Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 66 of 284
Found at i:22954494 original size:49 final size:50
Alignment explanation
Indices: 22954412--22954529 Score: 154
Period size: 49 Copynumber: 2.4 Consensus size: 50
22954402 GTTAAGATGC
*
22954412 CGATGCCATGTCCTAGA-AATGGTCTTACACTGGCT-TCCATATAGCGAG-GT
1 CGATGCCATGTCCCAGACAA-GGTCTTACACTGGCTCT-CATATAGCG-GTGT
* *
22954462 CGATGCCATGTCCCAGACAA-GTCTTACACTGGCTCTCATCTATCGGTGT
1 CGATGCCATGTCCCAGACAAGGTCTTACACTGGCTCTCATATAGCGGTGT
22954511 CGATGCCATGTCCCAGACA
1 CGATGCCATGTCCCAGACA
22954530 TATATTGACA
Statistics
Matches: 62, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
48 1 0.02
49 42 0.68
50 17 0.27
51 2 0.03
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.26
Consensus pattern (50 bp):
CGATGCCATGTCCCAGACAAGGTCTTACACTGGCTCTCATATAGCGGTGT
Found at i:22954664 original size:46 final size:48
Alignment explanation
Indices: 22954556--22954676 Score: 147
Period size: 46 Copynumber: 2.6 Consensus size: 48
22954546 AAGCTGACGC
* * * * * *
22954556 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCGCGAGGTCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTCTACATCGCAAGGCCGATA
* * *
22954604 CATGTCACAGACATGTCTTACACTAGC-TCT-CGTCTCAAGGCCGATA
1 CATGTCCCAGACATGTCTTACACTAGCTTCTACATCGCAAGGCCGATA
22954650 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
22954677 ACACATATTA
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
46 36 0.57
47 2 0.03
48 25 0.40
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTCTACATCGCAAGGCCGATA
Found at i:22959252 original size:66 final size:66
Alignment explanation
Indices: 22959146--22959276 Score: 253
Period size: 66 Copynumber: 2.0 Consensus size: 66
22959136 TCGAAGGCTT
22959146 TTAGGGACATGGTTTGATCATGGATAAGTAGGTTGTGGGTTTAGTGATTACGGTTTGTAAATAAG
1 TTAGGGACATGGTTTGATCATGGATAAGTAGGTTGTGGGTTTAGTGATTACGGTTTGTAAATAAG
22959211 C
66 C
*
22959212 TTAGGGACATGGTTTGATCATGGATAAGTAGGTTGTGGGTTTAGTGATTATGGTTTGTAAATAAG
1 TTAGGGACATGGTTTGATCATGGATAAGTAGGTTGTGGGTTTAGTGATTACGGTTTGTAAATAAG
22959277 AACTGTGCTA
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
66 64 1.00
ACGTcount: A:0.26, C:0.05, G:0.32, T:0.37
Consensus pattern (66 bp):
TTAGGGACATGGTTTGATCATGGATAAGTAGGTTGTGGGTTTAGTGATTACGGTTTGTAAATAAG
C
Found at i:22960016 original size:70 final size:70
Alignment explanation
Indices: 22959903--22960040 Score: 267
Period size: 70 Copynumber: 2.0 Consensus size: 70
22959893 GCTGGGTGGG
*
22959903 TTGAGATATTCCCCACATGGAGTGTAGGGCTGGTACGGGTGCAGTGTAGCGGTTGGTGGGTTGAG
1 TTGAGATATTCCCCACATGGAGTGTAGGGCTGGTACGGGTGCAGTGTAGCGATTGGTGGGTTGAG
22959968 TAGGC
66 TAGGC
22959973 TTGAGATATTCCCCACATGGAGTGTAGGGCTGGTACGGGTGCAGTGTAGCGATTGGTGGGTTGAG
1 TTGAGATATTCCCCACATGGAGTGTAGGGCTGGTACGGGTGCAGTGTAGCGATTGGTGGGTTGAG
22960038 TAG
66 TAG
22960041 TCTCCCCAGA
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 67 1.00
ACGTcount: A:0.18, C:0.14, G:0.41, T:0.28
Consensus pattern (70 bp):
TTGAGATATTCCCCACATGGAGTGTAGGGCTGGTACGGGTGCAGTGTAGCGATTGGTGGGTTGAG
TAGGC
Found at i:22964708 original size:48 final size:47
Alignment explanation
Indices: 22964628--22964719 Score: 148
Period size: 48 Copynumber: 1.9 Consensus size: 47
22964618 TGCCTTCGGG
* *
22964628 ATTATTGCAACCTATGAAAATTCCGCTGTGGAAGTGGGAAAGAGAAA
1 ATTACTGCAACCTATGAAAATTCCGCTATGGAAGTGGGAAAGAGAAA
*
22964675 NATTACTGCAACCTGTGAAAATTCCGCTATGGAAGTGGGAAAGAG
1 -ATTACTGCAACCTATGAAAATTCCGCTATGGAAGTGGGAAAGAG
22964720 TAACAATGGA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 41 1.00
ACGTcount: A:0.36, C:0.14, G:0.26, T:0.23
Consensus pattern (47 bp):
ATTACTGCAACCTATGAAAATTCCGCTATGGAAGTGGGAAAGAGAAA
Found at i:22970359 original size:96 final size:96
Alignment explanation
Indices: 22970203--22970424 Score: 293
Period size: 96 Copynumber: 2.3 Consensus size: 96
22970193 ATATGTGTGT
* *** *
22970203 TAGTTTAAGACCATGTCTGGGACATGGCATCGACCACCTTATAAGAGCCAGTGTAGGACCATGTT
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGACCACAACATAAGAGCCAGTGTAAGACCATGTT
*
22970268 TGGGACATGGCATCGGCATTGATACG-AGAGC
66 TGGGACATGGCATCGGCATTGACACGTA-AGC
* * * *
22970299 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAACATGAGAGCTAGTGTAAGACCATGTT
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGACCACAACATAAGAGCCAGTGTAAGACCATGTT
* * *
22970364 TGGGACATGGCATTGGCCTTGACATGTAAGC
66 TGGGACATGGCATCGGCATTGACACGTAAGC
* *
22970395 CAGTGTAAGACCATGTCTAGGACATGGCAT
1 TAGTGTAAGACCATGTCTGGGACATGGCAT
22970425 TGACAATTTC
Statistics
Matches: 110, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
96 109 0.99
97 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.24
Consensus pattern (96 bp):
TAGTGTAAGACCATGTCTGGGACATGGCATCGACCACAACATAAGAGCCAGTGTAAGACCATGTT
TGGGACATGGCATCGGCATTGACACGTAAGC
Found at i:22970426 original size:48 final size:48
Alignment explanation
Indices: 22970208--22970424 Score: 247
Period size: 48 Copynumber: 4.5 Consensus size: 48
22970198 TGTGTTAGTT
* ***** *
22970208 TAAGACCATGTCTGGGACATGGCATCGACCACCTTATAAGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCCTTGACATGAGAGCCAGTG
* * * * * *
22970256 TAGGACCATGTTTGGGACATGGCATCGGCATTGATACGAGAGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCCTTGACATGAGAGCCAGTG
** *
22970304 TAAGACCATGTCTGGGACATGGCATCGGCCTCAACATGAGAGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCCTTGACATGAGAGCCAGTG
* *
22970352 TAAGACCATGTTTGGGACATGGCATTGGCCTTGACATGTA-AGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCCTTGACATG-AGAGCCAGTG
*
22970400 TAAGACCATGTCTAGGACATGGCAT
1 TAAGACCATGTCTGGGACATGGCAT
22970425 TGACAATTTC
Statistics
Matches: 143, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
48 142 0.99
49 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.24
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATCGGCCTTGACATGAGAGCCAGTG
Found at i:22978600 original size:46 final size:46
Alignment explanation
Indices: 22978545--22978672 Score: 184
Period size: 46 Copynumber: 2.8 Consensus size: 46
22978535 ATTTGGGCAT
* * *
22978545 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
*
22978591 CTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
* * * *
22978637 CCGAGCTTGTTGAGTTGAGTCTGAGTTAACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
22978673 GAGGGTTACA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
Found at i:22990914 original size:34 final size:33
Alignment explanation
Indices: 22990850--22990915 Score: 80
Period size: 33 Copynumber: 2.0 Consensus size: 33
22990840 TTAAAGATGT
* *
22990850 TGTTCTACATGCATGGAACGGCAATTAATGAGA
1 TGTTCCACATGCATGGAACGACAATTAATGAGA
*
22990883 TGTTCCACATGCAATGG-ACGACATTTAAATGAG
1 TGTTCCACATGC-ATGGAACGACAATT-AATGAG
22990916 GGAGAGTGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
33 18 0.64
34 10 0.36
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (33 bp):
TGTTCCACATGCATGGAACGACAATTAATGAGA
Found at i:22992862 original size:23 final size:22
Alignment explanation
Indices: 22992810--22992862 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
22992800 TCCACGTCTT
*
22992810 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
22992832 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
22992855 TTTCTTTT
1 TTTCTTTT
22992863 TCACTCTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:23001101 original size:29 final size:28
Alignment explanation
Indices: 23001065--23001137 Score: 96
Period size: 29 Copynumber: 2.5 Consensus size: 28
23001055 TCATGAGATT
23001065 GGCACTAAGTGTGC-AGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGA-GTTTAAA--GTACA
23001095 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGAGTTTAAAGTACA
23001122 TGGCACTAAGTGTGCG
1 -GGCACTAAGTGTGCG
23001138 TGGTTGATTA
Statistics
Matches: 40, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
27 5 0.12
29 34 0.85
30 1 0.03
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (28 bp):
GGCACTAAGTGTGCGAGTTTAAAGTACA
Found at i:23001360 original size:174 final size:174
Alignment explanation
Indices: 23001095--23001421 Score: 609
Period size: 174 Copynumber: 1.9 Consensus size: 174
23001085 AAATTGTACA
*
23001095 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
23001160 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
23001225 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
23001269 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTTTTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
23001334 TGTGCGAACTCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
23001399 TTTTGGACAGCGGAAAAGGTAAG
131 TTTTGGACAGCGGAAAAGGTAAG
23001422 CACCTTGAGT
Statistics
Matches: 148, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:23004355 original size:27 final size:27
Alignment explanation
Indices: 23004325--23004523 Score: 229
Period size: 27 Copynumber: 7.3 Consensus size: 27
23004315 TACTAAAATG
*
23004325 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * * *
23004352 CCCTCAATTTATAGAATTATCGTTTCA
1 CCCTCGATTTATAGAATTACCATTTTA
* * *
23004379 CCCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
*
23004406 CCATCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
23004433 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
** * *
23004460 CCCTTAATTTACAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * *
23004487 CCCTC-AGTTTAGAAAAATTACCGTTTTA
1 CCCTCGA-TTTA-TAGAATTACCATTTTA
23004515 CCCTCGATT
1 CCCTCGATT
23004524 GTGAAATTAC
Statistics
Matches: 147, Mismatches: 22, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
26 1 0.01
27 124 0.84
28 21 0.14
29 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCATTTTA
Found at i:23004443 original size:81 final size:81
Alignment explanation
Indices: 23004328--23004523 Score: 259
Period size: 81 Copynumber: 2.4 Consensus size: 81
23004318 TAAAATGCCC
* * * * *
23004328 TCGATTTGTAGAATTACCATTTTACCCTCAATTTATAGAATTATCGTTTCACCCTCGATTTACAA
1 TCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTCACCCTCAATTTACAA
*
23004393 AATTACCGTTTTACCA
66 AATTACCATTTTACCA
* *
23004409 TCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTTAATTTACAA
1 TCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTCACCCTCAATTTACAA
*
23004474 AATTACCATTTTACCC
66 AATTACCATTTTACCA
* * *
23004490 TC-AGTTTAGAAAAATTACCGTTTTACCCTCGATT
1 TCGA-TTTA-TAGAATTACCATTTTACCCTCGATT
23004524 GTGAAATTAC
Statistics
Matches: 101, Mismatches: 12, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
80 1 0.01
81 78 0.77
82 22 0.22
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.40
Consensus pattern (81 bp):
TCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTCACCCTCAATTTACAA
AATTACCATTTTACCA
Found at i:23004658 original size:27 final size:27
Alignment explanation
Indices: 23004555--23004756 Score: 122
Period size: 27 Copynumber: 7.4 Consensus size: 27
23004545 TGTAGGATAG
*
23004555 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCTTGA-TTTGTAA
* * ** * *
23004582 AATTATCGAAATACTATTGGTTTGTGA
1 AATTACCAAAATACCCTTGATTTGTAA
* *
23004609 AATTACCGAAATACCCTTAATTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
**
23004636 AATTACCAAAATACCCTTGATTTACAA
1 AATTACCAAAATACCCTTGATTTGTAA
* *
23004663 AATTA-TAGAAATACCCTTGACTTTCTAAA
1 AATTACCA-AAATACCCTTGA-TTTGT-AA
* * * * **
23004692 AATTA-TAGAAGTACCATTGGTTTACAA
1 AATTACCA-AAATACCCTTGATTTGTAA
** * *
23004719 AATTACTGAAATACCCTTGGTTTGTAG
1 AATTACCAAAATACCCTTGATTTGTAA
*
23004746 ATTTACCAAAA
1 AATTACCAAAA
23004757 CACCGTTGTA
Statistics
Matches: 136, Mismatches: 34, Indels: 10
0.76 0.19 0.06
Matches are distributed among these distances:
26 1 0.01
27 109 0.80
28 7 0.05
29 19 0.14
ACGTcount: A:0.40, C:0.16, G:0.10, T:0.34
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGATTTGTAA
Found at i:23004666 original size:54 final size:54
Alignment explanation
Indices: 23004555--23004756 Score: 181
Period size: 54 Copynumber: 3.7 Consensus size: 54
23004545 TGTAGGATAG
* * * * * ***
23004555 AATTACCAAAATACCCCTAGTTTGTAAAATTATCGAAATACTATTGGTTTGTGA
1 AATTACCGAAATACCCTTAGTTTGTAAAATTACCAAAATACCATTGGTTTACAA
* * *
23004609 AATTACCGAAATACCCTTAATTTGTAAAATTACCAAAATACCCTTGATTTACAA
1 AATTACCGAAATACCCTTAGTTTGTAAAATTACCAAAATACCATTGGTTTACAA
** * * * *
23004663 AATTATAGAAATACCCTTGACTTTCTAAAAATTA-TAGAAGTACCATTGGTTTACAA
1 AATTACCGAAATACCCTT-AGTTTGT-AAAATTACCA-AAATACCATTGGTTTACAA
* * * *
23004719 AATTACTGAAATACCCTTGGTTTGTAGATTTACCAAAA
1 AATTACCGAAATACCCTTAGTTTGTAAAATTACCAAAA
23004757 CACCGTTGTA
Statistics
