Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 51 of 284
Found at i:18067742 original size:27 final size:27
Alignment explanation
Indices: 18067712--18067862 Score: 151
Period size: 27 Copynumber: 5.6 Consensus size: 27
18067702 CAAATCGTGA
* * **
18067712 GTATTTTGATAATTTCACAAATTAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
** **
18067739 GTATTTTGGTAATTTTACAAGTCAATG
1 GTATTTTGGTAATTTTACAAACCAGGG
* *
18067766 ATATTTTGGTAATTTTAGAAACCAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
* *
18067793 GTATTTTAGTAATTTTACAAACTAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
** *
18067820 GTATTTTGGTAATTTTACTGATC-GAGG
1 GTATTTTGGTAATTTTACAAACCAG-GG
18067847 GTATTTTGGTAATTTT
1 GTATTTTGGTAATTTT
18067863 GTTAACTAAG
Statistics
Matches: 102, Mismatches: 21, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
26 1 0.01
27 101 0.99
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.44
Consensus pattern (27 bp):
GTATTTTGGTAATTTTACAAACCAGGG
Found at i:18067852 original size:81 final size:81
Alignment explanation
Indices: 18067712--18067862 Score: 216
Period size: 81 Copynumber: 1.9 Consensus size: 81
18067702 CAAATCGTGA
* *
18067712 GTATTTTGATAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAGTCAATGATATTTTGGTA
1 GTATTTTGATAATTTCACAAACTAGGGGTATTTTGGTAATTTTACAAGTCAAGGATATTTTGGTA
18067777 ATTTTAGAAACCAGGG
66 ATTTTAGAAACCAGGG
* * * *
18067793 GTATTTT-AGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTAC-TGATCGAGGGTATTTTGG
1 GTATTTTGA-TAATTTCACAAACTAGGGGTATTTTGGTAATTTTACAAG-TCAAGGATATTTTGG
18067856 TAATTTT
64 TAATTTT
18067863 GTTAACTAAG
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
80 2 0.03
81 60 0.97
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.44
Consensus pattern (81 bp):
GTATTTTGATAATTTCACAAACTAGGGGTATTTTGGTAATTTTACAAGTCAAGGATATTTTGGTA
ATTTTAGAAACCAGGG
Found at i:18067874 original size:27 final size:27
Alignment explanation
Indices: 18067712--18067879 Score: 142
Period size: 27 Copynumber: 6.2 Consensus size: 27
18067702 CAAATCGTGA
* * * *
18067712 GTATTTTGATAATTTCACAAATTAGGG
1 GTATTTTGGTAATTTTACAAACTAAGG
* *
18067739 GTATTTTGGTAATTTTAC-AAGTCAATG
1 GTATTTTGGTAATTTTACAAACT-AAGG
* * * *
18067766 ATATTTTGGTAATTTTAGAAACCAGGG
1 GTATTTTGGTAATTTTACAAACTAAGG
* *
18067793 GTATTTTAGTAATTTTACAAACTAGGG
1 GTATTTTGGTAATTTTACAAACTAAGG
** *
18067820 GTATTTTGGTAATTTTACTGA-TCGAGG
1 GTATTTTGGTAATTTTACAAACT-AAGG
***
18067847 GTATTTTGGTAATTTTGTTAACTAAGG
1 GTATTTTGGTAATTTTACAAACTAAGG
18067874 GTATTT
1 GTATTT
18067880 CAATAATTTT
Statistics
Matches: 113, Mismatches: 24, Indels: 8
0.78 0.17 0.06
Matches are distributed among these distances:
26 4 0.04
27 106 0.94
28 3 0.03
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (27 bp):
GTATTTTGGTAATTTTACAAACTAAGG
Found at i:18067876 original size:81 final size:81
Alignment explanation
Indices: 18067712--18067889 Score: 209
Period size: 81 Copynumber: 2.2 Consensus size: 81
18067702 CAAATCGTGA
* * *
18067712 GTATTTT-GATAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAGTCAATGATATTTTGGT
1 GTATTTTAG-TAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAGTCAAGGATATTTTGGT
*
18067776 AATTTTAGAAACCAGGG
65 AATTTTAGAAACCAAGG
* * *
18067793 GTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTAC-TGATCGAGGGTATTTTGGT
1 GTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAG-TCAAGGATATTTTGGT
* *
18067857 AATTTT-GTTAACTAAGG
65 AATTTTAG-AAACCAAGG
* *
18067874 GTATTTCAATAATTTT
1 GTATTTTAGTAATTTT
18067890 GTAAATCGAG
Statistics
Matches: 83, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
80 2 0.02
81 80 0.96
82 1 0.01
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.44
Consensus pattern (81 bp):
GTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAGTCAAGGATATTTTGGTA
ATTTTAGAAACCAAGG
Found at i:18067913 original size:27 final size:27
Alignment explanation
Indices: 18067883--18068167 Score: 353
Period size: 27 Copynumber: 10.6 Consensus size: 27
18067873 GGTATTTCAA
* *
18067883 TAATTTTGTAAATCGAGGATAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAATGG
* *
18067910 TAATTTTGTAAATCGAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAATGG
* *
18067937 TAATTCTATAAATCGAGGGTAAAATAG
1 TAATTCTGTAAATCGAGGGTAAAATGG
*
18067964 TAATTCTGTAAA-CTGAGGGTAAAACGG
1 TAATTCTGTAAATC-GAGGGTAAAATGG
* **
18067991 TAATTTTGTAAATCGAGGGTAAAAAAG
1 TAATTCTGTAAATCGAGGGTAAAATGG
18068018 TAATTCTGTAAA-CTGAGGGTAAAATGG
1 TAATTCTGTAAATC-GAGGGTAAAATGG
* **
18068045 TAATTTTGTAAATCGAGGGTAAAAAAG
1 TAATTCTGTAAATCGAGGGTAAAATGG
18068072 TAATTCTGTAAA-CTGAGGGTAAAATGG
1 TAATTCTGTAAATC-GAGGGTAAAATGG
* **
18068099 TAATTTTGTAAATCGAGGGTAAAAAAG
1 TAATTCTGTAAATCGAGGGTAAAATGG
*
18068126 TAATTCTGTAAA-CTGAGGGTAAAACGG
1 TAATTCTGTAAATC-GAGGGTAAAATGG
18068153 TAATTCTGTAAATCG
1 TAATTCTGTAAATCG
18068168 GGAGTACTTT
Statistics
Matches: 223, Mismatches: 27, Indels: 16
0.84 0.10 0.06
Matches are distributed among these distances:
26 4 0.02
27 215 0.96
28 4 0.02
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (27 bp):
TAATTCTGTAAATCGAGGGTAAAATGG
Found at i:18068184 original size:54 final size:54
Alignment explanation
Indices: 18067883--18068167 Score: 464
Period size: 54 Copynumber: 5.3 Consensus size: 54
18067873 GGTATTTCAA
* ** *
18067883 TAATTTTGTAAATCGAGGATAAAATGGTAATTTTGTAAA-TCGAGGGTAAAACGG
1 TAATTTTGTAAATCGAGGGTAAAAAAGTAATTCTGTAAACT-GAGGGTAAAACGG
* * *
18067937 TAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACGG
1 TAATTTTGTAAATCGAGGGTAAAAAAGTAATTCTGTAAACTGAGGGTAAAACGG
*
18067991 TAATTTTGTAAATCGAGGGTAAAAAAGTAATTCTGTAAACTGAGGGTAAAATGG
1 TAATTTTGTAAATCGAGGGTAAAAAAGTAATTCTGTAAACTGAGGGTAAAACGG
*
18068045 TAATTTTGTAAATCGAGGGTAAAAAAGTAATTCTGTAAACTGAGGGTAAAATGG
1 TAATTTTGTAAATCGAGGGTAAAAAAGTAATTCTGTAAACTGAGGGTAAAACGG
18068099 TAATTTTGTAAATCGAGGGTAAAAAAGTAATTCTGTAAACTGAGGGTAAAACGG
1 TAATTTTGTAAATCGAGGGTAAAAAAGTAATTCTGTAAACTGAGGGTAAAACGG
*
18068153 TAATTCTGTAAATCG
1 TAATTTTGTAAATCG
18068168 GGAGTACTTT
Statistics
Matches: 219, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
54 218 1.00
55 1 0.00
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (54 bp):
TAATTTTGTAAATCGAGGGTAAAAAAGTAATTCTGTAAACTGAGGGTAAAACGG
Found at i:18069106 original size:27 final size:27
Alignment explanation
Indices: 18069068--18069235 Score: 157
Period size: 27 Copynumber: 6.2 Consensus size: 27
18069058 CTACCTCCCT
* *
18069068 TAAATCGAGGGTAAAACGATAATTTTG
1 TAAATCAAGGGTAAAACGATAATTCTG
* *
18069095 TAAA-CTGAGGGT-AAACCAGTAATTCTG
1 TAAATC-AAGGGTAAAACGA-TAATTCTG
* * * *
18069122 TAAATCAAGGGTAAAATGGTAATTTTA
1 TAAATCAAGGGTAAAACGATAATTCTG
* *
18069149 CAAATCAAGGGTAAAACGGTAATTCTG
1 TAAATCAAGGGTAAAACGATAATTCTG
18069176 TAAATCAAGGGTAAAAC-AGTAATTCTG
1 TAAATCAAGGGTAAAACGA-TAATTCTG
*
18069203 TAAA-CTGAGGGTAAAACTG-TAATTCTG
1 TAAATC-AAGGGTAAAAC-GATAATTCTG
18069230 TAAATC
1 TAAATC
18069236 GCGCTCCCAT
Statistics
Matches: 117, Mismatches: 15, Indels: 17
0.79 0.10 0.11
Matches are distributed among these distances:
26 7 0.06
27 105 0.90
28 5 0.04
ACGTcount: A:0.41, C:0.11, G:0.20, T:0.28
Consensus pattern (27 bp):
TAAATCAAGGGTAAAACGATAATTCTG
Found at i:18069127 original size:54 final size:54
Alignment explanation
Indices: 18069068--18069235 Score: 214
Period size: 54 Copynumber: 3.1 Consensus size: 54
18069058 CTACCTCCCT
* *
18069068 TAAATCGAGGGTAAAACGATAATTTTGTAAACTGAGGGTAAACCAGTAATTCTG
1 TAAATCAAGGGTAAAACGATAATTTTGTAAACTGAGGGTAAAACAGTAATTCTG
* * ** * *
18069122 TAAATCAAGGGTAAAATGGTAATTTTACAAA-TCAAGGGTAAAACGGTAATTCTG
1 TAAATCAAGGGTAAAACGATAATTTTGTAAACT-GAGGGTAAAACAGTAATTCTG
* *
18069176 TAAATCAAGGGTAAAAC-AGTAATTCTGTAAACTGAGGGTAAAACTGTAATTCTG
1 TAAATCAAGGGTAAAACGA-TAATTTTGTAAACTGAGGGTAAAACAGTAATTCTG
18069230 TAAATC
1 TAAATC
18069236 GCGCTCCCAT
Statistics
Matches: 96, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
53 1 0.01
54 94 0.98
55 1 0.01
ACGTcount: A:0.41, C:0.11, G:0.20, T:0.28
Consensus pattern (54 bp):
TAAATCAAGGGTAAAACGATAATTTTGTAAACTGAGGGTAAAACAGTAATTCTG
Found at i:18069214 original size:81 final size:81
Alignment explanation
Indices: 18069069--18069226 Score: 214
Period size: 81 Copynumber: 2.0 Consensus size: 81
18069059 TACCTCCCTT
* * * *
18069069 AAATCGAGGGTAAAACGATAATTTTGTAAACTGAGGGTAAACCAGTAATTCTGTAAATCAAGGGT
1 AAATCAAGGGTAAAACGATAATTCTGTAAACTAAGGGTAAAACAGTAATTCTGTAAATCAAGGGT
18069134 AAAA-TGGTAATTTTAC
66 AAAACT-GTAATTTTAC
* *
18069150 AAATCAAGGGTAAAACGGTAATTCTGTAAA-TCAAGGGTAAAACAGTAATTCTGTAAA-CTGAGG
1 AAATCAAGGGTAAAACGATAATTCTGTAAACT-AAGGGTAAAACAGTAATTCTGTAAATC-AAGG
18069213 GTAAAACTGTAATT
64 GTAAAACTGTAATT
18069227 CTGTAAATCG
Statistics
Matches: 68, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
80 2 0.03
81 65 0.96
82 1 0.01
ACGTcount: A:0.42, C:0.10, G:0.21, T:0.27
Consensus pattern (81 bp):
AAATCAAGGGTAAAACGATAATTCTGTAAACTAAGGGTAAAACAGTAATTCTGTAAATCAAGGGT
AAAACTGTAATTTTAC
Found at i:18071187 original size:17 final size:17
Alignment explanation
Indices: 18071165--18071206 Score: 84
Period size: 17 Copynumber: 2.5 Consensus size: 17
18071155 ATTTACTCGT
18071165 GTGGGGCCCACAAGCCG
1 GTGGGGCCCACAAGCCG
18071182 GTGGGGCCCACAAGCCG
1 GTGGGGCCCACAAGCCG
18071199 GTGGGGCC
1 GTGGGGCC
18071207 TATACGACCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.14, C:0.33, G:0.45, T:0.07
Consensus pattern (17 bp):
GTGGGGCCCACAAGCCG
Found at i:18074305 original size:27 final size:27
Alignment explanation
Indices: 18074267--18074320 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
18074257 GAACGGGATC
18074267 AAATCTCATTCATTTTGTTTAAATTTT
1 AAATCTCATTCATTTTGTTTAAATTTT
*
18074294 AAATCTCGTTCATTTTGTTTAAATTTT
1 AAATCTCATTCATTTTGTTTAAATTTT
18074321 CTTGTTTTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.28, C:0.11, G:0.06, T:0.56
Consensus pattern (27 bp):
AAATCTCATTCATTTTGTTTAAATTTT
Found at i:18080277 original size:93 final size:93
Alignment explanation
Indices: 18080164--18080335 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
18080154 CGCCCATAAG
*
18080164 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
18080228 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
18080257 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
18080322 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
18080336 TCAACCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:18080330 original size:46 final size:46
Alignment explanation
Indices: 18080157--18080332 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
18080147 TGTAACCCGC
* *
18080157 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
18080203 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
18080253 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
18080296 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
18080333 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:18087804 original size:46 final size:46
Alignment explanation
Indices: 18087733--18087861 Score: 179
Period size: 46 Copynumber: 2.8 Consensus size: 46
18087723 TGTAACCCGC
* * * * * *
18087733 CCATAAGCGAAGTCGGACTAAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAATTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
18087779 CCATAAGTGAATTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAATTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
18087825 CCATAAGTGAACTT-GGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAA-TTCGGACTCAACTCAACGAGTTCGGA
18087862 TGCTCAACCA
Statistics
Matches: 74, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
46 72 0.97
