Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 62 of 284
Found at i:21714715 original size:20 final size:20
Alignment explanation
Indices: 21714652--21714718 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
21714642 TTTTGAATAC
21714652 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
21714672 AACATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
21714692 ATCATGTGCATGTCATATCA-
1 ATCATGTGCATATCATA-CAT
21714712 ATCATGT
1 ATCATGT
21714719 ATATCAAAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.34, C:0.19, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:21722489 original size:31 final size:30
Alignment explanation
Indices: 21722446--21722528 Score: 141
Period size: 31 Copynumber: 2.7 Consensus size: 30
21722436 CCAATCTCAA
21722446 CATA-TACTGGCCGAAGCCTTTTCATATTT
1 CATATTACTGGCCGAAGCCTTTTCATATTT
21722475 CATATTACTAGGCCGAAGCCTTTTCATATTT
1 CATATTACT-GGCCGAAGCCTTTTCATATTT
21722506 CATATTACTGGGCCGAAGCCTTT
1 CATATTACT-GGCCGAAGCCTTT
21722529 ACTGTAAACG
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
29 4 0.08
30 4 0.08
31 43 0.84
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (30 bp):
CATATTACTGGCCGAAGCCTTTTCATATTT
Found at i:21722888 original size:20 final size:20
Alignment explanation
Indices: 21722825--21722891 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
21722815 TTATGAATAC
21722825 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
21722845 AACATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
21722865 ATCATGTGCATGTCATATCA-
1 ATCATGTGCATATCATA-CAT
21722885 ATCATGT
1 ATCATGT
21722892 ATATCAAAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.34, C:0.19, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:21725795 original size:13 final size:14
Alignment explanation
Indices: 21725770--21725798 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
21725760 GACGAGGCTC
21725770 CTTTGCTTCCTTTG
1 CTTTGCTTCCTTTG
21725784 CTTTGC-TCCTTTG
1 CTTTGCTTCCTTTG
21725797 CT
1 CT
21725799 GATGGCTCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.00, C:0.31, G:0.14, T:0.55
Consensus pattern (14 bp):
CTTTGCTTCCTTTG
Found at i:21727736 original size:27 final size:27
Alignment explanation
Indices: 21727642--21727728 Score: 104
Period size: 27 Copynumber: 3.2 Consensus size: 27
21727632 TTAGTTTATC
** *
21727642 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACCCAAATACCCTCGATTTGTA
* *
21727669 AAATTA-CCAAAGTACCCCCGATTTATA
1 AAATTACCCAAA-TACCCTCGATTTGTA
*
21727696 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACCCAAATACCCTCGATTTGTA
21727723 AAATTA
1 AAATTA
21727729 TTGAAATAAG
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
26 3 0.06
27 42 0.84
28 5 0.10
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (27 bp):
AAATTACCCAAATACCCTCGATTTGTA
Found at i:21727781 original size:27 final size:27
Alignment explanation
Indices: 21727741--21727937 Score: 277
Period size: 27 Copynumber: 7.3 Consensus size: 27
21727731 GAAATAAGAT
* *
21727741 AGAATTACCATTTTACTCTCGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
*
21727768 AGAATTACCGTTTTACCCTCGATTTAT
1 AGAATTACCGTTTTACCCTCGATTTAC
*
21727795 AGAATTACTGTTTTACCCTCGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
* *
21727822 AGAATTACCGTTTTACCCTCAATTTAT
1 AGAATTACCGTTTTACCCTCGATTTAC
*
21727849 AGAATTACCGTCTTACCCTCGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
* * *
21727876 AGAATTACCATTTTACCCTTGATTTAT
1 AGAATTACCGTTTTACCCTCGATTTAC
* *
21727903 AAAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
*
21727930 AAAATTAC
1 AGAATTAC
21727938 TAAAATACCT
Statistics
Matches: 152, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 152 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (27 bp):
AGAATTACCGTTTTACCCTCGATTTAC
Found at i:21727821 original size:54 final size:54
Alignment explanation
Indices: 21727739--21727937 Score: 308
Period size: 54 Copynumber: 3.7 Consensus size: 54
21727729 TTGAAATAAG
*
21727739 ATAGAATTACCATTTTACTCTCGATTTACAGAATTACCGTTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTT
** *
21727793 ATAGAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAATTT
1 ATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTT
* * * *
21727847 ATAGAATTACCGTCTTACCCTCGATTTACAGAATTACCATTTTACCCTTGATTT
1 ATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTT
* *
21727901 ATAAAATTACCATTTTACCCTCGATTTACAAAATTAC
1 ATAGAATTACCATTTTACCCTCGATTTACAGAATTAC
21727938 TAAAATACCT
Statistics
Matches: 132, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 132 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (54 bp):
ATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTT
Found at i:21727946 original size:27 final size:27
Alignment explanation
Indices: 21727808--21728056 Score: 142
Period size: 27 Copynumber: 9.2 Consensus size: 27
21727798 ATTACTGTTT
* ****
21727808 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCAAAA
* * * ****
21727835 TACCCTCAATTTATAGAATTACCGTCT
1 TACCCTCGATTTACAAAATTACCAAAA
* ***
21727862 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCAAAA
* * ***
21727889 TACCCTTGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCAAAA
*
21727916 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* * *
21727943 TACCTTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
** * *
21727970 TACCCTCGATCAATAAAATTACCATAA
1 TACCCTCGATTTACAAAATTACCAAAA
* **
21727997 TACCC-CTGGTTTGTAAAATTACCAAAA
1 TACCCTC-GATTTACAAAATTACCAAAA
*** *
21728024 TACTCCT-GATTTGTGAAATTACCGAAA
1 TAC-CCTCGATTTACAAAATTACCAAAA
21728051 TACCCT
1 TACCCT
21728057 TGTAGGGTAG
Statistics
Matches: 184, Mismatches: 35, Indels: 7
0.81 0.15 0.03
Matches are distributed among these distances:
26 4 0.02
27 178 0.97
28 2 0.01
ACGTcount: A:0.35, C:0.23, G:0.08, T:0.34
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCAAAA
Found at i:21727961 original size:54 final size:54
Alignment explanation
Indices: 21727743--21728020 Score: 214
Period size: 54 Copynumber: 5.1 Consensus size: 54
21727733 AATAAGATAG
* * * * ** * * *
21727743 AATTACCATTTTACTCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAG
1 AATTACCATATTACCCTCGATTTACAAAATTACCATAATACCCTTGGTTTATAA
** * * * ** *** *
21727797 AATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAATTTATAG
1 AATTACCATATTACCCTCGATTTACAAAATTACCATAATACCCTTGGTTTATAA
* * * ** *
21727851 AATTACCGTCTTACCCTCGATTTACAGAATTACCATTTTACCCTTGATTTATAA
1 AATTACCATATTACCCTCGATTTACAAAATTACCATAATACCCTTGGTTTATAA
* * * * *
21727905 AATTACCATTTTACCCTCGATTTACAAAATTACTAAAATACCTTTGGTTTACAA
1 AATTACCATATTACCCTCGATTTACAAAATTACCATAATACCCTTGGTTTATAA
* * ** * * *
21727959 AATTACCAAAATACCCTCGATCAATAAAATTACCATAATACCCCTGGTTTGTAA
1 AATTACCATATTACCCTCGATTTACAAAATTACCATAATACCCTTGGTTTATAA
21728013 AATTACCA
1 AATTACCA
21728021 AAATACTCCT
Statistics
Matches: 192, Mismatches: 32, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 192 1.00
ACGTcount: A:0.33, C:0.23, G:0.08, T:0.37
Consensus pattern (54 bp):
AATTACCATATTACCCTCGATTTACAAAATTACCATAATACCCTTGGTTTATAA
Found at i:21728070 original size:27 final size:27
Alignment explanation
Indices: 21728040--21728396 Score: 389
Period size: 27 Copynumber: 13.3 Consensus size: 27
21728030 TGATTTGTGA
21728040 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
21728067 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
21728094 AATTATCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
21728121 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
21728148 AATTACCGGAATA-CCTCTGTAGGGTAA
1 AATTACCGAAATACCCT-TGTAGGGTAG
* * *
21728175 AATTACTGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
21728202 AATTACCGGAATACCCCTGTAGGGTA-
1 AATTACCGAAATACCCTTGTAGGGTAG
*
21728228 ATATTACTGAAATACCCTTGTAGGGTAG
1 A-ATTACCGAAATACCCTTGTAGGGTAG
* **
21728256 AAATATTGAAATA-CCTCTGTA-GGTAG
1 AATTACCGAAATACCCT-TGTAGGGTAG
* * * *
21728282 AATTACTGAAATACCCCTGTATGATAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
21728309 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
21728336 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * * * *
21728363 AATTACTGATATACCCTTATGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
21728390 AATTACC
1 AATTACC
21728397 TTTTCTGCCC
Statistics
Matches: 280, Mismatches: 43, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
26 27 0.10
27 250 0.89
28 3 0.01
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:21728895 original size:32 final size:31
Alignment explanation
Indices: 21728859--21728921 Score: 81
Period size: 32 Copynumber: 2.0 Consensus size: 31
21728849 GTACCAGTTA
*
21728859 TATTACCGTCACTGATGGCTATGTGCCGAAGT
1 TATTACAGTCACTGATGGCTATGTGCC-AAGT
* * *
21728891 TATTACAGTTATTGATGGCTTTGTGCCAAGT
1 TATTACAGTCACTGATGGCTATGTGCCAAGT
21728922 ATTCTGTTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
31 4 0.15
32 23 0.85
ACGTcount: A:0.22, C:0.17, G:0.24, T:0.37
Consensus pattern (31 bp):
TATTACAGTCACTGATGGCTATGTGCCAAGT
Found at i:21728962 original size:27 final size:26
Alignment explanation
Indices: 21728932--21729032 Score: 112
Period size: 27 Copynumber: 3.8 Consensus size: 26
21728922 ATTCTGTTAA
* *
21728932 GTGGCTTTGCCACATTATCTTATTCTG
1 GTGGCTATGCCACAATATC-TATTCTG
*
21728959 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTATGCCAC-AATATCTATTCTG