Matches: 116, Mismatches: 28, Indels: 8
0.76 0.18 0.05
Matches are distributed among these distances:
54 66 0.57
55 11 0.09
56 39 0.34
ACGTcount: A:0.40, C:0.16, G:0.10, T:0.34
Consensus pattern (54 bp):
AATTACCGAAATACCCTTAGTTTGTAAAATTACCAAAATACCATTGGTTTACAA
Found at i:23005626 original size:16 final size:16
Alignment explanation
Indices: 23005605--23005635 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
23005595 CAAATATGGG
*
23005605 CATGACATTTTGCATA
1 CATGACATATTGCATA
23005621 CATGACATATTGCAT
1 CATGACATATTGCAT
23005636 GGGATATGGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.35
Consensus pattern (16 bp):
CATGACATATTGCATA
Found at i:23005706 original size:25 final size:24
Alignment explanation
Indices: 23005668--23005737 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 24
23005658 AGGAAGTGGT
*
23005668 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
*
23005692 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
23005717 AGAAAGGGCTTTGCCCCAGTT
1 A-AAAGGGCTTTGCCCCAGTT
23005738 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
24 1 0.02
25 41 0.98
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:23005750 original size:24 final size:24
Alignment explanation
Indices: 23005667--23005750 Score: 98
Period size: 25 Copynumber: 3.4 Consensus size: 24
23005657 GAGGAAGTGG
* *
23005667 TAAAAGGGCTCTGCCCCAGTTTACC
1 TAAAAGGGCTTTGCCCCAGTTTA-T
*
23005692 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTTTGCCCCAGTTTAT
*
23005716 CAGAAAGGGCTTTGCCCCAG-TTAT
1 TA-AAAGGGCTTTGCCCCAGTTTAT
23005740 TAAAAGAGGCT
1 TAAAAG-GGCT
23005751 AGGCCTCCAG
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
23 4 0.08
24 10 0.19
25 38 0.73
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCCAGTTTAT
Found at i:23017009 original size:71 final size:67
Alignment explanation
Indices: 23016932--23017073 Score: 167
Period size: 67 Copynumber: 2.1 Consensus size: 67
23016922 TCACCAGATA
* * * *
23016932 CAGATATTATGGCTAGGCCACCAGAACAGATATATATATGTGGCGAAGCCACCAGATTGCAGCGA
1 CAGATATTATGACGAAGCCACCAGAACAG----ATATATGTGGCGAAGCCACCAGATTGCAACGA
*
23016997 GGTTGC
62 GGCTGC
* * * *
23017003 CAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGCAACGATGCT
1 CAGATATTATGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAACGAGGCT
23017068 GC
66 GC
23017070 CAGA
1 CAGA
23017074 ATGCTTCCTC
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
67 38 0.61
71 24 0.39
ACGTcount: A:0.32, C:0.22, G:0.27, T:0.20
Consensus pattern (67 bp):
CAGATATTATGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAACGAGGCT
GC
Found at i:23017051 original size:27 final size:26
Alignment explanation
Indices: 23017003--23017054 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
23016993 GCGAGGTTGC
*
23017003 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
23017029 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
23017055 TTGCAACGAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:23017325 original size:8 final size:8
Alignment explanation
Indices: 23017308--23017339 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
23017298 TACCAAAGTG
*
23017308 GGCCCGTT
1 GGCCCATT
23017316 GGCCCATT
1 GGCCCATT
23017324 GGCCCATT
1 GGCCCATT
23017332 GGCCCATT
1 GGCCCATT
23017340 TTCGGCCCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.09, C:0.38, G:0.28, T:0.25
Consensus pattern (8 bp):
GGCCCATT
Found at i:23023930 original size:63 final size:62
Alignment explanation
Indices: 23023830--23023956 Score: 218
Period size: 63 Copynumber: 2.0 Consensus size: 62
23023820 TTGCCGAATT
*
23023830 GAACTAAGAAAGGGTGTTCGATACACACCTGATTCGTGACGACCGCTACTGAGATCTCTTCC
1 GAACTAAGAAAGGGTGTTCGATACACACCTGATTCGTGACGACCGCTACTGAGATCCCTTCC
* *
23023892 GNAACTAAGAAAGGGTGTTCGGTACACACCTGATTCGTGACGACTGCTACTGAGATCCCTTCC
1 G-AACTAAGAAAGGGTGTTCGATACACACCTGATTCGTGACGACCGCTACTGAGATCCCTTCC
23023955 GA
1 GA
23023957 TGTCCTACAA
Statistics
Matches: 61, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
62 2 0.03
63 59 0.97
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.24
Consensus pattern (62 bp):
GAACTAAGAAAGGGTGTTCGATACACACCTGATTCGTGACGACCGCTACTGAGATCCCTTCC
Found at i:23031967 original size:65 final size:65
Alignment explanation
Indices: 23031863--23031995 Score: 230
Period size: 65 Copynumber: 2.0 Consensus size: 65
23031853 ACTGAGATCT
* *
23031863 CTTCCAATGTCCTACAATTGATTAGCACAGTTCTTATTTACAAACCATAATCACTAAACCCCAAA
1 CTTCCAATGTCCTACAATGGATTAGCACAGTTCTTATTTACAAACCATAATCACTAAACCCAAAA
* *
23031928 CTTCCGATGTCCTACAATGGATTAGCACAGTTCTTATTTACAAACCGTAATCACTAAACCCAAAA
1 CTTCCAATGTCCTACAATGGATTAGCACAGTTCTTATTTACAAACCATAATCACTAAACCCAAAA
23031993 CTT
1 CTT
23031996 GCTCAACCAA
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.35, C:0.27, G:0.08, T:0.29
Consensus pattern (65 bp):
CTTCCAATGTCCTACAATGGATTAGCACAGTTCTTATTTACAAACCATAATCACTAAACCCAAAA
Found at i:23039914 original size:90 final size:90
Alignment explanation
Indices: 23039761--23039940 Score: 333
Period size: 90 Copynumber: 2.0 Consensus size: 90
23039751 AAAAGAAAAG
*
23039761 ATTGTGGACTAAATTGCAAAATCTTTATATTTTGGTACCAAGGTAAGTTCATGCGTAAATAATGT
1 ATTGTGGACTAAATTGCAAAATATTTATATTTTGGTACCAAGGTAAGTTCATGCGTAAATAATGT
*
23039826 AGCATAATTGTTATTTTTAAGTTAT
66 AGCATAATTATTATTTTTAAGTTAT
*
23039851 ATTGTGGACTAAATTGCAAAATATTTATATTTTGGTACCAAGGTAAGTTCATGTGTAAATAATGT
1 ATTGTGGACTAAATTGCAAAATATTTATATTTTGGTACCAAGGTAAGTTCATGCGTAAATAATGT
23039916 AGCATAATTATTATTTTTAAGTTAT
66 AGCATAATTATTATTTTTAAGTTAT
23039941 TGATGTTAAT
Statistics
Matches: 87, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
90 87 1.00
ACGTcount: A:0.34, C:0.08, G:0.16, T:0.42
Consensus pattern (90 bp):
ATTGTGGACTAAATTGCAAAATATTTATATTTTGGTACCAAGGTAAGTTCATGCGTAAATAATGT
AGCATAATTATTATTTTTAAGTTAT
Found at i:23040218 original size:46 final size:46
Alignment explanation
Indices: 23040168--23040340 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
23040158 TGGTTGAGCA
23040168 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
23040214 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
23040259 CATCCGAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
23040307 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
23040341 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 59 0.56
47 28 0.27
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:23040324 original size:93 final size:93
Alignment explanation
Indices: 23040165--23040335 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
23040155 GGATGGTTGA
* * * *
23040165 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
23040230 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
23040258 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
23040323 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
23040336 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:23046335 original size:43 final size:42
Alignment explanation
Indices: 23046271--23046424 Score: 256
Period size: 43 Copynumber: 3.6 Consensus size: 42
23046261 CCGGTATTAC
23046271 GCCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCA-CGGCACGAA
*
23046314 GCTTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCA-CGGCACGAA
23046357 GCCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCAC-GGCACGAA
*
23046400 GCCTGCT-GTCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
23046425 TAATACTAGC
Statistics
Matches: 106, Mismatches: 4, Indels: 3
0.94 0.04 0.03
Matches are distributed among these distances:
42 18 0.17
43 88 0.83
ACGTcount: A:0.29, C:0.32, G:0.26, T:0.12
Consensus pattern (42 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACGGCACGAA
Found at i:23046466 original size:38 final size:38
Alignment explanation
Indices: 23046417--23046520 Score: 127
Period size: 38 Copynumber: 2.7 Consensus size: 38
23046407 GTCACGAAGG
* * * * * *
23046417 CCCGAATATAATACTAGCACTAGGCCTGGAGGATTTAT
1 CCCGGATATAATACCAGCACGAAGCCTGCAGGATTTAA
*
23046455 CCCTGATATAATACCAGCACGAAGCCTGCAGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCAGGATTTAA
**
23046493 CCCGGATATTTTACCAGCACGAAGCCTG
1 CCCGGATATAATACCAGCACGAAGCCTG
23046521 TGGGTCTTTA
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 56 1.00
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCAGGATTTAA
Found at i:23049909 original size:17 final size:17
Alignment explanation
Indices: 23049887--23049920 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
23049877 TTTAATGCAC
23049887 ACATATTCTTCAAGAGG
1 ACATATTCTTCAAGAGG
23049904 ACATATTCTTCAAGAGG
1 ACATATTCTTCAAGAGG
23049921 CTCGATCACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (17 bp):
ACATATTCTTCAAGAGG
Found at i:23052283 original size:29 final size:29
Alignment explanation
Indices: 23052250--23052323 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
23052240 GTTGTGAGAT
* *
23052250 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCG-ACTTGAAAGTACA
* *
23052279 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGACTTGAAAGTACA
23052308 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
23052324 TGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 6 0.15
29 34 0.85
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGACTTGAAAGTACA
Found at i:23056168 original size:27 final size:27
Alignment explanation
Indices: 23056138--23056315 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
23056128 ATATTGAGCC
* * * *
23056138 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
23056165 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
23056192 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
23056220 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
23056247 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
23056274 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
23056301 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
23056316 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:23056277 original size:82 final size:81
Alignment explanation
Indices: 23056159--23056314 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
23056149 TGCTATATAA
* *
23056159 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
23056224 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
23056241 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
23056305 CACTTAGTGC
65 CACTTAGTGC
23056315 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:23064314 original size:151 final size:153
Alignment explanation
Indices: 23064097--23064406 Score: 525
Period size: 151 Copynumber: 2.0 Consensus size: 153
23064087 ATTTCATTAA
23064097 AATGCCAAATGACCAAAATGCCCTTAAGCCTTTTCTTTAAATTTTCATCCATACAAGCCCATTTT
1 AATGCCAAATGACCAAAATGCCCTTAAGCC---TCTTTAAATTTTCATCCATACAAGCCCATTTT
* * **
23064162 TGTTCAAAAACTTAGAAATTGGTTAAACTGCTATTTAAGGACCTCTAATTAATATTCTAAAGCAA
63 TGTCCAAAAACTTAAAAATTGGGCAAACTGCTATTTAAGGACCTCTAATTAATATTCTAAAGCAA
23064227 TTTCATACAAATTGCTTCTAGAACCC
128 TTTCATACAAATTGCTTCTAGAACCC
*
23064253 AATGCCAAATGACCAAAATGCCCTTAAGCC-C-TTAAATTTTCATCCATACAAGGCCATTTTTGT
1 AATGCCAAATGACCAAAATGCCCTTAAGCCTCTTTAAATTTTCATCCATACAAGCCCATTTTTGT
*
23064316 CCAAAAACTTAAAAATTGGGCAAATTGCTATTTAAGGACCTCTAATTAATATTCTAAAGCAATTT
66 CCAAAAACTTAAAAATTGGGCAAACTGCTATTTAAGGACCTCTAATTAATATTCTAAAGCAATTT
23064381 CATACAAATTGCTTCTAGAACCC
131 CATACAAATTGCTTCTAGAACCC
23064404 AAT
1 AAT
23064407 TTTTGTAATT
Statistics
Matches: 148, Mismatches: 6, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
151 117 0.79
152 1 0.01
156 30 0.20
ACGTcount: A:0.36, C:0.21, G:0.10, T:0.32
Consensus pattern (153 bp):
AATGCCAAATGACCAAAATGCCCTTAAGCCTCTTTAAATTTTCATCCATACAAGCCCATTTTTGT
CCAAAAACTTAAAAATTGGGCAAACTGCTATTTAAGGACCTCTAATTAATATTCTAAAGCAATTT
CATACAAATTGCTTCTAGAACCC
Found at i:23081419 original size:48 final size:48
Alignment explanation
Indices: 23081347--23081661 Score: 242
Period size: 48 Copynumber: 6.5 Consensus size: 48
23081337 TTCTCACATT
* * *
23081347 GATGCCAATAGCCCA-ACTATGGTCTTACACGA-AGTCTCATAACGGTGTC
1 GATGCC-ATATCCCAGAC-ATGGTCTTACACGAGA-TCTCATAACGATGCC
* * * * *
23081396 GATGCCATGTCCCAGACATGGTCTTATATGAGACCTCATATCGATGCC
1 GATGCCATATCCCAGACATGGTCTTACACGAGATCTCATAACGATGCC
* * * * *
23081444 AATGCCATATTCCAGATATGGTCTTACATGGGATCTCAT-ACTGATGCC
1 GATGCCATATCCCAGACATGGTCTTACACGAGATCTCATAAC-GATGCC
* * * * * *
23081492 GATGCCATGTCCCAGACGTGGTCTTATAC-AGGATCTCTTATCGATGTC
1 GATGCCATATCCCAGACATGGTCTTACACGA-GATCTCATAACGATGCC
* * * * *** *
