Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 77 of 284
Found at i:26019103 original size:84 final size:85
Alignment explanation
Indices: 26018974--26019129 Score: 210
Period size: 84 Copynumber: 1.8 Consensus size: 85
26018964 CCAATGATCC
* * * *
26018974 TATCTCCTTGAAGTTGCAGTGGAGCGGATTAAAACCACATATCTTATCTCTCTGAAGTTGCAGAG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAACCACATATCTTATCTCCCTGAAGTTGCAGAG
26019039 -AGCAGATCGCATCTAATCT
66 AAGCAGATCGCATCTAATCT
* *
26019058 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCA-A-GTCTTATCTCCCTGAAGTTGCAG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAA--AACCACATATCTTATCTCCCTGAAGTTGCAG
*
26019121 TGAAGCAGA
64 AGAAGCAGA
26019130 CTGAAGACGG
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
84 51 0.82
85 7 0.11
86 4 0.06
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (85 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAACCACATATCTTATCTCCCTGAAGTTGCAGAG
AAGCAGATCGCATCTAATCT
Found at i:26019164 original size:45 final size:44
Alignment explanation
Indices: 26018974--26019346 Score: 252
Period size: 44 Copynumber: 8.6 Consensus size: 44
26018964 CCAATGATCC
* * * * *
26018974 TATCTCCTTGAAGTTGCAGTGGAGCGGATTAAAACCA-CATATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGA-CAGCAAATCT
* * * * *
26019018 TATCTCTCTGAAGTTGCAG-AGAGCAGA-T-CG-CATCTAATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGACAGCAAATCT
*
26019058 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTA-AGCAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-ACAGCAAATCT
* *
26019102 TATCTCCCTGAAGTTGCAGTGAAGCAGACTGAAGACGGCAAATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGACAGCAAATCT
* ** * * * *
26019147 TATCTCCCTGAAATTGCAG-AAAGCAGA-T-CG-CATCTAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGACAGCAAATCT
* * ** *
26019187 TATCTCCCTGAAGTTGCAGTGGGGTAGACTGAAGATGGCAAACCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGACAGCAAATCT
** * * *
26019232 TATCTCCCTGAAGTTGCAGTGGAGCAGGTTAA-AGCCG-ACAGTCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGA-CAGCA-AATCT
* * * * *
26019276 TATCTCCTTGAAGTTGCAGTGGAGCGGATTAAAATCA-CAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGA-CAGCAAATCT
* *
26019320 TATCTCTCTGAAGTTGCAG-AGAGCAGA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA
26019347 TCGAATCTAG
Statistics
Matches: 255, Mismatches: 57, Indels: 35
0.73 0.16 0.10
Matches are distributed among these distances:
39 2 0.01
40 47 0.18
41 12 0.05
42 3 0.01
43 16 0.06
44 114 0.45
45 61 0.24
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (44 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGACAGCAAATCT
Found at i:26019198 original size:85 final size:85
Alignment explanation
Indices: 26019053--26019383 Score: 294
Period size: 85 Copynumber: 3.8 Consensus size: 85
26019043 GATCGCATCT
* * * * *
26019053 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCTCCCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAG-AGAGCAGA-T-CG-CATCTAGTCTTATCTCCCTGAAGTTG
*
26019118 CAGTGAAGCAGACTGAAGACGGCA
62 CAGTGGAGCAGACTGAAGACGGCA
* *
26019142 AATCTTATCTCCCTGAAATTGCAGAAAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGT
1 AATCTTATCTCCCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGT
* * *
26019207 GGGGTAGACTGAAGATGGCA
66 GGAGCAGACTGAAGACGGCA
* * ** * *
26019227 AACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGCCGA-C-AGTCCTATCTCCTTGAAGT
1 AATCTTATCTCCCTGAAGTTGCAG-AGAGCA-G--ATCG-C-ATCTAGTCTTATCTCCCTGAAGT
* * * *
26019290 TGCAGTGGAGCGGA-TTAAAATC-ACA
60 TGCAGTGGAGCAGACTGAAGA-CGGCA
* * * *
26019315 GATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGAATCTAGTCTTATCTCCCT-AACATTGCAG
1 AATCTTATCTCCCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAA-GTTGCAG
26019379 TGGAG
65 TGGAG
26019384 TAAACTGCAG
Statistics
Matches: 196, Mismatches: 36, Indels: 25
0.76 0.14 0.10
Matches are distributed among these distances:
82 1 0.01
83 3 0.02
84 25 0.13
85 65 0.33
86 6 0.03
87 7 0.04
88 33 0.17
89 53 0.27
90 2 0.01
91 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (85 bp):
AATCTTATCTCCCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGT
GGAGCAGACTGAAGACGGCA
Found at i:26019280 original size:129 final size:128
Alignment explanation
Indices: 26018974--26019294 Score: 396
Period size: 129 Copynumber: 2.5 Consensus size: 128
26018964 CCAATGATCC
* * *
26018974 TATCTCCTTGAAGTTGCAGTGGAGC-GGATTAAAACC-ACATATCTTATCTCTCTGAAGTTGCAG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGG-TTAAAGCCGACA-ATCTTATCTCCCTGAAGTTGCAG
* **
26019037 AGAGCAGATCGCATCTAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCT
64 AAAGCAGATCGCATCTAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAACCT
* ** * * * *
26019102 TATCTCCCTGAAGTTGCAGTGAAGCAGACTGAAGACGGCAAATCTTATCTCCCTGAAATTGCAGA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGCCGAC-AATCTTATCTCCCTGAAGTTGCAGA
* * * *
26019167 AAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGGGTAGACTGAAG-ATGGCAAACC
65 AAGCAGATCGCATCTAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGTA-AGCAAACC
26019231 T
128 T
* * *
26019232 TATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGCCGACAGTCCTATCTCCTTGAAGTTGCAG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGCCGACAATCTTATCTCCCTGAAGTTGCAG
26019295 TGGAGCGGAT
Statistics
Matches: 161, Mismatches: 27, Indels: 9
0.82 0.14 0.05
Matches are distributed among these distances:
128 27 0.17
129 91 0.57
130 43 0.27
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.26
Consensus pattern (128 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGCCGACAATCTTATCTCCCTGAAGTTGCAGAA
AGCAGATCGCATCTAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAACCT
Found at i:26019379 original size:173 final size:173
Alignment explanation
Indices: 26019056--26019390 Score: 428
Period size: 173 Copynumber: 1.9 Consensus size: 173
26019046 CGCATCTAAT
*
26019056 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCTCCCTGAAGTTGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCCTATCTCCCTGAAGTTGCAG
* * *
26019121 TGAAGCAGACTGAAGACGGCAAATCTTATCTCCCTGAAATTGCAGAAAGCAGATCGCATCTAGTC
65 TGAAGCAGACTGAAAACGACAAATCTTATCTCCCTGAAATTGCAGAAAGCAGATCGAATCTAGTC
* * *
26019186 TTATCTCCCTGAAGTTGCAGTGGGGTAGACTGAAGATGGCAAAC
130 TTATCTCCCTGAAATTGCAGTGGAGTAAACTGAAGATGGCAAAC
* * *
26019230 CTTATCTCCCTGAAGTTGCAGTGGAGCAG-GTTA-AAGCCGACAGTCCTATCTCCTTGAAGTTGC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A-AGTCCTATCTCCCTGAAGTTGC
* * * * * * *
26019293 AGTGGAGCGGA-TTAAAATC-ACAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGAATCTA
63 AGTGAAGCAGACTGAAAA-CGACAAATCTTATCTCCCTGAAATTGCAGAAAGCAGATCGAATCTA
26019356 GTCTTATCTCCCT-AACATTGCAGTGGAGTAAACTG
127 GTCTTATCTCCCTGAA-ATTGCAGTGGAGTAAACTG
26019391 CAGCACTAGT
Statistics
Matches: 139, Mismatches: 17, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
171 3 0.02
172 3 0.02
173 74 0.53
174 59 0.42
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (173 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCCTATCTCCCTGAAGTTGCAGT
GAAGCAGACTGAAAACGACAAATCTTATCTCCCTGAAATTGCAGAAAGCAGATCGAATCTAGTCT
TATCTCCCTGAAATTGCAGTGGAGTAAACTGAAGATGGCAAAC
Found at i:26021169 original size:20 final size:18
Alignment explanation
Indices: 26021134--26021170 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
26021124 GTACCTTTTA
26021134 TTCTTTATTTTTTATTAG
1 TTCTTTATTTTTTATTAG
26021152 TTCTTTCATTTGTTTATTA
1 TTCTTT-ATTT-TTTATTA
26021171 ATTGGTGTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 4 0.24
20 7 0.41
ACGTcount: A:0.16, C:0.08, G:0.05, T:0.70
Consensus pattern (18 bp):
TTCTTTATTTTTTATTAG
Found at i:26026565 original size:54 final size:53
Alignment explanation
Indices: 26026505--26026636 Score: 194
Period size: 54 Copynumber: 2.4 Consensus size: 53
26026495 GGGTGTGGCT
* *
26026505 GTGTGGGTCACACGGTGTAGGCCAAGTTTGGG-TGTGTGGGTTTTGGGATAGGCC
1 GTGTGGGCCACACGG-GTAGGCCAAGTTTGGGCT-TGTGGGTTTTGGGACAGGCC
*
26026559 GTGTGGGCCACACGGGATAGGCCAAGTTTGGGCTTGTGGGTTTTGGGCCAGGCC
1 GTGTGGGCCACACGGG-TAGGCCAAGTTTGGGCTTGTGGGTTTTGGGACAGGCC
26026613 GTGTGGGCCACACGGGTAAGGCCA
1 GTGTGGGCCACACGGGT-AGGCCA
26026637 GTCCGGGCAT
Statistics
Matches: 72, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
53 2 0.03
54 69 0.96
55 1 0.01
ACGTcount: A:0.14, C:0.18, G:0.43, T:0.24
Consensus pattern (53 bp):
GTGTGGGCCACACGGGTAGGCCAAGTTTGGGCTTGTGGGTTTTGGGACAGGCC
Found at i:26027295 original size:20 final size:19
Alignment explanation
Indices: 26027266--26027309 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
26027256 GTTCATAGAC
*
26027266 TTTTTAAAATTATAGTTATTA
1 TTTTTAAAATTA-AG-AATTA
26027287 TTTTT-AAATTAAGAATTA
1 TTTTTAAAATTAAGAATTA
26027305 TTTTT
1 TTTTT
26027310 TGAATTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 9 0.41
19 2 0.09
20 6 0.27
21 5 0.23
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (19 bp):
TTTTTAAAATTAAGAATTA
Found at i:26034120 original size:12 final size:12
Alignment explanation
Indices: 26034103--26034127 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26034093 AATTTTGTAA
26034103 TAATTGGACTCT
1 TAATTGGACTCT
26034115 TAATTGGACTCT
1 TAATTGGACTCT
26034127 T
1 T
26034128 CGGACTCTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.16, G:0.16, T:0.44
Consensus pattern (12 bp):
TAATTGGACTCT
Found at i:26038350 original size:65 final size:65
Alignment explanation
Indices: 26038259--26038388 Score: 217
Period size: 65 Copynumber: 2.0 Consensus size: 65
26038249 TCCTCTTTGA
*
26038259 AGGGATTTTTTCACGTTAAATTTGTGTGTTCAATTTCTCAATTTCTTCCGCTATTTTTTACTTGT
1 AGGGATTTTTTCACGTTAAATTTGTGTGTTCAATTTCTCAATTT-TTCCGCTATATTTTACTTGT
26038324 T
65 T
* *
26038325 AGGGATTTTTT-ATGTTAAATTTGTGTGTTCAATTTCTCAATTTTTTCGCTATATTTTACTTGTT
1 AGGGATTTTTTCACGTTAAATTTGTGTGTTCAATTTCTCAATTTTTCCGCTATATTTTACTTGTT
26038389 GCTTAATCAG
Statistics
Matches: 61, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
64 19 0.31
65 31 0.51
66 11 0.18
ACGTcount: A:0.19, C:0.12, G:0.14, T:0.55
Consensus pattern (65 bp):
AGGGATTTTTTCACGTTAAATTTGTGTGTTCAATTTCTCAATTTTTCCGCTATATTTTACTTGTT
Found at i:26038435 original size:13 final size:13
Alignment explanation
Indices: 26038417--26038442 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26038407 CTAACAGTTA
26038417 ACTTATATATTCT
1 ACTTATATATTCT
26038430 ACTTATATATTCT
1 ACTTATATATTCT
26038443 TAATTTTATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.00, T:0.54
Consensus pattern (13 bp):
ACTTATATATTCT
Found at i:26040671 original size:12 final size:12
Alignment explanation
Indices: 26040652--26040691 Score: 62
Period size: 12 Copynumber: 3.3 Consensus size: 12
26040642 TTTAACCTTG
26040652 TATTATTCTTAT
1 TATTATTCTTAT
*
26040664 TCTTATTCTTAT
1 TATTATTCTTAT
*
26040676 TATTATTATTAT
1 TATTATTCTTAT
26040688 TATT
1 TATT
26040692 TACTCATTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.25, C:0.07, G:0.00, T:0.68
Consensus pattern (12 bp):
TATTATTCTTAT
Found at i:26040680 original size:3 final size:3
Alignment explanation
Indices: 26040652--26040691 Score: 53
Period size: 3 Copynumber: 13.3 Consensus size: 3
26040642 TTTAACCTTG
* * *
26040652 TAT TAT TCT TAT TCT TAT TCT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
26040692 TACTCATTTA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.25, C:0.07, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:26042631 original size:15 final size:16
Alignment explanation
Indices: 26042611--26042650 Score: 55
Period size: 17 Copynumber: 2.5 Consensus size: 16
26042601 TAATTTTTAA
*
26042611 AAGTTATAAAA-ATAT
1 AAGTTATAAAATAAAT
26042626 AAGTTATTAAAATAAAT
1 AAGTTA-TAAAATAAAT
26042643 AAGTTATA
1 AAGTTATA
26042651 TTTTTATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 6 0.27
16 7 0.32
17 9 0.41
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.35
Consensus pattern (16 bp):
AAGTTATAAAATAAAT
Found at i:26047308 original size:24 final size:24
Alignment explanation
Indices: 26047257--26047308 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
26047247 TTCGTAGGTC
* *
26047257 AAATAAATTATGCTAATAAATGCA
