCTAGATATCAAATTA
Found at i:16536652 original size:23 final size:23
Alignment explanation
Indices: 16536586--16536652 Score: 56
Period size: 20 Copynumber: 3.2 Consensus size: 23
16536576 CTACAATTAA
16536586 ATCACTAACATATTACTCTAGAT
1 ATCACTAACATATTACTCTAGAT
* ** *
16536609 ATCA--AA-TTAACAAT-TA-A-
1 ATCACTAACATATTACTCTAGAT
16536626 ATCACTAACATATTACTCTAGAT
1 ATCACTAACATATTACTCTAGAT
16536649 ATCA
1 ATCA
16536653 AATTAATACT
Statistics
Matches: 30, Mismatches: 8, Indels: 12
0.60 0.16 0.24
Matches are distributed among these distances:
17 4 0.13
18 1 0.03
19 4 0.13
20 8 0.27
21 4 0.13
22 1 0.03
23 8 0.27
ACGTcount: A:0.45, C:0.19, G:0.03, T:0.33
Consensus pattern (23 bp):
ATCACTAACATATTACTCTAGAT
Found at i:16541601 original size:20 final size:21
Alignment explanation
Indices: 16541567--16541606 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
16541557 ATTTGCCATT
*
16541567 TACAAATTTAGTAAATAATAA
1 TACAAATTTAGTAAAAAATAA
*
16541588 TACAATTTTA-TAAAAAATA
1 TACAAATTTAGTAAAAAATA
16541607 TATAAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.35
Consensus pattern (21 bp):
TACAAATTTAGTAAAAAATAA
Found at i:16541619 original size:12 final size:12
Alignment explanation
Indices: 16541596--16541642 Score: 60
Period size: 14 Copynumber: 3.8 Consensus size: 12
16541586 AATACAATTT
16541596 TATAAA-AAATA
1 TATAAATAAATA
16541607 TATAAATAAATA
1 TATAAATAAATA
16541619 TATAAAATAAAATA
1 TAT-AAAT-AAATA
16541633 TATAATATAA
1 TATAA-ATAA
16541643 TAATATTTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
11 6 0.19
12 8 0.25
13 8 0.25
14 10 0.31
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
TATAAATAAATA
Found at i:16541631 original size:14 final size:14
Alignment explanation
Indices: 16541601--16541675 Score: 73
Period size: 15 Copynumber: 5.3 Consensus size: 14
16541591 AATTTTATAA
16541601 AAAATATAT-AAAT
1 AAAATATATAAAAT
16541614 -AAATATATAAAAT
1 AAAATATATAAAAT
*
16541627 AAAATATATAATAT
1 AAAATATATAAAAT
* *
16541641 AATAATATTTATAGAT
1 AA-AATATATA-AAAT
*
16541657 AAAATATATGATAAT
1 AAAATATAT-AAAAT
16541672 AAAA
1 AAAA
16541676 AATAATGGAT
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
12 8 0.16
13 4 0.08
14 14 0.27
15 19 0.37
16 6 0.12
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (14 bp):
AAAATATATAAAAT
Found at i:16541653 original size:12 final size:12
Alignment explanation
Indices: 16541603--16541727 Score: 56
Period size: 13 Copynumber: 10.9 Consensus size: 12
16541593 TTTTATAAAA
16541603 AATATATA-AAT
1 AATATATATAAT
16541614 AA-ATATATAA-
1 AATATATATAAT
*
16541624 AATA-AAAT-AT
1 AATATATATAAT
16541634 -ATA-ATATAAT
1 AATATATATAAT
*
16541644 AATATTTATAGAT
1 AATATATATA-AT
* *
16541657 AAAATATATGAT
1 AATATATATAAT
*
16541669 AATA-A-AAAAT
1 AATATATATAAT
16541679 AATGGATA-ATAAT
1 AAT--ATATATAAT
*
16541692 AGTAATATATAACT
1 AAT-ATATATAA-T
* *
16541706 AATATTTA-AAA
1 AATATATATAAT
16541717 AATATATATAA
1 AATATATATAA
16541728 AGTATTTAAA
Statistics
Matches: 85, Mismatches: 16, Indels: 25
0.67 0.13 0.20
Matches are distributed among these distances:
9 7 0.08
10 18 0.21
11 16 0.19
12 17 0.20
13 24 0.28
14 3 0.04
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.34
Consensus pattern (12 bp):
AATATATATAAT
Found at i:16541677 original size:17 final size:17
Alignment explanation
Indices: 16541657--16541690 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
16541647 ATTTATAGAT
16541657 AAAATATAT-GATAATAA
1 AAAATA-ATGGATAATAA
16541674 AAAATAATGGATAATAA
1 AAAATAATGGATAATAA
16541691 TAGTAATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.12
17 14 0.88
ACGTcount: A:0.65, C:0.00, G:0.09, T:0.26
Consensus pattern (17 bp):
AAAATAATGGATAATAA
Found at i:16541710 original size:11 final size:11
Alignment explanation
Indices: 16541596--16541724 Score: 52
Period size: 11 Copynumber: 11.4 Consensus size: 11
16541586 AATACAATTT
*
16541596 TATAAAAAATA
1 TATAAATAATA
16541607 TATAAATAAATA
1 TATAAAT-AATA
16541619 TATAAAATAA-A
1 TAT-AAATAATA
*
16541630 -ATATATAATA
1 TATAAATAATA
*
16541640 TA-ATAAT-ATT
1 TATA-AATAATA
* *
16541650 TATAGATAAAA
1 TATAAATAATA
*
16541661 TATATGATAATA
1 TATA-AATAATA
*
16541673 -AAAAATAATGGA
1 TATAAATAAT--A
16541685 TAATAATAGTAATA
1 T-ATAA-A-TAATA
*
16541699 TATAACTAATA
1 TATAAATAATA
* *
16541710 TTTAAAAAATA
1 TATAAATAATA
16541721 TATA
1 TATA
16541725 TAAAGTATTT
Statistics
Matches: 88, Mismatches: 16, Indels: 28
0.67 0.12 0.21
Matches are distributed among these distances:
9 5 0.06
10 15 0.17
11 34 0.39
12 16 0.18
13 8 0.09
14 5 0.06
15 1 0.01
16 4 0.05
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.34
Consensus pattern (11 bp):
TATAAATAATA
Found at i:16543628 original size:206 final size:206
Alignment explanation
Indices: 16543269--16543824 Score: 898
Period size: 206 Copynumber: 2.7 Consensus size: 206
16543259 AAATCTGCTT
*
16543269 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGTGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * * * *
16543334 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATACCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTT
* * *
16543399 AGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
131 GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTACCCTCCATCGAATATG
16543464 GAGACGCCAAA
196 GAGACGCCAAA
* *
16543475 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAT
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * *
16543540 GTGAAAGCTAAATCAGCTATGAT-TTCAATTTGTTCCTTGTAAACACAAGGATGCCAAATCACCT
66 GTGAAAGCCAAATCAGCTATG-TCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCT
*
16543604 TGGATCTGCTTCAGTCTGATCATCTGAAGGTTAGATCTGCTATGTGTCTACCCTCCATCGAATAT
130 TGGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTACCCTCCATCGAATAT
16543669 GGAGACGCCAAA
195 GGAGACGCCAAA
* * * *
16543681 CTTCGATCTGCTCTCTGACAATACAGAAATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* *
16543746 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCATAAGGATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTT
16543811 GGATCTTGCTTCAG
131 GGATC-TGCTTCAG
16543825 CCAGATCTGC
Statistics
Matches: 321, Mismatches: 26, Indels: 5
0.91 0.07 0.01
Matches are distributed among these distances:
205 1 0.00
206 311 0.97
207 9 0.03
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (206 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTT
GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTACCCTCCATCGAATATG
GAGACGCCAAA
Found at i:16548564 original size:42 final size:41
Alignment explanation
Indices: 16548501--16548626 Score: 141
Period size: 42 Copynumber: 3.0 Consensus size: 41
