Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 72 of 284
Found at i:24841344 original size:101 final size:101
Alignment explanation
Indices: 24841169--24841356 Score: 254
Period size: 101 Copynumber: 1.9 Consensus size: 101
24841159 AATTGACGGA
* **
24841169 TAAGACCATAGCAGGGCTATGGCAAACCGATGATAAGGCCATAACTGGGTTATGGCACTTTGAAC
1 TAAGACCATAGCAGGGCTATGGCAAACCGATGATAAGACCATAACTGGGTTATGGCACTACGAAC
*
24841234 ATAAGACCATGGTTGGACCATGATAGTATTTATATG
66 ATAAGACCATGGCTGGACCATGATAGTATTTATATG
* ***
24841270 TAAGACCATAGCTGGGCTATGG-AATTTTGATGATAAGACCATAACTGGGTTATGGCACTACG-A
1 TAAGACCATAGCAGGGCTATGGCAA-ACCGATGATAAGACCATAACTGGGTTATGGCACTACGAA
* *
24841333 CTGTAAGACCATGGCTGGGCCATG
65 C-ATAAGACCATGGCTGGACCATG
24841357 GCAATGCATG
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
100 4 0.05
101 71 0.95
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.26
Consensus pattern (101 bp):
TAAGACCATAGCAGGGCTATGGCAAACCGATGATAAGACCATAACTGGGTTATGGCACTACGAAC
ATAAGACCATGGCTGGACCATGATAGTATTTATATG
Found at i:24841358 original size:33 final size:32
Alignment explanation
Indices: 24841267--24841393 Score: 96
Period size: 33 Copynumber: 3.9 Consensus size: 32
24841257 TAGTATTTAT
* * **
24841267 ATGTAAGACCATAGCTGGGCTATGGAATTTTG
1 ATGTAAGACCATAGCTGGGCTATGGCACTACG
* *
24841299 ATGATAAGACCATAACTGGGTTATGGCACTACG
1 ATG-TAAGACCATAGCTGGGCTATGGCACTACG
* * * *
24841332 ACTGTAAGACCATGGCTGGGCCATGGCAATGC-
1 A-TGTAAGACCATAGCTGGGCTATGGCACTACG
*
24841364 ATGTGTAAGACCATAG-TCGGACTATGGCAC
1 A--TGTAAGACCATAGCT-GGGCTATGGCAC
24841394 AAAGAAAATG
Statistics
Matches: 74, Mismatches: 17, Indels: 7
0.76 0.17 0.07
Matches are distributed among these distances:
32 5 0.07
33 67 0.91
34 2 0.03
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (32 bp):
ATGTAAGACCATAGCTGGGCTATGGCACTACG
Found at i:24845348 original size:17 final size:17
Alignment explanation
Indices: 24845324--24845363 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
24845314 GGCGCGACCC
*
24845324 ATTTTTTTAATAATATAT
1 ATTTTTTAAATAATAT-T
*
24845342 ATTTTTTAAATATTATT
1 ATTTTTTAAATAATATT
24845359 ATTTT
1 ATTTT
24845364 ATTATATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
ATTTTTTAAATAATATT
Found at i:24845883 original size:27 final size:27
Alignment explanation
Indices: 24845853--24845930 Score: 138
Period size: 27 Copynumber: 2.9 Consensus size: 27
24845843 GACTAATCGA
*
24845853 GCCTTTCTCAGAGGCGCAAATGGTTGT
1 GCCTATCTCAGAGGCGCAAATGGTTGT
*
24845880 GCCTATCTCAGAGGCGCAAATGATTGT
1 GCCTATCTCAGAGGCGCAAATGGTTGT
24845907 GCCTATCTCAGAGGCGCAAATGGT
1 GCCTATCTCAGAGGCGCAAATGGT
24845931 GGGGCCCACA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (27 bp):
GCCTATCTCAGAGGCGCAAATGGTTGT
Found at i:24852094 original size:509 final size:509
Alignment explanation
Indices: 24850634--24852328 Score: 3338
Period size: 509 Copynumber: 3.3 Consensus size: 509
24850624 CTTTTAATTG
*
24850634 CCCAAAACCATCCACTAAATTATTAAATTGTATAATTACCATTAAAGTCCCTTTTATTTTATTAA
1 CCCAAAACCATCCACTAAATTCTTAAATTGTATAATTACCATTAAAGTCCCTTTTATTTTATTAA
24850699 ATAAACCATTTAATCACTCAAATTAAATAATGACTAAATTTTACATCTTTTACAATTTACCCCTT
66 ATAAACCATTTAATCACTCAAATTAAATAATGACTAAATTTTACATCTTTTACAATTTACCCCTT
24850764 TTTAATTAATTAACTATCGAAACATTAAAATTTTTCAATGAAACTTTGATACCACCTTAATGACA
131 TTTAATTAATTAACTATCGAAACATTAAAATTTTTCAATGAAACTTTGATACCACCTTAATGACA
24850829 CTCCGCAAGTATTTATAAAAATATTTATGATTTGGTTTATAGAAACGAGGTCCCGATACCTCATT
196 CTCCGCAAGTATTTATAAAAATATTTATGATTTGGTTTATAGAAACGAGGTCCCGATACCTCATT
24850894 TTCTAAAGCCACTTGACCTTAGAGTCTTACCACTTGAACTTAATAAATCGTTATAAAACATAAAT
261 TTCTAAAGCCACTTGACCTTAGAGTCTTACCACTTGAACTTAATAAATCGTTATAAAACATAAAT
24850959 TACCAAATTAAAAACCTTTTTAAAACCATATTTGACTCGTAAATATTAAATAATAACATTTACGA
326 TACCAAATTAAAAACCTTTTTAAAACCATATTTGACTCGTAAATATTAAATAATAACATTTACGA
24851024 ACTTACTCATCAAATTTGGTGGTCCCGAAACCACTATTTTCGACACCACTGAAAGACAGGCTATT
391 ACTTACTCATCAAATTTGGTGGTCCCGAAACCACTATTTTCGACACCACTGAAAGACAGGCTATT
24851089 ACAATTTTCCAATTAAATAAATTTCTCAACCCAATTCTAATTCTATT-AAATCA
456 ACAATTTTCCAATTAAATAAATTTCTCAACCCAATTCTAATTCTATTAAAATCA
24851142 CCCAAAACCATCCACTAAATTCTTAAATTGTATAATTACCATTAAAGTCCCTTTTATTTTATTAA
1 CCCAAAACCATCCACTAAATTCTTAAATTGTATAATTACCATTAAAGTCCCTTTTATTTTATTAA
24851207 ATAAACCATTTAATCACTCAAATTAAATAATGACTAAATTTTACATCTTTTACAATTTACCCCTT
66 ATAAACCATTTAATCACTCAAATTAAATAATGACTAAATTTTACATCTTTTACAATTTACCCCTT
24851272 TTTAATTAATTAACTATCGAAACATTAAAATTTTTCAATGAAACTTTGATACCACCTTAATGACA
131 TTTAATTAATTAACTATCGAAACATTAAAATTTTTCAATGAAACTTTGATACCACCTTAATGACA
24851337 CTCCGCAAGTATTTATAAAAATATTTATGATTTGGTTTATAGAAACGAGGTCCCGATACCTCATT
196 CTCCGCAAGTATTTATAAAAATATTTATGATTTGGTTTATAGAAACGAGGTCCCGATACCTCATT
24851402 TTCTAAAGCCACTTGACCTTAGAGTCTTACCACTTGAACTTAATAAATCGTTATAAAACATAAAT
261 TTCTAAAGCCACTTGACCTTAGAGTCTTACCACTTGAACTTAATAAATCGTTATAAAACATAAAT
24851467 TACCAAATTAAAAACCTTTTTAAAACCATATTTGACTCGTAAATATTAAATAATAACATTTACGA
326 TACCAAATTAAAAACCTTTTTAAAACCATATTTGACTCGTAAATATTAAATAATAACATTTACGA
24851532 ACTTACTCATCAAATTTGGTGGTCCCGAAACCACTATTTTCGACACCACTGAAAGACAGGCTATT
391 ACTTACTCATCAAATTTGGTGGTCCCGAAACCACTATTTTCGACACCACTGAAAGACAGGCTATT
24851597 ACAATTTTCCAATTAAATAAATTTCTCAACCCAATTCTAATTCTATTAAAATCA
456 ACAATTTTCCAATTAAATAAATTTCTCAACCCAATTCTAATTCTATTAAAATCA
24851651 CCCAAAACCATCCACTAAATTCTTAAATTGTATAATTACCATTAAAGTCCCTTTTATTTTATTAA
1 CCCAAAACCATCCACTAAATTCTTAAATTGTATAATTACCATTAAAGTCCCTTTTATTTTATTAA
24851716 ATAAACCATTTAATCACTCAAATTAAATAATGACTAAATTTTACATCTTTTACAATTTACCCCTT
66 ATAAACCATTTAATCACTCAAATTAAATAATGACTAAATTTTACATCTTTTACAATTTACCCCTT
24851781 TTTAATTAATTAACTATCGAAACATTAAAATTTTTCAATGAAACTTTGATACCACCTTAATGACA
131 TTTAATTAATTAACTATCGAAACATTAAAATTTTTCAATGAAACTTTGATACCACCTTAATGACA
24851846 CTCCGCAAGTATTTATAAAAATATTTATGATTTGGTTTATAGAAACGAGGTCCCGATACCTCATT
196 CTCCGCAAGTATTTATAAAAATATTTATGATTTGGTTTATAGAAACGAGGTCCCGATACCTCATT
24851911 TTCTAAAGCCACTTGACCTTAGAGTCTTACCACTTGAACTTAATAAATCGTTATAAAACATAAAT
261 TTCTAAAGCCACTTGACCTTAGAGTCTTACCACTTGAACTTAATAAATCGTTATAAAACATAAAT
*
24851976 TACCAAATTAAAAACCTTTTTAAAACCATATTTGACTTGTAAATATTAAATAATAACATTTACGA
326 TACCAAATTAAAAACCTTTTTAAAACCATATTTGACTCGTAAATATTAAATAATAACATTTACGA
* * *
24852041 ACTTACTCGTCAGATTTGGTGGTCCCGAAACCACTATTTTCGACACTACTGAAAGACAGGCTATT
391 ACTTACTCATCAAATTTGGTGGTCCCGAAACCACTATTTTCGACACCACTGAAAGACAGGCTATT
24852106 ACAATTTTCCAATTAAATAAATTTCTCAACCCAATTCTAATTCTATTAAAATCA
456 ACAATTTTCCAATTAAATAAATTTCTCAACCCAATTCTAATTCTATTAAAATCA
24852160 CCCAAAACCATCCACTAAATTCTTAAATTGTATAATTACCATTAAAGTCCCTTTTATTTTATTAA
1 CCCAAAACCATCCACTAAATTCTTAAATTGTATAATTACCATTAAAGTCCCTTTTATTTTATTAA
24852225 ATAAACCATTTAATCACTCAAATTAAATAATGACTAAATTTTACATCTTTTACAATTTACCCCTT
66 ATAAACCATTTAATCACTCAAATTAAATAATGACTAAATTTTACATCTTTTACAATTTACCCCTT
24852290 TTTAATTAATTAACTATCGAAACATTAAAATTTTTCAAT
131 TTTAATTAATTAACTATCGAAACATTAAAATTTTTCAAT
24852329 TAATTAATTA
Statistics
Matches: 1181, Mismatches: 5, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
508 501 0.42
509 680 0.58
ACGTcount: A:0.39, C:0.19, G:0.07, T:0.36
Consensus pattern (509 bp):
CCCAAAACCATCCACTAAATTCTTAAATTGTATAATTACCATTAAAGTCCCTTTTATTTTATTAA
ATAAACCATTTAATCACTCAAATTAAATAATGACTAAATTTTACATCTTTTACAATTTACCCCTT
TTTAATTAATTAACTATCGAAACATTAAAATTTTTCAATGAAACTTTGATACCACCTTAATGACA
CTCCGCAAGTATTTATAAAAATATTTATGATTTGGTTTATAGAAACGAGGTCCCGATACCTCATT
TTCTAAAGCCACTTGACCTTAGAGTCTTACCACTTGAACTTAATAAATCGTTATAAAACATAAAT
TACCAAATTAAAAACCTTTTTAAAACCATATTTGACTCGTAAATATTAAATAATAACATTTACGA
ACTTACTCATCAAATTTGGTGGTCCCGAAACCACTATTTTCGACACCACTGAAAGACAGGCTATT
ACAATTTTCCAATTAAATAAATTTCTCAACCCAATTCTAATTCTATTAAAATCA
Found at i:24854276 original size:25 final size:25
Alignment explanation
Indices: 24854244--24854304 Score: 81
Period size: 25 Copynumber: 2.5 Consensus size: 25
24854234 ACATTTCGGA
*
24854244 TAAA-CAAAATGGGGAGTTTCAGTT
1 TAAATCAAAATGAGGAGTTTCAGTT
* *
24854268 TCAATCAAAACGAGGAGTTTCAGTT
1 TAAATCAAAATGAGGAGTTTCAGTT
24854293 TAAAT-AAAATGA
1 TAAATCAAAATGA
24854305 TGCGTTTAGC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
24 9 0.29
25 22 0.71
ACGTcount: A:0.43, C:0.10, G:0.20, T:0.28
Consensus pattern (25 bp):
TAAATCAAAATGAGGAGTTTCAGTT
Found at i:24854441 original size:16 final size:17
Alignment explanation
Indices: 24854420--24854451 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
24854410 GAATACACAA
24854420 GATTTTTCTT-TTCTCT
1 GATTTTTCTTCTTCTCT
24854436 GATTTTTCTTCTTCTC
1 GATTTTTCTTCTTCTC
24854452 GTCTACATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.06, C:0.22, G:0.06, T:0.66
Consensus pattern (17 bp):
GATTTTTCTTCTTCTCT
Found at i:24858592 original size:22 final size:23
Alignment explanation
Indices: 24858557--24858599 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
24858547 ATTTTAATTT
*
24858557 AAAATTATTGAATAAAAAATAAA
1 AAAATAATTGAATAAAAAATAAA
*
24858580 AAAATAATT-AATAAAGAATA
1 AAAATAATTGAATAAAAAATA
24858600 TTTTTATATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.26
Consensus pattern (23 bp):
AAAATAATTGAATAAAAAATAAA
Found at i:24862158 original size:21 final size:21
Alignment explanation
Indices: 24862132--24862186 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
24862122 AACAGCGGTG
*
24862132 GCGGTGAGATTAGTTACTATA
1 GCGGTGAGATTAGGTACTATA
* *
24862153 GCGGTGAGATTGGGTACTGTA
1 GCGGTGAGATTAGGTACTATA
24862174 GCGGTGAGATTAG
1 GCGGTGAGATTAG
24862187 AAACAATGGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.24, C:0.09, G:0.38, T:0.29
Consensus pattern (21 bp):
GCGGTGAGATTAGGTACTATA
Found at i:24862500 original size:22 final size:22
Alignment explanation
Indices: 24862449--24862500 Score: 52
Period size: 22 Copynumber: 2.3 Consensus size: 22
24862439 TTTTATAGTT
*
24862449 ATAATTAAATATTTTTTATAACA
1 ATAA-TAAATATTATTTATAACA
* *
24862472 ATGATAAATATTATTT-TCACAA
1 ATAATAAATATTATTTATAAC-A
24862494 ATAATAA
1 ATAATAA
24862501 CATTATACTT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
21 3 0.12
22 18 0.75
23 3 0.12
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (22 bp):
ATAATAAATATTATTTATAACA
Found at i:24866490 original size:15 final size:15
Alignment explanation
Indices: 24866470--24866501 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
24866460 TGTAAGTTTC
24866470 TTAGAAATAAAATGA
1 TTAGAAATAAAATGA
*
24866485 TTAGAAATAAGATGA
1 TTAGAAATAAAATGA
24866500 TT
1 TT
24866502 GGGGAAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.16, T:0.31
Consensus pattern (15 bp):
TTAGAAATAAAATGA
Found at i:24866900 original size:15 final size:15
Alignment explanation
Indices: 24866880--24866910 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
24866870 AATAAGATGA
24866880 TTGGGGAAATTTGGG
1 TTGGGGAAATTTGGG
24866895 TTGGGGAAATTTGGG
1 TTGGGGAAATTTGGG
24866910 T
1 T
24866911 CAAAATTGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.00, G:0.45, T:0.35
Consensus pattern (15 bp):
TTGGGGAAATTTGGG
Found at i:24867281 original size:15 final size:15
Alignment explanation
Indices: 24867261--24867292 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
24867251 TGTAAGTTTC
24867261 TTAGAAATAAAATGA
1 TTAGAAATAAAATGA
*
24867276 TTAGAAATAAGATGA