*
21728986 GTGGCTCTGCCACAATATCTATATCTG
1 GTGGCTATGCCACAATATCTAT-TCTG
* * *
21729013 GTGACTCTGTCACAATATCT
1 GTGGCTATGCCACAATATCT
21729033 GATAACTGAG
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.12
27 52 0.80
28 5 0.08
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.37
Consensus pattern (26 bp):
GTGGCTATGCCACAATATCTATTCTG
Found at i:21728990 original size:54 final size:53
Alignment explanation
Indices: 21728932--21729033 Score: 134
Period size: 54 Copynumber: 1.9 Consensus size: 53
21728922 ATTCTGTTAA
* * *
21728932 GTGGCTTTGCCACATTATCT-TATTCTGGTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCACAATATCTATA-TCTGGTGACTATGCCAC-AATATCTGTTCTG
* *
21728986 GTGGCTCTGCCACAATATCTATATCTGGTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTATATCTGGTGACTATGCCACAATATCTG
21729034 ATAACTGAGC
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
53 8 0.19
54 32 0.76
55 2 0.05
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.36
Consensus pattern (53 bp):
GTGGCTCTGCCACAATATCTATATCTGGTGACTATGCCACAATATCTGTTCTG
Found at i:21729208 original size:6 final size:6
Alignment explanation
Indices: 21729193--21729284 Score: 64
Period size: 6 Copynumber: 14.8 Consensus size: 6
21729183 ATTCTGTTAC
* * *
21729193 CTGATA CTGATT CTGATT TTGATT CTG-TT ACCTGATA CTGATTT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGA-TT CTGATT
* *
21729243 CTG-TCAC CTAATT CTGATT CTGATT CTGATT CT-AGTT CTGAT
1 CTGAT--T CTGATT CTGATT CTGATT CTGATT CTGA-TT CTGAT
21729285 AATGTTTCTT
Statistics
Matches: 68, Mismatches: 9, Indels: 18
0.72 0.09 0.19
Matches are distributed among these distances:
5 4 0.06
6 51 0.75
7 11 0.16
8 2 0.03
ACGTcount: A:0.20, C:0.18, G:0.15, T:0.47
Consensus pattern (6 bp):
CTGATT
Found at i:21729212 original size:32 final size:32
Alignment explanation
Indices: 21729170--21729242 Score: 112
Period size: 31 Copynumber: 2.3 Consensus size: 32
21729160 TTGCATTCAC
* *
21729170 ATTCTAATTTTTTATTCTGTTACCTGATACTG
1 ATTCTGATTTTTGATTCTGTTACCTGATACTG
21729202 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTTGATTCTGTTACCTGATACTG
21729233 ATTTCTGATT
1 A-TTCTGATT
21729243 CTGTCACCTA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
31 24 0.65
32 12 0.32
33 1 0.03
ACGTcount: A:0.21, C:0.15, G:0.12, T:0.52
Consensus pattern (32 bp):
ATTCTGATTTTTGATTCTGTTACCTGATACTG
Found at i:21729233 original size:25 final size:25
Alignment explanation
Indices: 21729199--21729270 Score: 99
Period size: 26 Copynumber: 2.8 Consensus size: 25
21729189 TTACCTGATA
*
21729199 CTGATTCTGATTTTGATTCTGTTAC
1 CTGATTCTGATTTTGATTCTGTCAC
*
21729224 CTGATACTGATTTCTGATTCTGTCAC
1 CTGATTCTGATTT-TGATTCTGTCAC
* *
21729250 CTAATTCTGATTCTGATTCTG
1 CTGATTCTGATTTTGATTCTG
21729271 ATTCTAGTTC
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
25 20 0.49
26 21 0.51
ACGTcount: A:0.18, C:0.19, G:0.15, T:0.47
Consensus pattern (25 bp):
CTGATTCTGATTTTGATTCTGTCAC
Found at i:21729273 original size:31 final size:31
Alignment explanation
Indices: 21729183--21729300 Score: 115
Period size: 31 Copynumber: 4.0 Consensus size: 31
21729173 CTAATTTTTT
*
21729183 ATTCTGTTACCTGATACTGATTCTGATTTTG
1 ATTCTGTTACCTGATACTGATTCTGATTCTG
21729214 ATTCTGTTACCTGATACTGA---T--TTCTG
1 ATTCTGTTACCTGATACTGATTCTGATTCTG
* * *
21729240 ATTCTGTCACCTAATTCTGATTCTGATTCTG
1 ATTCTGTTACCTGATACTGATTCTGATTCTG
* * *
21729271 ATTCTAGTT--CTGATAATGTTTCTTATTCTG
1 ATTCT-GTTACCTGATACTGATTCTGATTCTG
21729301 TAATGGGTTA
Statistics
Matches: 71, Mismatches: 10, Indels: 13
0.76 0.11 0.14
Matches are distributed among these distances:
26 21 0.30
28 1 0.01
29 1 0.01
30 16 0.23
31 30 0.42
32 2 0.03
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.48
Consensus pattern (31 bp):
ATTCTGTTACCTGATACTGATTCTGATTCTG
Found at i:21731554 original size:24 final size:23
Alignment explanation
Indices: 21731525--21731570 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
21731515 TTAGCGAACA
21731525 AAATATATAAATATATAAATAAAC
1 AAATATATAAATATA-AAATAAAC
* *
21731549 AAATATTTATATATAAAATAAA
1 AAATATATAAATATAAAATAAA
21731571 ATATAAATTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (23 bp):
AAATATATAAATATAAAATAAAC
Found at i:21732059 original size:20 final size:20
Alignment explanation
Indices: 21732016--21732064 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
21732006 GGGGGCTAGT
*
21732016 AAATCAATTTGATTAAAATA
1 AAATCAAATTGATTAAAATA
* *
21732036 AAATCAAATTGATTAGAATC
1 AAATCAAATTGATTAAAATA
*
21732056 AAATAAAAT
1 AAATCAAAT
21732065 CAGGATATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.31
Consensus pattern (20 bp):
AAATCAAATTGATTAAAATA
Found at i:21735880 original size:16 final size:17
Alignment explanation
Indices: 21735859--21735906 Score: 55
Period size: 16 Copynumber: 2.8 Consensus size: 17
21735849 AACAAAATAT
21735859 ATAAATATATAAATAAA
1 ATAAATATATAAATAAA
*
21735876 A-AAATATTTATATATAAA
1 ATAAATA--TATAAATAAA
21735894 ATAAA-ATATAAAT
1 ATAAATATATAAAT
21735907 TGAATAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
16 11 0.42
17 1 0.04
18 11 0.42
19 3 0.12
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (17 bp):
ATAAATATATAAATAAA
Found at i:21735882 original size:22 final size:20
Alignment explanation
Indices: 21735852--21735906 Score: 56
Period size: 22 Copynumber: 2.6 Consensus size: 20
21735842 GTTAGTGAAC
*
21735852 AAAATATATAAATATATAAATA
1 AAAAAATATAAATATAT-AA-A
**
21735874 AAAAAATATTTATATATAAA
1 AAAAAATATAAATATATAAA
*
21735894 ATAAAATATAAAT
1 AAAAAATATAAAT
21735907 TGAATAATTT
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
20 11 0.41
21 2 0.07
22 14 0.52
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (20 bp):
AAAAAATATAAATATATAAA
Found at i:21735889 original size:20 final size:20
Alignment explanation
Indices: 21735863--21735902 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
21735853 AAATATATAA
21735863 ATATATAAATAAAAAAATATTT
1 ATATAT-AA-AAAAAAATATTT
*
21735885 ATATATAAAATAAAATAT
1 ATATATAAAAAAAAATAT
21735903 AAATTGAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 2 0.12
22 6 0.35
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (20 bp):
ATATATAAAAAAAAATATTT
Found at i:21736389 original size:20 final size:20
Alignment explanation
Indices: 21736346--21736394 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
21736336 AGGGGCTATT
*
21736346 AAATCAATTTGATTAAAATA
1 AAATCAAATTGATTAAAATA
* *
21736366 AAATCAAATTGATTAGAATC
1 AAATCAAATTGATTAAAATA
*
21736386 AAATAAAAT
1 AAATCAAAT
21736395 CAGGATATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.31
Consensus pattern (20 bp):
AAATCAAATTGATTAAAATA
Found at i:21739829 original size:20 final size:19
Alignment explanation
Indices: 21739804--21739846 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
21739794 GAGCTTTTCT
21739804 TTTTTA-ATATATTATAAATA
1 TTTTTATAT-TATTA-AAATA
*
21739824 TTTTTATATTATTAAATTA
1 TTTTTATATTATTAAAATA
21739843 TTTT
1 TTTT
21739847 ATTATCATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 8 0.38
20 11 0.52
21 2 0.10
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (19 bp):
TTTTTATATTATTAAAATA
Found at i:21739832 original size:19 final size:20
Alignment explanation
Indices: 21739804--21739846 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
21739794 GAGCTTTTCT
21739804 TTTTTAATA-TATTATAAATA
1 TTTTTAATATTATTA-AAATA
*
21739824 TTTTT-ATATTATTAAATTA
1 TTTTTAATATTATTAAAATA
21739843 TTTT
1 TTTT
21739847 ATTATCATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 11 0.52
20 10 0.48
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (20 bp):
TTTTTAATATTATTAAAATA
Found at i:21739833 original size:17 final size:19
Alignment explanation
Indices: 21739811--21739846 Score: 58
Period size: 17 Copynumber: 2.0 Consensus size: 19
21739801 TCTTTTTTAA
21739811 TATATTA-TAAA-TATTTT
1 TATATTATTAAATTATTTT
21739828 TATATTATTAAATTATTTT
1 TATATTATTAAATTATTTT
21739847 ATTATCATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.41
18 4 0.24
19 6 0.35
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (19 bp):
TATATTATTAAATTATTTT
Found at i:21742160 original size:2 final size:2
Alignment explanation
Indices: 21742153--21742180 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
21742143 CCTACAAAGT
21742153 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
21742181 TCTAACTACC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:21745834 original size:35 final size:35
Alignment explanation
Indices: 21745769--21745862 Score: 82
Period size: 35 Copynumber: 2.7 Consensus size: 35
21745759 CATAGGTAAG
* * ** *
21745769 TACATGTAAGCTTATATTGAACTGGT-ATATTCGGC
1 TACATGTGAGCTTACATTGAA-TTTTAATATTCGAC
* * * *
21745804 TGCATGTGAGGTTACATTGAATTTTAATATTTGAT
1 TACATGTGAGCTTACATTGAATTTTAATATTCGAC
*
21745839 TACATGTGAGCTTATATTGAATTT
1 TACATGTGAGCTTACATTGAATTT
21745863 ATATACTCGG
Statistics
Matches: 46, Mismatches: 12, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
34 2 0.04
35 44 0.96
ACGTcount: A:0.29, C:0.10, G:0.19, T:0.43
Consensus pattern (35 bp):
TACATGTGAGCTTACATTGAATTTTAATATTCGAC
Found at i:21745881 original size:35 final size:35
Alignment explanation
Indices: 21745806--21745882 Score: 84
Period size: 35 Copynumber: 2.2 Consensus size: 35
21745796 TATTCGGCTG
* * *
21745806 CATGTGAGGTTACATTGAATTTTAATATTTGATTA