16548491 CTTCGCTTTC
** * *
16548501 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAGCTATGGT-TTACACATATTCACAT-A
* *
16548544 T-GATGCCATAGCCTAGCTATGGTTTTACACATATTCATATA
1 TCGATGCCATAGCCCAGCTATGG-TTTACACATATTCACATA
16548585 TCGATGCCATAGCCCAGCTATGGTTTACACGA-A-TCACATA
1 TCGATGCCATAGCCCAGCTATGGTTTACAC-ATATTCACATA
16548625 TC
1 TC
16548627 TCACTGATGC
Statistics
Matches: 72, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
40 8 0.11
41 10 0.14
42 52 0.72
43 2 0.03
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (41 bp):
TCGATGCCATAGCCCAGCTATGGTTTACACATATTCACATA
Found at i:16548689 original size:47 final size:46
Alignment explanation
Indices: 16548586--16548708 Score: 149
Period size: 47 Copynumber: 2.7 Consensus size: 46
16548576 ATTCATATAT
* * * * *
16548586 CGATGCCATAGCCCAGCTATGGT-TTACACGAATCACATATCTCAC
1 CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
* * *
16548631 TGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACAC
1 CGATGCCATATCCCAGATATGGTCTTATAC-GAAGCACATATCACAC
*
16548678 CGATGCCATATCTCAGATATGGTCTTATACG
1 CGATGCCATATCCCAGATATGGTCTTATACG
16548709 GAAATCACTT
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
45 20 0.30
46 6 0.09
47 40 0.61
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.28
Consensus pattern (46 bp):
CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
Found at i:16548776 original size:31 final size:31
Alignment explanation
Indices: 16548733--16548910 Score: 221
Period size: 31 Copynumber: 5.7 Consensus size: 31
16548723 CTTGTCACTT
*
16548733 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * * * *
16548764 GTAACTGGAGCTATCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
**
16548795 GTAGCCGGGGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * *
16548826 GTAGCCAAAACTACCACTTTTCACTGATCAA
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
** *
16548857 GTAGCAAAATCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
16548888 GTAGCTGAAGCTACCACTTTTCA
1 GTAGCCGAAGCTACCACTTTTCA
16548911 ATTGTCATTT
Statistics
Matches: 125, Mismatches: 22, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 125 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:16549202 original size:31 final size:31
Alignment explanation
Indices: 16549167--16549241 Score: 123
Period size: 31 Copynumber: 2.4 Consensus size: 31
16549157 CAAGTTGAAA
*
16549167 CTACCACTTTTCACTGATCAAGTAGCAGAAT
1 CTACCACTTTTCACTGATCAAGTAGCAGAAG
* *
16549198 CTACCACTTTTCACTGATCAGGTAGCTGAAG
1 CTACCACTTTTCACTGATCAAGTAGCAGAAG
16549229 CTACCACTTTTCA
1 CTACCACTTTTCA
16549242 ATTGTCATTT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.28, C:0.28, G:0.13, T:0.31
Consensus pattern (31 bp):
CTACCACTTTTCACTGATCAAGTAGCAGAAG
Found at i:16549324 original size:31 final size:31
Alignment explanation
Indices: 16549278--16549447 Score: 169
Period size: 31 Copynumber: 5.5 Consensus size: 31
16549268 GTGTAGCCGA
* *
16549278 AGCTACCACTATTCACTGATCAGGTAACTGG
1 AGCTACCACTTTTCACTGATCAGGTAACCGG
* * *
16549309 AGCTATCATTTTTCACTGATCAGGTAGCCGG
1 AGCTACCACTTTTCACTGATCAGGTAACCGG
* * **
16549340 GGCTACCACTTTTCACTGATCAGGTAGCCAA
1 AGCTACCACTTTTCACTGATCAGGTAACCGG
* * * ***
16549371 AACTACCACTTTTCACTGATCAAGTAGCAAA
1 AGCTACCACTTTTCACTGATCAGGTAACCGG
* * * *
16549402 ATCTACCACTTTTCACTGATCAGGTAGCTGA
1 AGCTACCACTTTTCACTGATCAGGTAACCGG
16549433 AGCTACCACTTTTCA
1 AGCTACCACTTTTCA
16549448 ATTGTCATTT
Statistics
Matches: 120, Mismatches: 19, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 120 1.00
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.29
Consensus pattern (31 bp):
AGCTACCACTTTTCACTGATCAGGTAACCGG
Found at i:16549349 original size:62 final size:62
Alignment explanation
Indices: 16549270--16549447 Score: 230
Period size: 62 Copynumber: 2.9 Consensus size: 62
16549260 TCAGATAAGT
* * * * * *
16549270 GTAGCCGAAGCTACCACTATTCACTGATCAGGTAACTGGAGCTATCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAGGTAGCTGAAGCTACCACTTTTCACTGATCAA
** ** *
16549332 GTAGCCGGGGCTACCACTTTTCACTGATCAGGTAGCCAAAACTACCACTTTTCACTGATCAA
1 GTAGCCGAAGCTACCACTTTTCACTGATCAGGTAGCTGAAGCTACCACTTTTCACTGATCAA
** *
16549394 GTAGCAAAATCTACCACTTTTCACTGATCAGGTAGCTGAAGCTACCACTTTTCA
1 GTAGCCGAAGCTACCACTTTTCACTGATCAGGTAGCTGAAGCTACCACTTTTCA
16549448 ATTGTCATTT
Statistics
Matches: 97, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
62 97 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (62 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAGGTAGCTGAAGCTACCACTTTTCACTGATCAA
Found at i:16549528 original size:50 final size:50
Alignment explanation
Indices: 16549425--16550301 Score: 1675
Period size: 50 Copynumber: 17.5 Consensus size: 50
16549415 CACTGATCAG
* * * * *
16549425 GTAGCTGAAGCTACCACTTTTCAATTGTCA-TTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCACTTT-TCCTTGATCAGATAAGT
16549476 GTAGCCGAAGCTATCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
16549526 GTAGCCGAAGCTATCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
16549576 GTAGCCGAAGCTATCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
16549626 GTAGCCGAAGCTATCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
16549676 GTAGCCGAAGCTATCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
16549726 GTAGCCGAAGCTATCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
16549776 GTAGCCGAAGCTATCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
16549826 GTAGCCGAAGCTATCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
16549876 GTAGCCGAAGCTATCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
16549926 GTAGCCGAAGCTATCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
16549976 GTAGCCGAAGCTATCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
16550026 GTAGCCGAAGCTATCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
16550076 GTAGCCGAAGCTATCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
16550126 GTAGCCGAAGCTATCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
16550176 GTAGCCGAAGCTATCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
16550226 GTAGCCGAAGCTATCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
*
16550276 GTAGCCGAAGCTATCACTTATAACTT
1 GTAGCCGAAGCTATCACTTATCACTT
16550302 GTTGCCATGG
Statistics
Matches: 819, Mismatches: 6, Indels: 3
0.99 0.01 0.00
Matches are distributed among these distances:
50 794 0.97
51 25 0.03
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.36
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
Found at i:16551467 original size:13 final size:13
Alignment explanation
