Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 78 of 284
Found at i:26287425 original size:27 final size:27
Alignment explanation
Indices: 26287363--26287431 Score: 77
Period size: 27 Copynumber: 2.6 Consensus size: 27
26287353 GAAAAATCAG
*
26287363 ACCATTGGCGCCTCTTAACATGGCACC
1 ACCATTGGCGCCTCTCAACATGGCACC
* * *
26287390 ACTAATGGCGCCTCTC-AGATAGGCACC
1 ACCATTGGCGCCTCTCAACAT-GGCACC
*
26287417 ACCATTGGCACCTCT
1 ACCATTGGCGCCTCT
26287432 GAACTATGTA
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
26 3 0.09
27 31 0.91
ACGTcount: A:0.23, C:0.36, G:0.19, T:0.22
Consensus pattern (27 bp):
ACCATTGGCGCCTCTCAACATGGCACC
Found at i:26292553 original size:50 final size:51
Alignment explanation
Indices: 26292465--26292644 Score: 184
Period size: 51 Copynumber: 3.5 Consensus size: 51
26292455 AAAGTGATGG
* * * * * *
26292465 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGA-A-CGAAAGG
1 TCACATGTGTAGTACTATGTGCAGGCTAGTATGCGTACCAGATAGC-AAAGA
* * ***
26292515 TCGCATGTGTAGTACTATGTGCAGGCTAGTATGCGTACCGGATAGCTTCGA
1 TCACATGTGTAGTACTATGTGCAGGCTAGTATGCGTACCAGATAGCAAAGA
* * ***
26292566 TCACGTGTGTAGTACTATGTGCAGGCTAGTATGCGTACCGGATAGCTTCGA
1 TCACATGTGTAGTACTATGTGCAGGCTAGTATGCGTACCAGATAGCAAAGA
*
26292617 TCACGTGTGTAGTACTATGTGCAGGCTA
1 TCACATGTGTAGTACTATGTGCAGGCTA
26292645 CTACATGTGT
Statistics
Matches: 115, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
50 35 0.30
51 79 0.69
52 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (51 bp):
TCACATGTGTAGTACTATGTGCAGGCTAGTATGCGTACCAGATAGCAAAGA
Found at i:26292585 original size:51 final size:51
Alignment explanation
Indices: 26292520--26292644 Score: 250
Period size: 51 Copynumber: 2.5 Consensus size: 51
26292510 AAAGGTCGCA
26292520 TGTGTAGTACTATGTGCAGGCTAGTATGCGTACCGGATAGCTTCGATCACG
1 TGTGTAGTACTATGTGCAGGCTAGTATGCGTACCGGATAGCTTCGATCACG
26292571 TGTGTAGTACTATGTGCAGGCTAGTATGCGTACCGGATAGCTTCGATCACG
1 TGTGTAGTACTATGTGCAGGCTAGTATGCGTACCGGATAGCTTCGATCACG
26292622 TGTGTAGTACTATGTGCAGGCTA
1 TGTGTAGTACTATGTGCAGGCTA
26292645 CTACATGTGT
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 74 1.00
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (51 bp):
TGTGTAGTACTATGTGCAGGCTAGTATGCGTACCGGATAGCTTCGATCACG
Found at i:26292672 original size:102 final size:101
Alignment explanation
Indices: 26292566--26292749 Score: 251
Period size: 102 Copynumber: 1.8 Consensus size: 101
26292556 ATAGCTTCGA
* * * * * *
26292566 TCACGTGTGTAGTACTATGTGCAGGCTAGTATGCGTACCGGATAGCTTCGATCACGTGTGTAGTA
1 TCACGGGTGTAGTACTATGTGCAGGCTACTACGCGAACCGAAAAG-TTCGATCACGTGTGTAGTA
*
26292631 CTATGTGCAGGCTACTACATGTGTTGGATATTAATGG
65 CTATGTGAAGGCTACTACATGTGTTGGATATTAATGG
* * * *
26292668 TCACGGGTTTAGTACTATGTGCAGGCTACTACGTGAACCGAAAAGTTTGCTCACGTGTGTAGTAC
1 TCACGGGTGTAGTACTATGTGCAGGCTACTACGCGAACCGAAAAGTTCGATCACGTGTGTAGTAC
*
26292733 TATGTGAAGGTTACTAC
66 TATGTGAAGGCTACTAC
26292750 GTGTATCGAA
Statistics
Matches: 70, Mismatches: 12, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
101 33 0.47
102 37 0.53
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (101 bp):
TCACGGGTGTAGTACTATGTGCAGGCTACTACGCGAACCGAAAAGTTCGATCACGTGTGTAGTAC
TATGTGAAGGCTACTACATGTGTTGGATATTAATGG
Found at i:26307290 original size:77 final size:81
Alignment explanation
Indices: 26307209--26307380 Score: 226
Period size: 83 Copynumber: 2.1 Consensus size: 81
26307199 ACGACATGAT
* * *
26307209 TAAATCCTGAAACAAAATTATTTAATTAAATCTT-GTTTGGAAACAAAATC-A-A-AATAAAATT
1 TAAATCCCGAAACAAAATTATTTAATTAAATATTCGTTTGGAAACAAAATCAAGACAATAAAATC
26307270 TATTAAACGGTAGGAA
66 TATTAAACGGTAGGAA
* * *
26307286 TAAATCCCAAAACAAAATTATTTGATTAAGTATTCGTTTGGAAACAAAATCAAGATCGAATAAAA
1 TAAATCCCGAAACAAAATTATTTAATTAAATATTCGTTTGGAAACAAAATCAAGA-C-AATAAAA
* *
26307351 TCTGTTAAATGGTAGGAA
64 TCTATTAAACGGTAGGAA
26307369 TAAATCCCGAAA
1 TAAATCCCGAAA
26307381 AAATTAGTCA
Statistics
Matches: 80, Mismatches: 9, Indels: 6
0.84 0.09 0.06
Matches are distributed among these distances:
77 29 0.36
78 16 0.20
79 1 0.01
80 1 0.01
83 33 0.41
ACGTcount: A:0.48, C:0.11, G:0.12, T:0.29
Consensus pattern (81 bp):
TAAATCCCGAAACAAAATTATTTAATTAAATATTCGTTTGGAAACAAAATCAAGACAATAAAATC
TATTAAACGGTAGGAA
Found at i:26307369 original size:83 final size:77
Alignment explanation
Indices: 26307171--26307381 Score: 215
Period size: 77 Copynumber: 2.6 Consensus size: 77
26307161 ATTAAATTCT
* * * * ** * * **
26307171 GAAACATAATCAAAATCAAGTCTGTTAAACGACATGATTAAATCCTGAAACAAAATTATTTAATT
1 GAAACAAAATCAAAATAAAATCTATTAAACGGTAGGAATAAATCCCAAAACAAAATTATTTAATT
*
26307236 AAATCTTGTTTG
66 AAATATTGTTTG
* *
26307248 GAAACAAAATCAAAATAAAATTTATTAAACGGTAGGAATAAATCCCAAAACAAAATTATTTGATT
1 GAAACAAAATCAAAATAAAATCTATTAAACGGTAGGAATAAATCCCAAAACAAAATTATTTAATT
*
26307313 AAGTATTCGTTTG
66 AAATATT-GTTTG
* *
26307326 GAAACAAAATCAAGATCGAATAAAATCTGTTAAATGGTAGGAATAAATCCCGAAAA
1 GAAACAAAATC-A-A---AATAAAATCTATTAAACGGTAGGAATAAATCCC-AAAA
26307382 AATTAGTCAA
Statistics
Matches: 110, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
77 58 0.53
78 16 0.15
79 1 0.01
80 1 0.01
83 30 0.27
84 4 0.04
ACGTcount: A:0.48, C:0.12, G:0.12, T:0.28
Consensus pattern (77 bp):
GAAACAAAATCAAAATAAAATCTATTAAACGGTAGGAATAAATCCCAAAACAAAATTATTTAATT
AAATATTGTTTG
Found at i:26307602 original size:86 final size:84
Alignment explanation
Indices: 26307413--26307606 Score: 194
Period size: 86 Copynumber: 2.2 Consensus size: 84
26307403 TTTGGGAGCA
* * * * * *
26307413 AAATAAAAATTGAATAAAATCTGTTAAATGGCGGGAATAAATCCCGAAATATATTTTATTTTATT
1 AAATAAAAAATGAATAAAAT-TGTTAAACGACGAGAATAAATCCCGAAATAGATTTTATTTAATT
* *
26307478 TAATTTCTCGTTTGGCAACT
65 TAATTACTCGTTTGGCAAAT
* ***
26307498 AAATATAAAACTGGAATAAAATTGTTAAACGACGAGAATAAATTTTGAAATAGATTTTATTTAAT
1 AAATA-AAAAAT-GAATAAAATTGTTAAACGACGAGAATAAATCCCGAAATAGATTTTATTTAA-
*
26307563 TTTAA-TACTCATTTTGG-AAAT
63 TTTAATTACTC-GTTTGGCAAAT