1 AAATAAATTATACTAATAAATACA
* *
26047281 AAATATATTATACTAATAAATACT
1 AAATAAATTATACTAATAAATACA
26047305 AAAT
1 AAAT
26047309 CTTCTAAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.56, C:0.08, G:0.04, T:0.33
Consensus pattern (24 bp):
AAATAAATTATACTAATAAATACA
Found at i:26052189 original size:6 final size:6
Alignment explanation
Indices: 26052178--26052204 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
26052168 ATTATTGTCG
26052178 TTGCCA TTGCCA TTGCCA TTGCCA TTG
1 TTGCCA TTGCCA TTGCCA TTGCCA TTG
26052205 TCATCATCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.30, G:0.19, T:0.37
Consensus pattern (6 bp):
TTGCCA
Found at i:26060042 original size:25 final size:25
Alignment explanation
Indices: 26059965--26060044 Score: 106
Period size: 25 Copynumber: 3.2 Consensus size: 25
26059955 GACACACCAT
* * *
26059965 AGCTCTTATGAGCTTACCGCTTCTT
1 AGCTCATATGAGCTTACCGATTCTC
*
26059990 AGCTCGTATGAGCTTACCGATTCTC
1 AGCTCATATGAGCTTACCGATTCTC
* *
26060015 AGCTTATATGAGCTTACCGATTCAC
1 AGCTCATATGAGCTTACCGATTCTC
26060040 AGCTC
1 AGCTC
26060045 GCGAGAGTAT
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 48 1.00
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (25 bp):
AGCTCATATGAGCTTACCGATTCTC
Found at i:26065851 original size:26 final size:26
Alignment explanation
Indices: 26065815--26065873 Score: 91
Period size: 26 Copynumber: 2.3 Consensus size: 26
26065805 GTAAGTGTTT
26065815 TGAAACTGATACATGCTATGATATTC
1 TGAAACTGATACATGCTATGATATTC
* *
26065841 TGAAACTGATATATGTTATGATATTC
1 TGAAACTGATACATGCTATGATATTC
*
26065867 TAAAACT
1 TGAAACT
26065874 ACTGTAGGTA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (26 bp):
TGAAACTGATACATGCTATGATATTC
Found at i:26074015 original size:18 final size:19
Alignment explanation
Indices: 26073992--26074027 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
26073982 TGTATTAGAG
26073992 TATAAAAAA-ATTCGAAAT
1 TATAAAAAAGATTCGAAAT
26074010 TATAAAAAAGATTCGAAA
1 TATAAAAAAGATTCGAAA
26074028 AAAAAGAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.61, C:0.06, G:0.08, T:0.25
Consensus pattern (19 bp):
TATAAAAAAGATTCGAAAT
Found at i:26074090 original size:13 final size:13
Alignment explanation
Indices: 26074074--26074117 Score: 72
Period size: 13 Copynumber: 3.5 Consensus size: 13
26074064 ATTGAAGTTC
26074074 AAAAAAAATTCAA
1 AAAAAAAATTCAA
*
26074087 AAAAGAAATTC-A
1 AAAAAAAATTCAA
26074099 AAAAAAAATTCAA
1 AAAAAAAATTCAA
26074112 AAAAAA
1 AAAAAA
26074118 GTGAGAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
12 11 0.39
13 17 0.61
ACGTcount: A:0.77, C:0.07, G:0.02, T:0.14
Consensus pattern (13 bp):
AAAAAAAATTCAA
Found at i:26075123 original size:12 final size:12
Alignment explanation
Indices: 26075106--26075209 Score: 68
Period size: 12 Copynumber: 8.4 Consensus size: 12
26075096 AAAATGAGTT
26075106 AGAAAAAGAAAGA
1 AGAAAAAGAAA-A
26075119 A-AAAAAGAAAA
1 AGAAAAAGAAAA
*
26075130 AGAAAAAGAAAT
1 AGAAAAAGAAAA
* *
26075142 TGCAAAAGAAAA
1 AGAAAAAGAAAA
*
26075154 AGAAATCA-AAAA
1 AGAAA-AAGAAAA
** *
26075166 AGTGAGAGAAAA
1 AGAAAAAGAAAA
*
26075178 AGAAAATGAAGAAA
1 AGAAAAAG-A-AAA
*
26075192 AGAAAATTGAAAA
1 AGAAAA-AGAAAA
26075205 AGAAA
1 AGAAA
26075210 TTGAGATTGA
Statistics
Matches: 71, Mismatches: 14, Indels: 12
0.73 0.14 0.12
Matches are distributed among these distances:
11 3 0.04
12 45 0.63
13 11 0.15
14 10 0.14
15 2 0.03
ACGTcount: A:0.73, C:0.02, G:0.18, T:0.07
Consensus pattern (12 bp):
AGAAAAAGAAAA
Found at i:26075166 original size:18 final size:18
Alignment explanation
Indices: 26075126--26075167 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
26075116 AGAAAAAAAG
**
26075126 AAAAAGAAAAAGAAATTG
1 AAAAAGAAAAAGAAATCA
*
26075144 CAAAAGAAAAAGAAATCA
1 AAAAAGAAAAAGAAATCA
26075162 AAAAAG
1 AAAAAG
26075168 TGAGAGAAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.74, C:0.05, G:0.14, T:0.07
Consensus pattern (18 bp):
AAAAAGAAAAAGAAATCA
Found at i:26082050 original size:18 final size:18
Alignment explanation
Indices: 26082027--26082073 Score: 94
Period size: 18 Copynumber: 2.6 Consensus size: 18
26082017 GCCCTGCCTT
26082027 AGATTTTGAAACTGTTAA
1 AGATTTTGAAACTGTTAA
26082045 AGATTTTGAAACTGTTAA
1 AGATTTTGAAACTGTTAA
26082063 AGATTTTGAAA
1 AGATTTTGAAA
26082074 GCTGCCATTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.40, C:0.04, G:0.17, T:0.38
Consensus pattern (18 bp):
AGATTTTGAAACTGTTAA
Found at i:26082807 original size:25 final size:25
Alignment explanation
Indices: 26082770--26082885 Score: 135
Period size: 25 Copynumber: 4.6 Consensus size: 25
26082760 GCGGACACAC
*
26082770 CACAGCTCTTATGAGCTTACCGATT
1 CACAGCTCGTATGAGCTTACCGATT
**
26082795 CTTAGCTCGTATGAGCTTACCGATT
1 CACAGCTCGTATGAGCTTACCGATT
* *
26082820 CTCAGCTCGTATAAGCTTACCGATT
1 CACAGCTCGTATGAGCTTACCGATT
* * *
26082845 CACAGCTCGCGA-GAGCATATCGATT
1 CACAGCTCG-TATGAGCTTACCGATT
*
26082870 CATAGCTCGTATGAGC
1 CACAGCTCGTATGAGC
26082886 ATACATGTAC
Statistics
Matches: 77, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
24 1 0.01
25 75 0.97
26 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (25 bp):
CACAGCTCGTATGAGCTTACCGATT
Found at i:26092544 original size:14 final size:13
Alignment explanation
Indices: 26092517--26092554 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
26092507 GGGTAAACAA
*
26092517 TTAATTAAATTAT
1 TTAATTATATTAT
26092530 TTAATTTATATTAT
1 TTAA-TTATATTAT
26092544 TTAATTATATT
1 TTAATTATATT
26092555 GTACATTTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 11 0.48
14 12 0.52
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (13 bp):
TTAATTATATTAT
Found at i:26113997 original size:26 final size:26
Alignment explanation
Indices: 26113968--26114055 Score: 78
Period size: 26 Copynumber: 3.4 Consensus size: 26
26113958 CTACCAATTT
*
26113968 AATTTTTTTATCTTTTTAACCTTTAA
1 AATTATTTTATCTTTTTAACCTTTAA
*
26113994 AATTATTTTA--TTTTAACTACCAATTT--
1 AATTATTTTATCTTTTTA--ACC--TTTAA
*
26114020 AATT-TTTTATCTTTTTAACATTTAA
1 AATTATTTTATCTTTTTAACCTTTAA
26114045 AATTATTTTAT
1 AATTATTTTAT
26114056 TTGTCAAATT
Statistics
Matches: 49, Mismatches: 4, Indels: 18
0.69 0.06 0.25
Matches are distributed among these distances:
23 3 0.06
24 5 0.10
25 11 0.22
26 22 0.45
27 5 0.10
28 3 0.06
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.59
Consensus pattern (26 bp):
AATTATTTTATCTTTTTAACCTTTAA
Found at i:26114031 original size:51 final size:52
Alignment explanation
Indices: 26113940--26114057 Score: 211
Period size: 51 Copynumber: 2.3 Consensus size: 52
26113930 TAATTTTATA
* *
26113940 AAAAATATTTTATTTTAACTACCAATTTAATTTTTTTATCTTTTTAACCTTT
1 AAAATTATTTTATTTTAACTACCAATTTAATTTTTTTATCTTTTTAACATTT
26113992 AAAATTATTTTATTTTAACTACCAATTTAA-TTTTTTATCTTTTTAACATTT
1 AAAATTATTTTATTTTAACTACCAATTTAATTTTTTTATCTTTTTAACATTT
26114043 AAAATTATTTTATTT
1 AAAATTATTTTATTT
26114058 GTCAAATTAT
Statistics
Matches: 64, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
51 35 0.55
52 29 0.45
ACGTcount: A:0.34, C:0.09, G:0.00, T:0.57
Consensus pattern (52 bp):
AAAATTATTTTATTTTAACTACCAATTTAATTTTTTTATCTTTTTAACATTT
Found at i:26114939 original size:16 final size:16
Alignment explanation
Indices: 26114920--26114959 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
26114910 TAAACATTTT
*
26114920 ATAATTTATAAAATTA
1 ATAATTTATAAAAATA
*
26114936 ATAATTAATAAAAATA
1 ATAATTTATAAAAATA
*
26114952 AAAATTTA
1 ATAATTTA
26114960 ATTTAACTCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
ATAATTTATAAAAATA
Found at i:26118408 original size:31 final size:31
Alignment explanation
Indices: 26118373--26118446 Score: 73
Period size: 30 Copynumber: 2.5 Consensus size: 31
26118363 GTTTCAAAAT
26118373 ATTATAAATATAAATTTAA-TATAATTATTTA
1 ATTATAAATATAAATTTAATTATAATT-TTTA
*** *
26118404 ATTATGTTTAT-AATTTAATTTTAATTTTTA
1 ATTATAAATATAAATTTAATTATAATTTTTA
*
26118434 AATATAAA-ATAAA
1 ATTATAAATATAAA
26118447 ACTACTAAAC
Statistics
Matches: 33, Mismatches: 8, Indels: 5
0.72 0.17 0.11
Matches are distributed among these distances:
29 2 0.06
30 17 0.52
31 14 0.42
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (31 bp):
ATTATAAATATAAATTTAATTATAATTTTTA
Found at i:26122627 original size:8 final size:8
Alignment explanation
Indices: 26122614--26122662 Score: 75
Period size: 8 Copynumber: 6.4 Consensus size: 8
26122604 TTCTTTATTT
26122614 TTATTTTA
1 TTATTTTA
26122622 TTATTTTA
1 TTATTTTA
26122630 TTATTTTA
1 TTATTTTA
26122638 TTA-TTTA
1 TTATTTTA
*
26122645 TTATTTTG
1 TTATTTTA
26122653 TTA-TTTA
1 TTATTTTA
26122660 TTA
1 TTA
26122663 CTATATTTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
7 13 0.34
8 25 0.66
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.73
Consensus pattern (8 bp):
TTATTTTA
Found at i:26122644 original size:23 final size:22
Alignment explanation
Indices: 26122608--26122662 Score: 76
Period size: 23 Copynumber: 2.5 Consensus size: 22
26122598 TTATTTTTCT
26122608 TTATTT-TTATTTTATTATTTTA
1 TTATTTATTA-TTTATTATTTTA
*
26122630 TTATTTTATTATTTATTATTTTG
1 TTA-TTTATTATTTATTATTTTA
26122653 TTATTTATTA
1 TTATTTATTA
26122663 CTATATTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
22 10 0.33
23 17 0.57
24 3 0.10
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.75
Consensus pattern (22 bp):
TTATTTATTATTTATTATTTTA
Found at i:26122647 original size:15 final size:15
Alignment explanation
Indices: 26122608--26122662 Score: 85
Period size: 15 Copynumber: 3.7 Consensus size: 15
26122598 TTATTTTTCT
26122608 TTATTT-TTATTTTA
1 TTATTTATTATTTTA
26122622 TTATTTTATTATTTTA
1 TTA-TTTATTATTTTA
*
26122638 TTATTTATTATTTTG
1 TTATTTATTATTTTA
26122653 TTATTTATTA
1 TTATTTATTA
26122663 CTATATTTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
14 3 0.08
15 24 0.63
16 11 0.29
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.75
Consensus pattern (15 bp):
TTATTTATTATTTTA
Found at i:26122669 original size:23 final size:23
Alignment explanation
Indices: 26122612--26122674 Score: 69
Period size: 23 Copynumber: 2.8 Consensus size: 23
26122602 TTTTCTTTAT
26122612 TTTTATT-T-TATTATTTTATTA
1 TTTTATTATATATTATTTTATTA
* *
26122633 TTTTATTATTTATTATTTTGTTA
1 TTTTATTATATATTATTTTATTA
*
26122656 -TTTATTACTATATTTTTTT
1 TTTTATTA-TATATTATTTT
26122675 TGGATATTAA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
21 7 0.19
22 8 0.22
23 21 0.58
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.75
Consensus pattern (23 bp):
TTTTATTATATATTATTTTATTA
Found at i:26124078 original size:112 final size:108
Alignment explanation
Indices: 26123768--26124084 Score: 365
Period size: 107 Copynumber: 2.9 Consensus size: 108
26123758 ACAAAAATTT
* * ** * *
26123768 TTAAGAATGTGTTGGGCTGAGTAACCGGGGTAAGGTGCTTGAGTTGTCATC-CTATTTCGCATCA
1 TTAAGAGTATGTTGGGCTGAGTAACCGGGGTGGGGTGCTTGAGTTGTCATCTCT-CTTCGCGTCA
* * *
26123832 AAAGGTTTAATATATTCTTAAG-GAAAGAAAAACTCATAATAAA
65 AAAGGTTCAATATATTCTTAAGAAAAAGAAAAAATCATAATAAA
** * * *
26123875 TTAAGAGTATGTTAAGCTAAGTAACCGGGGTGGGGTGCTTGAGTTGTTATCTCTCTTTGCGTCAA
1 TTAAGAGTATGTTGGGCTGAGTAACCGGGGTGGGGTGCTTGAGTTGTCATCTCTCTTCGCGTCAA
*
26123940 AAGGTTCAATATATTCTTACGAAAAAAGACATATATAAAT-ATAATAAA
66 AAGGTTCAATATATTCTTAAG-AAAAAG--A-A-A-AAATCATAATAAA
* * *
26123988 TTAGGAGTATGTTGGGCTGAGTAACCTGGGTGGGGTGCTT-AGCTGTCATCTCTCTTCGCGTCAA
1 TTAAGAGTATGTTGGGCTGAGTAACCGGGGTGGGGTGCTTGAGTTGTCATCTCTCTTCGCGTCAA
26124052 AAGGTTCAATATATTCTTAAGCAAAAA-AAAAAA
66 AAGGTTCAATATATTCTTAAG-AAAAAGAAAAAA
26124085 GATGTATTAA
Statistics
Matches: 177, Mismatches: 25, Indels: 17
0.81 0.11 0.08
Matches are distributed among these distances:
106 3 0.02
107 71 0.40
108 3 0.02
109 5 0.03
111 1 0.01
112 47 0.27
113 44 0.25
114 3 0.02
ACGTcount: A:0.33, C:0.13, G:0.22, T:0.31
Consensus pattern (108 bp):
TTAAGAGTATGTTGGGCTGAGTAACCGGGGTGGGGTGCTTGAGTTGTCATCTCTCTTCGCGTCAA
AAGGTTCAATATATTCTTAAGAAAAAGAAAAAATCATAATAAA
Found at i:26124246 original size:224 final size:225
Alignment explanation
Indices: 26123984--26124440 Score: 835
Period size: 225 Copynumber: 2.0 Consensus size: 225
26123974 ATAAATATAA
* *
26123984 TAAATTAGGAGTATGTTGGGCTGAGTAACCTGGGTGGGGTGCTTAGCTGTCATCTCTCTTCGCGT
1 TAAATTGGGAGTATGTTGGGCTGAGTAACCGGGGTGGGGTGCTTAGCTGTCATCTCTCTTCGCGT