23081540 GATGTCATATCCCAAATATGGTCTTACACGGGATCTCATCTTGATGCT
1 GATGCCATATCCCAGACATGGTCTTACACGAGATCTCATAACGATGCC
* * * ** *
23081588 GATGCCATATCACAGATATGGTCTTAAACGAGATCTCATTTCAATGCC
1 GATGCCATATCCCAGACATGGTCTTACACGAGATCTCATAACGATGCC
* *
23081636 GATGCCATATCCAAGATATGGTCTTA
1 GATGCCATATCCCAGACATGGTCTTA
23081662 TATTGGATCT
Statistics
Matches: 210, Mismatches: 50, Indels: 13
0.77 0.18 0.05
Matches are distributed among these distances:
47 1 0.00
48 199 0.95
49 10 0.05
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.30
Consensus pattern (48 bp):
GATGCCATATCCCAGACATGGTCTTACACGAGATCTCATAACGATGCC
Found at i:23081502 original size:96 final size:95
Alignment explanation
Indices: 23081395--23081678 Score: 329
Period size: 96 Copynumber: 2.9 Consensus size: 95
23081385 ATAACGGTGT
* *
23081395 CGATGCCATGTCCCAGACATGGTCTTATATGAGACCTCATATCGATGCCAATGCCATATTCCAGA
1 CGATGCCATGTCCCAGACATGGTCTTATA-GAGATCTCATATCGATGCCGATGCCATATTCCAGA
23081460 TATGGTCTTACATGGGATCTCATACTGATGC
65 TATGGTCTTACATGGGATCTCATACTGATGC
* * * * * * *
23081491 CGATGCCATGTCCCAGACGTGGTCTTATACAGGATCTCTTATCGATGTCGATGTCATATCCCAAA
1 CGATGCCATGTCCCAGACATGGTCTTATAGA-GATCTCATATCGATGCCGATGCCATATTCCAGA
*
23081556 TATGGTCTTACACGGGATCTCAT-CTTGATGC
65 TATGGTCTTACATGGGATCTCATAC-TGATGC
* * * * * * *
23081587 TGATGCCATATCACAGATATGGTCTTAAACGAGATCTCATTTCAATGCCGATGCCATA-TCCAAG
1 CGATGCCATGTCCCAGACATGGTCTTATA-GAGATCTCATATCGATGCCGATGCCATATTCC-AG
* *
23081651 ATATGGTCTTATATTGGATCTCAATACT
64 ATATGGTCTTACATGGGATCTC-ATACT
23081679 CACATGTCGT
Statistics
Matches: 155, Mismatches: 27, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
95 4 0.03
96 146 0.94
97 4 0.03
98 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (95 bp):
CGATGCCATGTCCCAGACATGGTCTTATAGAGATCTCATATCGATGCCGATGCCATATTCCAGAT
ATGGTCTTACATGGGATCTCATACTGATGC
Found at i:23086775 original size:11 final size:11
Alignment explanation
Indices: 23086759--23086784 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
23086749 GGAAGCCGAC
23086759 ATCACAATAAT
1 ATCACAATAAT
23086770 ATCACAATAAT
1 ATCACAATAAT
23086781 ATCA
1 ATCA
23086785 TACATGCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.19, G:0.00, T:0.27
Consensus pattern (11 bp):
ATCACAATAAT
Found at i:23087275 original size:27 final size:27
Alignment explanation
Indices: 23087245--23087414 Score: 159
Period size: 27 Copynumber: 6.3 Consensus size: 27
23087235 CAAAACAGTT
* * * *
23087245 ATTTTACCCTACAAGGGTATGTCGGTC
1 ATTTTACACTACAAGGGTATTTCGATA
**
23087272 ATTTTACACTACAAATGTATTTCGATA
1 ATTTTACACTACAAGGGTATTTCGATA
23087299 ATTTTACACTACAAGGGTATTTCGATA
1 ATTTTACACTACAAGGGTATTTCGATA
* * *
23087326 ATTTTACAAATA-AGGGGTGTTTC-AGTA
1 ATTTTAC-ACTACAAGGGTATTTCGA-TA
* *
23087353 ATTTTACA-AATCGAGGGTATTTCGATA
1 ATTTTACACTA-CAAGGGTATTTCGATA
* *
23087380 ATTTTACA-AATCGAGGGTATTTCGATA
1 ATTTTACACTA-CAAGGGTATTTCGATA
23087407 ATTTTACA
1 ATTTTACA
23087415 AATCGAGGGT
Statistics
Matches: 123, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
25 1 0.01
26 2 0.02
27 116 0.94
28 4 0.03
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.38
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTCGATA
Found at i:23087415 original size:27 final size:27
Alignment explanation
Indices: 23087288--23087570 Score: 314
Period size: 27 Copynumber: 10.6 Consensus size: 27
23087278 CACTACAAAT
* *
23087288 GTATTTCGATAATTTTAC-ACTACAAGG
1 GTATTTCGATAATTTTACAAAT-CGAGG
*
23087315 GTATTTCGATAATTTTACAAAT-AAGGG
1 GTATTTCGATAATTTTACAAATCGA-GG
*
23087342 GTGTTTC-AGTAATTTTACAAATCGAGG
1 GTATTTCGA-TAATTTTACAAATCGAGG
23087369 GTATTTCGATAATTTTACAAATCGAGG
1 GTATTTCGATAATTTTACAAATCGAGG
23087396 GTATTTCGATAATTTTACAAATCGAGG
1 GTATTTCGATAATTTTACAAATCGAGG
* * * * *
23087423 GTGTTTC-AGTAATTTCAAAAATTGGGG
1 GTATTTCGA-TAATTTTACAAATCGAGG
* *
23087450 GTATTTCGGTAATTTTACAAATCGAAG
1 GTATTTCGATAATTTTACAAATCGAGG
*
23087477 GTATTTC-AGTAATTTCAC-AATCGAGG
1 GTATTTCGA-TAATTTTACAAATCGAGG
* *
23087503 GTATTTCGGTAATTTTACAAAT-TAGGG
1 GTATTTCGATAATTTTACAAATCGA-GG
23087530 GTATTTCG-TAATTTTACAAATCGAGG
1 GTATTTCGATAATTTTACAAATCGAGG
23087556 GTATTTC-AGTAATTT
1 GTATTTCGA-TAATTT
23087571 CTCTTTATGA
Statistics
Matches: 219, Mismatches: 23, Indels: 28
0.81 0.09 0.10
Matches are distributed among these distances:
26 49 0.22
27 166 0.76
28 4 0.02
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (27 bp):
GTATTTCGATAATTTTACAAATCGAGG
Found at i:23087917 original size:27 final size:28
Alignment explanation
Indices: 23087885--23087947 Score: 83
Period size: 28 Copynumber: 2.3 Consensus size: 28
23087875 TGGCCCTTTT
** *
23087885 AGGCCCAATCTTATT-ACATGGCCTATC
1 AGGCCCAATCACATTCACATGGCCCATC
*
23087912 AGGCCCAATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCACATGGCCCATC
23087940 AGGCCCAA
1 AGGCCCAA
23087948 CTACTTCCCA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
27 13 0.42
28 18 0.58
ACGTcount: A:0.29, C:0.33, G:0.16, T:0.22
Consensus pattern (28 bp):
AGGCCCAATCACATTCACATGGCCCATC
Found at i:23095055 original size:28 final size:28
Alignment explanation
Indices: 23095015--23095070 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
23095005 AAAATGTTGA
*
23095015 GTTTGATTCATGATTCCGTACATATGTG
1 GTTTGATTCATGATTCCATACATATGTG
23095043 GTTTGATTCATGATTCCATACATATGTG
1 GTTTGATTCATGATTCCATACATATGTG
23095071 ACTTTAATGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.23, C:0.14, G:0.20, T:0.43
Consensus pattern (28 bp):
GTTTGATTCATGATTCCATACATATGTG
Found at i:23095532 original size:40 final size:39
Alignment explanation
Indices: 23095448--23095632 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 39
23095438 TTGAATGATG
* * * *
23095448 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
23095488 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
23095528 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
23095567 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
23095608 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
23095633 AACGAGAGCT
Statistics
Matches: 124, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:23095584 original size:79 final size:81
Alignment explanation
Indices: 23095448--23095630 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
23095438 TTGAATGATG
* *
23095448 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
23095512 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
23095527 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
23095589 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
23095607 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
23095631 TGAACGAGAG
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:23095649 original size:79 final size:77
Alignment explanation
Indices: 23095501--23095664 Score: 188
Period size: 79 Copynumber: 2.1 Consensus size: 77
23095491 GGACTAAGAT
* **
23095501 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAG-TACTAA
*
23095566 ATCCGGGTTAAGTC
65 ATCC-GGTTAAATC
* * *
23095580 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-AGCT
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTA-CT
* *
23095643 ATATCCGGTTAAATT
63 AAATCCGGTTAAATC
23095658 CCGAAGG
1 CCGAAGG
23095665 TACGTGATTT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
78 17 0.23
79 39 0.53
80 17 0.23
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.24
Consensus pattern (77 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTACTAAA
TCCGGTTAAATC
Found at i:23097073 original size:204 final size:204
Alignment explanation
Indices: 23096723--23097129 Score: 742
Period size: 204 Copynumber: 2.0 Consensus size: 204
23096713 CAGTATGTTA
*
23096723 AGAGATATTCAGGTTCTCGTGAGACAGGGCCAGAACGGTTTCTGGATTTCCTGTTCCGACTTTTG
1 AGAGATATTCAGGTTCTCGTGAGACAGGGCCAGAACGGTTTCTGGATTTCCTGTTCCGACTTTGG
*
23096788 AAATTCATTATAAATTAACCAGAGATAATTAGGAGTCATACCATATATGTATAGATTCCTCTCTG
66 AAATTCATTATAAATTAACCAGAGATAATTAGGAGTCATACCATATATGTATAGATTACTCTCTG
*
23096853 AGTCTAGTTTCTATAGAAACAAACGGCATCAGTATTGAAGCCCTGTACAAGGAGATATCCAAGTC
131 AGTCTAGTTTCTATAGAAACAAACGGCATCAGTATTGAAGCCCTGTACAAGGAGATATCAAAGTC
23096918 GTAATGCGT
196 GTAATGCGT
*
23096927 AGAGATATTCAGGTTCTCGTGAGACAGGGCTAGAACGGTTTCTGGATTTCCTGTTCCGACTTTGG
1 AGAGATATTCAGGTTCTCGTGAGACAGGGCCAGAACGGTTTCTGGATTTCCTGTTCCGACTTTGG
23096992 AAATTCATTATAAATTAACCAGAGATAATTAGGAGTCATACCATATATGTATAGATTACTCTCTG
66 AAATTCATTATAAATTAACCAGAGATAATTAGGAGTCATACCATATATGTATAGATTACTCTCTG
* ** *
23097057 AGTCTAGTTTCTATAGAAACAAACGGCATCAGTATTGGAGCTTTGTACAAGGAGATATCAAAGTG
131 AGTCTAGTTTCTATAGAAACAAACGGCATCAGTATTGAAGCCCTGTACAAGGAGATATCAAAGTC
23097122 GTAATGCG
196 GTAATGCG
23097130 CAAAGGTCAG
Statistics
Matches: 195, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
204 195 1.00
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (204 bp):
AGAGATATTCAGGTTCTCGTGAGACAGGGCCAGAACGGTTTCTGGATTTCCTGTTCCGACTTTGG
AAATTCATTATAAATTAACCAGAGATAATTAGGAGTCATACCATATATGTATAGATTACTCTCTG
AGTCTAGTTTCTATAGAAACAAACGGCATCAGTATTGAAGCCCTGTACAAGGAGATATCAAAGTC
GTAATGCGT
Found at i:23105226 original size:79 final size:79
Alignment explanation
Indices: 23105095--23105255 Score: 286
Period size: 79 Copynumber: 2.0 Consensus size: 79
23105085 CCAAATAATA
**
23105095 TCAAATAATATCAATATTAGCCATCAATGAGTTAGGACCCACATTTTAATTACGCTACACTGCAA
1 TCAAATAATATCAATATTAGCCATCAATGAGTTAGGACCCACACCTTAATTACGCTACACTGCAA
23105160 CACACTTGCGAATT
66 CACACTTGCGAATT
* *
23105174 TCAAATAATATCAATCTTAGCCATCAATGAGTTAGGACCCACACCTTAATTACGCTATACTGCAA
1 TCAAATAATATCAATATTAGCCATCAATGAGTTAGGACCCACACCTTAATTACGCTACACTGCAA
23105239 CACACTTGCGAATT
66 CACACTTGCGAATT
23105253 TCA
1 TCA
23105256 TGGTTTCTCT
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
79 78 1.00
ACGTcount: A:0.36, C:0.24, G:0.11, T:0.29
Consensus pattern (79 bp):
TCAAATAATATCAATATTAGCCATCAATGAGTTAGGACCCACACCTTAATTACGCTACACTGCAA
CACACTTGCGAATT
Found at i:23106879 original size:11 final size:11
Alignment explanation
Indices: 23106863--23106888 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
23106853 TAAACCTGTG
23106863 AAAACTTAACT
1 AAAACTTAACT
23106874 AAAACTTAACT
1 AAAACTTAACT
23106885 AAAA
1 AAAA
23106889 TGCTTGTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.62, C:0.15, G:0.00, T:0.23
Consensus pattern (11 bp):
AAAACTTAACT
Found at i:23115375 original size:40 final size:40
Alignment explanation
Indices: 23115345--23115514 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
23115335 GGACTAAGAT
* *
23115345 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* * *
23115385 CCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* ** *
23115425 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* * * * *
23115465 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
23115504 CCGAAGGCATT
1 CCGAAGGCATT
23115515 TGAACGAGGA
Statistics
Matches: 116, Mismatches: 14, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 33 0.28
40 83 0.72
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
Found at i:23115441 original size:80 final size:79
Alignment explanation
Indices: 23115292--23115514 Score: 241
Period size: 80 Copynumber: 2.8 Consensus size: 79
23115282 TTGAATGCTG
* * * * * * * * *
23115292 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAAACCGGGCTAAG-TCCCGAAGGCATT
*
23115356 TGTGCGAGATACTAAA
64 CGTGCGAGATACTAAA
* * *
23115372 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTC
* **
23115437 GTGCGAGTTGTTAAA
65 GTGCGAGATACTAAA
* * *
23115452 TCCGGGTTACGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
23115515 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
79 35 0.29
80 82 0.68
81 4 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGATACTAAA
Found at i:23115534 original size:79 final size:80
Alignment explanation
Indices: 23115367--23115549 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
23115357 GTGCGAGATA
* * *
23115367 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
23115432 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
23115447 TTAAATCCGGGTTACGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
23115511 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
23115526 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
23115550 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:23117468 original size:27 final size:27
Alignment explanation
Indices: 23117422--23117497 Score: 93
Period size: 27 Copynumber: 2.8 Consensus size: 27
23117412 GTAAAACGTC
*
23117422 CATTTTACCCTAC-AGTGGTATGTCA-GT
1 CATTTTACACTACAAG-GGTAT-TCAGGT