26307584 AACATAAAAAATGAAATAAAATT
1 AA-ATAAAAAATG-AATAAAATT
26307607 TATTAAACAA
Statistics
Matches: 90, Mismatches: 13, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
85 6 0.07
86 62 0.69
87 22 0.24
ACGTcount: A:0.45, C:0.08, G:0.11, T:0.36
Consensus pattern (84 bp):
AAATAAAAAATGAATAAAATTGTTAAACGACGAGAATAAATCCCGAAATAGATTTTATTTAATTT
AATTACTCGTTTGGCAAAT
Found at i:26307656 original size:65 final size:66
Alignment explanation
Indices: 26307554--26307679 Score: 173
Period size: 65 Copynumber: 1.9 Consensus size: 66
26307544 GAAATAGATT
* * * *
26307554 TTATTTAATTTTAATACTCATTTTGGAAATAACATAAAAAATGAAATAAAATTTATTAAACAAAT
1 TTATTTAATTTTAATACTCAGTTTGGAAACAAAATAAAAAATGAAATAAAATCTATTAAACAAAT
26307619 C
66 C
* * * *
26307620 TTATTTAATTTTAATTCTC-GTTTGGAAACAAAATAAAAAATGGAGTAAAATCTGTTAAAC
1 TTATTTAATTTTAATACTCAGTTTGGAAACAAAATAAAAAATGAAATAAAATCTATTAAAC
26307680 GGTGGGAATA
Statistics
Matches: 52, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
65 34 0.65
66 18 0.35
ACGTcount: A:0.47, C:0.08, G:0.08, T:0.37
Consensus pattern (66 bp):
TTATTTAATTTTAATACTCAGTTTGGAAACAAAATAAAAAATGAAATAAAATCTATTAAACAAAT
C
Found at i:26308363 original size:20 final size:20
Alignment explanation
Indices: 26308335--26308388 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
26308325 TTTAAAGGAG
* *
26308335 AAATTAAATCAATTTGATTA
1 AAATCAAATCAATTTAATTA
* *
26308355 AAATCAAATCAAATTAATTG
1 AAATCAAATCAATTTAATTA
*
26308375 AAATCAAATAAATT
1 AAATCAAATCAATT
26308389 AGGATATATG
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.56, C:0.07, G:0.04, T:0.33
Consensus pattern (20 bp):
AAATCAAATCAATTTAATTA
Found at i:26309558 original size:17 final size:18
Alignment explanation
Indices: 26309521--26309558 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
26309511 TAATATTTTA
*
26309521 ATTTATTAAATAAATAAC
1 ATTTATTAAATAAAGAAC
*
26309539 ATTTATTAAAT-TAGAAC
1 ATTTATTAAATAAAGAAC
26309556 ATT
1 ATT
26309559 AACTAAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (18 bp):
ATTTATTAAATAAAGAAC
Found at i:26318882 original size:25 final size:24
Alignment explanation
Indices: 26318802--26318883 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 24
26318792 CATATAAACA
* *
26318802 GGAAGCTCTTACGAGCCATATAACG
1 GGAAGCTCATACGAGCC-TATAATG
**
26318827 GGAAGCTCATGTGAG-CTAAGTAATG
1 GGAAGCTCATACGAGCCT-A-TAATG
* *
26318852 GAAAGCTCATACGAGCCGTATATTG
1 GGAAGCTCATACGAGCC-TATAATG
26318877 GGAAGCT
1 GGAAGCT
26318884 TTTGCAAGCC
Statistics
Matches: 44, Mismatches: 9, Indels: 8
0.72 0.15 0.13
Matches are distributed among these distances:
23 1 0.02
24 2 0.05
25 38 0.86
26 2 0.05
27 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.28, T:0.22
Consensus pattern (24 bp):
GGAAGCTCATACGAGCCTATAATG
Found at i:26335045 original size:13 final size:13
Alignment explanation
Indices: 26335027--26335053 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
26335017 AATATAAGAC
26335027 ACATAAAAATCAA
1 ACATAAAAATCAA
26335040 ACATAAAAATCAA
1 ACATAAAAATCAA
26335053 A
1 A
26335054 GCATGATTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.70, C:0.15, G:0.00, T:0.15
Consensus pattern (13 bp):
ACATAAAAATCAA
Found at i:26340187 original size:23 final size:23
Alignment explanation
Indices: 26340120--26340187 Score: 54
Period size: 19 Copynumber: 3.1 Consensus size: 23
26340110 AATATGAAAA
*
26340120 AAAAGAAATACATAACAATTTTTT
1 AAAA-AAATACATAATAATTTTTT
** * *
26340144 AAAACTATA-AT-AT-A-GTGTT
1 AAAAAAATACATAATAATTTTTT
26340163 AAAAAAATACATAATAATTTTTT
1 AAAAAAATACATAATAATTTTTT
26340186 AA
1 AA
26340188 TACTACTTAT
Statistics
Matches: 31, Mismatches: 9, Indels: 9
0.63 0.18 0.18
Matches are distributed among these distances:
19 10 0.32
20 3 0.10
21 3 0.10
22 3 0.10
23 8 0.26
24 4 0.13
ACGTcount: A:0.54, C:0.06, G:0.04, T:0.35
Consensus pattern (23 bp):
AAAAAAATACATAATAATTTTTT
Found at i:26340927 original size:15 final size:16
Alignment explanation
Indices: 26340900--26340931 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
26340890 CTTTTTACTC
26340900 TAATATAACATACTTG
1 TAATATAACATACTTG
26340916 TAATATAA-ATACTTG
1 TAATATAACATACTTG
26340931 T
1 T
26340932 GGAATAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.44, C:0.09, G:0.06, T:0.41
Consensus pattern (16 bp):
TAATATAACATACTTG
Found at i:26343160 original size:15 final size:15
Alignment explanation
Indices: 26343131--26343161 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
26343121 ATAGATGTAT
26343131 AATATAATATTAAAA
1 AATATAATATTAAAA
26343146 AATA-AATATTAAAA
1 AATATAATATTAAAA
26343160 AA
1 AA
26343162 GACATATGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.75
15 4 0.25
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (15 bp):
AATATAATATTAAAA
Found at i:26350230 original size:37 final size:35
Alignment explanation
Indices: 26350187--26350284 Score: 106
Period size: 36 Copynumber: 2.7 Consensus size: 35
26350177 ATCATTAAAA
* *
26350187 ACAGGTCTAACCCAACTTTTTTTAAAATTACTTTAG
1 ACAGGTCTATCCCAAC-TTTTTTAAAATTACTTTAC
* ** *
26350223 ACAAGGTCTATCTCAACTTTTTTAAGGTTGCTTTAC
1 AC-AGGTCTATCCCAACTTTTTTAAAATTACTTTAC
*
26350259 ACAGGTCTATCCTAACCTTTTTTAAA
1 ACAGGTCTATCCCAA-CTTTTTTAAA
26350285 GGTTGCCTTA
Statistics
Matches: 51, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
35 11 0.22
36 28 0.55
37 12 0.24
ACGTcount: A:0.30, C:0.20, G:0.10, T:0.40
Consensus pattern (35 bp):
ACAGGTCTATCCCAACTTTTTTAAAATTACTTTAC
Found at i:26350318 original size:73 final size:73
Alignment explanation
Indices: 26350187--26350544 Score: 322
Period size: 73 Copynumber: 4.9 Consensus size: 73
26350177 ATCATTAAAA
* * * * * * * *
26350187 ACAGGTCTAACCCAACTTTTTTTAAA-ATTACTTTAGACAAGGT-CTATCTCAACTTTTTTAAGG
1 ACAGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACATGGTGC-ATCCCAACCTTTTTAAGG
* *
26350250 TTGCTTTAC