1 TTAGAAATAAAATGA
24867291 TT
1 TT
24867293 GGGGAAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.16, T:0.31
Consensus pattern (15 bp):
TTAGAAATAAAATGA
Found at i:24867430 original size:395 final size:396
Alignment explanation
Indices: 24866448--24867643 Score: 2299
Period size: 396 Copynumber: 3.0 Consensus size: 396
24866438 AGTTATAATT
24866448 ATTTATTGCATTTGTAAGTTTCTTAGAAATAAAATGATTAGAAATAAGATGATTGGGGAAATTTG
1 ATTTATTGCATTTGTAAGTTTCTTAGAAATAAAATGATTAGAAATAAGATGATTGGGGAAATTTG
24866513 GGTCAAAATTGAGGAAAAAGCAGTGAAGATAATCCTGGGAAGTGAATGGGAAACTTCCCAATCCA
66 GGTCAAAATTGAGGAAAAAGCAGTGAAGATAATCCTGGGAAGTGAATGGGAAACTTCCCAATCCA
24866578 GGTGTTGAATGCAACAGTTTTTTCCTTTGAAATGAACGACCGAAAGAGTGAGCTC-TTTTTTTTT
131 GGTGTTGAATGCAACAGTTTTTTCCTTTGAAATGAACGACCGAAAGAGTGAGCTCTTTTTTTTTT
24866642 CCTTCTTGTTGTTGATTTAATTTGTGCTTTCTTTGCTTCTTTTCATTTGGTTAACGAATCTCTGA
196 CCTTCTTGTTGTTGATTTAATTTGTGCTTTCTTTGCTTCTTTTCATTTGGTTAACGAATCTCTGA
24866707 ATCTTTTCATTTGATTTAATTTGTGCTTTATTCGCTTTTTTTCATTTGGTTTGATTTATCCTCTC
261 ATCTTTTCATTTGATTTAATTTGTGCTTTATTCGCTTTTTTTCATTTGGTTTGATTTATCCTCTC
24866772 CCTCTCTCTTTGTCTCACACATATGCACATCAACAGACGCAATTGTGTGTTCATCTCTTGTTTTC
326 CCTCTCTCTTTGTCTCACACATATGCACATCAACAGACGCAATTGTGTGTTCATCTCTTGTTTTC
24866837 ATTATA
391 ATTATA
* * ** *
24866843 ATTTATTGCATTTGTAAGTTTCTTAGAAATAAGATGATTGGGGAAATTTG--GGTTGGGGAAATT
1 ATTTATTGCATTTGTAAGTTTCTTAGAAATAAAATGATT--AGAAATAAGATGATTGGGGAAATT
24866906 TGGGTCAAAATTGAGGAAAAAGCAGTGAAGATAATCCTGGGAAGTGAATGGGAAACTTCCCAATC
64 TGGGTCAAAATTGAGGAAAAAGCAGTGAAGATAATCCTGGGAAGTGAATGGGAAACTTCCCAATC
24866971 CAGGTGTTGAATGCAACAGTTTTTTCCTTTGAAATGAACGACCGAAAGAGTGAGCTCTTTTTTTT
129 CAGGTGTTGAATGCAACAGTTTTTTCCTTTGAAATGAACGACCGAAAGAGTGAGCTCTTTTTTTT
24867036 TTCCTTCTTGTTGTTGATTTAATTTGTGCTTTCTTTGCTTCTTTTCATTTGGTTAACGAATCTCT
194 TTCCTTCTTGTTGTTGATTTAATTTGTGCTTTCTTTGCTTCTTTTCATTTGGTTAACGAATCTCT
24867101 GAATCTTTTCATTTGATTTAATTTGTGCTTTATTCGCTTTTTTTCATTTGGTTTGATTTATCCTC
259 GAATCTTTTCATTTGATTTAATTTGTGCTTTATTCGCTTTTTTTCATTTGGTTTGATTTATCCTC
24867166 TCCCTCTCTCTTTGTCTCACACATATGCACATCAACAGACGCAATTGTGTGTTCATCTCTTGTTT
324 TCCCTCTCTCTTTGTCTCACACATATGCACATCAACAGACGCAATTGTGTGTTCATCTCTTGTTT
24867231 TCATTATA
389 TCATTATA
24867239 ATTTATTGCATTTGTAAGTTTCTTAGAAATAAAATGATTAGAAATAAGATGATTGGGGAAATTTG
1 ATTTATTGCATTTGTAAGTTTCTTAGAAATAAAATGATTAGAAATAAGATGATTGGGGAAATTTG
24867304 GGTCAAAATTGAGGAAAAAGCAGTGAAGATAATCCTGGGAAGTGAATGGGAAACTTCCCAATCCA
66 GGTCAAAATTGAGGAAAAAGCAGTGAAGATAATCCTGGGAAGTGAATGGGAAACTTCCCAATCCA
24867369 GGTGTTGAATGCAACAGTTTTTTCCTTTGAAATGAACGACCGAAAGAGTGAGCTCTTTTTTTTTT
131 GGTGTTGAATGCAACAGTTTTTTCCTTTGAAATGAACGACCGAAAGAGTGAGCTCTTTTTTTTTT
24867434 CCTTCTTGTTGTTGATTTAATTTGTGCTTTCTTTGCTTCTTTTCATTTGGTTAACGAATCTCTGA
196 CCTTCTTGTTGTTGATTTAATTTGTGCTTTCTTTGCTTCTTTTCATTTGGTTAACGAATCTCTGA
24867499 ATCTTTTCATTTGATTTAATTTGTGCTTTATTCGCTTTTTTTCATTTGGTTTGATTTATCCTCTC
261 ATCTTTTCATTTGATTTAATTTGTGCTTTATTCGCTTTTTTTCATTTGGTTTGATTTATCCTCTC
*
24867564 CCTCTCTCTTTGTCTCACACATATGCACATCAACAGACGCAATTGTGTGTTCATCTCTTGTTCTC
326 CCTCTCTCTTTGTCTCACACATATGCACATCAACAGACGCAATTGTGTGTTCATCTCTTGTTTTC
24867629 ATTATA
391 ATTATA
24867635 ATTTATTGC
1 ATTTATTGC
24867644 TATTGAATGC
Statistics
Matches: 785, Mismatches: 11, Indels: 9
0.98 0.01 0.01
Matches are distributed among these distances:
394 6 0.01
395 172 0.22
396 601 0.77
397 6 0.01
ACGTcount: A:0.25, C:0.15, G:0.18, T:0.42
Consensus pattern (396 bp):
ATTTATTGCATTTGTAAGTTTCTTAGAAATAAAATGATTAGAAATAAGATGATTGGGGAAATTTG
GGTCAAAATTGAGGAAAAAGCAGTGAAGATAATCCTGGGAAGTGAATGGGAAACTTCCCAATCCA
GGTGTTGAATGCAACAGTTTTTTCCTTTGAAATGAACGACCGAAAGAGTGAGCTCTTTTTTTTTT
CCTTCTTGTTGTTGATTTAATTTGTGCTTTCTTTGCTTCTTTTCATTTGGTTAACGAATCTCTGA
ATCTTTTCATTTGATTTAATTTGTGCTTTATTCGCTTTTTTTCATTTGGTTTGATTTATCCTCTC
CCTCTCTCTTTGTCTCACACATATGCACATCAACAGACGCAATTGTGTGTTCATCTCTTGTTTTC
ATTATA
Found at i:24869968 original size:21 final size:21
Alignment explanation
Indices: 24869942--24869985 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
24869932 AAATAGAGCT
24869942 TCTTTGAGTCTGCTGTGAGTG
1 TCTTTGAGTCTGCTGTGAGTG
24869963 TCTTTGAGTCTGCTGTGAGTG
1 TCTTTGAGTCTGCTGTGAGTG
24869984 TC
1 TC
24869986 AATTGAAGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.09, C:0.16, G:0.32, T:0.43
Consensus pattern (21 bp):
TCTTTGAGTCTGCTGTGAGTG
Found at i:24878434 original size:22 final size:23
Alignment explanation
Indices: 24878394--24878436 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
24878384 AATTCTAGGA
24878394 AACAAAGATCAGAATCAAATCCC
1 AACAAAGATCAGAATCAAATCCC
*
24878417 AACAAAG-TCATAATCAAATC
1 AACAAAGATCAGAATCAAATC
24878437 ACAATCCGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.53, C:0.23, G:0.07, T:0.16
Consensus pattern (23 bp):
AACAAAGATCAGAATCAAATCCC
Found at i:24880375 original size:21 final size:19
Alignment explanation
Indices: 24880328--24880375 Score: 51
Period size: 21 Copynumber: 2.4 Consensus size: 19
24880318 TTACGTGTCC
24880328 ATGTTATATATTATAAAAA
1 ATGTTATATATTATAAAAA
** *
24880347 ATAATATACTTATTTTAAAAA
1 ATGTTATA--TATTATAAAAA
24880368 ATGTTATA
1 ATGTTATA
24880376 ATTTTTGCCT
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
19 6 0.27
21 16 0.73
ACGTcount: A:0.50, C:0.02, G:0.04, T:0.44
Consensus pattern (19 bp):
ATGTTATATATTATAAAAA
Found at i:24885868 original size:6 final size:6
Alignment explanation
Indices: 24885859--24885897 Score: 53
Period size: 6 Copynumber: 6.5 Consensus size: 6
24885849 TTCAAATTTA
*
24885859 ATTTCG ATTTTG ATTTTG ATTTCT- ATTTTG ATTTTG ATT
1 ATTTTG ATTTTG ATTTTG ATTT-TG ATTTTG ATTTTG ATT
24885898 ACAATTTTGA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
5 1 0.03
6 28 0.93
7 1 0.03
ACGTcount: A:0.18, C:0.05, G:0.13, T:0.64
Consensus pattern (6 bp):
ATTTTG
Found at i:24885874 original size:12 final size:12
Alignment explanation
Indices: 24885859--24886004 Score: 55
Period size: 12 Copynumber: 11.8 Consensus size: 12
24885849 TTCAAATTTA
24885859 ATTTCGATTTTG
1 ATTTCGATTTTG
*
24885871 ATTTTGATTTCT-
1 ATTTCGATTT-TG
*
24885883 ATTTTGATTTTG
1 ATTTCGATTTTG
* *
24885895 ATTACAATTTTG
1 ATTTCGATTTTG
** *
24885907 AAACTCACTGATTCTG
1 --A-TTTC-GATTTTG
*
24885923 ATTTAGATTTTG
1 ATTTCGATTTTG
* *
24885935 ATTTCAATTTCG
1 ATTTCGATTTTG
* **
24885947 ATTTCGATCTCA
1 ATTTCGATTTTG
* *
24885959 ATTTAGGA-TTAG
1 ATTT-CGATTTTG
24885971 AATTT-GATTTTG
1 -ATTTCGATTTTG
*
24885983 ATTTCGATTTAG
1 ATTTCGATTTTG
*
24885995 ATTTAGATTT
1 ATTTCGATTT
24886005 AGGGTTATTT
Statistics
Matches: 100, Mismatches: 24, Indels: 20
0.69 0.17 0.14
Matches are distributed among these distances:
11 7 0.07
12 75 0.75
13 8 0.08
14 2 0.02
15 3 0.03
16 5 0.05
ACGTcount: A:0.25, C:0.09, G:0.14, T:0.52
Consensus pattern (12 bp):
ATTTCGATTTTG
Found at i:24885880 original size:18 final size:18
Alignment explanation
Indices: 24885859--24885907 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
24885849 TTCAAATTTA
*
24885859 ATTTCGATTTTGATTTTG
1 ATTTCAATTTTGATTTTG
*
24885877 ATTTCTATTTTGATTTTG
1 ATTTCAATTTTGATTTTG
*
24885895 ATTACAATTTTGA
1 ATTTCAATTTTGA
24885908 AACTCACTGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.22, C:0.06, G:0.12, T:0.59
Consensus pattern (18 bp):
ATTTCAATTTTGATTTTG
Found at i:24885944 original size:18 final size:18
Alignment explanation
Indices: 24885923--24886004 Score: 59
Period size: 18 Copynumber: 4.9 Consensus size: 18
24885913 ACTGATTCTG
24885923 ATTTAGATTTTGATTTCA
1 ATTTAGATTTTGATTTCA
* * *
24885941 ATTTCGATTTCGATCTCA
1 ATTTAGATTTTGATTTCA
**
24885959 ATTTAG-----GATTAGA
1 ATTTAGATTTTGATTTCA
*
24885972 ATTT-GATTTTGATTTCG
1 ATTTAGATTTTGATTTCA
*
24885989 ATTTAGATTTAGATTT
1 ATTTAGATTTTGATTT
24886005 AGGGTTATTT
Statistics
Matches: 47, Mismatches: 11, Indels: 12
0.67 0.16 0.17
Matches are distributed among these distances:
12 1 0.02
13 8 0.17
17 8 0.17
18 30 0.64
ACGTcount: A:0.27, C:0.07, G:0.15, T:0.51
Consensus pattern (18 bp):
ATTTAGATTTTGATTTCA
Found at i:24885977 original size:42 final size:42
Alignment explanation
Indices: 24885925--24886026 Score: 120
Period size: 42 Copynumber: 2.5 Consensus size: 42
24885915 TGATTCTGAT
*
24885925 TTAGATTTTGATTTCAATTTCGATTTCGATCTCA-ATTTAGGA
1 TTAGATTTTGATTTCAATTTCGATTTAGAT-TCAGATTTAGGA
* ** * *
24885967 TTAGAATTTGATTTTGATTTCGATTTAGATTTAGATTTAGGG
1 TTAGATTTTGATTTCAATTTCGATTTAGATTCAGATTTAGGA
24886009 TT--ATTTTGATTTCAATTT
1 TTAGATTTTGATTTCAATTT
24886027 TATTTGTTAT
Statistics
Matches: 50, Mismatches: 9, Indels: 4
0.79 0.14 0.06
Matches are distributed among these distances:
40 13 0.26
41 2 0.04
42 35 0.70
ACGTcount: A:0.25, C:0.07, G:0.16, T:0.52
Consensus pattern (42 bp):
TTAGATTTTGATTTCAATTTCGATTTAGATTCAGATTTAGGA
Found at i:24886020 original size:6 final size:6
Alignment explanation
Indices: 24885922--24886006 Score: 52
Period size: 6 Copynumber: 14.2 Consensus size: 6
24885912 CACTGATTCT
* * * *
24885922 GATTTA GATTTT GATTTCA -ATTTC GATTTC GATCTCA -ATTTA GGA-TTA
1 GATTTA GATTTA GATTT-A GATTTA GATTTA GAT-TTA GATTTA -GATTTA
* *
24885970 GAATTT- GATTTT GATTTC GATTTA GATTTA GATTTA G
1 G-ATTTA GATTTA GATTTA GATTTA GATTTA GATTTA G
24886007 GGTTATTTTG
Statistics
Matches: 63, Mismatches: 8, Indels: 16
0.72 0.09 0.18
Matches are distributed among these distances:
5 7 0.11
6 52 0.83
7 4 0.06
ACGTcount: A:0.27, C:0.07, G:0.16, T:0.49
Consensus pattern (6 bp):
GATTTA
Found at i:24886210 original size:34 final size:34
Alignment explanation
Indices: 24886172--24886276 Score: 98
Period size: 34 Copynumber: 3.2 Consensus size: 34
24886162 ATTGTATGAA
24886172 TGCCATTATCAAACTGATCTTTATTGTGTATATC
1 TGCCATTATCAAACTGATCTTTATTGTGTATATC
* * *
24886206 TGCCATTGT----TTGTATCTATTA-T-TGTATGA-A
1 TGCCATTATCAAACTG-ATCT-TTATTGTGTAT-ATC
*
24886236 TGCCATTATCAAACTGATCTTTATTGTATATATC
1 TGCCATTATCAAACTGATCTTTATTGTGTATATC
24886270 TGCCATT
1 TGCCATT
24886277 GTATGAATGT
Statistics
Matches: 54, Mismatches: 7, Indels: 20
0.67 0.09 0.25
Matches are distributed among these distances:
30 15 0.28
31 6 0.11
32 6 0.11
33 6 0.11
34 21 0.39
ACGTcount: A:0.26, C:0.16, G:0.12, T:0.46
Consensus pattern (34 bp):
TGCCATTATCAAACTGATCTTTATTGTGTATATC
Found at i:24886260 original size:32 final size:32
Alignment explanation
Indices: 24886162--24886264 Score: 99
Period size: 30 Copynumber: 3.2 Consensus size: 32
24886152 TGTATCTGCC
24886162 ATTGTATGAATGCCATTATCAAACTGATCTTT
1 ATTGTATGAATGCCATTATCAAACTGATCTTT
* * *
24886194 ATTGTGTAT-ATCTGCCATTGT----TTGTATCTATT
1 A-T-TGTATGA-ATGCCATTATCAAACTG-ATCT-TT
24886226 ATTGTATGAATGCCATTATCAAACTGATCTTT
1 ATTGTATGAATGCCATTATCAAACTGATCTTT
24886258 ATTGTAT
1 ATTGTAT
24886265 ATATCTGCCA
Statistics
Matches: 55, Mismatches: 6, Indels: 20
0.68 0.07 0.25
Matches are distributed among these distances:
30 15 0.27
31 6 0.11
32 13 0.24
33 6 0.11
34 15 0.27
ACGTcount: A:0.27, C:0.14, G:0.14, T:0.46
Consensus pattern (32 bp):
ATTGTATGAATGCCATTATCAAACTGATCTTT
Found at i:24886270 original size:48 final size:48
Alignment explanation
Indices: 24886226--24886326 Score: 157
Period size: 48 Copynumber: 2.1 Consensus size: 48
24886216 TGTATCTATT
*