*
23117449 CATTTTACACTACAAGGGTATTTAGGT
1 CATTTTACACTACAAGGGTATTCAGGT
*
23117476 AATTTTACACTACAAGGGTATT
1 CATTTTACACTACAAGGGTATT
23117498 TCGATAATTT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
26 2 0.05
27 40 0.91
28 2 0.05
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (27 bp):
CATTTTACACTACAAGGGTATTCAGGT
Found at i:23117648 original size:27 final size:26
Alignment explanation
Indices: 23117463--23117697 Score: 179
Period size: 27 Copynumber: 8.7 Consensus size: 26
23117453 TTACACTACA
* * *
23117463 AGGGTATTTAGGTAATTTTAC-ACTACA
1 AGGGTATTT-CGTAATTTTACAAATA-G
*
23117490 AGGGTATTTCGATAATTTTTACAAATTG
1 AGGGTATTTCG-TAA-TTTTACAAATAG
* *
23117518 GGGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTC-GTAATTTTACAAATAG
*
23117545 AGGGTATTTCGATAATTTTACACTATA-
1 AGGGTATTTCG-TAATTTTACA-AATAG
* * *
23117572 AGAGTATTTTAGTAATTTTACACTATA-
1 AGGGTA-TTTCGTAATTTTACA-AATAG
* *
23117599 AAGGTATTTTGGTAATTTTACAAATAG
1 AGGGTA-TTTCGTAATTTTACAAATAG
*
23117626 AGGGTATTTCAGTAATTTTACAAATCG
1 AGGGTATTTC-GTAATTTTACAAATAG
* *
23117653 AAGGTATTTCGATAATTTTACAAATTG
1 AGGGTATTTCG-TAATTTTACAAATAG
* *
23117680 GGGGTATTTTGGTAATTT
1 AGGGTA-TTTCGTAATTT
23117698 CTCTTTATTA
Statistics
Matches: 174, Mismatches: 23, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
26 9 0.05
27 134 0.77
28 28 0.16
29 3 0.02
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (26 bp):
AGGGTATTTCGTAATTTTACAAATAG
Found at i:23117675 original size:54 final size:54
Alignment explanation
Indices: 23117463--23117697 Score: 237
Period size: 54 Copynumber: 4.3 Consensus size: 54
23117453 TTACACTACA
* *
23117463 AGGGTATTT-AGGTAATTTTAC-ACTAC-AAGGGTATTTCGATAATTTTTACAAATTG
1 AGGGTATTTCA-GTAATTTTACAAAT-CGAA-GGTATTTCGATAA-TTTTACAAATAG
* * * *
23117518 GGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACACTATA-
1 AGGGTATTTCAGTAATTTTACAAATCGAAGGTATTTCGATAATTTTACA-AATAG
* * * * * *
23117572 AGAGTATTTTAGTAATTTTACACTAT-AAAGGTATTTTGGTAATTTTACAAATAG
1 AGGGTATTTCAGTAATTTTACA-AATCGAAGGTATTTCGATAATTTTACAAATAG
*
23117626 AGGGTATTTCAGTAATTTTACAAATCGAAGGTATTTCGATAATTTTACAAATTG
1 AGGGTATTTCAGTAATTTTACAAATCGAAGGTATTTCGATAATTTTACAAATAG
* **
23117680 GGGGTATTTTGGTAATTT
1 AGGGTATTTCAGTAATTT
23117698 CTCTTTATTA
Statistics
Matches: 147, Mismatches: 26, Indels: 15
0.78 0.14 0.08
Matches are distributed among these distances:
53 5 0.03
54 103 0.70
55 36 0.24
56 3 0.02
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (54 bp):
AGGGTATTTCAGTAATTTTACAAATCGAAGGTATTTCGATAATTTTACAAATAG
Found at i:23117686 original size:81 final size:80
Alignment explanation
Indices: 23117463--23117697 Score: 257
Period size: 81 Copynumber: 2.9 Consensus size: 80
23117453 TTACACTACA
*
23117463 AGGGTATTT-AGGTAATTTTAC-ACTACAAGGGTATTTCGATAATTTTTACAAATTGGGGGTATT
1 AGGGTATTTCA-GTAATTTTACAAAT-CAA-GGTATTTCGATAA-TTTTACAAATTGGGGGTATT
* *
23117526 TCGGTAATTTTACAAATCG
62 TTGGTAATTTTACAAATAG
* * * ***
23117545 AGGGTATTTC-GATAATTTTACACTAT-AAGAGTATTT-TAGTAATTTTAC-ACTATAAAGGTAT
1 AGGGTATTTCAG-TAATTTTACA-AATCAAG-GTATTTCGA-TAATTTTACAAAT-TGGGGGTAT
23117606 TTTGGTAATTTTACAAATAG
61 TTTGGTAATTTTACAAATAG
23117626 AGGGTATTTCAGTAATTTTACAAATCGAAGGTATTTCGATAATTTTACAAATTGGGGGTATTTTG
1 AGGGTATTTCAGTAATTTTACAAATC-AAGGTATTTCGATAATTTTACAAATTGGGGGTATTTTG
23117691 GTAATTT
65 GTAATTT
23117698 CTCTTTATTA
Statistics
Matches: 126, Mismatches: 15, Indels: 25
0.76 0.09 0.15
Matches are distributed among these distances:
80 4 0.03
81 85 0.67
82 36 0.29
84 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (80 bp):
AGGGTATTTCAGTAATTTTACAAATCAAGGTATTTCGATAATTTTACAAATTGGGGGTATTTTGG
TAATTTTACAAATAG
Found at i:23118060 original size:28 final size:28
Alignment explanation
Indices: 23117995--23118096 Score: 120
Period size: 28 Copynumber: 3.6 Consensus size: 28
23117985 GATCCACACT
*
23117995 TATTCATTTGGCCCATTTCA-GCCCAATC-
1 TATTCATATGGCCCA--TCAGGCCCAATCA
23118023 TCATTCATATGGCCCATC-GGCCCTAATCA
1 T-ATTCATATGGCCCATCAGGCCC-AATCA
*
23118052 TATTTATATGGCCCATCAGGCCCAATCA
1 TATTCATATGGCCCATCAGGCCCAATCA
*
23118080 TATTCATATGGCTCATC
1 TATTCATATGGCCCATC
23118097 TACCCAATCA
Statistics
Matches: 65, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
27 6 0.09
28 40 0.62
29 19 0.29
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.32
Consensus pattern (28 bp):
TATTCATATGGCCCATCAGGCCCAATCA
Found at i:23121117 original size:27 final size:27
Alignment explanation
Indices: 23121043--23121426 Score: 189
Period size: 27 Copynumber: 14.2 Consensus size: 27
23121033 CAAAACAACC
* * *
23121043 ATTTTACCCTACAAGGGTATGTCAGTC
1 ATTTTACACTACAAGGGTATTTCAGTA
* *
23121070 ATTTTACACTACAAGGTTATTTTAGTA
1 ATTTTACACTACAAGGGTATTTCAGTA
*
23121097 ATTTTACACTACAAGGGTATTTCAATA
1 ATTTTACACTACAAGGGTATTTCAGTA
** **
23121124 ATTTTTA-AAAATTAGAGGTATTTCAGTA
1 A-TTTTACACTACAAG-GGTATTTCAGTA
* * * *
23121152 ATTTTATA-AATCGAGGGTATTAT-GGTA
1 ATTTTACACTA-CAAGGGTATT-TCAGTA
* * *
23121179 ATTTTAGA-AATCGAGGGTATTTCAGTA
1 ATTTTACACTA-CAAGGGTATTTCAGTA
* *
23121206 ATTTTACACTATAAGGGTATTTTAGTA
1 ATTTTACACTACAAGGGTATTTCAGTA
* **
23121233 ATTTTACACTATAAGGGTATTTTGGTA
1 ATTTTACACTACAAGGGTATTTCAGTA
* * * *
23121260 ATTTTACA-AATTAGGGGTATTTCAATA
1 ATTTTACACTA-CAAGGGTATTTCAGTA
* ** **
23121287 ATTTTGTA-AAT-TGAGGGTATTTTGGTA
1 A-TTT-TACACTACAAGGGTATTTCAGTA
* *
23121314 ATTTTGTA-AAT-C-GGGTGTATTTCAGTA
1 A-TTT-TACACTACAAGG-GTATTTCAGTA
* *
23121341 ATTTTACACTATAAGGGTATTTTAGTA
1 ATTTTACACTACAAGGGTATTTCAGTA
* * * *
23121368 ATTTTACA-TATAGAAGGAATTTCGGTA
1 ATTTTACACTACA-AGGGTATTTCAGTA
* * *
23121395 ATTTTACA-AATCAGGGGTATTTCGGTA
1 ATTTTACACTA-CAAGGGTATTTCAGTA
23121422 ATTTT
1 ATTTT
23121427 GTAAATCGGG
Statistics
Matches: 288, Mismatches: 52, Indels: 34
0.77 0.14 0.09
Matches are distributed among these distances:
25 2 0.01
26 13 0.05
27 242 0.84
28 29 0.10
29 2 0.01
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTCAGTA
Found at i:23121304 original size:81 final size:79
Alignment explanation
Indices: 23121056--23121318 Score: 228
Period size: 81 Copynumber: 3.2 Consensus size: 79
23121046 TTACCCTACA
* * * * * * * *
23121056 AGGGTATGTCAGTCATTTTACACTACAAGGTTATTTTAGTAATTTTAC-ACTACAAGGGTATTTC
1 AGGGTATTTCAGTAATTTTACACTATAAGGGTATTTTGGTAATTTTACAAAT-TAGGGGTATTTC
23121120 AATAATTTTTAAAAATT
65 AATAATTTTT--AAATT
* * * * * *
23121137 AGAGGTATTTCAGTAATTTTATA-AATCGAGGGTATTATGGTAATTTTAGAAA-TCGAGGGTATT
1 AG-GGTATTTCAGTAATTTTACACTAT-AAGGGTATTTTGGTAATTTTACAAATTAG-GGGTATT
* *
23121200 TCAGTAA-TTTTACACTATA
63 TCAATAATTTTTA-A--ATT
*
23121219 AGGGTATTTTAGTAATTTTACACTATAAGGGTATTTTGGTAATTTTACAAATTAGGGGTATTTCA
1 AGGGTATTTCAGTAATTTTACACTATAAGGGTATTTTGGTAATTTTACAAATTAGGGGTATTTCA
23121284 ATAATTTTGTAAATT
66 ATAATTTT-TAAATT
**
23121299 GAGGGTATTTTGGTAATTTT
1 -AGGGTATTTCAGTAATTTT
23121319 GTAAATCGGG
Statistics
Matches: 144, Mismatches: 26, Indels: 24
0.74 0.13 0.12
Matches are distributed among these distances:
79 1 0.01
80 3 0.02
81 78 0.54
82 59 0.41
83 3 0.02
ACGTcount: A:0.33, C:0.07, G:0.18, T:0.42
Consensus pattern (79 bp):
AGGGTATTTCAGTAATTTTACACTATAAGGGTATTTTGGTAATTTTACAAATTAGGGGTATTTCA
ATAATTTTTAAATT
Found at i:23121334 original size:135 final size:135
Alignment explanation
Indices: 23121056--23121452 Score: 557
Period size: 135 Copynumber: 2.9 Consensus size: 135
23121046 TTACCCTACA
* * * * * *
23121056 AGGGTATGTCAGTCATTTTACACTACAAGGTTATTTTAGTAATTTTACACTACAAGGGTATTTCA
1 AGGGTATTTCAGTAATTTTACACTATAAGGGTATTTTAGTAATTTTACACTATAAGGGTATTTCG
* * * * *
23121121 ATAATTTTTAAAAATTAGAGGTATTTCAGTAATTTTATAAATCGAGGGTATTATGGTAATTTTAG
66 GTAA-TTTTACAAATTAGGGGTATTTCAGTAATTTTGTAAATCGAGGGTATTTTGGTAATTTTAG
23121186 AAATCG
130 AAATCG
*
23121192 AGGGTATTTCAGTAATTTTACACTATAAGGGTATTTTAGTAATTTTACACTATAAGGGTATTTTG
1 AGGGTATTTCAGTAATTTTACACTATAAGGGTATTTTAGTAATTTTACACTATAAGGGTATTTCG
* *
23121257 GTAATTTTACAAATTAGGGGTATTTCAATAATTTTGTAAATTGAGGGTATTTTGGTAATTTT-GT
66 GTAATTTTACAAATTAGGGGTATTTCAGTAATTTTGTAAATCGAGGGTATTTTGGTAATTTTAG-
23121321 AAATCG
130 AAATCG
* *
23121327 -GGTGTATTTCAGTAATTTTACACTATAAGGGTATTTTAGTAATTTTACA-TATAGAAGGAATTT
1 AGG-GTATTTCAGTAATTTTACACTATAAGGGTATTTTAGTAATTTTACACTATA-AGGGTATTT
* * * *
23121390 CGGTAATTTTACAAATCAGGGGTATTTCGGTAATTTTGTAAATCGGGGGTATTTCGGTAATTT
64 CGGTAATTTTACAAATTAGGGGTATTTCAGTAATTTTGTAAATCGAGGGTATTTTGGTAATTT
23121453 CTCTTTATTA
Statistics
Matches: 235, Mismatches: 23, Indels: 7
0.89 0.09 0.03
Matches are distributed among these distances:
134 7 0.03
135 167 0.71
136 61 0.26
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.42
Consensus pattern (135 bp):
AGGGTATTTCAGTAATTTTACACTATAAGGGTATTTTAGTAATTTTACACTATAAGGGTATTTCG
GTAATTTTACAAATTAGGGGTATTTCAGTAATTTTGTAAATCGAGGGTATTTTGGTAATTTTAGA
AATCG
Found at i:23121390 original size:108 final size:108
Alignment explanation
Indices: 23121220--23121452 Score: 317
Period size: 108 Copynumber: 2.2 Consensus size: 108
23121210 TACACTATAA
* * * *
23121220 GGGTATTTTAGTAATTTTACACTATAAGGGTATTTTGGTAATTTTACAAATTAGGGGTATTTCAA
1 GGGTATTTCAGTAATTTTACACTATAAGGGTATTTTAGTAATTTTACAAATTAGAGGAATTTCAA
** * *
23121285 TAATTTTGTAAAT-TGAGGGTATTTTGGTAATTTTGTAAATCGG
66 TAATTTTACAAATCAG-GGGTATTTCGGTAATTTTGTAAATCGG
* * *
23121328 GTGTATTTCAGTAATTTTACACTATAAGGGTATTTTAGTAATTTTACATA-TAGAAGGAATTTCG
1 GGGTATTTCAGTAATTTTACACTATAAGGGTATTTTAGTAATTTTACAAATTAG-AGGAATTTCA
*
23121392 GTAATTTTACAAATCAGGGGTATTTCGGTAATTTTGTAAATCGG
65 ATAATTTTACAAATCAGGGGTATTTCGGTAATTTTGTAAATCGG
*
23121436 GGGTATTTCGGTAATTT
1 GGGTATTTCAGTAATTT
23121453 CTCTTTATTA
Statistics
Matches: 109, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
107 3 0.03
108 105 0.96
109 1 0.01
ACGTcount: A:0.30, C:0.06, G:0.21, T:0.43
Consensus pattern (108 bp):
GGGTATTTCAGTAATTTTACACTATAAGGGTATTTTAGTAATTTTACAAATTAGAGGAATTTCAA
TAATTTTACAAATCAGGGGTATTTCGGTAATTTTGTAAATCGG
Found at i:23121432 original size:27 final size:26
Alignment explanation
Indices: 23121087--23121452 Score: 230
Period size: 27 Copynumber: 13.5 Consensus size: 26
23121077 ACTACAAGGT
* * * *
23121087 TATTTTAGTAATTTTACACTACAAGGG
1 TATTTCAGTAATTTTACA-AATAGGGG
* * *
23121114 TATTTCAATAATTTTTAAAAATTAGAGG
1 TATTTCAGTAA-TTTTACAAA-TAGGGG
* *
23121142 TATTTCAGTAATTTTATAAATCGAGGG
1 TATTTCAGTAATTTTACAAATAG-GGG
* * *
23121169 TATTAT-GGTAATTTTAGAAATCGAGGG
1 TATT-TCAGTAATTTTACAAATAG-GGG
* *
23121196 TATTTCAGTAATTTTACACTATAAGGG
1 TATTTCAGTAATTTTACA-AATAGGGG
* * *
23121223 TATTTTAGTAATTTTACACTATAAGGG
1 TATTTCAGTAATTTTACA-AATAGGGG
**
23121250 TATTTTGGTAATTTTACAAATTAGGGG
1 TATTTCAGTAATTTTACAAA-TAGGGG
* ** *
23121277 TATTTCAATAATTTTGTAAATTGAGGG
1 TATTTCAGTAATTTTACAAATAG-GGG
** ** *
23121304 TATTTTGGTAATTTTGTAAATCGGGTG
1 TATTTCAGTAATTTTACAAATAGGG-G
* *
23121331 TATTTCAGTAATTTTACACTATAAGGG
1 TATTTCAGTAATTTTACA-AATAGGGG
* * *
23121358 TATTTTAGTAATTTTACATATAGAAGG
1 TATTTCAGTAATTTTACAAATAG-GGG
* *
23121385 AATTTCGGTAATTTTACAAATCAGGGG
1 TATTTCAGTAATTTTACAAAT-AGGGG
* ** *
23121412 TATTTCGGTAATTTTGTAAATCGGGGG
1 TATTTCAGTAATTTTACAAAT-AGGGG
*
23121439 TATTTCGGTAATTT
1 TATTTCAGTAATTT
23121453 CTCTTTATTA
Statistics
Matches: 276, Mismatches: 51, Indels: 24
0.79 0.15 0.07
Matches are distributed among these distances:
26 12 0.04
27 236 0.86
28 28 0.10
ACGTcount: A:0.32, C:0.07, G:0.19, T:0.42
Consensus pattern (26 bp):
TATTTCAGTAATTTTACAAATAGGGG
Found at i:23121814 original size:28 final size:28
Alignment explanation
Indices: 23121751--23121865 Score: 144
Period size: 28 Copynumber: 4.1 Consensus size: 28
23121741 ATCCATACTT
* * * *
23121751 ATTCATTTGGCCCATTTAGGCCCAATCTC
1 ATTCATATGGCCCA-TCAGACCCAATCAC
*
23121780 ATTCATATGGCCCATC-GACCCTAATCAT
1 ATTCATATGGCCCATCAGACCC-AATCAC
*
23121808 ATTCATATGGCCCATCAGGCCCAATCAC
1 ATTCATATGGCCCATCAGACCCAATCAC
23121836 ATTCATATGGCCCATCAG-CCCAATCAC
1 ATTCATATGGCCCATCAGACCCAATCAC
23121863 ATT
1 ATT
23121866 AATAGTCATG
Statistics
Matches: 77, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
27 16 0.21
28 44 0.57
29 17 0.22
ACGTcount: A:0.27, C:0.33, G:0.12, T:0.28
Consensus pattern (28 bp):
ATTCATATGGCCCATCAGACCCAATCAC
Found at i:23124519 original size:47 final size:45
Alignment explanation
Indices: 23124453--23124571 Score: 130
Period size: 47 Copynumber: 2.6 Consensus size: 45
23124443 TTACATAATA
* * * * *
23124453 ATGCCATAGCCCAGCTATGGTCTTACATGTAATCACATATCTCACTG
1 ATGCCATATCCCAGATATGGTCTTACA-GT-AGCACATATCACAATG
* *
23124500 ATGTCATATCCCAGATATGGTCTTATACAGTAGCATATATCACAATG
1 ATGCCATATCCCAGATATGGTC-T-TACAGTAGCACATATCACAATG
*
23124547 ATGCCATATCCCGGATATGGTCTTA