65 TTGCCTTAG
* *
26350259 ACAGGTCTATCCTAACCTTTTTTAAAGGTTGCCTTAGACATGGTGCAACCCAACCTTTTTAAGGT
1 ACAGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACATGGTGCATCCCAACCTTTTTAAGGT
* *
26350324 TGTCTTAA
66 TGCCTTAG
* * * *
26350332 ACAGGTCTAT-CCAACCTTTTCTTATAGGTTGTCTTAGACAAGGT-CTATCCTAACCTTTTTAAG
1 ACAGGTCTATCCCAACCTTTT-TTAAAGGTTGCCTTAGACATGGTGC-ATCCCAACCTTTTTAAG
26350395 GTTGCCTTAG
64 GTTGCCTTAG
* * * * *
26350405 ACAGCTCTATCCCAATCATTTTTAAAAGTTTCCTTAGACAAGTGGTG--TCCCAACCTTTTTAAG
1 ACAGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGAC-A-TGGTGCATCCCAACCTTTTTAAG
*
26350468 GTTACCTTAG
64 GTTGCCTTAG
* **
26350478 ACAAGGTTTATCCCAACC-TTTTT-AAGGTTGCCTTAG--ATGGGTTTATCCCAACCTATTTTAA
1 AC-AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAT-GGTGCATCCCAACCT-TTTT-A
26350539 AGGTTG
62 AGGTTG
26350545 GTCTTGATTA
Statistics
Matches: 234, Mismatches: 38, Indels: 27
0.78 0.13 0.09
Matches are distributed among these distances:
68 1 0.00
69 4 0.02
71 9 0.04
72 48 0.21
73 147 0.63
74 22 0.09
75 3 0.01
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.37
Consensus pattern (73 bp):
ACAGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACATGGTGCATCCCAACCTTTTTAAGGT
TGCCTTAG
Found at i:26350391 original size:146 final size:145
Alignment explanation
Indices: 26350219--26350514 Score: 368
Period size: 146 Copynumber: 2.0 Consensus size: 145
26350209 TAAAATTACT
* * * * *
26350219 TTAGACAAGGTCTATCTCAACTTTTTTAAGGTTGCTTTACACAGGTCTATCCTAACCTTTTTTAA
1 TTAGACAAGGTCTATCTCAACCTTTTTAAGGTTGCCTTACACAGCTCTATCCCAACCATTTTTAA
* **
26350284 AGGTTGCCTTAGAC-A-TGGTGCAACCCAACCTTTTTAAGGTTGTCTTAAAC-AGGTCTAT-CCA
66 AAGTTGCCTTAGACAAGTGGTG--ACCCAACCTTTTTAAGGTTACCTTAAACAAGGTCTATCCCA
*
26350345 ACCTTTTCTTATAGGTTGTC
129 ACC-TTT-TTA-AGGTTGCC
* *
26350365 TTAGACAAGGTCTATC-CTAACCTTTTTAAGGTTGCCTTAGACAGCTCTATCCCAATCATTTTTA
1 TTAGACAAGGTCTATCTC-AACCTTTTTAAGGTTGCCTTACACAGCTCTATCCCAACCATTTTTA
* * * *
26350429 AAAGTTTCCTTAGACAAGTGGTGTCCCAACCTTTTTAAGGTTACCTTAGACAAGGTTTATCCCAA
65 AAAGTTGCCTTAGACAAGTGGTGACCCAACCTTTTTAAGGTTACCTTAAACAAGGTCTATCCCAA
26350494 CCTTTTTAAGGTTGCC
130 CCTTTTTAAGGTTGCC
26350510 TTAGA
1 TTAGA
26350515 TGGGTTTATC
Statistics
Matches: 130, Mismatches: 15, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
145 13 0.10
146 95 0.73
147 11 0.08
148 11 0.08
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.37
Consensus pattern (145 bp):
TTAGACAAGGTCTATCTCAACCTTTTTAAGGTTGCCTTACACAGCTCTATCCCAACCATTTTTAA
AAGTTGCCTTAGACAAGTGGTGACCCAACCTTTTTAAGGTTACCTTAAACAAGGTCTATCCCAAC
CTTTTTAAGGTTGCC
Found at i:26350404 original size:36 final size:36
Alignment explanation
Indices: 26350219--26350544 Score: 306
Period size: 36 Copynumber: 8.9 Consensus size: 36
26350209 TAAAATTACT
* * *
26350219 TTAGACAAGGTCTATCTCAACTTTTTTAAGGTTGCT
1 TTAGACAAGGTCTATCCCAACCTTTTTAAGGTTGCC
* *
26350255 TTACAC-AGGTCTATCCTAACCTTTTTTAAAGGTTGCC
1 TTAGACAAGGTCTATCCCAACC-TTTTT-AAGGTTGCC
* * *
26350292 TTAGACATGGTGC-AACCCAACCTTTTTAAGGTTGTC
1 TTAGACAAGGT-CTATCCCAACCTTTTTAAGGTTGCC
* *
26350328 TTAAAC-AGGTCTAT-CCAACCTTTTCTTATAGGTTGTC
1 TTAGACAAGGTCTATCCCAACC-TTT-TTA-AGGTTGCC
*
26350365 TTAGACAAGGTCTATCCTAACCTTTTTAAGGTTGCC
1 TTAGACAAGGTCTATCCCAACCTTTTTAAGGTTGCC
* * * *
26350401 TTAGAC-AGCTCTATCCCAATCATTTTTAAAAGTTTCC
1 TTAGACAAGGTCTATCCCAA-CCTTTTT-AAGGTTGCC
* * *
26350438 TTAGACAA-GTGGTGTCCCAACCTTTTTAAGGTTACC
1 TTAGACAAGGT-CTATCCCAACCTTTTTAAGGTTGCC
*
26350474 TTAGACAAGGTTTATCCCAACCTTTTTAAGGTTGCC
1 TTAGACAAGGTCTATCCCAACCTTTTTAAGGTTGCC
** *
26350510 TTAGA-TGGGTTTATCCCAACCTATTTTAAAGGTTG
1 TTAGACAAGGTCTATCCCAACCT-TTTT-AAGGTTG
26350545 GTCTTGATTA
Statistics
Matches: 241, Mismatches: 32, Indels: 33
0.79 0.10 0.11
Matches are distributed among these distances:
34 7 0.03
35 45 0.19
36 91 0.38
37 63 0.26
38 29 0.12
39 6 0.02
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.37
Consensus pattern (36 bp):
TTAGACAAGGTCTATCCCAACCTTTTTAAGGTTGCC
Found at i:26350568 original size:109 final size:105
Alignment explanation
Indices: 26350226--26350551 Score: 295
Period size: 109 Copynumber: 3.0 Consensus size: 105
26350216 ACTTTAGACA
* * *
26350226 AGGTCTATCTCAACTTTTTTAAGGTTGCTTTACAC-AGGTCTATCCTAACCTTTTTTAAAGGTTG
1 AGGTCTATC-CAACCTTTTTAAGGTTGCCTTAGACAAGGTCTATCCTAACC-TTTTT-AAGGTTG
* *
26350290 CCTTAGACATGGTGC-AACCCAACCT-TTTT-AAGGTTGTCTTAAAC
63 CCTTAG--ATGGT-CTATCCCAACCTATTTTAAAGGTTGTCTT-GAC
*
26350334 AGGTCTATCCAACCTTTTCTTATAGGTTGTCTTAGACAAGGTCTATCCTAACCTTTTTAAGGTTG
1 AGGTCTATCCAACC-TTT-TTA-AGGTTGCCTTAGACAAGGTCTATCCTAACCTTTTTAAGGTTG
* * * *
26350399 CCTTAGACAGCTCTATCCCAATC-ATTTTTAAAAGTT-TCCTTAGAC
63 CCTTAGA-TGGTCTATCCCAACCTA-TTTTAAAGGTTGT-CTT-GAC
* * * * * *
26350444 AAGTGGTGTCCCAACCTTTTTAAGGTTACCTTAGACAAGGTTTATCCCAACCTTTTTAAGGTTGC
1 AGGT-CTAT-CCAACCTTTTTAAGGTTGCCTTAGACAAGGTCTATCCTAACCTTTTTAAGGTTGC
*
26350509 CTTAGATGGGTTTATCCCAACCTATTTTAAAGGTTGGTCTTGA
64 CTTAGAT-GGTCTATCCCAACCTATTTTAAAGGTT-GTCTTGA
26350552 TTAGGTTTTT
Statistics
Matches: 180, Mismatches: 22, Indels: 31
0.77 0.09 0.13
Matches are distributed among these distances:
107 6 0.03
108 21 0.12
109 89 0.49
110 37 0.21
111 21 0.12
112 6 0.03
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (105 bp):
AGGTCTATCCAACCTTTTTAAGGTTGCCTTAGACAAGGTCTATCCTAACCTTTTTAAGGTTGCCT
TAGATGGTCTATCCCAACCTATTTTAAAGGTTGTCTTGAC
Found at i:26351256 original size:13 final size:13
Alignment explanation
Indices: 26351238--26351269 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
26351228 ATATATATAC
26351238 GCAGTTGAAAAAG
1 GCAGTTGAAAAAG
26351251 GCAGTTGAAAAAG
1 GCAGTTGAAAAAG
26351264 GCAGTT
1 GCAGTT
26351270 CCATTCAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.41, C:0.09, G:0.31, T:0.19
Consensus pattern (13 bp):
GCAGTTGAAAAAG
Found at i:26352060 original size:21 final size:21
Alignment explanation