26124049 CAAAAGGTTCAATATATTCTTAAGC-AAAAAAAAAAAGATGTATTAATAATAAAATTGCATTTGG
66 CAAAAGGTTCAATATATTCTTAAGCAAAAAAAAAAAAGATGTATTAATAATAAAATTGCATTTGG
*
26124113 GGACTAAGAGTGGAAACAAATAGGGTGCCTCGGTAAGTTTAGTACATTAACTAATTTTCATGAAA
131 GGACTAAGAGTAGAAACAAATAGGGTGCCTCGGTAAGTTTAGTACATTAACTAATTTTCATGAAA
*
26124178 TAATCTAAGACGATTTAATTTTTGTGTGTT
196 TAATCTAAGACGATTTAATTTTTCTGTGTT
*
26124208 TAAATTGGGAGTATGTTGGGCTGAGTAACCGGGGTGGGGTGCTTGGCTGTCATCTCTCTTCGCGT
1 TAAATTGGGAGTATGTTGGGCTGAGTAACCGGGGTGGGGTGCTTAGCTGTCATCTCTCTTCGCGT
*
26124273 CAAAAGGTTCAATATATTCTTAAGCAAAAAAAAAAAAGATGTCTTAATAATAAAATTGCATTTGG
66 CAAAAGGTTCAATATATTCTTAAGCAAAAAAAAAAAAGATGTATTAATAATAAAATTGCATTTGG
* *
26124338 GGACTAAGAGTAGAAACAAATAGGGTGTCTTGGTAAGTTTAGTACATTAACTAATTTTCATGAAA
131 GGACTAAGAGTAGAAACAAATAGGGTGCCTCGGTAAGTTTAGTACATTAACTAATTTTCATGAAA
26124403 TAATCTAAGACGATTTAATTTTTCTGTGTT
196 TAATCTAAGACGATTTAATTTTTCTGTGTT
26124433 TAAATTGG
1 TAAATTGG
26124441 AATACTTTTT
Statistics
Matches: 224, Mismatches: 8, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
224 87 0.39
225 137 0.61
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.33
Consensus pattern (225 bp):
TAAATTGGGAGTATGTTGGGCTGAGTAACCGGGGTGGGGTGCTTAGCTGTCATCTCTCTTCGCGT
CAAAAGGTTCAATATATTCTTAAGCAAAAAAAAAAAAGATGTATTAATAATAAAATTGCATTTGG
GGACTAAGAGTAGAAACAAATAGGGTGCCTCGGTAAGTTTAGTACATTAACTAATTTTCATGAAA
TAATCTAAGACGATTTAATTTTTCTGTGTT
Found at i:26126801 original size:11 final size:12
Alignment explanation
Indices: 26126768--26126802 Score: 54
Period size: 11 Copynumber: 2.9 Consensus size: 12
26126758 AGAAAAAAAA
26126768 GAAGAGAGAGAGG
1 GAAGAGAGA-AGG
26126781 GAAGAGAGAAGG
1 GAAGAGAGAAGG
26126793 G-AGAGAGAAG
1 GAAGAGAGAAG
26126803 AGAGGGGAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 9 0.41
12 4 0.18
13 9 0.41
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (12 bp):
GAAGAGAGAAGG
Found at i:26127617 original size:13 final size:13
Alignment explanation
Indices: 26127601--26127626 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26127591 TTTATTTGGT
26127601 TTATTGGGTTTTG
1 TTATTGGGTTTTG
26127614 TTATTGGGTTTTG
1 TTATTGGGTTTTG
26127627 GGGGTGGCCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.00, G:0.31, T:0.62
Consensus pattern (13 bp):
TTATTGGGTTTTG
Found at i:26133119 original size:72 final size:72
Alignment explanation
Indices: 26132989--26133165 Score: 275
Period size: 72 Copynumber: 2.4 Consensus size: 72
26132979 ATTAAAAGGT
* * *
26132989 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTGT
1 TCAACTCATCTCTCGCAATATGAGTTGATT-TTGACAAACAGAAATTGAAATTACCTCAACGTGT
26133054 CCTGAGGC
65 CCTGAGGC
*
26133062 TCAACTCATTTCTCGCAATATGAGTTGAATTTTGA-AAACAGAAATTGAAATTACCTCAACGTGT
1 TCAACTCATCTCTCGCAATATGAGTTG-ATTTTGACAAACAGAAATTGAAATTACCTCAACGTGT
*
26133126 CTTGAGGC
65 CCTGAGGC
*
26133134 TCAACTCATCTCTCGTAATATGAGTTGATTTT
1 TCAACTCATCTCTCGCAATATGAGTTGATTTT
26133166 CCTTGGAAAG
Statistics
Matches: 96, Mismatches: 7, Indels: 4
0.90 0.07 0.04
Matches are distributed among these distances:
71 5 0.05
72 60 0.62
73 28 0.29
74 3 0.03
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (72 bp):
TCAACTCATCTCTCGCAATATGAGTTGATTTTGACAAACAGAAATTGAAATTACCTCAACGTGTC
CTGAGGC
Found at i:26133998 original size:45 final size:41
Alignment explanation
Indices: 26133949--26134048 Score: 112
Period size: 42 Copynumber: 2.3 Consensus size: 41
26133939 GGACGCCCTC
26133949 TCGGGTTTTCATCCTGAT-CTTTTTGTACTAATCAAGATGCCCTTT
1 TCGGGTTTTCATCCTGATCCTTTTT-T--T--TCAAGATGCCCTTT
** *
26133994 TCGGGTTTTCGCCCTGATCCCTTTTTTTTTAAGATGCCCTTT
1 TCGGGTTTTCATCCTGAT-CCTTTTTTTTCAAGATGCCCTTT
26134036 TCGGGTTTTCATC
1 TCGGGTTTTCATC
26134049 TTAAGCATAA
Statistics
Matches: 48, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
42 24 0.50
44 1 0.02
45 16 0.33
46 1 0.02
47 6 0.12
ACGTcount: A:0.13, C:0.24, G:0.17, T:0.46
Consensus pattern (41 bp):
TCGGGTTTTCATCCTGATCCTTTTTTTTCAAGATGCCCTTT
Found at i:26146126 original size:11 final size:12
Alignment explanation
Indices: 26146110--26146145 Score: 58
Period size: 11 Copynumber: 3.2 Consensus size: 12
26146100 GAAAAAAAAA
26146110 GAAGAGAG-AGG
1 GAAGAGAGAAGG
26146121 GAAGAGAGAAGG
1 GAAGAGAGAAGG
26146133 G-AGAGAGAAGG
1 GAAGAGAGAAGG
26146144 GA
1 GA
26146146 GGGGGGAAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 19 0.83
12 4 0.17
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (12 bp):
GAAGAGAGAAGG
Found at i:26146350 original size:10 final size:10
Alignment explanation
Indices: 26146332--26146379 Score: 53
Period size: 10 Copynumber: 4.8 Consensus size: 10
26146322 AGAAAATAAN
*
26146332 TTATATTTTT
1 TTATTTTTTT
26146342 TTA-TTTTTT
1 TTATTTTTTT
*
26146351 TTATTTTTTC
1 TTATTTTTTT
*
26146361 TTATTTTCTT
1 TTATTTTTTT
26146371 TTATGTTTT
1 TTAT-TTTT
26146380 AATATGTGTA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
9 8 0.26
10 20 0.65
11 3 0.10
ACGTcount: A:0.12, C:0.04, G:0.02, T:0.81
Consensus pattern (10 bp):
TTATTTTTTT
Found at i:26147057 original size:13 final size:13
Alignment explanation
Indices: 26147041--26147066 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26147031 TTTATTTGGT
26147041 TTATTGGGTTTTG
1 TTATTGGGTTTTG
26147054 TTATTGGGTTTTG
1 TTATTGGGTTTTG
26147067 GGGGTGGCCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.00, G:0.31, T:0.62
Consensus pattern (13 bp):
TTATTGGGTTTTG
Found at i:26148087 original size:13 final size:15
Alignment explanation
Indices: 26148056--26148084 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
26148046 ACTTTTCCTT
26148056 TTAGCAAATATTATA
1 TTAGCAAATATTATA
26148071 TTAGCAAATATTAT
1 TTAGCAAATATTAT
26148085 TAGTATGAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.41
Consensus pattern (15 bp):
TTAGCAAATATTATA
Found at i:26148546 original size:168 final size:168
Alignment explanation
Indices: 26148353--26148688 Score: 672
Period size: 168 Copynumber: 2.0 Consensus size: 168
26148343 ATACTTGTAA
26148353 TATAAAGTTTTGGAAATAATTTTTTTTATCATTGATCTAATTTTTTCTATAAAAAAATTTTATCG
1 TATAAAGTTTTGGAAATAATTTTTTTTATCATTGATCTAATTTTTTCTATAAAAAAATTTTATCG
26148418 GTGCTGCCTGACATACCAATGACACTCATTAAAAAATTATTTTTTCTCTTTTATTTTCACTATGA
66 GTGCTGCCTGACATACCAATGACACTCATTAAAAAATTATTTTTTCTCTTTTATTTTCACTATGA
26148483 ATACCTTATTTTTTTAGAGGTTTTCGAAAAATACATAC
131 ATACCTTATTTTTTTAGAGGTTTTCGAAAAATACATAC
26148521 TATAAAGTTTTGGAAATAATTTTTTTTATCATTGATCTAATTTTTTCTATAAAAAAATTTTATCG
1 TATAAAGTTTTGGAAATAATTTTTTTTATCATTGATCTAATTTTTTCTATAAAAAAATTTTATCG
26148586 GTGCTGCCTGACATACCAATGACACTCATTAAAAAATTATTTTTTCTCTTTTATTTTCACTATGA
66 GTGCTGCCTGACATACCAATGACACTCATTAAAAAATTATTTTTTCTCTTTTATTTTCACTATGA
26148651 ATACCTTATTTTTTTAGAGGTTTTCGAAAAATACATAC
131 ATACCTTATTTTTTTAGAGGTTTTCGAAAAATACATAC
26148689 GGTGCTGCTT
Statistics
Matches: 168, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
168 168 1.00
ACGTcount: A:0.33, C:0.13, G:0.09, T:0.45
Consensus pattern (168 bp):
TATAAAGTTTTGGAAATAATTTTTTTTATCATTGATCTAATTTTTTCTATAAAAAAATTTTATCG
GTGCTGCCTGACATACCAATGACACTCATTAAAAAATTATTTTTTCTCTTTTATTTTCACTATGA
ATACCTTATTTTTTTAGAGGTTTTCGAAAAATACATAC
Found at i:26151958 original size:17 final size:17
Alignment explanation
Indices: 26151936--26151968 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
26151926 TAATTATACT
26151936 TGTTAATGCAATTACAG
1 TGTTAATGCAATTACAG
*
26151953 TGTTAATGCTATTACA
1 TGTTAATGCAATTACA
26151969 TATATTGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.39
Consensus pattern (17 bp):
TGTTAATGCAATTACAG
Found at i:26152420 original size:6 final size:6
Alignment explanation
Indices: 26152409--26152444 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
26152399 ATTATAATAA
*
26152409 TTAATT TTAATT TTAATT TTAATT TTAATG TTAATT
1 TTAATT TTAATT TTAATT TTAATT TTAATT TTAATT
26152445 ATTTGAATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (6 bp):
TTAATT
Found at i:26155982 original size:58 final size:58
Alignment explanation
Indices: 26155887--26156003 Score: 216
Period size: 58 Copynumber: 2.0 Consensus size: 58
26155877 AAGAAGATGG
*
26155887 TCCCTTAACCCTTTTTGTTTTCCTTATTTTATTACTTTAACATTTTTATTAATAAATT
1 TCCCCTAACCCTTTTTGTTTTCCTTATTTTATTACTTTAACATTTTTATTAATAAATT
*
26155945 TCCCCTAACCCTTTTTGTTTTTCTTATTTTATTACTTTAACATTTTTATTAATAAATT
1 TCCCCTAACCCTTTTTGTTTTCCTTATTTTATTACTTTAACATTTTTATTAATAAATT
26156003 T
1 T
26156004 ACTACAAAAT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.24, C:0.17, G:0.02, T:0.57
Consensus pattern (58 bp):
TCCCCTAACCCTTTTTGTTTTCCTTATTTTATTACTTTAACATTTTTATTAATAAATT
Found at i:26158646 original size:22 final size:20
Alignment explanation
Indices: 26158610--26158668 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 20
26158600 GGCCCGTCCC
26158610 ATTT-TTTTAATAAATACCAAAA
1 ATTTATTTTAA-AAATA--AAAA
26158632 ATTTATTTTAAAAATTAAAAA
1 ATTTATTTTAAAAA-TAAAAA
**
26158653 AAGTATTTTAAAAATA
1 ATTTATTTTAAAAATA
26158669 TTTTAAAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
20 2 0.06
21 16 0.48
22 7 0.21
23 8 0.24
ACGTcount: A:0.54, C:0.03, G:0.02, T:0.41
Consensus pattern (20 bp):
ATTTATTTTAAAAATAAAAA
Found at i:26158670 original size:11 final size:12
Alignment explanation
Indices: 26158650--26158716 Score: 64
Period size: 12 Copynumber: 5.3 Consensus size: 12
26158640 TAAAAATTAA
26158650 AAAAAGTATTTT
1 AAAAAGTATTTT
26158662 AAAAA-TATTTT
1 AAAAAGTATTTT
** *
26158673 AAAATTAAAAAAATTT
1 --AA--AAAGTATTTT
26158689 AAAAAGTATTTT
1 AAAAAGTATTTT
26158701 AAAAAGTATTTT
1 AAAAAGTATTTT
26158713 AAAA
1 AAAA
26158717 TTTAAAAAAT
Statistics
Matches: 45, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
11 6 0.13
12 28 0.62
13 2 0.04
14 2 0.04
15 3 0.07
16 4 0.09
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.37
Consensus pattern (12 bp):
AAAAAGTATTTT
Found at i:26158682 original size:17 final size:18
Alignment explanation
Indices: 26158659--26158746 Score: 65
Period size: 17 Copynumber: 4.8 Consensus size: 18
26158649 AAAAAAGTAT
*
26158659 TTTAAAAATATTTTAAAA
1 TTTAAAAATATTTAAAAA
*
26158677 -TTAAAAAAATTTAAAAAGTA
1 TTTAAAAATATTT-AAAA--A
*
26158697 TTTTAAAAAGTATTTTAAAA
1 -TTTAAAAA-TATTTAAAAA
26158717 TTTAAAAA-ATTTAAAAA
1 TTTAAAAATATTTAAAAA
* *
26158734 -ATAAATATATTTA
1 TTTAAAAATATTTA
26158747 TTATATCGGG
Statistics
Matches: 56, Mismatches: 7, Indels: 15
0.72 0.09 0.19
Matches are distributed among these distances:
16 5 0.09
17 24 0.43
18 3 0.05
19 8 0.14
20 2 0.04
22 10 0.18
23 4 0.07
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (18 bp):
TTTAAAAATATTTAAAAA
Found at i:26158693 original size:40 final size:41
Alignment explanation
Indices: 26158641--26158734 Score: 156
Period size: 40 Copynumber: 2.3 Consensus size: 41
26158631 AATTTATTTT
*
26158641 AAAAATTAAAAAAAGTATTTTAAAAA-TATTTTAAAATTAA
1 AAAAATTTAAAAAAGTATTTTAAAAAGTATTTTAAAATTAA
*
26158681 AAAAATTT-AAAAAGTATTTTAAAAAGTATTTTAAAATTTA
1 AAAAATTTAAAAAAGTATTTTAAAAAGTATTTTAAAATTAA
26158721 AAAAATTTAAAAAA
1 AAAAATTTAAAAAA
26158735 TAAATATATT
Statistics
Matches: 50, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
39 17 0.34
40 28 0.56
41 5 0.10
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (41 bp):
AAAAATTTAAAAAAGTATTTTAAAAAGTATTTTAAAATTAA
Found at i:26158735 original size:9 final size:9
Alignment explanation
Indices: 26158659--26158735 Score: 59
Period size: 9 Copynumber: 8.1 Consensus size: 9
26158649 AAAAAAGTAT
26158659 TTTAAAAATA
1 TTTAAAAA-A
*
26158669 TTT-TAAAA
1 TTTAAAAAA
*
26158677 TTAAAAAAA
1 TTTAAAAAA
26158686 TTTAAAAAGTA
1 TTTAAAAA--A
26158697 TTTTAAAAAGTA
1 -TTTAAAAA--A
*
26158709 TTT-TAAAA
1 TTTAAAAAA
26158717 TTTAAAAAA
1 TTTAAAAAA
26158726 TTTAAAAAA
1 TTTAAAAAA
26158735 T
1 T
26158736 AAATATATTT
Statistics
Matches: 56, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
8 7 0.12
9 28 0.50
10 6 0.11
11 4 0.07
12 11 0.20
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (9 bp):
TTTAAAAAA
Found at i:26171294 original size:3 final size:3
Alignment explanation
Indices: 26171286--26171333 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
26171276 CAAATGCTCA
26171286 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