1 ATGCCATATCCCAGATATGGTCTTA
23124572 TCCAGAAATC
Statistics
Matches: 61, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
45 2 0.03
46 1 0.02
47 51 0.84
48 3 0.05
49 4 0.07
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (45 bp):
ATGCCATATCCCAGATATGGTCTTACAGTAGCACATATCACAATG
Found at i:23124644 original size:31 final size:31
Alignment explanation
Indices: 23124607--23125583 Score: 1864
Period size: 31 Copynumber: 31.5 Consensus size: 31
23124597 CTTGTAGCCA
* **
23124607 AAGCTACCACTATTCACTGATCAGGTAGTTG
1 AAGCTACCACTTTTCACTGATCAGGTAGCAG
** * *
23124638 GTGCTACCATTTTTCACTGATCAGGTAGCCG
1 AAGCTACCACTTTTCACTGATCAGGTAGCAG
* *
23124669 GAGCTACCACTTTTCACTGATCAGGTAGCCG
1 AAGCTACCACTTTTCACTGATCAGGTAGCAG
23124700 AAGCTACCACTTTTCACTGATCAGGTAGCAG
1 AAGCTACCACTTTTCACTGATCAGGTAGCAG
23124731 AAGCTACCACTTTTCACTGATCAGGTAGCAG
1 AAGCTACCACTTTTCACTGATCAGGTAGCAG
23124762 AAGCTACCACTTTTCACTGATCAGGTAGCAG
1 AAGCTACCACTTTTCACTGATCAGGTAGCAG
23124793 AAGCTACCACTTTTCACTGATCAGGTAGCAG
1 AAGCTACCACTTTTCACTGATCAGGTAGCAG
23124824 AAGCTACCACTTTTCACTGATCAGGTAGCAG
1 AAGCTACCACTTTTCACTGATCAGGTAGCAG
23124855 AAGCTACCACTTTTCACTGATCAGGTAGCAG
1 AAGCTACCACTTTTCACTGATCAGGTAGCAG
23124886 AAGCTACCACTTTTCACTGATCAGGTAGCAG
1 AAGCTACCACTTTTCACTGATCAGGTAGCAG
23124917 AAGCTACCACTTTTCACTGATCAGGTAGCAG
1 AAGCTACCACTTTTCACTGATCAGGTAGCAG
23124948 AAGCTACCACTTTTCACTGATCAGGTAGCAG
1 AAGCTACCACTTTTCACTGATCAGGTAGCAG
23124979 AAGCTACCACTTTTCACTGATCAGGTAGCAG
1 AAGCTACCACTTTTCACTGATCAGGTAGCAG
23125010 AAGCTACCACTTTTCACTGATCAGGTAGCAG
1 AAGCTACCACTTTTCACTGATCAGGTAGCAG
23125041 AAGCTACCACTTTTCACTGATCAGGTAGCAG
1 AAGCTACCACTTTTCACTGATCAGGTAGCAG
23125072 AAGCTACCACTTTTCACTGATCAGGTAGCAG
1 AAGCTACCACTTTTCACTGATCAGGTAGCAG
23125103 AAGCTACCACTTTTCACTGATCAGGTAGCAG
1 AAGCTACCACTTTTCACTGATCAGGTAGCAG
23125134 AAGCTACCACTTTTCACTGATCAGGTAGCAG
1 AAGCTACCACTTTTCACTGATCAGGTAGCAG
23125165 AAGCTACCACTTTTCACTGATCAGGTAGCAG
1 AAGCTACCACTTTTCACTGATCAGGTAGCAG
23125196 AAGCTACCACTTTTCACTGATCAGGTAGCAG
1 AAGCTACCACTTTTCACTGATCAGGTAGCAG
23125227 AAGCTACCACTTTTCACTGATCAGGTAGCAG
1 AAGCTACCACTTTTCACTGATCAGGTAGCAG
23125258 AAGCTACCACTTTTCACTGATCAGGTAGCAG
1 AAGCTACCACTTTTCACTGATCAGGTAGCAG
23125289 AAGCTACCACTTTTCACTGATCAGGTAGCAG
1 AAGCTACCACTTTTCACTGATCAGGTAGCAG
23125320 AAGCTACCACTTTTCACTGATCAGGTAGCAG
1 AAGCTACCACTTTTCACTGATCAGGTAGCAG
23125351 AAGCTACCACTTTTCACTGATCAGGTAGCAG
1 AAGCTACCACTTTTCACTGATCAGGTAGCAG
23125382 AAGCTACCACTTTTCACTGATCAGGTAGCAG
1 AAGCTACCACTTTTCACTGATCAGGTAGCAG
23125413 AAGCTACCACTTTTCACTGATCAGGTAGCAG
1 AAGCTACCACTTTTCACTGATCAGGTAGCAG
23125444 AAGCTACCACTTTTCACTGATCAGGTAGCAG
1 AAGCTACCACTTTTCACTGATCAGGTAGCAG
23125475 AAGCTACCACTTTTCACTGATCAGGTAGCAG
1 AAGCTACCACTTTTCACTGATCAGGTAGCAG
23125506 AAGCTACCACTTTTCACTGATCAGGTAGCAG
1 AAGCTACCACTTTTCACTGATCAGGTAGCAG
*
23125537 AAGCTACCACTTTTCACTGATCAGGTAGCTG
1 AAGCTACCACTTTTCACTGATCAGGTAGCAG
23125568 AAGCTACCACTTTTCA
1 AAGCTACCACTTTTCA
23125584 GTTGTCATTT
Statistics
Matches: 935, Mismatches: 11, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
31 935 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (31 bp):
AAGCTACCACTTTTCACTGATCAGGTAGCAG
Found at i:23125667 original size:50 final size:50
Alignment explanation
Indices: 23125561--23125837 Score: 421
Period size: 50 Copynumber: 5.5 Consensus size: 50
23125551 CACTGATCAG
* * * *
23125561 GTAGCTGAAGCTACCACTTTTCAGTTGTCATTTG-CCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCC-TTGATCAGATAAGT
* *
23125612 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTAATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
* *
23125662 GTAGCCGAAGTTATTACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
* *
23125712 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTAATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
* *
23125762 GTAGCCGAAGTTATTACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
23125812 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
23125838 GTTTCCATGG
Statistics
Matches: 205, Mismatches: 20, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
50 181 0.88
51 24 0.12
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
Found at i:23125707 original size:100 final size:100
Alignment explanation
Indices: 23125588--23125837 Score: 484
Period size: 100 Copynumber: 2.5 Consensus size: 100
23125578 TTTTCAGTTG
23125588 TCATTTG-CCATTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTAA
1 TCATTTGTCC-TTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTAA
23125652 TCAGATAAGTGTAGCCGAAGTTATTACTTATCACTT
65 TCAGATAAGTGTAGCCGAAGTTATTACTTATCACTT
23125688 TCATTTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTAAT
1 TCATTTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTAAT
23125753 CAGATAAGTGTAGCCGAAGTTATTACTTATCACTT
66 CAGATAAGTGTAGCCGAAGTTATTACTTATCACTT
23125788 TCATTTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTT
1 TCATTTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTT
23125838 GTTTCCATGG
Statistics
Matches: 149, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
100 147 0.99
101 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.36
Consensus pattern (100 bp):
TCATTTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTAAT
CAGATAAGTGTAGCCGAAGTTATTACTTATCACTT
Found at i:23128147 original size:3 final size:3
Alignment explanation
Indices: 23128125--23128228 Score: 84
Period size: 3 Copynumber: 34.3 Consensus size: 3
23128115 AAAGAGATAT
* * * * ** *
23128125 ATA ATA ATT ATA ATA GTA ATA ATA AAA ATA ATG GCA GTA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
23128173 CTA ATA ATA ATA GTA ATA ATA ATA A-A AGTA ATT ATA ATA ATA ATTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA A-TA
*
23128219 ATG ATA ATA A
1 ATA ATA ATA A
23128229 AACTAATAGT
Statistics
Matches: 78, Mismatches: 20, Indels: 6
0.75 0.19 0.06
Matches are distributed among these distances:
2 2 0.03
3 71 0.91
4 5 0.06
ACGTcount: A:0.59, C:0.02, G:0.07, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:23128312 original size:68 final size:68
Alignment explanation
Indices: 23128232--23128366 Score: 236
Period size: 68 Copynumber: 2.0 Consensus size: 68
23128222 ATAATAAAAC
*
23128232 TAATAGTGAGGAAAATAAAAA-AAATATTAACAGATTTAATAACAAAGTAACTAAATAACTAAAA
1 TAATAGTAAGGAAAATAAAAATAAA-ATTAACAGATTTAATAACAAAGTAACTAAATAACTAAAA
23128296 AAGA
65 AAGA
*
23128300 TAATAGTAAGGAAAATAAAAATAAAATTAACTGATTTAATAACAAAGTAACTAAATAACTAAAAA
1 TAATAGTAAGGAAAATAAAAATAAAATTAACAGATTTAATAACAAAGTAACTAAATAACTAAAAA
23128365 AG
66 AG
23128367 GGACTAAATT
Statistics
Matches: 64, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
68 61 0.95
69 3 0.05
ACGTcount: A:0.61, C:0.06, G:0.10, T:0.23
Consensus pattern (68 bp):
TAATAGTAAGGAAAATAAAAATAAAATTAACAGATTTAATAACAAAGTAACTAAATAACTAAAAA
AGA
Found at i:23129758 original size:44 final size:45
Alignment explanation
Indices: 23129693--23129845 Score: 136
Period size: 44 Copynumber: 3.4 Consensus size: 45
23129683 AATCCTACCT
* * *
23129693 ACTGCAACTTCAGAGG-TATAGGACTTGTTGCCTT-AATCTTCTTC
1 ACTGCAACTTTAG-GGAGATAGGACTTGTTGCCTTAAATCTTCTCC
* * * * *
23129737 ACTACAACTTTAGGGAGATAGGA-TTAGTTGTCTTCAGTCTGCTCC
1 ACTGCAACTTTAGGGAGATAGGACTT-GTTGCCTTAAATCTTCTCC
* * *
23129782 GCTGCAACTTTAGGGAGATAAGACTTG-TGGCTTAAATCTAT-TCC
1 ACTGCAACTTTAGGGAGATAGGACTTGTTGCCTTAAATCT-TCTCC
*
23129826 ACTGCAACTTCAGGGAGATA
1 ACTGCAACTTTAGGGAGATA
23129846 AGATTTTCCA
Statistics
Matches: 88, Mismatches: 16, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
43 4 0.05
44 54 0.61
45 28 0.32
46 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (45 bp):
ACTGCAACTTTAGGGAGATAGGACTTGTTGCCTTAAATCTTCTCC
Found at i:23130154 original size:45 final size:44
Alignment explanation
Indices: 23130075--23130744 Score: 317
Period size: 45 Copynumber: 14.9 Consensus size: 44
23130065 TATTTATAGT
* * *
23130075 TTCAATTTGTTCCACTGCAACTTCAGGGAAATAAGATTCACTATC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-ACTATC
* * * * *
23130120 TTTAGTCTGCTCCATTGCAACTTCAGGGAGATAAGACTAGTGA-C
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTACT-ATC
* * * * *
23130164 TTCAACCTGCTCCACTACAACTTTAGGGAGATAAGGTT--TGT-
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTACTATC
* * *
23130205 TTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGAGCTGTAACTTATAGC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA--T-T-AC-TAT--C
** * *
23130256 TTCAATCTATTCCACTGCAACTTCAGGGAAATGAGATTCACTATC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-ACTATC
* * * * *
23130301 TTCAGTTTGCTCCATTGCAACTTCAGGGAGATAAGGTT--TGT-
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTACTATC
** * * *
23130342 TTTGATCTGCTCTACTGCAACTTCAGAGAGATAAGAACTGTAATTTATAGC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG-A-T-T-A-CTAT--C
** * * * *
23130393 TTCAATCTATTCCACTGCAACTTTAAGGAAATAAGATTCGCTATC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-ACTATC
* * * * *
23130438 TTCAGTCTACTCCACTACAACTTCAGGGAGATAAGGCTTA-TAAC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAA-GATTACTATC
* * * * * *
23130482 TTCAACCTGCTCCGCTACAACTTCAGGGAAATAAGGTT--T-GC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTACTATC
* * * ** *
23130523 TAT-GATCTGCTCTACTACAACTTCAAAGAGATAAGATCTGTAATTTATAGC
1 T-TCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA--T-T-A-CTAT--C
* * * * * *
23130574 TTCAATCTGTTCCACTGCAACTTCAGAGAAATGAGATTCGCTAAC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-ACTATC
* * *
23130619 -TCTAGTCTGCTCTACTGCAACTTCAGGGAGATAAGACTT--TAAC
1 TTC-AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTACTATC
* * * * **
23130662 TTCAACCTGCTCCACTGCTACTTCAGGGAGATAGGATTTAGTGGC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTACTATC
* * *
23130707 TTCAATCTACTCTACTACAACTTCAGGGAGATAAGATT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
23130745 CACCATTATA
Statistics
Matches: 466, Mismatches: 119, Indels: 81
0.70 0.18 0.12
Matches are distributed among these distances:
41 84 0.18
42 5 0.01
43 40 0.09
44 74 0.16
45 152 0.33
46 5 0.01
47 8 0.02
48 10 0.02
49 3 0.01
50 2 0.00
51 83 0.18
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (44 bp):
TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTACTATC
Found at i:23130330 original size:137 final size:137
Alignment explanation
Indices: 23130170--23130473 Score: 500
Period size: 137 Copynumber: 2.2 Consensus size: 137
23130160 TGACTTCAAC
*
23130170 CTGCTCCACTACAACTTTAGGGAGATAAGGTTTGTTTTAATCTGCTCTACTGCAACTTCAGAGAG
1 CTGCTCCACTACAACTTCAGGGAGATAAGGTTTGTTTTAATCTGCTCTACTGCAACTTCAGAGAG
* * *
23130235 ATAAGAGCTGTAACTTATAGCTTCAATCTATTCCACTGCAACTTCAGGGAAATGAGATTCACTAT
66 ATAAGAACTGTAACTTATAGCTTCAATCTATTCCACTGCAACTTCAAGGAAATAAGATTCACTAT
23130300 CTTCAGT
131 CTTCAGT
* * * *
23130307 TTGCTCCATTGCAACTTCAGGGAGATAAGGTTTGTTTTGATCTGCTCTACTGCAACTTCAGAGAG
1 CTGCTCCACTACAACTTCAGGGAGATAAGGTTTGTTTTAATCTGCTCTACTGCAACTTCAGAGAG
* * *
23130372 ATAAGAACTGTAATTTATAGCTTCAATCTATTCCACTGCAACTTTAAGGAAATAAGATTCGCTAT
66 ATAAGAACTGTAACTTATAGCTTCAATCTATTCCACTGCAACTTCAAGGAAATAAGATTCACTAT
23130437 CTTCAGT
131 CTTCAGT
*
23130444 CTACTCCACTACAACTTCAGGGAGATAAGG
1 CTGCTCCACTACAACTTCAGGGAGATAAGG
23130474 CTTATAACTT
Statistics
Matches: 152, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
137 152 1.00
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.32
Consensus pattern (137 bp):
CTGCTCCACTACAACTTCAGGGAGATAAGGTTTGTTTTAATCTGCTCTACTGCAACTTCAGAGAG
ATAAGAACTGTAACTTATAGCTTCAATCTATTCCACTGCAACTTCAAGGAAATAAGATTCACTAT
CTTCAGT
Found at i:23130333 original size:181 final size:182
Alignment explanation
Indices: 23129953--23130335 Score: 534
Period size: 182 Copynumber: 2.1 Consensus size: 182
23129943 TTAGCTTCAC
* * * * * * *
23129953 TGCAACCTCAAGGTGATAAGACTTGTAATTTCAACCAGCTCCACTGCAACTTCAAGGAGATAAGT
1 TGCAACTTCAGGGAGATAAGACTAGTAACTTCAACCAGCTCCACTACAACTTCAAGGAGATAAGG
* * * * * * *
23130018 TTTGCTATGATCTGCTCTACTGCAACTTCAGAGAGATAAAATCTATTTATTTATAGTTTCAATTT
66 TTTGCTATAATCTGCTCTACTGCAACTTCAGAGAGATAAAAGCTAGTAACTTATAGCTTCAATCT
* *
23130083 GTTCCACTGCAACTTCAGGGAAATAAGATTCACTATCTTTAGTCTGCTCCAT
131 ATTCCACTGCAACTTCAGGGAAATAAGATTCACTATCTTCAGTCTGCTCCAT
* * * *
23130135 TGCAACTTCAGGGAGATAAGACTAGTGACTTCAACCTGCTCCACTACAACTTTAGGGAGATAAGG
1 TGCAACTTCAGGGAGATAAGACTAGTAACTTCAACCAGCTCCACTACAACTTCAAGGAGATAAGG
* * *
23130200 TTTGTTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGAGCT-GTAACTTATAGCTTCAATCT