Indices: 26352034--26352086 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 21
26352024 TCATTTTCAG
26352034 CAACTTTTTCTTCTTTAGCAA
1 CAACTTTTTCTTCTTTAGCAA
*
26352055 CAAC--TTTC-ACTTTAGCAA
1 CAACTTTTTCTTCTTTAGCAA
26352073 CAA-TTTCTTCTTCT
1 CAACTTT-TTCTTCT
26352087 ACAACATCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 8
0.72 0.06 0.22
Matches are distributed among these distances:
18 12 0.46
19 5 0.19
20 3 0.12
21 6 0.23
ACGTcount: A:0.25, C:0.26, G:0.04, T:0.45
Consensus pattern (21 bp):
CAACTTTTTCTTCTTTAGCAA
Found at i:26352092 original size:18 final size:19
Alignment explanation
Indices: 26352040--26352084 Score: 67
Period size: 18 Copynumber: 2.5 Consensus size: 19
26352030 TCAGCAACTT
26352040 TTTCTTCTTTAGCAACAAC
1 TTTCTTCTTTAGCAACAAC
*
26352059 TTTC-ACTTTAGCAACAA-
1 TTTCTTCTTTAGCAACAAC
26352076 TTTCTTCTT
1 TTTCTTCTT
26352085 CTACAACATC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 4 0.17
18 15 0.65
19 4 0.17
ACGTcount: A:0.24, C:0.24, G:0.04, T:0.47
Consensus pattern (19 bp):
TTTCTTCTTTAGCAACAAC
Found at i:26355348 original size:386 final size:386
Alignment explanation
Indices: 26354635--26355406 Score: 1544
Period size: 386 Copynumber: 2.0 Consensus size: 386
26354625 TTCTTAAAAA
26354635 ATCACAATTTTGACTCTTTTACAAATCAATCATTTTTTCTAAAATTAAAGGTATTTAAAACTCAG
1 ATCACAATTTTGACTCTTTTACAAATCAATCATTTTTTCTAAAATTAAAGGTATTTAAAACTCAG
26354700 TTTTAGAAATTAATTTAATTTTCTAAAAACAATAATTGAAAACATTACTGATATACCGTGTCATA
66 TTTTAGAAATTAATTTAATTTTCTAAAAACAATAATTGAAAACATTACTGATATACCGTGTCATA
26354765 GAATTCTGAACACTCAAAAGCTAAAATTCTTAGAATACCCCTAAAACTCTTAGGCCCTATTTTGG
131 GAATTCTGAACACTCAAAAGCTAAAATTCTTAGAATACCCCTAAAACTCTTAGGCCCTATTTTGG
26354830 GCTGTGACAAGGTACCTAATGAGAGTATGTGAAATCAAATTTTAATCTGAAGCTAGAAATTAGAA
196 GCTGTGACAAGGTACCTAATGAGAGTATGTGAAATCAAATTTTAATCTGAAGCTAGAAATTAGAA
26354895 GTTTTGCTTATCTTGAGTTTAGGGACTAAATTGAGTAAAATGTAAAATATGTGAGAAATAAAAAA
261 GTTTTGCTTATCTTGAGTTTAGGGACTAAATTGAGTAAAATGTAAAATATGTGAGAAATAAAAAA
26354960 AAGATTTATTTAGGATCATGCATCTCATGAAAAATTATGATAATGTTTGGTATTGATTTGG
326 AAGATTTATTTAGGATCATGCATCTCATGAAAAATTATGATAATGTTTGGTATTGATTTGG
26355021 ATCACAATTTTGACTCTTTTACAAATCAATCATTTTTTCTAAAATTAAAGGTATTTAAAACTCAG
1 ATCACAATTTTGACTCTTTTACAAATCAATCATTTTTTCTAAAATTAAAGGTATTTAAAACTCAG
26355086 TTTTAGAAATTAATTTAATTTTCTAAAAACAATAATTGAAAACATTACTGATATACCGTGTCATA
66 TTTTAGAAATTAATTTAATTTTCTAAAAACAATAATTGAAAACATTACTGATATACCGTGTCATA
26355151 GAATTCTGAACACTCAAAAGCTAAAATTCTTAGAATACCCCTAAAACTCTTAGGCCCTATTTTGG
131 GAATTCTGAACACTCAAAAGCTAAAATTCTTAGAATACCCCTAAAACTCTTAGGCCCTATTTTGG
26355216 GCTGTGACAAGGTACCTAATGAGAGTATGTGAAATCAAATTTTAATCTGAAGCTAGAAATTAGAA
196 GCTGTGACAAGGTACCTAATGAGAGTATGTGAAATCAAATTTTAATCTGAAGCTAGAAATTAGAA
26355281 GTTTTGCTTATCTTGAGTTTAGGGACTAAATTGAGTAAAATGTAAAATATGTGAGAAATAAAAAA
261 GTTTTGCTTATCTTGAGTTTAGGGACTAAATTGAGTAAAATGTAAAATATGTGAGAAATAAAAAA
26355346 AAGATTTATTTAGGATCATGCATCTCATGAAAAATTATGATAATGTTTGGTATTGATTTGG
326 AAGATTTATTTAGGATCATGCATCTCATGAAAAATTATGATAATGTTTGGTATTGATTTGG
26355407 TATATGAAAT
Statistics
Matches: 386, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
386 386 1.00
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.35
Consensus pattern (386 bp):
ATCACAATTTTGACTCTTTTACAAATCAATCATTTTTTCTAAAATTAAAGGTATTTAAAACTCAG
TTTTAGAAATTAATTTAATTTTCTAAAAACAATAATTGAAAACATTACTGATATACCGTGTCATA
GAATTCTGAACACTCAAAAGCTAAAATTCTTAGAATACCCCTAAAACTCTTAGGCCCTATTTTGG
GCTGTGACAAGGTACCTAATGAGAGTATGTGAAATCAAATTTTAATCTGAAGCTAGAAATTAGAA
GTTTTGCTTATCTTGAGTTTAGGGACTAAATTGAGTAAAATGTAAAATATGTGAGAAATAAAAAA
AAGATTTATTTAGGATCATGCATCTCATGAAAAATTATGATAATGTTTGGTATTGATTTGG
Found at i:26360741 original size:17 final size:19
Alignment explanation
Indices: 26360716--26360752 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
26360706 AAGCAAAAGA
26360716 ATTTCATA-TTA-TGAGAT
1 ATTTCATATTTAGTGAGAT
*
26360733 ATTTGATATTTAGTGAGAT
1 ATTTCATATTTAGTGAGAT
26360752 A
1 A
26360753 GGGTCAGAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 7 0.41
18 3 0.18
19 7 0.41
ACGTcount: A:0.35, C:0.03, G:0.16, T:0.46
Consensus pattern (19 bp):
ATTTCATATTTAGTGAGAT
Found at i:26362533 original size:25 final size:25
Alignment explanation
Indices: 26362487--26362534 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
26362477 CTTTCTTTGA
*
26362487 TAGTATATCTTGAAACTGCTATAGG
1 TAGTATATCTTGAAACTACTATAGG
*
26362512 TAGTATATAC-TGAGACTACTATA
1 TAGTATAT-CTTGAAACTACTATA
26362535 AATAGACTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 19 0.95
26 1 0.05
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.35
Consensus pattern (25 bp):
TAGTATATCTTGAAACTACTATAGG
Found at i:26369063 original size:18 final size:18
Alignment explanation
Indices: 26369042--26369077 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
26369032 GTTTTGAAAT
26369042 TGAATAATGATTTGTAAA
1 TGAATAATGATTTGTAAA
*
26369060 TGAATAATGTTTTGTAAA
1 TGAATAATGATTTGTAAA
26369078 CGAACGTCAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.17, T:0.42
Consensus pattern (18 bp):
TGAATAATGATTTGTAAA
Found at i:26376492 original size:28 final size:28
Alignment explanation
Indices: 26376451--26376547 Score: 151
Period size: 28 Copynumber: 3.5 Consensus size: 28
26376441 CTATGCAGTA
*
26376451 ACAGT-ACAGTGTGGGCCTTAGCCCGAT
1 ACAGTAACAGTGTGGGCCTTAGCCCAAT
*
26376478 ATAGTAACAGTGTGGGCCTTAGCCCAAT
1 ACAGTAACAGTGTGGGCCTTAGCCCAAT
*
26376506 ACAGTAACAGTGTGGGCCTTAGCTCAAT
1 ACAGTAACAGTGTGGGCCTTAGCCCAAT
*
26376534 ACAGTAACCGTGTG
1 ACAGTAACAGTGTG
26376548 ATAATGCAAC
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
27 4 0.06
28 60 0.94
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.24
Consensus pattern (28 bp):
ACAGTAACAGTGTGGGCCTTAGCCCAAT
Found at i:26376944 original size:27 final size:26
Alignment explanation
Indices: 26376886--26377016 Score: 113