Indices: 16551449--16551473 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
16551439 CAGAATTTCC
16551449 ACTTCAAACTCTA
1 ACTTCAAACTCTA
16551462 ACTTCAAACTCT
1 ACTTCAAACTCT
16551474 TTTACAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.32, G:0.00, T:0.32
Consensus pattern (13 bp):
ACTTCAAACTCTA
Found at i:16566718 original size:18 final size:18
Alignment explanation
Indices: 16566695--16566739 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
16566685 AAGTTGATGC
*
16566695 TGCAGAAGTA-GAAGTTGT
1 TGCAGAAG-AGGAAATTGT
16566713 TGCAGAAGAGGAAATTGT
1 TGCAGAAGAGGAAATTGT
*
16566731 TGCTGAAGA
1 TGCAGAAGA
16566740 AGAGGAGGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 1 0.04
18 23 0.96
ACGTcount: A:0.36, C:0.07, G:0.33, T:0.24
Consensus pattern (18 bp):
TGCAGAAGAGGAAATTGT
Found at i:16569581 original size:48 final size:48
Alignment explanation
Indices: 16569519--16570403 Score: 1421
Period size: 48 Copynumber: 18.4 Consensus size: 48
16569509 TATATATGTG
*
16569519 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
16569567 TGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
* *
16569615 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
*
16569663 CGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
* ** *
16569711 TGTGGTAAAGCCGAATGGCTAGTGATTCG-GCTA-GTGTGA-ATATGTATA
1 TGTGGTAAAGCCGAATGGCTA---ATGCGAAATATGTATGAGATATGTATA
*
16569759 CG-GTGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
1 TGTG-GTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
*
16569807 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
*
16569855 CG-GTGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
1 TGTG-GTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
*
16569903 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
*
16569951 CG-GTGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
1 TGTG-GTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
*
16569999 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
*
16570047 CG-GTGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
1 TGTG-GTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
*
16570095 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
*
16570143 CG-GTGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
1 TGTG-GTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
*
16570191 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
*
16570239 CG-GTGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
1 TGTG-GTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
*
16570287 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
*
16570335 CG-GTGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
1 TGTG-GTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
16570383 TGTGGTAAAGCCGAATGGCTA
1 TGTGGTAAAGCCGAATGGCTA
16570404 GTGATTCGGC
Statistics
Matches: 776, Mismatches: 41, Indels: 40
0.91 0.05 0.05
Matches are distributed among these distances:
45 4 0.01
46 2 0.00
47 12 0.02
48 740 0.95
49 12 0.02
50 2 0.00
51 4 0.01
ACGTcount: A:0.35, C:0.09, G:0.28, T:0.29
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
Found at i:16569668 original size:96 final size:96
Alignment explanation
Indices: 16569519--16570403 Score: 1636
Period size: 96 Copynumber: 9.2 Consensus size: 96
16569509 TATATATGTG
*
16569519 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA-TGTGGTAAAGCCGAAT
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGGT-GTAAAGCCGAAT
16569583 GGCTAATGCGAAATATGTATGAGATATGTATA
65 GGCTAATGCGAAATATGTATGAGATATGTATA
*
16569615 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAC-GTGGTAAAGCCGAAT
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGGT-GTAAAGCCGAAT
16569679 GGCTAATGCGAAATATGTATGAGATATGTATA
65 GGCTAATGCGAAATATGTATGAGATATGTATA
* ** *
16569711 TGTGGTAAAGCCGAATGGCT-A-GTG-ATTCGGCTAGTGTGAATATGTATACGGTGTAAAGCCGA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATG-TA-TGAG-ATATGTATACGGTGTAAAGCCGA
16569773 ATGGCTAATGCGAAATATGTATGAGATATGTATA
63 ATGGCTAATGCGAAATATGTATGAGATATGTATA
16569807 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGGTGTAAAGCCGAATG
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGGTGTAAAGCCGAATG
16569872 GCTAATGCGAAATATGTATGAGATATGTATA
66 GCTAATGCGAAATATGTATGAGATATGTATA
16569903 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGGTGTAAAGCCGAATG
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGGTGTAAAGCCGAATG
16569968 GCTAATGCGAAATATGTATGAGATATGTATA
66 GCTAATGCGAAATATGTATGAGATATGTATA
16569999 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGGTGTAAAGCCGAATG
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGGTGTAAAGCCGAATG
16570064 GCTAATGCGAAATATGTATGAGATATGTATA
66 GCTAATGCGAAATATGTATGAGATATGTATA
16570095 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGGTGTAAAGCCGAATG
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGGTGTAAAGCCGAATG
16570160 GCTAATGCGAAATATGTATGAGATATGTATA
66 GCTAATGCGAAATATGTATGAGATATGTATA
16570191 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGGTGTAAAGCCGAATG
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGGTGTAAAGCCGAATG
16570256 GCTAATGCGAAATATGTATGAGATATGTATA
66 GCTAATGCGAAATATGTATGAGATATGTATA
16570287 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGGTGTAAAGCCGAATG
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGGTGTAAAGCCGAATG
16570352 GCTAATGCGAAATATGTATGAGATATGTATA
66 GCTAATGCGAAATATGTATGAGATATGTATA
16570383 TGTGGTAAAGCCGAATGGCTA
1 TGTGGTAAAGCCGAATGGCTA
16570404 GTGATTCGGC
Statistics
Matches: 771, Mismatches: 10, Indels: 16
0.97 0.01 0.02
Matches are distributed among these distances:
93 3 0.00
94 5 0.01
95 3 0.00
96 746 0.97
97 6 0.01
98 5 0.01
99 3 0.00
ACGTcount: A:0.35, C:0.09, G:0.28, T:0.29
Consensus pattern (96 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGGTGTAAAGCCGAATG
GCTAATGCGAAATATGTATGAGATATGTATA
Found at i:16570630 original size:37 final size:37
Alignment explanation
Indices: 16570579--16570678 Score: 173
Period size: 37 Copynumber: 2.7 Consensus size: 37
16570569 AATATATTCT
*
16570579 GGGTAAGACTCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
*
16570616 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
*
16570653 GGGTAAGACCCGATAACTACGTGTGG
1 GGGTAAGACCCGATGACTACGTGTGG
16570679 GGACTATTCG
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.24, C:0.18, G:0.33, T:0.25
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
Found at i:16571513 original size:17 final size:17
Alignment explanation
Indices: 16571491--16571523 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
16571481 GGGGTGTTAC