66 TTTGCTATAATCTGCTCTACTGCAACTTCAGAGAGATAAAAGCTAGTAACTTATAGCTTCAATCT
* *
23130264 ATTCCACTGCAACTTCAGGGAAATGAGATTCACTATCTTCAGTTTGCTCCAT
131 ATTCCACTGCAACTTCAGGGAAATAAGATTCACTATCTTCAGTCTGCTCCAT
23130316 TGCAACTTCAGGGAGATAAG
1 TGCAACTTCAGGGAGATAAG
23130336 GTTTGTTTTG
Statistics
Matches: 176, Mismatches: 25, Indels: 1
0.87 0.12 0.00
Matches are distributed among these distances:
181 83 0.47
182 93 0.53
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (182 bp):
TGCAACTTCAGGGAGATAAGACTAGTAACTTCAACCAGCTCCACTACAACTTCAAGGAGATAAGG
TTTGCTATAATCTGCTCTACTGCAACTTCAGAGAGATAAAAGCTAGTAACTTATAGCTTCAATCT
ATTCCACTGCAACTTCAGGGAAATAAGATTCACTATCTTCAGTCTGCTCCAT
Found at i:23130439 original size:318 final size:319
Alignment explanation
Indices: 23129990--23130653 Score: 958
Period size: 318 Copynumber: 2.1 Consensus size: 319
23129980 ATTTCAACCA
* *
23129990 GCTCCACTGCAACTTCAAGGAGATAAGTTTTGCTATGATCTGCTCTACTGCAACTTCAGAGAGAT
1 GCTCCACTGCAACTTCAGGGAGATAAGGTTTGCTATGATCTGCTCTACTGCAACTTCAGAGAGAT
* * * * * *
23130055 AAAATCTATTTATTTATAGTTTCAATTTGTTCCACTGCAACTTCAGGGAAATAAGATTCACTATC
66 AAAATCTAGTAATTTATAGCTTCAATCTATTCCACTGCAACTTCAAGGAAATAAGATTCACTATC
* * * * *
23130120 TTTAGTCTGCTCCATTGCAACTTCAGGGAGATAAGAC-TAGTGACTTCAACCTGCTCCACTACAA
131 TTCAGTCTACTCCACTACAACTTCAGGGAGATAAGACTTA-TAACTTCAACCTGCTCCACTACAA
* * * * * *
23130184 CTTTAGGGAGATAAGGTTTGTTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGAGCTGTAAC
195 CTTCAGGGAAATAAGGTTTGCTATAATCTGCTCTACTACAACTTCAAAGAGATAAGAGCTGTAAC
* * *
23130249 TTATAGCTTCAATCTATTCCACTGCAACTTCAGGGAAATGAGATTCACTATCT-TCAGTTT
260 TTATAGCTTCAATCTATTCCACTGCAACTTCAGAGAAATGAGATTCACTAACTCT-AGTCT
* * *
23130309 GCTCCATTGCAACTTCAGGGAGATAAGGTTTGTTTTGATCTGCTCTACTGCAACTTCAGAGAGAT
1 GCTCCACTGCAACTTCAGGGAGATAAGGTTTGCTATGATCTGCTCTACTGCAACTTCAGAGAGAT
* *
23130374 AAGAA-CT-GTAATTTATAGCTTCAATCTATTCCACTGCAACTTTAAGGAAATAAGATTCGCTAT
66 AA-AATCTAGTAATTTATAGCTTCAATCTATTCCACTGCAACTTCAAGGAAATAAGATTCACTAT
* *
23130437 CTTCAGTCTACTCCACTACAACTTCAGGGAGATAAGGCTTATAACTTCAACCTGCTCCGCTACAA
130 CTTCAGTCTACTCCACTACAACTTCAGGGAGATAAGACTTATAACTTCAACCTGCTCCACTACAA
* * *
23130502 CTTCAGGGAAATAAGGTTTGCTATGATCTGCTCTACTACAACTTCAAAGAGATAAGATCTGTAAT
195 CTTCAGGGAAATAAGGTTTGCTATAATCTGCTCTACTACAACTTCAAAGAGATAAGAGCTGTAAC
* *
23130567 TTATAGCTTCAATCTGTTCCACTGCAACTTCAGAGAAATGAGATTCGCTAACTCTAGTCT
260 TTATAGCTTCAATCTATTCCACTGCAACTTCAGAGAAATGAGATTCACTAACTCTAGTCT
*
23130627 GCTCTACTGCAACTTCAGGGAGATAAG
1 GCTCCACTGCAACTTCAGGGAGATAAG
23130654 ACTTTAACTT
Statistics
Matches: 306, Mismatches: 36, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
318 237 0.77
319 67 0.22
320 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (319 bp):
GCTCCACTGCAACTTCAGGGAGATAAGGTTTGCTATGATCTGCTCTACTGCAACTTCAGAGAGAT
AAAATCTAGTAATTTATAGCTTCAATCTATTCCACTGCAACTTCAAGGAAATAAGATTCACTATC
TTCAGTCTACTCCACTACAACTTCAGGGAGATAAGACTTATAACTTCAACCTGCTCCACTACAAC
TTCAGGGAAATAAGGTTTGCTATAATCTGCTCTACTACAACTTCAAAGAGATAAGAGCTGTAACT
TATAGCTTCAATCTATTCCACTGCAACTTCAGAGAAATGAGATTCACTAACTCTAGTCT
Found at i:23130505 original size:181 final size:180
Alignment explanation
Indices: 23130308--23130694 Score: 562
Period size: 181 Copynumber: 2.1 Consensus size: 180
23130298 ATCTTCAGTT
* * * * * *
23130308 TGCTCCATTGCAACTTCAGGGAGATAAGGTTTGTTTTGATCTGCTCTACTGCAACTTCAGAGAGA
1 TGCTCCACTACAACTTCAGGGAGATAAGGTTTGCTATGATCTGCTCTACTACAACTTCAAAGAGA
*
23130373 TAAGAACTGTAATTTATAGCTTCAATCTATTCCACTGCAACTTTAAG-GAAATAAGATTCGCTAT
66 TAAGAACTGTAATTTATAGCTTCAATCTATTCCACTGCAAC-TTAAGAGAAATAAGATTCGCTAA
*
23130437 CT-TCAGTCTACTCCACTACAACTTCAGGGAGATAAGGCTTATAACTTCAACC
130 CTCT-AGTCTACTCCACTACAACTTCAGGGAGATAAGACTT-TAACTTCAACC
* *
23130489 TGCTCCGCTACAACTTCAGGGAAATAAGGTTTGCTATGATCTGCTCTACTACAACTTCAAAGAGA
1 TGCTCCACTACAACTTCAGGGAGATAAGGTTTGCTATGATCTGCTCTACTACAACTTCAAAGAGA
* * * *
23130554 TAAGATCTGTAATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGAGAAATGAGATTCGCTAAC
66 TAAGAACTGTAATTTATAGCTTCAATCTATTCCACTGCAACTTAAGAGAAATAAGATTCGCTAAC
* * *
23130619 TCTAGTCTGCTCTACTGCAACTTCAGGGAGATAAGACTTTAACTTCAACC
131 TCTAGTCTACTCCACTACAACTTCAGGGAGATAAGACTTTAACTTCAACC
* *
23130669 TGCTCCACTGCTACTTCAGGGAGATA
1 TGCTCCACTACAACTTCAGGGAGATA
23130695 GGATTTAGTG
Statistics
Matches: 183, Mismatches: 21, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
180 37 0.20
181 145 0.79
182 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.30
Consensus pattern (180 bp):
TGCTCCACTACAACTTCAGGGAGATAAGGTTTGCTATGATCTGCTCTACTACAACTTCAAAGAGA
TAAGAACTGTAATTTATAGCTTCAATCTATTCCACTGCAACTTAAGAGAAATAAGATTCGCTAAC
TCTAGTCTACTCCACTACAACTTCAGGGAGATAAGACTTTAACTTCAACC
Found at i:23130595 original size:92 final size:92
Alignment explanation
Indices: 23130311--23130654 Score: 315
Period size: 92 Copynumber: 3.7 Consensus size: 92
23130301 TTCAGTTTGC
* * * * *
23130311 TCCATTGCAACTTCAGGGAGATAAGGTTTGTTTTGATCTGCTCTACTGCAACTTCAGAGAGATAA
1 TCCACTGCAACTTCAGGGAAATAAGGTTTGCTATGATCTGCTCTACTACAACTTCAGAGAGATAA
*
23130376 GAACTGTAATTTATAGCTTCAATCTAT
66 GAACTGTAATTTATAGCTTCAATCTGT
* * * * * * * *
23130403 TCCACTGCAACTTTAAGGAAATAAGATTCGCTATCTTCAGTCTACTCCACTACAACTTCAGGGAG
1 TCCACTGCAACTTCAGGGAAATAAGGTTTGCTA---TGA-TCTGCTCTACTACAACTTCAGAGAG
* * *
23130468 ATAAG-GCT-T-A--TA-A-CTTCAACCTGC
62 ATAAGAACTGTAATTTATAGCTTCAATCTGT
* * *
23130492 TCCGCTACAACTTCAGGGAAATAAGGTTTGCTATGATCTGCTCTACTACAACTTCAAAGAGATAA
1 TCCACTGCAACTTCAGGGAAATAAGGTTTGCTATGATCTGCTCTACTACAACTTCAGAGAGATAA
*
23130557 GATCTGTAATTTATAGCTTCAATCTGT
66 GAACTGTAATTTATAGCTTCAATCTGT
* * * * * * *
23130584 TCCACTGCAACTTCAGAGAAATGAGATTCGCTAACTCTAGTCTGCTCTACTGCAACTTCAGGGAG
1 TCCACTGCAACTTCAGGGAAATAAGGTTTGCT-A-T-GA-TCTGCTCTACTACAACTTCAGAGAG
23130649 ATAAGA
62 ATAAGA
23130655 CTTTAACTTC
Statistics
Matches: 196, Mismatches: 41, Indels: 26
0.75 0.16 0.10
Matches are distributed among these distances:
85 26 0.13
86 4 0.02
87 1 0.01
88 1 0.01
89 35 0.18
90 3 0.02
91 3 0.02
92 60 0.31
93 2 0.01
94 2 0.01
95 5 0.03
96 54 0.28
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.31
Consensus pattern (92 bp):
TCCACTGCAACTTCAGGGAAATAAGGTTTGCTATGATCTGCTCTACTACAACTTCAGAGAGATAA
GAACTGTAATTTATAGCTTCAATCTGT
Found at i:23130651 original size:96 final size:95
Alignment explanation
Indices: 23130347--23130654 Score: 323
Period size: 96 Copynumber: 3.3 Consensus size: 95
23130337 TTTGTTTTGA
* *
23130347 TCTGCTCTACTGCAACTTCAGAGAGATAAGAACTGTAATTTATAGCTTCAATCTATTCCACTGCA
1 TCTGCTCTACTACAACTTCAGAGAGATAAGAACTGTAATTTATAGCTTCAATCTGTTCCACTGCA
* *
23130412 ACTTTA-AGGAAATAAGATTCGCTATCTTCAG
66 ACTTCAGA-GAAATAAGATTCGCTAACTT-AG
* * * * * * * *
23130443 TCTACTCCACTACAACTTCAGGGAGATAAG-GCT-T-A--TA-A-CTTCAACCTGCTCCGCTACA
1 TCTGCTCTACTACAACTTCAGAGAGATAAGAACTGTAATTTATAGCTTCAATCTGTTCCACTGCA
* * * *
23130501 ACTTCAGGGAAATAAGGTTTGCT-A-TGA-
66 ACTTCAGAGAAATAAGATTCGCTAACTTAG
* *
23130528 TCTGCTCTACTACAACTTCAAAGAGATAAGATCTGTAATTTATAGCTTCAATCTGTTCCACTGCA
1 TCTGCTCTACTACAACTTCAGAGAGATAAGAACTGTAATTTATAGCTTCAATCTGTTCCACTGCA
*
23130593 ACTTCAGAGAAATGAGATTCGCTAACTCTAG
66 ACTTCAGAGAAATAAGATTCGCTAACT-TAG
* *
23130624 TCTGCTCTACTGCAACTTCAGGGAGATAAGA
1 TCTGCTCTACTACAACTTCAGAGAGATAAGA
23130655 CTTTAACTTC
Statistics
Matches: 167, Mismatches: 33, Indels: 24
0.75 0.15 0.11
Matches are distributed among these distances:
85 26 0.16
86 3 0.02
87 2 0.01
88 1 0.01
89 33 0.20
90 3 0.02
91 3 0.02
92 35 0.21
93 2 0.01
94 2 0.01
95 3 0.02
96 54 0.32
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.30
Consensus pattern (95 bp):
TCTGCTCTACTACAACTTCAGAGAGATAAGAACTGTAATTTATAGCTTCAATCTGTTCCACTGCA
ACTTCAGAGAAATAAGATTCGCTAACTTAG
Found at i:23131668 original size:22 final size:22
Alignment explanation
Indices: 23131643--23131698 Score: 67
Period size: 23 Copynumber: 2.5 Consensus size: 22
23131633 GCCTCTTCTT
* *
23131643 TTTCTTTTTTTCTTTTCTTTTC
1 TTTCTTTTTTTCTTTCCTTTTA
*
23131665 TTTCTCTTTTTCCTTTCCTTTTA
1 TTTCT-TTTTTTCTTTCCTTTTA
*
23131688 TTTATTTTTTT
1 TTTCTTTTTTT
23131699 TTGTTTTTTA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
22 10 0.36
23 18 0.64
ACGTcount: A:0.04, C:0.18, G:0.00, T:0.79
Consensus pattern (22 bp):
TTTCTTTTTTTCTTTCCTTTTA
Found at i:23132382 original size:3 final size:3
Alignment explanation
Indices: 23132376--23132410 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
23132366 TTTTTCTTTC
23132376 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT -TT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
23132411 TATGAAATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 29 0.94
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
CTT
Found at i:23137462 original size:3 final size:3
Alignment explanation
Indices: 23137440--23137543 Score: 84
Period size: 3 Copynumber: 34.3 Consensus size: 3
23137430 AAAGAGAAAT
* * * * ** *
23137440 ATA ATA ATT ATA ATA GTA ATA ATA AAA ATA ATG GCA GTA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
23137488 CTA ATA ATA ATA GTA ATA ATA ATA A-A AGTA ATT ATA ATA ATA ATTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA A-TA
*
23137534 ATG ATA ATA A
1 ATA ATA ATA A
23137544 AACTAATAGT
Statistics
Matches: 78, Mismatches: 20, Indels: 6
0.75 0.19 0.06
Matches are distributed among these distances:
2 2 0.03
3 71 0.91
4 5 0.06
ACGTcount: A:0.59, C:0.02, G:0.07, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:23141990 original size:61 final size:61
Alignment explanation
Indices: 23141915--23142037 Score: 237
Period size: 61 Copynumber: 2.0 Consensus size: 61
23141905 ATCGCCGTTG
*
23141915 CCACTACCGTAAAAAACCTCCCTCTTTTTGGCCGAATCAAAGAACTAGGTATGCTCTTTCC
1 CCACTACCGTAAAAAACCTCCCTCTTTTTGGCCGAATCAAAGAACTAGGTATGATCTTTCC
23141976 CCACTACCGTAAAAAACCTCCCTCTTTTTGGCCGAATCAAAGAACTAGGTATGATCTTTCC
1 CCACTACCGTAAAAAACCTCCCTCTTTTTGGCCGAATCAAAGAACTAGGTATGATCTTTCC
23142037 C
1 C
23142038 TTCTTATTCC
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (61 bp):
CCACTACCGTAAAAAACCTCCCTCTTTTTGGCCGAATCAAAGAACTAGGTATGATCTTTCC
Found at i:23142484 original size:16 final size:17
Alignment explanation
Indices: 23142463--23142495 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
23142453 GCTGATGGTT
23142463 TTTAAT-TCGGTTTGGG
1 TTTAATATCGGTTTGGG
*
23142479 TTTAATATTGGTTTGGG
1 TTTAATATCGGTTTGGG
23142496 GTGTAACACC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.15, C:0.03, G:0.30, T:0.52
Consensus pattern (17 bp):
TTTAATATCGGTTTGGG
Found at i:23153258 original size:17 final size:19
Alignment explanation
Indices: 23153216--23153259 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
23153206 ATGAAATTTT
*
23153216 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
23153235 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
23153253 AA-TATTA
1 AATTATTA
23153260 CTGTAAGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:23155614 original size:25 final size:25
Alignment explanation
Indices: 23155568--23155615 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
23155558 CCTTATAATA
* * **
23155568 TAAAAATGACTATTTTTTCCCTAAG
1 TAAAAATGACCATTATACCCCTAAG
23155593 TAAAAATGACCATTATACCCCTA
1 TAAAAATGACCATTATACCCCTA
23155616 GGGTTTAAAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.40, C:0.21, G:0.06, T:0.33
Consensus pattern (25 bp):
TAAAAATGACCATTATACCCCTAAG
Found at i:23155685 original size:20 final size:20
Alignment explanation
Indices: 23155662--23155719 Score: 107
Period size: 20 Copynumber: 2.9 Consensus size: 20
23155652 TAAACATGGT
23155662 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
23155682 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
23155702 ATGTATGATATGCACATG
1 ATGTATGATATGCACATG
23155720 GTGTATTCAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:23155702 original size:11 final size:11
Alignment explanation
Indices: 23155666--23155719 Score: 53
Period size: 11 Copynumber: 5.3 Consensus size: 11
23155656 CATGGTATGT
23155666 ATGATATGCAC
1 ATGATATGCAC
* *
23155677 ATGACATG--T
1 ATGATATGCAC
23155686 ATGATATGCAC
1 ATGATATGCAC
*
23155697 ATGATATG--T
1 ATGATATGCAC
23155706 ATGATATGCAC
1 ATGATATGCAC
23155717 ATG
1 ATG
23155720 GTGTATTCAT
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
9 15 0.45
11 18 0.55
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:23155800 original size:23 final size:23
Alignment explanation
Indices: 23155770--23155842 Score: 128
Period size: 23 Copynumber: 3.1 Consensus size: 23
23155760 AGGAAGTGCA
23155770 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