1 CATGTGAGCTTACATTGAATTTTAATACTCGATTA
* *
21745841 CATGTGAGCTTATATTGAA-TTTATATACTCGGTTA
1 CATGTGAGCTTACATTGAATTTTA-ATACTCGATTA
*
21745876 TATGTGA
1 CATGTGA
21745883 AATTATCTTG
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
34 4 0.11
35 31 0.89
ACGTcount: A:0.30, C:0.08, G:0.18, T:0.44
Consensus pattern (35 bp):
CATGTGAGCTTACATTGAATTTTAATACTCGATTA
Found at i:21752555 original size:181 final size:181
Alignment explanation
Indices: 21752251--21752615 Score: 721
Period size: 181 Copynumber: 2.0 Consensus size: 181
21752241 ATGTGAGCAT
21752251 TGATTTATAATCAAATATGAGAACATAAGTGTTTAATGACCACCTCTGGATGTACCAACATCTAG
1 TGATTTATAATCAAATATGAGAACATAAGTGTTTAATGACCACCTCTGGATGTACCAACATCTAG
21752316 AGTAAGAATCCTGCATAAAAGATATGAAGTAAGTGGTATCTGCAAGTATACGAGTTAGGTTGTAA
66 AGTAAGAATCCTGCATAAAAGATATGAAGTAAGTGGTATCTGCAAGTATACGAGTTAGGTTGTAA
21752381 CATAGTTACAATGAAGTAGGTGAGTACTCTAAGGATCATACCCAAGGGAGG
131 CATAGTTACAATGAAGTAGGTGAGTACTCTAAGGATCATACCCAAGGGAGG
21752432 TGATTTATAATCAAATATGAGAACATAAGTGTTTAATGACCACCTCTGGATGTACCAACATCTAG
1 TGATTTATAATCAAATATGAGAACATAAGTGTTTAATGACCACCTCTGGATGTACCAACATCTAG
21752497 AGTAAGAATCCTGCATAAAAGATATGAAGTAAGTGGTATCTGCAAGTATACGAGTTAGGTTGTAA
66 AGTAAGAATCCTGCATAAAAGATATGAAGTAAGTGGTATCTGCAAGTATACGAGTTAGGTTGTAA
*
21752562 CATAGTTACAATGAAGTAGGTGAGTACTCTAAGGATTATACCCAAGGGAGG
131 CATAGTTACAATGAAGTAGGTGAGTACTCTAAGGATCATACCCAAGGGAGG
21752613 TGA
1 TGA
21752616 GTACTAAATT
Statistics
Matches: 183, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
181 183 1.00
ACGTcount: A:0.37, C:0.13, G:0.22, T:0.27
Consensus pattern (181 bp):
TGATTTATAATCAAATATGAGAACATAAGTGTTTAATGACCACCTCTGGATGTACCAACATCTAG
AGTAAGAATCCTGCATAAAAGATATGAAGTAAGTGGTATCTGCAAGTATACGAGTTAGGTTGTAA
CATAGTTACAATGAAGTAGGTGAGTACTCTAAGGATCATACCCAAGGGAGG
Found at i:21758131 original size:42 final size:42
Alignment explanation
Indices: 21758072--21758155 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
21758062 CTTCAAAAAG
*
21758072 AACAATTAAAATGTGGATGTATTTCCAAATAGCATATATGTT
1 AACAATTAAAATGTGGATGTATTTCCAAATACCATATATGTT
*
21758114 AACAATTAAAATGTGGATGTATTTCCAAATCCCATATATGTT
1 AACAATTAAAATGTGGATGTATTTCCAAATACCATATATGTT
21758156 CCCCAAAACT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.36
Consensus pattern (42 bp):
AACAATTAAAATGTGGATGTATTTCCAAATACCATATATGTT
Found at i:21761021 original size:60 final size:60
Alignment explanation
Indices: 21760954--21761070 Score: 198
Period size: 60 Copynumber: 1.9 Consensus size: 60
21760944 TACCTCTTAA
*
21760954 GCCGAGCGATTGCTTTCTCTCCTTCCTACCATGGGGGGATATTTAGCTAACACTCTTTAG
1 GCCGAGCGATTGCTTTCTCTCCTTCCTACCATGGGGGGATATTTAGCAAACACTCTTTAG
* * *
21761014 GCCGAGCGATTGCTTTCTCTCTTTTCTACCATGGGGTGATATTTAGCAAACACTCTT
1 GCCGAGCGATTGCTTTCTCTCCTTCCTACCATGGGGGGATATTTAGCAAACACTCTT
21761071 GCTATGTTTC
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
60 53 1.00
ACGTcount: A:0.19, C:0.26, G:0.21, T:0.35
Consensus pattern (60 bp):
GCCGAGCGATTGCTTTCTCTCCTTCCTACCATGGGGGGATATTTAGCAAACACTCTTTAG
Found at i:21762700 original size:24 final size:26
Alignment explanation
Indices: 21762648--21762700 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
21762638 ACGCTCACGC
* *
21762648 AACACGTTTTAAAAGCTTCCGTAACA
1 AACACGATTTAAAAGCTTCAGTAACA
*
21762674 AACACGATTTAAAAG-TT-AGTAATA
1 AACACGATTTAAAAGCTTCAGTAACA
21762698 AAC
1 AAC
21762701 TAGTTTAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 8 0.33
25 2 0.08
26 14 0.58
ACGTcount: A:0.45, C:0.17, G:0.11, T:0.26
Consensus pattern (26 bp):
AACACGATTTAAAAGCTTCAGTAACA
Found at i:21778104 original size:30 final size:30
Alignment explanation
Indices: 21778064--21778156 Score: 125
Period size: 30 Copynumber: 3.1 Consensus size: 30
21778054 ACATAAGCCC
*
21778064 AAATACCTCAAACCCGTTACAACAAACCCA
1 AAATAGCTCAAACCCGTTACAACAAACCCA
21778094 AAATAGCTCAAACCCGTTACAACAAACCCA
1 AAATAGCTCAAACCCGTTACAACAAACCCA
* * *
21778124 AAATAGC-CTAGACCCGTTATACACACACCCA
1 AAATAGCTC-AAACCCGTTACA-ACAAACCCA
21778155 AA
1 AA
21778157 CAGACCGGTT
Statistics
Matches: 57, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
29 1 0.02
30 46 0.81
31 10 0.18
ACGTcount: A:0.45, C:0.34, G:0.06, T:0.14
Consensus pattern (30 bp):
AAATAGCTCAAACCCGTTACAACAAACCCA
Found at i:21779524 original size:21 final size:20
Alignment explanation
Indices: 21779500--21779618 Score: 61
Period size: 21 Copynumber: 6.0 Consensus size: 20
21779490 ATATTTCAAC
* *
21779500 TTATATATCTTATATATTTAT
1 TTATATATATTATACA-TTAT
*
21779521 TTATTTATATTATACATTAT
1 TTATATATATTATACATTAT
* * * *
21779541 TT-TAAAAACT-TACATTTT
1 TTATATATATTATACATTAT
*
21779559 TATATTATATATTATAAATTAT
1 T-TA-TATATATTATACATTAT
*
21779581 TTCAT-T-TATTAT-TATT-T
1 TT-ATATATATTATACATTAT
*
21779598 TTATATACTATTATATATTAT
1 TTATATA-TATTATACATTAT
21779619 CTATTTTAAA
Statistics
Matches: 74, Mismatches: 14, Indels: 20
0.69 0.13 0.19
Matches are distributed among these distances:
16 2 0.03
17 4 0.05
18 11 0.15
19 17 0.23
20 11 0.15
21 21 0.28
22 8 0.11
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (20 bp):
TTATATATATTATACATTAT
Found at i:21779540 original size:28 final size:28
Alignment explanation
Indices: 21779480--21779540 Score: 65
Period size: 28 Copynumber: 2.2 Consensus size: 28
21779470 GTAGATTATT
21779480 ATTATATATTATATTTCAACTTATATATC
1 ATTATATATTATATTT-AACTTATATATC
*
21779509 -TTATATATT-TATTT-ATTTATATTATAC
1 ATTATATATTATATTTAACTTATA-TAT-C
21779536 ATTAT
1 ATTAT
21779541 TTTAAAAACT
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
25 6 0.21
26 3 0.11
27 6 0.21
28 13 0.46
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (28 bp):
ATTATATATTATATTTAACTTATATATC
Found at i:21785299 original size:26 final size:26
Alignment explanation
Indices: 21785268--21785375 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
21785258 TGAAATTCCC
*
21785268 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
21785294 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
21785320 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
21785346 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
21785372 ATCA
1 ATCA
21785376 ATTTGTATCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:21792838 original size:8 final size:8
Alignment explanation
Indices: 21792825--21792887 Score: 72
Period size: 8 Copynumber: 7.4 Consensus size: 8
21792815 AAGTAAATGA
*
21792825 TATTATGT
1 TATTATAT
21792833 TATTATAT
1 TATTATAT
*
21792841 TATTACAT
1 TATTATAT
21792849 TATTATATT
1 TATTATA-T
21792858 ATATTATATT
1 -TATTATA-T
21792868 ATATTATAT
1 -TATTATAT
21792877 TATTATAT
1 TATTATAT
21792885 TAT
1 TAT
21792888 ATAACATAAA
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
8 31 0.62
9 2 0.04
10 17 0.34
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.60
Consensus pattern (8 bp):
TATTATAT
Found at i:21792841 original size:5 final size:5
Alignment explanation
Indices: 21792833--21792889 Score: 63
Period size: 5 Copynumber: 12.6 Consensus size: 5
21792823 GATATTATGT
*
21792833 TATTA TA-T- TATTA CATTA T--TA TATTA TATTA TATTA TATTA TA-T-
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
21792877 TATTA TATTA TAT
1 TATTA TATTA TAT
21792890 AACATAAAAT
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
3 7 0.16
4 4 0.09
5 33 0.75
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.60
Consensus pattern (5 bp):
TATTA
Found at i:21792869 original size:15 final size:14
Alignment explanation
Indices: 21792832--21792889 Score: 73
Period size: 15 Copynumber: 4.0 Consensus size: 14
21792822 TGATATTATG
*
21792832 TTATTATATTATTACA
1 TTATTATATTA-TA-T
21792848 TTATTATATTATAT
1 TTATTATATTATAT
21792862 TATATTATATTATA-
1 T-TATTATATTATAT
21792876 TTATTATATTATAT
1 TTATTATATTATAT
21792890 AACATAAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
13 12 0.31
14 2 0.05
15 14 0.36
16 11 0.28
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (14 bp):
TTATTATATTATAT
Found at i:21792889 original size:13 final size:13
Alignment explanation
Indices: 21792824--21792889 Score: 78
Period size: 13 Copynumber: 4.7 Consensus size: 13
21792814 TAAGTAAATG
*
21792824 ATATTATGTTATT
1 ATATTATATTATT
21792837 ATATTATTACATTATT
1 ATATTA-T--ATTATT
21792853 ATATTATATTATATT
1 ATATTATA-T-TATT
21792868 ATATTATATTATT
1 ATATTATATTATT
21792881 ATATTATAT
1 ATATTATAT
21792890 AACATAAAAT
Statistics
Matches: 47, Mismatches: 1, Indels: 10
0.81 0.02 0.17
Matches are distributed among these distances:
13 20 0.43
14 3 0.06
15 13 0.28
16 11 0.23
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (13 bp):
ATATTATATTATT
Found at i:21795926 original size:14 final size:14
Alignment explanation
Indices: 21795876--21795933 Score: 55
Period size: 14 Copynumber: 3.9 Consensus size: 14
21795866 TTTTTATTTA
21795876 ATATGTATA-ATATAT
1 ATATGTATATA-AT-T
*
21795891 ATATGTTATAATAATA
1 ATATG-TAT-ATAATT
*
21795907 AAATGTATATAATT
1 ATATGTATATAATT
21795921 ATATGTATATAAT
1 ATATGTATATAAT
21795934 ATAAGTTATG
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
14 17 0.47
15 8 0.22
16 7 0.19
17 3 0.08
18 1 0.03
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (14 bp):
ATATGTATATAATT
Found at i:21796579 original size:43 final size:43
Alignment explanation
Indices: 21796518--21796601 Score: 111
Period size: 43 Copynumber: 2.0 Consensus size: 43
21796508 TGTGATTCCG
*