Period size: 27 Copynumber: 4.9 Consensus size: 26
26376876 TATAACAATC
* *
26376886 ATTTTACCCTCTGGA-GGTATTTCGAT
1 ATTTTACCCT-TCGAGGGTATTTCGTT
26376912 AGTTTTACCCTTCGAGGGTATTTCAGTT
1 A-TTTTACCCTTCGAGGGTATTTC-GTT
* * *
26376940 ATTTTATCCTTTG-GGAGTATTTCGGTC
1 ATTTTACCCTTCGAGG-GTATTTC-GTT
* *
26376967 ATTTTACCCTTCAAGGTTATTTCGATT
1 ATTTTACCCTTCGAGGGTATTTCG-TT
* *
26376994 ATTTTACCTTTTGAGGGTATTTC
1 ATTTTACCCTTCGAGGGTATTTC
26377017 AGTCATTTAT
Statistics
Matches: 84, Mismatches: 15, Indels: 11
0.76 0.14 0.10
Matches are distributed among these distances:
26 7 0.08
27 72 0.86
28 5 0.06
ACGTcount: A:0.18, C:0.17, G:0.18, T:0.47
Consensus pattern (26 bp):
ATTTTACCCTTCGAGGGTATTTCGTT
Found at i:26377014 original size:54 final size:53
Alignment explanation
Indices: 26376886--26377024 Score: 149
Period size: 54 Copynumber: 2.6 Consensus size: 53
26376876 TATAACAATC
* * * *
26376886 ATTTTACCCTCTGGAGGTATTTCGAT-AGTTTTACCCTTCGAGGGTATTTCAGTT
1 ATTTTATCCTTTGG-GGTATTTCGGTCA-TTTTACCCTTCAAGGGTATTTCAGTT
*
26376940 ATTTTATCCTTTGGGAGTATTTCGGTCATTTTACCCTTCAAGGTTATTTC-GATT
1 ATTTTATCCTTTGGG-GTATTTCGGTCATTTTACCCTTCAAGGGTATTTCAG-TT
*
26376994 ATTTTA-CCTTTTGAGGGTATTTCAGTCATTT
1 ATTTTATCC-TTTG-GGGTATTTCGGTCATTT
26377025 ATTAACCGCT
Statistics
Matches: 74, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
53 4 0.05
54 67 0.91
55 3 0.04
ACGTcount: A:0.19, C:0.17, G:0.18, T:0.47
Consensus pattern (53 bp):
ATTTTATCCTTTGGGGTATTTCGGTCATTTTACCCTTCAAGGGTATTTCAGTT
Found at i:26380548 original size:75 final size:76
Alignment explanation
Indices: 26380465--26380620 Score: 287
Period size: 75 Copynumber: 2.1 Consensus size: 76
26380455 TCAAGATTTA
*
26380465 AGAAATCACGGCCCAATACGTTAGGGCACAATTCCTCCAAAATCCCAAACTCGGAATATTTCCTA
1 AGAAATCACGGCCCAATACGTTAGGGCACAATTCCTCCAAAATCCCAAACTCGAAATATTTCCTA
*
26380530 TATTATT-TTT
66 TATTATTATAT
26380540 AGAAATCACGGCCCAATACGTTAGGGCACAATTCCTCCAAAATCCCAAACTCGAAATATTTCCTA
1 AGAAATCACGGCCCAATACGTTAGGGCACAATTCCTCCAAAATCCCAAACTCGAAATATTTCCTA
26380605 TATTATTATAT
66 TATTATTATAT
26380616 AGAAA
1 AGAAA
26380621 AAATCCCCAT
Statistics
Matches: 78, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
75 71 0.91
76 7 0.09
ACGTcount: A:0.37, C:0.24, G:0.12, T:0.28
Consensus pattern (76 bp):
AGAAATCACGGCCCAATACGTTAGGGCACAATTCCTCCAAAATCCCAAACTCGAAATATTTCCTA
TATTATTATAT
Found at i:26381026 original size:16 final size:16
Alignment explanation
Indices: 26380988--26381053 Score: 55
Period size: 16 Copynumber: 4.2 Consensus size: 16
26380978 ATAAATGAGG
* **
26380988 AAAATAAAAAAATGAA
1 AAAATAAATAAACAAA
* *
26381004 AACATAAATCAACAAA
1 AAAATAAATAAACAAA
*
26381020 CAAATAAATAAACAAA
1 AAAATAAATAAACAAA
*
26381036 AAAAT--ATAAAGAAA
1 AAAATAAATAAACAAA
26381050 AAAA
1 AAAA
26381054 AAGGTGCATA
Statistics
Matches: 40, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
14 12 0.30
16 28 0.70
ACGTcount: A:0.77, C:0.08, G:0.03, T:0.12
Consensus pattern (16 bp):
AAAATAAATAAACAAA
Found at i:26381232 original size:16 final size:17
Alignment explanation
Indices: 26381190--26381236 Score: 51
Period size: 16 Copynumber: 2.7 Consensus size: 17
26381180 GATAGAAAGT
26381190 ATAACATATATATACGTAC
1 ATAA-ATATATA-ACGTAC
* *
26381209 ATATATATATAAGGTA-
1 ATAAATATATAACGTAC
26381225 ATAAATATATAA
1 ATAAATATATAA
26381237 ATCATAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
16 11 0.44
17 4 0.16
18 7 0.28
19 3 0.12
ACGTcount: A:0.53, C:0.06, G:0.06, T:0.34
Consensus pattern (17 bp):
ATAAATATATAACGTAC
Found at i:26382953 original size:44 final size:43
Alignment explanation
Indices: 26382807--26383528 Score: 202
Period size: 44 Copynumber: 16.7 Consensus size: 43
26382797 TTTTAAACCA
* * * * *
26382807 CTCCACTACAACTTCAGGAAGATAGGA-TTATCGACTTTAATCTG
1 CTCCACTACAACTTCAGGGAGATAAGACTT-GCCAC-TTAGTCTG
* *
26382851 CTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTG
1 CTCCACTACAACTTCAGGGAGATAAGACTTGCCA-CTT-AGTCTG
26382896 C-CTCACTACAACTTCA-GGAGGATAAGACTTGCCCACTTAGTCTG
1 CTC-CACTACAACTTCAGGGA-GATAAGACTTG-CCACTTAGTCTG
* * * **
26382940 CTCCACTGCAACTTTAGGGAGATAAGACTAG--A-TGCGATCTG
1 CTCCACTACAACTTCAGGGAGATAAGACTTGCCACTTAG-TCTG
* * * *** * *
26382981 CT-CTCTACAACTTCAGAGAGATAAGATCTAAG-GTTTTAATCCG
1 CTCCACTACAACTTCAGGGAGATAAGA-CT-TGCCACTTAGTCTG
*** ** * * * *
26383024 CT-CACTACAACTTCAACAAGATTGGATTATCGGC-TTTAATCTG
1 CTCCACTACAACTTCAGGGAGATAAGACT-T-GCCACTTAGTCTG
** *
26383067 CTCCACTGTAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGG
1 CTCCACTACAACTTCAGGGAGATAAGACTTGCCA-CTT-AGTCT-G
* * * ** *
26383113 CT-CACTGCAACTTCA-AGAGGATAAGACTAGATAC-GA-TCTG
1 CTCCACTACAACTTCAGGGA-GATAAGACTTGCCACTTAGTCTG
* * * * *** * **
26383153 CT-CTCTGCAACTTCAGAGAGATAAGATTTAAG-GTTTTAATCCA
1 CTCCACTACAACTTCAGGGAGATAAGACTT--GCCACTTAGTCTG
* * * * * *
26383196 CT-CACTGCAACTTCAGCGAGATAGGA-TTATCGACTTTAATCTG
1 CTCCACTACAACTTCAGGGAGATAAGACTT-GCCAC-TTAGTCTG
* * *
26383239 CTCCACTGCAACTTCAGGGAGATAAGACTTTCCATCTTCAGTCTA
1 CTCCACTACAACTTCAGGGAGATAAGACTTGCCA-CTT-AGTCTG
* ** *
26383284 C-CTCACTACAACTTCA-GGAGGATAAGACTAGATAC-GA-TCTG
1 CTC-CACTACAACTTCAGGGA-GATAAGACTTGCCACTTAGTCTG
** * * * ****** * *
26383325 CT-TTCTGCAACTTCAGAGAAATAAGATCTAAAGTTTTAATCCG
1 CTCCACTACAACTTCAGGGAGATAAGA-CTTGCCACTTAGTCTG
* * * * *
26383368 CT-CACTGCAACTTCAGCGAGATAGGA-TTACCGACTTTAATCTG
1 CTCCACTACAACTTCAGGGAGATAAGACTTGCC-AC-TTAGTCTG
* * *
26383411 CTCTACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTG
1 CTCCACTACAACTTCAGGGAGATAAGACTTGCCA-CTT-AGTCTG
* * *
26383456 C-CTCACTGCAACTTTA-GGAGGATAAGACTTGCCTACTTAGTTTG
1 CTC-CACTACAACTTCAGGGA-GATAAGACTTGCC-ACTTAGTCTG
26383500 CTCCACTACAACTTCAGGGAGATAAGACT
1 CTCCACTACAACTTCAGGGAGATAAGACT
26383529 CGATCTGTTT
Statistics
Matches: 517, Mismatches: 111, Indels: 100
0.71 0.15 0.14
Matches are distributed among these distances:
40 61 0.12
41 28 0.05
42 14 0.03
43 101 0.20