26171334 GAAGGAAGAG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:26171670 original size:41 final size:40
Alignment explanation
Indices: 26171561--26171843 Score: 194
Period size: 41 Copynumber: 6.8 Consensus size: 40
26171551 ATATTTTTGG
* * * *
26171561 GCCTTTAGCGGCGTTTTTTACAAATCGCCGCTAATTCTC-C
1 GCCTTTAGCGGCGTTTTTTA-TAAGCGCCGCTAATGCTCTA
* **
26171601 GACCTTTTAGCGGCGATTTTCGTGAAGCGCCGCTAATGCTCTA
1 G-CC-TTTAGCGGCGTTTTTTAT-AAGCGCCGCTAATGCTCTA
26171644 GCCTTTAGCGGCGTTTTCTTATAAGCGCCGCTAATGCTCTA
1 GCCTTTAGCGGCGTTTT-TTATAAGCGCCGCTAATGCTCTA
* * *
26171685 GCCTTTAGCGGCGTTTTTTAATAAGCGCCACTAATGATCTG
1 GCCTTTAGCGGCGTTTTTT-ATAAGCGCCGCTAATGCTCTA
* * ** * * * *
26171726 GTCATTAGCGGCGTCTTTGAAAAAGCGCCGGTAATACTGT-
1 GCCTTTAGCGGCGT-TTTTTATAAGCGCCGCTAATGCTCTA
* * * * * *
26171766 GTCATTTAGCGGCGCTTGTTTAAAAACGCCGCTATTGTTCGT-
1 G-CCTTTAGCGGCG-TTTTTTATAAGCGCCGCTAATGCTC-TA
* * *
26171808 TCTTTTAGCGGCGTTTTTTGTGAAAGCGCCGCTAAT
1 GCCTTTAGCGGCGTTTTTTAT--AAGCGCCGCTAAT
26171844 AATAAAATCT
Statistics
Matches: 189, Mismatches: 42, Indels: 22
0.75 0.17 0.09
Matches are distributed among these distances:
40 9 0.05
41 130 0.69
42 49 0.26
43 1 0.01
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.34
Consensus pattern (40 bp):
GCCTTTAGCGGCGTTTTTTATAAGCGCCGCTAATGCTCTA
Found at i:26175168 original size:264 final size:264
Alignment explanation
Indices: 26174698--26175201 Score: 963
Period size: 264 Copynumber: 1.9 Consensus size: 264
26174688 AAGTAATTTT
*
26174698 TGTAAAGAAGGCATTGTGAAAAAGATGGAGAGACAATAAAAGTACTTTGAAGAAAAATTATTATA
1 TGTAAAGAAGGCATTGGGAAAAAGATGGAGAGACAATAAAAGTACTTTGAAGAAAAATTATTATA
26174763 AGACAAAAACAACCCTCGATGAGAAATTGAAAAATGTCCCGCCGGGTATGTTGAGGTACCAATGA
66 AGACAAAAACAACCCTCGATGAGAAATTGAAAAATGTCCCGCCGGGTATGTTGAGGTACCAATGA
26174828 GAAGATGCGGTTAGATTTTGGCATTCTCAGAAAGGCAAGGTATGACGTACTTCCAAACTATTGTA
131 GAAGATGCGGTTAGATTTTGGCATTCTCAGAAAGGCAAGGTATGACGTACTTCCAAACTATTGTA
26174893 ATTATTTTGGTTTATAGTATTTACTATTTACGTACTAAAAATTTTTGCTTTAGAGGTCTCGGATG
196 ATTATTTTGGTTTATAGTATTTACTATTTACGTACTAAAAATTTTTGCTTTAGAGGTCTCGGATG
26174958 CTTA
261 CTTA
26174962 TGTAAAGAAGGCATTGGGAAAAAGATGGAGAGACAATAAAAGTACTTTGAAGAAAAATTATTATA
1 TGTAAAGAAGGCATTGGGAAAAAGATGGAGAGACAATAAAAGTACTTTGAAGAAAAATTATTATA
* *
26175027 AGACAAAAACAACCCTCGATGAGAAATTGCAAAATGTCCCGCCGGGTATGTTGAGGTACCAATGG
66 AGACAAAAACAACCCTCGATGAGAAATTGAAAAATGTCCCGCCGGGTATGTTGAGGTACCAATGA
*
26175092 GAAGATGCGGTTAGATTTTGGCATTCTCAGAAAGGCGAGGTATGACGTACTTCCAAACTATTGTA
131 GAAGATGCGGTTAGATTTTGGCATTCTCAGAAAGGCAAGGTATGACGTACTTCCAAACTATTGTA
*
26175157 ATTATTTTGGTTTATAGTATTTACTATTTATGTACTAAAAATTTT
196 ATTATTTTGGTTTATAGTATTTACTATTTACGTACTAAAAATTTT
26175202 ATAACGTAGG
Statistics
Matches: 235, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
264 235 1.00
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.30
Consensus pattern (264 bp):
TGTAAAGAAGGCATTGGGAAAAAGATGGAGAGACAATAAAAGTACTTTGAAGAAAAATTATTATA
AGACAAAAACAACCCTCGATGAGAAATTGAAAAATGTCCCGCCGGGTATGTTGAGGTACCAATGA
GAAGATGCGGTTAGATTTTGGCATTCTCAGAAAGGCAAGGTATGACGTACTTCCAAACTATTGTA
ATTATTTTGGTTTATAGTATTTACTATTTACGTACTAAAAATTTTTGCTTTAGAGGTCTCGGATG
CTTA
Found at i:26176520 original size:43 final size:42
Alignment explanation
Indices: 26176418--26176645 Score: 257
Period size: 43 Copynumber: 5.4 Consensus size: 42
26176408 GTTTGTAAAA
* * *
26176418 TAAGCGCCACTAAAGAACACT-A-CTGTTAGCAGCGTTTTTGACC
1 TAAGCGCCGCTAAAGAACA-TGATCT-TTAGCGGCGTTTTT-TCC
* *
26176461 -AAGCGCCGCTATAGAACATTA-CTTTTAGCGGCGTTTTCTTCC
1 TAAGCGCCGCTAAAGAACATGATC-TTTAGCGGCGTTTT-TTCC
26176503 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCC
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCG-TTTTTTCC
* * * *
26176546 CAAGCGCCACTAGAGAACATGATCTTTAGCGGCATTTTTTCC
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCC
**
26176588 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTTG
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCG-TTTTTTCC
*
26176631 TAAGCGCCGCAAAAG
1 TAAGCGCCGCTAAAG
26176646 TTAGCGACGT
Statistics
Matches: 161, Mismatches: 17, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
41 1 0.01
42 70 0.43
43 85 0.53
44 5 0.03
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (42 bp):
TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCC
Found at i:26176638 original size:85 final size:86
Alignment explanation
Indices: 26176418--26176628 Score: 288
Period size: 85 Copynumber: 2.5 Consensus size: 86
26176408 GTTTGTAAAA
* * ** * *
26176418 TAAGCGCCACTAAAGAACACT-A-CTGTTAGCAGCG-TTTTTGACCAAGCGCCGCTATAGAACAT
1 TAAGCGCCGCTAAAGAACA-TGATCT-TTAGCGGCGTTTTTTTCCCAAGCGCCACTAGAGAACAT
* *
26176480 TACTTTTAGCGGCGTTTTCTTCC
64 GACTTTTAGCGGCATTTTCTTCC
26176503 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCCCAAGCGCCACTAGAGAACATGA
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCCCAAGCGCCACTAGAGAACATGA
26176568 -TCTTTAGCGGCATTTT-TTCC
66 CT-TTTAGCGGCATTTTCTTCC
26176588 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTT
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTT
26176629 TGTAAGCGCC
Statistics
Matches: 114, Mismatches: 8, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
84 1 0.01
85 73 0.64
86 40 0.35
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (86 bp):
TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCCCAAGCGCCACTAGAGAACATGA
CTTTTAGCGGCATTTTCTTCC
Found at i:26181029 original size:23 final size:22
Alignment explanation
Indices: 26180987--26181053 Score: 86
Period size: 23 Copynumber: 3.0 Consensus size: 22
26180977 AAAAAATTTG
26180987 AAATGTTTTATAATATTATTTTTA
1 AAAT-TTTTA-AATATTATTTTTA
26181011 AAATTTTTAAATATATATTTTTA
1 AAATTTTTAAATAT-TATTTTTA
26181034 AAA--TTTAAATATT-TTTTTA
1 AAATTTTTAAATATTATTTTTA
26181053 A
1 A
26181054 TAATATAAAA
Statistics
Matches: 42, Mismatches: 0, Indels: 7
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.17
20 1 0.02
21 9 0.21
22 5 0.12
23 16 0.38
24 4 0.10
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (22 bp):
AAATTTTTAAATATTATTTTTA
Found at i:26181042 original size:21 final size:20
Alignment explanation
Indices: 26180993--26181067 Score: 80
Period size: 21 Copynumber: 3.5 Consensus size: 20
26180983 TTTGAAATGT
26180993 TTTATAATATTATTTTTAAAA
1 TTTA-AATATTATTTTTAAAA
26181014 TTTTTAAATATATATTTTTAAAA
1 --TTTAAATAT-TATTTTTAAAA
26181037 TTTAAATATT-TTTTTAATAA
1 TTTAAATATTATTTTTAA-AA
*
26181057 TATAAAATATT
1 T-TTAAATATT
26181068 TAAATATTTT
Statistics
Matches: 48, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
19 7 0.15
20 4 0.08
21 17 0.35
22 5 0.10
23 15 0.31
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
TTTAAATATTATTTTTAAAA
Found at i:26181068 original size:21 final size:19
Alignment explanation
Indices: 26180998--26181068 Score: 61
Period size: 19 Copynumber: 3.4 Consensus size: 19
26180988 AATGTTTTAT
26180998 AATATTATTTTTAAAATTTTTAA
1 AATATT-TTTTTAAAA---TTAA
* *
26181021 ATATATATTTTTAAAATTTA
1 A-ATATTTTTTTAAAATTAA
26181041 AATATTTTTTTAATAATATAA
1 AATATTTTTTTAA-AAT-TAA
26181062 AATATTT
1 AATATTT
26181069 AAATATTTTA
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
19 11 0.27
20 7 0.17
21 9 0.22
23 10 0.24
24 4 0.10
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
AATATTTTTTTAAAATTAA
Found at i:26181152 original size:18 final size:19
Alignment explanation
Indices: 26181129--26181165 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
26181119 TTTAAATGTA
26181129 AATTTTAAATAT-CTTTTT
1 AATTTTAAATATACTTTTT
*
26181147 AATTTTACATATACTTTTT
1 AATTTTAAATATACTTTTT
26181166 TAAATTATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.59
Consensus pattern (19 bp):
AATTTTAAATATACTTTTT
Found at i:26182643 original size:90 final size:90
Alignment explanation
Indices: 26182316--26182623 Score: 447
Period size: 90 Copynumber: 3.4 Consensus size: 90
26182306 ATAAAATATA
* * ** *
26182316 AAATTCAAACAAGA-ATAATACACACTAAATTAAATTTAAACACCCAACAAACTACAAACAGATG
1 AAATTCAAACTACATATAATACGGACTAAATTAAATTTAAACACCCAACAAATTACAAACAGATG
26182380 GGTAAAATTAATAAACGAAAATTTT
66 GGTAAAATTAATAAACGAAAATTTT
*
26182405 AAATTCAAACTACATATAATACGGGCTAAATTAAATTTAAACACCCAACAAATTACAAACAGATG
1 AAATTCAAACTACATATAATACGGACTAAATTAAATTTAAACACCCAACAAATTACAAACAGATG
* * ** *
26182470 GATAAAATTAGTGTACGAAATTTTT
66 GGTAAAATTAATAAACGAAAATTTT
* * **
26182495 AAATTCAAACTATATATAACACAAACTAAATTAAATTTAAACACCCAACAAATTACAAACAGATG
1 AAATTCAAACTACATATAATACGGACTAAATTAAATTTAAACACCCAACAAATTACAAACAGATG
*
26182560 GGTAAAATTAATACACGAAAATTTT
66 GGTAAAATTAATAAACGAAAATTTT
* *
26182585 AAATTCAATCTACATATAATACGGACTAGATTAAATTTA
1 AAATTCAAACTACATATAATACGGACTAAATTAAATTTA
26182624 TAAATACAAA
Statistics
Matches: 191, Mismatches: 27, Indels: 1
0.87 0.12 0.00
Matches are distributed among these distances:
89 12 0.06
90 179 0.94
ACGTcount: A:0.51, C:0.15, G:0.07, T:0.26
Consensus pattern (90 bp):
AAATTCAAACTACATATAATACGGACTAAATTAAATTTAAACACCCAACAAATTACAAACAGATG
GGTAAAATTAATAAACGAAAATTTT
Found at i:26185252 original size:18 final size:18
Alignment explanation
Indices: 26185221--26185270 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
26185211 ATAAGAAAAC
*
26185221 ATTTTGAAATTGAATAATG
1 ATTTGGAAA-TGAATAATG
*
26185240 ATTTGTAAATGAATAATG
1 ATTTGGAAATGAATAATG
*
26185258 TTTTGGAAATGAA
1 ATTTGGAAATGAA
26185271 CGACACGATT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
18 20 0.74
19 7 0.26
ACGTcount: A:0.42, C:0.00, G:0.18, T:0.40
Consensus pattern (18 bp):
ATTTGGAAATGAATAATG
Found at i:26186134 original size:112 final size:111
Alignment explanation
Indices: 26185998--26186216 Score: 298
Period size: 112 Copynumber: 2.0 Consensus size: 111
26185988 CCGAAAAAGG
* * *
26185998 TGGTGTCAGCCATCAGTGTTCCAAAATTAAAAAAAAAT-TG-CATTGGGAGTCAAAAAATGTACT
1 TGGTGTCAGCCATCAGTGTCCCAAAA-TAAAAAAAAATGTGTC-TTGGGAGCCAAAAAATGTACC
** * *
26186061 TGGTGTTGGCCATCTACTTGCCAGCACCCAAATTTTTTTTAAATGACAC
64 TGGTGCCGGCCATCTACTGGCCAGCAACCAAA-TTTTTTTAAATGACAC
* *
26186110 TGGTGTCAGCCATCAGTGTCCCAAAATAAAAAAAAATGTGTCTTGGGAGCCGAAATATGTACCTG
1 TGGTGTCAGCCATCAGTGTCCCAAAATAAAAAAAAATGTGTCTTGGGAGCCAAAAAATGTACCTG
* *
26186175 GTGCCGGCCATCTACTGGCGAGCAACTAAATTTTTTTAAATG
66 GTGCCGGCCATCTACTGGCCAGCAACCAAATTTTTTTAAATG
26186217 TCTCTAGTGC
Statistics
Matches: 94, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
111 23 0.24
112 70 0.74
113 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (111 bp):
TGGTGTCAGCCATCAGTGTCCCAAAATAAAAAAAAATGTGTCTTGGGAGCCAAAAAATGTACCTG
GTGCCGGCCATCTACTGGCCAGCAACCAAATTTTTTTAAATGACAC
Found at i:26189165 original size:30 final size:30
Alignment explanation
Indices: 26189123--26189219 Score: 108
Period size: 30 Copynumber: 3.2 Consensus size: 30
26189113 GTCACAAAGT
* *
26189123 AGTTCATTTCACCCGTATATGGGCGGTTCG
1 AGTTCATATCACCCGTACATGGGCGGTTCG
* * *
26189153 ACTTCATATCA-CCTTGACATGGGCAGTTCG
1 AGTTCATATCACCCGT-ACATGGGCGGTTCG
*
26189183 AGTTCATATCACCCAG-ACATAGGCGGTTCG
1 AGTTCATATCACCC-GTACATGGGCGGTTCG
26189213 AGTTCAT
1 AGTTCAT
26189220 TTCTCTTCAC
Statistics
Matches: 55, Mismatches: 9, Indels: 6
0.79 0.13 0.09
Matches are distributed among these distances:
29 3 0.05
30 50 0.91
31 2 0.04
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.30
Consensus pattern (30 bp):
AGTTCATATCACCCGTACATGGGCGGTTCG
Found at i:26192164 original size:40 final size:40
Alignment explanation
Indices: 26192120--26192200 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
26192110 GATCTTCCTT
*
26192120 TTCATTTATGCTAGCTTCACATTTTTTTGAAACGCAAACC
1 TTCATTTATGCTAGCTTCACATCTTTTTGAAACGCAAACC
26192160 TTCATTTATGCTAGCTTCACATCTTTTTGAAACGCAAACC
1 TTCATTTATGCTAGCTTCACATCTTTTTGAAACGCAAACC
26192200 T
1 T
26192201 ACTCTTTTCC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.27, C:0.23, G:0.10, T:0.40
Consensus pattern (40 bp):
TTCATTTATGCTAGCTTCACATCTTTTTGAAACGCAAACC
Found at i:26192496 original size:8 final size:8
Alignment explanation
Indices: 26192485--26192513 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
26192475 ATAAAACATT
26192485 AAATTTTA
1 AAATTTTA
26192493 AAATTTTA
1 AAATTTTA
26192501 AAATTTTA
1 AAATTTTA
26192509 AAATT
1 AAATT
26192514 AATTTAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (8 bp):
AAATTTTA