23155793 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
23155816 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
23155840 AAA
1 AAA
23155843 AGAGGCTAGG
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
23 26 0.54
24 22 0.46
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:23155859 original size:25 final size:24
Alignment explanation
Indices: 23155769--23155863 Score: 140
Period size: 24 Copynumber: 4.0 Consensus size: 24
23155759 GAGGAAGTGC
23155769 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
23155793 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
23155816 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
23155840 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
23155864 ATGATAAAGT
Statistics
Matches: 65, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
23 23 0.35
24 31 0.48
25 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:23156092 original size:31 final size:31
Alignment explanation
Indices: 23156057--23156120 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
23156047 CGTTTACAGT
23156057 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
23156088 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
23156119 AA
1 AA
23156121 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:23157635 original size:48 final size:48
Alignment explanation
Indices: 23157564--23157726 Score: 317
Period size: 48 Copynumber: 3.4 Consensus size: 48
23157554 GTACCTATAC
23157564 CATGGCCCAAAGCCAAATCAAGGTAACTTATATCCGAAGCACTGATAT
1 CATGGCCCAAAGCCAAATCAAGGTAACTTATATCCGAAGCACTGATAT
23157612 CATGGCCCAAAGCCAAATCAAGGTAACTTATATCCGAAGCACTGATAT
1 CATGGCCCAAAGCCAAATCAAGGTAACTTATATCCGAAGCACTGATAT
23157660 CATGGCCCAAAGCCAAATCAAGGTAACTTATATCCGAAGCACTGATAT
1 CATGGCCCAAAGCCAAATCAAGGTAACTTATATCCGAAGCACTGATAT
*
23157708 CATGGCCCGAAGCCAAATC
1 CATGGCCCAAAGCCAAATC
23157727 TGTAATATCC
Statistics
Matches: 114, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
48 114 1.00
ACGTcount: A:0.37, C:0.26, G:0.17, T:0.20
Consensus pattern (48 bp):
CATGGCCCAAAGCCAAATCAAGGTAACTTATATCCGAAGCACTGATAT
Found at i:23158589 original size:46 final size:46
Alignment explanation
Indices: 23158539--23158714 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
23158529 TGGTTGAGCA
23158539 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
23158585 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
23158630 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
23158678 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
23158715 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:23158695 original size:93 final size:93
Alignment explanation
Indices: 23158536--23158707 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
23158526 GGATGGTTGA
* *
23158536 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
23158601 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
23158629 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
23158694 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
23158708 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:23166148 original size:46 final size:46
Alignment explanation
Indices: 23166098--23166273 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
23166088 TGGTTGAGCA
23166098 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
23166144 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
23166189 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
23166237 CCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
23166274 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:23166254 original size:93 final size:93
Alignment explanation
Indices: 23166095--23166266 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
23166085 GGATGGTTGA
* * *
23166095 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
*
23166160 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
23166188 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
23166253 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
23166267 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:23178151 original size:43 final size:43
Alignment explanation
Indices: 23178026--23178188 Score: 145
Period size: 43 Copynumber: 3.8 Consensus size: 43
23178016 CGGAATGCTC
* * * **
23178026 ATACAATGCCAATGTCCTAGACGTGGTCTTACATGT-AATCAA
1 ATACGATGCCAATGTCCCAGACATGGTCTTACACATAAATCAA
* * * *
23178068 GTATCGATGGCACTGTCCCAGACAGGGTCTT--ACATGAAATCAA
1 ATA-CGATGCCAATGTCCCAGACATGGTCTTACACAT-AAATCAA
*
23178111 ATACGATGCCAATATCCCAGACATGGTCTTACACATAAATCTCAA
1 ATACGATGCCAATGTCCCAGACATGGTCTTACACATAAA--TCAA
* * *
23178156 AT-TGATGCCGACGTCCCAGACATGGTCTTACAC
1 ATACGATGCCAATGTCCCAGACATGGTCTTACAC
23178189 GAAAACACAT
Statistics
Matches: 96, Mismatches: 18, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
41 2 0.02
42 25 0.26
43 32 0.33
44 31 0.32
45 6 0.06
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (43 bp):
ATACGATGCCAATGTCCCAGACATGGTCTTACACATAAATCAA
Found at i:23205027 original size:40 final size:40
Alignment explanation
Indices: 23204983--23205133 Score: 266
Period size: 40 Copynumber: 3.8 Consensus size: 40
23204973 TAGCAACTCA
* *
23204983 CACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCAATAG
1 CACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAG
*
23205023 CACAAATGCCTTCGGGACTTGGCCCGGATATAGTCACTAG
1 CACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAG
*
23205063 CACAAATGCCTTCGGGGCTTAGCCCGGATATAGTCACTAG
1 CACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAG
23205103 CACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CACAAATGCCTTCGGGACTTAGCCCGGATAT
23205134 CATTCGAATA
Statistics
Matches: 105, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 105 1.00
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.23
Consensus pattern (40 bp):
CACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAG
Found at i:23206299 original size:48 final size:48
Alignment explanation
Indices: 23206225--23206324 Score: 191
Period size: 48 Copynumber: 2.1 Consensus size: 48
23206215 CAATCTCATC
23206225 TTTTAATAACTAAAACCGAATACTCAAACCATCACCAAGATTTCAAAA
1 TTTTAATAACTAAAACCGAATACTCAAACCATCACCAAGATTTCAAAA
*
23206273 TTTTAATAACTAAAACCGAATGCTCAAACCATCACCAAGATTTCAAAA
1 TTTTAATAACTAAAACCGAATACTCAAACCATCACCAAGATTTCAAAA
23206321 TTTT
1 TTTT
23206325 GACATGGGTT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 51 1.00
ACGTcount: A:0.45, C:0.22, G:0.05, T:0.28
Consensus pattern (48 bp):
TTTTAATAACTAAAACCGAATACTCAAACCATCACCAAGATTTCAAAA
Found at i:23213582 original size:43 final size:42
Alignment explanation
Indices: 23213511--23213633 Score: 122
Period size: 43 Copynumber: 2.9 Consensus size: 42
23213501 TGGAAAGCTC
* * ** *
23213511 ATACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAA
1 ATACAATGCCGATGTCCCAGACAAGGTCTTACACGTAATCAA
* * * *
23213553 ATATCGATGCC-ACTGTCCCTGACAAGGTCTTATACGAAATCAA
1 ATA-CAATGCCGA-TGTCCCAGACAAGGTCTTACACGTAATCAA
**
23213596 ATACAATGCCGATGTCCCAGACATTGTCTTACACGTAA
1 ATACAATGCCGATGTCCCAGACAAGGTCTTACACGTAA
23213634 ATAATAAGTC
Statistics
Matches: 64, Mismatches: 14, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
42 31 0.48
43 33 0.52
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (42 bp):
ATACAATGCCGATGTCCCAGACAAGGTCTTACACGTAATCAA
Found at i:23217601 original size:26 final size:26
Alignment explanation
Indices: 23217572--23217685 Score: 113
Period size: 26 Copynumber: 4.3 Consensus size: 26
23217562 AGCATGGCTC
*
23217572 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
* *
23217598 CCAGAATAGATATTGTGGCAGAGCCA
1 CCAGAACAGATATTGTGACAGAGCCA
*
23217624 CCAGAACAGATATTTGTGGC-GTAGCCA
1 CCAGAACAGATA-TTGTGACAG-AGCCA
* * * *
23217651 CCAAAAACAGATATTTGTGGCATAGGCA
1 CC-AGAACAGATA-TTGTGACAGAGCCA
23217679 CCAGAAC
1 CCAGAAC
23217686 GCTTCCTCCA
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
26 35 0.46
27 18 0.24
28 23 0.30
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:23217668 original size:28 final size:28
Alignment explanation
Indices: 23217605--23217681 Score: 97
Period size: 28 Copynumber: 2.8 Consensus size: 28
23217595 TCACCAGAAT
*
23217605 AGATA-TTGTGGCAG-AGCCACC-AGAAC
1 AGATATTTGTGGC-GTAGCCACCAAAAAC
23217631 AGATATTTGTGGCGTAGCCACCAAAAAC
1 AGATATTTGTGGCGTAGCCACCAAAAAC
* *
23217659 AGATATTTGTGGCATAGGCACCA
1 AGATATTTGTGGCGTAGCCACCA
23217682 GAACGCTTCC
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
26 6 0.13
27 14 0.31
28 25 0.56
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.21
Consensus pattern (28 bp):
AGATATTTGTGGCGTAGCCACCAAAAAC
Found at i:23217682 original size:55 final size:52
Alignment explanation
Indices: 23217572--23217685 Score: 131
Period size: 55 Copynumber: 2.1 Consensus size: 52
23217562 AGCATGGCTC
* * *
23217572 CCAGAACAGATATTGTGACAGAGTCACCAGAATAGATATTGTGGCAGAGCCA
1 CCAGAACAGATATTGTGACAGAGCCACCAAAACAGATATTGTGGCAGAGCCA
* * *
23217624 CCAGAACAGATATTTGTGGC-GTAGCCACCAAAAACAGATATTTGTGGCATAGGCA
1 CCAGAACAGATA-TTGTGACAG-AGCCACC-AAAACAGATA-TTGTGGCAGAGCCA
23217679 CCAGAAC
1 CCAGAAC
23217686 GCTTCCTCCA
Statistics
Matches: 52, Mismatches: 6, Indels: 5
0.83 0.10 0.08
Matches are distributed among these distances:
52 13 0.25
53 12 0.23
54 8 0.15
55 19 0.37
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (52 bp):
CCAGAACAGATATTGTGACAGAGCCACCAAAACAGATATTGTGGCAGAGCCA
Found at i:23219818 original size:27 final size:26
Alignment explanation
Indices: 23219772--23219860 Score: 106
Period size: 27 Copynumber: 3.3 Consensus size: 26
23219762 CTTCTAATGT
*
23219772 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCATAGCCA
* *
23219799 CCAGAATAGATATATATGGCATAGCCA
1 CCAGAACAGATAT-TGTGGCATAGCCA
*
23219826 CCAAAAACAGATATTTGTGGCATAGCCA
1 CC-AGAACAGATA-TTGTGGCATAGCCA
23219854 CCAGAAC
1 CCAGAAC
23219861 GCTTCCTCCA
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
26 7 0.13
27 22 0.42
28 22 0.42
29 1 0.02
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCATAGCCA
Found at i:23219838 original size:28 final size:27
Alignment explanation
Indices: 23219778--23219856 Score: 97
Period size: 28 Copynumber: 2.9 Consensus size: 27
23219768 ATGTCCAGAT
* *
23219778 ACAGATATTGTGGCAGAGCCACC-AGA
1 ACAGATATTGTGGCATAGCCACCAAAA
* *
23219804 ATAGATATATATGGCATAGCCACCAAAA
1 ACAGATAT-TGTGGCATAGCCACCAAAA
23219832 ACAGATATTTGTGGCATAGCCACCA
1 ACAGATA-TTGTGGCATAGCCACCA
23219857 GAACGCTTCC
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
26 7 0.16
27 13 0.30
28 23 0.52
29 1 0.02
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.20
Consensus pattern (27 bp):
ACAGATATTGTGGCATAGCCACCAAAA
Found at i:23221623 original size:43 final size:43
Alignment explanation
Indices: 23221575--23221661 Score: 165
Period size: 43 Copynumber: 2.0 Consensus size: 43
23221565 ACTATACATC
23221575 TCGAACCTACGACCTTCTAAACACACACATACGCTGCTCGCCA
1 TCGAACCTACGACCTTCTAAACACACACATACGCTGCTCGCCA
*
23221618 TCGAACCTGCGACCTTCTAAACACACACATACGCTGCTCGCCA
1 TCGAACCTACGACCTTCTAAACACACACATACGCTGCTCGCCA
23221661 T
1 T
23221662 TGTACCGAAG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.29, C:0.39, G:0.13, T:0.20
Consensus pattern (43 bp):
TCGAACCTACGACCTTCTAAACACACACATACGCTGCTCGCCA
Found at i:23224348 original size:27 final size:27
Alignment explanation
Indices: 23224311--23224425 Score: 144
Period size: 27 Copynumber: 4.3 Consensus size: 27
23224301 AGCATGGCTG
* *
23224311 CCAGAACAGATA-TTGTGACATAGTCA
1 CCAGAACAGATATTTGTGGCATAGCCA
*
23224337 CCAGATACAGATA-TTGTGGCAGAGCCA
1 CCAGA-ACAGATATTTGTGGCATAGCCA
* *
23224364 CCAGAATAGATATTTATGGCATAGCCA
1 CCAGAACAGATATTTGTGGCATAGCCA
23224391 CCAGAAACAGATATTTGTGGCATAGCCA
1 CCAG-AACAGATATTTGTGGCATAGCCA
*
23224419 CAAGAAC
1 CCAGAAC
23224426 GTTTCCTCCA
Statistics
Matches: 77, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
26 11 0.14
27 42 0.55
28 24 0.31
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21
Consensus pattern (27 bp):
CCAGAACAGATATTTGTGGCATAGCCA
Found at i:23229666 original size:46 final size:46
Alignment explanation
Indices: 23229565--23229652 Score: 122
Period size: 46 Copynumber: 1.9 Consensus size: 46
23229555 TGTAACCCGC
* * * *
23229565 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCCCAT
* *
23229611 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTC
23229653 AACCATCCTA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.27, C:0.31, G:0.23, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCCCAT
Found at i:23230387 original size:318 final size:317