*
16571491 ATTGTCATTGCATTTTT
1 ATTGTCATTACATTTTT
16571508 ATTGTCATTACATTTT
1 ATTGTCATTACATTTT
16571524 CACGTTAGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.58
Consensus pattern (17 bp):
ATTGTCATTACATTTTT
Found at i:16573590 original size:27 final size:26
Alignment explanation
Indices: 16573542--16573593 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
16573532 GCGAGGCTGC
*
16573542 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
16573568 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
16573594 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:16574248 original size:27 final size:26
Alignment explanation
Indices: 16574218--16574629 Score: 379
Period size: 27 Copynumber: 15.3 Consensus size: 26
16574208 GGGGAAAAAT
* *
16574218 GGTAATTTTACCCCACGAGGGTATCTC
1 GGTAATTTTACCCTAC-AGGGTATTTC
* *
16574245 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTTTACCCTACA-GGGTATTTC
*
16574272 GGT-ATTTCTACCCTACAAAGGTATTTC
1 GGTAATTT-TACCCTAC-AGGGTATTTC
* * *
16574299 GGTAATTCTATCCTACAGGGGTATTTT
1 GGTAATTTTACCCTACA-GGGTATTTC
* * *
16574326 AGTACTTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACA-GGGTATTTC
*
16574353 GAT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTAC-AGGGTATTTC
*
16574380 GAT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTAC-AGGGTATTTC
* *
16574407 GGTAATTCTACCATACAGGGGTATTTC
1 GGTAATTTTACCCTACA-GGGTATTTC
* * *
16574434 AGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTTTACCCTACA-GGGTATTTC
16574461 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTAC-AGGGTATTTC
16574488 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTAC-AGGGTATTTC
*
16574515 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACA-GGGTATTTC
* *
16574542 AGTAA-TTTACCCTACAGGGGTATTTT
1 GGTAATTTTACCCTACA-GGGTATTTC
16574568 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTAC-AGGGTATTTC
*
16574595 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTTTACCCTAC-AGGGTATTTC
*
16574622 GATAATTT
1 GGTAATTT
16574630 CACAAATATG
Statistics
Matches: 331, Mismatches: 37, Indels: 34
0.82 0.09 0.08
Matches are distributed among these distances:
25 1 0.00
26 35 0.11
27 279 0.84
28 16 0.05
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (26 bp):
GGTAATTTTACCCTACAGGGTATTTC
Found at i:16574295 original size:54 final size:54
Alignment explanation
Indices: 16574218--16574628 Score: 545
Period size: 54 Copynumber: 7.6 Consensus size: 54
16574208 GGGGAAAAAT
* * * * *
16574218 GGTAATTTTACCCCACGAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * * *
16574272 GGTATTTCTACCCTACAAAGGTATTTCGGTAATTCTATCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * * * * *
16574326 AGTACTTCTACCCTACAGGGGTATTTCGATATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * *
16574380 GATATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCATACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * * * *
16574434 AGTAATTCTACCCTACAGGGGTATTTTGGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
*
16574488 GGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * * * *
16574542 AGTAATT-TACCCTACAGGGGTATTTTGGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
*
16574595 GGTAATTCTACCCTACAAGGGTATTTCGATAATT
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATT
16574629 TCACAAATAT
Statistics
Matches: 307, Mismatches: 49, Indels: 2
0.86 0.14 0.01
Matches are distributed among these distances:
53 48 0.16
54 259 0.84
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
Found at i:16574359 original size:81 final size:81
Alignment explanation
Indices: 16574218--16574628 Score: 545
Period size: 81 Copynumber: 5.1 Consensus size: 81
16574208 GGGGAAAAAT
* * * * * * *
16574218 GGTAATTTTACCCCACGAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTTGGTATTTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAGGGGTATTTCGGTAATTCTAC
*
16574283 CCTACAAAGGTATTTC
66 CCTACAAGGGTATTTC
* * ** * * *
16574299 GGTAATTCTATCCTACAGGGGTATTTTAGTACTTCTACCCTACAGGGGTATTTCGATATTTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAGGGGTATTTCGGTAATTCTAC
16574364 CCTACAAGGGTATTTC
66 CCTACAAGGGTATTTC
* * * * *
16574380 GATATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCATACAGGGGTATTTCAGTAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAGGGGTATTTCGGTAATTCTAC
* *
16574445 CCTACAGGGGTATTTT
66 CCTACAAGGGTATTTC
* *
16574461 GGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAGGGGTATTTCGGTAATTCTAC
*
16574526 CCTACAGGGGTATTTC
66 CCTACAAGGGTATTTC
* * * *
16574542 AGTAATT-TACCCTACAGGGGTATTTTGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAGGGGTATTTCGGTAATTCTAC
16574606 CCTACAAGGGTATTTC
66 CCTACAAGGGTATTTC
*
16574622 GATAATT
1 GGTAATT
16574629 TCACAAATAT
Statistics
Matches: 292, Mismatches: 38, Indels: 1
0.88 0.11 0.00
Matches are distributed among these distances:
80 75 0.26
81 217 0.74
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (81 bp):
GGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAGGGGTATTTCGGTAATTCTAC
CCTACAAGGGTATTTC
Found at i:16574671 original size:27 final size:27
Alignment explanation
Indices: 16574583--16574764 Score: 197
Period size: 27 Copynumber: 6.7 Consensus size: 27
16574573 TTCTACCCTA
* * **
16574583 CAAGGGTATTTCGGTAATTCTACCCTA-
1 CAAGGGTATTTTGGTAATTTTA-CAAAC
* * *
16574610 CAAGGGTATTTCGATAATTTCACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
16574636 TATGGGGTATTTTGGTAATTTTACAAAC
1 CA-AGGGTATTTTGGTAATTTTACAAAC
*
16574664 CAAAGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
16574691 CAGGGGTATTTTGGCAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
*
16574718 TAAGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
16574745 CAGGGGTATTTTAGTAATTT
1 CAAGGGTATTTTGGTAATTT
16574765 GGTAAACTAA
Statistics
Matches: 131, Mismatches: 22, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
26 3 0.02
27 127 0.97
28 1 0.01
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.37
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAC
Found at i:16574771 original size:27 final size:27
Alignment explanation
Indices: 16574613--16574764 Score: 198
Period size: 27 Copynumber: 5.6 Consensus size: 27
16574603 TACCCTACAA
* * * *
16574613 GGGTATTTCGATAATTTCACAAA-TATG
1 GGGTATTTTGGTAATTTTACAAACCA-G
*
16574640 GGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
16574667 AGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
16574694 GGGTATTTTGGCAATTTTACAAACTAA
1 GGGTATTTTGGTAATTTTACAAACCAG
16574721 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
16574748 GGGTATTTTAGTAATTT