Found at i:26192515 original size:29 final size:29
Alignment explanation
Indices: 26192476--26192620 Score: 95
Period size: 29 Copynumber: 4.9 Consensus size: 29
26192466 CTCCACCAAA
26192476 TAAAACATTAAATTTTAAAATTTTAAAAT-T
1 TAAAA-ATTAAA-TTTAAAATTTTAAAATAT
* *
26192506 TTAAAATT-AATTTAAAAATGTTTAAATATCT
1 TAAAAATTAAATTT-AAAAT-TTTAAA-ATAT
* *
26192537 TAAAAATT-AA-TTAAAAATTAAAAAT-T
1 TAAAAATTAAATTTAAAATTTTAAAATAT
* *
26192563 ATAAAAATTATATTTAAAA-TTAAAAATAT
1 -TAAAAATTAAATTTAAAATTTTAAAATAT
* *
26192592 TTAAAATATACATTTAAAATATTATAAAA
1 TAAAAAT-TAAATTTAAAAT-TT-TAAAA
26192621 CAAATAATAA
Statistics
Matches: 95, Mismatches: 8, Indels: 22
0.76 0.06 0.18
Matches are distributed among these distances:
26 1 0.01
27 13 0.14
28 27 0.28
29 30 0.32
30 8 0.08
31 12 0.13
32 4 0.04
ACGTcount: A:0.57, C:0.02, G:0.01, T:0.40
Consensus pattern (29 bp):
TAAAAATTAAATTTAAAATTTTAAAATAT
Found at i:26192551 original size:30 final size:28
Alignment explanation
Indices: 26192476--26192620 Score: 109
Period size: 28 Copynumber: 4.9 Consensus size: 28
26192466 CTCCACCAAA
*
26192476 TAAAACATTAAATTTTAAAATTTTAAAATT
1 TAAAA-ATT-AATTTAAAAATTTTAAAATT
*
26192506 TTAAAATTAATTTAAAAATGTTTAAATATCT
1 TAAAAATTAATTTAAAAAT-TTTAAA-AT-T
*
26192537 TAAAAATTAA-TTAAAAA-TTAAAAATT
1 TAAAAATTAATTTAAAAATTTTAAAATT
*
26192563 ATAAAAATTATATTT-AAAA-TTAAAAATAT
1 -TAAAAATTA-ATTTAAAAATTTTAAAAT-T
* *
26192592 TTAAAATATACATTTAAAATATTATAAAA
1 TAAAAAT-TA-ATTTAAAA-ATTTTAAAA
26192621 CAAATAATAA
Statistics
Matches: 96, Mismatches: 8, Indels: 20
0.77 0.06 0.16
Matches are distributed among these distances:
26 1 0.01
27 11 0.11
28 34 0.35
29 18 0.19
30 16 0.17
31 11 0.11
32 5 0.05
ACGTcount: A:0.57, C:0.02, G:0.01, T:0.40
Consensus pattern (28 bp):
TAAAAATTAATTTAAAAATTTTAAAATT
Found at i:26192557 original size:18 final size:16
Alignment explanation
Indices: 26192536--26192572 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
26192526 TTTAAATATC
26192536 TTAAAAATTAATTAAAAA
1 TTAAAAATT-A-TAAAAA
26192554 TTAAAAATTATAAAAA
1 TTAAAAATTATAAAAA
26192570 TTA
1 TTA
26192573 TATTTAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 9 0.47
17 1 0.05
18 9 0.47
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
TTAAAAATTATAAAAA
Found at i:26192590 original size:57 final size:56
Alignment explanation
Indices: 26192490--26192597 Score: 130
Period size: 57 Copynumber: 1.9 Consensus size: 56
26192480 ACATTAAATT
* * * **
26192490 TTAAAATTTTAAAATTTTAAAATTAATTTAAAAATGTTTAAATATCTTAAAAATTAA
1 TTAAAAATTAAAAATTTAAAAATTAATTTAAAAATGTAAAAATAT-TTAAAAATTAA
26192547 TTAAAAATTAAAAATTATAAAAATTATATTT-AAAAT-TAAAAATATTTAAAA
1 TTAAAAATTAAAAATT-TAAAAATTA-ATTTAAAAATGTAAAAATATTTAAAA
26192598 TATACATTTA
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
56 6 0.14
57 21 0.48
58 13 0.30
59 4 0.09
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.41
Consensus pattern (56 bp):
TTAAAAATTAAAAATTTAAAAATTAATTTAAAAATGTAAAAATATTTAAAAATTAA
Found at i:26192599 original size:9 final size:9
Alignment explanation
Indices: 26192485--26192600 Score: 50
Period size: 8 Copynumber: 12.7 Consensus size: 9
26192475 ATAAAACATT
26192485 AAAT-TTTA
1 AAATATTTA
26192493 AAAT-TTTA
1 AAATATTTA
26192501 AAAT-TTTA
1 AAATATTTA
26192509 AAATTAATTTA
1 AAA-T-ATTTA
*
26192520 AAA-ATGTTT
1 AAATAT-TTA
26192529 AAATATCTTAA
1 AAATAT-TT-A
*
26192540 AAATTAATTA
1 AAA-TATTTA
26192550 AAA-A-TTA
1 AAATATTTA
26192557 AAA-ATTATAA
1 AAATATT-T-A
*
26192567 AAATTATATTT
1 AAA-TAT-TTA
*
26192578 AAA-ATTAA
1 AAATATTTA
26192586 AAATATTTA
1 AAATATTTA
26192595 AAATAT
1 AAATAT
26192601 ACATTTAAAA
Statistics
Matches: 86, Mismatches: 8, Indels: 27
0.71 0.07 0.22
Matches are distributed among these distances:
7 7 0.08
8 27 0.31
9 19 0.22
10 12 0.14
11 15 0.17
12 5 0.06
13 1 0.01
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.41
Consensus pattern (9 bp):
AAATATTTA
Found at i:26192611 original size:57 final size:57
Alignment explanation
Indices: 26192489--26192611 Score: 128
Period size: 57 Copynumber: 2.1 Consensus size: 57
26192479 AACATTAAAT
* * **
26192489 TTTAAAATTTTAAAATTTTAAAATTAATTTAAAAATGTTTAAATATCTTAAAAATTAA
1 TTTAAAA-TTAAAAATTTAAAAATTAATTTAAAAATGTAAAAATATCTTAAAAATTAA
*
26192547 TTAAAAATTAAAAATTATAAAAATTATATTT-AAAAT-TAAAAATAT-TT-AAAATATACA
1 TTTAAAATTAAAAATT-TAAAAATTA-ATTTAAAAATGTAAAAATATCTTAAAAAT-TA-A
26192604 TTTAAAAT
1 TTTAAAAT
26192612 ATTATAAAAC
Statistics
Matches: 55, Mismatches: 6, Indels: 9
0.79 0.09 0.13
Matches are distributed among these distances:
55 5 0.09
56 4 0.07
57 23 0.42
58 19 0.35
59 4 0.07
ACGTcount: A:0.56, C:0.02, G:0.01, T:0.41
Consensus pattern (57 bp):
TTTAAAATTAAAAATTTAAAAATTAATTTAAAAATGTAAAAATATCTTAAAAATTAA
Found at i:26192691 original size:12 final size:12
Alignment explanation
Indices: 26192674--26192722 Score: 61
Period size: 12 Copynumber: 4.4 Consensus size: 12
26192664 TTTAAAAAAT
26192674 TAAAACAAATTA
1 TAAAACAAATTA
26192686 TAAAACAAA-T-
1 TAAAACAAATTA
*
26192696 TAAAA-ATATTA
1 TAAAACAAATTA
26192707 TAAAACAAATTA
1 TAAAACAAATTA
26192719 -AAAA
1 TAAAA
26192723 TTAAAAATTG
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
9 2 0.06
10 6 0.19
11 10 0.31
12 14 0.44
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.24
Consensus pattern (12 bp):
TAAAACAAATTA
Found at i:26192708 original size:21 final size:21
Alignment explanation
Indices: 26192670--26192755 Score: 95
Period size: 21 Copynumber: 4.0 Consensus size: 21
26192660 ATATTTTAAA
*
26192670 AAATTAAAACAAATTATAAAAC
1 AAATTAAAA-ATATTATAAAAC
26192692 AAATTAAAAATATTATAAAAC
1 AAATTAAAAATATTATAAAAC
* *
26192713 AAATT-AAAA-ATTAAAAATTGAA
1 AAATTAAAAATATTATAAA---AC
26192735 AAATTAAAAATATTATAAAAC
1 AAATTAAAAATATTATAAAAC
26192756 TAATAATAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 11
0.77 0.07 0.16
Matches are distributed among these distances:
19 7 0.13
20 4 0.07
21 17 0.31
22 15 0.28
23 4 0.07
24 7 0.13
ACGTcount: A:0.67, C:0.05, G:0.01, T:0.27
Consensus pattern (21 bp):
AAATTAAAAATATTATAAAAC
Found at i:26192725 original size:7 final size:7
Alignment explanation
Indices: 26192713--26192745 Score: 57
Period size: 7 Copynumber: 4.6 Consensus size: 7
26192703 ATTATAAAAC
26192713 AAATTAA
1 AAATTAA
26192720 AAATTAA
1 AAATTAA
26192727 AAATTGAA
1 AAATT-AA
26192735 AAATTAA
1 AAATTAA
26192742 AAAT
1 AAAT
26192746 ATTATAAAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 18 0.72
8 7 0.28
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (7 bp):
AAATTAA
Found at i:26192738 original size:15 final size:14
Alignment explanation
Indices: 26192713--26192745 Score: 57
Period size: 15 Copynumber: 2.3 Consensus size: 14
26192703 ATTATAAAAC
26192713 AAATTAAAAATTAA
1 AAATTAAAAATTAA
26192727 AAATTGAAAAATTAA
1 AAATT-AAAAATTAA
26192742 AAAT
1 AAAT
26192746 ATTATAAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (14 bp):
AAATTAAAAATTAA
Found at i:26194168 original size:7 final size:7
Alignment explanation
Indices: 26194156--26194181 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
26194146 TATGAGATAC
26194156 GATACTT
1 GATACTT
26194163 GATACTT
1 GATACTT
26194170 GATACTT
1 GATACTT
26194177 GATAC
1 GATAC
26194182 CTGAGTCAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (7 bp):
GATACTT
Found at i:26197556 original size:21 final size:20
Alignment explanation
Indices: 26197527--26197566 Score: 55
Period size: 19 Copynumber: 1.9 Consensus size: 20
26197517 GTCTGAGGAC
26197527 TAAAGTGGAAACAAATTAAAAT
1 TAAAGTGG-AA-AAATTAAAAT
26197549 TAAA-TGGAAAAATTAAAA
1 TAAAGTGGAAAAATTAAAA
26197567 AGAAAAGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 9 0.50
20 2 0.11
21 3 0.17
22 4 0.22
ACGTcount: A:0.62, C:0.03, G:0.12, T:0.23
Consensus pattern (20 bp):
TAAAGTGGAAAAATTAAAAT
Found at i:26199045 original size:94 final size:94
Alignment explanation
Indices: 26198902--26200301 Score: 1299
Period size: 94 Copynumber: 14.9 Consensus size: 94
26198892 CAGTTTCATC
* * * * ** * **
26198902 TTACTCCATTGCAACTTCAAGGAGATAATG-TTTGTTATTATAG-TCTCAATCCGACCCACTGTA
1 TTACTCCACTGCAACTTCAGGGAGATAA-GATTCGCTATGGTAGAT-TCAATCTGACCCACTACA
* **
26198965 ACTTCAGGGGTATAGGATTTGTAGCTTCACC
64 ACTTTAGGGGTATAGGATTTGTAGCTTCAAA
* * ** * *
26198996 TTACTCCATTGCAACTTCAGGGAGATAATATTTTCTATGGCAGATTCAATCTGACCCACTAAAAC
1 TTACTCCACTGCAACTTCAGGGAGATAAGATTCGCTATGGTAGATTCAATCTGACCCACTACAAC
* * *
26199061 TTCAAGGATATAGGATTTGTAG-TTC-AA
66 TTTAGGGGTATAGGATTTGTAGCTTCAAA
* * * *
26199088 TCTACTCCACTGCAACTTCAGGAAGATAAGATTTGCTATGGTAGATTCAATCTGATCCACTGCAA
1 T-TACTCCACTGCAACTTCAGGGAGATAAGATTCGCTATGGTAGATTCAATCTGACCCACTACAA
26199153 CTTTTTAGGGGTATAGGATTTGTAGCTT-AAA
65 C--TTTAGGGGTATAGGATTTGTAGCTTCAAA
** * * * * * * *
26199184 TTTGTTCCATTGCAACTTCAAGGAGATAAGATT-TCTATGGCAGATTCAATTTGACGCATTGA-A
1 -TTACTCCACTGCAACTTCAGGGAGATAAGATTCGCTATGGTAGATTCAATCTGACCCACT-ACA
* * *
26199247 ACTTTAGAGGTATAGAATTTTTAGCTT-AAA
64 ACTTTAGGGGTATAGGATTTGTAGCTTCAAA
* * *
26199277 TATACTCTACTGCAACTTCAGAGAGATAAGATTCGCTATGGTAGATTCAATCTGATCCACTACAA
1 T-TACTCCACTGCAACTTCAGGGAGATAAGATTCGCTATGGTAGATTCAATCTGACCCACTACAA
26199342 CTTTTTAGGGGTATAGGATTTGTAGCTT-AAA
65 C--TTTAGGGGTATAGGATTTGTAGCTTCAAA
** * * * * * *
26199373 TTTGTTCCATTGCAACTTCAAGGAGATAAGATT-TCTATGGCAGATTCAATCTGACGCATTGA-A
1 -TTACTCCACTGCAACTTCAGGGAGATAAGATTCGCTATGGTAGATTCAATCTGACCCACT-ACA
* *
26199436 ACTTTAGGGGTATAGAATTTTTAGCTT-AAA
64 ACTTTAGGGGTATAGGATTTGTAGCTTCAAA
* * * *
26199466 TCTACTCTACTGCAACTTCAGAGAGATAAGATTCGCTATGGTAGATTCAATTTGACCCATTACAA
1 T-TACTCCACTGCAACTTCAGGGAGATAAGATTCGCTATGGTAGATTCAATCTGACCCACTACAA
* *
26199531 CTTCAGGGGTATAGGATTTGTAGCTTCAAT
65 CTTTAGGGGTATAGGATTTGTAGCTTCAAA
* * * * **
26199561 TTGCTCCACTAG-AACTTCAGGGAGATAAGATTTGCTATGGCA-ACTTCAATCCGACCCGTTACA
1 TTACTCCACT-GCAACTTCAGGGAGATAAGATTCGCTATGGTAGA-TTCAATCTGACCCACTACA
*
26199624 ACTTTAGGGGTATAGGATTTGTAGCTT-TAA
64 ACTTTAGGGGTATAGGATTTGTAGCTTCAAA
* * * *
26199654 TCTACTTCACTGCAGCTTCAGAGAGATAAGATTCGCTATGGTAGATTCAATTTGACCCACTACAA
1 T-TACTCCACTGCAACTTCAGGGAGATAAGATTCGCTATGGTAGATTCAATCTGACCCACTACAA
*
26199719 CTTTAGGGATATAGGATTTGTAGCTTC--A
65 CTTTAGGGGTATAGGATTTGTAGCTTCAAA
* * * *
26199747 TCTGCTCCACTACAACTTCAGGGAGATAA-ATTTTGCTATGGTAGATTCAATC-CAGCCCACTAC
1 T-TACTCCACTGCAACTTCAGGGAGATAAGA-TTCGCTATGGTAGATTCAATCTGA-CCCACTAC
* * *
26199810 AAGTTCAGGGGTATAGGATTTGTAACTTC--A
63 AACTTTAGGGGTATAGGATTTGTAGCTTCAAA
* * ** * * * **
26199840 TCTGCTCCACTGCAACTTCAGGAAGATAAGATTCATTATGGTAGATTTAATCCGACCTACTGTAA
1 T-TACTCCACTGCAACTTCAGGGAGATAAGATTCGCTATGGTAGATTCAATCTGACCCACTACAA
*
26199905 CTTTAGGGGTATAGGATTTTTAGCTTC-AA
65 CTTTAGGGGTATAGGATTTGTAGCTTCAAA
* * * * * **
26199934 TCGT-CTCCACTACAACTTCAAGGATATAAGATTCACTATGGTAGATTCAATCCGACCCACTTTA
1 T--TACTCCACTGCAACTTCAGGGAGATAAGATTCGCTATGGTAGATTCAATCTGACCCACTACA
* * *
26199998 ACTTCAGGGGTATAGGATTTGTAACTT-TAA
64 ACTTTAGGGGTATAGGATTTGTAGCTTCAAA
* * * * * * * *
26200028 TCTACTCCACTGTAACTTTAGGGAAATAAGATTCGCTATGGTA-ACTTTAATGTAACCCATTGCA
1 T-TACTCCACTGCAACTTCAGGGAGATAAGATTCGCTATGGTAGA-TTCAATCTGACCCACTACA
*
26200092 ACTTTAGGGGTATAGGATTTGTAGCTTCAAT
64 ACTTTAGGGGTATAGGATTTGTAGCTTCAAA
* * *
26200123 TTGCTCCACTACAACTTCAGGGAGATAAGATTCGCTATGGTA-ACTTCAATCTGACCCACTGCAA
1 TTACTCCACTGCAACTTCAGGGAGATAAGATTCGCTATGGTAGA-TTCAATCTGACCCACTACAA
* * * *
26200187 CGTCAAGGGTATAAGATTTGTAGCTTC-AA
65 CTTTAGGGGTATAGGATTTGTAGCTTCAAA
* * ** *
26200216 TATGCTCCACTACAACTTCAAAGAGATAAGATTCGCTATGGTA-ACTTCAACCTGACCCACTACA
1 T-TACTCCACTGCAACTTCAGGGAGATAAGATTCGCTATGGTAGA-TTCAATCTGACCCACTACA
* *
26200280 ACTTCATGGGTATAGGATTTGT
64 ACTTTAGGGGTATAGGATTTGT
26200302 GATTTTACTG
Statistics
Matches: 1088, Mismatches: 181, Indels: 74
0.81 0.13 0.06
Matches are distributed among these distances:
92 5 0.00
93 322 0.30
94 601 0.55
95 77 0.07
96 81 0.07
97 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.33
Consensus pattern (94 bp):
TTACTCCACTGCAACTTCAGGGAGATAAGATTCGCTATGGTAGATTCAATCTGACCCACTACAAC
TTTAGGGGTATAGGATTTGTAGCTTCAAA
Found at i:26199121 original size:43 final size:43
Alignment explanation
Indices: 26199040--26199122 Score: 98
Period size: 43 Copynumber: 1.9 Consensus size: 43
26199030 CTATGGCAGA
* *
26199040 TTCAATCTGACCCACTAAAACTTCAAGGATATAGGATTTGTAG