21796518 ATATGTGTTTACGAGTAAGACC-CTGTCTGGGACAG-TGGCATCA
1 ATATGTGGTTACGAGTAAGACCAC-GTCTGGGAC-GTTGGCATCA
21796561 ATATGTGGTTAC-ATGTAAGACCACGTCTGGGACGTTGGCAT
1 ATATGTGGTTACGA-GTAAGACCACGTCTGGGACGTTGGCAT
21796602 TGTACGATTT
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
42 2 0.05
43 34 0.92
44 1 0.03
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.29
Consensus pattern (43 bp):
ATATGTGGTTACGAGTAAGACCACGTCTGGGACGTTGGCATCA
Found at i:21800279 original size:23 final size:23
Alignment explanation
Indices: 21800253--21800300 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
21800243 TGCAGTATAA
21800253 ATTCTATTTTTTGAGAAAAGCGT
1 ATTCTATTTTTTGAGAAAAGCGT
21800276 ATTCTATTTTTTGAGAAAAGCGT
1 ATTCTATTTTTTGAGAAAAGCGT
21800299 AT
1 AT
21800301 AGTTTTTAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.31, C:0.08, G:0.17, T:0.44
Consensus pattern (23 bp):
ATTCTATTTTTTGAGAAAAGCGT
Found at i:21800882 original size:31 final size:28
Alignment explanation
Indices: 21800833--21800904 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 28
21800823 TAAATATTAA
*
21800833 AATTATATATA-AATTTTAATTTAATATGT
1 AATTATATATATAACTTTAATTTAATA--T
*
21800862 AATTATATATATCAACTTTAATTTAGTAT
1 AATTATATATAT-AACTTTAATTTAATAT
21800891 AATTATATATATAA
1 AATTATATATATAA
21800905 AACACTAATT
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
28 2 0.05
29 24 0.62
31 13 0.33
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (28 bp):
AATTATATATATAACTTTAATTTAATAT
Found at i:21801095 original size:16 final size:16
Alignment explanation
Indices: 21801074--21801125 Score: 54
Period size: 16 Copynumber: 3.4 Consensus size: 16
21801064 ATAATTTATA
21801074 AAAATTAAATTAAATT
1 AAAATTAAATTAAATT
* *
21801090 AAAATTATA-TATA-T
1 AAAATTAAATTAAATT
* *
21801104 AAAATTACATAAAATT
1 AAAATTAAATTAAATT
21801120 AAAATT
1 AAAATT
21801126 TATATATAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
14 9 0.31
15 5 0.17
16 15 0.52
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.37
Consensus pattern (16 bp):
AAAATTAAATTAAATT
Found at i:21801097 original size:25 final size:24
Alignment explanation
Indices: 21801069--21801120 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 24
21801059 TGTTAATAAT
*
21801069 TTATAAAAATTAAATTAAATTAAAA
1 TTATAAAAATAAAATTAAA-TAAAA
* * *
21801094 TTATATATATAAAATTACATAAAA
1 TTATAAAAATAAAATTAAATAAAA
21801118 TTA
1 TTA
21801121 AAATTTATAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
24 8 0.35
25 15 0.65
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (24 bp):
TTATAAAAATAAAATTAAATAAAA
Found at i:21801110 original size:30 final size:29
Alignment explanation
Indices: 21801070--21801149 Score: 108
Period size: 30 Copynumber: 2.7 Consensus size: 29
21801060 GTTAATAATT
21801070 TATA-AAAATTAAATTAAATTAAAATTATA
1 TATATAAAATTAAATTAAATTAAAATT-TA
* *
21801099 TATATAAAATTACATAAAATTAAAATTTA
1 TATATAAAATTAAATTAAATTAAAATTTA
*
21801128 TATATAAAGTTAAATTATAATT
1 TATATAAAATTAAATTA-AATT
21801150 CGTATATAAT
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
29 20 0.45
30 24 0.55
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.40
Consensus pattern (29 bp):
TATATAAAATTAAATTAAATTAAAATTTA
Found at i:21801635 original size:2 final size:2
Alignment explanation
Indices: 21801628--21801663 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
21801618 AATTAGTCAG
21801628 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
21801664 ATGATCTTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:21811663 original size:20 final size:20
Alignment explanation
Indices: 21811640--21811678 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
21811630 AACTATTTAA
**
21811640 ATAATATTATTTGAATAATT
1 ATAATATTAAATGAATAATT
21811660 ATAATATTAAATGAATAAT
1 ATAATATTAAATGAATAAT
21811679 CATGTGTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:21816079 original size:43 final size:43
Alignment explanation
Indices: 21816032--21816134 Score: 120
Period size: 42 Copynumber: 2.4 Consensus size: 43
21816022 ACTCGATTGA
* * **
21816032 GATTTACGTATAAGACCATCTCTGGGACATTGGCATC-ATATCT
1 GATTTACATGTAAGACCATCTCTGGGACAAAGGCATCGATAT-T
* *
21816075 GATTT-CATGTAAGACCCTTTCTGGGACAAAGGCATCGATATT
1 GATTTACATGTAAGACCATCTCTGGGACAAAGGCATCGATATT
*
21816117 GAATTACATGTAAGACCA
1 GATTTACATGTAAGACCA
21816135 CGTCCGGGAC
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
42 30 0.60
43 20 0.40
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.30
Consensus pattern (43 bp):
GATTTACATGTAAGACCATCTCTGGGACAAAGGCATCGATATT
Found at i:21816144 original size:43 final size:42
Alignment explanation
Indices: 21816063--21816144 Score: 96
Period size: 43 Copynumber: 1.9 Consensus size: 42
21816053 CTGGGACATT
* * *
21816063 GGCATCATATCTGATTTCATGTAAGACCCTTTCTGGGACAAA
1 GGCATCATATCTGATTACATGTAAGACCCTGTCCGGGACAAA
21816105 GGCATCGATAT-TGAATTACATGTAAGACCAC-GTCCGGGAC
1 GGCATC-ATATCTG-ATTACATGTAAGACC-CTGTCCGGGAC
21816145 GTCAGCATTG
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
42 8 0.24
43 25 0.74
44 1 0.03
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (42 bp):
GGCATCATATCTGATTACATGTAAGACCCTGTCCGGGACAAA
Found at i:21823420 original size:42 final size:43
Alignment explanation
Indices: 21823372--21823464 Score: 109
Period size: 42 Copynumber: 2.2 Consensus size: 43
21823362 GATTTACGTA
** *
21823372 TAAGACCATGTATGGGACATTGGCATCG-TATCT-AATTTCATG
1 TAAGACCATGTATGGGACAGAGGCATCGATAT-TGAATTACATG
* * *
21823414 TAAGACCCTTTCTGGGACAGAGGCATCGATATTGAATTACATG
1 TAAGACCATGTATGGGACAGAGGCATCGATATTGAATTACATG
21823457 TAAGACCA
1 TAAGACCA
21823465 CGTCCGGGAC
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
42 24 0.57
43 18 0.43
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (43 bp):
TAAGACCATGTATGGGACAGAGGCATCGATATTGAATTACATG
Found at i:21823474 original size:43 final size:42
Alignment explanation
Indices: 21823393--21823474 Score: 96
Period size: 43 Copynumber: 1.9 Consensus size: 42
21823383 ATGGGACATT
* * *
21823393 GGCATCGTATCTAATTTCATGTAAGACCCTTTCTGGGACAGA
1 GGCATCGTATCTAATTACATGTAAGACCCTGTCCGGGACAGA
21823435 GGCATCGATAT-TGAATTACATGTAAGACCAC-GTCCGGGAC
1 GGCATCG-TATCT-AATTACATGTAAGACC-CTGTCCGGGAC
21823475 GTCGGCATTG
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
42 8 0.24
43 25 0.74
44 1 0.03
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (42 bp):
GGCATCGTATCTAATTACATGTAAGACCCTGTCCGGGACAGA
Found at i:21827823 original size:22 final size:23
Alignment explanation
Indices: 21827795--21827837 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
21827785 ACACAAGCAT
*
21827795 AAATGACCA-CATTCCATAACCC
1 AAATGACAATCATTCCATAACCC
*
21827817 AAATGACAATCATTCTATAAC
1 AAATGACAATCATTCCATAAC
21827838 ATTTCATATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (23 bp):
AAATGACAATCATTCCATAACCC
Found at i:21829364 original size:46 final size:47
Alignment explanation
Indices: 21829258--21829378 Score: 145
Period size: 46 Copynumber: 2.5 Consensus size: 47
21829248 TGTCTTCGAC
** * *
21829258 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
* *
21829308 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
*
21829354 ATGGACTTACATGGCTCATTTCTGT
1 ATGGACTTACATGGCTCATTCCTGT
21829379 TCTATCCTGT
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 33 0.52
50 30 0.48
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:21831287 original size:45 final size:45
Alignment explanation
Indices: 21831197--21831311 Score: 117
Period size: 45 Copynumber: 2.5 Consensus size: 45
21831187 CTTGAGCTGA
* *
21831197 TGAACAGTAAGCTC-TATTGAGCTGAAATAGTAAACTCTATCGAGC
1 TGAACAGTAAGCTCATA-TGAGCTGAAACAGTAAACTCAATCGAGC
* **
21831242 TGAACAGTAAGCTCATATGAGCTGAAACGGTAAGTTCCAAT-GAGC
1 TGAACAGTAAGCTCATATGAGCTGAAACAGTAAACT-CAATCGAGC
* *
21831287 TGAAAACAGTAAGATCATATAAGCT
1 TG--AACAGTAAGCTCATATGAGCT
21831312 AAAATATCGG
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
45 35 0.59
46 5 0.08
47 19 0.32
ACGTcount: A:0.38, C:0.17, G:0.21, T:0.24
Consensus pattern (45 bp):
TGAACAGTAAGCTCATATGAGCTGAAACAGTAAACTCAATCGAGC
Found at i:21831298 original size:24 final size:23
Alignment explanation
Indices: 21831175--21831338 Score: 111
Period size: 23 Copynumber: 6.9 Consensus size: 23
21831165 GAGCCATGAT
* *
21831175 CAGTAAGCTCCTCTTGAGCTGATGAA
1 CAGTAAGCTCAT-ATGAGCTGA--AA
21831201 CAGTAAGCTC-TATTGAGCTGAAA
1 CAGTAAGCTCATA-TGAGCTGAAA
* *
21831224 TAGTAAACTC-TATCGAGCTG-AA
1 CAGTAAGCTCATAT-GAGCTGAAA
21831246 CAGTAAGCTCATATGAGCTGAAA
1 CAGTAAGCTCATATGAGCTGAAA
* *
21831269 CGGTAAGTTCCA-ATGAGCTGAAAA
1 CAGTAAGCT-CATATGAGCTG-AAA
* * *
21831293 CAGTAAGATCATATAAGCTAAAATA
1 CAGTAAGCTCATATGAGCT-GAA-A
* *
21831318 TCGGTAAGCTCATACGAGCTG
1 -CAGTAAGCTCATATGAGCTG
21831339 TAGTGAGTCT
Statistics
Matches: 112, Mismatches: 16, Indels: 21
0.75 0.11 0.14
Matches are distributed among these distances:
22 17 0.15
23 40 0.36
24 20 0.18
25 10 0.09
26 25 0.22
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.24
Consensus pattern (23 bp):
CAGTAAGCTCATATGAGCTGAAA
Found at i:21834962 original size:40 final size:34
Alignment explanation
Indices: 21834886--21834951 Score: 123
Period size: 34 Copynumber: 1.9 Consensus size: 34
21834876 CCATGCAATT
*
21834886 TCGATTAACTTTAACATGTTTTCACTGAGTGAAA
1 TCGATTAACTTTAACATGTTTTCACTAAGTGAAA
21834920 TCGATTAACTTTAACATGTTTTCACTAAGTGA