1 GGGTATTTTGGTAATTT
16574765 GGTAAACTAA
Statistics
Matches: 109, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
27 108 0.99
28 1 0.01
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:16574774 original size:54 final size:54
Alignment explanation
Indices: 16574611--16574764 Score: 220
Period size: 54 Copynumber: 2.9 Consensus size: 54
16574601 TCTACCCTAC
* * * * *
16574611 AAGGGTATTTCGATAATTTCACAAA-TATGGGGTATTTTGGTAATTTTACAAACC
1 AAGGGTATTTTGGTAATTTTACAAACCA-GGGGTATTTTGGTAATTTTACAAACT
* *
16574665 AAAGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGCAATTTTACAAACT
1 AAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACT
*
16574719 AAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTT
1 AAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
16574765 GGTAAACTAA
Statistics
Matches: 89, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
54 88 0.99
55 1 0.01
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.38
Consensus pattern (54 bp):
AAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACT
Found at i:16576339 original size:17 final size:17
Alignment explanation
Indices: 16576317--16576382 Score: 114
Period size: 17 Copynumber: 3.9 Consensus size: 17
16576307 TGGGCCGAAC
*
16576317 TGGGCCTGTAGGCCCAA
1 TGGGCCCGTAGGCCCAA
16576334 TGGGCCCGTAGGCCCAA
1 TGGGCCCGTAGGCCCAA
16576351 TGGGCCCGTAGGCCCAA
1 TGGGCCCGTAGGCCCAA
*
16576368 TGAGCCCGTAGGCCC
1 TGGGCCCGTAGGCCC
16576383 CACACGGGAA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 47 1.00
ACGTcount: A:0.17, C:0.35, G:0.35, T:0.14
Consensus pattern (17 bp):
TGGGCCCGTAGGCCCAA
Found at i:16582081 original size:46 final size:46
Alignment explanation
Indices: 16581915--16582089 Score: 173
Period size: 46 Copynumber: 3.8 Consensus size: 46
16581905 TGTAACCCAC
* *
16581915 CCATAAGTGAACTCAGACTCAACT-AACGAGCTC-GAGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA-CATTTGCAT
* * *
16581960 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-G--GAC-ATTTGCAT
* * *
16582010 CTC-T---CGAACTCGGACTCAACTCAACGTGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
*
16582053 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
16582090 TGCCCAAACA
Statistics
Matches: 106, Mismatches: 13, Indels: 21
0.76 0.09 0.15
Matches are distributed among these distances:
42 1 0.01
43 8 0.08
44 2 0.02
45 23 0.22
46 38 0.36
47 24 0.23
49 1 0.01
50 8 0.08
51 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
Found at i:16582081 original size:93 final size:92
Alignment explanation
Indices: 16581923--16582093 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 92
16581913 ACCCATAAGT
16581923 GAACTCAGACTCAACTAACGAGCTCGAGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCAGACTCAACTAACGAGCTCGAGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
16581988 GAGCTCAGATGCCTAGTTACATCTCTC
66 GAGCTCAGATGCCTAGTTACATCTCTC
* * * *
16582015 GAACTCGGACTCAACTCAACGTGTTCG-GACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCAGACTCAACT-AACGAGCTCGAG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
* *
16582079 ACGAGTTCGGATGCC
64 ACGAGCTCAGATGCC
16582094 CAAACATCCT
Statistics
Matches: 71, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
92 16 0.23
93 55 0.77
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (92 bp):
GAACTCAGACTCAACTAACGAGCTCGAGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCAGATGCCTAGTTACATCTCTC
Found at i:16582108 original size:46 final size:46
Alignment explanation
Indices: 16581965--16582108 Score: 134
Period size: 46 Copynumber: 3.1 Consensus size: 46
16581955 CGCATCCATA
* *
16581965 AGTGAACTCGGACTCAACTCAACGAGCTCAGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTA--TACATC-CT
* * * * *
16582014 --CGAACTCGGACTCAACTCAACGTGTTCGGA--CATTTGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCC-T
* *
16582057 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCCT
16582104 AGTGA
1 AGTGA
16582109 CATGTCACTT
Statistics
Matches: 75, Mismatches: 14, Indels: 15
0.72 0.13 0.14
Matches are distributed among these distances:
42 1 0.01
43 6 0.08
45 2 0.03
46 33 0.44
47 27 0.36
48 6 0.08
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.23
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCCT
Found at i:16586149 original size:14 final size:15
Alignment explanation
Indices: 16586130--16586162 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
16586120 ATTGTTAAAA
16586130 TTATTAAAATT-ATT
1 TTATTAAAATTAATT
*
16586144 TTATTAAATTTAATT
1 TTATTAAAATTAATT
16586159 TTAT
1 TTAT
16586163 CACAATATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (15 bp):
TTATTAAAATTAATT
Found at i:16586285 original size:34 final size:34
Alignment explanation
Indices: 16586221--16586285 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
16586211 TATTACATAA
* * *
16586221 AAGTAGCAATTATTATAATACAATACAATTAATG
1 AAGTAGCAATTATTATAATAAAAGAAAATTAATG
16586255 AAGTAGCAATTATTATAATAAAAGAAAATTA
1 AAGTAGCAATTATTATAATAAAAGAAAATTA
16586286 TATCGCATCT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.54, C:0.06, G:0.09, T:0.31
Consensus pattern (34 bp):
AAGTAGCAATTATTATAATAAAAGAAAATTAATG
Found at i:16595520 original size:12 final size:12
Alignment explanation
Indices: 16595503--16595532 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
16595493 TCAGAGAGTT
*
16595503 ACACGGGTTCAG
1 ACACGGGCTCAG
16595515 ACACGGGCTCAG
1 ACACGGGCTCAG
16595527 ACACGG
1 ACACGG
16595533 TCATGTGATC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.27, C:0.30, G:0.33, T:0.10
Consensus pattern (12 bp):
ACACGGGCTCAG
Found at i:16602709 original size:10 final size:10
Alignment explanation
Indices: 16602663--16602710 Score: 60
Period size: 10 Copynumber: 4.6 Consensus size: 10
16602653 CTATCGAAAC
*
16602663 TAATCAAAAT
1 TAATTAAAAT
*
16602673 TAATCAAAAT
1 TAATTAAAAT
16602683 TAATTATAAAAT
1 TAA-T-TAAAAT
16602695 TAATTAAAAT
1 TAATTAAAAT
16602705 TAATTA
1 TAATTA
16602711 TGTTAATAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
10 25 0.71
11 2 0.06
12 8 0.23
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (10 bp):
TAATTAAAAT
Found at i:16602721 original size:22 final size:22
Alignment explanation
Indices: 16602668--16602711 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
16602658 GAAACTAATC
*
16602668 AAAATTAATCAAAATTAATTAT
1 AAAATTAATTAAAATTAATTAT
16602690 AAAATTAATTAAAATTAATTAT
1 AAAATTAATTAAAATTAATTAT
16602712 GTTAATAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (22 bp):
AAAATTAATTAAAATTAATTAT
Found at i:16606390 original size:29 final size:29
Alignment explanation