44 171 0.33
45 135 0.26
46 7 0.01
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (43 bp):
CTCCACTACAACTTCAGGGAGATAAGACTTGCCACTTAGTCTG
Found at i:26383036 original size:43 final size:43
Alignment explanation
Indices: 26382976--26383438 Score: 216
Period size: 43 Copynumber: 10.7 Consensus size: 43
26382966 ACTAGATGCG
* *
26382976 ATCTGCTCTCTACAACTTCAGAGAGATAAGATCTAAGGTTTTA
1 ATCTGCTCACTGCAACTTCAGAGAGATAAGATCTAAGGTTTTA
* * * ** * *
26383019 ATCCGCTCACTACAACTTCA-ACAAGATTGGAT-TATCGGCTTTA
1 ATCTGCTCACTGCAACTTCAGA-GAGATAAGATCTA-AGGTTTTA
* * * **** *
26383062 ATCTGCTCCACTGTAACTTCAGGGAGATAAGATTTGCCATCTTCA
1 ATCTGCT-CACTGCAACTTCAGAGAGATAAGATCTAAGGT-TTTA
* * ***
26383107 GTCTGGCTCACTGCAACTTCA-AGAGGATAAGA-CT-A-GATACG
1 ATCT-GCTCACTGCAACTTCAGAGA-GATAAGATCTAAGGTTTTA
* *
26383148 ATCTGCTCTCTGCAACTTCAGAGAGATAAGATTTAAGGTTTTA
1 ATCTGCTCACTGCAACTTCAGAGAGATAAGATCTAAGGTTTTA
** * * * **
26383191 ATCCACTCACTGCAACTTCAGCGAGATAGGAT-TATCGACTTTA
1 ATCTGCTCACTGCAACTTCAGAGAGATAAGATCTA-AGGTTTTA
* * * *
26383234 ATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTTCCA--TCTTCA
1 ATCTGCT-CACTGCAACTTCAGAGAGATAAGA-TCT-AAGGT-TTTA
* * * * ***
26383279 GTCTACCTCACTACAACTTCAG-GAGGATAAGA-CT-A-GATACG
1 ATCT-GCTCACTGCAACTTCAGAGA-GATAAGATCTAAGGTTTTA
** * *
26383320 ATCTGCTTTCTGCAACTTCAGAGAAATAAGATCTAAAGTTTTA
1 ATCTGCTCACTGCAACTTCAGAGAGATAAGATCTAAGGTTTTA
* * * * **
26383363 ATCCGCTCACTGCAACTTCAGCGAGATAGGAT-TACCGACTTTA
1 ATCTGCTCACTGCAACTTCAGAGAGATAAGATCTA-AGGTTTTA
*
26383406 ATCTGCTCTACTGCAACTTCAGGGAGATAAGAT
1 ATCTGCTC-ACTGCAACTTCAGAGAGATAAGAT
26383439 TTGCCATCTT
Statistics
Matches: 312, Mismatches: 81, Indels: 53
0.70 0.18 0.12
Matches are distributed among these distances:
40 41 0.13
41 19 0.06
42 9 0.03
43 116 0.37
44 68 0.22
45 53 0.17
46 6 0.02
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (43 bp):
ATCTGCTCACTGCAACTTCAGAGAGATAAGATCTAAGGTTTTA
Found at i:26383104 original size:216 final size:217
Alignment explanation
Indices: 26382729--26383140 Score: 664
Period size: 216 Copynumber: 1.9 Consensus size: 217
26382719 CTACTCCTGG
* *
26382729 TGCAACTTCAGGGAGATTAGACTAAATACGATCTGCTCTCTACAACTTCGGAGAGATAAGATCCA
1 TGCAACTTCAGGGAGATAAGACTAAATACGATCTGCTCTCTACAACTTCAGAGAGATAAGATCCA
* **
26382794 ATGTTTTAAACCACTCCACTACAACTTCAGGAAGATAGGATTATCGACTTTAATCTGCTCCACTG
66 AGGTTTTAAACCACTCCACTACAACTTCAACAAGATAGGATTATCGACTTTAATCTGCTCCACTG
*
26382859 CAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTACAACTTCAGGAGGATAAGAC
131 CAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTACAACTTCAAGAGGATAAGAC
26382924 TTGCCCACTTAGTCTGCTCCAC
196 TTGCCCACTTAGTCTGCTCCAC
* * * *
26382946 TGCAACTTTAGGGAGATAAGACTAGATGCGATCTGCTCTCTACAACTTCAGAGAGATAAGATCTA
1 TGCAACTTCAGGGAGATAAGACTAAATACGATCTGCTCTCTACAACTTCAGAGAGATAAGATCCA
* * * *
26383011 AGGTTTTAATCCGCT-CACTACAACTTCAACAAGATTGGATTATCGGCTTTAATCTGCTCCACTG
66 AGGTTTTAAACCACTCCACTACAACTTCAACAAGATAGGATTATCGACTTTAATCTGCTCCACTG
* * *
26383075 TAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGGCTCACTGCAACTTCAAGAGGATAAGAC
131 CAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTACAACTTCAAGAGGATAAGAC
26383140 T
196 T
26383141 AGATACGATC
Statistics
Matches: 178, Mismatches: 17, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
216 107 0.60
217 71 0.40
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (217 bp):
TGCAACTTCAGGGAGATAAGACTAAATACGATCTGCTCTCTACAACTTCAGAGAGATAAGATCCA
AGGTTTTAAACCACTCCACTACAACTTCAACAAGATAGGATTATCGACTTTAATCTGCTCCACTG
CAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTACAACTTCAAGAGGATAAGAC
TTGCCCACTTAGTCTGCTCCAC
Found at i:26383125 original size:172 final size:172
Alignment explanation
Indices: 26382842--26383484 Score: 888
Period size: 172 Copynumber: 3.7 Consensus size: 172
26382832 GATTATCGAC
* * * * * * *
26382842 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-TGCCATCTTCAGTCTGC-CTCACTAC
1 TTTAATCCGCT-CACTGCAACTTCAGCGAGATAGGATTAT-CGA-CTTTAATCTGCTC-CACTGC
* *
26382905 AACTTCA-GGAGGATAAGACTTGCCCA-CTT-AGTCTG-CTCCACTGCAACTTTAGG-GAGATAA
62 AACTTCAGGGA-GATAAGATTTG-CCATCTTCAGTCTGCCT-CACTGCAACTTCAGGAG-GATAA
* *
26382965 GACTAGATGCGATCTGCTCTCTACAACTTCAGAGAGATAAGATCTAAGGT
123 GACTAGATACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGT
* * * * * *
26383015 TTTAATCCGCTCACTACAACTTCAACAAGATTGGATTATCGGCTTTAATCTGCTCCACTGTAACT
1 TTTAATCCGCTCACTGCAACTTCAGCGAGATAGGATTATCGACTTTAATCTGCTCCACTGCAACT
* *
26383080 TCAGGGAGATAAGATTTGCCATCTTCAGTCTGGCTCACTGCAACTTCAAGAGGATAAGACTAGAT
66 TCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTAGAT
*
26383145 ACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATTTAAGGT
131 ACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGT
*
26383187 TTTAATCCACTCACTGCAACTTCAGCGAGATAGGATTATCGACTTTAATCTGCTCCACTGCAACT
1 TTTAATCCGCTCACTGCAACTTCAGCGAGATAGGATTATCGACTTTAATCTGCTCCACTGCAACT
* *
26383252 TCAGGGAGATAAGACTTT-CCATCTTCAGTCTACCTCACTACAACTTCAGGAGGATAAGACTAGA
66 TCAGGGAGATAAGA-TTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTAGA
* * *
26383316 TACGATCTGCTTTCTGCAACTTCAGAGAAATAAGATCTAAAGT
130 TACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGT
* *
26383359 TTTAATCCGCTCACTGCAACTTCAGCGAGATAGGATTACCGACTTTAATCTGCTCTACTGCAACT
1 TTTAATCCGCTCACTGCAACTTCAGCGAGATAGGATTATCGACTTTAATCTGCTCCACTGCAACT
*
26383424 TCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTTAGGAGGATAAGACT
66 TCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACT
26383485 TGCCTACTTA
Statistics
Matches: 421, Mismatches: 40, Indels: 19
0.88 0.08 0.04
Matches are distributed among these distances:
170 3 0.01
171 36 0.09
172 365 0.87
173 17 0.04
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (172 bp):
TTTAATCCGCTCACTGCAACTTCAGCGAGATAGGATTATCGACTTTAATCTGCTCCACTGCAACT
TCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTAGAT
ACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGT
Found at i:26383253 original size:216 final size:217
Alignment explanation
Indices: 26382729--26383254 Score: 562
Period size: 216 Copynumber: 2.4 Consensus size: 217
26382719 CTACTCCTGG
* * * * * ** * * *
26382729 TGCAACTTCAGGGAGATTAGACTAAATACGATCTGCTCTCTACAACTTCGGAGAGATAAGATCCA
1 TGCAACTTCAGAGAGATAAGACTAGATGCAATCCACTCACTACAACTTCAGAGAGATAAGATCTA
* * * **
26382794 ATG-TTTTAAACCACTCCACTACAACTTCAGGAAGATAGGATTATCGACTTTAATCTGCTCCACT
66 A-GACTTTAATCCGCTCCACTACAACTTCAACAAGATAGGATTATCGACTTTAATCTGCTCCACT
*
26382858 GCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTACAACTTCAGGAGGATAAGA
130 GCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTACAACTTCAAGAGGATAAGA
* * *
26382923 CTTGCCCACTTAGTCTGCTCCAC
195 CTAGCACACTGAGTCTGCTCCAC
* * * ** *
26382946 TGCAACTTTAGGGAGATAAGACTAGATGCGATCTGCTCTCTACAACTTCAGAGAGATAAGATCTA
1 TGCAACTTCAGAGAGATAAGACTAGATGCAATCCACTCACTACAACTTCAGAGAGATAAGATCTA
** * *
26383011 AGGTTTTAATCCGCT-CACTACAACTTCAACAAGATTGGATTATCGGCTTTAATCTGCTCCACTG
66 AGACTTTAATCCGCTCCACTACAACTTCAACAAGATAGGATTATCGACTTTAATCTGCTCCACTG
* * *
26383075 TAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGGCTCACTGCAACTTCAAGAGGATAAGAC
131 CAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTACAACTTCAAGAGGATAAGAC
* *
26383140 TAG-ATAC-GA-TCTGCT-CTC
196 TAGCACACTGAGTCTGCTCCAC
* * ** * * *
26383158 TGCAACTTCAGAGAGATAAGATTTAAGGTTTTAATCCACTCACTGCAACTTCAGCGAGATAGGAT
1 TGCAACTTCAGAGAGATAAGA-CT-A-GATGCAATCCACTCACTACAACTTCAGAGAGATAAGAT
* * *
26383223 -TATCGACTTTAATCTGCTCCACTGCAACTTCA
63 CTA-AGACTTTAATCCGCTCCACTACAACTTCA
26383255 GGGAGATAAG
Statistics
Matches: 264, Mismatches: 39, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
212 21 0.08
213 7 0.03
214 4 0.02
215 41 0.16
216 121 0.46
217 70 0.27
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (217 bp):
TGCAACTTCAGAGAGATAAGACTAGATGCAATCCACTCACTACAACTTCAGAGAGATAAGATCTA
AGACTTTAATCCGCTCCACTACAACTTCAACAAGATAGGATTATCGACTTTAATCTGCTCCACTG
CAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTACAACTTCAAGAGGATAAGAC
TAGCACACTGAGTCTGCTCCAC
Found at i:26383519 original size:89 final size:86
Alignment explanation
Indices: 26383062--26383526 Score: 355
Period size: 89 Copynumber: 5.4 Consensus size: 86
26383052 ATCGGCTTTA
* *
26383062 ATCTGCTCCACTGTAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGGCTCACTGCAACTTC
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTT-CCATCTTCAGTCTGCCTCACTGCAACTTC
* * * *
26383127 AAGAGGATAAGACTAGATAC-G
65 AGGAGGATAAGACTTGCTACTT
* * * * *
26383148 ATCTGCT-CTCTGCAACTTCAGAGAGATAAGATTT-AAGGT-TTTAATC--CACTCACTGCAACT
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTCCA--TCTTCAGTCTGC-CTCACTGCAACT
* * *
26383208 TCAGCGA-GATAGGA-TTATCGACTTT
63 TCAG-GAGGATAAGACTT-GCTAC-TT
* *
26383233 AATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTTCCATCTTCAGTCTACCTCACTACAACTT
1 -ATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTTCCATCTTCAGTCTGCCTCACTGCAACTT
* * *
26383298 CAGGAGGATAAGACTAGATAC-G
64 CAGGAGGATAAGACTTGCTACTT
** * * * ** * * *
26383320 ATCTGCT-TTCTGCAACTTCAGAGAAATAAGATCTAAAGT-TTTAATCCG-CTCACTGCAACTTC
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTCCA-TCTTCAGTCTGCCTCACTGCAACTTC
* * *
26383382 AGCGA-GATAGGA-TTACCGACTTT
65 AG-GAGGATAAGACTT-GCTAC-TT
*
26383405 AATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTT
1 -ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTT-CCATCTTCAGTCTGCCTCACTGCAACTT
*
26383470 TAGGAGGATAAGACTTGCCTACTT
64 CAGGAGGATAAGACTTG-CTACTT
* *
26383494 AGTTTGCTCCACTACAACTTCAGGGAGATAAGA
1 A-TCTGCTCCACTGCAACTTCAGGGAGATAAGA
26383527 CTCGATCTGT
Statistics
Matches: 289, Mismatches: 60, Indels: 57
0.71 0.15 0.14
Matches are distributed among these distances:
82 2 0.01
83 47 0.16
84 17 0.06
85 46 0.16
86 28 0.10
87 47 0.16
88 20 0.07
89 75 0.26
90 7 0.02
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.29
Consensus pattern (86 bp):
ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTCCATCTTCAGTCTGCCTCACTGCAACTTCA
GGAGGATAAGACTTGCTACTT
Found at i:26391764 original size:19 final size:20
Alignment explanation
Indices: 26391727--26391764 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
26391717 TATAATAAAA
*
26391727 CTTTACTATAAATTAAATTC
1 CTTTACTATAAAGTAAATTC
*
26391747 CTTTA-TATAAAGTGAATT
1 CTTTACTATAAAGTAAATT
26391765 ACAAATAAGA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 11 0.69
20 5 0.31
ACGTcount: A:0.39, C:0.11, G:0.05, T:0.45
Consensus pattern (20 bp):
CTTTACTATAAAGTAAATTC
Found at i:26395361 original size:16 final size:17
Alignment explanation
Indices: 26395319--26395365 Score: 51
Period size: 16 Copynumber: 2.7 Consensus size: 17
26395309 CATGCAAAGT
26395319 ATAACATATATATACGTAC
1 ATAA-ATATATA-ACGTAC
* *
26395338 ATATATATATAAGGTA-
1 ATAAATATATAACGTAC
26395354 ATAAATATATAA
1 ATAAATATATAA
26395366 ATCATAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
16 11 0.44
17 4 0.16
18 7 0.28
19 3 0.12
ACGTcount: A:0.53, C:0.06, G:0.06, T:0.34
Consensus pattern (17 bp):
ATAAATATATAACGTAC
Found at i:26395907 original size:72 final size:69
Alignment explanation
Indices: 26395830--26395963 Score: 178
Period size: 70 Copynumber: 1.9 Consensus size: 69
26395820 CCCTAACCTA
*** *
26395830 AAAAAAAATCATTTCAAAACTAATTTTTTTAAAAAACTTAAAAAAAAACTCTCCTTCCCCCAGTT
1 AAAAAAAATCATTTCAAAACTAA-TTTAAAAAAAAACTT-AAAAAAAACTCTCCCTCCCCCAGTT
26395895 CGTTCG
64 CGTTCG
* * *
26395901 NAAAAAAAATTATTTGAAAACTTATTTAAAAAAAAACTTAAAAAAAACTCTCCCTCCCCCAGT
1 -AAAAAAAATCATTTCAAAACTAATTTAAAAAAAAACTTAAAAAAAACTCTCCCTCCCCCAGT
26395964 CCGTCCGGCC
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
70 23 0.42
71 12 0.22
72 20 0.36
ACGTcount: A:0.47, C:0.20, G:0.04, T:0.28
Consensus pattern (69 bp):
AAAAAAAATCATTTCAAAACTAATTTAAAAAAAAACTTAAAAAAAACTCTCCCTCCCCCAGTTCG