1 TCGATTAACTTTAACATGTTTTCACTAAGTGA
21834952 TGGTTCAATC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.39
Consensus pattern (34 bp):
TCGATTAACTTTAACATGTTTTCACTAAGTGAAA
Found at i:21835182 original size:20 final size:20
Alignment explanation
Indices: 21835148--21835189 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
21835138 AACTATTTAA
** *
21835148 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
21835168 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
21835188 AT
1 AT
21835190 TTTTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:21835692 original size:9 final size:9
Alignment explanation
Indices: 21835671--21835709 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
21835661 TTCCTAAAAC
21835671 ATTAATT-A
1 ATTAATTAA
21835679 ATTAATTAA
1 ATTAATTAA
*
21835688 ATTAATTAC
1 ATTAATTAA
*
21835697 TTTAATTAA
1 ATTAATTAA
21835706 ATTA
1 ATTA
21835710 TTTTCTCAAC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
8 7 0.27
9 19 0.73
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (9 bp):
ATTAATTAA
Found at i:21849889 original size:28 final size:28
Alignment explanation
Indices: 21849857--21849921 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
21849847 ATTTACTAGA
*
21849857 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
21849885 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
21849913 ATACCCCTA
1 ATACCCCTA
21849922 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:21850068 original size:28 final size:29
Alignment explanation
Indices: 21850027--21850089 Score: 94
Period size: 28 Copynumber: 2.2 Consensus size: 29
21850017 AGGAAGCGTC
*
21850027 CTGGTGGCTATGCCACAAATTATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTAT
21850055 CTGGTGGC-ACTGCCACAAAATATCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGTAT
21850084 CTGGTG
1 CTGGTG
21850090 ACTCTGTCAC
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
27 1 0.03
28 24 0.75
29 7 0.22
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.32
Consensus pattern (29 bp):
CTGGTGGCTATGCCACAAAATATCTGTAT
Found at i:21850100 original size:29 final size:28
Alignment explanation
Indices: 21850037--21850100 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 28
21850027 CTGGTGGCTA
* *
21850037 TGCCACAAATTATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
21850065 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
21850094 TGTCACA
1 TGCCACA
21850101 TTTTCTGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 16 0.52
29 15 0.48
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:21850577 original size:19 final size:19
Alignment explanation
Indices: 21850553--21850591 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
21850543 TTTTAATTAT
* *
21850553 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
21850572 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
21850591 T
1 T
21850592 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:21851837 original size:34 final size:34
Alignment explanation
Indices: 21851789--21851870 Score: 110
Period size: 34 Copynumber: 2.4 Consensus size: 34
21851779 GGATAACCAG
* *** *
21851789 CCAGCACACTAAATGCTCGTATGAGCCAATCTAT
1 CCAGCACACCAAATGCTCGTATGAAAAAATCCAT
21851823 CCAGCACACCAAATGCTCGTATGAAAAAATCCAT
1 CCAGCACACCAAATGCTCGTATGAAAAAATCCAT
*
21851857 CCATCACACCAAAT
1 CCAGCACACCAAAT
21851871 AACAATGTAA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 42 1.00
ACGTcount: A:0.38, C:0.32, G:0.11, T:0.20
Consensus pattern (34 bp):
CCAGCACACCAAATGCTCGTATGAAAAAATCCAT
Found at i:21853529 original size:20 final size:21
Alignment explanation
Indices: 21853485--21853529 Score: 51
Period size: 20 Copynumber: 2.2 Consensus size: 21
21853475 CAAATTTGGC
*
21853485 TTTTATTTCATTTAAATTATA
1 TTTTATTTCACTTAAATTATA
21853506 -TTTATTT-ACTT-AATTACTA
1 TTTTATTTCACTTAAATTA-TA
21853525 TTTTA
1 TTTTA
21853530 CCCTTAATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 5
0.78 0.04 0.19
Matches are distributed among these distances:
18 5 0.24
19 5 0.24
20 11 0.52
ACGTcount: A:0.31, C:0.07, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTTATTTCACTTAAATTATA
Found at i:21864584 original size:15 final size:16
Alignment explanation
Indices: 21864555--21864584 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
21864545 CAAACATGCT
21864555 TTAACACATTATCAAA
1 TTAACACATTATCAAA
21864571 TTAACACA-TATCAA
1 TTAACACATTATCAA
21864585 CAAGGCACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAACACATTATCAAA
Found at i:21865748 original size:25 final size:25
Alignment explanation
Indices: 21865720--21865789 Score: 81
Period size: 25 Copynumber: 2.8 Consensus size: 25
21865710 CTGTACATGT
21865720 ATGCTCACATGAGCTGTGAATCAGA
1 ATGCTCACATGAGCTGTGAATCAGA
* *
21865745 ATGCTCACACT-AGCTATGAATTAGA
1 ATGCTCACA-TGAGCTGTGAATCAGA
*
21865770 ATGCT-AGCATGAACTGTGAA
1 ATGCTCA-CATGAGCTGTGAA
21865790 AATAGTCCTG
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
24 2 0.05
25 35 0.92
26 1 0.03
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (25 bp):
ATGCTCACATGAGCTGTGAATCAGA
Found at i:21871942 original size:5 final size:6
Alignment explanation
Indices: 21871929--21871982 Score: 54
Period size: 6 Copynumber: 8.3 Consensus size: 6
21871919 ATAATTTAAT
* *
21871929 AAATAA AAATAA AAATCTAA AACTAA AACTAA AAATAA AAATATA AATATAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAATA-A AA-ATAA
21871981 AA
1 AA
21871983 CATATAATTT
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
6 28 0.67
7 6 0.14
8 8 0.19
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.20
Consensus pattern (6 bp):
AAATAA
Found at i:21871961 original size:26 final size:26
Alignment explanation
Indices: 21871932--21871983 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21871922 ATTTAATAAA
*
21871932 TAAAAATAAAAATCTAAA-ACTAAAAC
1 TAAAAATAAAAATATAAATA-TAAAAC
21871958 TAAAAATAAAAATATAAATATAAAAC
1 TAAAAATAAAAATATAAATATAAAAC
21871984 ATATAATTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.71, C:0.08, G:0.00, T:0.21
Consensus pattern (26 bp):
TAAAAATAAAAATATAAATATAAAAC
Found at i:21871975 original size:20 final size:19
Alignment explanation
Indices: 21871929--21871989 Score: 61
Period size: 20 Copynumber: 3.1 Consensus size: 19
21871919 ATAATTTAAT
*
21871929 AAATAAAAATAAAAATCTA
1 AAATAAAAATAAAAATATA
*
21871948 AAACTAAAACTAAAAATA-A
1 AAA-TAAAAATAAAAATATA
21871967 AAATATAAATATAAAACATATA
1 AAATA-AAA-ATAAAA-ATATA
21871989 A
1 A
21871990 TTTTATACAA
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
18 2 0.06
19 10 0.29
20 17 0.50
21 3 0.09
22 2 0.06
ACGTcount: A:0.72, C:0.07, G:0.00, T:0.21
Consensus pattern (19 bp):
AAATAAAAATAAAAATATA
Found at i:21874271 original size:38 final size:38
Alignment explanation
Indices: 21874220--21874298 Score: 140
Period size: 38 Copynumber: 2.1 Consensus size: 38
21874210 ATTTTATACC
*
21874220 ATTAAACATCAACATTAGTACATGTCACACATGGGTAA
1 ATTAAACATCAACATCAGTACATGTCACACATGGGTAA
*
21874258 ATTAAACATCAACATCAGTGCATGTCACACATGGGTAA
1 ATTAAACATCAACATCAGTACATGTCACACATGGGTAA
21874296 ATT
1 ATT
21874299 TTTAAACATG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.41, C:0.19, G:0.14, T:0.27
Consensus pattern (38 bp):
ATTAAACATCAACATCAGTACATGTCACACATGGGTAA
Found at i:21875079 original size:17 final size:17
Alignment explanation
Indices: 21875038--21875090 Score: 79
Period size: 17 Copynumber: 3.0 Consensus size: 17
21875028 CAATGATATG
*
21875038 CAATCTTAGATATGACATG
1 CAATCTTAGATATG--ATA
21875057 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
21875074 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
21875091 TGCAATCCTA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
17 19 0.58
19 14 0.42
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.34
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:21875109 original size:17 final size:19
Alignment explanation
Indices: 21875030--21875102 Score: 114
Period size: 19 Copynumber: 3.9 Consensus size: 19
21875020 ATAATCTTCA
21875030 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
21875049 ATGACATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
21875068 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
21875085 ATGATATGCAATCCTAGA
1 ATGATATGCAATCTTAGA
21875103 AGATATGATT
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
17 17 0.35
19 32 0.65
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.33
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:21879994 original size:53 final size:52
Alignment explanation
Indices: 21879810--21880065 Score: 245
Period size: 55 Copynumber: 4.8 Consensus size: 52
21879800 CATTAGGGTT
* * *
21879810 CAAGGATACCGTGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGG
1 CAAGGATACCATGTAAGACCATGCCAAGACATGG-CATTGGTAA-G-TTCTAAGG
* * *
21879865 CAAGGAAATCATGTAAGACCAT-CTCAAGACATGGCATTGATAAGTTACTATAAGG
1 CAAGGATACCATGTAAGACCATGC-CAAGACATGGCATTGGTAAGTT-C--TAAGG
* * *
21879920 CAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGG
1 C-AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTC-TAAGG
* *
21879973 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT-TCAA--
1 CAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCT-AAGG
* * * *
21880023 -AAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 CAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