24886226 ATTGTATGAATGCCATTATCAAACTGATCTTTATTGTATATATCTGCC
1 ATTGTATGAATGCCATTATCAAACTGATCTTTATTGTATATATCTACC
* * * *
24886274 ATTGTATGAATGTCATTATCAAATTGATCTTTATTGTGTATATCTGCC
1 ATTGTATGAATGCCATTATCAAACTGATCTTTATTGTATATATCTACC
24886322 ATTGT
1 ATTGT
24886327 TTGTATCTGC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.45
Consensus pattern (48 bp):
ATTGTATGAATGCCATTATCAAACTGATCTTTATTGTATATATCTACC
Found at i:24886342 original size:112 final size:112
Alignment explanation
Indices: 24886154--24886390 Score: 384
Period size: 112 Copynumber: 2.1 Consensus size: 112
24886144 TTATTGGTTG
24886154 TATCTGCCATTGTATGAATGCCATTATCAAACTGATCTTTATTGTGTATATCTGCCATTGTTTGT
1 TATCTGCCATTGTATGAATGCCATTATCAAACTGATCTTTATTGTGTATATCTGCCATTGTTTGT
** *
24886219 ATCTATTATTGTATGAATGCCATTATCAAACTGATCTTTATTGTATA
66 ATCTACCATTGTATGAATGCCATTATCAAACTAATCTTTATTGTATA
* *
24886266 TATCTGCCATTGTATGAATGTCATTATCAAATTGATCTTTATTGTGTATATCTGCCATTGTTTGT
1 TATCTGCCATTGTATGAATGCCATTATCAAACTGATCTTTATTGTGTATATCTGCCATTGTTTGT
* * * * *
24886331 ATCTGCCATTGTATGAATGTCATTATCAAATTAATGTTTATTGTGTA
66 ATCTACCATTGTATGAATGCCATTATCAAACTAATCTTTATTGTATA
24886378 TATCTGCCATTGT
1 TATCTGCCATTGT
24886391 TTGTATCTGC
Statistics
Matches: 115, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
112 115 1.00
ACGTcount: A:0.26, C:0.14, G:0.14, T:0.46
Consensus pattern (112 bp):
TATCTGCCATTGTATGAATGCCATTATCAAACTGATCTTTATTGTGTATATCTGCCATTGTTTGT
ATCTACCATTGTATGAATGCCATTATCAAACTAATCTTTATTGTATA
Found at i:24886448 original size:62 final size:62
Alignment explanation
Indices: 24886287--24886521 Score: 335
Period size: 62 Copynumber: 3.8 Consensus size: 62
24886277 GTATGAATGT
* ** * *
24886287 CATTATCAAATTGATCTTTATTGTGTATATCTGCCATTGTTTGTATCTGCCATTGTATGAATGT
1 CATTATCAAATTGATGTTTATTGTGTATATCTGCCATTGTTTGTATCTGCCATTAAAT-TAT-A
*
24886351 CATTATCAAATTAATGTTTATTGTGTATATCTGCCATTGTTTGTATCTGCCATTAAATTATA
1 CATTATCAAATTGATGTTTATTGTGTATATCTGCCATTGTTTGTATCTGCCATTAAATTATA
* *
24886413 CATTATTAAACTGATGTTTATTGTGTATATCTGCCATTGTTTGTATCTGCCATTAAATTATA
1 CATTATCAAATTGATGTTTATTGTGTATATCTGCCATTGTTTGTATCTGCCATTAAATTATA
** * * *
24886475 CATTATTGAATTGATGTTTATTGTGTATATTTGTCATTATTTGTATC
1 CATTATCAAATTGATGTTTATTGTGTATATCTGCCATTGTTTGTATC
24886522 CAAGCTCCTA
Statistics
Matches: 157, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
62 101 0.64
63 2 0.01
64 54 0.34
ACGTcount: A:0.26, C:0.12, G:0.14, T:0.49
Consensus pattern (62 bp):
CATTATCAAATTGATGTTTATTGTGTATATCTGCCATTGTTTGTATCTGCCATTAAATTATA
Found at i:24886454 original size:126 final size:124
Alignment explanation
Indices: 24886287--24886521 Score: 335
Period size: 126 Copynumber: 1.9 Consensus size: 124
24886277 GTATGAATGT
* ** *
24886287 CATTATCAAATTGATCTTTATTGTGTATATCTGCCATTGTTTGTATCTGCCATTGTATGAATGTC
1 CATTATCAAACTGATCTTTATTGTGTATATCTGCCATTGTTTGTATCTGCCATTAAAT-AAT-AC
*
24886352 ATTATCAAATTAATGTTTATTGTGTATATCTGCCATTGTTTGTATCTGCCATTAAATTATA
64 ATTATCAAATTAATGTTTATTGTGTATATCTGCCATTATTTGTATCTGCCATTAAATTATA
* * *
24886413 CATTATTAAACTGATGTTTATTGTGTATATCTGCCATTGTTTGTATCTGCCATTAAATTATACAT
1 CATTATCAAACTGATCTTTATTGTGTATATCTGCCATTGTTTGTATCTGCCATTAAATAATACAT
** * * *
24886478 TATTGAATTGATGTTTATTGTGTATATTTGTCATTATTTGTATC
66 TATCAAATTAATGTTTATTGTGTATATCTGCCATTATTTGTATC
24886522 CAAGCTCCTA
Statistics
Matches: 96, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
124 41 0.43
125 2 0.02
126 53 0.55
ACGTcount: A:0.26, C:0.12, G:0.14, T:0.49
Consensus pattern (124 bp):
CATTATCAAACTGATCTTTATTGTGTATATCTGCCATTGTTTGTATCTGCCATTAAATAATACAT
TATCAAATTAATGTTTATTGTGTATATCTGCCATTATTTGTATCTGCCATTAAATTATA
Found at i:24886826 original size:15 final size:16
Alignment explanation
Indices: 24886806--24886839 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
24886796 TGAAGAAAAC
24886806 GTGTCTGGTAGTGA-A
1 GTGTCTGGTAGTGATA
24886821 GTGTCTGGTAGTGATA
1 GTGTCTGGTAGTGATA
24886837 GTG
1 GTG
24886840 ATGCATCTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.18, C:0.06, G:0.41, T:0.35
Consensus pattern (16 bp):
GTGTCTGGTAGTGATA
Found at i:24888578 original size:43 final size:43
Alignment explanation
Indices: 24888484--24888661 Score: 238
Period size: 43 Copynumber: 4.2 Consensus size: 43
24888474 TTGCTGATCA
* * *
24888484 CATGCAATGACTGTTGGAAAGTTATTAACT-TTTTTTAATATG
1 CATGCAATGATTGTTGGAAAGTTGTTGACTATTTTTTAATATG
* *
24888526 TATGCAATGATTATTGGAAAGTTGTTGACTATTTTTTAATATG
1 CATGCAATGATTGTTGGAAAGTTGTTGACTATTTTTTAATATG
* *
24888569 CATGTAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
1 CATGCAATGATTGTTGGAAAGTTGTTGACTATTTTTTAATATG
* * *
24888612 CATACAATGATTGTTGG--TG-TGTTGCCTATTTTTTAATATG
1 CATGCAATGATTGTTGGAAAGTTGTTGACTATTTTTTAATATG
24888652 CATGCAATGA
1 CATGCAATGA
24888662 GTTTTTTTTA
Statistics
Matches: 121, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
40 29 0.24
41 1 0.01
42 25 0.21
43 66 0.55
ACGTcount: A:0.29, C:0.08, G:0.19, T:0.44
Consensus pattern (43 bp):
CATGCAATGATTGTTGGAAAGTTGTTGACTATTTTTTAATATG
Found at i:24888651 original size:83 final size:84
Alignment explanation
Indices: 24888484--24888661 Score: 234
Period size: 83 Copynumber: 2.1 Consensus size: 84
24888474 TTGCTGATCA
* * *
24888484 CATGCAATGACTGTTGGAAAGTTATTAACTTTTTTTAATATGTATGCAATGATTATTGGAAAGTT
1 CATGCAATGACTGTTGGAAAGCTATTAACTTTTTTTAATATGCATACAATGATTATTGG-AAGTT
24888549 GTTGACTATTTTTTAATATG
65 GTTGACTATTTTTTAATATG
* * * * * *
24888569 CATGTAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATGCATACAATGATTGTTGG-TG-T
1 CATGCAATGACTGTTGGAAAGCTATTAACT-TTTTTTAATATGCATACAATGATTATTGGAAGTT
*
24888632 GTTGCCTATTTTTTAATATG
65 GTTGACTATTTTTTAATATG
24888652 CATGCAATGA
1 CATGCAATGA
24888662 GTTTTTTTTA
Statistics
Matches: 81, Mismatches: 11, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
83 29 0.36
84 1 0.01
85 25 0.31
86 26 0.32
ACGTcount: A:0.29, C:0.08, G:0.19, T:0.44
Consensus pattern (84 bp):
CATGCAATGACTGTTGGAAAGCTATTAACTTTTTTTAATATGCATACAATGATTATTGGAAGTTG
TTGACTATTTTTTAATATG
Found at i:24889397 original size:21 final size:21
Alignment explanation
Indices: 24889371--24889422 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
24889361 CAACAAGGTG
24889371 CCCCAACTCA-ATTACCTACTA
1 CCCCAACTCAGA-TACCTACTA
*
24889392 CCCCAACTCAGATACCTACTG
1 CCCCAACTCAGATACCTACTA
24889413 CCCCAACTCA
1 CCCCAACTCA
24889423 TCAAGAAGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
21 28 0.97
22 1 0.03
ACGTcount: A:0.31, C:0.46, G:0.04, T:0.19
Consensus pattern (21 bp):
CCCCAACTCAGATACCTACTA
Found at i:24889760 original size:40 final size:40
Alignment explanation
Indices: 24889685--24889764 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
24889675 TTTTGTAAAT
**
24889685 TTCCCTACAATTCACATCTGTTCAATTATGTTGAATTGTA
1 TTCCCTACAATTCACATCTGTTCAATTATAATGAATTGTA
*
24889725 TTCCCTACAATTCACATCTGTTCAATTGTAATGAATTGTA
1 TTCCCTACAATTCACATCTGTTCAATTATAATGAATTGTA
24889765 GGAAAATTTG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.29, C:0.20, G:0.10, T:0.41
Consensus pattern (40 bp):
TTCCCTACAATTCACATCTGTTCAATTATAATGAATTGTA
Found at i:24889951 original size:59 final size:59
Alignment explanation
Indices: 24889859--24889997 Score: 224
Period size: 59 Copynumber: 2.4 Consensus size: 59
24889849 TATTTGTTAT
* *
24889859 CCAACTATTAAGCAATTTGTATACCAACTGTTATCTTTTCTAACTAGCAGCCATGTATA
1 CCAACTGTTAAGCAATTTGTATACCAACTGTTATCTTTTCTAACCAGCAGCCATGTATA
* * *
24889918 CCAACTGTTAAGCAATTTGTATATCAATTGTTATCTTTTCTAACCAGTAGCCATGTATA
1 CCAACTGTTAAGCAATTTGTATACCAACTGTTATCTTTTCTAACCAGCAGCCATGTATA
*
24889977 CCAAGTGTTAAGCAATTTGTA
1 CCAACTGTTAAGCAATTTGTA
24889998 AACAACAACA
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
59 74 1.00
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.37
Consensus pattern (59 bp):
CCAACTGTTAAGCAATTTGTATACCAACTGTTATCTTTTCTAACCAGCAGCCATGTATA
Found at i:24897500 original size:37 final size:37
Alignment explanation
Indices: 24897439--24897517 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
24897429 TTATTACGAA
* * * *
24897439 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
*
24897476 GTCTTACCCAGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
24897513 GTCTT
1 GTCTT
24897518 TAGATCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
Found at i:24897698 original size:47 final size:47
Alignment explanation
Indices: 24897636--24898562 Score: 1725
Period size: 47 Copynumber: 19.7 Consensus size: 47
24897626 CCCTTCGGGA
* * * * * *
24897636 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24897683 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24897730 CTTATCACATATATATACACTTTCACATTCA--ACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24897777 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24897824 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24897871 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24897918 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24897965 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24898012 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24898059 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24898106 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24898153 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24898200 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24898247 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24898294 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24898341 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24898388 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24898435 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24898482 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24898529 CTTATCACATATATACA-TGTTCACATCCATCACA
1 CTTATCACATATATACACT-TTCACATTCATCACA
24898563 ATGAATCCTA
Statistics
Matches: 864, Mismatches: 11, Indels: 10
0.98 0.01 0.01
Matches are distributed among these distances:
45 21 0.02
46 1 0.00
47 821 0.95
49 21 0.02
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:24904376 original size:24 final size:23
Alignment explanation
Indices: 24904353--24904425 Score: 74
Period size: 24 Copynumber: 3.0 Consensus size: 23
24904343 CCGGATGCTC
24904353 CGAAGAGCTATTAACGGGAAGCT
1 CGAAGAGCTATTAACGGGAAGCT
* * *
24904376 CGCAAGAACCATATAATGGGAAGCT
1 CG-AAGAGCTAT-TAACGGGAAGCT
* *
24904401 CGAGAGAGCTAATAACGGGATGCT
1 CGA-AGAGCTATTAACGGGAAGCT
24904425 C
1 C
24904426 TTTCGAGCTA
Statistics
Matches: 39, Mismatches: 8, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
23 2 0.05
24 19 0.49
25 18 0.46
ACGTcount: A:0.36, C:0.19, G:0.29, T:0.16
Consensus pattern (23 bp):
CGAAGAGCTATTAACGGGAAGCT
Found at i:24911478 original size:31 final size:32
Alignment explanation
Indices: 24911443--24911520 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 32
24911433 GTTTGTCTCC
* *
24911443 CTGTAATGGAATAGGGCTATAATTG-ATAGAG
1 CTGTAATGGAATAGAGCTATAATTGAATAGAA
* *
24911474 CTGTAATTGAATAAAGCTATAATTGAATAGAA
1 CTGTAATGGAATAGAGCTATAATTGAATAGAA
24911506 CTGTAATGGAATAGA
1 CTGTAATGGAATAGA
24911521 ACTGTAATCA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
31 22 0.55
32 18 0.45