Alignment explanation
Indices: 23229799--23230423 Score: 1090
Period size: 318 Copynumber: 2.0 Consensus size: 317
23229789 AGTAGTTCAC
* *
23229799 ATAATTTACATATTATTTGAAATTAACCACAAAGCATACATTTCATAATAAAATTTAGCATAACA
1 ATAATTGACATATTATTTGAAATTAACCACAAAGCATACATTTCATAATAAAATTCAGCATAACA
* * ** *
23229864 TATAATTAACATCAATAACTTAAAAATAACCATTATGCTACATTATTTACACATGAACTTACCTT
66 CATAATTAACATCAAAAACAAAAAAATAACAATTATGCTACATTATTTACACATGAACTTACCTT
23229929 GGTACCAAAATACAAAGATTTTGCAATTTAGTCCACAATCTTTTCTTTTCCTCGATTGAGGTCGA
131 GGTACCAAAATACAAAGATTTTGCAATTTAGTCCACAATCTTTTCTTTTCCTCGATTGAGGTCGA
23229994 TTCCACGTCTTTCTTGATCTAAAATAACACATTTAGCTCATTTAATACATACATTATCAAATTAA
196 TTCCACGTCTTTCTTGATCTAAAATAACACATTTAGCTCATTTAATACATACATTATCAAATTAA
*
23230059 TCCTTAACTCAAATTTTGGCAAAATTACAATTTTACCCCTAAACTTTGATAACTCAT
261 TCCTTAACTCAAAATTTGGCAAAATTACAATTTTACCCCTAAACTTTGATAACTCAT
* * *
23230116 ATAATTGACATGTTATTTGAAATTAACTACAAAGCATACATTTCATAATGAAATTCAGCATAACA
1 ATAATTGACATATTATTTGAAATTAACCACAAAGCATACATTTCATAATAAAATTCAGCATAACA
*
23230181 CATAATTAATATCAAAAACAAAAAAAATAACAATTATGCTACATTATTTACACATGAACTTACCT
66 CATAATTAACATCAAAAAC-AAAAAAATAACAATTATGCTACATTATTTACACATGAACTTACCT
23230246 TGGTACCAAAATACAAAGATTTTGCAATTTAGTCCACAATCTTTTCTTTTCCTCGATTGAGGTCG
130 TGGTACCAAAATACAAAGATTTTGCAATTTAGTCCACAATCTTTTCTTTTCCTCGATTGAGGTCG
*
23230311 ATTCCATGTCTTTCTTGATCTAAAATAACACATTTAGCTCATTTAATAC-TCACATTATCAAATT
195 ATTCCACGTCTTTCTTGATCTAAAATAACACATTTAGCTCATTTAATACAT-ACATTATCAAATT
* *
23230375 AATCCTTAACTCAAAATTTGGCAAAATTATAATTTTGCCCCTAAACTTT
259 AATCCTTAACTCAAAATTTGGCAAAATTACAATTTTACCCCTAAACTTT
23230424 TGCATATTTA
Statistics
Matches: 291, Mismatches: 15, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
317 77 0.26
318 214 0.74
ACGTcount: A:0.39, C:0.19, G:0.07, T:0.36
Consensus pattern (317 bp):
ATAATTGACATATTATTTGAAATTAACCACAAAGCATACATTTCATAATAAAATTCAGCATAACA
CATAATTAACATCAAAAACAAAAAAATAACAATTATGCTACATTATTTACACATGAACTTACCTT
GGTACCAAAATACAAAGATTTTGCAATTTAGTCCACAATCTTTTCTTTTCCTCGATTGAGGTCGA
TTCCACGTCTTTCTTGATCTAAAATAACACATTTAGCTCATTTAATACATACATTATCAAATTAA
TCCTTAACTCAAAATTTGGCAAAATTACAATTTTACCCCTAAACTTTGATAACTCAT
Found at i:23236313 original size:47 final size:47
Alignment explanation
Indices: 23236244--23236333 Score: 153
Period size: 47 Copynumber: 1.9 Consensus size: 47
23236234 TCAAGATCCG
23236244 TAAATTTTCCATAAATCTAGACTCATATACCTATCTACTAATTTTCA
1 TAAATTTTCCATAAATCTAGACTCATATACCTATCTACTAATTTTCA
* * *
23236291 TAAATTTTCCCTGAATCTAGACTCATATATCTATCTACTAATT
1 TAAATTTTCCATAAATCTAGACTCATATACCTATCTACTAATT
23236334 GTTTTCTAGA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 40 1.00
ACGTcount: A:0.34, C:0.21, G:0.03, T:0.41
Consensus pattern (47 bp):
TAAATTTTCCATAAATCTAGACTCATATACCTATCTACTAATTTTCA
Found at i:23242582 original size:40 final size:40
Alignment explanation
Indices: 23242524--23242599 Score: 134
Period size: 40 Copynumber: 1.9 Consensus size: 40
23242514 AAAGAAGTGA
*
23242524 GATAGATCTATGAGGCTCTGCATTGATTACCATCAAGGAG
1 GATAGATCTATGAAGCTCTGCATTGATTACCATCAAGGAG
*
23242564 GATAGATCTATGAAGCTCTGCATTGATTACCGTCAA
1 GATAGATCTATGAAGCTCTGCATTGATTACCATCAA
23242600 CTAAACAAGT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.29
Consensus pattern (40 bp):
GATAGATCTATGAAGCTCTGCATTGATTACCATCAAGGAG
Found at i:23245955 original size:29 final size:29
Alignment explanation
Indices: 23245913--23245970 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
23245903 ATGATTTTTC
23245913 TTAGTTTCCATTTCTTCTTCAATTCAAAA
1 TTAGTTTCCATTTCTTCTTCAATTCAAAA
*
23245942 TTAGTTTCTATTTCTTCTTCAATTCAAAA
1 TTAGTTTCCATTTCTTCTTCAATTCAAAA
23245971 CCCTGATGAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.28, C:0.19, G:0.03, T:0.50
Consensus pattern (29 bp):
TTAGTTTCCATTTCTTCTTCAATTCAAAA
Found at i:23251188 original size:27 final size:27
Alignment explanation
Indices: 23251158--23251291 Score: 196
Period size: 27 Copynumber: 5.0 Consensus size: 27
23251148 CCCTAATTGA
*
23251158 TAAAATAATTGTTTTGCCCTTATGTGG
1 TAAAATGATTGTTTTGCCCTTATGTGG
23251185 TAAAATGATTGTTTTGCCCTTATGTGG
1 TAAAATGATTGTTTTGCCCTTATGTGG
* *
23251212 TAAAATGACTGTTTTACCCTTATGTGG
1 TAAAATGATTGTTTTGCCCTTATGTGG
*
23251239 TAAAATGATTGTTTTGCCCTTATATGG
1 TAAAATGATTGTTTTGCCCTTATGTGG
* * * *
23251266 TAAATTGACTATTTTGCCCCTATGTG
1 TAAAATGATTGTTTTGCCCTTATGTG
23251292 ATATATGTTT
Statistics
Matches: 96, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 96 1.00
ACGTcount: A:0.25, C:0.13, G:0.19, T:0.43
Consensus pattern (27 bp):
TAAAATGATTGTTTTGCCCTTATGTGG
Found at i:23263008 original size:34 final size:34
Alignment explanation
Indices: 23262942--23263008 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 34
23262932 GTTTCAACTA
* *
23262942 GGGCCTTAGCCCATTACAGTAACAGTATCAGTGT
1 GGGCCTTAGCCCATTACAGTAACAGCAACAGTGT
* *
23262976 GGGCCTTAGCCCAATT-CAGTGATAGCAACAGTG
1 GGGCCTTAGCCC-ATTACAGTAACAGCAACAGTG
23263009 CCAATATGCA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
34 25 0.89
35 3 0.11
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (34 bp):
GGGCCTTAGCCCATTACAGTAACAGCAACAGTGT
Found at i:23268571 original size:27 final size:27
Alignment explanation
Indices: 23268541--23268756 Score: 152
Period size: 27 Copynumber: 8.0 Consensus size: 27
23268531 CCTCTAAGGT
* * *
23268541 AAAATTACTGAAATACCCTTGTTTTAC
1 AAAATTACAGAAATACCCTTGATTTGC
* *
23268568 AAAATTACCA-AAATACCCTCGATTTGT
1 AAAATTA-CAGAAATACCCTTGATTTGC
* * * *
23268595 AAAATTACCA-AAATACCCCTAACTTGG
1 AAAATTA-CAGAAATACCCTTGATTTGC
* * * *
23268622 AAAATTATC-GATATACTCGTGATTTGG
1 AAAATTA-CAGAAATACCCTTGATTTGC
* * *
23268649 AAAATTACAAAAATACCCCTGATTTAC
1 AAAATTACAGAAATACCCTTGATTTGC
* *
23268676 AAAGTTACAGAAATACCCTTAACTTT-C
1 AAAATTACAGAAATACCCTTGA-TTTGC
* * *
23268703 AAAAATTACAGAAATATCATTGGTTTGC
1 -AAAATTACAGAAATACCCTTGATTTGC
* *
23268731 AAAATTACTGAAATACCCTTGGTTTG
1 AAAATTACAGAAATACCCTTGATTTG
23268757 TAGATTTACC
Statistics
Matches: 149, Mismatches: 34, Indels: 12
0.76 0.17 0.06
Matches are distributed among these distances:
26 1 0.01
27 126 0.85
28 22 0.15
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (27 bp):
AAAATTACAGAAATACCCTTGATTTGC
Found at i:23269110 original size:40 final size:41
Alignment explanation
Indices: 23269016--23269136 Score: 190
Period size: 40 Copynumber: 3.0 Consensus size: 41
23269006 GGAGGAAGAA
* *
23269016 ATTAAGGATCGCATAGTTGCTTGACGACCGTGGATCTACCG
1 ATTAAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
* *
23269057 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGA-CCATCG
1 ATTAAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
*
23269097 ATTAAGGATCGCATGGTTGCTTGACGACCATGGATCCACC
1 ATTAAGGATCGCATGGTTGCTTGACGACCGTGGATCCACC
23269137 AGTGGCTTTT
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
40 36 0.50
41 36 0.50
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (41 bp):
ATTAAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
Found at i:23269805 original size:41 final size:41
Alignment explanation
Indices: 23269760--23269859 Score: 164
Period size: 41 Copynumber: 2.4 Consensus size: 41
23269750 CATGGTCATT
23269760 AAGCAACCATGCGATCCTTAATCGGTGGATCCACGATAATC
1 AAGCAACCATGCGATCCTTAATCGGTGGATCCACGATAATC
* * **
23269801 AAGCAACCATACGATCCTTAATCGGTGGATCCACGGTCGTC
1 AAGCAACCATGCGATCCTTAATCGGTGGATCCACGATAATC
23269842 AAGCAACCATGCGATCCT
1 AAGCAACCATGCGATCCT
23269860 CAATTTCATC
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 54 1.00
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (41 bp):
AAGCAACCATGCGATCCTTAATCGGTGGATCCACGATAATC
Found at i:23285442 original size:23 final size:24
Alignment explanation
Indices: 23285404--23285448 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
23285394 TTTGCTCTTC
*
23285404 TAGCATGAACTTGTCTTACCTTTT
1 TAGCATGAACTCGTCTTACCTTTT
23285428 TAGCAT-AACTCGTCTTACCTT
1 TAGCATGAACTCGTCTTACCTT
23285449 ACCTTACCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.42
Consensus pattern (24 bp):
TAGCATGAACTCGTCTTACCTTTT
Found at i:23285704 original size:55 final size:53
Alignment explanation
Indices: 23285564--23285771 Score: 231
Period size: 55 Copynumber: 3.8 Consensus size: 53
23285554 ATCCTTTTGA
* * *
23285564 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGTCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAG
* * *
23285617 AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG
* * * * *
23285671 TAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGA-
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAG
*
23285725 AACCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 AA-CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTA-CCTT
23285772 AAACCCTAAT
Statistics
Matches: 129, Mismatches: 19, Indels: 12
0.81 0.12 0.08
Matches are distributed among these distances:
52 2 0.02
53 45 0.35
54 9 0.07
55 71 0.55
56 2 0.02
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (53 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAG
Found at i:23285708 original size:108 final size:110
Alignment explanation
Indices: 23285564--23285764 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
23285554 ATCCTTTTGA
* * *
23285564 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGTCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
23285627 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
23285672 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
23285737 TGCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
23285765 TATCCTTAAA
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.57
109 7 0.08
110 28 0.33
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:23292583 original size:7 final size:7
Alignment explanation
Indices: 23292571--23292660 Score: 51
Period size: 7 Copynumber: 12.0 Consensus size: 7
23292561 TATATAAAAA
23292571 TATATAT
1 TATATAT
23292578 TATATAT
1 TATATAT
23292585 TATATTAACT
1 TATA-T-A-T
23292595 TA-ATAT
1 TATATAT
23292601 T-TAAGTAT
1 TAT-A-TAT
23292609 TAATATAT
1 T-ATATAT
*
23292617 AATATAT
1 TATATAT
23292624 TATATTAT
1 TATA-TAT
23292632 TATAT-T
1 TATATAT
*
23292638 ATATATAA
1 -TATATAT
23292646 TATAATAT
1 TAT-ATAT
*
23292654 AATATAT
1 TATATAT
23292661 AAAACATAAG
Statistics
Matches: 66, Mismatches: 5, Indels: 24
0.69 0.05 0.25
Matches are distributed among these distances:
6 3 0.05
7 35 0.53
8 21 0.32
9 3 0.05
10 4 0.06
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (7 bp):
TATATAT
Found at i:23292652 original size:39 final size:40
Alignment explanation
Indices: 23292560--23292654 Score: 96
Period size: 39 Copynumber: 2.5 Consensus size: 40
23292550 AAGATATTTT
* *
23292560 TTATATA-AAAAT-ATATATTATATATTATATTAACTTAA
1 TTATATATAATATAATATATAATATATTATATTAACTTAA
23292598 -TAT-T-TAAGTATTAATATATAATATATTATATT-A-TTATA
1 TTATATATAA-TA-TAATATATAATATATTATATTAACTTA-A
23292636 TTATATATAATATAATATA
1 TTATATATAATATAATATA
23292655 ATATATAAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 15
0.73 0.03 0.23
Matches are distributed among these distances:
36 3 0.06
37 7 0.15
38 3 0.06
39 28 0.60
40 3 0.06
41 3 0.06
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (40 bp):
TTATATATAATATAATATATAATATATTATATTAACTTAA
Found at i:23292662 original size:7 final size:7
Alignment explanation
Indices: 23292569--23292649 Score: 53
Period size: 7 Copynumber: 11.9 Consensus size: 7
23292559 TTTATATAAA
23292569 AATATAT
1 AATATAT
*
23292576 ATTATAT
1 AATATAT
*
23292583 ATTATATT
1 AATATA-T
*
23292591 AA-CT-T
1 AATATAT
*
23292596 AATATTT
1 AATATAT
23292603 AAGTAT-T
1 AA-TATAT
23292610 AATATAT
1 AATATAT
23292617 AATATAT
1 AATATAT
*
23292624 TATAT-T
1 AATATAT
*
23292630 ATTATAT
1 AATATAT
*
23292637 TATATAT
1 AATATAT
23292644 AATATA
1 AATATA
23292650 ATATAATATA
Statistics
Matches: 58, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
5 3 0.05
6 8 0.14
7 42 0.72
8 5 0.09
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (7 bp):
AATATAT
Found at i:23293871 original size:22 final size:22
Alignment explanation
Indices: 23293842--23293895 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
23293832 TAGCACGTTA
*
23293842 AGTGCTCTCTGTTTAGCACATCT
1 AGTGCTCTCTGTATAGCAC-TCT
*
23293865 -GTGCTCTCTGTATAGCACTTT
1 AGTGCTCTCTGTATAGCACTCT
23293886 AGTGCTCTCT
1 AGTGCTCTCT
23293896 ATTCGTTTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 2 0.07
22 26 0.93
ACGTcount: A:0.15, C:0.26, G:0.19, T:0.41
Consensus pattern (22 bp):
AGTGCTCTCTGTATAGCACTCT
Done.