21880066 GTACCCGTGT
Statistics
Matches: 173, Mismatches: 20, Indels: 22
0.80 0.09 0.10
Matches are distributed among these distances:
49 40 0.23
51 1 0.01
52 8 0.05
53 44 0.25
54 9 0.05
55 66 0.38
56 5 0.03
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (52 bp):
CAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTAAGG
Found at i:21880017 original size:108 final size:110
Alignment explanation
Indices: 21879821--21880018 Score: 303
Period size: 108 Copynumber: 1.8 Consensus size: 110
21879811 AAGGATACCG
*
21879821 TGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGACCA
1 TGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
*
21879886 TCTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCA
66 TCTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
* * *
21879931 TGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAGACC
1 TGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAGACC
* *
21879993 ATGTCAAGACATGGCAATGGTAAGTT
65 ATCTCAAGACATGGCAATGATAAGTT
21880019 TCAAAAGGAT
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.59
109 7 0.09
110 23 0.29
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (110 bp):
TGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
TCTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
Found at i:21882012 original size:12 final size:12
Alignment explanation
Indices: 21881995--21882024 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
21881985 ACATAAATAA
21881995 TCATTCTTAAAT
1 TCATTCTTAAAT
21882007 TCATTCTTAAAT
1 TCATTCTTAAAT
21882019 TCATTC
1 TCATTC
21882025 ATTCTTAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.30, C:0.20, G:0.00, T:0.50
Consensus pattern (12 bp):
TCATTCTTAAAT
Found at i:21882216 original size:245 final size:245
Alignment explanation
Indices: 21881786--21882275 Score: 971
Period size: 245 Copynumber: 2.0 Consensus size: 245
21881776 AATCTTTAGG
21881786 AATTTTTCAGAGTAATTCTCGAAACATTCTTTTTACTCTAGAGCCTAGGAGTAATAGGATTTCAT
1 AATTTTTCAGAGTAATTCTCGAAACATTCTTTTTACTCTAGAGCCTAGGAGTAATAGGATTTCAT
21881851 TAGTGAAATGGGCTTACAATCATCTATTATTTTTTAATAAAGCATAACTTTTATCAATTTGAACG
66 TAGTGAAATGGGCTTACAATCATCTATTATTTTTTAATAAAGCATAACTTTTATCAATTTGAACG
21881916 AGTATTGTTTCATTTTTATCAACCAATATTCCGTTAAATTTTGGCAATTCTTATTCTTTCATTTA
131 AGTATTGTTTCATTTTTATCAACCAATATTCCGTTAAATTTTGGCAATTCTTATTCTTTCATTTA
21881981 TAGCACATAAATAATCATTCTTAAATTCATTCTTAAATTCATTCATTCTT
196 TAGCACATAAATAATCATTCTTAAATTCATTCTTAAATTCATTCATTCTT
21882031 AATTTTTCAGAGTAATTCTCGAAACATTCTTTTTACTCTAGAGCCTAGGAGTAATAGGATTTCAT
1 AATTTTTCAGAGTAATTCTCGAAACATTCTTTTTACTCTAGAGCCTAGGAGTAATAGGATTTCAT
*
21882096 TTGTGAAATGGGCTTACAATCATCTATTATTTTTTAATAAAGCATAACTTTTATCAATTTGAACG
66 TAGTGAAATGGGCTTACAATCATCTATTATTTTTTAATAAAGCATAACTTTTATCAATTTGAACG
21882161 AGTATTGTTTCATTTTTATCAACCAATATTCCGTTAAATTTTGGCAATTCTTATTCTTTCATTTA
131 AGTATTGTTTCATTTTTATCAACCAATATTCCGTTAAATTTTGGCAATTCTTATTCTTTCATTTA
21882226 TAGCACATAAATAATCATTCTTAAATTCATTCTTAAATTCATTCATTCTT
196 TAGCACATAAATAATCATTCTTAAATTCATTCTTAAATTCATTCATTCTT
21882276 TCTGTATTCT
Statistics
Matches: 244, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
245 244 1.00
ACGTcount: A:0.32, C:0.15, G:0.10, T:0.43
Consensus pattern (245 bp):
AATTTTTCAGAGTAATTCTCGAAACATTCTTTTTACTCTAGAGCCTAGGAGTAATAGGATTTCAT
TAGTGAAATGGGCTTACAATCATCTATTATTTTTTAATAAAGCATAACTTTTATCAATTTGAACG
AGTATTGTTTCATTTTTATCAACCAATATTCCGTTAAATTTTGGCAATTCTTATTCTTTCATTTA
TAGCACATAAATAATCATTCTTAAATTCATTCTTAAATTCATTCATTCTT
Found at i:21882257 original size:12 final size:12
Alignment explanation
Indices: 21882240--21882269 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
21882230 ACATAAATAA
21882240 TCATTCTTAAAT
1 TCATTCTTAAAT
21882252 TCATTCTTAAAT
1 TCATTCTTAAAT
21882264 TCATTC
1 TCATTC
21882270 ATTCTTTCTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.30, C:0.20, G:0.00, T:0.50
Consensus pattern (12 bp):
TCATTCTTAAAT
Found at i:21882519 original size:28 final size:28
Alignment explanation
Indices: 21882479--21882535 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
21882469 AGAAAGAGGC
21882479 AGTAGAGAATGTAGCCCTAGAGGAAGGG
1 AGTAGAGAATGTAGCCCTAGAGGAAGGG
* *
21882507 AGTAGAGAATGTAGTCCTGGAGGAAGGG
1 AGTAGAGAATGTAGCCCTAGAGGAAGGG
21882535 A
1 A
21882536 AAGAGGTGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.35, C:0.09, G:0.40, T:0.16
Consensus pattern (28 bp):
AGTAGAGAATGTAGCCCTAGAGGAAGGG
Found at i:21887174 original size:78 final size:78
Alignment explanation
Indices: 21887044--21887494 Score: 712
Period size: 78 Copynumber: 5.8 Consensus size: 78
21887034 CGAAGAAATA
** * * *
21887044 GATTTGGCATCTCCATATTCA-ACGGAGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTG
1 GATTTGGCATCTCTGTATT-AGACGGGGAGCAGATCAAAGACATAACAGAT-TGGACCTTCATTG
21887107 AAGCAGATCCAAGAT
64 AAGCAGATCCAAGAT
* * * * *
21887122 GATTTCGCATCTTTGTATTAGACGGGGAGCAGATCGAAGACATAGCAAATCT-GACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAACAGAT-TGGACCTTCATTGA
*
21887186 AGTAGATCCAAGAT
65 AGCAGATCCAAGAT
21887200 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAACAGATTGGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAACAGATTGGACCTTCATTGAA
21887265 GCAGATCCAAGAT
66 GCAGATCCAAGAT
21887278 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAACAGATTGGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAACAGATTGGACCTTCATTGAA
21887343 GCAGATCCAAGAT
66 GCAGATCCAAGAT
21887356 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAACAGATTGGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAACAGATTGGACCTTCATTGAA
21887421 GCAGATCCAAGAT
66 GCAGATCCAAGAT
** *
21887434 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGGAGACATAGCAGATCT-GACCTTCAT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAACAGAT-TGGACCTTCAT
21887495 ATGTTTACAT
Statistics
Matches: 354, Mismatches: 16, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
77 2 0.01
78 351 0.99
79 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAACAGATTGGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:21887559 original size:45 final size:44
Alignment explanation
Indices: 21887508--21887693 Score: 177
Period size: 45 Copynumber: 4.3 Consensus size: 44
21887498 TTTACATCGA
21887508 AGCAAATCCAAGATGACAGATTTGGCATCTCTGTATTAGACGGGG
1 AGCAAATCCAAGATG-CAGATTTGGCATCTCTGTATTAGACGGGG
*
21887553 AGCAAAT-C--G--G-AGATTTGGCATCTCTGTATTAGATGGGG
1 AGCAAATCCAAGATGCAGATTTGGCATCTCTGTATTAGACGGGG
* ** * * ** *
21887591 AGCAGATTGAAGAAGCAAATTTGGTGTCTCTGTATTAGACAGGG
1 AGCAAATCCAAGATGCAGATTTGGCATCTCTGTATTAGACGGGG
* ** * *
21887635 AGCAGATTGAAGATAACAGATTGGGCATCTCTGTATTAGACGGGG
1 AGCAAATCCAAGAT-GCAGATTTGGCATCTCTGTATTAGACGGGG
*
21887680 AGCAAATCAAAGAT
1 AGCAAATCCAAGAT
21887694 AGGAGATATC
Statistics
Matches: 116, Mismatches: 18, Indels: 14
0.78 0.12 0.09
Matches are distributed among these distances:
38 33 0.28
40 1 0.01
41 1 0.01
42 1 0.01
43 1 0.01
44 37 0.32
45 42 0.36
ACGTcount: A:0.32, C:0.14, G:0.28, T:0.25
Consensus pattern (44 bp):
AGCAAATCCAAGATGCAGATTTGGCATCTCTGTATTAGACGGGG
Found at i:21887694 original size:45 final size:45
Alignment explanation
Indices: 21887563--21887683 Score: 172
Period size: 44 Copynumber: 2.7 Consensus size: 45
21887553 AGCAAATCGG
* *
21887563 AGATTTGGCATCTCTGTATTAGATGGGGAGCAGATTGAAGA-AGC
1 AGATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGATAAC
* ** *
21887607 AAATTTGGTGTCTCTGTATTAGACAGGGAGCAGATTGAAGATAAC
1 AGATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGATAAC
*
21887652 AGATTGGGCATCTCTGTATTAGACGGGGAGCA
1 AGATTTGGCATCTCTGTATTAGACGGGGAGCA
21887684 AATCAAAGAT
Statistics
Matches: 65, Mismatches: 11, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
44 36 0.55
45 29 0.45
ACGTcount: A:0.30, C:0.12, G:0.31, T:0.27
Consensus pattern (45 bp):
AGATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGATAAC
Found at i:21888096 original size:35 final size:38
Alignment explanation
Indices: 21888050--21888128 Score: 123
Period size: 35 Copynumber: 2.2 Consensus size: 38
21888040 ATAATCTTCA
21888050 ATGATATGCAATCTTAGATATGAT-T-CAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
21888086 ATGAT-TGCAATCTTAGATATGATATGCAATCTTAGA-
1 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
21888122 A-GATATG
1 ATGATATG
21888129 ATTTTGTAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 21 0.52
36 9 0.22
37 10 0.25
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (38 bp):
ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:21888128 original size:17 final size:19
Alignment explanation
Indices: 21888050--21888121 Score: 123
Period size: 17 Copynumber: 3.9 Consensus size: 19
21888040 ATAATCTTCA
21888050 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
21888069 ATGAT-T-CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
21888086 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
21888104 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
21888122 AGATATGATT
Statistics
Matches: 51, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
17 17 0.33
18 17 0.33
19 17 0.33
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.38
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:21888147 original size:22 final size:22
Alignment explanation
Indices: 21888050--21888144 Score: 79
Period size: 17 Copynumber: 4.8 Consensus size: 22