ACGTcount: A:0.41, C:0.06, G:0.23, T:0.29
Consensus pattern (32 bp):
CTGTAATGGAATAGAGCTATAATTGAATAGAA
Found at i:24911512 original size:16 final size:16
Alignment explanation
Indices: 24911443--24911528 Score: 86
Period size: 16 Copynumber: 5.4 Consensus size: 16
24911433 GTTTGTCTCC
* **
24911443 CTGTAATGGAATAGGG
1 CTGTAATTGAATAGAA
* *
24911459 CTATAATTG-ATAGAG
1 CTGTAATTGAATAGAA
24911474 CTGTAATTGAATA-AA
1 CTGTAATTGAATAGAA
*
24911489 GCTATAATTGAATAGAA
1 -CTGTAATTGAATAGAA
*
24911506 CTGTAATGGAATAGAA
1 CTGTAATTGAATAGAA
24911522 CTGTAAT
1 CTGTAAT
24911529 CAGTAATTCA
Statistics
Matches: 59, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
15 14 0.24
16 43 0.73
17 2 0.03
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.30
Consensus pattern (16 bp):
CTGTAATTGAATAGAA
Found at i:24915312 original size:80 final size:80
Alignment explanation
Indices: 24915207--24915392 Score: 227
Period size: 80 Copynumber: 2.3 Consensus size: 80
24915197 AGTAACTCAT
* * * *
24915207 ACAATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACGAATGCCTTCGGGGCTTAACCCG
1 ACAAAGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCCTTCGGAGCTTAACCCG
*
24915271 GA-ATTAGT-A-TCTCGC
65 GATA-TAGTCACT-TAGC
* **
24915286 ACAAAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAATGCCTTCGGATCTTAGTCCG
1 ACAAA-GCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAATGCCTTCGGAGCTTAACCCG
24915351 GATATAGTCACTTAGC
65 GATATAGTCACTTAGC
*
24915367 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTAACCCGGA
24915393 CAGCATTCAA
Statistics
Matches: 93, Mismatches: 9, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
79 8 0.09
80 74 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (80 bp):
ACAAAGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAATGCCTTCGGAGCTTAACCCGG
ATATAGTCACTTAGC
Found at i:24915352 original size:40 final size:40
Alignment explanation
Indices: 24915209--24915392 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
24915199 TAACTCATAC
* *
24915209 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* * *
24915249 AATGCCTTCGGGGCTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
24915289 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
** * * *
24915329 AATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
24915370 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
24915393 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:24923670 original size:11 final size:11
Alignment explanation
Indices: 24923654--24923690 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
24923644 TCAATCACCC
24923654 AAAAAAGAAAA
1 AAAAAAGAAAA
*
24923665 AAAAAAGAAAG
1 AAAAAAGAAAA
24923676 AAAAAAGAAAGA
1 AAAAAAGAAA-A
24923688 AAA
1 AAA
24923691 GAAAAGAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 20 0.87
12 3 0.13
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (11 bp):
AAAAAAGAAAA
Found at i:24923677 original size:15 final size:16
Alignment explanation
Indices: 24923656--24923695 Score: 64
Period size: 15 Copynumber: 2.6 Consensus size: 16
24923646 AATCACCCAA
24923656 AAAAGAAAAAAAAAAG
1 AAAAGAAAAAAAAAAG
*
24923672 -AAAGAAAAAAGAAAG
1 AAAAGAAAAAAAAAAG
24923687 AAAAGAAAA
1 AAAAGAAAA
24923696 GAATGTGTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 14 0.64
16 8 0.36
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (16 bp):
AAAAGAAAAAAAAAAG
Found at i:24928524 original size:23 final size:22
Alignment explanation
Indices: 24928494--24928558 Score: 60
Period size: 23 Copynumber: 3.0 Consensus size: 22
24928484 ATCCGGGTTA
24928494 AACAGGAAACTCCTAAGAGTTT
1 AACAGGAAACTCCTAAGAGTTT
* * * *
24928516 GAACAGGAAGCTCAT-TGAGCTT
1 -AACAGGAAACTCCTAAGAGTTT
* *
24928538 AACAGGTAACTCCAAAGAGTT
1 AACAGGAAACTCCTAAGAGTT
24928559 ATTAAAAGGA
Statistics
Matches: 31, Mismatches: 10, Indels: 3
0.70 0.23 0.07
Matches are distributed among these distances:
21 10 0.32
22 9 0.29
23 12 0.39
ACGTcount: A:0.38, C:0.18, G:0.22, T:0.22
Consensus pattern (22 bp):
AACAGGAAACTCCTAAGAGTTT
Found at i:24930842 original size:29 final size:29
Alignment explanation
Indices: 24930809--24930919 Score: 127
Period size: 29 Copynumber: 3.9 Consensus size: 29
24930799 TGAATATGAC
* *
24930809 TGGGCCTAACAGGCCATATAAATGTGATT
1 TGGGCTTAATAGGCCATATAAATGTGATT
*
24930838 TGGGCTTAATGGGCCATATACAA-GTGATT
1 TGGGCTTAATAGGCCATATA-AATGTGATT
* * *
24930867 TGGGCTTAATGGGCCATATGAATATGA-T
1 TGGGCTTAATAGGCCATATAAATGTGATT
* *
24930895 TGGGCTTAATAGGCCAGATACATGT
1 TGGGCTTAATAGGCCATATAAATGT
24930920 ATGTGAATTT
Statistics
Matches: 70, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
28 23 0.33
29 45 0.64
30 2 0.03
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (29 bp):
TGGGCTTAATAGGCCATATAAATGTGATT
Found at i:24930909 original size:28 final size:29
Alignment explanation
Indices: 24930796--24930910 Score: 121
Period size: 29 Copynumber: 4.0 Consensus size: 29
24930786 GTGAGCATGA
* * *
24930796 ATATGAATATGA-CTGGGCCTAACAGGCC
1 ATATGAATATGATTTGGGCTTAATAGGCC
* * *
24930824 ATATAAATGTGATTTGGGCTTAATGGGCC
1 ATATGAATATGATTTGGGCTTAATAGGCC
*
24930853 ATAT-ACA-AGTGATTTGGGCTTAATGGGCC
1 ATATGA-ATA-TGATTTGGGCTTAATAGGCC
24930882 ATATGAATATGA-TTGGGCTTAATAGGCC
1 ATATGAATATGATTTGGGCTTAATAGGCC
24930910 A
1 A
24930911 GATACATGTA
Statistics
Matches: 74, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
28 27 0.36
29 45 0.61
30 2 0.03
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (29 bp):
ATATGAATATGATTTGGGCTTAATAGGCC
Found at i:24935270 original size:29 final size:28
Alignment explanation
Indices: 24935213--24935316 Score: 77
Period size: 29 Copynumber: 3.7 Consensus size: 28
24935203 GTGAGCATGA
* **
24935213 ATATGAATGTGAC-TGGGCCTAACAGGCC
1 ATATAAATGTGACTTGGGCCTATGA-GCC
24935241 ATATAAATGTGACTTGGGCCTGATGAGCC
1 ATATAAATGTGACTTGGGCCT-ATGAGCC
* * * * *
24935270 ATATACAGGTGATTTGAGCCTAATGGGCC
1 ATATAAATGTGACTTGGGCCT-ATGAGCC
* *
24935299 ATATGAATATGA-TTGGGC
1 ATATAAATGTGACTTGGGC
24935317 TTAATGGGCC
Statistics
Matches: 60, Mismatches: 14, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
28 17 0.28
29 41 0.68
30 2 0.03
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.27
Consensus pattern (28 bp):
ATATAAATGTGACTTGGGCCTATGAGCC
Found at i:24935644 original size:27 final size:26
Alignment explanation
Indices: 24935610--24935663 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 26
24935600 AACCATAATT
* *
24935610 AAGGGAAAATTACCGAAATACCCCTA
1 AAGGGAAAATGACCAAAATACCCCTA
24935636 AAGGCGAAAATGACCAAAATACCCCTA
1 AAGG-GAAAATGACCAAAATACCCCTA
24935663 A
1 A
24935664 GTGTTGAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 4 0.16
27 21 0.84
ACGTcount: A:0.48, C:0.24, G:0.15, T:0.13
Consensus pattern (26 bp):
AAGGGAAAATGACCAAAATACCCCTA
Found at i:24937275 original size:16 final size:16
Alignment explanation
Indices: 24937239--24937290 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
24937229 TTTAAATACC
**
24937239 AAAATTAAATATAACA
1 AAAATTAAATATATTA
*
24937255 TAAATTAAATATATTA
1 AAAATTAAATATATTA
*
24937271 AAAA-TAAAAATATTTA
1 AAAATTAAATATA-TTA
24937287 AAAA
1 AAAA
24937291 ATATATTAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
15 7 0.23
16 23 0.77
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (16 bp):
AAAATTAAATATATTA
Found at i:24937320 original size:28 final size:26
Alignment explanation
Indices: 24937259--24937320 Score: 61
Period size: 28 Copynumber: 2.2 Consensus size: 26
24937249 ATAACATAAA
24937259 TTAAATATATTAAAAATAAAAATATT
1 TTAAATATATTAAAAATAAAAATATT
* * *
24937285 TAAAAAATATATTAAACGATCAAAATAGTT
1 T--TAAATATATTAAA-AATAAAAATA-TT
24937315 TTAAAT
1 TTAAAT
24937321 GAAACATATC
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
26 1 0.04
28 16 0.57
29 8 0.29
30 3 0.11
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.35
Consensus pattern (26 bp):
TTAAATATATTAAAAATAAAAATATT
Found at i:24938533 original size:17 final size:17
Alignment explanation
Indices: 24938513--24938572 Score: 72
Period size: 17 Copynumber: 3.6 Consensus size: 17
24938503 GTTTATAAGT
*
24938513 AAAAATCATTTAACTAC
1 AAAAATAATTTAACTAC
24938530 AAAAATAATTTGAA-T--
1 AAAAATAATTT-AACTAC
*
24938545 AAAAATCATTTAACTAC
1 AAAAATAATTTAACTAC
24938562 AAAAATAATTT
1 AAAAATAATTT
24938573 GAAGGTAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
14 2 0.06
15 11 0.31
17 21 0.58
18 2 0.06
ACGTcount: A:0.57, C:0.10, G:0.02, T:0.32
Consensus pattern (17 bp):
AAAAATAATTTAACTAC
Found at i:24938548 original size:32 final size:32
Alignment explanation
Indices: 24938512--24938575 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
24938502 GGTTTATAAG
24938512 TAAAAATCATTTAACTACAAAAATAATTTGAA
1 TAAAAATCATTTAACTACAAAAATAATTTGAA
24938544 TAAAAATCATTTAACTACAAAAATAATTTGAA
1 TAAAAATCATTTAACTACAAAAATAATTTGAA
24938576 GGTAAAATAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.56, C:0.09, G:0.03, T:0.31
Consensus pattern (32 bp):
TAAAAATCATTTAACTACAAAAATAATTTGAA
Found at i:24943003 original size:18 final size:18
Alignment explanation
Indices: 24942980--24943016 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
24942970 GGACAGAATG
24942980 TCAATTTGGTATCGATAT
1 TCAATTTGGTATCGATAT
24942998 TCAATTTGGTATCGATAT
1 TCAATTTGGTATCGATAT
24943016 T
1 T
24943017 TATAAGTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.11, G:0.16, T:0.46
Consensus pattern (18 bp):
TCAATTTGGTATCGATAT
Found at i:24943300 original size:19 final size:19
Alignment explanation
Indices: 24943276--24943366 Score: 143
Period size: 19 Copynumber: 4.9 Consensus size: 19
24943266 ATAATCTTCA
24943276 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
24943295 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
24943314 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
24943331 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
* *
24943349 ATGATATGAAATATTAGA
1 ATGATATGCAATCTTAGA
24943367 AGATATGATT
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 35 0.52
ACGTcount: A:0.40, C:0.09, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:24943347 original size:35 final size:36
Alignment explanation
Indices: 24943284--24943354 Score: 135
Period size: 35 Copynumber: 2.0 Consensus size: 36
24943274 CAATGATATG
24943284 CAATCTTAGATATGATATGCAATCTTAGATATGATA
1 CAATCTTAGATATGATATGCAATCTTAGATATGATA
24943320 CAATCTTAGATATGAT-TGCAATCTTAGATATGATA
1 CAATCTTAGATATGATATGCAATCTTAGATATGATA
24943355 TGAAATATTA
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
35 19 0.54
36 16 0.46
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.37
Consensus pattern (36 bp):
CAATCTTAGATATGATATGCAATCTTAGATATGATA
Found at i:24951244 original size:89 final size:87
Alignment explanation
Indices: 24951115--24951276 Score: 202
Period size: 89 Copynumber: 1.8 Consensus size: 87
24951105 ATTCGACGGA
* *
24951115 GAGCAGATCGAAGACATGGCAGATCTAACCTTCGGATGTTT-TCACATCGAAGCAGATCCAAGAT
1 GAGCAGATCGAAGACATAGCAGATCTAACCTTCCGATGTTTGT-AC-T-GAAGCAGATCCAAGAT
24951179 GATTTGGCATCCTTGCGTTTACAAG
63 GATTTGGCATCCTTGCGTTTACAAG
* ** * * *