47 2 0.03
ACGTcount: A:0.31, C:0.26, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAATTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:18093699 original size:58 final size:58
Alignment explanation
Indices: 18093636--18093761 Score: 148
Period size: 58 Copynumber: 2.2 Consensus size: 58
18093626 ATCCCAGATG
* * **
18093636 GGTAATCCTGATATA-ATACCTCTTGAGCATATGTTATGATT-AGGATTTAGCCTGGACT
1 GGTAATCCTAATAGAGAT-CCT-TTGAGCATACATTATGATTAAGGATTTAGCCTGGACT
* * *
18093694 GGTAATCCTAATGGAGCTCCTTTGAGCTTACATTATGATTAAGGATTTAGCCTGGACT
1 GGTAATCCTAATAGAGATCCTTTGAGCATACATTATGATTAAGGATTTAGCCTGGACT
*
18093752 AGTAATCCTA
1 GGTAATCCTA
18093762 TTATACAATA
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
57 16 0.28
58 41 0.71
59 1 0.02
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.35
Consensus pattern (58 bp):
GGTAATCCTAATAGAGATCCTTTGAGCATACATTATGATTAAGGATTTAGCCTGGACT
Found at i:18097916 original size:27 final size:27
Alignment explanation
Indices: 18097894--18098088 Score: 300
Period size: 27 Copynumber: 7.2 Consensus size: 27
18097884 ATGTATCTCG
18097894 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
18097921 GTATTTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
18097948 GTAATTCTACCCTACAGGGGGATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
18097975 GTAATTCTACCTTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
18098002 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
18098029 GTAATTCTACCTTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
18098056 GTAATTCTACCTTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
18098083 GTAATT
1 GTAATT
18098089 TTACAAACCA
Statistics
Matches: 152, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 152 1.00
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:18098106 original size:27 final size:27
Alignment explanation
Indices: 18098073--18098143 Score: 90
Period size: 27 Copynumber: 2.6 Consensus size: 27
18098063 TACCTTACAG
*
18098073 GGGTATTTCGGTAATTTTAC-AAACCA
1 GGGTATTTTGGTAATTTTACTAAACCA
* * *
18098099 GGGATATTTTGGTAATTTTGCTAATCTA
1 GGG-TATTTTGGTAATTTTACTAAACCA
18098127 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
18098144 GGTAAACTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
26 3 0.08
27 29 0.74
28 7 0.18
ACGTcount: A:0.25, C:0.08, G:0.23, T:0.44
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACTAAACCA
Found at i:18098107 original size:81 final size:81
Alignment explanation
Indices: 18097894--18098115 Score: 288
Period size: 81 Copynumber: 2.7 Consensus size: 81
18097884 ATGTATCTCG
* * *
18097894 GTAATTCTACCCTACAGGGGTATTTCAGT-ATTTCTACCCTACAAGGGTATTTCAGTAATTCTAC
1 GTAATTCTACCTTACAGGGGTATTTCAGTAATTT-TACCCTACCAGGGTATTTCGGTAATTCTAC
*
18097958 CCTACAGGGGGATTTCG
65 CCTACAGGGGGATTTCA
*
18097975 GTAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTA-CAGGGGTATTTCGGTAATTCTAC
1 GTAATTCTACCTTACAGGGGTATTTCAGTAATTTTACCCTACCA-GGGTATTTCGGTAATTCTAC
* * *
18098039 CTTACAGGGGTATTTTA
65 CCTACAGGGGGATTTCA
* ** *
18098056 GTAATTCTACCTTACAGGGGTATTTCGGTAATTTTA-CAAACCAGGGATATTTTGGTAATT
1 GTAATTCTACCTTACAGGGGTATTTCAGTAATTTTACCCTACCAGGG-TATTTCGGTAATT
18098116 TTGCTAATCT
Statistics
Matches: 124, Mismatches: 13, Indels: 8
0.86 0.09 0.06
Matches are distributed among these distances:
80 6 0.05
81 115 0.93
82 3 0.02
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (81 bp):
GTAATTCTACCTTACAGGGGTATTTCAGTAATTTTACCCTACCAGGGTATTTCGGTAATTCTACC
CTACAGGGGGATTTCA
Found at i:18098141 original size:81 final size:81
Alignment explanation
Indices: 18097893--18098142 Score: 267
Period size: 81 Copynumber: 3.1 Consensus size: 81
18097883 AATGTATCTC
* * ** *
18097893 GGTAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCTACAAGGG-TATTTCAGTAATTCTA
1 GGTAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCAAAC-AGGGATATTTCGGTAATTCTA
* *
18097957 CCCT-ACAGGGGGATTTC
65 -CCTAACAGGGGTATTTT
** *
18097974 GGTAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTAC
1 GGTAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCAAACAGGGATATTTCGGTAATTCTAC
*
18098039 CTTACAGGGGTATTTT
66 CTAACAGGGGTATTTT
* * * * *
18098055 AGTAATTCTACCTTACAGGGGTATTTCGGTAATTTTA-CAAACCAGGGATATTTTGGTAATT-TT
1 GGTAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCAAA-CAGGGATATTTCGGTAATTCTA
*
18098118 GCTAATCTA-GGGTATTTT
65 CCTAA-C-AGGGGTATTTT
18098136 GGTAATT
1 GGTAATT
18098143 TGGTAAACTA
Statistics
Matches: 148, Mismatches: 16, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
80 13 0.09
81 134 0.91
82 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.37
Consensus pattern (81 bp):
GGTAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCAAACAGGGATATTTCGGTAATTCTAC
CTAACAGGGGTATTTT
Found at i:18098158 original size:26 final size:27
Alignment explanation
Indices: 18098103--18098159 Score: 71
Period size: 26 Copynumber: 2.1 Consensus size: 27
18098093 AAACCAGGGA
* **
18098103 TATTTTGGTAATTTTGCTAATCTAGGG
1 TATTTTGGTAATTTTGCTAAACTAAAG
*
18098130 TATTTTGGTAA-TTTGGTAAACTAAAG
1 TATTTTGGTAATTTTGCTAAACTAAAG
18098156 TATT
1 TATT
18098160 CTAAATAGGG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.28, C:0.05, G:0.19, T:0.47
Consensus pattern (27 bp):
TATTTTGGTAATTTTGCTAAACTAAAG
Found at i:18099964 original size:54 final size:54
Alignment explanation
Indices: 18099889--18099993 Score: 174
Period size: 54 Copynumber: 1.9 Consensus size: 54
18099879 TGGATAAGTT
* **
18099889 GTAGAATTATCGAAATACCCCTGTAAGGTAGAATTATTGAGATACCCTTGTAAG
1 GTAGAAATATCGAAATACCCCTGTAAGGTAGAATTACCGAGATACCCTTGTAAG
*
18099943 GTAGAAATATCGAAATACCCCTGTAGGGTAGAATTACCGAGATACCCTTGT
1 GTAGAAATATCGAAATACCCCTGTAAGGTAGAATTACCGAGATACCCTTGT
18099994 GGGGTAAAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 47 1.00
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (54 bp):
GTAGAAATATCGAAATACCCCTGTAAGGTAGAATTACCGAGATACCCTTGTAAG
Found at i:18099999 original size:27 final size:27
Alignment explanation
Indices: 18099889--18099989 Score: 139
Period size: 27 Copynumber: 3.7 Consensus size: 27
18099879 TGGATAAGTT
18099889 GTAGAATTATCGAAATACCCCTGTAAG
1 GTAGAATTATCGAAATACCCCTGTAAG
* * *
18099916 GTAGAATTATTGAGATACCCTTGTAAG
1 GTAGAATTATCGAAATACCCCTGTAAG
* *
18099943 GTAGAAATATCGAAATACCCCTGTAGG
1 GTAGAATTATCGAAATACCCCTGTAAG
* *
18099970 GTAGAATTACCGAGATACCC
1 GTAGAATTATCGAAATACCC
18099990 TTGTGGGGTA
Statistics
Matches: 63, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 63 1.00
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.26
Consensus pattern (27 bp):
GTAGAATTATCGAAATACCCCTGTAAG
Found at i:18100004 original size:27 final size:27
Alignment explanation
Indices: 18099893--18100007 Score: 97
Period size: 27 Copynumber: 4.3 Consensus size: 27
18099883 TAAGTTGTAG
* * * * *
18099893 AATTATCGAAATACCCCTGTAAGGTAG
1 AATTACCGAGATACCCTTGTAGGGTAA
** *
18099920 AATTATTGAGATACCCTTGTAAGGTAGA
1 AATTACCGAGATACCCTTGTAGGGTA-A
* * * *
18099948 AA-TATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAGATACCCTTGTAGGGTAA
*
18099974 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAGATACCCTTGTAGGGTAA
18100001 AATTACC
1 AATTACC
18100008 ATTTTGCCCC
Statistics
Matches: 72, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
26 2 0.03
27 68 0.94
28 2 0.03
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (27 bp):
AATTACCGAGATACCCTTGTAGGGTAA
Found at i:18100476 original size:27 final size:26
Alignment explanation
Indices: 18100432--18100482 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
18100422 CTCGCTGCAA
*
18100432 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
18100459 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
18100483 TGTAGCCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.18, C:0.27, G:0.20, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:18100551 original size:69 final size:67
Alignment explanation
Indices: 18100420--18100551 Score: 183
Period size: 69 Copynumber: 1.9 Consensus size: 67
18100410 ATGAGGTAAG
* * *
18100420 GCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAATATCTTG
1 GCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACCTAGCCACAATATCTTG
18100485 TA
66 TA
* * * *
18100487 GCCTCGCTGCAATCTGGTGGCTTTGCCATATATATATCTGTTCTGGTGGCCTAGCCACAATATCT
1 GCCTCGCTGCAATCTGGTGGCCTCGCC--ACATATATCTGTTCTGGTGACCTAGCCACAATATCT
18100552 GTATCTGGTG
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
67 25 0.45
69 31 0.55
ACGTcount: A:0.18, C:0.27, G:0.21, T:0.33
Consensus pattern (67 bp):
GCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACCTAGCCACAATATCTTG
TA
Found at i:18104103 original size:54 final size:54
Alignment explanation
Indices: 18103909--18104100 Score: 215
Period size: 55 Copynumber: 3.6 Consensus size: 54
18103899 CTGACCATTT
* * *
18103909 CCATGTCTTGACATGGTCTTACATGGTATCATTGCCTTAT-GAACTCACCATTG
1 CCATGCCTTGACATGGTCTTACATGGTATCATTGCCTTATAGAACTTACCAATG
* * * * ** *
18103962 CCATGCCTTGGCATAGTCTTACATGGGATCATTTCCTTATAGTAGTTTATCAATG
1 CCATGCCTTGACATGGTCTTACATGGTATCATTGCCTTATAG-AACTTACCAATG
* * * * *
18104017 CCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAGAACTTACCAATG
1 CCATGCCTTGACATGGTCTTACATGGTATCATTGCCTTATAGAACTTACCAATG
* *
18104071 CCATGCCTTGGCATGGTCTTACTTGGTATC
1 CCATGCCTTGACATGGTCTTACATGGTATC
18104101 CTTAAACCCT
Statistics
Matches: 110, Mismatches: 27, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
53 35 0.32
54 35 0.32
55 40 0.36
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.37
Consensus pattern (54 bp):
CCATGCCTTGACATGGTCTTACATGGTATCATTGCCTTATAGAACTTACCAATG
Found at i:18120988 original size:79 final size:82
Alignment explanation
Indices: 18120877--18121061 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
18120867 GCTACTCGTT
* *
18120877 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
18120940 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
18120957 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
18121020 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
18121037 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
18121062 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:18121061 original size:40 final size:40
Alignment explanation
Indices: 18120858--18121061 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
18120848 CGGAATTTAA
** *
18120858 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
18120898 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
18120938 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
18120977 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
18121017 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
18121057 CCGGA
1 CCGGA
18121062 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:18129028 original size:29 final size:27
Alignment explanation
Indices: 18129010--18129079 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
18129000 ATATTAAGTC
18129010 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
18129037 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
18129065 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
18129080 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:18129073 original size:28 final size:28
Alignment explanation
Indices: 18129010--18129107 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
18129000 ATATTAAGTC
*
18129010 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
18129037 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
18129065 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
18129094 CGCACACTTAGTGC