21888040 ATAATCTTCA
21888050 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
21888069 ATGAT-T-CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
21888086 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
21888104 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
21888126 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
21888145 GATTTAATTT
Statistics
Matches: 68, Mismatches: 2, Indels: 8
0.87 0.03 0.10
Matches are distributed among these distances:
17 17 0.25
18 17 0.25
19 14 0.21
22 8 0.12
23 12 0.18
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.39
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:21888435 original size:18 final size:19
Alignment explanation
Indices: 21888412--21888448 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
21888402 TGTTTCCCTG
*
21888412 ATTTTTTTATAT-ATTTTA
1 ATTTTTTTAAATAATTTTA
21888430 ATTTTTTTAAATAATTTTA
1 ATTTTTTTAAATAATTTTA
21888449 GTATCATATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (19 bp):
ATTTTTTTAAATAATTTTA
Found at i:21900291 original size:18 final size:17
Alignment explanation
Indices: 21900268--21900327 Score: 57
Period size: 20 Copynumber: 3.1 Consensus size: 17
21900258 CTTAAAAATG
21900268 TTTTAAAAATAAAAAAA
1 TTTTAAAAATAAAAAAA
21900285 TTCTTAAAAAATAAATAAAAA
1 TT-TT-AAAAAT-AA-AAAAA
21900306 TATTTAAAAATATAAAATAA
1 T-TTTAAAAATA-AAAA-AA
21900326 TT
1 TT
21900328 AAAATTAATA
Statistics
Matches: 36, Mismatches: 0, Indels: 12
0.75 0.00 0.25
Matches are distributed among these distances:
17 2 0.06
18 2 0.06
19 11 0.31
20 12 0.33
21 8 0.22
22 1 0.03
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (17 bp):
TTTTAAAAATAAAAAAA
Found at i:21900306 original size:21 final size:20
Alignment explanation
Indices: 21900261--21900322 Score: 65
Period size: 19 Copynumber: 3.0 Consensus size: 20
21900251 ACATTTTCTT
* *
21900261 AAAAATGTTTTAAAAAT-AA
1 AAAAATATTTAAAAAATAAA
21900280 AAAAAT-TCTTAAAAAATAAA
1 AAAAATAT-TTAAAAAATAAA
21900300 TAAAAATATTTAAAAATATAAA
1 -AAAAATATTTAAAAA-ATAAA
21900322 A
1 A
21900323 TAATTAAAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
18 1 0.03
19 14 0.38
20 2 0.05
21 14 0.38
22 6 0.16
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.29
Consensus pattern (20 bp):
AAAAATATTTAAAAAATAAA
Found at i:21900323 original size:23 final size:24
Alignment explanation
Indices: 21900273--21900325 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 24
21900263 AAATGTTTTA
21900273 AAAATAAAAAAATTCTTAAAAAAT
1 AAAATAAAAAAATTCTTAAAAAAT
*
21900297 -AAATAAAAATA-T-TTAAAAATAT
1 AAAATAAAAAAATTCTTAAAAA-AT
21900319 AAAATAA
1 AAAATAA
21900326 TTAAAATTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 7 0.27
22 3 0.12
23 16 0.62
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (24 bp):
AAAATAAAAAAATTCTTAAAAAAT
Found at i:21900332 original size:16 final size:16
Alignment explanation
Indices: 21900297--21900331 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
21900287 CTTAAAAAAT
*
21900297 AAATAAAAATATTTAA
1 AAATAAAAATAATTAA
21900313 AAATATAAAATAATTAA
1 AAATA-AAAATAATTAA
21900330 AA
1 AA
21900332 TTAATATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
AAATAAAAATAATTAA
Found at i:21901069 original size:23 final size:23
Alignment explanation
Indices: 21901022--21901069 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
21901012 AATGGACTTA
*
21901022 TATTTGTCTTCGGTTTTAATTTT
1 TATTTGTCTTCGGTTTTAATCTT
* *
21901045 TATTTGTCTTTGGTTTTACTCTT
1 TATTTGTCTTCGGTTTTAATCTT
21901068 TA
1 TA
21901070 ATGAAAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.12, C:0.10, G:0.12, T:0.65
Consensus pattern (23 bp):
TATTTGTCTTCGGTTTTAATCTT
Found at i:21901806 original size:22 final size:22
Alignment explanation
Indices: 21901781--21901823 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 22
21901771 ATTGTTGGCA
21901781 ATTT-AGTGGATTATAGTGCGTG
1 ATTTGAGTGGATTATAG-GCGTG
* *
21901803 ATTTGTGTGGATTTTAGGCGT
1 ATTTGAGTGGATTATAGGCGT
21901824 TTTTGGATTG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.19, C:0.05, G:0.33, T:0.44
Consensus pattern (22 bp):
ATTTGAGTGGATTATAGGCGTG
Found at i:21902644 original size:19 final size:18
Alignment explanation
Indices: 21902620--21902656 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
21902610 AGGCTCCATG
21902620 GGATGTTCAAGTAGGGAA
1 GGATGTTCAAGTAGGGAA
*
21902638 NGGATGTTCATGTAGGGAA
1 -GGATGTTCAAGTAGGGAA
21902657 AGAAAGAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.30, C:0.05, G:0.38, T:0.24
Consensus pattern (18 bp):
GGATGTTCAAGTAGGGAA
Found at i:21907241 original size:28 final size:28
Alignment explanation
Indices: 21907201--21907258 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
21907191 AAAACACAAA
21907201 TATAATTAAATGACCATTTTATATAATT
1 TATAATTAAATGACCATTTTATATAATT
21907229 TATAATTAAATGACCATTTTATATAATT
1 TATAATTAAATGACCATTTTATATAATT
21907257 TA
1 TA
21907259 CCCTTACTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.43, C:0.07, G:0.03, T:0.47
Consensus pattern (28 bp):
TATAATTAAATGACCATTTTATATAATT
Found at i:21908063 original size:19 final size:19
Alignment explanation
Indices: 21908039--21908107 Score: 86
Period size: 19 Copynumber: 3.7 Consensus size: 19
21908029 TTCTATATAA
21908039 TTTATATTTTTTTACGATT
1 TTTATATTTTTTTACGATT
*** * *
21908058 TTTATAAAATTTTACAACT
1 TTTATATTTTTTTACGATT
21908077 TTT-TATTTTTTTACGATT
1 TTTATATTTTTTTACGATT
21908095 TTTATATTTTTTT
1 TTTATATTTTTTT
21908108 CTAATTTTTA
Statistics
Matches: 39, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
18 13 0.33
19 26 0.67
ACGTcount: A:0.25, C:0.06, G:0.03, T:0.67
Consensus pattern (19 bp):
TTTATATTTTTTTACGATT
Found at i:21908090 original size:18 final size:18
Alignment explanation
Indices: 21908021--21908117 Score: 72
Period size: 19 Copynumber: 5.3 Consensus size: 18
21908011 CTTCATAAAA
* *
21908021 TTTTATATTTCTATATAAT
1 TTTTATATTT-TTTACAAT
* *
21908040 TTATAT-TTTTTTACGAT
1 TTTTATATTTTTTACAAT
**
21908057 TTTTATAAAATTTTACAACT
1 TTTTAT-ATTTTTTACAA-T
*
21908077 TTTTAT-TTTTTTACGAT
1 TTTTATATTTTTTACAAT
*
21908094 TTTTATATTTTTTTCTAAT
1 TTTTATATTTTTTAC-AAT
21908113 TTTTA
1 TTTTA
21908118 ATAAATTTTT
Statistics
Matches: 60, Mismatches: 13, Indels: 10
0.72 0.16 0.12
Matches are distributed among these distances:
17 17 0.28
18 17 0.28
19 19 0.32
20 7 0.12
ACGTcount: A:0.27, C:0.06, G:0.02, T:0.65
Consensus pattern (18 bp):
TTTTATATTTTTTACAAT
Found at i:21908141 original size:56 final size:56
Alignment explanation
Indices: 21908039--21908144 Score: 128
Period size: 56 Copynumber: 1.9 Consensus size: 56
21908029 TTCTATATAA
* **
21908039 TTTATATTTTTTTACGATTTTTATAAAATTTTACAACTTTTTATTTTTTTACGATT
1 TTTATATTTTTTTACAATTTTTATAAAATTTTACAACTTTGAATTTTTTTACGATT
*
21908095 TTTATATTTTTTT-CTAATTTTTAATAAATTTTTA-ATA-TTTGAATTTTTTT
1 TTTATATTTTTTTAC-AATTTTT-ATAAAATTTTACA-ACTTTGAATTTTTTT
21908145 TAATTAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
55 1 0.02
56 31 0.72
57 11 0.26
ACGTcount: A:0.27, C:0.05, G:0.03, T:0.65
Consensus pattern (56 bp):
TTTATATTTTTTTACAATTTTTATAAAATTTTACAACTTTGAATTTTTTTACGATT
Found at i:21908204 original size:20 final size:22
Alignment explanation
Indices: 21908176--21908218 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
21908166 TATAGCTTTT
*
21908176 ATTG-ATTT-TAATTTTTTATA
1 ATTGTATTTCTAATTTTTAATA
*
21908196 ATTGTTTTTCTAATTTTTAATA
1 ATTGTATTTCTAATTTTTAATA
21908218 A
1 A
21908219 AAGCAAGGGC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 4 0.21
21 3 0.16
22 12 0.63
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.63
Consensus pattern (22 bp):
ATTGTATTTCTAATTTTTAATA
Found at i:21908400 original size:92 final size:91
Alignment explanation
Indices: 21908225--21908435 Score: 256
Period size: 91 Copynumber: 2.4 Consensus size: 91
21908215 ATAAAAGCAA
* * * *
21908225 GGGCTTAATTACTTTTTTTGAAAAAAGTTTGAGGGTCTTTTTGATGCATTTTGAAAGTTCAAGTA
1 GGGCTTAATTACTTTTTTTGAAAAAAGTTTGAGGGCCTTTTTGATACATTTTAAAAGCTCAAGTA
* **
21908290 TCCAATTGAGGGTAAAAAAAAAAGTAG
66 CCCAA-TGAAAGTAAAAAAAAAAGTAG
*
21908317 GGGCTTAATTACTTTTTTTGAAAAGA-TTTGAGGGCCTTTTTGATACATTTTAAAAGCTCAAGTA
1 GGGCTTAATTACTTTTTTTGAAAAAAGTTTGAGGGCCTTTTTGATACATTTTAAAAGCTCAAGTA
21908381 CCCAA-GAAAGTACAAAAAAAAAG-A-
66 CCCAATGAAAGTA-AAAAAAAAAGTAG
*
21908405 ---CTTAATTGTCTTTTTTTGTAAAAAAGTTTGA
1 GGGCTTAATT-ACTTTTTTTG-AAAAAAGTTTGA
21908436 AAGCTTTTTG
Statistics
Matches: 105, Mismatches: 10, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
85 7 0.07
86 9 0.09
87 5 0.05
88 5 0.05
89 6 0.06
90 10 0.10
91 38 0.36
92 25 0.24
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.36
Consensus pattern (91 bp):
GGGCTTAATTACTTTTTTTGAAAAAAGTTTGAGGGCCTTTTTGATACATTTTAAAAGCTCAAGTA
CCCAATGAAAGTAAAAAAAAAAGTAG
Found at i:21916618 original size:22 final size:24
Alignment explanation
Indices: 21916575--21916618 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
21916565 TGATAATATG
21916575 TTTTGATATAACAAATTAAAGTGT
1 TTTTGATATAACAAATTAAAGTGT
*
21916599 TTTTGA-ATAA-AAGTTAAAGT
1 TTTTGATATAACAAATTAAAGT
21916619 TGAACAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 4 0.21
24 6 0.32
ACGTcount: A:0.43, C:0.02, G:0.14, T:0.41
Consensus pattern (24 bp):
TTTTGATATAACAAATTAAAGTGT
Found at i:21919105 original size:29 final size:31
Alignment explanation