24951204 GAGCAGATCGAAGACATAGCAGATTTGGCTTTCACG-TGTTTGTGCTGAAGCAGATCTAAGATGA
1 GAGCAGATCGAAGACATAGCAGATCTAACCTTC-CGATGTTTGTACTGAAGCAGATCCAAGATGA
24951268 TTTGGCATC
65 TTTGGCATC
24951277 TTTGTACTAT
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
87 26 0.41
88 1 0.02
89 34 0.54
90 2 0.03
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.27
Consensus pattern (87 bp):
GAGCAGATCGAAGACATAGCAGATCTAACCTTCCGATGTTTGTACTGAAGCAGATCCAAGATGAT
TTGGCATCCTTGCGTTTACAAG
Found at i:24951420 original size:78 final size:78
Alignment explanation
Indices: 24951309--24951758 Score: 661
Period size: 78 Copynumber: 5.8 Consensus size: 78
24951299 CGAAGAAATA
* ** * * * * *
24951309 GATTTGCCATCTCCATATTCGACGGAGAGCAGATCGAAGGCACAGTAGATATGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAACAGATCGAAGACACAGCAGATATGACCTTCATTGAA
24951374 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * * * *
24951387 GATTTGGCATCTCCGTATTAGACGGGGAACAGATCAAAGACACAGTAGATCTAACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAACAGATCGAAGACACAGCAGATATGACCTTCATTGAA
24951452 GCAGATCCAAGAT
66 GCAGATCCAAGAT
24951465 GATTTGGCATCTCTGTATTAGACGGGGAACAGATCGAAGACACAGCAGATATGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAACAGATCGAAGACACAGCAGATATGACCTTCATTGAA
24951530 GCAGATCCAAGAT
66 GCAGATCCAAGAT
24951543 GATTTGGCATCTCTGTATTAGACGGGGAACAGATCGAAGACACAGCAGATATGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAACAGATCGAAGACACAGCAGATATGACCTTCATTGAA
24951608 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * ** * *
24951621 GATTTGGCATCTCTATATTAGACGGGGAGCAGATAAAAGA-ATAACAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAACAGATCGAAGACACAGCAGATAT-GACCTTCATTGA
*
24951684 AGCAAATCCAAGAT
65 AGCAGATCCAAGAT
* * * *
24951698 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
1 GATTTGGCATCTCTGTATTAGACGGGGAACAGATCGAAGACACAGCAGATATGACCTTCAT
24951759 GTGTTTACAT
Statistics
Matches: 343, Mismatches: 26, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
76 1 0.00
77 68 0.20
78 273 0.80
79 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAACAGATCGAAGACACAGCAGATATGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:24951892 original size:44 final size:45
Alignment explanation
Indices: 24951698--24951971 Score: 213
Period size: 45 Copynumber: 6.1 Consensus size: 45
24951688 AATCCAAGAT
*
24951698 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGACATAGCA
1 GATTTGGTATCTCTGTATTAGACAGGGAGCAGATCGAAG--ATAGCA
* * * * * * * *
24951745 GATCT-G-ACCTTCATGTGTT-TACATCGAAGCAGATCCAAGAT-GATA
1 GATTTGGTATC-TC-TGTATTAGACA-GGGAGCAGATCGAAGATAG-CA
* * * *
24951790 GATTTGGCATCTCTGTATTAGA-TGAGGAGCAAATC-AGAGATAACA
1 GATTTGGTATCTCTGTATTAGACAG-GGAGCAGATCGA-AGATAGCA
* *
24951835 GATTTGGTATCTCTGTATTAGACAGGGAGTAGATTGAAGA-AGCA
1 GATTTGGTATCTCTGTATTAGACAGGGAGCAGATCGAAGATAGCA
** * *
24951879 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
1 GATTTGGTATCTCTGTATTAGACAGGGAGCAGATCGAAGATAGCA
* * *
24951924 AATTTGGTATCTCTGAATTAGA-AGAGGAGCAGATCAAAGATAGCA
1 GATTTGGTATCTCTGTATTAGACAG-GGAGCAGATCGAAGATAGCA
24951969 GAT
1 GAT
24951972 ATCGCCTTCC
Statistics
Matches: 175, Mismatches: 38, Indels: 30
0.72 0.16 0.12
Matches are distributed among these distances:
44 41 0.23
45 99 0.57
46 12 0.07
47 23 0.13
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.26
Consensus pattern (45 bp):
GATTTGGTATCTCTGTATTAGACAGGGAGCAGATCGAAGATAGCA
Found at i:24951944 original size:89 final size:90
Alignment explanation
Indices: 24951772--24951971 Score: 246
Period size: 89 Copynumber: 2.2 Consensus size: 90
24951762 TTTACATCGA
* * * *
24951772 AGCAGATCCAAGAT-GATAGATTTGGCATCTCTGTATTAGATGAGGAGCAAATCAGAGATAACAG
1 AGCAGATCAAAGATAG-CAGATTTGGCATCTCTGTATTAGACGAGGAGCAAATCAGAGATAACAA
*
24951836 ATTTGGTATCTCTGTATTAGACAG-GG
65 ATTTGGTATCTCTGAATTAGA-AGAGG
* ** * * *
24951862 AGTAGATTGAAGA-AGCAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATC-GAAGATAACAA
1 AGCAGATCAAAGATAGCAGATTTGGCATCTCTGTATTAGACGAGGAGCAAATCAG-AGATAACAA
24951925 ATTTGGTATCTCTGAATTAGAAGAGG
65 ATTTGGTATCTCTGAATTAGAAGAGG
24951951 AGCAGATCAAAGATAGCAGAT
1 AGCAGATCAAAGATAGCAGAT
24951972 ATCGCCTTCC
Statistics
Matches: 93, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
88 3 0.03
89 72 0.77
90 18 0.19
ACGTcount: A:0.35, C:0.12, G:0.27, T:0.26
Consensus pattern (90 bp):
AGCAGATCAAAGATAGCAGATTTGGCATCTCTGTATTAGACGAGGAGCAAATCAGAGATAACAAA
TTTGGTATCTCTGAATTAGAAGAGG
Found at i:24952345 original size:19 final size:19
Alignment explanation
Indices: 24952321--24952357 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
24952311 ATAATCTTTA
24952321 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
24952340 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
24952358 AGATATGATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:24952383 original size:22 final size:22
Alignment explanation
Indices: 24952321--24952380 Score: 72
Period size: 19 Copynumber: 2.8 Consensus size: 22
24952311 ATAATCTTTA
24952321 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
24952340 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
24952362 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
24952381 GATTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.43
22 8 0.23
23 12 0.34
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:24952672 original size:18 final size:19
Alignment explanation
Indices: 24952649--24952684 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
24952639 TTTCCCTGAT
*
24952649 TTTTTTTATAT-ATTTTAA
1 TTTTTTTAAATAATTTTAA
24952667 TTTTTTTAAATAATTTTA
1 TTTTTTTAAATAATTTTA
24952685 GTATCATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (19 bp):
TTTTTTTAAATAATTTTAA
Found at i:24955246 original size:12 final size:12
Alignment explanation
Indices: 24955231--24955265 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
24955221 TTGTTCTACA
*
24955231 TTTTTTTCTTTC
1 TTTTCTTCTTTC
24955243 TTTTCTTCTTTC
1 TTTTCTTCTTTC
*
24955255 TTTCCTTCTTT
1 TTTTCTTCTTT
24955266 TTCGCCTTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (12 bp):
TTTTCTTCTTTC
Found at i:24955778 original size:767 final size:762
Alignment explanation
Indices: 24954415--24955836 Score: 2174
Period size: 767 Copynumber: 1.9 Consensus size: 762
24954405 NNNNNNNNNN
* * * *
24954415 ACCAACTTCTCTTTTGTTGCACTTTTCTTTCCCTATTTTAATTTTTGTTTTACATTTTTTCTTTT
1 ACCAACTTCTCTTTGGTTGCACGTTTCTTTCCCTATTTTAATCTTTGTTCTACATTTTTTCTTTT
* *
24954480 TTTTTCTTTCTTTCCTTGTTTTTTGCCTTGCCAATGCCGACTCCTTTTATTATTGTGCCAATTGC
66 TTTTTCTTTCTTTCCTTCTTTTTCGCCTTGCCAATGCCGACTCCTTTTATTATTGTGCCAATTGC
* * * *
24954545 AAAATATTTTTTTTTGTTGCGTAAGAACACTGTTGAGGCTTGTTATGATTCTGTTGTTCGCTTGT
131 AAAATACTTTCTTTAGTTGCGTAAGAACACTGTTGAGGCTTGTTATGATTCTGTTGTTCGCTAGT
**
24954610 TTCTTTCTTTTCCTTGTGGTGGCTTGGTTGTGTTGGTAGTTGTGCAAGATTAGTTCTTAATAAGG
196 TTCTTTCTTTTCCTCATGGTGGCTTGGTTGTGTTGGTAGTTGTGCAAGATTAGTTCTTAATAAGG
* *
24954675 TTGGGGTTTTGTTATTTTAAGAAAAAAATTCCGTAGATTAATGATTTTATGATTGATATAGTGTT
261 TTGGGGTTTTGTTATTTTAAGAAAAAAATTCCATAGATTAATGATTTTATGATCGATATAGTGTT
** *
24954740 GTGGCTGGTTGTTGTGGATAGGAGAAGAGCACGTGGTGATAGACAACCCTTTGACAAATTAAGGT
326 GTGGCTGGTTGTTGTGGATAGGAGAAGAGCACGTGGTGATAGACAACCCTCCGAAAAATTAAGGT
* * * *
24954805 TTTGGAGTAGTTGTTGCAAGTTTGTGGTAACTACTTGTTTATGAATATAGGGACTGTTTCTTTGA
391 TTTGGAGTAGTTGCTGCAAGTTTGTGGTAACTACTTGTTTATGAATATAGGAACTATTTCTTTAA
* ** * * *
24954870 GAAAAGAGCAAATTTAAGTGGTAACCTTCGTGTTAAATTGAAGTTGTAATCGTTGGTTTTGGTTC
456 GAAAAGAGAAAAAATAAGCGGTAACCTTCGTGTTAAATCGAAGTTGTAATCGTTGGTTTTGGTGC
* * * *
24954935 CGTTTGTAGGATTTTAAGAGTACGACTGCATGATGGATTAATCTCGTTATCAAGTGTGTGGAAAC
521 CGTTTATAGGATTTTAAGAGTACGACTACATGATGGATTAATCTCGCTATCAAGTGTGTGAAAAC
* * * * * **
24955000 AATACTAAAACTCGATAGAAACTCATTAAATCGTGAAACATGGGTTGTTTTTTGAAACTTTCCAG
586 AATACTAAAACTCGATAGAAACTCATTAAATAGTGAAACAGGGGCTATTTTTCGAAACTACCCAG
24955065 TGCCACACGGTCGTGTGTCAAGCCGTATAGTAGATTGTGTACACCACACAGCCGTGTAATTTTAT
651 TGCCACACGGTCGTGTGTCAAGCCGTATAGTAGATTGTGTACACCACACAGCCGTGTAATTTTAT
24955130 TCTTTTAAATAAAATCCCTATTATTTTTCTCTTTCGGCAACCATCAA
716 TCTTTTAAATAAAATCCCTATTATTTTTCTCTTTCGGCAACCATCAA
24955177 ACCAACTTCTCTTTGGTTGCACGTTTCTTTCCC-ATCTTTCAA-CTTTGTTCTACATTTTTTTCT
1 ACCAACTTCTCTTTGGTTGCACGTTTCTTTCCCTAT-TTT-AATCTTTGTTCTACA-TTTTTTCT
* * *
24955240 TTCTTTTCTTCTTTCTTTCCTTCTTTTTCGCCTTGTCAATGTCGACTCCTTTTGTTATTGTGCCA
63 TT-TTTT-TTCTTTCTTTCCTTCTTTTTCGCCTTGCCAATGCCGACTCCTTTTATTATTGTGCCA
*
24955305 ATTGCAAAAT-CTTTCTTTAGTTGCGTGAGAACACTGTTGAGGCTTGTTATGATTCTGTTGTTCG
126 ATTGCAAAATACTTTCTTTAGTTGCGTAAGAACACTGTTGAGGCTTGTTATGATTCTGTTGTTCG
*
24955369 CTAGTTTCTTT-TTTGTCCTCATGGTGGCTTGGTTGTGTTGGTAAGTTGTGTGGAAGATTAGTTC
191 CTAGTTTCTTTCTTT-TCCTCATGGTGGCTTGGTTGTGTTGGT-AG-T-TGTGCAAGATTAGTTC
24955433 TTAATAAGGTTGGGGTTTTGTTATTTTAAGAAAAAGAA-TCCATAGATTAATGATTTTATGATCG
252 TTAATAAGGTTGGGGTTTTGTTATTTTAAGAAAAA-AATTCCATAGATTAATGATTTTATGATCG
24955497 ATATAGTGTTGTGGCTGGTTGTTGTGGATAGGAGAAGAGCACGTGGTGATAGACAACCCTCCGAA
316 ATATAGTGTTGTGGCTGGTTGTTGTGGATAGGAGAAGAGCACGTGGTGATAGACAACCCTCCGAA
*
24955562 AAATTAAGGTTTTGGAGTATTTGCTGCAAGTTTGTGGTAACTACTTGTTTATGAATATAGGAACT
381 AAATTAAGGTTTTGGAGTAGTTGCTGCAAGTTTGTGGTAACTACTTGTTTATGAATATAGGAACT
** *
24955627 ATTTCTTTAAGAAAAGA-AAAAAATAAGGCGGTAATGTTCGTGTTAAATCGAAGTTTTAATCGTT
446 ATTTCTTTAAGAAAAGAGAAAAAATAA-GCGGTAACCTTCGTGTTAAATCGAAGTTGTAATCGTT
* * * ** * * *
24955691 GGTTTTGGTGCCGTTTATAGGATTTTATGTGTATGACTATGTGGTGGATTAATCTCGCTATTAGG
510 GGTTTTGGTGCCGTTTATAGGATTTTAAGAGTACGACTACATGATGGATTAATCTCGCTATCAAG
* *
24955756 TGTGTGAAAACGAT-CTTAAAACTTGATAGAAACTCATTAAATAGTGAAACAGGGGCTATTTTTC
575 TGTGTGAAAACAATAC-TAAAACTCGATAGAAACTCATTAAATAGTGAAACAGGGGCTATTTTTC
24955820 GAAACTACCCAGTGCCA
639 GAAACTACCCAGTGCCA
24955837 TACAGCCGTG
Statistics
Matches: 591, Mismatches: 57, Indels: 19
0.89 0.09 0.03
Matches are distributed among these distances:
761 2 0.00
762 44 0.07
763 15 0.03
764 89 0.15
765 64 0.11
766 8 0.01
767 367 0.62
768 2 0.00
ACGTcount: A:0.24, C:0.14, G:0.21, T:0.41
Consensus pattern (762 bp):
ACCAACTTCTCTTTGGTTGCACGTTTCTTTCCCTATTTTAATCTTTGTTCTACATTTTTTCTTTT
TTTTTCTTTCTTTCCTTCTTTTTCGCCTTGCCAATGCCGACTCCTTTTATTATTGTGCCAATTGC
AAAATACTTTCTTTAGTTGCGTAAGAACACTGTTGAGGCTTGTTATGATTCTGTTGTTCGCTAGT
TTCTTTCTTTTCCTCATGGTGGCTTGGTTGTGTTGGTAGTTGTGCAAGATTAGTTCTTAATAAGG
TTGGGGTTTTGTTATTTTAAGAAAAAAATTCCATAGATTAATGATTTTATGATCGATATAGTGTT
GTGGCTGGTTGTTGTGGATAGGAGAAGAGCACGTGGTGATAGACAACCCTCCGAAAAATTAAGGT
TTTGGAGTAGTTGCTGCAAGTTTGTGGTAACTACTTGTTTATGAATATAGGAACTATTTCTTTAA
GAAAAGAGAAAAAATAAGCGGTAACCTTCGTGTTAAATCGAAGTTGTAATCGTTGGTTTTGGTGC
CGTTTATAGGATTTTAAGAGTACGACTACATGATGGATTAATCTCGCTATCAAGTGTGTGAAAAC
AATACTAAAACTCGATAGAAACTCATTAAATAGTGAAACAGGGGCTATTTTTCGAAACTACCCAG
TGCCACACGGTCGTGTGTCAAGCCGTATAGTAGATTGTGTACACCACACAGCCGTGTAATTTTAT
TCTTTTAAATAAAATCCCTATTATTTTTCTCTTTCGGCAACCATCAA
Found at i:24957207 original size:25 final size:25
Alignment explanation
Indices: 24957179--24957228 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
24957169 AAAAGAATGC
24957179 GAACATCACATCCAGCATGATTGGA
1 GAACATCACATCCAGCATGATTGGA
24957204 GAACATCACATCCAGCATGATTGGA
1 GAACATCACATCCAGCATGATTGGA