1 CGCACACTTAGTGC
18129108 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:18129829 original size:2 final size:2
Alignment explanation
Indices: 18129822--18129847 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
18129812 CGAATGGGCT
18129822 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
18129848 GCCGAATATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:18139779 original size:40 final size:39
Alignment explanation
Indices: 18139678--18139783 Score: 142
Period size: 40 Copynumber: 2.7 Consensus size: 39
18139668 AATCAGTGTA
18139678 GGCCTTAGCCCACTCAGATATAGAATAGATATAAATTAG
1 GGCCTTAGCCCACTCAGATATAGAATAGATATAAATTAG
* * *
18139717 GGCATTAGCCCAGCTCAAATATAGAGTCAAGA-ATAAATTAG
1 GGCCTTAGCCCA-CTCAGATATAGAAT--AGATATAAATTAG
*
18139758 GGCCTTAGCCCAATCAGATATAGAAT
1 GGCCTTAGCCCACTCAGATATAGAAT
18139784 GCAGATCAGA
Statistics
Matches: 57, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
39 11 0.19
40 23 0.40
41 20 0.35
42 3 0.05
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.24
Consensus pattern (39 bp):
GGCCTTAGCCCACTCAGATATAGAATAGATATAAATTAG
Found at i:18140845 original size:31 final size:30
Alignment explanation
Indices: 18140799--18140881 Score: 123
Period size: 31 Copynumber: 2.7 Consensus size: 30
18140789 TCAATCTCAA
*
18140799 CATAT-ACTGGGCCGAAGCCTTCACATTATT
1 CATATCACTAGGCCGAAGCCTT-ACATTATT
*
18140829 CATATCACTAGGCCGAAGCCCTTTCATTATT
1 CATATCACTAGGCCGAAG-CCTTACATTATT
18140860 CATATCACTAGGCCGAAGCCTT
1 CATATCACTAGGCCGAAGCCTT
18140882 TACTGTAACG
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
30 9 0.18
31 36 0.73
32 4 0.08
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.29
Consensus pattern (30 bp):
CATATCACTAGGCCGAAGCCTTACATTATT
Found at i:18141155 original size:26 final size:26
Alignment explanation
Indices: 18141102--18141163 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
18141092 CTCTTTTAAT
* *
18141102 AACTGGGGCAAAAGCCATTTTTGATA
1 AACTGGGGCAAAAGCCAGTTTCGATA
*
18141128 AACTGGGGCAAAAGCTC-GTTTCGGTA
1 AACTGGGGCAAAAGC-CAGTTTCGATA
*
18141154 AACTAGGGCA
1 AACTGGGGCA
18141164 TAGCCCTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 30 0.97
27 1 0.03
ACGTcount: A:0.32, C:0.18, G:0.27, T:0.23
Consensus pattern (26 bp):
AACTGGGGCAAAAGCCAGTTTCGATA
Found at i:18141251 original size:11 final size:11
Alignment explanation
Indices: 18141220--18141267 Score: 57
Period size: 11 Copynumber: 4.6 Consensus size: 11
18141210 AAATGAATAC
18141220 ATCATGTGCAT
1 ATCATGTGCAT
*
18141231 ATCA--TACAT
1 ATCATGTGCAT
18141240 ATCATGTGCAT
1 ATCATGTGCAT
*
18141251 ATCATGT-CAA
1 ATCATGTGCAT
18141261 ATCATGT
1 ATCATGT
18141268 ATATCAAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
9 8 0.25
10 9 0.28
11 15 0.47
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.35
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:18143740 original size:180 final size:180
Alignment explanation
Indices: 18143483--18143821 Score: 493
Period size: 180 Copynumber: 1.9 Consensus size: 180
18143473 TAAGATCTGT
*
18143483 TAATTTTTCCAAAAACTAGACTCACATATAATCTTACCATAAAAGTTTCAAAATTTTTGGTTAAG
1 TAATTTTCCCAAAAACTAGACTCACATATAATCTTACCATAAAAGTTTCAAAATTTTTGGTTAAG
18143548 CCAATAAGTACATTTTATTCATTAA-ATATACCACTATTTCACTGTTTAACAATTCCAACCTCTC
66 CCAATAAGTACATTTTATTCATTAACA-ATACCACTATTTCACTGTTTAACAATTCCAACCTCTC
18143612 TTCACTAAAAATTATTTATCTCATGGTACAGGCCTCCAAATTACGAACCGC
130 TTCACTAAAAATTATTTATCTCATGGTACAGGCCTCCAAATTACGAACCGC
* * * * * *
18143663 TAATTTTCCCAGAAACTAGACTCACATATATTCTTACTATAAAA-TTTTAAGAATTTTTTGTTTA
1 TAATTTTCCCAAAAACTAGACTCACATATAATCTTACCATAAAAGTTTCAA-AATTTTTGGTTAA
* * * * * * ** * *
18143727 TCCAATTAGTACATTTTATTCATTAACAATACCCCTATTTTATTGTTTGACAATTCTGATCTTTC
65 GCCAATAAGTACATTTTATTCATTAACAATACCACTATTTCACTGTTTAACAATTCCAACCTCTC
18143792 TTCACTAAAAATTATTTATCTCATGGTACA
130 TTCACTAAAAATTATTTATCTCATGGTACA
18143822 AATCTCAGAT
Statistics
Matches: 140, Mismatches: 17, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
179 5 0.04
180 134 0.96
181 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.07, T:0.39
Consensus pattern (180 bp):
TAATTTTCCCAAAAACTAGACTCACATATAATCTTACCATAAAAGTTTCAAAATTTTTGGTTAAG
CCAATAAGTACATTTTATTCATTAACAATACCACTATTTCACTGTTTAACAATTCCAACCTCTCT
TCACTAAAAATTATTTATCTCATGGTACAGGCCTCCAAATTACGAACCGC
Found at i:18144454 original size:50 final size:50
Alignment explanation
Indices: 18144379--18144760 Score: 280
Period size: 50 Copynumber: 7.7 Consensus size: 50
18144369 ACCGAAGCTC
* *
18144379 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
* * ** * *
18144429 TCTGGTACACGTAGTAGCCTGCACTTAGTGCTACACACGTTACTTATCCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
* * * * ** *
18144479 TCTGATACACGTAGTAACCTGCACTTAGTACTACACACGTGATCGAAGTTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGA-CCTA-TCAA
* ** * *
18144531 -CGGGTATGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
** * * *
18144580 TCCAGTACACGTAGTAGCCTGCACTTAGCACTGCACACAT--GACCTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACT--ACACATGCGACCTATCAA
* ** * *** ** * *
18144630 TCTGATACACGTAGTAGTTTTCACTTAGTACTACACACATGATCGAAACTA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGA-CCTATCAA
* * * *
18144681 TCGGGT--ACGCA-TA----GCAGTTAGTACTACACATGCGACCTAACAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
*
18144724 TCTAGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
18144761 CATGACCTAA
Statistics
Matches: 254, Mismatches: 63, Indels: 30
0.73 0.18 0.09
Matches are distributed among these distances:
43 9 0.04
44 17 0.07
45 4 0.02
46 2 0.01
48 7 0.03
49 7 0.03
50 157 0.62
51 43 0.17
52 8 0.03
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (50 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
Found at i:18144645 original size:151 final size:150
Alignment explanation
Indices: 18144382--18144770 Score: 538
Period size: 151 Copynumber: 2.6 Consensus size: 150
18144372 GAAGCTCTCT
*
18144382 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAG-CTGCACTTAGTACTACACATGCGACCTATCAATCTAGTACACGTAGTAGC
* * * * *
18144447 CTGCACTTAGTGCTACACACGTTACTTATCCATCTGATACACGTAGTAACCTGCACTTAGTACTA
65 CTGCACTTAGTACTACACACATGACCTAACCATCTGATACACGTAGTAACCTGCACTTAGTACTA
* **
18144512 CACACGTGATCGAAGTTAACG
130 CACACATGATCGAAACTAACG
* *
18144533 GGTATGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTATCAATCCAGTACACGTAGTAGC
1 GGTACGCATAGTAGC-TGCACTTAGTACTACACATGCGACCTATCAATCTAGTACACGTAGTAGC
* * *** *
18144598 CTGCACTTAGCACTGCACACATGACCTAACCATCTGATACACGTAGTAGTTTTCACTTAGTACTA
65 CTGCACTTAGTACTACACACATGACCTAACCATCTGATACACGTAGTAACCTGCACTTAGTACTA
*
18144663 CACACATGATCGAAACTATCG
130 CACACATGATCGAAACTAACG
* *
18144684 GGTACGC--A-TA---GCAGTTAGTACTACACATGCGACCTAACAATCTAGTACACGTAGTAGCC
1 GGTACGCATAGTAGCTGCACTTAGTACTACACATGCGACCTATCAATCTAGTACACGTAGTAGCC
18144743 TGCACTTAGTACTACACACATGACCTAA
66 TGCACTTAGTACTACACACATGACCTAA
18144771 AACTATCTTA
Statistics
Matches: 213, Mismatches: 24, Indels: 9
0.87 0.10 0.04
Matches are distributed among these distances:
144 72 0.34
148 2 0.01
149 1 0.00
150 1 0.00
151 137 0.64
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (150 bp):
GGTACGCATAGTAGCTGCACTTAGTACTACACATGCGACCTATCAATCTAGTACACGTAGTAGCC
TGCACTTAGTACTACACACATGACCTAACCATCTGATACACGTAGTAACCTGCACTTAGTACTAC
ACACATGATCGAAACTAACG
Found at i:18144812 original size:144 final size:145
Alignment explanation
Indices: 18144398--18144814 Score: 489
Period size: 151 Copynumber: 2.8 Consensus size: 145
18144388 CATAGTAGCC
* *
18144398 TGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGTGCTAC
1 TGCACTTAGTACTACACATGCGACCTATCAATCTAGTACACGTAGTAGCCTGCACTTAGTACTAC
* * * * * * **
18144463 ACACGTTACTTATCCATCTGATACACGTAGTAACCTGCACTTAGTACTACACACGTGATCGAAGT
66 ACACATGACCTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTACACA--TGATCGAAAC
*
18144528 TAACGGGTATGCATAGTA
129 TAACGGGTACGCA-AGTA
* *
18144546 GCTTGCACTTAGTACTACACATGCGACCTATCAATCCAGTACACGTAGTAGCCTGCACTTAGCAC
1 ---TGCACTTAGTACTACACATGCGACCTATCAATCTAGTACACGTAGTAGCCTGCACTTAGTAC
* ** *
18144611 TGCACACATGACCTAACCATCTGATACACGTAGTAGTTTTCACTTAGTACTACACACATGATCGA
63 TACACACATGACCTAACCATCTGATACACGTAGTAGCCTACACTTAGTACT--ACACATGATCGA
*
18144676 AACTATCGGGTACGC-A-TA
126 AACTAACGGGTACGCAAGTA
* *
18144694 -GCAGTTAGTACTACACATGCGACCTAACAATCTAGTACACGTAGTAGCCTGCACTTAGTACTAC
1 TGCACTTAGTACTACACATGCGACCTATCAATCTAGTACACGTAGTAGCCTGCACTTAGTACTAC
* * * * * *
18144758 ACACATGACCTAAAACTATCTTAAACACATACTAGCCTACACATAGTACTACACATG
66 ACACATGACCT--AACCATCTGATACACGTAGTAGCCTACACTTAGTACTACACATG
18144815 TGTTCTCACA
Statistics
Matches: 231, Mismatches: 31, Indels: 15
0.83 0.11 0.05
Matches are distributed among these distances:
144 77 0.33
146 28 0.12
148 2 0.01
149 1 0.00
151 118 0.51
153 5 0.02
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.26
Consensus pattern (145 bp):
TGCACTTAGTACTACACATGCGACCTATCAATCTAGTACACGTAGTAGCCTGCACTTAGTACTAC
ACACATGACCTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTACACATGATCGAAACTA
ACGGGTACGCAAGTA
Found at i:18149275 original size:29 final size:28
Alignment explanation
Indices: 18149239--18149311 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 28
18149229 TCATGAGATT
*
18149239 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGAGTTTAAA--GTACA
18149269 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGAGTTTAAAGTACA
*
18149296 TGGCACAAAGTGTGCG
1 -GGCACTAAGTGTGCG
18149312 TGATTGATTA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
27 5 0.13
29 34 0.87
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.26
Consensus pattern (28 bp):
GGCACTAAGTGTGCGAGTTTAAAGTACA
Found at i:18149534 original size:174 final size:174
Alignment explanation
Indices: 18149269--18149596 Score: 611
Period size: 174 Copynumber: 1.9 Consensus size: 174
18149259 AAATTGTACA
*
18149269 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACAAAGTGTGCGTGATTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACAAAGTGTGCGCGATTGATTATTAAGCACTATG
*
18149334 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
18149399 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * *
18149443 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACAAAGTGTGCGCGATTGATTATTAAGCACTATG
18149508 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
18149573 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
18149597 ACCTTGAGTT
Statistics
Matches: 149, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 149 1.00
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACAAAGTGTGCGCGATTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:18150800 original size:50 final size:50
Alignment explanation
Indices: 18150742--18150886 Score: 144
Period size: 50 Copynumber: 3.0 Consensus size: 50
18150732 CAAAGGTCAG
18150742 TGTAGTCGATCCCTGTAACATGGGAGACTTTGACTAATAAACTGTACTAA
1 TGTAGTCGATCCCTGTAACATGGGAGACTTTGACTAATAAACTGTACTAA
** * * ** * *
18150792 TGTAGTCGATCCCTGTAACA-CAG-GTCGTAATG-C--GCAAA-GGT-C-AG
1 TGTAGTCGATCCCTGTAACATGGGAGAC-T-TTGACTAATAAACTGTACTAA
18150836 TGTAGTCGATCCCTGTAACATGGGAGACTTTGACTAATAAACTGTACTAA
1 TGTAGTCGATCCCTGTAACATGGGAGACTTTGACTAATAAACTGTACTAA
18150886 T
1 T
18150887 TGGCCCGACC
Statistics
Matches: 69, Mismatches: 16, Indels: 20
0.66 0.15 0.19
Matches are distributed among these distances:
44 23 0.33
45 4 0.06
46 4 0.06
47 6 0.09
48 4 0.06
49 4 0.06
50 24 0.35
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28
Consensus pattern (50 bp):
TGTAGTCGATCCCTGTAACATGGGAGACTTTGACTAATAAACTGTACTAA
Found at i:18156065 original size:7 final size:7