Indices: 16606333--16606390 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
16606323 GCCTTTTGAA
* *
16606333 AATATTTACAAAAAAAGCATCTAATTTTT
1 AATATTTACAAAAAAAGCACCCAATTTTT
*
16606362 AATATTTACAAAAAGAGCAACCCAATTTT
1 AATATTTACAAAAAAAGC-ACCCAATTTT
16606391 GAAAATAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 17 0.68
30 8 0.32
ACGTcount: A:0.48, C:0.14, G:0.05, T:0.33
Consensus pattern (29 bp):
AATATTTACAAAAAAAGCACCCAATTTTT
Found at i:16607475 original size:17 final size:17
Alignment explanation
Indices: 16607453--16607488 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
16607443 AACCCACTTG
16607453 ACACATGGTCTACTCCT
1 ACACATGGTCTACTCCT
*
16607470 ACACATGGTCTACTGCT
1 ACACATGGTCTACTCCT
16607487 AC
1 AC
16607489 CAATATGTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.25, C:0.33, G:0.14, T:0.28
Consensus pattern (17 bp):
ACACATGGTCTACTCCT
Found at i:16613819 original size:42 final size:42
Alignment explanation
Indices: 16613765--16613858 Score: 152
Period size: 42 Copynumber: 2.2 Consensus size: 42
16613755 ATAGCCCAAC
* * * *
16613765 TATGGTCTTACACGAAGTCTCTTATCGGTGCCATATCCCAGA
1 TATGGTCTTACACGAAGTCTCATATAGATGCCATAACCCAGA
16613807 TATGGTCTTACACGAAGTCTCATATAGATGCCATAACCCAGA
1 TATGGTCTTACACGAAGTCTCATATAGATGCCATAACCCAGA
16613849 TATGGTCTTA
1 TATGGTCTTA
16613859 AGCATAGTCT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (42 bp):
TATGGTCTTACACGAAGTCTCATATAGATGCCATAACCCAGA
Found at i:16622873 original size:25 final size:25
Alignment explanation
Indices: 16622816--16622874 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
16622806 TGAAATCAGC
* *
16622816 AAGAGAATAAAGAAAAATGGATAGG
1 AAGAGAAGAAAGAAAAATGGAGAGG
16622841 AA-ATGAAGAAAGAAAAAT-GAGAGAG
1 AAGA-GAAGAAAGAAAAATGGAGAG-G
16622866 AAGAGAAGA
1 AAGAGAAGA
16622875 GATGAGAAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
24 5 0.17
25 23 0.79
26 1 0.03
ACGTcount: A:0.63, C:0.00, G:0.29, T:0.08
Consensus pattern (25 bp):
AAGAGAAGAAAGAAAAATGGAGAGG
Found at i:16623449 original size:22 final size:22
Alignment explanation
Indices: 16623424--16623467 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
16623414 CAAATCTGTC
*
16623424 AAAATTAATCAAAATTAATTAT
1 AAAAATAATCAAAATTAATTAT
* * *
16623446 AAAAATATTTAAAATTCATTAT
1 AAAAATAATCAAAATTAATTAT
16623468 GTTAAAAATT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.39
Consensus pattern (22 bp):
AAAAATAATCAAAATTAATTAT
Found at i:16626602 original size:15 final size:16
Alignment explanation
Indices: 16626577--16626611 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
16626567 GAAATAGCAT
*
16626577 TATTAAACTATTTTGA
1 TATTAAACTATTCTGA
16626593 TATT-AACTATTCTGA
1 TATTAAACTATTCTGA
16626608 TATT
1 TATT
16626612 TATGATAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.34, C:0.09, G:0.06, T:0.51
Consensus pattern (16 bp):
TATTAAACTATTCTGA
Found at i:16630076 original size:46 final size:47
Alignment explanation
Indices: 16630020--16630238 Score: 236
Period size: 46 Copynumber: 4.7 Consensus size: 47
16630010 TGGTTGAGCA
*
16630020 TCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAA-TG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACTG
* * * * *
16630066 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACT--G
*
16630111 CATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACT-
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACTG
* * *
16630159 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAA-TG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACTG
* * *
16630205 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
16630239 GGGGTGGGTT
Statistics
Matches: 145, Mismatches: 18, Indels: 20
0.79 0.10 0.11
Matches are distributed among these distances:
42 2 0.01
43 4 0.03
45 4 0.03
46 99 0.68
47 27 0.19
48 2 0.01
50 3 0.02
51 4 0.03
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACTG
Found at i:16630176 original size:93 final size:93
Alignment explanation
Indices: 16630017--16630187 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
16630007 GGATGGTTGA
* * *
16630017 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
*
16630082 TGAGTCTGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
16630110 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACT-CCCGAGCTCGTTGAG
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-TGCCCGAACTCGTTGAG
16630174 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
16630188 ATTTATGGAT
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
93 71 0.99
94 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.30
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:16630500 original size:19 final size:20
Alignment explanation
Indices: 16630463--16630500 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
16630453 ATAAGGTGGT
16630463 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
16630483 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
16630501 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:16637708 original size:47 final size:47
Alignment explanation
Indices: 16637595--16637954 Score: 340
Period size: 46 Copynumber: 7.7 Consensus size: 47
16637585 GGATGGTTGA
*
16637595 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGAAT
* * *
16637643 G--TCCGAACTCGTTAAGTTGAGTCCGAGTTC-GTGA-AATGC-AACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAA-T
*
16637686 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
1 --GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGAAT
* * *
16637736 GC--CCGAGCTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAA-T
*
16637779 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
1 --GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGAAT
* * *
16637829 GC--CCGAGCTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAA-T
* * *
16637872 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAAC
1 --GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGAAT
*
16637922 GC--CCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
16637955 TAGGGGCGGG
Statistics
Matches: 258, Mismatches: 27, Indels: 56
0.76 0.08 0.16
Matches are distributed among these distances:
42 6 0.02
43 15 0.06
45 11 0.04
46 111 0.43
47 82 0.32
48 13 0.05
50 14 0.05
51 6 0.02
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAAT
Found at i:16637754 original size:93 final size:93
Alignment explanation
Indices: 16637595--16637951 Score: 651
Period size: 93 Copynumber: 3.8 Consensus size: 93
16637585 GGATGGTTGA
* * *
16637595 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTAAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