24957229 CACGATATTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.24, G:0.20, T:0.20
Consensus pattern (25 bp):
GAACATCACATCCAGCATGATTGGA
Found at i:24960819 original size:25 final size:25
Alignment explanation
Indices: 24960791--24960840 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
24960781 AAAAGAATGC
24960791 GAACATCACATCCAGCATGATTGGA
1 GAACATCACATCCAGCATGATTGGA
24960816 GAACATCACATCCAGCATGATTGGA
1 GAACATCACATCCAGCATGATTGGA
24960841 CACGATATTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.24, G:0.20, T:0.20
Consensus pattern (25 bp):
GAACATCACATCCAGCATGATTGGA
Found at i:24961495 original size:19 final size:19
Alignment explanation
Indices: 24961471--24961514 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
24961461 AAATATGATA
24961471 AACAAATAATATATAAAAT
1 AACAAATAATATATAAAAT
* *
24961490 AACAAATAATTTATGAAAT
1 AACAAATAATATATAAAAT
24961509 AA-AAAT
1 AACAAAT
24961515 TAACCTACTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.66, C:0.05, G:0.02, T:0.27
Consensus pattern (19 bp):
AACAAATAATATATAAAAT
Found at i:24961978 original size:21 final size:21
Alignment explanation
Indices: 24961940--24961983 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
24961930 AAATCGAGAT
*
24961940 GGTCATCAATGCTCTGTCTCA
1 GGTCATCAATGCTCTGTCACA
24961961 GGTCATCAATGCAT-TGTCACA
1 GGTCATCAATGC-TCTGTCACA
24961982 GG
1 GG
24961984 CCCTTCAATG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 20 0.95
22 1 0.05
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.30
Consensus pattern (21 bp):
GGTCATCAATGCTCTGTCACA
Found at i:24962483 original size:13 final size:13
Alignment explanation
Indices: 24962465--24962489 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24962455 CTCTTTCTAC
24962465 TTTTATTTTATTT
1 TTTTATTTTATTT
24962478 TTTTATTTTATT
1 TTTTATTTTATT
24962490 GCAAGCAATC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (13 bp):
TTTTATTTTATTT
Found at i:24963222 original size:16 final size:14
Alignment explanation
Indices: 24963190--24963581 Score: 102
Period size: 14 Copynumber: 27.3 Consensus size: 14
24963180 TTTATTTTCT
* *
24963190 TATATTATATGTTA
1 TATATTATTTATTA
24963204 TATGATTATTTTATTA
1 TAT-ATTA-TTTATTA
*
24963220 TATGTTATTTATTTTA
1 TATATTATTTA--TTA
24963236 TATATTA-TTATTA
1 TATATTATTTATTA
*
24963249 CATATTATTTATTA
1 TATATTATTTATTA
24963263 TATA-T-TTTA-TA
1 TATATTATTTATTA
* * *
24963274 CATATTA-GTATTT
1 TATATTATTTATTA
24963287 TATATTA-TTATT-
1 TATATTATTTATTA
24963299 TATA-TATATTATTA
1 TATATTAT-TTATTA
** **
24963313 T-CCTTAACTATTA
1 TATATTATTTATTA
* *
24963326 TATTTTATTAATTA
1 TATATTATTTATTA
* *
24963340 -ATTATTTATATACTA
1 TA-TA-TTATTTATTA
*
24963355 TATATTATTGTAATTT
1 TATATTATT-T-ATTA
* * *
24963371 TGA-ACCTATATACTTT
1 T-ATA-TTATTTA-TTA
*
24963387 TATATTATATATTA
1 TATATTATTTATTA
*
24963401 TATATTATATAATTA
1 TATATTAT-TTATTA
*
24963416 T-T-TTATTTACTATG
1 TATATTATTTA-T-TA
*
24963430 TAAATTATTTATTTTA
1 TATATTATTTA--TTA
24963446 TATATTA-TTATTA
1 TATATTATTTATTA
24963459 TATATTTTGATATTATTA
1 TATA--TT-AT-TTATTA
* *
24963477 TCAAAATATTATATT-
1 T-ATATTATT-TATTA
*
24963492 TGTATTATATGT-TTA
1 TATATTAT-T-TATTA
*
24963507 TTATATTATTAATTA
1 -TATATTATTTATTA
*
24963522 CT-TATTTTTTATTA
1 -TATATTATTTATTA
* *
24963536 TGTATTATTTTATTC
1 TATATTA-TTTATTA
* *
24963551 TAAATTATTT-TTT
1 TATATTATTTATTA
24963564 TA-ATTATTTTATTA
1 TATATTA-TTTATTA
24963578 TATA
1 TATA
24963582 GATTAATTCT
Statistics
Matches: 278, Mismatches: 56, Indels: 87
0.66 0.13 0.21
Matches are distributed among these distances:
11 7 0.03
12 17 0.06
13 53 0.19
14 71 0.26
15 59 0.21
16 56 0.20
17 6 0.02
18 7 0.03
19 2 0.01
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.60
Consensus pattern (14 bp):
TATATTATTTATTA
Found at i:24963241 original size:23 final size:22
Alignment explanation
Indices: 24963156--24963243 Score: 83
Period size: 23 Copynumber: 3.9 Consensus size: 22
24963146 GCCCTATGTT
*
24963156 TTATTTATTTTTATAAT-TAT-
1 TTATTTATTTTTATATTATATG
24963176 TTATTTTATTTTCTTATATTATATG
1 TTA-TTTA-TTT-TTATATTATATG
*
24963201 TTATATGATTATTT-TATTATATG
1 TTAT-TTATT-TTTATATTATATG
24963224 TTATTTATTTTATATATTAT
1 TTATTTATTTT-TATATTAT
24963244 TATTACATAT
Statistics
Matches: 56, Mismatches: 3, Indels: 15
0.76 0.04 0.20
Matches are distributed among these distances:
20 3 0.05
21 6 0.11
22 8 0.14
23 25 0.45
24 8 0.14
25 6 0.11
ACGTcount: A:0.28, C:0.01, G:0.03, T:0.67
Consensus pattern (22 bp):
TTATTTATTTTTATATTATATG
Found at i:24963243 original size:7 final size:7
Alignment explanation
Indices: 24963190--24963474 Score: 99
Period size: 7 Copynumber: 39.1 Consensus size: 7
24963180 TTTATTTTCT
24963190 TATATTA
1 TATATTA
*
24963197 TATGTTA
1 TATATTA
24963204 TATGATTA
1 TAT-ATTA
*
24963212 TTTTATTA
1 -TATATTA
*
24963220 TATGTTA
1 TATATTA
*
24963227 TTTATTTTA
1 --TATATTA
24963236 TATATTA
1 TATATTA
24963243 T-TATTA
1 TATATTA
*
24963249 CATATTA
1 TATATTA
*
24963256 TTTATTA
1 TATATTA
24963263 TATATT-
1 TATATTA
24963269 T-TA-TA
1 TATATTA
*
24963274 CATATTA
1 TATATTA
*
24963281 GTATTTTA
1 -TATATTA
24963289 TATTATTA
1 TA-TATTA
*
24963297 TTTA-TA
1 TATATTA
24963303 TATATTA
1 TATATTA
*
24963310 TTATCCTTA
1 -TAT-ATTA
24963319 -ACTATTA
1 TA-TATTA
*
24963326 TATTTTA
1 TATATTA
24963333 T-TAATTA
1 TAT-ATTA
24963340 -ATTATTTA
1 TA-TA-TTA
*
24963348 TATACTA
1 TATATTA
24963355 TATATTA
1 TATATTA
* *
24963362 TTGTAATTT
1 -TAT-ATTA
*
24963371 TGA-ACCTA
1 T-ATA-TTA
*
24963379 TATACTTT
1 TATA-TTA
24963387 TATATTA
1 TATATTA
24963394 TATATTA
1 TATATTA
24963401 TATATTA
1 TATATTA
24963408 TATAATTA
1 TAT-ATTA
*
24963416 TTTTATT-
1 -TATATTA
24963423 TACTATGTA
1 TA-TAT-TA
*
24963432 AATTATT-
1 TA-TATTA
*
24963439 TATTTTA
1 TATATTA
24963446 TATATTA
1 TATATTA
24963453 T-TATTA
1 TATATTA
*
24963459 TATATTT
1 TATATTA
24963466 TGATATTA
1 T-ATATTA
24963474 T
1 T
24963475 TATCAAAATA
Statistics
Matches: 205, Mismatches: 40, Indels: 65
0.66 0.13 0.21
Matches are distributed among these distances:
4 1 0.00
5 2 0.01
6 24 0.12
7 102 0.50
8 55 0.27
9 21 0.10
ACGTcount: A:0.35, C:0.04, G:0.03, T:0.59
Consensus pattern (7 bp):
TATATTA
Found at i:24963256 original size:29 final size:28
Alignment explanation
Indices: 24963210--24963291 Score: 100
Period size: 29 Copynumber: 3.0 Consensus size: 28
24963200 GTTATATGAT
* *
24963210 TATTTTATTATATGTTATTTATTTTATA
1 TATTTTATTACATATTATTTATTTTATA
24963238 TATTATTATTACATATTATTTA--TTATA
1 TATT-TTATTACATATTATTTATTTTATA
*
24963265 TATTTTA-TACATATTA-GTATTTTATA
1 TATTTTATTACATATTATTTATTTTATA
24963291 T
1 T
24963292 TATTATTTAT
Statistics
Matches: 48, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
24 2 0.04
25 9 0.19
26 9 0.19
27 9 0.19
28 4 0.08
29 15 0.31
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (28 bp):
TATTTTATTACATATTATTTATTTTATA
Found at i:24963300 original size:29 final size:27
Alignment explanation
Indices: 24963191--24963310 Score: 95
Period size: 29 Copynumber: 4.3 Consensus size: 27
24963181 TTATTTTCTT
* *
24963191 ATATTATATGTTATATGATTATTTTATTAT
1 ATATTATATTTTATAT-ATTA-TTTA-TAC
*
24963221 ATGTTATTTATTTTATATATTA-TTATTAC
1 ATATTA--TATTTTATATATTATTTA-TAC
24963250 ATATTAT-TTATTATATA-T-TTTATAC
1 ATATTATATT-TTATATATTATTTATAC
*
24963275 ATATTAGTATTTTATATTATTATTTATAT
1 ATATTA-TATTTTATA-TATTATTTATAC
24963304 ATATTAT
1 ATATTAT
24963311 TATCCTTAAC
Statistics
Matches: 76, Mismatches: 5, Indels: 20
0.75 0.05 0.20
Matches are distributed among these distances:
25 9 0.12
26 12 0.16
27 12 0.16
28 2 0.03
29 23 0.30
30 5 0.07
31 4 0.05
32 9 0.12
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.61
Consensus pattern (27 bp):
ATATTATATTTTATATATTATTTATAC
Found at i:24963303 original size:25 final size:24
Alignment explanation
Indices: 24963157--24963313 Score: 82
Period size: 25 Copynumber: 6.5 Consensus size: 24
24963147 CCCTATGTTT
*
24963157 TATT-TATTTT-TATAATTATTTA
1 TATTATATTTTATATTATTATTTA
* *
24963179 TTTTATTTTCTTATATTA-TATGTTA
1 TATTATATT-TTATATTATTAT-TTA
*
24963204 TATGAT-TATTT-TATTA-TATGTTA
1 TATTATAT-TTTATATTATTAT-TTA
*
24963227 T-TTAT-TTTATATATTATTATTACA
1 TATTATATTT-TATATTATTATT-TA
* **
24963251 TATTAT-TTATTATATATTTTATACA
1 TATTATATT-TTATAT-TATTATTTA
24963276 TATTAGTATTTTATATTATTATTTA
1 TATTA-TATTTTATATTATTATTTA
24963301 TA-TATATTATTAT
1 TATTATATT-TTAT
24963314 CCTTAACTAT
Statistics
Matches: 108, Mismatches: 12, Indels: 28
0.73 0.08 0.19
Matches are distributed among these distances:
21 2 0.02
22 8 0.07
23 26 0.24
24 19 0.18
25 38 0.35
26 13 0.12
27 2 0.02
ACGTcount: A:0.32, C:0.02, G:0.03, T:0.64
Consensus pattern (24 bp):
TATTATATTTTATATTATTATTTA
Found at i:24963421 original size:20 final size:20
Alignment explanation
Indices: 24963398--24963464 Score: 61
Period size: 20 Copynumber: 3.5 Consensus size: 20
24963388 ATATTATATA
24963398 TTATATATTATATAATTATT
1 TTATATATTATATAATTATT
* * *
24963418 TTATTTACTATGTAAATTA-T
1 TTATATATTATAT-AATTATT
24963438 TTAT-T-TTATAT-ATTATT
1 TTATATATTATATAATTATT
24963455 ATTATATATT
1 -TTATATATT
24963465 TTGATATTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 10
0.71 0.10 0.19
Matches are distributed among these distances:
16 4 0.11
17 1 0.03
18 8 0.22
19 2 0.05
20 17 0.46
21 5 0.14
ACGTcount: A:0.36, C:0.01, G:0.01, T:0.61
Consensus pattern (20 bp):
TTATATATTATATAATTATT
Found at i:24963570 original size:12 final size:15
Alignment explanation
Indices: 24963539--24963576 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 15
24963529 TTTATTATGT
24963539 ATTATTTTATTCTAA
1 ATTATTTTATTCTAA
24963554 ATTATTTT-TT-T-A
1 ATTATTTTATTCTAA
24963566 ATTATTTTATT
1 ATTATTTTATT
24963577 ATATAGATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 9 0.41
13 3 0.14
14 2 0.09
15 8 0.36
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (15 bp):
ATTATTTTATTCTAA
Found at i:24963718 original size:23 final size:21
Alignment explanation
Indices: 24963672--24963718 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 21
24963662 AGAATTGGTA
*
24963672 TATATATATTATTATCATTCT
1 TATATATATTATTATCATTAT
*
24963693 TATATATATTAATGTATTATTAT
1 TATATATATT-AT-TATCATTAT
24963716 TAT
1 TAT
24963719 CTTTGTATGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 10 0.45
22 2 0.09
23 10 0.45
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.57
Consensus pattern (21 bp):
TATATATATTATTATCATTAT
Found at i:24963718 original size:32 final size:32
Alignment explanation
Indices: 24963678--24963741 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 32
24963668 GGTATATATA
24963678 TATTATTATCATTCT-TATATATATTAATGTAT
1 TATTATTATCATTCTATATATATATTAA-GTAT
* * *
24963710 TATTATTATCTTTGTATGTATATATTAAGTAT
1 TATTATTATCATTCTATATATATATTAAGTAT
24963742 CATGCATTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.33, C:0.05, G:0.06, T:0.56
Consensus pattern (32 bp):
TATTATTATCATTCTATATATATATTAAGTAT
Found at i:24964653 original size:21 final size:22
Alignment explanation
Indices: 24964629--24964702 Score: 75
Period size: 21 Copynumber: 3.4 Consensus size: 22
24964619 AGTAAAATAT
24964629 ATAATATAATAA-AATTTATAA
1 ATAATATAATAATAATTTATAA