Alignment explanation
Indices: 18156055--18156110 Score: 62
Period size: 7 Copynumber: 7.7 Consensus size: 7
18156045 AAAAAAGGAA
18156055 AAAAAAG
1 AAAAAAG
18156062 AAAAAA-
1 AAAAAAG
18156068 AAAGAGAA-
1 AAA-A-AAG
18156076 AAAAAAG
1 AAAAAAG
18156083 AAAAAAG
1 AAAAAAG
18156090 AGAAAAATG
1 A-AAAAA-G
18156099 AAAAAAG
1 AAAAAAG
18156106 AAAAA
1 AAAAA
18156111 TAGAGAGGCC
Statistics
Matches: 44, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
6 5 0.11
7 22 0.50
8 15 0.34
9 2 0.05
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.02
Consensus pattern (7 bp):
AAAAAAG
Found at i:18156068 original size:21 final size:21
Alignment explanation
Indices: 18156042--18156088 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
18156032 ATTCTATTTC
18156042 AAAAAAAAAG-GAAAAAAAAG
1 AAAAAAAAAGAGAAAAAAAAG
18156062 AAAAAAAAAGAGAAAAAAAAG
1 AAAAAAAAAGAGAAAAAAAAG
18156083 AAAAAA
1 AAAAAA
18156089 GAGAAAAATG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 10 0.38
21 16 0.62
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (21 bp):
AAAAAAAAAGAGAAAAAAAAG
Found at i:18156078 original size:30 final size:31
Alignment explanation
Indices: 18156043--18156110 Score: 93
Period size: 30 Copynumber: 2.2 Consensus size: 31
18156033 TTCTATTTCA
*
18156043 AAAAAAAAGGAAAAAAAAGAAAAA-AAAAGAG
1 AAAAAAAA-GAAAAAAAAGAAAAAGAAAAAAG
*
18156074 AAAAAAAAGAAAAAAGAGAAAAATGAAAAAAG
1 AAAAAAAAGAAAAAAAAGAAAAA-GAAAAAAG
18156106 AAAAA
1 AAAAA
18156111 TAGAGAGGCC
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
30 14 0.42
31 8 0.24
32 11 0.33
ACGTcount: A:0.84, C:0.00, G:0.15, T:0.01
Consensus pattern (31 bp):
AAAAAAAAGAAAAAAAAGAAAAAGAAAAAAG
Found at i:18156081 original size:16 final size:16
Alignment explanation
Indices: 18156057--18156110 Score: 56
Period size: 18 Copynumber: 3.2 Consensus size: 16
18156047 AAAAGGAAAA
18156057 AAAAGAAAAAAAAAGAG
1 AAAA-AAAAAAAAAGAG
18156074 AAAAAAAAGAAAAAAGAG
1 -AAAAAAA-AAAAAAGAG
**
18156092 AAAAATGAAAAAAGA-
1 AAAAAAAAAAAAAGAG
18156107 AAAA
1 AAAA
18156111 TAGAGAGGCC
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
15 4 0.12
16 8 0.24
17 8 0.24
18 13 0.39
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (16 bp):
AAAAAAAAAAAAAGAG
Found at i:18156096 original size:10 final size:10
Alignment explanation
Indices: 18156044--18156096 Score: 67
Period size: 10 Copynumber: 5.5 Consensus size: 10
18156034 TCTATTTCAA
18156044 AAAAAAAG-G
1 AAAAAAAGAG
*
18156053 AAAAAAAAGAA
1 -AAAAAAAGAG
18156064 AAAAAAAGAG
1 AAAAAAAGAG
18156074 AAAAAAA-AG
1 AAAAAAAGAG
18156083 -AAAAAAGAG
1 AAAAAAAGAG
18156092 AAAAA
1 AAAAA
18156097 TGAAAAAAGA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
8 6 0.16
9 4 0.11
10 28 0.74
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (10 bp):
AAAAAAAGAG
Found at i:18156104 original size:9 final size:9
Alignment explanation
Indices: 18156043--18156096 Score: 63
Period size: 9 Copynumber: 5.6 Consensus size: 9
18156033 TTCTATTTCA
18156043 AAAAAAAAGG
1 AAAAAAAA-G
18156053 AAAAAAAAG
1 AAAAAAAAG
18156062 AAAAAAAAAGAG
1 --AAAAAAA-AG
18156074 AAAAAAAAG
1 AAAAAAAAG
*
18156083 AAAAAAGAG
1 AAAAAAAAG
18156092 AAAAA
1 AAAAA
18156097 TGAAAAAAGA
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
9 16 0.40
10 15 0.38
11 7 0.17
12 2 0.05
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:18157068 original size:44 final size:44
Alignment explanation
Indices: 18156973--18157442 Score: 296
Period size: 44 Copynumber: 10.7 Consensus size: 44
18156963 AAGATTTGGT
* * *
18156973 ATCCCTGTGTTTATAGGGAACAA-ATCGAAGATAGTAGATCTGAC
1 ATCCCTGTGTTTATAGGGAACAAGATCGAAGATAGCAG-TATGGC
* * * ** **
18157017 A-CTCCTGTGCTTACAGCGAAGTAGATCGAAGATTTCAGTATGGC
1 ATC-CCTGTGTTTATAGGGAACAAGATCGAAGATAGCAGTATGGC
* ** **
18157061 ATCCCTGTGTTTATAGGGAACAAG-TTGAAGATTTCAACATGGC
1 ATCCCTGTGTTTATAGGGAACAAGATCGAAGATAGCAGTATGGC
* *
18157104 ATCCCTGTATTTATAGGGAACAAGAT-GAAGATAGCAGATTTGGC
1 ATCCCTGTGTTTATAGGGAACAAGATCGAAGATAGCAG-TATGGC
* * * * *
18157148 ATCCCTGTGTTTATAGGGAATAA-ATCAAAGATAGCAAATCTGAC
1 ATCCCTGTGTTTATAGGGAACAAGATCGAAGATAGC-AGTATGGC
* * * ** * *** *
18157192 ATTCCTATGCTTATAGCAAAGC-AGATCAAAGATTTTAGCATGGC
1 ATCCCTGTGTTTATAGGGAA-CAAGATCGAAGATAGCAGTATGGC
* * *
18157236 ATCCCTGTGTTTATAGGGAACAAG-TTGAAGACAGCAGATTTGGC
1 ATCCCTGTGTTTATAGGGAACAAGATCGAAGATAGCAG-TATGGC
* **
18157280 ATCCCTGTGTTTATAGGGAACAA-ATCGAAGATAGCAGATCTAAC
1 ATCCCTGTGTTTATAGGGAACAAGATCGAAGATAGCAG-TATGGC
* * * * ** ** *
18157324 ATTCCTGTGCTTACAGCGAAGTAGATCGAAGA-ATTTAGCATGGC
1 ATCCCTGTGTTTATAGGGAACAAGATCGAAGATA-GCAGTATGGC
* * *
18157368 ATCCCTGTGTTTATAGGGAACAAG-TTGAAGATAGCAGATTTGCC
1 ATCCCTGTGTTTATAGGGAACAAGATCGAAGATAGCAG-TATGGC
* * * *
18157412 ATCCTTGTGCTTACAAGGAACAA-ATCGAAGA
1 ATCCCTGTGTTTATAGGGAACAAGATCGAAGA
18157443 CATAGCTGAT
Statistics
Matches: 319, Mismatches: 90, Indels: 34
0.72 0.20 0.08
Matches are distributed among these distances:
43 66 0.21
44 221 0.69
45 32 0.10
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (44 bp):
ATCCCTGTGTTTATAGGGAACAAGATCGAAGATAGCAGTATGGC
Found at i:18157255 original size:175 final size:176
Alignment explanation
Indices: 18156964--18157318 Score: 516
Period size: 175 Copynumber: 2.0 Consensus size: 176
18156954 CAAAGAAATA
* * * * *
18156964 AGATTTGGTATCCCTGTGTTTATAGGGAACAAATCGAAGATAGTAGATCTGACACTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCAAAGATAGCAAATCTGACACTCCTATGCTT
* * * * **
18157029 ACAGCGAAGTAGATCGAAGATTTCAGTATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATT
66 ACAGCAAAGCAGATCAAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGACA
*
18157094 TCA-ACATGGCATCCCTGTATTTATAGGGAACAAGAT-GAAGATAGC
131 GCAGACATGGCATCCCTGTATTTATAGGGAACAA-ATCGAAGATAGC
* *
18157139 AGATTTGGCATCCCTGTGTTTATAGGGAATAAATCAAAGATAGCAAATCTGACATTCCTATGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCAAAGATAGCAAATCTGACACTCCTATGCTT
* *
18157204 ATAGCAAAGCAGATCAAAGATTTTAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGACA
66 ACAGCAAAGCAGATCAAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGACA
** *
18157269 GCAGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGC
131 GCAGACATGGCATCCCTGTATTTATAGGGAACAAATCGAAGATAGC
18157315 AGAT
1 AGAT
18157319 CTAACATTCC
Statistics
Matches: 159, Mismatches: 19, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
175 119 0.75
176 40 0.25
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (176 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCAAAGATAGCAAATCTGACACTCCTATGCTT
ACAGCAAAGCAGATCAAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGACA
GCAGACATGGCATCCCTGTATTTATAGGGAACAAATCGAAGATAGC
Found at i:18157257 original size:132 final size:132
Alignment explanation
Indices: 18157088--18157442 Score: 521
Period size: 132 Copynumber: 2.7 Consensus size: 132
18157078 GAACAAGTTG
* * * *
18157088 AAGATTTCAACATGGCATCCCTGTATTTATAGGGAACAAGATGAAGATAGCAGATTTGGCATCCC
1 AAGATTTTAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCC
* * *
18157153 TGTGTTTATAGGGAATAAATCAAAGATAGCAAATCTGACATTCCTATGCTTATAGCAAAGCAGAT
66 TGTGTTTATAGGGAACAAATCAAAGATAGCAAATCTAACATTCCTATGCTTACAGCAAAGCAGAT
18157218 CA
131 CA
*
18157220 AAGATTTTAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGACAGCAGATTTGGCATCCC
1 AAGATTTTAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCC
* * * * *
18157285 TGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTAACATTCCTGTGCTTACAGCGAAGTAGAT
66 TGTGTTTATAGGGAACAAATCAAAGATAGCAAATCTAACATTCCTATGCTTACAGCAAAGCAGAT
*
18157350 CG
131 CA
* * *
18157352 AAGAATTTAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGCCATCCT
1 AAGATTTTAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCC
* * * *
18157417 TGTGCTTACAAGGAACAAATCGAAGA
66 TGTGTTTATAGGGAACAAATCAAAGA
18157443 CATAGCTGAT
Statistics
Matches: 202, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
132 202 1.00
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (132 bp):
AAGATTTTAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCC
TGTGTTTATAGGGAACAAATCAAAGATAGCAAATCTAACATTCCTATGCTTACAGCAAAGCAGAT
CA
Found at i:18157770 original size:206 final size:206
Alignment explanation
Indices: 18157404--18158137 Score: 1200
Period size: 206 Copynumber: 3.6 Consensus size: 206
18157394 GAAGATAGCA
* *
18157404 GATTTGCCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACG-GTT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
*
18157468 TACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
* * * ** *
18157533 CGTCTCCATATTCGACAGAGAGAAAACACATAGCAGACCTGGCCTTCATATGTTTATACTGAAGC
131 CGTCTCCATATTCGACGGAGAGTAAACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGC
*
18157598 AGATCCAAGGT
196 AGATCCAAGAT
* *
18157609 GATTTGGCCTCCTTGTGCTTACAAGGAACAAATCGAAGACATAGTTGATTTGGCTTTCACGTGCT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
18157674 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
*
18157739 CGTCTCCATATTCGACGGAGAGTAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGC
131 CGTCTCCATATTCGACGGAGAGTAAACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGC
18157804 AGATCCAAGAT
196 AGATCCAAGAT
* * *
18157815 GATTTGGCATTCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGTTTTCGCGTGCT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
* * *
18157880 TAAGATGAAGCAAATCTAAGATAATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGG
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
* * *
18157945 CGTCTCCATATTCGACGGAGGGTAAACACATAGCAGATCTAACCTTCAGATGATTAGACTGAAGC
131 CGTCTCCATATTCGACGGAGAGTAAACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGC
18158010 AGATCCAAGAT
196 AGATCCAAGAT
* * * * * *
18158021 GGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGTTGATTTGGTTTTCGCGTGCT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
*
18158086 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAAAACA
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACA
18158138 GATCAAAGAT
Statistics
Matches: 495, Mismatches: 33, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
205 58 0.12
206 437 0.88
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (206 bp):
GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
CGTCTCCATATTCGACGGAGAGTAAACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGC
AGATCCAAGAT
Found at i:18158558 original size:19 final size:19
Alignment explanation
Indices: 18158534--18158612 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
18158524 AATCTTTAAG
18158534 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
18158553 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
18158572 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
18158589 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
18158610 GAT
1 GAT
18158613 CTTGTAATCT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
21 9 0.16
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:18158564 original size:36 final size:36
Alignment explanation
Indices: 18158524--18158611 Score: 119
Period size: 36 Copynumber: 2.4 Consensus size: 36
18158514 ATGGAAATAT
18158524 AATCTTTAAGGATATG-CAATCTTAGATATGATATGC
1 AATCTTTAA-GATATGACAATCTTAGATATGATATGC
18158560 AATC-TT-AGATATGATACAATCTTAGATATGATATGC
1 AATCTTTAAGATATG--ACAATCTTAGATATGATATGC
*
18158596 AATCTTGAAGATATGA
1 AATCTTTAAGATATGA
18158612 TCTTGTAATC
Statistics
Matches: 46, Mismatches: 1, Indels: 10
0.81 0.02 0.18
Matches are distributed among these distances:
33 6 0.13
34 1 0.02
35 2 0.04
36 29 0.63
37 1 0.02
38 7 0.15
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (36 bp):