Indices: 21919064--21919128 Score: 98
Period size: 30 Copynumber: 2.2 Consensus size: 31
21919054 GCCTAATATG
* *
21919064 CAATCATATACAC-AAACTTTAATTTT-TTT
1 CAATTATATACACAAAACTTTAATTTTAATT
21919093 CAATTATATACACAAAACTTTAATTTTAATT
1 CAATTATATACACAAAACTTTAATTTTAATT
21919124 CAATT
1 CAATT
21919129 TGCCCGTACC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
29 12 0.38
30 13 0.41
31 7 0.22
ACGTcount: A:0.42, C:0.15, G:0.00, T:0.43
Consensus pattern (31 bp):
CAATTATATACACAAAACTTTAATTTTAATT
Found at i:21928185 original size:60 final size:61
Alignment explanation
Indices: 21928102--21928252 Score: 198
Period size: 64 Copynumber: 2.4 Consensus size: 61
21928092 GGGGAGACTA
* * * *
21928102 CTCAACCCA-CCAACCACTACACTCCAC-CCGTACCAGCCATACACTCCATGTGGGGAATAG
1 CTCAACCCACCCAGCC-CAACACTCCACTCCATACCAGCCATACACTCCATGTAGGGAATAG
* *
21928162 CTCAACCCACCCAGCCCAACACTCCACAGTTGCATACCAGCCATACACTCCATGTAGGGCATAG
1 CTCAACCCACCCAGCCCAACACTCCAC---TCCATACCAGCCATACACTCCATGTAGGGAATAG
21928226 CTCAACCCACCCAGCCCAACACTCCAC
1 CTCAACCCACCCAGCCCAACACTCCAC
21928253 AGTTGCAGCC
Statistics
Matches: 80, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
60 19 0.24
61 5 0.06
64 56 0.70
ACGTcount: A:0.30, C:0.44, G:0.12, T:0.14
Consensus pattern (61 bp):
CTCAACCCACCCAGCCCAACACTCCACTCCATACCAGCCATACACTCCATGTAGGGAATAG
Found at i:21928210 original size:64 final size:64
Alignment explanation
Indices: 21928132--21928259 Score: 238
Period size: 64 Copynumber: 2.0 Consensus size: 64
21928122 ACTCCACCCG
*
21928132 TACCAGCCATACACTCCATGTGGGGAATAGCTCAACCCACCCAGCCCAACACTCCACAGTTGCA
1 TACCAGCCATACACTCCATGTAGGGAATAGCTCAACCCACCCAGCCCAACACTCCACAGTTGCA
*
21928196 TACCAGCCATACACTCCATGTAGGGCATAGCTCAACCCACCCAGCCCAACACTCCACAGTTGCA
1 TACCAGCCATACACTCCATGTAGGGAATAGCTCAACCCACCCAGCCCAACACTCCACAGTTGCA
21928260 GCCTTGCTGC
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 62 1.00
ACGTcount: A:0.30, C:0.40, G:0.15, T:0.16
Consensus pattern (64 bp):
TACCAGCCATACACTCCATGTAGGGAATAGCTCAACCCACCCAGCCCAACACTCCACAGTTGCA
Found at i:21928394 original size:22 final size:21
Alignment explanation
Indices: 21928354--21928394 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
21928344 CCAGTCCCAT
21928354 GCATCAGATAAAAACAACATG
1 GCATCAGATAAAAACAACATG
21928375 GCATGCAG-TAAATAACAACA
1 GCAT-CAGATAAA-AACAACA
21928395 GTCAAACATG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.51, C:0.20, G:0.15, T:0.15
Consensus pattern (21 bp):
GCATCAGATAAAAACAACATG
Found at i:21928452 original size:26 final size:26
Alignment explanation
Indices: 21928406--21928458 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
21928396 TCAAACATGC
*
21928406 ATTTAGGTCAATTTAACCCTATGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
* *
21928432 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAAC-CCTAGGGGT
21928458 A
1 A
21928459 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.40
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAGGGGT
Found at i:21946968 original size:15 final size:14
Alignment explanation
Indices: 21946950--21946980 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
21946940 ATTTGGGAAC
21946950 ACCAAATTGTATGTT
1 ACCAAATTGTAT-TT
21946965 ACCAAATTGTATTT
1 ACCAAATTGTATTT
21946979 AC
1 AC
21946981 ATACTCTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.25
15 12 0.75
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (14 bp):
ACCAAATTGTATTT
Found at i:21950845 original size:6 final size:6
Alignment explanation
Indices: 21950834--21950861 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
21950824 GTGAATCATA
21950834 ATAATT ATAATT ATAATT ATAATT ATAA
1 ATAATT ATAATT ATAATT ATAATT ATAA
21950862 AAAGTCACTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (6 bp):
ATAATT
Found at i:21951571 original size:18 final size:18
Alignment explanation
Indices: 21951544--21951582 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
21951534 ATTGGTTTTC
* *
21951544 ATATAATTGATGTGGAGG
1 ATATAATTGAGGAGGAGG
*
21951562 ATATATTTGAGGAGGAGG
1 ATATAATTGAGGAGGAGG
21951580 ATA
1 ATA
21951583 CATGAGAGGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.36, C:0.00, G:0.33, T:0.31
Consensus pattern (18 bp):
ATATAATTGAGGAGGAGG
Found at i:21952529 original size:19 final size:18
Alignment explanation
Indices: 21952505--21952542 Score: 67
Period size: 19 Copynumber: 2.1 Consensus size: 18
21952495 TGTACAATAT
21952505 AATTAAATAATATAAATTA
1 AATTAAATAAT-TAAATTA
21952524 AATTAAATAATTAAATTA
1 AATTAAATAATTAAATTA
21952542 A
1 A
21952543 TTGTTTACCC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
AATTAAATAATTAAATTA
Found at i:21952540 original size:13 final size:14
Alignment explanation
Indices: 21952500--21952543 Score: 65
Period size: 13 Copynumber: 3.2 Consensus size: 14
21952490 CAAAATGTAC
21952500 AATATAATTAAA-T
1 AATATAATTAAATT
21952513 AATATAAATTAAATT
1 AATAT-AATTAAATT
21952528 AA-ATAATTAAATT
1 AATATAATTAAATT
21952541 AAT
1 AAT
21952544 TGTTTACCCG
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
13 16 0.57
14 9 0.32
15 3 0.11
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
AATATAATTAAATT
Found at i:21958420 original size:23 final size:22
Alignment explanation
Indices: 21958359--21958421 Score: 58
Period size: 23 Copynumber: 2.9 Consensus size: 22
21958349 AGTCCTATAT
*
21958359 TTATTTTAT--ATATATTAATA
1 TTATTTTATACATATATTAAGA
* * *
21958379 TTTTTTTATCCTTATTATTAAGA
1 TTATTTTATACATA-TATTAAGA
21958402 TTATTTTATTACATATATTA
1 TTATTTTA-TACATATATTA
21958422 TTATTCTTCG
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
20 8 0.24
22 2 0.06
23 19 0.58
24 4 0.12
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (22 bp):
TTATTTTATACATATATTAAGA
Found at i:21978012 original size:14 final size:15
Alignment explanation
Indices: 21977980--21978013 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
21977970 AAAAAAATAA
21977980 AAATTAAAAATGTCC
1 AAATTAAAAATGTCC
21977995 -AATTAAAAA-GTCC
1 AAATTAAAAATGTCC
21978008 AAATTA
1 AAATTA
21978014 CAAGGTCATA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 4 0.22
14 14 0.78
ACGTcount: A:0.56, C:0.12, G:0.06, T:0.26
Consensus pattern (15 bp):
AAATTAAAAATGTCC
Found at i:21979406 original size:20 final size:19
Alignment explanation
Indices: 21979375--21979416 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
21979365 ATACTATAAG
21979375 ATTATTTTTATCATACATT
1 ATTATTTTTATCATACATT
* *
21979394 ATTATTATTTATCGTATATT
1 ATTATT-TTTATCATACATT
21979414 ATT
1 ATT
21979417 TTTCAAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.31, C:0.07, G:0.02, T:0.60
Consensus pattern (19 bp):
ATTATTTTTATCATACATT
Found at i:21979456 original size:22 final size:20
Alignment explanation
Indices: 21979426--21979468 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 20
21979416 TTTTCAAAAA
21979426 TTATTATTATTAACATTATTT
1 TTATTATTATTAACA-TATTT
*
21979447 TTATATATTATTAATATATTT
1 TTAT-TATTATTAACATATTT
21979468 T
1 T
21979469 ACTTGTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (20 bp):
TTATTATTATTAACATATTT
Found at i:21979620 original size:23 final size:23
Alignment explanation
Indices: 21979572--21979642 Score: 76
Period size: 23 Copynumber: 3.1 Consensus size: 23
21979562 ATATATTCAA
21979572 ATTATGTTTTATTCTATA-ACGTTT
1 ATTAT-TTTTATTCTATATACG-TT
21979596 ATTATTTTTATTCTATATTAC-TT
1 ATTATTTTTATTCTATA-TACGTT
* *
21979619 ATTATTTTT-TTATATATATGTT
1 ATTATTTTTATTCTATATACGTT
21979641 AT
1 AT
21979643 GTATATATTA
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
21 2 0.05
22 10 0.24
23 23 0.55
24 5 0.12
25 2 0.05
ACGTcount: A:0.27, C:0.06, G:0.04, T:0.63
Consensus pattern (23 bp):
ATTATTTTTATTCTATATACGTT
Found at i:22000888 original size:9 final size:8
Alignment explanation
Indices: 22000872--22000896 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
22000862 AACCCACATA
22000872 TATTTTTT
1 TATTTTTT
22000880 TATTTTTT
1 TATTTTTT
22000888 TATTTTTT
1 TATTTTTT
22000896 T
1 T
22000897 CGTATTTTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (8 bp):
TATTTTTT
Found at i:22001606 original size:41 final size:40
Alignment explanation
Indices: 22001528--22001606 Score: 104
Period size: 41 Copynumber: 1.9 Consensus size: 40
22001518 AAAACTTGTT
* * *
22001528 AAGAAAAAATTTGAAGAGGATCCCCATAATTTGAAAAGNGC
1 AAGAAAAAATTTGAAGAGGATCCCCACAATCTAAAAAG-GC
* *
22001569 AAGAAAAAGTTTGAAGATGATCCCCACAATCTAAAAAG
1 AAGAAAAAATTTGAAGAGGATCCCCACAATCTAAAAAG
22001607 ATTGTTAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 33 1.00
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.19
Consensus pattern (40 bp):
AAGAAAAAATTTGAAGAGGATCCCCACAATCTAAAAAGGC
Found at i:22005352 original size:59 final size:59
Alignment explanation
Indices: 22005258--22005375 Score: 218
Period size: 59 Copynumber: 2.0 Consensus size: 59
22005248 CCAAACGAAA
22005258 ACGTACAGGGGCAAAACTTTCAGAGACACAGTGAAGTAATTACATTTTCCAGATTGGCT
1 ACGTACAGGGGCAAAACTTTCAGAGACACAGTGAAGTAATTACATTTTCCAGATTGGCT
* *
22005317 ACGTACAGGGGCGAAACTTTCAGAGACACATTGAAGTAATTACATTTTCCAGATTGGCT
1 ACGTACAGGGGCAAAACTTTCAGAGACACAGTGAAGTAATTACATTTTCCAGATTGGCT
22005376 GAAAAAAAGG
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 57 1.00
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (59 bp):
ACGTACAGGGGCAAAACTTTCAGAGACACAGTGAAGTAATTACATTTTCCAGATTGGCT
Done.