1 TTCAATCTGACCCACTAAAACTTCAAGGAGATAAGATTTGTAG
**
26199083 TTCAATCT-ACTCCACTGCAACTTC-AGGAAGATAAGATTTG
1 TTCAATCTGAC-CCACTAAAACTTCAAGG-AGATAAGATTTG
26199123 CTATGGTAGA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
42 5 0.15
43 29 0.85
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (43 bp):
TTCAATCTGACCCACTAAAACTTCAAGGAGATAAGATTTGTAG
Found at i:26199593 original size:44 final size:44
Alignment explanation
Indices: 26198947--26200285 Score: 242
Period size: 50 Copynumber: 28.5 Consensus size: 44
26198937 TATTATAGTC
* ** *
26198947 TCAATCCGACCCACTGTAACTTCAGGG-GTATAGGATTTGTAGCT
1 TCAATCTGACCCACTACAACTTCAGGGAG-ATAAGATTTGTAGCT
* * * * * *
26198991 TC-ACCTTACTCCATTGCAACTTCAGGGAGATAATATTTTCTATGGCAGAT
1 TCAATCTGAC-CCACTACAACTTCAGGGAGATAAGA-TTTGTA--GC---T
* * * *
26199041 TCAATCTGACCCACTAAAACTTCAAGGATATAGGATTTGTAG-T
1 TCAATCTGACCCACTACAACTTCAGGGAGATAAGATTTGTAGCT
* * *
26199084 TCAATCT-ACTCCACTGCAACTTCAGGAAGATAAGATTTGCTATGGTAGAT
1 TCAATCTGAC-CCACTACAACTTCAGGGAGATAAGA--T--T-T-GTAGCT
* * * *
26199134 TCAATCTGATCCACTGCAACTTTTTAGGG-GTATAGGATTTGTAGCT
1 TCAATCTGACCCACTACAAC--TTCAGGGAG-ATAAGATTTGTAGCT
* * ** * * * *
26199180 TAAATTTGTTCCATTGCAACTTCAAGGAGATAAGATTTCTATGGCAGAT
1 TCAATCTGACCCACTACAACTTCAGGGAGATAAGATTTGTA--GC---T
* * * * * *
26199229 TCAATTTGACGCATTGA-AACTTTA--GAGGTATAGAATTTTTAGCT
1 TCAATCTGACCCACT-ACAACTTCAGGGAGATA-AG-ATTTGTAGCT
* * * * * *
26199273 TAAATAT-ACTCTACTGCAACTTCAGAGAGATAAGATTCGCTATGGTAGAT
1 TCAATCTGAC-CCACTACAACTTCAGGGAGATAAGA-T---T-T-GTAGCT
* * *
26199323 TCAATCTGATCCACTACAACTTTTTAGGG-GTATAGGATTTGTAGCT
1 TCAATCTGACCCACTACAAC--TTCAGGGAG-ATAAGATTTGTAGCT
* * ** * * * *
26199369 TAAATTTGTTCCATTGCAACTTCAAGGAGATAAGATTTCTATGGCAGAT
1 TCAATCTGACCCACTACAACTTCAGGGAGATAAGATTTGTA--GC---T
* * * *
26199418 TCAATCTGACGCATTGA-AACTTTAGGG-G-TATAGAATTTTTAGCT
1 TCAATCTGACCCACT-ACAACTTCAGGGAGATA-AG-ATTTGTAGCT
* * * * *
26199462 TAAATCT-ACTCTACTGCAACTTCAGAGAGATAAGATTCGCTATGGTAGAT
1 TCAATCTGAC-CCACTACAACTTCAGGGAGATAAGA-T---T-T-GTAGCT
* * *
26199512 TCAATTTGACCCATTACAACTTCAGGG-GTATAGGATTTGTAGCT
1 TCAATCTGACCCACTACAACTTCAGGGAG-ATAAGATTTGTAGCT
* *
26199556 TCAATTTG-CTCCACTAGAACTTCAGGGAGATAAGATTTGCTATGGCAACT
1 TCAATCTGAC-CCACTACAACTTCAGGGAGATAAGATTTG-TA--G---CT
* ** * *
26199606 TCAATCCGACCCGTTACAACTTTAGGG-GTATAGGATTTGTAGCT
1 TCAATCTGACCCACTACAACTTCAGGGAG-ATAAGATTTGTAGCT
* * * * * *
26199650 TTAATCT-ACTTCACTGCAGCTTCAGAGAGATAAGATTCGCTATGGTAGAT
1 TCAATCTGAC-CCACTACAACTTCAGGGAGATAAGA-T---T-T-GTAGCT
* * * *
26199700 TCAATTTGACCCACTACAACTTTAGGGATATAGGATTTGTAGCT
1 TCAATCTGACCCACTACAACTTCAGGGAGATAAGATTTGTAGCT
*
26199744 TC-ATCTG-CTCCACTACAACTTCAGGGAGATAA-ATTTTGCTATGGTAGAT
1 TCAATCTGAC-CCACTACAACTTCAGGGAGATAAGA---T--T-T-GTAGCT
* * * *
26199793 TCAATC-CAGCCCACTACAAGTTCAGGG-GTATAGGATTTGTAACT
1 TCAATCTGA-CCCACTACAACTTCAGGGAG-ATAAGATTTGTAGCT
* * *
26199837 TC-ATCTG-CTCCACTGCAACTTCAGGAAGATAAGATTCATTATGGTAGAT
1 TCAATCTGAC-CCACTACAACTTCAGGGAGATAAG----ATT-T-GTAGCT
* * * ** * * *
26199886 TTAATCCGACCTACTGTAACTTTAGGG-GTATAGGATTTTTAGCT
1 TCAATCTGACCCACTACAACTTCAGGGAG-ATAAGATTTGTAGCT
* * * *
26199930 TCAATC-GTCTCCACTACAACTTCAAGGATATAAGATTCACTATGGTAGAT
1 TCAATCTGAC-CCACTACAACTTCAGGGAGATAAGA-T---T-T-GTAGCT
* ** * *
26199980 TCAATCCGACCCACTTTAACTTCAGGG-GTATAGGATTTGTAACT
1 TCAATCTGACCCACTACAACTTCAGGGAG-ATAAGATTTGTAGCT
* ** * * *
26200024 TTAATCT-ACTCCACTGTAACTTTAGGGAAATAAGATTCGCTATGGTAACT
1 TCAATCTGAC-CCACTACAACTTCAGGGAGATAAGA-T---T-T-GTAGCT
* * * * * * *
26200074 TTAATGTAACCCATTGCAACTTTAGGG-GTATAGGATTTGTAGCT
1 TCAATCTGACCCACTACAACTTCAGGGAG-ATAAGATTTGTAGCT
* *
26200118 TCAATTTG-CTCCACTACAACTTCAGGGAGATAAGATTCGCTATGGTAACT
1 TCAATCTGAC-CCACTACAACTTCAGGGAGATAAGA-T---T-T-GTAGCT
* * *
26200168 TCAATCTGACCCACTGCAACGTCAAGGG-TATAAGATTTGTAGCT
1 TCAATCTGACCCACTACAACTTC-AGGGAGATAAGATTTGTAGCT
* ** *
26200212 TCAATATG-CTCCACTACAACTTCAAAGAGATAAGATTCGCTATGGTAACT
1 TCAATCTGAC-CCACTACAACTTCAGGGAGATAAGA-T---T-T-GTAGCT
*
26200262 TCAACCTGACCCACTACAACTTCA
1 TCAATCTGACCCACTACAACTTCA
26200286 TGGGTATAGG
Statistics
Matches: 938, Mismatches: 209, Indels: 290
0.65 0.15 0.20
Matches are distributed among these distances:
42 5 0.01
43 91 0.10
44 270 0.29
45 34 0.04
46 61 0.07
47 23 0.02
48 18 0.02
49 88 0.09
50 300 0.32
51 28 0.03
52 20 0.02
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (44 bp):
TCAATCTGACCCACTACAACTTCAGGGAGATAAGATTTGTAGCT
Found at i:26199686 original size:188 final size:188
Alignment explanation
Indices: 26198947--26200301 Score: 1463
Period size: 188 Copynumber: 7.2 Consensus size: 188
26198937 TATTATAGTC
* ** * ** * *
26198947 TCAATCCGACCCACTGTAACTTCAGGGGTATAGGATTTGTAGCTTCACCTTACTCCA-TTGCAAC
1 TCAATCTGACCCACTACAACTTTAGGGGTATAGGATTTGTAGCTTCAATTTGCTCCACTAG-AAC
* * * * * *
26199011 TTCAGGGAGATAATATTTTCTATGGCAGATTCAATCTGACCCACTAAAACTTCAAGGATATAGGA
65 TTCAGGGAGATAAGATTTGCTATGGCAGATTCAATCTGACCCATTACAACTTCAGGGGTATAGGA
* *
26199076 TTTGTAG-TTCAATCTACTCCACTGCAACTTCAG-GAAGATAAGATTTGCTATGGTAGAT
130 TTTGTAGCTTTAATCTACTCCACTGCAACTTCAGAG-AGATAAGATTCGCTATGGTAGAT
* * * * *
26199134 TCAATCTGATCCACTGCAACTTTTTAGGGGTATAGGATTTGTAGCTTAAATTTGTTCCA-TTGCA
1 TCAATCTGACCCACTACAAC--TTTAGGGGTATAGGATTTGTAGCTTCAATTTGCTCCACTAG-A
* * * * *
26199198 ACTTCAAGGAGATAAGATTT-CTATGGCAGATTCAATTTGACGCATTGA-AACTTTAGAGGTATA
63 ACTTCAGGGAGATAAGATTTGCTATGGCAGATTCAATCTGACCCATT-ACAACTTCAGGGGTATA
* * * * *
26199261 GAATTTTTAGCTTAAATATACTCTACTGCAACTTCAGAGAGATAAGATTCGCTATGGTAGAT
127 GGATTTGTAGCTTTAATCTACTCCACTGCAACTTCAGAGAGATAAGATTCGCTATGGTAGAT
* * * *
26199323 TCAATCTGATCCACTACAACTTTTTAGGGGTATAGGATTTGTAGCTTAAATTTGTTCCA-TTGCA
1 TCAATCTGACCCACTACAAC--TTTAGGGGTATAGGATTTGTAGCTTCAATTTGCTCCACTAG-A
* * *
26199387 ACTTCAAGGAGATAAGATTT-CTATGGCAGATTCAATCTGACGCATTGA-AACTTTAGGGGTATA
63 ACTTCAGGGAGATAAGATTTGCTATGGCAGATTCAATCTGACCCATT-ACAACTTCAGGGGTATA
* * * *
26199450 GAATTTTTAGCTTAAATCTACTCTACTGCAACTTCAGAGAGATAAGATTCGCTATGGTAGAT
127 GGATTTGTAGCTTTAATCTACTCCACTGCAACTTCAGAGAGATAAGATTCGCTATGGTAGAT
* * *
26199512 TCAATTTGACCCATTACAACTTCAGGGGTATAGGATTTGTAGCTTCAATTTGCTCCACTAGAACT
1 TCAATCTGACCCACTACAACTTTAGGGGTATAGGATTTGTAGCTTCAATTTGCTCCACTAGAACT
* * *
26199577 TCAGGGAGATAAGATTTGCTATGGCA-ACTTCAATCCGACCCGTTACAACTTTAGGGGTATAGGA
66 TCAGGGAGATAAGATTTGCTATGGCAGA-TTCAATCTGACCCATTACAACTTCAGGGGTATAGGA
* *
26199641 TTTGTAGCTTTAATCTACTTCACTGCAGCTTCAGAGAGATAAGATTCGCTATGGTAGAT
130 TTTGTAGCTTTAATCTACTCCACTGCAACTTCAGAGAGATAAGATTCGCTATGGTAGAT
* * * *
26199700 TCAATTTGACCCACTACAACTTTAGGGATATAGGATTTGTAGCTTC-ATCTGCTCCACTACAACT
1 TCAATCTGACCCACTACAACTTTAGGGGTATAGGATTTGTAGCTTCAATTTGCTCCACTAGAACT
* * * *
26199764 TCAGGGAGATAA-ATTTTGCTATGGTAGATTCAATC-CAGCCCACTACAAGTTCAGGGGTATAGG
66 TCAGGGAGATAAGA-TTTGCTATGGCAGATTCAATCTGA-CCCATTACAACTTCAGGGGTATAGG
* * * **
26199827 ATTTGTAAC-TTCATCTGCTCCACTGCAACTTCAG-GAAGATAAGATTCATTATGGTAGAT
129 ATTTGTAGCTTTAATCTACTCCACTGCAACTTCAGAG-AGATAAGATTCGCTATGGTAGAT
* * * ** * * *
26199886 TTAATCCGACCTACTGTAACTTTAGGGGTATAGGATTTTTAGCTTCAA-TCGTCTCCACTACAAC
1 TCAATCTGACCCACTACAACTTTAGGGGTATAGGATTTGTAGCTTCAATTTG-CTCCACTAGAAC
* * ** * * *
26199950 TTCAAGGATATAAGATTCACTATGGTAGATTCAATCCGACCCACTT-TAACTTCAGGGGTATAGG
65 TTCAGGGAGATAAGATTTGCTATGGCAGATTCAATCTGACCCA-TTACAACTTCAGGGGTATAGG
* * * * *
26200014 ATTTGTAACTTTAATCTACTCCACTGTAACTTTAGGGAAATAAGATTCGCTATGGTA-ACT
129 ATTTGTAGCTTTAATCTACTCCACTGCAACTTCAGAGAGATAAGATTCGCTATGGTAGA-T
* * * * * *
26200074 TTAATGTAACCCATTGCAACTTTAGGGGTATAGGATTTGTAGCTTCAATTTGCTCCACTACAACT
1 TCAATCTGACCCACTACAACTTTAGGGGTATAGGATTTGTAGCTTCAATTTGCTCCACTAGAACT
* * * * * * *
26200139 TCAGGGAGATAAGATTCGCTATGGTA-ACTTCAATCTGACCCACTGCAACGTCAAGGGTATAAGA
66 TCAGGGAGATAAGATTTGCTATGGCAGA-TTCAATCTGACCCATTACAACTTCAGGGGTATAGGA
* * * * *
26200203 TTTGTAGCTTCAATATGCTCCACTACAACTTCAAAGAGATAAGATTCGCTATGGTA-ACT
130 TTTGTAGCTTTAATCTACTCCACTGCAACTTCAGAGAGATAAGATTCGCTATGGTAGA-T
* * *
26200262 TCAACCTGACCCACTACAACTTCATGGGTATAGGATTTGT
1 TCAATCTGACCCACTACAACTTTAGGGGTATAGGATTTGT
26200302 GATTTTACTG
Statistics
Matches: 1021, Mismatches: 123, Indels: 47
0.86 0.10 0.04
Matches are distributed among these distances:
185 1 0.00
186 83 0.08
187 223 0.22
188 408 0.40
189 305 0.30
190 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (188 bp):
TCAATCTGACCCACTACAACTTTAGGGGTATAGGATTTGTAGCTTCAATTTGCTCCACTAGAACT
TCAGGGAGATAAGATTTGCTATGGCAGATTCAATCTGACCCATTACAACTTCAGGGGTATAGGAT
TTGTAGCTTTAATCTACTCCACTGCAACTTCAGAGAGATAAGATTCGCTATGGTAGAT
Found at i:26202419 original size:17 final size:17
Alignment explanation
Indices: 26202399--26202437 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
26202389 ATTAATTCTA
26202399 TAATTATAGAATTAAAT
1 TAATTATAGAATTAAAT
* * *
26202416 TAATTCTATAATTAATT
1 TAATTATAGAATTAAAT
26202433 TAATT
1 TAATT
26202438 CAAGCGACAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (17 bp):
TAATTATAGAATTAAAT
Found at i:26210140 original size:74 final size:74
Alignment explanation
Indices: 26210046--26210197 Score: 259
Period size: 74 Copynumber: 2.1 Consensus size: 74
26210036 GTCACTCCCC
* *
26210046 AAAAGGTCGATAGTCTGAAGACTAAAGAGGAAACAAATTAAAATTGAATGGAAAAATTAAAAAGA
1 AAAAGGTCGATAGTCTGAAGACTAAAGAAGAAACAAATTAAAATTAAATGGAAAAATTAAAAAGA
26210111 AAAGAAAAA
66 AAAGAAAAA
* *
26210120 AAAAGGTCGATAGTCTGAAGACTAAAGAAGAAACAAATTAAAATTAAATGGCACAATTAAAAAGA
1 AAAAGGTCGATAGTCTGAAGACTAAAGAAGAAACAAATTAAAATTAAATGGAAAAATTAAAAAGA
*
26210185 AAAGAAAAG
66 AAAGAAAAA
26210194 AAAA
1 AAAA
26210198 TTCAAAGTTT
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
74 73 1.00
ACGTcount: A:0.60, C:0.07, G:0.18, T:0.16
Consensus pattern (74 bp):
AAAAGGTCGATAGTCTGAAGACTAAAGAAGAAACAAATTAAAATTAAATGGAAAAATTAAAAAGA
AAAGAAAAA
Found at i:26210877 original size:3 final size:3
Alignment explanation
Indices: 26210871--26210926 Score: 112
Period size: 3 Copynumber: 18.7 Consensus size: 3
26210861 TGTATTCCAT
26210871 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
26210919 TTC TTC TT
1 TTC TTC TT
26210927 TTTTTACAAT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:26211213 original size:32 final size:32
Alignment explanation
Indices: 26211177--26211240 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
26211167 GGCAGTTGGT
26211177 GAACAATTAAAT-GGAGCAGTTAAATTATACAA
1 GAACAATTAAATAGG-GCAGTTAAATTATACAA
26211209 GAACAATTAAATAGGGCAGTTAAATTATACAA
1 GAACAATTAAATAGGGCAGTTAAATTATACAA
26211241 TTAAAATATA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 29 0.94
33 2 0.06
ACGTcount: A:0.50, C:0.09, G:0.16, T:0.25
Consensus pattern (32 bp):
GAACAATTAAATAGGGCAGTTAAATTATACAA
Found at i:26217491 original size:16 final size:14
Alignment explanation
Indices: 26217470--26217508 Score: 60
Period size: 16 Copynumber: 2.6 Consensus size: 14
26217460 TGAACCAAAA
26217470 AAATTAATTAATTT
1 AAATTAATTAATTT
26217484 AGAAATTAATTAATTT
1 --AAATTAATTAATTT
26217500 AAATTAATT
1 AAATTAATT
26217509 GAACAAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 9 0.39
16 14 0.61
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (14 bp):
AAATTAATTAATTT
Found at i:26222658 original size:30 final size:29
Alignment explanation
Indices: 26222617--26222717 Score: 89
Period size: 30 Copynumber: 3.3 Consensus size: 29
26222607 AATAAATTAA
26222617 CATGAATTAATATAAAATGTGAATGAAAAT
1 CATGAATTAATATAAAAT-TGAATGAAAAT
* * * *
26222647 CATGCATTAATACATACATT-AAT-AAATTAA
1 CATGAATTAATATA-AAATTGAATGAAA--AT
*
26222677 CATGAATTAATATAAAATATGCATGAAAAT
1 CATGAATTAATATAAAAT-TGAATGAAAAT
26222707 CATGTAATTAA
1 CATG-AATTAA
26222718 GCATAATTTC
Statistics
Matches: 55, Mismatches: 9, Indels: 13
0.71 0.12 0.17
Matches are distributed among these distances:
28 3 0.05
29 6 0.11
30 32 0.58
31 11 0.20
32 3 0.05
ACGTcount: A:0.51, C:0.08, G:0.09, T:0.32
Consensus pattern (29 bp):
CATGAATTAATATAAAATTGAATGAAAAT
Found at i:26223728 original size:5 final size:5
Alignment explanation
Indices: 26223712--26223742 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
26223702 TGAGCATTCG
*
26223712 ATCGA ATTGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA A
26223743 AATTTTCGAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.42, C:0.16, G:0.19, T:0.23