AATCTTTAAGATATGACAATCTTAGATATGATATGC
Found at i:18161081 original size:16 final size:17
Alignment explanation
Indices: 18161060--18161094 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
18161050 TAAATAATTG
*
18161060 AAATAAATAAACAA-TA
1 AAATAAACAAACAACTA
18161076 AAATAAACAAACAACTA
1 AAATAAACAAACAACTA
18161093 AA
1 AA
18161095 CCAATTAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.74, C:0.11, G:0.00, T:0.14
Consensus pattern (17 bp):
AAATAAACAAACAACTA
Found at i:18165929 original size:18 final size:18
Alignment explanation
Indices: 18165902--18165942 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
18165892 TAATTATCAC
18165902 AATT-TTTTTAAAAT-TAT
1 AATTATTTTT-AAATGTAT
*
18165919 AATTATTTTTAGATGTAT
1 AATTATTTTTAAATGTAT
18165937 AATTAT
1 AATTAT
18165943 GACAACTTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56
Consensus pattern (18 bp):
AATTATTTTTAAATGTAT
Found at i:18166155 original size:6 final size:6
Alignment explanation
Indices: 18166111--18166178 Score: 57
Period size: 6 Copynumber: 11.3 Consensus size: 6
18166101 TAAAACTTTT
* * * * * * *
18166111 TAATTAA TAATTG TAATTG TGATTA CAATTA TAA-TA TTATAA TTATTA
1 TAATT-A TAATTA TAATTA TAATTA TAATTA TAATTA TAATTA TAATTA
18166159 TAATTA TAATTA TAATTA TA
1 TAATTA TAATTA TAATTA TA
18166179 TTTTAGAGTT
Statistics
Matches: 50, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
5 4 0.08
6 41 0.82
7 5 0.10
ACGTcount: A:0.46, C:0.01, G:0.04, T:0.49
Consensus pattern (6 bp):
TAATTA
Found at i:18166270 original size:17 final size:18
Alignment explanation
Indices: 18166248--18166281 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
18166238 TAATTGTAAA
18166248 TTAAAT-TATAATTATTT
1 TTAAATGTATAATTATTT
*
18166265 TTAAATGTTTAATTATT
1 TTAAATGTATAATTATT
18166282 ACAACTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (18 bp):
TTAAATGTATAATTATTT
Found at i:18170164 original size:40 final size:39
Alignment explanation
Indices: 18170127--18170218 Score: 132
Period size: 39 Copynumber: 2.3 Consensus size: 39
18170117 GCTACTCGTT
*
18170127 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CATAGCCCGGAAT-TAGTAACTCGCA
* *
18170167 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
18170206 CAAATGCCTTCGG
1 CAAATGCCTTCGG
18170219 ATCTTAGTCC
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
39 33 0.69
40 15 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
Found at i:18170198 original size:39 final size:40
Alignment explanation
Indices: 18170108--18170271 Score: 176
Period size: 40 Copynumber: 4.1 Consensus size: 40
18170098 CGGAATTTAA
** *
18170108 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
18170148 CCGGTTATAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
18170187 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
18170227 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
18170267 CCGGA
1 CCGGA
18170272 CATCATTCAA
Statistics
Matches: 105, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
38 3 0.03
39 32 0.30
40 58 0.55
41 12 0.11
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:18178152 original size:79 final size:81
Alignment explanation
Indices: 18178050--18178233 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 81
18178040 GCTCCTCGTT
* * *
18178050 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
*
18178113 GGAT-TTAGTAAC-TCGCA
64 GGATATT-GTAACTTAGCA
* **
18178130 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
*
18178194 ATATTGTCACTTAGCA
66 ATATTGTAACTTAGCA
18178210 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
18178234 CATCATTCAA
Statistics
Matches: 91, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
78 12 0.13
79 57 0.63
80 22 0.24
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATTGTAACTTAGCA
Found at i:18178167 original size:39 final size:40
Alignment explanation
Indices: 18178050--18178233 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
18178040 GCTCCTCGTT
* *
18178050 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* * *
18178090 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
18178130 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
18178169 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAAC-TCGCA
18178210 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
18178234 CATCATTCAA
Statistics
Matches: 126, Mismatches: 12, Indels: 13
0.83 0.08 0.09
Matches are distributed among these distances:
38 2 0.02
39 49 0.39
40 65 0.52
41 10 0.08
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:18180559 original size:10 final size:10
Alignment explanation
Indices: 18180532--18180565 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
18180522 AATTTTGCAA
*
18180532 ATATATGTTT
1 ATATATTTTT
18180542 ATATTATTTTT
1 ATA-TATTTTT
18180553 ATATATTTTT
1 ATATATTTTT
18180563 ATA
1 ATA
18180566 ATTACATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (10 bp):
ATATATTTTT
Found at i:18184476 original size:12 final size:12
Alignment explanation
Indices: 18184459--18184483 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
18184449 AAAGATTGGA
18184459 AAAATAAAGAAG
1 AAAATAAAGAAG
18184471 AAAATAAAGAAG
1 AAAATAAAGAAG
18184483 A
1 A
18184484 TAGATGGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (12 bp):
AAAATAAAGAAG
Found at i:18186450 original size:12 final size:12
Alignment explanation
Indices: 18186433--18186462 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
18186423 CCTCACACGC
18186433 CCGTGTGCTAGG
1 CCGTGTGCTAGG
18186445 CCGTGTGCTAGG
1 CCGTGTGCTAGG
*
18186457 TCGTGT
1 CCGTGT
18186463 AATAGCCTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.23, G:0.40, T:0.30
Consensus pattern (12 bp):
CCGTGTGCTAGG
Found at i:18186923 original size:41 final size:44
Alignment explanation
Indices: 18186846--18186938 Score: 129
Period size: 41 Copynumber: 2.1 Consensus size: 44
18186836 ATTCTAGGAA
*
18186846 TATTTTATTTTATCTTTTAGTAGTTTATTAGATAGAATAAGAGAAT
1 TATTTTATCTTATCTTTTAGTAGTTTATT--ATAGAATAAGAGAAT
*
18186892 TATTTT-TCTTATCTTTTAGTAGTTTA-T-TAGAATAAGGGAAT
1 TATTTTATCTTATCTTTTAGTAGTTTATTATAGAATAAGAGAAT
18186933 TATTTT
1 TATTTT
18186939 CTCAATTAAC
Statistics
Matches: 45, Mismatches: 2, Indels: 5
0.87 0.04 0.10
Matches are distributed among these distances:
41 19 0.42
44 1 0.02
45 19 0.42
46 6 0.13
ACGTcount: A:0.31, C:0.03, G:0.13, T:0.53
Consensus pattern (44 bp):
TATTTTATCTTATCTTTTAGTAGTTTATTATAGAATAAGAGAAT
Found at i:18204431 original size:41 final size:42
Alignment explanation
Indices: 18204374--18204462 Score: 146
Period size: 41 Copynumber: 2.1 Consensus size: 42
18204364 ATTCTAGGAA
*
18204374 TATTTTATTTTATCTTTTAGTAGTTTATTAGAATAA-GAGAAT
1 TATTTTATCTTATCTTTTAGTAGTTTATTAGAATAAGGA-AAT
18204416 TATTTT-TCTTATCTTTTAGTAGTTTATTAGAATAAGGAAAT
1 TATTTTATCTTATCTTTTAGTAGTTTATTAGAATAAGGAAAT
18204457 TATTTT
1 TATTTT
18204463 CCCAATTAGC
Statistics
Matches: 45, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
41 37 0.82
42 8 0.18
ACGTcount: A:0.31, C:0.03, G:0.11, T:0.54
Consensus pattern (42 bp):
TATTTTATCTTATCTTTTAGTAGTTTATTAGAATAAGGAAAT
Found at i:18205596 original size:25 final size:24
Alignment explanation
Indices: 18205568--18205632 Score: 69
Period size: 24 Copynumber: 2.7 Consensus size: 24
18205558 TGGAAACTAG
*
18205568 TAAGCTCATACGAGGTAAGAA-TCGA
1 TAAGCTCATACGAGCT--GAATTCGA
* * *
18205593 TAAGCTCTTACAAGCTGAATTCGG
1 TAAGCTCATACGAGCTGAATTCGA
18205617 TAAGCTCATACGAGCT
1 TAAGCTCATACGAGCT
18205633 ATGGTGTGTC
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
23 3 0.09
24 17 0.52
25 13 0.39
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.25
Consensus pattern (24 bp):
TAAGCTCATACGAGCTGAATTCGA
Found at i:18210116 original size:13 final size:13
Alignment explanation
Indices: 18210098--18210125 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
18210088 TTTTACTAGA
18210098 CACTAAATTCGTG
1 CACTAAATTCGTG
18210111 CACTAAATTCGTG
1 CACTAAATTCGTG
18210124 CA
1 CA
18210126 AACATATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (13 bp):
CACTAAATTCGTG
Found at i:18211951 original size:79 final size:79
Alignment explanation
Indices: 18211861--18212016 Score: 294
Period size: 79 Copynumber: 2.0 Consensus size: 79
18211851 GAGACACGCT
18211861 CGTGTCTCAGGCCGTGTAGGCATTCAAAATAGGGACACACGGTCGTGTCCTAACTTGTGTCCATG
1 CGTGTCTCAGGCCGTGTAGGCATTCAAAATAGGGACACACGGTCGTGTCCTAACTTGTGTCCATG
18211926 CCCATGTAACTCCG
66 CCCATGTAACTCCG
* *
18211940 CGTGTCTCAGGCCGTGTGGGCATTCGAAATAGGGACACACGGTCGTGTCCTAACTTGTGTCCATG
1 CGTGTCTCAGGCCGTGTAGGCATTCAAAATAGGGACACACGGTCGTGTCCTAACTTGTGTCCATG
18212005 CCCATGTAACTC
66 CCCATGTAACTC
18212017 TCTGACTTGG
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
79 75 1.00
ACGTcount: A:0.21, C:0.28, G:0.26, T:0.26
Consensus pattern (79 bp):
CGTGTCTCAGGCCGTGTAGGCATTCAAAATAGGGACACACGGTCGTGTCCTAACTTGTGTCCATG
CCCATGTAACTCCG
Found at i:18213418 original size:25 final size:25
Alignment explanation
Indices: 18213381--18213452 Score: 83
Period size: 25 Copynumber: 2.9 Consensus size: 25
18213371 TACGAGCTAG
*
18213381 AATCGGTATGCTCTCATGAGCTAAA
1 AATCGGTAAGCTCTCATGAGCTAAA
* *
18213406 AATCGGTAAGCTCAT-ACGAGCTAAG
1 AATCGGTAAGCTC-TCATGAGCTAAA
* *
18213431 AATTGGGAAGCTCTCATGAGCT
1 AATCGGTAAGCTCTCATGAGCT
18213453 GAAACTGGTA
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
24 1 0.03
25 37 0.95
26 1 0.03
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (25 bp):
AATCGGTAAGCTCTCATGAGCTAAA
Found at i:18213463 original size:49 final size:50
Alignment explanation
Indices: 18213366--18213477 Score: 156
Period size: 49 Copynumber: 2.3 Consensus size: 50
18213356 GTACATGTAT
* *
18213366 GCTCATACGAGCT-AGAATCGGTATGCTCTCATGAGCTAAAAATCGGTAA
1 GCTCATACGAGCTAAGAATCGGGAAGCTCTCATGAGCTAAAAATCGGTAA
* * *
18213415 GCTCATACGAGCTAAGAATTGGGAAGCTCTCATGAGCTGAAACT-GGTAA
1 GCTCATACGAGCTAAGAATCGGGAAGCTCTCATGAGCTAAAAATCGGTAA
*
18213464 GGTCATACGAGCTA
1 GCTCATACGAGCTA
18213478 TGGTGTGTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
49 31 0.55
50 25 0.45
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.23
Consensus pattern (50 bp):
GCTCATACGAGCTAAGAATCGGGAAGCTCTCATGAGCTAAAAATCGGTAA
Found at i:18217721 original size:43 final size:42
Alignment explanation
Indices: 18217655--18217813 Score: 169
Period size: 43 Copynumber: 3.7 Consensus size: 42
18217645 AGCATATACA
* * *
18217655 ATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAACATCG
1 ATGCCAATGTCCCAGACAGGGTCTTACACGTAATCAAA-ATCG
* * * *
18217698 ATGCCACTGTCCCAGACAGGGTCTTACACGAAAT-TAGATACG
1 ATGCCAATGTCCCAGACAGGGTCTTACACGTAATCAAAAT-CG
* * *
18217740 ATGCCAATGTTCCAGACATGGTCTTACACGTAAAACAAAAGTCG
1 ATGCCAATGTCCCAGACAGGGTCTTACACGT-AATCAAAA-TCG
18217784 ATGCCAATGTCCCAGAC-GTGGTCTTACACG
1 ATGCCAATGTCCCAGACAG-GGTCTTACACG
18217814 ATATCACATA
Statistics
Matches: 95, Mismatches: 16, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
41 2 0.02
42 30 0.32
43 31 0.33
44 31 0.33
45 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.23
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACAGGGTCTTACACGTAATCAAAATCG
Found at i:18217799 original size:44 final size:42
Alignment explanation
Indices: 18217655--18217813 Score: 185
Period size: 44 Copynumber: 3.7 Consensus size: 42
18217645 AGCATATACA
* * *
18217655 ATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAACATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAACAAA-ATCG
* * ** *
18217698 ATGCCACTGTCCCAGACAGGGTCTTACACG-AAATTAGATACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAACAAAAT-CG