* *
16637660 TGAGTCCGAGTTCGTGAAATGCAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
16637688 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
16637753 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
16637781 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
16637846 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
16637874 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
16637939 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
16637952 ACTTAGGGGC
Statistics
Matches: 257, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 257 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:16638218 original size:19 final size:20
Alignment explanation
Indices: 16638181--16638218 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
16638171 ATAAGGTGGT
16638181 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
16638201 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
16638219 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:16646362 original size:23 final size:22
Alignment explanation
Indices: 16646311--16646363 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 22
16646301 TAACAATAGC
*
16646311 AGAAAAACATGTCATAAGATAA
1 AGAAAAACATGTCATAAAATAA
*
16646333 AGGAAAAGCATGTCATAAAATAGA
1 A-GAAAAACATGTCATAAAATA-A
*
16646357 AAAAAAA
1 AGAAAAA
16646364 AGCTTTAACT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
22 1 0.04
23 22 0.88
24 2 0.08
ACGTcount: A:0.62, C:0.08, G:0.15, T:0.15
Consensus pattern (22 bp):
AGAAAAACATGTCATAAAATAA
Found at i:16647333 original size:13 final size:12
Alignment explanation
Indices: 16647311--16647335 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
16647301 TATATGCAAT
16647311 TTATCCAAAAAA
1 TTATCCAAAAAA
16647323 TTATCCAAAAAA
1 TTATCCAAAAAA
16647335 T
1 T
16647336 AAACACAAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (12 bp):
TTATCCAAAAAA
Found at i:16655317 original size:41 final size:41
Alignment explanation
Indices: 16655271--16655352 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
16655261 ACCCAAGGGT
16655271 TTCCAAGGGGGATAGAATTATTTCAGTTTCCAAACATGCCG
1 TTCCAAGGGGGATAGAATTATTTCAGTTTCCAAACATGCCG
*
16655312 TTCCAAGGTGGATAGAATTATTTCAGTTTCCAAACATGCCG
1 TTCCAAGGGGGATAGAATTATTTCAGTTTCCAAACATGCCG
16655353 AAATTGACCC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (41 bp):
TTCCAAGGGGGATAGAATTATTTCAGTTTCCAAACATGCCG
Found at i:16656158 original size:22 final size:21
Alignment explanation
Indices: 16656122--16656167 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
16656112 TCGGTCCTTG
16656122 TAGTCTTTAGACTTTTGAAATT
1 TAGTCTTTAGACTTTT-AAATT
** *
16656144 TAGTCTTTATTCTTTTAATTT
1 TAGTCTTTAGACTTTTAAATT
16656165 TAG
1 TAG
16656168 GATTTGAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.24, C:0.09, G:0.11, T:0.57
Consensus pattern (21 bp):
TAGTCTTTAGACTTTTAAATT
Found at i:16664176 original size:30 final size:32
Alignment explanation
Indices: 16664117--16664178 Score: 92
Period size: 31 Copynumber: 2.0 Consensus size: 32
16664107 ACACAAAATC
*
16664117 AAATTTCATATATAATCTTATACATTTATCCA
1 AAATTTCATATATAATCTTATAAATTTATCCA
*
16664149 AAATTT-ATATATAATTTTA-AAATTTATCCA
1 AAATTTCATATATAATCTTATAAATTTATCCA
16664179 TGATAAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 10 0.36
31 12 0.43
32 6 0.21
ACGTcount: A:0.44, C:0.11, G:0.00, T:0.45
Consensus pattern (32 bp):
AAATTTCATATATAATCTTATAAATTTATCCA
Found at i:16664792 original size:10 final size:10
Alignment explanation
Indices: 16664762--16664795 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
16664752 ATTTTTTTTT
16664762 AAATTATAAA
1 AAATTATAAA
**
16664772 AAATTGCAAA
1 AAATTATAAA
16664782 AAATTATAAA
1 AAATTATAAA
16664792 AAAT
1 AAAT
16664796 AGTATAATAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.26
Consensus pattern (10 bp):
AAATTATAAA
Found at i:16664848 original size:27 final size:26
Alignment explanation
Indices: 16664805--16664855 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
16664795 TAGTATAATA
*
16664805 AAAAAATTATATAATTAAGAAAAAAT
1 AAAAAATTATAAAATTAAGAAAAAAT
* *
16664831 AAAAAATTGTAAATATTATGAAAAA
1 AAAAAATTATAAA-ATTAAGAAAAA
16664856 TGTTTAAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 11 0.52
27 10 0.48
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.27
Consensus pattern (26 bp):
AAAAAATTATAAAATTAAGAAAAAAT
Found at i:16675563 original size:26 final size:25
Alignment explanation
Indices: 16675528--16675601 Score: 78
Period size: 25 Copynumber: 2.9 Consensus size: 25
16675518 TTTTATCCCT
* *
16675528 ATTTTACCTTTAGTAAAATTTTGACG
1 ATTTT-CCCTTAGTAAAATTTTGACA
* *
16675554 ATTTTCCCTTGGTAAAATTTTAACA
1 ATTTTCCCTTAGTAAAATTTTGACA
*
16675579 ATTTTGCCCTTAAT-AAATTTTGA
1 ATTTT-CCCTTAGTAAAATTTTGA
16675602 GAAAATATGT
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
25 29 0.73
26 11 0.28
ACGTcount: A:0.31, C:0.14, G:0.09, T:0.46
Consensus pattern (25 bp):
ATTTTCCCTTAGTAAAATTTTGACA
Found at i:16686634 original size:27 final size:27
Alignment explanation
Indices: 16686604--16686781 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
16686594 ATATTGAGTC
* * * *
16686604 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
16686631 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
16686658 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
16686686 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
16686713 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
16686740 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
16686767 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
16686782 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:16686743 original size:82 final size:81
Alignment explanation
Indices: 16686625--16686780 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
16686615 TGCTATATAA
* *
16686625 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
16686690 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
16686707 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
16686771 CACTTAGTGC
65 CACTTAGTGC
16686781 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:16700472 original size:19 final size:19
Alignment explanation
Indices: 16700448--16700485 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
16700438 GACAAAGCCC
16700448 AATAAATAATAATGCCTGA
1 AATAAATAATAATGCCTGA
* *
16700467 AATAAATGATAATGTCTGA
1 AATAAATAATAATGCCTGA
16700486 TACATGATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.50, C:0.08, G:0.13, T:0.29
Consensus pattern (19 bp):
AATAAATAATAATGCCTGA