* *
24964650 ATAAAATGTATAATAA--TATAA
1 ATAATAT-AATAATAATTTATAA
24964671 ATAATATAATGAATAATTATATAA
1 ATAATATAAT-AATAATT-TATAA
24964695 ATAA-ATAA
1 ATAATATAA
24964703 AAAATAAGAT
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
20 2 0.05
21 22 0.51
22 4 0.09
23 6 0.14
24 9 0.21
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (22 bp):
ATAATATAATAATAATTTATAA
Found at i:24964681 original size:24 final size:24
Alignment explanation
Indices: 24964649--24964702 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
24964639 AAAATTTATA
* *
24964649 AATAAAATGTATAATAATATAAAT
1 AATATAATGAATAATAATATAAAT
*
24964673 AATATAATGAATAATTATATAAAT
1 AATATAATGAATAATAATATAAAT
24964697 AA-ATAA
1 AATATAA
24964703 AAAATAAGAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 4 0.15
24 23 0.85
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (24 bp):
AATATAATGAATAATAATATAAAT
Found at i:24964715 original size:24 final size:24
Alignment explanation
Indices: 24964665--24964717 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
24964655 ATGTATAATA
** *
24964665 ATATAAATAATATAATGAATAATT
1 ATATAAATAATATAAAAAATAAAT
24964689 ATATAAATAA-ATAAAAAATAAGAT
1 ATATAAATAATATAAAAAATAA-AT
24964713 ATATA
1 ATATA
24964718 CTATTTATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 9 0.36
24 16 0.64
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (24 bp):
ATATAAATAATATAAAAAATAAAT
Found at i:24969685 original size:17 final size:17
Alignment explanation
Indices: 24969651--24969688 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
24969641 GTCGACAACG
*
24969651 AAATATTAATAATGATA
1 AAATATTAATAATAATA
24969668 AAATATTAAATAA-AATA
1 AAATATT-AATAATAATA
24969685 AAAT
1 AAAT
24969689 TTGATTAACG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (17 bp):
AAATATTAATAATAATA
Found at i:24970085 original size:31 final size:30
Alignment explanation
Indices: 24970044--24970115 Score: 90
Period size: 31 Copynumber: 2.3 Consensus size: 30
24970034 TCAATTATAT
* * *
24970044 TTTTAATTTAATCATTAATATTTTAAATTAA
1 TTTTATTTTAATCACTAACATTTTAAATT-A
*
24970075 TTTTATTTTAATCACTCACATTTTAAATTA
1 TTTTATTTTAATCACTAACATTTTAAATTA
24970105 TTTCTATTTTA
1 TTT-TATTTTA
24970116 GCAACCCTCC
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
30 4 0.11
31 32 0.89
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.57
Consensus pattern (30 bp):
TTTTATTTTAATCACTAACATTTTAAATTA
Found at i:24971413 original size:22 final size:22
Alignment explanation
Indices: 24971385--24971431 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
24971375 ATTACCATAT
24971385 ATATATATGCATAGATAAATAG
1 ATATATATGCATAGATAAATAG
24971407 ATATATATGCATAGATAAATAG
1 ATATATATGCATAGATAAATAG
24971429 ATA
1 ATA
24971432 AATAGATAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.51, C:0.04, G:0.13, T:0.32
Consensus pattern (22 bp):
ATATATATGCATAGATAAATAG
Found at i:24982094 original size:16 final size:16
Alignment explanation
Indices: 24982073--24982103 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
24982063 CATTTTATTT
*
24982073 ATATTAGGATAATTAA
1 ATATTAAGATAATTAA
24982089 ATATTAAGATAATTA
1 ATATTAAGATAATTA
24982104 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.39
Consensus pattern (16 bp):
ATATTAAGATAATTAA
Found at i:24982132 original size:28 final size:27
Alignment explanation
Indices: 24982069--24982133 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 27
24982059 ACTCCATTTT
24982069 ATTTATATTAGGATAATTAAATATTAAG
1 ATTT-TATTAGGATAATTAAATATTAAG
* * * *
24982097 ATAATTATTAGGATTATTTAAATTTTAGG
1 AT-TTTATTAGGA-TAATTAAATATTAAG
24982126 ATTTTATT
1 ATTTTATT
24982134 TTAATTATCT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
28 15 0.50
29 15 0.50
ACGTcount: A:0.40, C:0.00, G:0.11, T:0.49
Consensus pattern (27 bp):
ATTTTATTAGGATAATTAAATATTAAG
Found at i:24982148 original size:10 final size:10
Alignment explanation
Indices: 24982129--24982160 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
24982119 TTTTAGGATT
24982129 TTAT-TTTAA
1 TTATCTTTAA
24982138 TTATCTTTAA
1 TTATCTTTAA
24982148 TTATCTTTAA
1 TTATCTTTAA
24982158 TTA
1 TTA
24982161 AATGTATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:24986893 original size:10 final size:10
Alignment explanation
Indices: 24986872--24986903 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
24986862 AAATTCTATT
24986872 AAAAAAAG--
1 AAAAAAAGAA
24986880 AAAAAAAGAA
1 AAAAAAAGAA
24986890 AAAAAAAGAA
1 AAAAAAAGAA
24986900 AAAA
1 AAAA
24986904 GTCATATTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 8 0.36
10 14 0.64
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (10 bp):
AAAAAAAGAA
Found at i:24987494 original size:16 final size:16
Alignment explanation
Indices: 24987473--24987503 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
24987463 CATTTTATTT
*
24987473 ATATTAGGATAATTAA
1 ATATTAAGATAATTAA
24987489 ATATTAAGATAATTA
1 ATATTAAGATAATTA
24987504 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.39
Consensus pattern (16 bp):
ATATTAAGATAATTAA
Found at i:24987532 original size:28 final size:27
Alignment explanation
Indices: 24987469--24987533 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 27
24987459 ACTCCATTTT
24987469 ATTTATATTAGGATAATTAAATATTAAG
1 ATTT-TATTAGGATAATTAAATATTAAG
* * * *
24987497 ATAATTATTAGGATTATTTAAATTTTAGG
1 AT-TTTATTAGGA-TAATTAAATATTAAG
24987526 ATTTTATT
1 ATTTTATT
24987534 TTAATTATCT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
28 15 0.50
29 15 0.50
ACGTcount: A:0.40, C:0.00, G:0.11, T:0.49
Consensus pattern (27 bp):
ATTTTATTAGGATAATTAAATATTAAG
Found at i:24987548 original size:10 final size:10
Alignment explanation
Indices: 24987529--24987560 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
24987519 TTTTAGGATT
24987529 TTAT-TTTAA
1 TTATCTTTAA
24987538 TTATCTTTAA
1 TTATCTTTAA
24987548 TTATCTTTAA
1 TTATCTTTAA
24987558 TTA
1 TTA
24987561 AATGTATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:24989091 original size:27 final size:27
Alignment explanation
Indices: 24989061--24989118 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
24989051 GATAATTAAG
24989061 TGATAAATTAATAAAACAAAAGGCATT
1 TGATAAATTAATAAAACAAAAGGCATT
**
24989088 TGATGCATTAATAAAACAAAAGGCATT
1 TGATAAATTAATAAAACAAAAGGCATT
24989115 TGAT
1 TGAT
24989119 GCATTCATCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.50, C:0.09, G:0.14, T:0.28
Consensus pattern (27 bp):
TGATAAATTAATAAAACAAAAGGCATT
Found at i:24989119 original size:27 final size:27
Alignment explanation
Indices: 24989067--24989123 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
24989057 TAAGTGATAA
24989067 ATTAATAAAACAAAAGGCATTTGATGC
1 ATTAATAAAACAAAAGGCATTTGATGC
24989094 ATTAATAAAACAAAAGGCATTTGATGC
1 ATTAATAAAACAAAAGGCATTTGATGC
24989121 ATT
1 ATT
24989124 CATCTTCTCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.47, C:0.11, G:0.14, T:0.28
Consensus pattern (27 bp):
ATTAATAAAACAAAAGGCATTTGATGC
Found at i:24990079 original size:17 final size:19
Alignment explanation
Indices: 24990037--24990080 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
24990027 ATGAAATTTT
*
24990037 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
24990056 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
24990074 AA-TATTA
1 AATTATTA
24990081 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:24991728 original size:21 final size:21
Alignment explanation
Indices: 24991685--24991728 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
24991675 ATACGGGTAG
* *
24991685 ATAAAAAAATATGTATAATAT
1 ATAAAAAAATAGGAATAATAT
24991706 ATAAAAAAATAGGCAATAA-AT
1 ATAAAAAAATAGG-AATAATAT
24991727 AT
1 AT
24991729 GTTCTATTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.64, C:0.02, G:0.07, T:0.27
Consensus pattern (21 bp):
ATAAAAAAATAGGAATAATAT
Found at i:24996763 original size:40 final size:40
Alignment explanation
Indices: 24996708--24996848 Score: 214
Period size: 40 Copynumber: 3.5 Consensus size: 40
24996698 ATATTTGATG
*
24996708 TTGTATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAA
1 TTGTATCCGAGCTTAAAGACCCGCAGGCTATATGCTGGAA
24996748 TTGTATCCGAGCTTAAAGACCCGCAGGCTATATGCTGGAA
1 TTGTATCCGAGCTTAAAGACCCGCAGGCTATATGCTGGAA
* *
24996788 TTGTATCCGAGCATAAAGACCCGCAGGCT-TCGTGCTGGAA
1 TTGTATCCGAGCTTAAAGACCCGCAGGCTAT-ATGCTGGAA
* *
24996828 TGGTATCCG-GGTTAAAGACCC
1 TTGTATCCGAGCTTAAAGACCC
24996849 ATAGGCTTGC
Statistics
Matches: 94, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
39 11 0.12
40 83 0.88
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TTGTATCCGAGCTTAAAGACCCGCAGGCTATATGCTGGAA
Found at i:24998925 original size:17 final size:19
Alignment explanation
Indices: 24998883--24998926 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
24998873 ATGAAATTTT
*
24998883 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
24998902 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
24998920 AA-TATTA
1 AATTATTA
24998927 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:25007372 original size:31 final size:33
Alignment explanation
Indices: 25007333--25007401 Score: 106
Period size: 32 Copynumber: 2.2 Consensus size: 33
25007323 CTTAACCTTA
*
25007333 GTTTTAAGGAT-AAAAGGACCTTGTAAAG-TTT
1 GTTTTAAGGATAAAAAAGACCTTGTAAAGATTT
*
25007364 TTTTTAAGGATAAAAAAGACCTTGTAAAGATTT
1 GTTTTAAGGATAAAAAAGACCTTGTAAAGATTT
25007397 GTTTT
1 GTTTT
25007402 GTGTAAAAGT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
31 10 0.30
32 16 0.48
33 7 0.21
ACGTcount: A:0.36, C:0.06, G:0.19, T:0.39
Consensus pattern (33 bp):
GTTTTAAGGATAAAAAAGACCTTGTAAAGATTT
Found at i:25013979 original size:14 final size:14
Alignment explanation
Indices: 25013960--25013988 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
25013950 TAACATTTTT
25013960 GGAAATGGACATAA
1 GGAAATGGACATAA
25013974 GGAAATGGACATAA
1 GGAAATGGACATAA
25013988 G
1 G
25013989 TATATGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.48, C:0.07, G:0.31, T:0.14
Consensus pattern (14 bp):
GGAAATGGACATAA
Found at i:25016051 original size:31 final size:31
Alignment explanation
Indices: 25016006--25016066 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
25015996 TGGTTGTGGG
*
25016006 CGTGTGGGCCCATACGGGCACATCACACGGT
1 CGTGTGAGCCCATACGGGCACATCACACGGT
*
25016037 CGTGTGAGCTCATACGGGCACATCACACGG
1 CGTGTGAGCCCATACGGGCACATCACACGG
25016067 ATGTGTAGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.21, C:0.31, G:0.31, T:0.16
Consensus pattern (31 bp):
CGTGTGAGCCCATACGGGCACATCACACGGT
Found at i:25016579 original size:6 final size:6
Alignment explanation
Indices: 25016568--25016601 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
25016558 CTGTTTTTGT
*
25016568 AATCTG AATCTG AATCTG GATCTG AATCTG AATC
1 AATCTG AATCTG AATCTG AATCTG AATCTG AATC
25016602 AAAATATGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (6 bp):
AATCTG
Found at i:25020433 original size:103 final size:103
Alignment explanation
Indices: 25020245--25020436 Score: 278
Period size: 103 Copynumber: 1.9 Consensus size: 103