*
18217740 ATGCCAATGTTCCAGACATGGTCTTACACGTAAAACAAAAGTCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGT-AAACAAAA-TCG
*
18217784 ATGCCAATGTCCCAGACGTGGTCTTACACG
1 ATGCCAATGTCCCAGACATGGTCTTACACG
18217814 ATATCACATA
Statistics
Matches: 96, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
41 2 0.02
42 32 0.33
43 26 0.27
44 35 0.36
45 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.23
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAAACAAAATCG
Found at i:18217807 original size:86 final size:85
Alignment explanation
Indices: 18217650--18217814 Score: 235
Period size: 86 Copynumber: 1.9 Consensus size: 85
18217640 CAGAAAGCAT
* * *
18217650 ATACAATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAACATCGATGCCACTGTCCCAGAC
1 ATACAATGCCAACGTCCCAGACATGGTCTTACACGTAAACAAACATCGATGCCAATGTCCCAGAC
18217715 AGGGTCTTACACGAAATTAG
66 AGGGTCTTACACGAAATTAG
* * *
18217735 ATACGATGCCAATGTTCCAGACATGGTCTTACACGTAAAACAAA-AGTCGATGCCAATGTCCCAG
1 ATACAATGCCAACGTCCCAGACATGGTCTTACACGT-AAACAAACA-TCGATGCCAATGTCCCAG
18217799 AC-GTGGTCTTACACGA
64 ACAG-GGTCTTACACGA
18217815 TATCACATAT
Statistics
Matches: 71, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
85 34 0.48
86 37 0.52
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.22
Consensus pattern (85 bp):
ATACAATGCCAACGTCCCAGACATGGTCTTACACGTAAACAAACATCGATGCCAATGTCCCAGAC
AGGGTCTTACACGAAATTAG
Found at i:18219149 original size:35 final size:35
Alignment explanation
Indices: 18219100--18219230 Score: 172
Period size: 35 Copynumber: 3.7 Consensus size: 35
18219090 TAGATGTTAC
* *
18219100 AGTATTGGTGTTGTGGCAGGAAGTTAAATGAATGA
1 AGTATTGATGTTGTGGCAGGATGTTAAATGAATGA
* *
18219135 AGTATTGATTTTGTGGCACGATGTTAAATGAATGA
1 AGTATTGATGTTGTGGCAGGATGTTAAATGAATGA
* * ** *
18219170 AGTATTGATGTTGAGGTAGGATGTTATTTGAAAGA
1 AGTATTGATGTTGTGGCAGGATGTTAAATGAATGA
*
18219205 AGTATCGATGTTGTGGCAGGATGTTA
1 AGTATTGATGTTGTGGCAGGATGTTA
18219231 TTTGAAAGAG
Statistics
Matches: 82, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 82 1.00
ACGTcount: A:0.30, C:0.04, G:0.31, T:0.35
Consensus pattern (35 bp):
AGTATTGATGTTGTGGCAGGATGTTAAATGAATGA
Found at i:18219231 original size:35 final size:35
Alignment explanation
Indices: 18219100--18219254 Score: 168
Period size: 35 Copynumber: 4.5 Consensus size: 35
18219090 TAGATGTTAC
* * *
18219100 AGTATTGGTGTTGTGGCAGGAAGTTAAATGAATGA
1 AGTATTGATGTTGTGGCAGGATGTTAAATGAAAGA
* * *
18219135 AGTATTGATTTTGTGGCACGATGTTAAATGAATGA
1 AGTATTGATGTTGTGGCAGGATGTTAAATGAAAGA
* * **
18219170 AGTATTGATGTTGAGGTAGGATGTTATTTGAAAGA
1 AGTATTGATGTTGTGGCAGGATGTTAAATGAAAGA
* **
18219205 AGTATCGATGTTGTGGCAGGATGTTATTTGAAAG-
1 AGTATTGATGTTGTGGCAGGATGTTAAATGAAAGA
* *
18219239 AGGATTGGTGTTGTGG
1 AGTATTGATGTTGTGG
18219255 TGGGATTTTT
Statistics
Matches: 103, Mismatches: 17, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
34 13 0.13
35 90 0.87
ACGTcount: A:0.28, C:0.03, G:0.33, T:0.35
Consensus pattern (35 bp):
AGTATTGATGTTGTGGCAGGATGTTAAATGAAAGA
Found at i:18223364 original size:42 final size:42
Alignment explanation
Indices: 18223317--18223463 Score: 194
Period size: 42 Copynumber: 3.5 Consensus size: 42
18223307 AGTGATATAT
18223317 CAGGCTTATTGCCTAGCAGGCTTTGATGCCGATGTATGATAC
1 CAGGCTTATTGCCTAGCAGGCTTTGATGCCGATGTATGATAC
*
18223359 CAGGCTTATTGCCTAGCAGGCTTTGATGCC-AGTGTATGATAT
1 CAGGCTTATTGCCTAGCAGGCTTTGATGCCGA-TGTATGATAC
* *
18223401 CAAGCTTATTGCCTAGCAGGCTTT-ATGCCGGTGTATTGA-ATC
1 CAGGCTTATTGCCTAGCAGGCTTTGATGCCGATGTA-TGATA-C
* *
18223443 CA-GTTTATTACCTAGCAGGCT
1 CAGGCTTATTGCCTAGCAGGCT
18223464 CTGTGCCTGT
Statistics
Matches: 95, Mismatches: 6, Indels: 9
0.86 0.05 0.08
Matches are distributed among these distances:
41 28 0.29
42 67 0.71
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.33
Consensus pattern (42 bp):
CAGGCTTATTGCCTAGCAGGCTTTGATGCCGATGTATGATAC
Found at i:18234589 original size:30 final size:29
Alignment explanation
Indices: 18234489--18234715 Score: 199
Period size: 29 Copynumber: 7.8 Consensus size: 29
18234479 TGCTAAACGG
* * *
18234489 TGGTCGTAATCATCCCTTTTCCTATTCGA
1 TGGTCGAAACCATCCCTTTTCATATTCGA
18234518 TGGTCGAAACCATCCCTTTTCATATTCGA
1 TGGTCGAAACCATCCCTTTTCATATTCGA
* *
18234547 TGGTCGAAACCATCCCTTTTCATCAATCGG
1 TGGTCGAAACCATCCCTTTTCAT-ATTCGA
** *
18234577 TGGTCGTCACCATCCCTTTTCAT-TATCTA
1 TGGTCGAAACCATCCCTTTTCATAT-TCGA
* * * *
18234606 TAGCCGAAGCTATCCCTTTTCATATTCGA
1 TGGTCGAAACCATCCCTTTTCATATTCGA
* * * *
18234635 TAG-CCAAAGCTATCCCTTTTCATATTCAA
1 TGGTCGAAA-CCATCCCTTTTCATATTCGA
** *
18234664 TGGTCGTCACCATCCCTTTTCATAATCGA
1 TGGTCGAAACCATCCCTTTTCATATTCGA
* * *
18234693 TAGT-TAAAGCTATCCCTTTTCAT
1 TGGTCGAAA-CCATCCCTTTTCAT
18234716 TAGTCGACGA
Statistics
Matches: 160, Mismatches: 32, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
28 4 0.03
29 128 0.80
30 28 0.17
ACGTcount: A:0.23, C:0.28, G:0.12, T:0.37
Consensus pattern (29 bp):
TGGTCGAAACCATCCCTTTTCATATTCGA
Found at i:18236057 original size:26 final size:26
Alignment explanation
Indices: 18236028--18236142 Score: 79
Period size: 26 Copynumber: 4.3 Consensus size: 26
18236018 ATAGTTTACC
*
18236028 AAATTACTAAAATACCCCC-AGTTGTA
1 AAATTACCAAAATACCCCCGA-TTGTA
* ** * *
18236054 AAATTACCAAAGTATCCCTGGTTTATA
1 AAATTACCAAAATA-CCCCCGATTGTA
* **
18236081 AAATTACCGAAATACCATCGATTGTA
1 AAATTACCAAAATACCCCCGATTGTA
* * *
18236107 AAATTACTAAAATGCCCTCGATTTGTA
1 AAATTACCAAAATACCCCCGA-TTGTA
*
18236134 GAATTACCA
1 AAATTACCA
18236143 TTTTAGCCTC
Statistics
Matches: 68, Mismatches: 18, Indels: 5
0.75 0.20 0.05
Matches are distributed among these distances:
26 37 0.54
27 31 0.46
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (26 bp):
AAATTACCAAAATACCCCCGATTGTA
Found at i:18236152 original size:27 final size:27
Alignment explanation
Indices: 18236121--18236722 Score: 698
Period size: 27 Copynumber: 22.3 Consensus size: 27
18236111 TACTAAAATG
** *
18236121 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
18236148 GCCTCGATTTATAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
*
18236175 CCCTCGATATGTA-A-AATTATCGTTTTA
1 CCCTCGAT-T-TACAGAATTACCGTTTTA
* *
18236202 CCCTCGATTTATAGAATTACTGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
*
18236229 CCCTCAATTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
18236256 CCATTGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* **
18236283 CCCTCGGTTTACAGAATTACTATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
*
18236310 CCCTCGATTTAAAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
**
18236337 CCCTC-AGTTTACAGAATTACTATTTT-
1 CCCTCGA-TTTACAGAATTACCGTTTTA
18236363 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
18236390 CCCTC-AGTTTATAGAATTACTGTTTTA
1 CCCTCGA-TTTACAGAATTACCGTTTTA
18236417 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
** * *
18236444 CCCTCGATTTGTAAAATTATCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
*
18236471 CCCTCGATTTACAGAATTACCGTTATA
1 CCCTCGATTTACAGAATTACCGTTTTA
**
18236498 CCCTC-AGTTTACAGAATTACTATTTTA
1 CCCTCGA-TTTACAGAATTACCGTTTTA
*
18236525 CCCTCGATTTATAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
*
18236552 CCCTC-AGTTTACAGAATTACTGTTTTA
1 CCCTCGA-TTTACAGAATTACCGTTTTA
*
18236579 CCCTCGATTTACAGAATTATCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* ** * *
18236606 CCCTCGTTTTGTAAAAGTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
** * * *
18236633 CCCTTTATTTACAAAATTACTGGTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
18236660 CCCTC-AGTTTACAAAATTATCGTTTTA
1 CCCTCGA-TTTACAGAATTACCGTTTTA
*
18236687 CCCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
*
18236714 CCCTTGATT
1 CCCTCGATT
18236723 GTGAAATTAC
Statistics
Matches: 490, Mismatches: 70, Indels: 30
0.83 0.12 0.05
Matches are distributed among these distances:
25 2 0.00
26 29 0.06
27 451 0.92
28 6 0.01
29 2 0.00
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACCGTTTTA
Found at i:18236790 original size:54 final size:54
Alignment explanation
Indices: 18236727--18236922 Score: 234
Period size: 54 Copynumber: 3.6 Consensus size: 54
18236717 TTGATTGTGA
* * * *
18236727 AATTACTAAAATACCCCTGTAGGGTAGAATTTCTGAAATACCCCTATAGGGTAG
1 AATTACTAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
18236781 AATTACTAAAATACCCTTATAGGATAGAATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
18236835 AATTA-TCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAAGGTAG
1 AATTACT-AAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * *
18236889 AATTA-TCGAGATACCCTTGTGGGGTAAAATTACC
1 AATTACT-AAAATACCCTTGTAGGGTAGAATTACC
18236923 ATTTTGCCCC
Statistics
Matches: 124, Mismatches: 17, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
53 1 0.01
54 123 0.99
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (54 bp):
AATTACTAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
Found at i:18236826 original size:81 final size:81
Alignment explanation
Indices: 18236727--18236920 Score: 232
Period size: 81 Copynumber: 2.4 Consensus size: 81
18236717 TTGATTGTGA
* * *
18236727 AATTACTAAAATACCCCTGTAGGGTAGAATT-TCTGAAATACCCCTATAGGGTAGAATTACTAAA
1 AATTACCAAAATACCCCTGTAGGGTAGAATTATC-GAAATACCCCTATAGGGTAGAAATACCAAA
18236791 ATA-CCCT-TATAGGATAG
65 ATACCCCTGTA-AGG-TAG
* * *
18236808 AATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAA
1 AATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCAAAA
18236873 TACCCCTGTAAGGTAG
66 TACCCCTGTAAGGTAG
* * * * * *
18236889 AATTATCGAGATACCCTTGTGGGGTAAAATTA
1 AATTACCAAAATACCCCTGTAGGGTAGAATTA
18236921 CCATTTTGCC
Statistics
Matches: 98, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
81 87 0.89
82 9 0.09
83 2 0.02
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.27
Consensus pattern (81 bp):
AATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCAAAA
TACCCCTGTAAGGTAG
Found at i:18236902 original size:27 final size:27
Alignment explanation
Indices: 18236735--18236920 Score: 205
Period size: 27 Copynumber: 6.9 Consensus size: 27
18236725 GAAATTACTA
18236735 AAATACCCCTGTAGGGTAGAATT-TCTG
1 AAATACCCCTGTAGGGTAGAATTATC-G
* *
18236762 AAATACCCCTATAGGGTAGAATTA-CTA
1 AAATACCCCTGTAGGGTAGAATTATC-G
* * * * *
18236789 AAATACCCTTATAGGATAGAATTACCA
1 AAATACCCCTGTAGGGTAGAATTATCG
18236816 AAATACCCCTGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTATCG
* * *
18236843 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTATCG
*
18236870 AAATACCCCTGTAAGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTATCG
* * * *
18236897 AGATACCCTTGTGGGGTAAAATTA
1 AAATACCCCTGTAGGGTAGAATTA
18236921 CCATTTTGCC
Statistics
Matches: 136, Mismatches: 21, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
27 135 0.99
28 1 0.01
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTATCG
Found at i:18237164 original size:27 final size:26
Alignment explanation
Indices: 18237125--18237203 Score: 104
Period size: 27 Copynumber: 3.0 Consensus size: 26
18237115 GGAAGCGTTC
*
18237125 TGGTGGCTATGCCACAAATATCTGTTT
1 TGGTGGCTCTGCCAC-AATATCTGTTT
*
18237152 TGGTGGCTCTGCCACAATATCTATATT
1 TGGTGGCTCTGCCACAATATCTGT-TT
* *
18237179 TGGTGACTCTGTCACAATATCTGTT
1 TGGTGGCTCTGCCACAATATCTGTT
18237204 GACCGATCGA
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
26 9 0.20
27 37 0.80
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.38
Consensus pattern (26 bp):
TGGTGGCTCTGCCACAATATCTGTTT
Found at i:18237536 original size:27 final size:27
Alignment explanation
Indices: 18237514--18237587 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
18237504 TAGGTGGGTT
*