Consensus pattern (5 bp):
ATCGA
Found at i:26224105 original size:18 final size:19
Alignment explanation
Indices: 26224084--26224124 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
26224074 ATTAAATGTA
*
26224084 AAAATATGATTTTT-TAAT
1 AAAATATGATTTTTAAAAT
*
26224102 AAAA-ATTATTTTTAAAAT
1 AAAATATGATTTTTAAAAT
26224120 AAAAT
1 AAAAT
26224125 GTGAAATTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (19 bp):
AAAATATGATTTTTAAAAT
Found at i:26224408 original size:17 final size:17
Alignment explanation
Indices: 26224358--26224415 Score: 55
Period size: 17 Copynumber: 3.2 Consensus size: 17
26224348 GAGTGAGAAG
*
26224358 TAAAAGTTTAGGGGGAAAA
1 TAAAAGTTT-GAGGG-AAA
*
26224377 TAAAAAGTTT-TGGGAAA
1 T-AAAAGTTTGAGGGAAA
26224394 TAAAAGTTTGAGGGAAA
1 TAAAAGTTTGAGGGAAA
26224411 GTAAA
1 -TAAA
26224416 TAGGGGAGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
16 8 0.24
17 10 0.29
18 7 0.21
19 1 0.03
20 8 0.24
ACGTcount: A:0.48, C:0.00, G:0.28, T:0.24
Consensus pattern (17 bp):
TAAAAGTTTGAGGGAAA
Found at i:26224539 original size:26 final size:26
Alignment explanation
Indices: 26224499--26224548 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
26224489 TGAGATGGAA
*
26224499 GAGAATAAAAGTTTTAAGGGAAAAGT
1 GAGAATAAAAATTTTAAGGGAAAAGT
* **
26224525 GAGAGTAAAAATTTTGGGGGAAAA
1 GAGAATAAAAATTTTAAGGGAAAA
26224549 TAAAAAGTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.48, C:0.00, G:0.30, T:0.22
Consensus pattern (26 bp):
GAGAATAAAAATTTTAAGGGAAAAGT
Found at i:26224776 original size:9 final size:9
Alignment explanation
Indices: 26224762--26224798 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
26224752 TATAGTTTGA
26224762 TATTCGAAT
1 TATTCGAAT
26224771 TATTCGAAT
1 TATTCGAAT
*
26224780 TATTCGAGT
1 TATTCGAAT
26224789 TATTCGAAT
1 TATTCGAAT
26224798 T
1 T
26224799 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:26228348 original size:7 final size:7
Alignment explanation
Indices: 26228336--26228362 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
26228326 AATCGATTGG
26228336 ATTAAAA
1 ATTAAAA
26228343 ATTAAAA
1 ATTAAAA
26228350 ATTAAAA
1 ATTAAAA
26228357 ATTAAA
1 ATTAAA
26228363 TTAATTTAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (7 bp):
ATTAAAA
Found at i:26231603 original size:9 final size:9
Alignment explanation
Indices: 26231589--26231619 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
26231579 TTACTAATTT
26231589 AAAATTTTA
1 AAAATTTTA
26231598 AAAATTTTA
1 AAAATTTTA
26231607 AAAATTTTA
1 AAAATTTTA
26231616 AAAA
1 AAAA
26231620 GCCTATATGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (9 bp):
AAAATTTTA
Found at i:26242374 original size:21 final size:21
Alignment explanation
Indices: 26242344--26242411 Score: 66
Period size: 21 Copynumber: 3.1 Consensus size: 21
26242334 CTCTCAAAGA
*
26242344 AAAAAG-GAAGTGAGTTAGAC
1 AAAAAGAGAAGTGACTTAGAC
** *
26242364 AAAAAGAGAAGCAACTTGGAC
1 AAAAAGAGAAGTGACTTAGAC
26242385 AAAAAGAAACGAAGTGACTTAGAC
1 AAAAAG--A-GAAGTGACTTAGAC
26242409 AAA
1 AAA
26242412 TGTTTTTTGT
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
20 6 0.16
21 16 0.43
23 1 0.03
24 14 0.38
ACGTcount: A:0.54, C:0.10, G:0.24, T:0.12
Consensus pattern (21 bp):
AAAAAGAGAAGTGACTTAGAC
Found at i:26252341 original size:21 final size:21
Alignment explanation
Indices: 26252315--26252357 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
26252305 ATACTTTTTC
* *
26252315 AAAGTATTTTCTTTTGGGTTA
1 AAAGTATTTTCCTTTGGATTA
26252336 AAAGTATTTTCCTTTGGATTA
1 AAAGTATTTTCCTTTGGATTA
26252357 A
1 A
26252358 TAAATGAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.28, C:0.07, G:0.16, T:0.49
Consensus pattern (21 bp):
AAAGTATTTTCCTTTGGATTA
Found at i:26259547 original size:41 final size:41
Alignment explanation
Indices: 26259489--26259727 Score: 290
Period size: 41 Copynumber: 5.8 Consensus size: 41
26259479 TTAAACAGAT
** * * *
26259489 TCACCGGCATTTTGCCTGCTAGGCTTAAAGCCTG-ATTCAGTA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAAT--GTA
* *
26259531 -CACCGGCACTT-AGCCTGCTAGACATATAGTCTGAAATGTA
1 TCACCGGCA-TTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
* *
26259571 TCACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
26259612 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
*
26259653 TCACCGGCATTTAGCCTGCTAGACTTAAAGTCTG-AAT-TA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
* *
26259692 CTTCACCGGCATTAAGCCTGCTAGACGTAACGTCTG
1 --TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTG
26259728 TATTATATTC
Statistics
Matches: 179, Mismatches: 12, Indels: 13
0.88 0.06 0.06
Matches are distributed among these distances:
39 2 0.01
40 8 0.04
41 165 0.92
42 4 0.02
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.28
Consensus pattern (41 bp):
TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
Found at i:26259727 original size:123 final size:122
Alignment explanation
Indices: 26259489--26259717 Score: 320
Period size: 123 Copynumber: 1.9 Consensus size: 122
26259479 TTAAACAGAT
** * *
26259489 TCACCGGCATTTTGCCTGCTAGGCTTAAAGCCTGATTCAGTACACCGGCACTTAGCCTGCTAGAC
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGCCTGAAT-AGTACACCGGCACTTAGCCTGCTAGAC
*
26259554 ATATAGTCTGAAATGTATCACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTA
65 ATAAAGTCTGAAATGTATCACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTA
* *
26259612 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAA-ATGTATCACCGGCATTTAGCCTGCTAGA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGCCTGAATA-GTA-CACCGGCACTTAGCCTGCTAGA
*
26259676 CTTAAAGTCTG-AAT-TACTTCACCGGCATTAAGCCTGCTAGAC
64 CATAAAGTCTGAAATGTA--TCACCGGCATTAAGCCTGCTAGAC
26259718 GTAACGTCTG
Statistics
Matches: 94, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
121 3 0.03
122 6 0.06
123 85 0.90
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.28
Consensus pattern (122 bp):
TCACCGGCATTAAGCCTGCTAGACTTAAAGCCTGAATAGTACACCGGCACTTAGCCTGCTAGACA
TAAAGTCTGAAATGTATCACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTA
Found at i:26262346 original size:17 final size:17
Alignment explanation
Indices: 26262326--26262386 Score: 63
Period size: 17 Copynumber: 3.6 Consensus size: 17
26262316 TGGGTTTAGA
26262326 AATAATATATAAAAAAT
1 AATAATATATAAAAAAT
* *
26262343 AATAAAATATATAAAAT
1 AATAATATATAAAAAAT
* *
26262360 AATTAATA-ATAACATAT
1 AA-TAATATATAAAAAAT
26262377 AAT-ATATATA
1 AATAATATATA
26262387 TGATTTAAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
15 3 0.08
16 4 0.11
17 25 0.69
18 4 0.11
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.33
Consensus pattern (17 bp):
AATAATATATAAAAAAT
Found at i:26266491 original size:110 final size:108
Alignment explanation
Indices: 26266357--26266644 Score: 367
Period size: 105 Copynumber: 2.7 Consensus size: 108
26266347 GATTTTGGGT
* *
26266357 TATTCAATTACTCATC-AGGAAGATTTGATTTTCTTGATTTTTTTTCCTTTTCTTCATCATCTTC
1 TATTTAATTTCTCATCAAGG-AGATTTGATTTTCTTGA-TTTTTTTCC-TTTCTTCATCATCTTC
*
26266421 ACTGTTAGAAAAAAAAAAGATTTAG-GATTTT-AGGCAATTCAACATC
63 ACTGTTAGAAAAAAAAAAGATTTAGTG-TTTTGA-ACAATTCAACATC
* * *
26266467 TATTTAATTTCTCATCAAGGAGATTTGATTTTCTTGATTTTTTTCCATTCTTTATTATCTTCACT
1 TATTTAATTTCTCATCAAGGAGATTTGATTTTCTTGATTTTTTTCCTTTCTTCATCATCTTCACT
*
26266532 GTT---AAAAAAAATGATTTAGTGTTTTGAACAATTCAACATC
66 GTTAGAAAAAAAAAAGATTTAGTGTTTTGAACAATTCAACATC
* * * *
26266572 TATTTAATTTCTTATCAAGGAGATTTGATTTTCCT-A-TTTTTCCCTTTCTTCATCCTCTTCACT
1 TATTTAATTTCTCATCAAGGAGATTTGATTTTCTTGATTTTTTTCCTTTCTTCATCATCTTCACT
*
26266635 ATTAGAAAAA
66 GTTAGAAAAA
26266645 TGAATTTAGG
Statistics
Matches: 157, Mismatches: 15, Indels: 16
0.84 0.08 0.09
Matches are distributed among these distances:
103 24 0.15
104 1 0.01
105 64 0.41
106 6 0.04
108 19 0.12
109 9 0.06
110 31 0.20
111 3 0.02
ACGTcount: A:0.29, C:0.16, G:0.09, T:0.46
Consensus pattern (108 bp):
TATTTAATTTCTCATCAAGGAGATTTGATTTTCTTGATTTTTTTCCTTTCTTCATCATCTTCACT
GTTAGAAAAAAAAAAGATTTAGTGTTTTGAACAATTCAACATC
Found at i:26269623 original size:754 final size:754
Alignment explanation
Indices: 26268172--26269685 Score: 2967
Period size: 754 Copynumber: 2.0 Consensus size: 754
26268162 TATTCAACTA
*
26268172 ATGG-GTGTATTCATAAACGAATTTCGAATAATGTATTTTCTCTCTCGTTGTCCTTTTTTCCTAT
1 ATGGAGTGTATTCATAAACGAATTTCGAATAACGTATTTTCTCTCTCGTTGTCCTTTTTTCCTAT
*
26268236 TAAAGGGATGTAATTTTCATAATTTAGACACATAACAAATTAATATCAAACATCGAATAATTGAG
66 TAAAGGGATGTAATTTTCATAATTTAGACACACAACAAATTAATATCAAACATCGAATAATTGAG
26268301 TTGCAAGCTTTGTGTGTACTTTTTTGGAAAACCCTATATTTATTTTTTTGCCTTTGTTAATCCAA
131 TTGCAAGCTTTGTGTGTACTTTTTTGGAAAACCCTATATTTATTTTTTTGCCTTTGTTAATCCAA
26268366 TTTGTGATCAATATTGAAATGAGTCAACGAGTTAGATCCGCTATTTACTACAACAGTCAAATCTG
196 TTTGTGATCAATATTGAAATGAGTCAACGAGTTAGATCCGCTATTTACTACAACAGTCAAATCTG
26268431 TAGTATAGAGGTCGGGTTGGTATTTCTAGGGCCCTAGTCCATGGAATTGACTTTCAATCCTACCA
261 TAGTATAGAGGTCGGGTTGGTATTTCTAGGGCCCTAGTCCATGGAATTGACTTTCAATCCTACCA
26268496 TTTAATTGTGTGAGCTACGGACTAGAATTAGGAAGAAAGTCGAGGGATCGACTTGGGGAAGAAAT
326 TTTAATTGTGTGAGCTACGGACTAGAATTAGGAAGAAAGTCGAGGGATCGACTTGGGGAAGAAAT
26268561 TCGAGGTTGCAATGTAGATATCTTACTTCCATTGAACCCTACAGGTATGGCCTATTTGATGTGAA
391 TCGAGGTTGCAATGTAGATATCTTACTTCCATTGAACCCTACAGGTATGGCCTATTTGATGTGAA
26268626 TGGTGAGCTCTAGGTCAAGGAGGTCATATTATCACACATTTAAAAAAAAATACTGTAATGGAGTT
456 TGGTGAGCTCTAGGTCAAGGAGGTCATATTATCACACATTTAAAAAAAAATACTGTAATGGAGTT
26268691 GTACGTCGAGTTTGTTGAGGCTAATGGATTTGGCCCATCTTTAGCCACTGTTGCAGCTAATGTTG
521 GTACGTCGAGTTTGTTGAGGCTAATGGATTTGGCCCATCTTTAGCCACTGTTGCAGCTAATGTTG
26268756 AAACTGAAGCTAAAGTAGAAAGTCCTACTACATGGTTGTGTGGTGGGTTCGTTGGCTTGTTACAA
586 AAACTGAAGCTAAAGTAGAAAGTCCTACTACATGGTTGTGTGGTGGGTTCGTTGGCTTGTTACAA
26268821 AGATCCTACTACGATGTCCCCGAAACTTCTATGGGTAGACATTCATCGGTCTTTGGCACGCCTTA
651 AGATCCTACTACGATGTCCCCGAAACTTCTATGGGTAGACATTCATCGGTCTTTGGCACGCCTTA
*
26268886 CATCAATGATGTATATAGACTAAAATGCATGCATAGTGT
716 CATCAATGATGTATATAGACTAAAACGCATGCATAGTGT
*
26268925 ATGGAGTGTATTCATAAATGAATTTCGAATAACGTATTTTCTCTCTCGTTGTCCTTTTTTCCTAT
1 ATGGAGTGTATTCATAAACGAATTTCGAATAACGTATTTTCTCTCTCGTTGTCCTTTTTTCCTAT
26268990 TAAAGGGATGTAATTTTCATAATTTAGACACACAACAAATTAATATCAAACATCGAATAATTGAG
66 TAAAGGGATGTAATTTTCATAATTTAGACACACAACAAATTAATATCAAACATCGAATAATTGAG
26269055 TTGCAAGCTTTGTGTGTACTTTTTTGGAAAACCCTATATTTATTTTTTTGCCTTTGTTAATCCAA
131 TTGCAAGCTTTGTGTGTACTTTTTTGGAAAACCCTATATTTATTTTTTTGCCTTTGTTAATCCAA
*
26269120 TTTGTGATCAATATTGAAATGAGTCAACGAGTTAGATCCGTTATTTACTACAACAGTCAAATCTG
196 TTTGTGATCAATATTGAAATGAGTCAACGAGTTAGATCCGCTATTTACTACAACAGTCAAATCTG
26269185 TAGTATAGAGGTCGGGTTGGTATTTCTAGGGCCCTAGTCCATGGAATTGACTTTCAATCCTACCA
261 TAGTATAGAGGTCGGGTTGGTATTTCTAGGGCCCTAGTCCATGGAATTGACTTTCAATCCTACCA
26269250 TTTAATTGTGTGAGCTACGGACTAGAATTAGGAAGAAAGTCGAGGGATCGACTTGGGGAAGAAAT
326 TTTAATTGTGTGAGCTACGGACTAGAATTAGGAAGAAAGTCGAGGGATCGACTTGGGGAAGAAAT
26269315 TCGAGGTTGCAATGTAGATATCTTACTTCCATTGAACCCTACAGGTATGGCCTATTTGATGTGAA
391 TCGAGGTTGCAATGTAGATATCTTACTTCCATTGAACCCTACAGGTATGGCCTATTTGATGTGAA
26269380 TGGTGAGCTCTAGGTCAAGGAGGTCATATTATCACACATTTAAAAAAAAATACTGTAATGGAGTT
456 TGGTGAGCTCTAGGTCAAGGAGGTCATATTATCACACATTTAAAAAAAAATACTGTAATGGAGTT
26269445 GTACGTCGAGTTTGTTGAGGCTAATGGATTTGGCCCATCTTTAGCCACTGTTGCAGCTAATGTTG
521 GTACGTCGAGTTTGTTGAGGCTAATGGATTTGGCCCATCTTTAGCCACTGTTGCAGCTAATGTTG
26269510 AAACTGAAGCTAAAGTAGAAAGTCCTACTACATGGTTGTGTGGTGGGTTCGTTGGCTTGTTACAA
586 AAACTGAAGCTAAAGTAGAAAGTCCTACTACATGGTTGTGTGGTGGGTTCGTTGGCTTGTTACAA
26269575 AGATCCTACTACGATGTCCCCGAAACTTCTATGGGTAGACATTCATCGGTCTTTGGCACGCCTTA
651 AGATCCTACTACGATGTCCCCGAAACTTCTATGGGTAGACATTCATCGGTCTTTGGCACGCCTTA
26269640 CATCAATGATGTATATAGACTAAAACGCATGCATAGTGT
716 CATCAATGATGTATATAGACTAAAACGCATGCATAGTGT
*
26269679 ATAGAGT
1 ATGGAGT
26269686 CCTGAATTCC
Statistics
Matches: 754, Mismatches: 6, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
753 4 0.01
754 750 0.99
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (754 bp):
ATGGAGTGTATTCATAAACGAATTTCGAATAACGTATTTTCTCTCTCGTTGTCCTTTTTTCCTAT
TAAAGGGATGTAATTTTCATAATTTAGACACACAACAAATTAATATCAAACATCGAATAATTGAG
TTGCAAGCTTTGTGTGTACTTTTTTGGAAAACCCTATATTTATTTTTTTGCCTTTGTTAATCCAA
TTTGTGATCAATATTGAAATGAGTCAACGAGTTAGATCCGCTATTTACTACAACAGTCAAATCTG