Found at i:16710831 original size:21 final size:21
Alignment explanation
Indices: 16710805--16710851 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
16710795 GTTACACGTC
16710805 CTGGCATATGGGCGTGTGACA
1 CTGGCATATGGGCGTGTGACA
16710826 CTGGCATATGGGCGTGTGACA
1 CTGGCATATGGGCGTGTGACA
16710847 C-GGCA
1 CTGGCA
16710852 ATGTGACCCT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 4 0.15
21 22 0.85
ACGTcount: A:0.19, C:0.21, G:0.38, T:0.21
Consensus pattern (21 bp):
CTGGCATATGGGCGTGTGACA
Found at i:16712094 original size:11 final size:10
Alignment explanation
Indices: 16712078--16712150 Score: 58
Period size: 11 Copynumber: 6.6 Consensus size: 10
16712068 TTGAATTTTG
16712078 TTTTTATTTA
1 TTTTTATTTA
16712088 TTGTTTACTATTA
1 TT-TTTA-T-TTA
*
16712101 -TTTTATTTT
1 TTTTTATTTA
16712110 TTATTTATTTA
1 TT-TTTATTTA
16712121 TTTTTGAATTATA
1 TTTTT--ATT-TA
16712134 TTTTTATTTA
1 TTTTTATTTA
16712144 TTATTTA
1 TT-TTTA
16712151 CTACTCTTTG
Statistics
Matches: 52, Mismatches: 2, Indels: 17
0.73 0.03 0.24
Matches are distributed among these distances:
9 2 0.04
10 11 0.21
11 24 0.46
12 5 0.10
13 10 0.19
ACGTcount: A:0.23, C:0.01, G:0.03, T:0.73
Consensus pattern (10 bp):
TTTTTATTTA
Found at i:16712138 original size:56 final size:55
Alignment explanation
Indices: 16712052--16712179 Score: 166
Period size: 56 Copynumber: 2.3 Consensus size: 55
16712042 ATCAATTGGG
* * * * *
16712052 TTTATTTTATTTAATTTTGAATTTTGTTTTTATTTATTGTTTACTATTATTTTATTT
1 TTTA-TTTATTTAATTTTGAATTATATTTTTATTTATTATTTACTACTATTTGA-TT
* *
16712109 TTTATTTATTTATTTTTGAATTATATTTTTATTTATTATTTACTACTCTTTGATT
1 TTTATTTATTTAATTTTGAATTATATTTTTATTTATTATTTACTACTATTTGATT
*
16712164 TTTATATATTTAATTT
1 TTTATTTATTTAATTT
16712180 CGTATTACTT
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
55 16 0.26
56 42 0.68
57 4 0.06
ACGTcount: A:0.23, C:0.03, G:0.04, T:0.70
Consensus pattern (55 bp):
TTTATTTATTTAATTTTGAATTATATTTTTATTTATTATTTACTACTATTTGATT
Found at i:16714737 original size:48 final size:48
Alignment explanation
Indices: 16714653--16714781 Score: 150
Period size: 48 Copynumber: 2.7 Consensus size: 48
16714643 ATGTCATTAA
* * * * * *
16714653 AAGCTTCAATGATTTAGCTTCGGGCCATGATATTAACACTTCGGGTGC
1 AAGCTTCATTGATTTGGCTTCGGACCATAATATTAACACTTCAGGTAC
* * *
16714701 AAGCCTCATTGATTTGGCTTTGGACCATAATATTAACACTTCAGGTAT
1 AAGCTTCATTGATTTGGCTTCGGACCATAATATTAACACTTCAGGTAC
* * *
16714749 GAGCTTCATTGATTTGGCTTCGGGCCATGATAT
1 AAGCTTCATTGATTTGGCTTCGGACCATAATAT
16714782 GGGCACCTAG
Statistics
Matches: 67, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 67 1.00
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.34
Consensus pattern (48 bp):
AAGCTTCATTGATTTGGCTTCGGACCATAATATTAACACTTCAGGTAC
Found at i:16725243 original size:25 final size:25
Alignment explanation
Indices: 16725204--16725297 Score: 91
Period size: 25 Copynumber: 3.8 Consensus size: 25
16725194 ATTCTAACCC
*
16725204 ACAGCTCGTGTGAGCATACCGATTT
1 ACAGCTCATGTGAGCATACCGATTT
* * * *
16725229 ATAGCTCATGAGAGCATACCAATCT
1 ACAGCTCATGTGAGCATACCGATTT
*
16725254 ACAGCTCGA-GTGAGCATACCGATTC
1 ACAGCTC-ATGTGAGCATACCGATTT
* * *
16725279 ACAACTCGTATGAGCATAC
1 ACAGCTCATGTGAGCATAC
16725298 ATGTACATGA
Statistics
Matches: 54, Mismatches: 13, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
25 53 0.98
26 1 0.02
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (25 bp):
ACAGCTCATGTGAGCATACCGATTT
Found at i:16744505 original size:5 final size:5
Alignment explanation
Indices: 16744483--16744522 Score: 62
Period size: 5 Copynumber: 7.6 Consensus size: 5
16744473 GGAGTCCCAC
16744483 CCTCA CCCTCA CCCTCA CCTCA CCTCA CCTCA CCTCA CCT
1 CCTCA -CCTCA -CCTCA CCTCA CCTCA CCTCA CCTCA CCT
16744523 AGGAAGTTTC
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 23 0.68
6 11 0.32
ACGTcount: A:0.17, C:0.62, G:0.00, T:0.20
Consensus pattern (5 bp):
CCTCA
Found at i:16747951 original size:38 final size:38
Alignment explanation
Indices: 16747909--16747982 Score: 130
Period size: 38 Copynumber: 1.9 Consensus size: 38
16747899 TTTTGAAACA
* *
16747909 AAATTGAACATTAAAATTAAATTTAGGTATCAAATATC
1 AAATTGAACATTAAAATTAAATTTAAGTATAAAATATC
16747947 AAATTGAACATTAAAATTAAATTTAAGTATAAAATA
1 AAATTGAACATTAAAATTAAATTTAAGTATAAAATA
16747983 ATATATTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.54, C:0.05, G:0.07, T:0.34
Consensus pattern (38 bp):
AAATTGAACATTAAAATTAAATTTAAGTATAAAATATC
Found at i:16747979 original size:18 final size:18
Alignment explanation
Indices: 16747920--16747981 Score: 54
Period size: 18 Copynumber: 3.3 Consensus size: 18
16747910 AATTGAACAT
*
16747920 TAAAATTAAATTTAGGTA
1 TAAAATTAAATTTAAGTA
* * *
16747938 TCAAATATCAAATTGAA-CA
1 T-AAA-ATTAAATTTAAGTA
16747957 TTAAAATTAAATTTAAGTA
1 -TAAAATTAAATTTAAGTA
16747976 TAAAAT
1 TAAAAT
16747982 AATATATTAA
Statistics
Matches: 33, Mismatches: 7, Indels: 8
0.69 0.15 0.17
Matches are distributed among these distances:
18 16 0.48
19 8 0.24
20 9 0.27
ACGTcount: A:0.53, C:0.05, G:0.06, T:0.35
Consensus pattern (18 bp):
TAAAATTAAATTTAAGTA
Found at i:16748895 original size:30 final size:29
Alignment explanation
Indices: 16748828--16748895 Score: 68
Period size: 30 Copynumber: 2.3 Consensus size: 29
16748818 AATAATAAAC
16748828 TTTTTAAT-TAAAAGAACTAACTTATTTT
1 TTTTTAATATAAAAGAACTAACTTATTTT
* * *
16748856 TTATCTAATATACAAA-AATTAATTTATTTAT
1 TT-TTTAATATA-AAAGAACTAACTTATTT-T
16748887 TTTTTAATA
1 TTTTTAATA
16748896 GATAAATAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
28 2 0.06
29 5 0.16
30 19 0.59
31 6 0.19
ACGTcount: A:0.41, C:0.06, G:0.01, T:0.51
Consensus pattern (29 bp):
TTTTTAATATAAAAGAACTAACTTATTTT
Found at i:16752031 original size:25 final size:23
Alignment explanation
Indices: 16751992--16752044 Score: 72
Period size: 25 Copynumber: 2.3 Consensus size: 23
16751982 TCATTTAATC
*
16751992 AAAT-AAATTATTAAAAAAATCATA
1 AAATAAAAATATTAAAAAAAT-A-A
16752016 AAATAAAAATATTAAAAAAATAA
1 AAATAAAAATATTAAAAAAATAA
16752039 AAATAA
1 AAATAA
16752045 TCGATTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
23 7 0.26
24 5 0.19
25 15 0.56
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.25
Consensus pattern (23 bp):
AAATAAAAATATTAAAAAAATAA
Found at i:16761590 original size:12 final size:12
Alignment explanation
Indices: 16761573--16761597 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
16761563 CGTCGTAGTT
16761573 ATCATCATAATC
1 ATCATCATAATC
16761585 ATCATCATAATC
1 ATCATCATAATC
16761597 A
1 A
16761598 AGTCCATAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.24, G:0.00, T:0.32
Consensus pattern (12 bp):
ATCATCATAATC
Done.