18237514 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
18237541 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
18237568 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
18237588 CAGCCATACT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.12
27 36 0.86
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:18237739 original size:6 final size:6
Alignment explanation
Indices: 18237730--18237775 Score: 69
Period size: 6 Copynumber: 7.8 Consensus size: 6
18237720 CTGTCACGTA
18237730 ATTCTG ATTCTG ATTCTG ATTCT- -TTACTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
18237776 CATTGTGGTT
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
4 2 0.05
5 2 0.05
6 31 0.84
7 2 0.05
ACGTcount: A:0.17, C:0.17, G:0.13, T:0.52
Consensus pattern (6 bp):
ATTCTG
Found at i:18241996 original size:52 final size:52
Alignment explanation
Indices: 18241916--18242071 Score: 244
Period size: 52 Copynumber: 3.0 Consensus size: 52
18241906 AGATCGAAAC
*
18241916 TTGCGATCTAGTCTC-AGCAGAGCATCCATGGGTATGGTCATGAATCCTTATA
1 TTGCGATCTAGTCTCGA-CAGAGCATCCATGGGTATGGTCATGAATTCTTATA
* *
18241968 TTGCGATCTAGTTTCGACAGAGCGTCCATGGGTATGGTCATGAATTCTTATA
1 TTGCGATCTAGTCTCGACAGAGCATCCATGGGTATGGTCATGAATTCTTATA
* *
18242020 TTGCGATCTAGTCTCGATAGAGCATCCATGTGTAT-GTCATGAATTCTTATA
1 TTGCGATCTAGTCTCGACAGAGCATCCATGGGTATGGTCATGAATTCTTATA
18242071 T
1 T
18242072 GTGGTCAGCC
Statistics
Matches: 96, Mismatches: 7, Indels: 3
0.91 0.07 0.03
Matches are distributed among these distances:
51 17 0.18
52 78 0.81
53 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.35
Consensus pattern (52 bp):
TTGCGATCTAGTCTCGACAGAGCATCCATGGGTATGGTCATGAATTCTTATA
Found at i:18248477 original size:13 final size:13
Alignment explanation
Indices: 18248459--18248485 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
18248449 TTGTGTGTTA
18248459 TTTATTTTATTTT
1 TTTATTTTATTTT
18248472 TTTATTTTATTTT
1 TTTATTTTATTTT
18248485 T
1 T
18248486 CACAAATTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTATTTTATTTT
Found at i:18255983 original size:80 final size:79
Alignment explanation
Indices: 18255899--18256070 Score: 211
Period size: 79 Copynumber: 2.2 Consensus size: 79
18255889 GGACTAAGAT
*
18255899 CCGAAGGCATTTGTGCGAGAT-ACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATGACAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
18255963 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * ** * * * *
18255979 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATGACAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
18256044 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
18256058 CCGAAGGCATTTG
1 CCGAAGGCATTTG
18256071 AACGAGGAGC
Statistics
Matches: 78, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
79 38 0.49
80 37 0.47
81 3 0.04
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATGACAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:18256050 original size:39 final size:39
Alignment explanation
Indices: 18255846--18256068 Score: 200
Period size: 40 Copynumber: 5.6 Consensus size: 39
18255836 TTGAATGCTG
* * * * *
18255846 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
18255886 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
18255925 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* **
18255966 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
18256006 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
18256045 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
18256069 TGAACGAGGA
Statistics
Matches: 155, Mismatches: 20, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
39 39 0.25
40 102 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:18256088 original size:79 final size:80
Alignment explanation
Indices: 18255926--18256103 Score: 198
Period size: 79 Copynumber: 2.2 Consensus size: 80
18255916 AGATACAAAT
* * * *
18255926 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** ** *
18255991 GTGCGAGTTGTTAAA
66 GAACGAGGAGCTAAA
* * * * *
18256006 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
18256070 GAACGAGGAGCTATA
66 GAACGAGGAGCTAAA
*
18256085 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
18256104 TACGTGATTT
Statistics
Matches: 81, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
78 14 0.17
79 49 0.60
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGGAGCTAAA
Found at i:18258551 original size:12 final size:12
Alignment explanation
Indices: 18258534--18258558 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
18258524 ATTTTTGTTG
18258534 AGCTTGCTCGTA
1 AGCTTGCTCGTA
18258546 AGCTTGCTCGTA
1 AGCTTGCTCGTA
18258558 A
1 A
18258559 TGTCGATTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.32
Consensus pattern (12 bp):
AGCTTGCTCGTA
Found at i:18272463 original size:28 final size:29
Alignment explanation
Indices: 18272430--18272530 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
18272420 TATAGTAAGT
* * *
18272430 CCGCACACTTAGTGTTATATAA-TCGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
*
18272458 TCGCACACTTAGTGCTATACAACTTGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
*
18272487 CCGCACACTTAGTGCTATACAATTTGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
18272516 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
18272531 CAATTTCATG
Statistics
Matches: 66, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
28 19 0.29
29 47 0.71
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.27
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATACAACTTGAAC
Found at i:18277771 original size:79 final size:82
Alignment explanation
Indices: 18277654--18277838 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 82
18277644 GCTACTCGTT
* * * *
18277654 CAAATGCCTTCGGGACATAACCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
18277717 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
18277734 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
18277797 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
18277814 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
18277839 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.59
80 34 0.38
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:18277838 original size:40 final size:40
Alignment explanation
Indices: 18277635--18277838 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
18277625 CGGAATTTAA
** * *
18277635 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAAC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
18277675 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
18277715 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
18277754 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
18277794 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
18277834 CCGGA
1 CCGGA
18277839 CATCATTCAA
Statistics
Matches: 140, Mismatches: 17, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 93 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:18283552 original size:28 final size:29
Alignment explanation
Indices: 18283519--18283619 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
18283509 TATAGTAAGT
* * *
18283519 CCGCACACTTAGTGTTATATAA-TCGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
*
18283547 TCGCACACTTAGTGCTATACAACTTGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
*
18283576 CCGCACACTTAGTGCTATACAATTTGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
18283605 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
18283620 CAATTTCATG
Statistics
Matches: 66, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
28 19 0.29
29 47 0.71
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.27
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATACAACTTGAAC
Found at i:18289342 original size:26 final size:26
Alignment explanation
Indices: 18289278--18289346 Score: 102
Period size: 26 Copynumber: 2.7 Consensus size: 26
18289268 AATCAAATCA
* *
18289278 AATATATAAAACAATTTAAAATAAAT
1 AATATATAAAATAGTTTAAAATAAAT
*
18289304 AGTATATAAAATAGTTTAAAATAAAT
1 AATATATAAAATAGTTTAAAATAAAT
*
18289330 AATATATATAATAGTTT
1 AATATATAAAATAGTTT
18289347 GAAGCTAAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.58, C:0.01, G:0.04, T:0.36
Consensus pattern (26 bp):
AATATATAAAATAGTTTAAAATAAAT
Found at i:18291079 original size:45 final size:46
Alignment explanation
Indices: 18291023--18291138 Score: 139
Period size: 45 Copynumber: 2.6 Consensus size: 46
18291013 TTCGATCTAT
* * *
18291023 TCCACTACAACTTCAGGGAA-ATGAGATTCGCTATCTTCAACCTGC
1 TCCACTGCAACTTCAGGGAAGATAAGATTCACTATCTTCAACCTGC
* * * * *
18291068 TCTACTGCAACTTTA-GGAAGATAAGGTTTACTATCTTCAATCTGC
1 TCCACTGCAACTTCAGGGAAGATAAGATTCACTATCTTCAACCTGC
18291113 TCCACTGCAACTTCAGGG-AGATAAGA
1 TCCACTGCAACTTCAGGGAAGATAAGA
18291139 CTTGAGGCTT
Statistics
Matches: 58, Mismatches: 11, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
44 4 0.07
45 52 0.90
46 2 0.03
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.28
Consensus pattern (46 bp):
TCCACTGCAACTTCAGGGAAGATAAGATTCACTATCTTCAACCTGC
Found at i:18291277 original size:232 final size:232
Alignment explanation
Indices: 18290993--18291466 Score: 687
Period size: 232 Copynumber: 2.0 Consensus size: 232
18290983 TTCAATGGCG
* *
18290993 TAGGATTTGTGATTTGTATCTTCGATCTATTCCACTACAACTTCAGGGAAATGAGATTCGCTATC
1 TAGGA-TT-TGATTTGTAGCTTCGATCTATTCCACTACAACTTCAAGGAAATGAGATTCGCTATC
* * *
18291058 TTCAACCTGCTCTACTGCAACTTTAGGAAGATAAGGTTTACTATCTTCAATCTGCTCCACTGCAA
64 TTCAACCTGCTCTACTACAACTTCAGGAAGATAAGGTTTACTATCTTCAATCTGCTCCACTACAA
* * * ** * *
18291123 CTTCAGGGAGATAAGACTTGAGGCTTTAATCTGCTCCACTACAACTTCAGGGAGACAAGATTTGT
129 CTTCAGGGAGATAAGACTCGAGGCTTTAATCTACACCACTACAACTTCAAAGAGACAAGATTCGC
* * * * *
18291188 CGTGGTGGCTTAATCTAACCTTCTGCAACTTTAGAGGTA
194 CATAGTGGCTTAATCCAACCTACTACAACTTTAGAGGTA
* * * *
18291227 TAGGATTTGATTTGTAGCTTTGATCTATTCCATTGCAACTTTAAGGAAATGAGATTCGCTATCTT
1 TAGGATTTGATTTGTAGCTTCGATCTATTCCACTACAACTTCAAGGAAATGAGATTCGCTATCTT
* * *
18291292 CAACCTGCTCTACTACAACTTCAGGGAGATAAGGTTTGCTATCTTCAGTCTGCTCCACTACAACT
66 CAACCTGCTCTACTACAACTTCAGGAAGATAAGGTTTACTATCTTCAATCTGCTCCACTACAACT
* *
18291357 TCAGGGAGGTAAGACTCGTGGCTTTAATCTACACCACTACAACTTCAAAGAGACAAGATTCGCCA
131 TCAGGGAGATAAGACTCGAGGCTTTAATCTACACCACTACAACTTCAAAGAGACAAGATTCGCCA
*
18291422 TAGTGGCTTAATCCGACCTACTACAACTTTAGAGGTA
196 TAGTGGCTTAATCCAACCTACTACAACTTTAGAGGTA
18291459 TAGGATTT
1 TAGGATTT
18291467 ATGGTTTCAC
Statistics
Matches: 213, Mismatches: 27, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
232 206 0.97
233 2 0.01
234 5 0.02
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.32
Consensus pattern (232 bp):
TAGGATTTGATTTGTAGCTTCGATCTATTCCACTACAACTTCAAGGAAATGAGATTCGCTATCTT
CAACCTGCTCTACTACAACTTCAGGAAGATAAGGTTTACTATCTTCAATCTGCTCCACTACAACT
TCAGGGAGATAAGACTCGAGGCTTTAATCTACACCACTACAACTTCAAAGAGACAAGATTCGCCA
TAGTGGCTTAATCCAACCTACTACAACTTTAGAGGTA
Found at i:18291334 original size:45 final size:45
Alignment explanation
Indices: 18291284--18291369 Score: 136
Period size: 45 Copynumber: 1.9 Consensus size: 45
18291274 AATGAGATTC
*
18291284 GCTATCTTCAACCTGCTCTACTACAACTTCAGGGAGATAAGGTTT
1 GCTATCTTCAACCTGCTCCACTACAACTTCAGGGAGATAAGGTTT
** *
18291329 GCTATCTTCAGTCTGCTCCACTACAACTTCAGGGAGGTAAG
1 GCTATCTTCAACCTGCTCCACTACAACTTCAGGGAGATAAG
18291370 ACTCGTGGCT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.29
Consensus pattern (45 bp):
GCTATCTTCAACCTGCTCCACTACAACTTCAGGGAGATAAGGTTT
Found at i:18303566 original size:96 final size:96
Alignment explanation
Indices: 18303448--18303649 Score: 395