TAGTATAGAGGTCGGGTTGGTATTTCTAGGGCCCTAGTCCATGGAATTGACTTTCAATCCTACCA
TTTAATTGTGTGAGCTACGGACTAGAATTAGGAAGAAAGTCGAGGGATCGACTTGGGGAAGAAAT
TCGAGGTTGCAATGTAGATATCTTACTTCCATTGAACCCTACAGGTATGGCCTATTTGATGTGAA
TGGTGAGCTCTAGGTCAAGGAGGTCATATTATCACACATTTAAAAAAAAATACTGTAATGGAGTT
GTACGTCGAGTTTGTTGAGGCTAATGGATTTGGCCCATCTTTAGCCACTGTTGCAGCTAATGTTG
AAACTGAAGCTAAAGTAGAAAGTCCTACTACATGGTTGTGTGGTGGGTTCGTTGGCTTGTTACAA
AGATCCTACTACGATGTCCCCGAAACTTCTATGGGTAGACATTCATCGGTCTTTGGCACGCCTTA
CATCAATGATGTATATAGACTAAAACGCATGCATAGTGT
Found at i:26272791 original size:20 final size:20
Alignment explanation
Indices: 26272753--26272789 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 20
26272743 TTTATATATA
26272753 ATTTAAAGAAAATATTTTAG
1 ATTTAAAGAAAATATTTTAG
*
26272773 ATTTAAA-ATAATATTTT
1 ATTTAAAGAAAATATTTT
26272790 TATCTACAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 9 0.56
20 7 0.44
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (20 bp):
ATTTAAAGAAAATATTTTAG
Found at i:26273640 original size:16 final size:16
Alignment explanation
Indices: 26273619--26273651 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
26273609 TTCGCTGTAT
26273619 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
26273635 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
26273651 T
1 T
26273652 AGCAAATCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.06, G:0.36, T:0.21
Consensus pattern (16 bp):
TGGAATAGAGGCGTAA
Found at i:26273906 original size:18 final size:17
Alignment explanation
Indices: 26273885--26273919 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26273875 TTATTATTAA
*
26273885 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
26273903 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
26273920 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:26274026 original size:18 final size:17
Alignment explanation
Indices: 26274003--26274039 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
26273993 AATTATTATT
26274003 AAATATAT--TTTAATTA
1 AAATATATGATTTAA-TA
26274019 AAATATATGATTTAATA
1 AAATATATGATTTAATA
26274036 AAAT
1 AAAT
26274040 TTAAAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
AAATATATGATTTAATA
Found at i:26274131 original size:44 final size:43
Alignment explanation
Indices: 26274081--26274220 Score: 133
Period size: 44 Copynumber: 3.1 Consensus size: 43
26274071 TATGAATTTG
26274081 TATAATTTAAAATAATTATTATTAAATATAATTTAATAATAATA
1 TATAATTTAAAATAATTATTATTAAATATAATTTAATAAT-ATA
* * * *
26274125 TATAATTTCATAA-AATTCTTGATAATAAAT-T-TTCTTATATGAATTTA
1 TATAATTT-AAAATAATTATT-AT--TAAATATAAT-TTA-AT-AATATA
*
26274172 TATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATA
1 TATAATTTAAAATAATTATTATTAAATATAATTTAATAAT-ATA
26274216 TATAA
1 TATAA
26274221 GTTCATAAAA
Statistics
Matches: 76, Mismatches: 9, Indels: 22
0.71 0.08 0.21
Matches are distributed among these distances:
43 3 0.04
44 28 0.37
45 10 0.13
46 10 0.13
47 22 0.29
48 3 0.04
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (43 bp):
TATAATTTAAAATAATTATTATTAAATATAATTTAATAATATA
Found at i:26274152 original size:91 final size:91
Alignment explanation
Indices: 26274056--26274262 Score: 360
Period size: 91 Copynumber: 2.3 Consensus size: 91
26274046 TAATTATAAC
* *
26274056 TAATAAATTTTCTTATATGAATTTGTATAATTTAAAATAATTATTATTAAATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
* *
26274121 AATATATAATTTCATAAAATTCTTGA
66 AATATATAAGTTCATAAAATTCTTAA
26274147 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
26274212 GATATATAAGTTCATAAAATTCTTAA
66 AATATATAAGTTCATAAAATTCTTAA
*
26274238 TAATAAATATTCTTATATGAATTTA
1 TAATAAATTTTCTTATATGAATTTA
26274263 CTAAAATCAT
Statistics
Matches: 110, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
91 110 1.00
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.46
Consensus pattern (91 bp):
TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
AATATATAAGTTCATAAAATTCTTAA
Found at i:26274239 original size:47 final size:45
Alignment explanation
Indices: 26274103--26274247 Score: 145
Period size: 47 Copynumber: 3.2 Consensus size: 45
26274093 TAATTATTAT
*
26274103 TAAATATAATTTAATAATAATATATAATTTCATAAAATTCTTGATAA
1 TAAATATAATTTAATAAT-ATATATAA-TTCATAAAATTCTTAATAA
* * ** *
26274150 TAAAT-T-TTCTTATATGAATTTATATAATT--TAAAATAATTAATAT
1 TAAATATAAT-TTA-AT-AATATATATAATTCATAAAATTCTTAATAA
26274194 TAAATATAATTTAATAATGATATATAAGTTCATAAAATTCTTAATAA
1 TAAATATAATTTAATAAT-ATATATAA-TTCATAAAATTCTTAATAA
26274241 TAAATAT
1 TAAATAT
26274248 TCTTATATGA
Statistics
Matches: 78, Mismatches: 11, Indels: 18
0.73 0.10 0.17
Matches are distributed among these distances:
43 3 0.04
44 25 0.32
45 7 0.09
46 7 0.09
47 33 0.42
48 3 0.04
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (45 bp):
TAAATATAATTTAATAATATATATAATTCATAAAATTCTTAATAA
Found at i:26279227 original size:249 final size:250
Alignment explanation
Indices: 26278784--26279286 Score: 954
Period size: 249 Copynumber: 2.0 Consensus size: 250
26278774 TTTTCTGGTA
*
26278784 GAAATCATGTCTATGCAAGCAAATATTTTTATGACCAAAACATTAAAACCATCGGATACTCTGTG
1 GAAATCATGTCTATGCAAACAAATATTTTTATGACCAAAACATTAAAACCATCGGATACTCTGTG
*
26278849 TTAAACAAGCAACTTCTTTTGTGTTTTGCAATGTTATTTACAATACAAAACTATTGTACATGCTT
66 TTAAACAAGCAACTTCTTTTGTGTTTTGCAATGTTATTTACAATACAAAACTATCGTACATGCTT
*
26278914 ATACTTGATATGATAAAGGCAAACCTAGTTCAGTCTATCACAAATCAAACACCTAAAAACCAACC
131 ATACTTGATATGATAAAGGCAAACCCAGTTCAGTCTATCACAAATCAAACACCTAAAAACCAACC
26278979 AAAATAAGAAATTCACAACAGTATCATACTGTACCAAAATCAGCAGCAGCACAAT
196 AAAATAAGAAATTCACAACAGTATCATACTGTACCAAAATCAGCAGCAGCACAAT
26279034 GAAA-CATGTCTATGCAAACAAATATTTTTATGACCAAAACATTAAAACCATCGGATACTCTGTG
1 GAAATCATGTCTATGCAAACAAATATTTTTATGACCAAAACATTAAAACCATCGGATACTCTGTG
*
26279098 TTAAACAAGCAACTTCTTTTGTGTTTTGCAGTGTTATTTACAATACAAAACTATCGTACATGCTT
66 TTAAACAAGCAACTTCTTTTGTGTTTTGCAATGTTATTTACAATACAAAACTATCGTACATGCTT
26279163 ATACTTGATATGATAAAGGCAAACCCAGTTCAGTCTATCACAAATCAAACACCTAAAAACCAACC
131 ATACTTGATATGATAAAGGCAAACCCAGTTCAGTCTATCACAAATCAAACACCTAAAAACCAACC
*
26279228 AAAATAAGAAATTCACAACAGTATCATATTGTACCAAAATCAGCAGCAGCACAAT
196 AAAATAAGAAATTCACAACAGTATCATACTGTACCAAAATCAGCAGCAGCACAAT
26279283 GAAA
1 GAAA
26279287 GCAGCCACAA
Statistics
Matches: 248, Mismatches: 5, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
249 244 0.98
250 4 0.02
ACGTcount: A:0.41, C:0.20, G:0.11, T:0.27
Consensus pattern (250 bp):
GAAATCATGTCTATGCAAACAAATATTTTTATGACCAAAACATTAAAACCATCGGATACTCTGTG
TTAAACAAGCAACTTCTTTTGTGTTTTGCAATGTTATTTACAATACAAAACTATCGTACATGCTT
ATACTTGATATGATAAAGGCAAACCCAGTTCAGTCTATCACAAATCAAACACCTAAAAACCAACC
AAAATAAGAAATTCACAACAGTATCATACTGTACCAAAATCAGCAGCAGCACAAT
Found at i:26279438 original size:53 final size:53
Alignment explanation
Indices: 26279375--26279480 Score: 185
Period size: 53 Copynumber: 2.0 Consensus size: 53
26279365 GCAGTGGATT
*
26279375 TCAAAAACCACAAAAAATGACAGGAAAAAAATGAAAAAAGAGCCCGAGAGAGA
1 TCAAAAACCACAAAAAATGACAGGAAAAAAATGAAAAAAGAGACCGAGAGAGA
* *
26279428 TCAAAAACCACAACAAATGACAGGGAAAAAATGAAAAAAGAGACCGAGAGAGA
1 TCAAAAACCACAAAAAATGACAGGAAAAAAATGAAAAAAGAGACCGAGAGAGA
26279481 GAATTGTTAA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 50 1.00
ACGTcount: A:0.59, C:0.15, G:0.20, T:0.06
Consensus pattern (53 bp):
TCAAAAACCACAAAAAATGACAGGAAAAAAATGAAAAAAGAGACCGAGAGAGA
Found at i:26281004 original size:25 final size:26
Alignment explanation
Indices: 26280952--26281000 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
26280942 TATATATTAC
26280952 TTTTTTTATTAATATTAAGATTTAAT
1 TTTTTTTATTAATATTAAGATTTAAT
* *
26280978 TTTTTTTGTT-ATTTTAAG-TTTAA
1 TTTTTTTATTAATATTAAGATTTAA
26281001 ATTTAAGTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 5 0.24
25 7 0.33
26 9 0.43
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (26 bp):
TTTTTTTATTAATATTAAGATTTAAT
Found at i:26283792 original size:5 final size:5
Alignment explanation
Indices: 26283782--26283806 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
26283772 ATATGGTCAA
26283782 CGGGT CGGGT CGGGT CGGGT CGGGT
1 CGGGT CGGGT CGGGT CGGGT CGGGT
26283807 GGCACCTGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.20, G:0.60, T:0.20
Consensus pattern (5 bp):
CGGGT
Found at i:26284040 original size:17 final size:16
Alignment explanation
Indices: 26283996--26284043 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
26283986 AATGAACGGT
*
26283996 AGAGAAAAA-AAAAAG
1 AGAGAAAAAGAAGAAG
*
26284011 AGAGAAAGGAGAAGAAG
1 AGAGAAA-AAGAAGAAG
26284028 AGAAGAAAAAGAAGAA
1 AG-AGAAAAAGAAGAA
26284044 AGGTAATGTA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
15 7 0.26
16 1 0.04
17 14 0.52
18 5 0.19
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (16 bp):
AGAGAAAAAGAAGAAG
Found at i:26284198 original size:82 final size:81
Alignment explanation
Indices: 26284129--26284348 Score: 286
Period size: 80 Copynumber: 2.7 Consensus size: 81
26284119 TATTAATTAT
*
26284129 TAATTATAAATTAT-TTATATTTAGTGTTTATAG-TTTGGATTAGTATTTTGTATGAATATTCTA
1 TAATTAT--ATTATATTA-ATTTAGTATTTATAGTTTTGGATTAGTATTTTGTATGAATATTCTA
26284192 ATTTTTTGTATGAATATTG
63 ATTTTTTGTATGAATATTG
* * *
26284211 TAATTATTTTATAATTAATTTTGTATTTATAGTTTTGGATTAGTATTTTGTATGAATATTGTAA-
1 TAATTATATTAT-ATTAATTTAGTATTTATAGTTTTGGATTAGTATTTTGTATGAATATTCTAAT
*
26284275 -TATTGTATGAATATTG
65 TTTTTGTATGAATATTG
* *
26284291 TAATTATTTTATAATTAATTTTGTATTTATAGTTTTGGATTAGTATTTATGTAATGAA
1 TAATTATATTAT-ATTAATTTAGTATTTATAGTTTTGGATTAGTATTT-TGT-ATGAA
26284349 GTACATATCA
Statistics
Matches: 128, Mismatches: 5, Indels: 10
0.90 0.03 0.07
Matches are distributed among these distances:
80 67 0.52
81 16 0.12
82 45 0.35
ACGTcount: A:0.31, C:0.00, G:0.13, T:0.55
Consensus pattern (81 bp):
TAATTATATTATATTAATTTAGTATTTATAGTTTTGGATTAGTATTTTGTATGAATATTCTAATT
TTTTGTATGAATATTG
Found at i:26284199 original size:21 final size:22
Alignment explanation
Indices: 26284172--26284220 Score: 82
Period size: 21 Copynumber: 2.3 Consensus size: 22
26284162 TTTGGATTAG
26284172 TATTTTGTATGAATATTCTAAT
1 TATTTTGTATGAATATTCTAAT
*
26284194 T-TTTTGTATGAATATTGTAAT
1 TATTTTGTATGAATATTCTAAT
26284215 TATTTT
1 TATTTT
26284221 ATAATTAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 20 0.80
22 5 0.20
ACGTcount: A:0.29, C:0.02, G:0.10, T:0.59
Consensus pattern (22 bp):
TATTTTGTATGAATATTCTAAT
Found at i:26284282 original size:19 final size:19
Alignment explanation
Indices: 26284258--26284294 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
26284248 GATTAGTATT
26284258 TTGTATGAATATTGTAATA
1 TTGTATGAATATTGTAATA
26284277 TTGTATGAATATTGTAAT
1 TTGTATGAATATTGTAAT
26284295 TATTTTATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.00, G:0.16, T:0.49
Consensus pattern (19 bp):
TTGTATGAATATTGTAATA
Found at i:26284303 original size:80 final size:81
Alignment explanation
Indices: 26284155--26284348 Score: 329
Period size: 80 Copynumber: 2.4 Consensus size: 81
26284145 ATATTTAGTG
*
26284155 TTTATAG-TTTGGATTAGTATTTTGTATGAATATTCTAATTTTTTGTATGAATATTGTAATTATT
1 TTTATAGTTTTGGATTAGTATTTTGTATGAATATTCTAA-TTATTGTATGAATATTGTAATTATT
26284219 TTATAATTAATTTTGTA
65 TTATAATTAATTTTGTA
*
26284236 TTTATAGTTTTGGATTAGTATTTTGTATGAATATTGTAA-TATTGTATGAATATTGTAATTATTT
1 TTTATAGTTTTGGATTAGTATTTTGTATGAATATTCTAATTATTGTATGAATATTGTAATTATTT
26284300 TATAATTAATTTTGTA
66 TATAATTAATTTTGTA
26284316 TTTATAGTTTTGGATTAGTATTTATGTAATGAA
1 TTTATAGTTTTGGATTAGTATTT-TGT-ATGAA
26284349 GTACATATCA
Statistics
Matches: 108, Mismatches: 2, Indels: 5
0.94 0.02 0.04
Matches are distributed among these distances:
80 63 0.58
81 10 0.09
82 35 0.32
ACGTcount: A:0.30, C:0.01, G:0.14, T:0.55
Consensus pattern (81 bp):
TTTATAGTTTTGGATTAGTATTTTGTATGAATATTCTAATTATTGTATGAATATTGTAATTATTT
TATAATTAATTTTGTA
Found at i:26284721 original size:15 final size:15
Alignment explanation
Indices: 26284701--26284733 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
26284691 CTGCCACGAC
26284701 ATGTGTACATGGATA
1 ATGTGTACATGGATA
26284716 ATGTGTACATGGATA
1 ATGTGTACATGGATA
26284731 ATG
1 ATG
26284734 AAGTGTTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.33, C:0.06, G:0.27, T:0.33
Consensus pattern (15 bp):
ATGTGTACATGGATA
Done.