25020235 TGTGTCTTGG
* *
25020245 CCGTGTAACTCACTGTTTGTGGAGTAAAACCACACGGCCAGGGACACAAGCGTGTACCCAAGCCG
1 CCGTGTAACTCACTGTTTGTGGAATAAAACCACACAGCCAGGGACACAAGCGTGTACCCAAGCCG
* **
25020310 TGTGAGTCACACTGGGAGGAACATAGACATGTGTCCAA
66 TGTAAGTCACACTGACAGGAACATAGACATGTGTCCAA
** * *
25020348 CCGTGTAACTCACT-TTATGTGGAATAAAACCACACAGCCAGGGACACGGGCGTGTACCTAGGCC
1 CCGTGTAACTCACTGTT-TGTGGAATAAAACCACACAGCCAGGGACACAAGCGTGTACCCAAGCC
*
25020412 GTGTAAGTCACAGTGACAGGAACAT
65 GTGTAAGTCACACTGACAGGAACAT
25020437 GGGCGTGTGC
Statistics
Matches: 78, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
102 2 0.03
103 76 0.97
ACGTcount: A:0.30, C:0.25, G:0.27, T:0.19
Consensus pattern (103 bp):
CCGTGTAACTCACTGTTTGTGGAATAAAACCACACAGCCAGGGACACAAGCGTGTACCCAAGCCG
TGTAAGTCACACTGACAGGAACATAGACATGTGTCCAA
Found at i:25023526 original size:16 final size:16
Alignment explanation
Indices: 25023505--25023535 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
25023495 TTAATTATTA
*
25023505 TGTATTTTGTATTTTT
1 TGTATTTTATATTTTT
25023521 TGTATTTTATATTTT
1 TGTATTTTATATTTT
25023536 GCATGCATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.10, T:0.74
Consensus pattern (16 bp):
TGTATTTTATATTTTT
Found at i:25028596 original size:37 final size:36
Alignment explanation
Indices: 25028543--25028618 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 36
25028533 ATTCCAAAAA
*
25028543 TAATATTATTTTAATAGT-TTAATATTAAATTTAAT-T
1 TAATATTATCTTAATAGTATT-ATATT-AATTTAATAT
*
25028579 TAATATTTATCTTAATAGTATTTTATTAATTTAATAT
1 TAATA-TTATCTTAATAGTATTATATTAATTTAATAT
25028616 TAA
1 TAA
25028619 AGTGATTAAG
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
36 13 0.37
37 20 0.57
38 2 0.06
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.55
Consensus pattern (36 bp):
TAATATTATCTTAATAGTATTATATTAATTTAATAT
Found at i:25028618 original size:11 final size:11
Alignment explanation
Indices: 25028543--25028618 Score: 52
Period size: 11 Copynumber: 6.8 Consensus size: 11
25028533 ATTCCAAAAA
*
25028543 TAATATTATTT
1 TAATATTAATT
25028554 TAATAGTTTAATAT
1 TAATA--TTAAT-T
25028568 TAA-ATTTAATT
1 TAATA-TTAATT
*
25028579 TAATATTTATCT
1 TAATATTAAT-T
*
25028591 TAATAGT-ATT
1 TAATATTAATT
25028601 T--TATTAATT
1 TAATATTAATT
25028610 TAATATTAA
1 TAATATTAA
25028619 AGTGATTAAG
Statistics
Matches: 53, Mismatches: 4, Indels: 16
0.73 0.05 0.22
Matches are distributed among these distances:
8 3 0.06
9 4 0.08
10 2 0.04
11 21 0.40
12 14 0.26
13 5 0.09
14 4 0.08
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.55
Consensus pattern (11 bp):
TAATATTAATT
Found at i:25030574 original size:60 final size:61
Alignment explanation
Indices: 25030475--25030591 Score: 209
Period size: 60 Copynumber: 1.9 Consensus size: 61
25030465 CTTCTTTTGT
* *
25030475 TTGAGGTTTTCTGGTTATAAATTAAAACATCTATTTCTTATCTTAACAACTTACTTTTTTC
1 TTGAGGTTTTCTGCTTATAAATTAAAACATCTATCTCTTATCTTAACAACTTACTTTTTTC
25030536 TTGAGGTTTTCTGCTTATAAATT-AAACATCTATCTCTTATCTTAACAACTTACTTT
1 TTGAGGTTTTCTGCTTATAAATTAAAACATCTATCTCTTATCTTAACAACTTACTTT
25030592 GAAACTTGTC
Statistics
Matches: 54, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
60 32 0.59
61 22 0.41
ACGTcount: A:0.28, C:0.16, G:0.08, T:0.48
Consensus pattern (61 bp):
TTGAGGTTTTCTGCTTATAAATTAAAACATCTATCTCTTATCTTAACAACTTACTTTTTTC
Found at i:25031669 original size:5 final size:5
Alignment explanation
Indices: 25031659--25031686 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
25031649 ATTAGGTGTG
25031659 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
25031687 GAACACACAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:25036111 original size:5 final size:5
Alignment explanation
Indices: 25036101--25036129 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
25036091 ACCAGTTTTT
25036101 TAAAA TAAAA TAAAA TAAAA TAAAA TAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAA
25036130 GAATACACAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
TAAAA
Found at i:25037067 original size:28 final size:28
Alignment explanation
Indices: 25037035--25037088 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
25037025 TGTGTTGATG
*
25037035 AAGCTTCAA-CAAACCAAAAAAATGGAGA
1 AAGCTTCAAGAAAACC-AAAAAATGGAGA
*
25037063 AAGCTTCAAGAAAACCCAAAAATGGA
1 AAGCTTCAAGAAAACCAAAAAATGGA
25037089 TAGAACTTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
28 18 0.78
29 5 0.22
ACGTcount: A:0.56, C:0.19, G:0.15, T:0.11
Consensus pattern (28 bp):
AAGCTTCAAGAAAACCAAAAAATGGAGA
Found at i:25040713 original size:22 final size:22
Alignment explanation
Indices: 25040685--25040729 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
25040675 AAAATACGTG
25040685 TTAGAAACAAGTTGGGACTAAA
1 TTAGAAACAAGTTGGGACTAAA
25040707 TTAGAAACAAGTTGGGACTAAA
1 TTAGAAACAAGTTGGGACTAAA
25040729 T
1 T
25040730 CGGAAACCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.44, C:0.09, G:0.22, T:0.24
Consensus pattern (22 bp):
TTAGAAACAAGTTGGGACTAAA
Found at i:25040735 original size:22 final size:22
Alignment explanation
Indices: 25040687--25040736 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 22
25040677 AATACGTGTT
*
25040687 AGAAACAAGTTGGGACTAAATT
1 AGAAACAAGTTGGGACTAAATC
25040709 AGAAACAAGTTGGGACTAAATC
1 AGAAACAAGTTGGGACTAAATC
*
25040731 GGAAAC
1 AGAAAC
25040737 CCAGAGAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.46, C:0.12, G:0.24, T:0.18
Consensus pattern (22 bp):
AGAAACAAGTTGGGACTAAATC
Found at i:25042109 original size:41 final size:41
Alignment explanation
Indices: 25042062--25042145 Score: 159
Period size: 41 Copynumber: 2.0 Consensus size: 41
25042052 AACCATTTTG
*
25042062 AATACCATTGGATACCCTGGATAGCTCATACATAGTGTGCT
1 AATACCATTGGATACCCAGGATAGCTCATACATAGTGTGCT
25042103 AATACCATTGGATACCCAGGATAGCTCATACATAGTGTGCT
1 AATACCATTGGATACCCAGGATAGCTCATACATAGTGTGCT
25042144 AA
1 AA
25042146 ATTATATAAC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.27
Consensus pattern (41 bp):
AATACCATTGGATACCCAGGATAGCTCATACATAGTGTGCT
Found at i:25045061 original size:23 final size:22
Alignment explanation
Indices: 25045034--25045085 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
25045024 ATTACTATTA
25045034 TCCCCAAAAGAGATAGTCAAGTT
1 TCCCCAAAAG-GATAGTCAAGTT
** *
25045057 TCCCCAATTGGTTAGTCAAGTT
1 TCCCCAAAAGGATAGTCAAGTT
25045079 TCCCCAA
1 TCCCCAA
25045086 TTGGTTATTG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 18 0.69
23 8 0.31
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (22 bp):
TCCCCAAAAGGATAGTCAAGTT
Found at i:25045075 original size:22 final size:22
Alignment explanation
Indices: 25045047--25045092 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
25045037 CCAAAAGAGA
25045047 TAGTCAAGTTTCCCCAATTGGT
1 TAGTCAAGTTTCCCCAATTGGT
25045069 TAGTCAAGTTTCCCCAATTGGT
1 TAGTCAAGTTTCCCCAATTGGT
25045091 TA
1 TA
25045093 TTGACCATCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.24, C:0.22, G:0.17, T:0.37
Consensus pattern (22 bp):
TAGTCAAGTTTCCCCAATTGGT
Found at i:25053734 original size:19 final size:19
Alignment explanation
Indices: 25053700--25053778 Score: 108
Period size: 19 Copynumber: 4.2 Consensus size: 19
25053690 AGGTTACAAA
25053700 ATCATATCTTCAAGATTGCAT
1 ATCATATC--CAAGATTGCAT
25053721 ATCATATCCAAGATTG--T
1 ATCATATCCAAGATTGCAT
*
25053738 ATCATATCTAAGATTGCAT
1 ATCATATCCAAGATTGCAT
*
25053757 ATCATATCTAAGATTGCAT
1 ATCATATCCAAGATTGCAT
25053776 ATC
1 ATC
25053779 CTTAAATATT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
17 16 0.29
19 31 0.56
21 8 0.15
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (19 bp):
ATCATATCCAAGATTGCAT
Found at i:25053755 original size:36 final size:38
Alignment explanation
Indices: 25053700--25053772 Score: 123
Period size: 36 Copynumber: 2.0 Consensus size: 38
25053690 AGGTTACAAA
25053700 ATCATATCTTCAAGATTGCATATCATATCCAAGATTGT
1 ATCATATCTTCAAGATTGCATATCATATCCAAGATTGT
*
25053738 ATCATATC-T-AAGATTGCATATCATATCTAAGATTG
1 ATCATATCTTCAAGATTGCATATCATATCCAAGATTG
25053773 CATATCCTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
36 25 0.74
37 1 0.03
38 8 0.24
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.37
Consensus pattern (38 bp):
ATCATATCTTCAAGATTGCATATCATATCCAAGATTGT
Found at i:25054461 original size:87 final size:89
Alignment explanation
Indices: 25054359--25054563 Score: 290
Period size: 87 Copynumber: 2.3 Consensus size: 89
25054349 GCACAGGAAT
* * *
25054359 GTCAGATTTGCTATGTCTTCGATCTGTTCCCTGTAAACACAGGGATGCCAAATCATCTTGGATCT
1 GTCAGATCTGCTATGTCTTCGATCTGCTCCCTGTAAACACAAGGATGCCAAATCATCTTGGATCT
* *
25054424 GTTTC-A-GTGTAAACA-CCTGAAG
66 GCTTCAATGTGAAAACATCC-GAAG
* * * *
25054446 GTCAGATCTACTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCTAAATCATCTTGGATCT
1 GTCAGATCTGCTATGTCTTCGATCTGCTCCCTGTAAACACAAGGATGCCAAATCATCTTGGATCT
*
25054511 GCTTCAATGTGAAAATATCCGAAG
66 GCTTCAATGTGAAAACATCCGAAG
25054535 GTCAGATCTGCTATGTCTTCGATCTGCTC
1 GTCAGATCTGCTATGTCTTCGATCTGCTC
25054564 TCCGTCAAAT
Statistics
Matches: 103, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
87 62 0.60
88 1 0.01
89 38 0.37
90 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (89 bp):
GTCAGATCTGCTATGTCTTCGATCTGCTCCCTGTAAACACAAGGATGCCAAATCATCTTGGATCT
GCTTCAATGTGAAAACATCCGAAG
Found at i:25054780 original size:84 final size:84
Alignment explanation
Indices: 25054682--25055137 Score: 627
Period size: 84 Copynumber: 5.5 Consensus size: 84
25054672 TCTGCTATAC
* *
25054682 TTTAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCGCATCTTCGATCTACTCCACTACTGCTTA
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGCATCTTCGATCTGCTCCACTACTGCTTA
*
25054747 GGAAGATAAGATCTGCAAA
66 GGGAGATAAGATCTGCAAA
* * * ** * **
25054766 TTTAACTTATTACCCTACTGCTTAGTGGATTAAGGCAAGTCGCCGTCGATCTGCTCCGTTACTGC
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGC--G-CATCTTCGATCTGCTCCACTACTGC
25054831 TTAGGGAGATAAGATCTGC---
63 TTAGGGAGATAAGATCTGCAAA
* * * *
25054850 --GAACCTGTTACCCTACTGTTTAGGGGATTAAGGTG-AGTCTTCGATCTGCTCCACTACTACTT
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGCA-TCTTCGATCTGCTCCACTACTGCTT
*
25054912 AGGGAGATAAGATCTACAAA
65 AGGGAGATAAGATCTGCAAA
* ** *
25054932 TTTAACCTGTTACCCTACCGCTTAGGGGATTAAGGCGGGTCTTCGATCTGCTCTACTACTGCTTA
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGCATCTTCGATCTGCTCCACTACTGCTTA
25054997 GGGAGATAAGATCTGCAAA
66 GGGAGATAAGATCTGCAAA
** *
25055016 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCAAATCTTCGATCTGCTCCACTACTGTTTA
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGCATCTTCGATCTGCTCCACTACTGCTTA
25055081 GGGAGATAAGATCTGCAAA
66 GGGAGATAAGATCTGCAAA
25055100 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGC
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGC
25055138 TGAATTTTGT
Statistics
Matches: 322, Mismatches: 40, Indels: 20
0.84 0.10 0.05
Matches are distributed among these distances:
79 36 0.11
80 1 0.00
82 28 0.09
84 219 0.68
86 1 0.00
87 37 0.11
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.30
Consensus pattern (84 bp):
TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGCATCTTCGATCTGCTCCACTACTGCTTA
GGGAGATAAGATCTGCAAA
Done.