Period size: 96 Copynumber: 2.1 Consensus size: 96
18303438 AGAGATAACA
18303448 AATAAATAAATAAACAAGTTAAGATTTATAAGAGTTACCAATTGAATAATAAAAAAGAAAAATCA
1 AATAAATAAATAAACAAGTTAAGATTTATAAGAGTTACCAATTGAATAATAAAAAAGAAAAATCA
18303513 AATCAAATATATAAAACAATTTAAAATAAAT
66 AATCAAATATATAAAACAATTTAAAATAAAT
18303544 AATAAATAAATAAACAAGTTAAGATTTATAAGAGTTACCAATTGAATAATAAAAAAGAAAAATCA
1 AATAAATAAATAAACAAGTTAAGATTTATAAGAGTTACCAATTGAATAATAAAAAAGAAAAATCA
18303609 AATCAAATATATAAAACAATTTAAAATAAAT
66 AATCAAATATATAAAACAATTTAAAATAAAT
*
18303640 AATATATAAA
1 AATAAATAAA
18303650 ACAGTTTAAA
Statistics
Matches: 105, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
96 105 1.00
ACGTcount: A:0.62, C:0.06, G:0.06, T:0.26
Consensus pattern (96 bp):
AATAAATAAATAAACAAGTTAAGATTTATAAGAGTTACCAATTGAATAATAAAAAAGAAAAATCA
AATCAAATATATAAAACAATTTAAAATAAAT
Found at i:18303643 original size:26 final size:26
Alignment explanation
Indices: 18303614--18303674 Score: 113
Period size: 26 Copynumber: 2.3 Consensus size: 26
18303604 AATCAAATCA
18303614 AATATATAAAACAATTTAAAATAAAT
1 AATATATAAAACAATTTAAAATAAAT
*
18303640 AATATATAAAACAGTTTAAAATAAAT
1 AATATATAAAACAATTTAAAATAAAT
18303666 AATATATAA
1 AATATATAA
18303675 TAGTTTCAAG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.64, C:0.03, G:0.02, T:0.31
Consensus pattern (26 bp):
AATATATAAAACAATTTAAAATAAAT
Found at i:18303672 original size:28 final size:27
Alignment explanation
Indices: 18303602--18303674 Score: 105
Period size: 26 Copynumber: 2.7 Consensus size: 27
18303592 ATAAAAAAGA
18303602 AAAATCAAATCAAATATATAAAACAATTT
1 AAAAT-AAAT-AAATATATAAAACAATTT
*
18303631 AAAATAAAT-AATATATAAAACAGTTT
1 AAAATAAATAAATATATAAAACAATTT
18303657 AAAATAAAT-AATATATAA
1 AAAATAAATAAATATATAA
18303675 TAGTTTCAAG
Statistics
Matches: 43, Mismatches: 1, Indels: 3
0.91 0.02 0.06
Matches are distributed among these distances:
26 34 0.79
28 4 0.09
29 5 0.12
ACGTcount: A:0.64, C:0.05, G:0.01, T:0.29
Consensus pattern (27 bp):
AAAATAAATAAATATATAAAACAATTT
Found at i:18304967 original size:7 final size:7
Alignment explanation
Indices: 18304955--18304981 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
18304945 TGGACTGTTG
18304955 ATTATTT
1 ATTATTT
18304962 ATTATTT
1 ATTATTT
18304969 ATTATTT
1 ATTATTT
18304976 ATTATT
1 ATTATT
18304982 GGTTTTTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (7 bp):
ATTATTT
Found at i:18306833 original size:18 final size:18
Alignment explanation
Indices: 18306810--18306844 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
18306800 TAAGTAAGAA
18306810 CCTCACACCTAAACTTTC
1 CCTCACACCTAAACTTTC
*
18306828 CCTCACACTTAAACTTT
1 CCTCACACCTAAACTTT
18306845 TGCTTGTCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.40, G:0.00, T:0.31
Consensus pattern (18 bp):
CCTCACACCTAAACTTTC
Found at i:18310019 original size:27 final size:27
Alignment explanation
Indices: 18309981--18310050 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 27
18309971 GTACCTAGAC
18309981 CCCCTA-ATTGATAAAATGACTAAAATG
1 CCCCTATA-TGATAAAATGACTAAAATG
*
18310008 CCCCTATATGATAAAATGACTGAAATG
1 CCCCTATATGATAAAATGACTAAAATG
18310035 CCCCTTTATATGATAA
1 CCCC--TATATGATAA
18310051 GTGACTATTT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
27 28 0.72
28 1 0.03
29 10 0.26
ACGTcount: A:0.40, C:0.20, G:0.11, T:0.29
Consensus pattern (27 bp):
CCCCTATATGATAAAATGACTAAAATG
Found at i:18310850 original size:18 final size:18
Alignment explanation
Indices: 18310827--18310866 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
18310817 TAGCAGTAGG
*
18310827 AAAAGACACAGGTTTTCA
1 AAAAGACAAAGGTTTTCA
* *
18310845 AAAAGATAAATGTTTTCA
1 AAAAGACAAAGGTTTTCA
18310863 AAAA
1 AAAA
18310867 TACCACAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.53, C:0.10, G:0.12, T:0.25
Consensus pattern (18 bp):
AAAAGACAAAGGTTTTCA
Found at i:18313660 original size:27 final size:27
Alignment explanation
Indices: 18313608--18313670 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
18313598 GTACCTAGAC
*
18313608 CCCCTA-ATTGATAAAATGACCGAAATG
1 CCCCTATA-TGATAAAATGACCAAAATG
**
18313635 CCCCTATATGATAAAATGAGTAAAATG
1 CCCCTATATGATAAAATGACCAAAATG
*
18313662 CCCTTATAT
1 CCCCTATAT
18313671 ATGACAAGTG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.40, C:0.21, G:0.13, T:0.27
Consensus pattern (27 bp):
CCCCTATATGATAAAATGACCAAAATG
Found at i:18314863 original size:43 final size:43
Alignment explanation
Indices: 18314816--18314973 Score: 187
Period size: 43 Copynumber: 3.7 Consensus size: 43
18314806 ATTGTTGAGA
*
18314816 TGTGATTACATGTAACACCATGTCTGGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
*
18314859 TGTGATTACATGTAAGACCATTTCTGGGACATTGGCATCAT-TA-
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCAT--TGTAT
* *** *
18314902 TATGATTTTGTGTAAGACCATGTCTGGGACATTGGCATCG-AT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
* *
18314944 ATGTGATAACATGTAAGACCATATCTGGGA
1 -TGTGATTACATGTAAGACCATGTCTGGGA
18314974 TATGGCTTTG
Statistics
Matches: 96, Mismatches: 14, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
41 1 0.01
43 92 0.96
44 2 0.02
45 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
Found at i:18317969 original size:3 final size:3
Alignment explanation
Indices: 18317961--18318010 Score: 57
Period size: 3 Copynumber: 16.7 Consensus size: 3
18317951 CAACTAAAAT
* * *
18317961 TAA TAA TAA TAA GAA TAG GAA TAA TAA TAA TAA TAAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA
18318007 -AA TA
1 TAA TA
18318011 TCAAAATTTG
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
2 2 0.05
3 34 0.87
4 3 0.08
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (3 bp):
TAA
Found at i:18317985 original size:18 final size:15
Alignment explanation
Indices: 18317955--18318010 Score: 67
Period size: 18 Copynumber: 3.5 Consensus size: 15
18317945 CTTTTTCAAC
*
18317955 TAAAATTAATAATAA
1 TAAAATAAATAATAA
18317970 TAAGAATAGGAATAATAA
1 TAA-AATA--AATAATAA
18317988 TAATAATAAATAATAA
1 TAA-AATAAATAATAA
18318004 TAAAATA
1 TAAAATA
18318011 TCAAAATTTG
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
15 7 0.19
16 14 0.39
18 15 0.42
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (15 bp):
TAAAATAAATAATAA
Found at i:18320190 original size:23 final size:23
Alignment explanation
Indices: 18320164--18320215 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 23
18320154 TAATTTTTAA
18320164 ATTTAGAATTATTTAGTGATAAT
1 ATTTAGAATTATTTAGTGATAAT
* *
18320187 ATTTTGAATTATTTAGTGATAGT
1 ATTTAGAATTATTTAGTGATAAT
18320210 ATTTAG
1 ATTTAG
18320216 GAAAAATCTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.35, C:0.00, G:0.15, T:0.50
Consensus pattern (23 bp):
ATTTAGAATTATTTAGTGATAAT
Found at i:18321055 original size:22 final size:19
Alignment explanation
Indices: 18321026--18321074 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
18321016 TATCCATTTA
*
18321026 TTTTATTTTCTTAAATTTATT
1 TTTTATTTTC--AAATATATT
18321047 TTTTCATTTTCAAATATA-T
1 TTTT-ATTTTCAAATATATT
18321066 TTTTATTTT
1 TTTTATTTT
18321075 ATTTTACTAC
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 5 0.19
19 5 0.19
20 6 0.23
21 4 0.15
22 6 0.23
ACGTcount: A:0.24, C:0.06, G:0.00, T:0.69
Consensus pattern (19 bp):
TTTTATTTTCAAATATATT
Found at i:18327862 original size:27 final size:27
Alignment explanation
Indices: 18327832--18328009 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
18327822 ATATTGAGTC
* * * *
18327832 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
18327859 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
18327886 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
18327914 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
18327941 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
18327968 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
18327995 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
18328010 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:18327971 original size:82 final size:81
Alignment explanation
Indices: 18327853--18328008 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
18327843 TGCTATATAA
* *
18327853 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
18327918 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
18327935 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
18327999 CACTTAGTGC
65 CACTTAGTGC
18328009 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:18343031 original size:22 final size:23
Alignment explanation
Indices: 18343003--18343053 Score: 95
Period size: 22 Copynumber: 2.3 Consensus size: 23
18342993 TAATTTTTAA
18343003 ATTTAGAATTATTTAGTGA-AAT
1 ATTTAGAATTATTTAGTGATAAT
18343025 ATTTAGAATTATTTAGTGATAAT
1 ATTTAGAATTATTTAGTGATAAT
18343048 ATTTAG
1 ATTTAG
18343054 GAAAAATCTA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 19 0.68
23 9 0.32
ACGTcount: A:0.39, C:0.00, G:0.14, T:0.47
Consensus pattern (23 bp):
ATTTAGAATTATTTAGTGATAAT
Found at i:18344059 original size:20 final size:18
Alignment explanation
Indices: 18344024--18344077 Score: 54
Period size: 20 Copynumber: 2.8 Consensus size: 18
18344014 TTATTTATCC
18344024 ATTTATTTTATTTTTTTAA
1 ATTTATTTT-TTTTTTTAA
*
18344043 ATTTATTTTTTCATTTTTGA
1 ATTTATTTTTT--TTTTTAA
*
18344063 ATCTATTTTTATTTT
1 ATTTATTTTT-TTTT
18344078 ATTTATTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
18 2 0.07
19 12 0.40
20 15 0.50
21 1 0.03
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.72
Consensus pattern (18 bp):
ATTTATTTTTTTTTTTAA
Found at i:18345988 original size:6 final size:6
Alignment explanation
Indices: 18345977--18346193 Score: 207
Period size: 6 Copynumber: 35.8 Consensus size: 6
18345967 AACCAAAATG
*
18345977 AGAATC AGAATC AGAATC AGTAAT- AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
*
18346025 AG-GTGAC AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC
1 AGAAT--C AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC
* * * *
18346074 AGTATT AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC
* *
18346123 AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC AGTATT AGTAA-C
1 AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC
*
18346171 AAAATC AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC AGAAT
18346194 GTGAATGCAA
Statistics
Matches: 175, Mismatches: 18, Indels: 36
0.76 0.08 0.16
Matches are distributed among these distances:
5 14 0.08
6 146 0.83
7 13 0.07
8 2 0.01
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:18346099 original size:85 final size:85
Alignment explanation
Indices: 18345977--18346193 Score: 382
Period size: 85 Copynumber: 2.6 Consensus size: 85
18345967 AACCAAAATG
* * *
18345977 AGAATCAGAATCAGAATCAGTAATAGAATCAGAATCAGAATCA-ATATTAGGTGACAGAATCAGA
1 AGAATCAGAATCAGTATTAGTAACAGAATCAGAATCAGAATCAGA-ATTAGGTGACAGAATCAGA
18346041 ATCAGAATCAGTAACAGAATC
65 ATCAGAATCAGTAACAGAATC
18346062 AGAATCAGAATCAGTATTAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGACAGAATCAGAA
1 AGAATCAGAATCAGTATTAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGACAGAATCAGAA
18346127 TCAGAATCAGTAACAGAATC
66 TCAGAATCAGTAACAGAATC
*
18346147 AGAATCAGAATCAGTATTAGTAACAAAATCAGAATCAGAATCAGAAT
1 AGAATCAGAATCAGTATTAGTAACAGAATCAGAATCAGAATCAGAAT
18346194 GTGAATGCAA
Statistics
Matches: 127, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
85 126 0.99
86 1 0.01
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (85 bp):
AGAATCAGAATCAGTATTAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGACAGAATCAGAA
TCAGAATCAGTAACAGAATC
Done.