TTCG
Found at i:26402741 original size:18 final size:18
Alignment explanation
Indices: 26402718--26402754 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
26402708 TCGGGGTTCT
26402718 CAATAGA-GGAAAGCAAGA
1 CAATAGATGGAAAG-AAGA
26402736 CAATAGATGGAAAGAAGA
1 CAATAGATGGAAAGAAGA
26402754 C
1 C
26402755 CATTGGATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.54, C:0.11, G:0.27, T:0.08
Consensus pattern (18 bp):
CAATAGATGGAAAGAAGA
Found at i:26406752 original size:76 final size:75
Alignment explanation
Indices: 26406618--26407036 Score: 401
Period size: 76 Copynumber: 5.5 Consensus size: 75
26406608 AAGTTTTACA
* * * * *
26406618 CCCAGCGCTAGTTGGATAAACCGACGATATTAAATGTGTGCCCATCACTAGACAGATTAATCGAC
1 CCCAACGCTAGTTGGATAAACCGACGATATTAAATGTGTGCCCA-AACTAGTCGGATTAACCGAC
26406683 AAAGATTTGTG
65 AAAGATTTGTG
* * *
26406694 CCCAACGCTAGTTGGATAAACTGATGATATTAAGTGTGTGCCCAGAACTAGTCGGATTAA-CGAC
1 CCCAACGCTAGTTGGATAAACCGACGATATTAAATGTGTGCCCA-AACTAGTCGGATTAACCGAC
**
26406758 AAAGATTTACG
65 AAAGATTTGTG
* * * * *
26406769 -CCAAGTGCTAGTTGGATAAACCGACAATATTAAATGTTTGCCCAGCACTAGTCCGATTAACCGA
1 CCCAA-CGCTAGTTGGATAAACCGACGATATTAAATGTGTGCCCA-AACTAGTCGGATTAACCGA
26406833 CAAAGATTTGTG
64 CAAAGATTTGTG
** * * * * * *
26406845 CCCAGTGCTAGTCGGATAAACCGACGATACTAAATATGTGTCCAACACTCGTCGGATTAACCGAA
1 CCCAACGCTAGTTGGATAAACCGACGATATTAAATGTGTGCCCAA-ACTAGTCGGATTAACCGAC
* **
26406910 AAATATTTGCA
65 AAAGATTTGTG
* ** * ** * *
26406921 CCCAGCATTGGTCAGATAAACCAACGATATTAAATGTGTTCCCAACACTAGTCGGATTAACCGAC
1 CCCAACGCTAGTTGGATAAACCGACGATATTAAATGTGTGCCCAA-ACTAGTCGGATTAACCGAC
*
26406986 AAAGATTTATG
65 AAAGATTTGTG
*** * * *
26406997 CCCAACGCTAGTCAAATAAACTGACAATATTAAATATGTG
1 CCCAACGCTAGTTGGATAAACCGACGATATTAAATGTGTG
26407037 TTATGTCCTA
Statistics
Matches: 279, Mismatches: 60, Indels: 8
0.80 0.17 0.02
Matches are distributed among these distances:
74 4 0.01
75 60 0.22
76 212 0.76
77 3 0.01
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (75 bp):
CCCAACGCTAGTTGGATAAACCGACGATATTAAATGTGTGCCCAAACTAGTCGGATTAACCGACA
AAGATTTGTG
Found at i:26406856 original size:36 final size:36
Alignment explanation
Indices: 26406730--26406869 Score: 113
Period size: 36 Copynumber: 3.8 Consensus size: 36
26406720 ATATTAAGTG
* *
26406730 TGTGCCCAGAACTAGTCGGATTAA-CGACAAAGATT
1 TGTGCCCAGTACTAGTCGGATAAACCGACAAAGATT
** * * * *
26406765 TACGCCAAGTGCTAGTTGGATAAACCGAC-AATATT
1 TGTGCCCAGTACTAGTCGGATAAACCGACAAAGATT
* * *
26406800 AAATGTTTGCCCAGCACTAGTCCGATTAACCGACAAAGATT
1 ---TG--TGCCCAGTACTAGTCGGATAAACCGACAAAGATT
*
26406841 TGTGCCCAGTGCTAGTCGGATAAACCGAC
1 TGTGCCCAGTACTAGTCGGATAAACCGAC
26406870 GATACTAAAT
Statistics
Matches: 77, Mismatches: 21, Indels: 13
0.69 0.19 0.12
Matches are distributed among these distances:
35 22 0.29
36 27 0.35
38 3 0.04
40 20 0.26
41 5 0.06
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (36 bp):
TGTGCCCAGTACTAGTCGGATAAACCGACAAAGATT
Found at i:26406899 original size:151 final size:152
Alignment explanation
Indices: 26406612--26407037 Score: 498
Period size: 151 Copynumber: 2.8 Consensus size: 152
26406602 GTAACCAAGT
* * * *
26406612 TTTACACCCAGCGCTAGTTGGATAAACCGACGATATTAAATGTGTGCCCATCACTAGACAGATTA
1 TTTACACCAAGCGCTAGTTGGATAAACCGACGATATTAAATGTTTGCCCAACACTAGTCAGATTA
* * * * * *
26406677 ATCGACAAAGATTTGTGCCCAACGCTAGTTGGATAAACTGATGATATTAAGTGTGTGCCCAGAAC
66 ACCGACAAAGATTTGTGCCCAACGCTAGTCGGATAAACTGACGATATTAAATATGTGTCCAGAAC
*
26406742 TAGTCGGATTAA-CGACAAAGA
131 TAGTCGGATTAACCGAAAAAGA
* * * * *
26406763 TTTACGCCAAGTGCTAGTTGGATAAACCGACAATATTAAATGTTTGCCCAGCACTAGTCCGATTA
1 TTTACACCAAGCGCTAGTTGGATAAACCGACGATATTAAATGTTTGCCCAACACTAGTCAGATTA
** * *
26406828 ACCGACAAAGATTTGTGCCCAGTGCTAGTCGGATAAACCGACGATACTAAATATGTGTCCA-ACA
66 ACCGACAAAGATTTGTGCCCAACGCTAGTCGGATAAACTGACGATATTAAATATGTGTCCAGA-A
* *
26406892 CTCGTCGGATTAACCGAAAAATA
130 CTAGTCGGATTAACCGAAAAAGA
* * ** * ** * *
26406915 TTTGCACCCAGCATTGGTCAGATAAACCAACGATATTAAATGTGTT-CCCAACACTAGTCGGATT
1 TTTACACCAAGCGCTAGTTGGATAAACCGACGATATTAAATGT-TTGCCCAACACTAGTCAGATT
* ** *
26406979 AACCGACAAAGATTTATGCCCAACGCTAGTCAAATAAACTGACAATATTAAATATGTGT
65 AACCGACAAAGATTTGTGCCCAACGCTAGTCGGATAAACTGACGATATTAAATATGTGT
26407038 TATGTCCTAC
Statistics
Matches: 230, Mismatches: 42, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
150 1 0.00
151 121 0.53
152 106 0.46
153 2 0.01
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.26
Consensus pattern (152 bp):
TTTACACCAAGCGCTAGTTGGATAAACCGACGATATTAAATGTTTGCCCAACACTAGTCAGATTA
ACCGACAAAGATTTGTGCCCAACGCTAGTCGGATAAACTGACGATATTAAATATGTGTCCAGAAC
TAGTCGGATTAACCGAAAAAGA
Found at i:26410306 original size:28 final size:28
Alignment explanation
Indices: 26410274--26410335 Score: 106
Period size: 28 Copynumber: 2.2 Consensus size: 28
26410264 ATAAGAAGGA
* *
26410274 GACGATGGCTTCTGGTGGGGGAGGTGAT
1 GACGATGGCTTCTGGTGAGGGAAGTGAT
26410302 GACGATGGCTTCTGGTGAGGGAAGTGAT
1 GACGATGGCTTCTGGTGAGGGAAGTGAT
26410330 GACGAT
1 GACGAT
26410336 CTTGAGTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.19, C:0.11, G:0.45, T:0.24
Consensus pattern (28 bp):
GACGATGGCTTCTGGTGAGGGAAGTGAT
Found at i:26421400 original size:19 final size:18
Alignment explanation
Indices: 26421376--26421418 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
26421366 TGGGCCTCAT
26421376 TGGGCCAAAATGGGCTGTG
1 TGGGCCAAAATGGGCT-TG
* *
26421395 TGGGCC-CAGTGGGCTTG
1 TGGGCCAAAATGGGCTTG
26421412 TGGGCCA
1 TGGGCCA
26421419 CACAGATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 8 0.38
18 7 0.33
19 6 0.29
ACGTcount: A:0.14, C:0.21, G:0.44, T:0.21
Consensus pattern (18 bp):
TGGGCCAAAATGGGCTTG
Found at i:26421799 original size:27 final size:27
Alignment explanation
Indices: 26421768--26422100 Score: 216
Period size: 27 Copynumber: 12.4 Consensus size: 27
26421758 CCCAATATTT
26421768 GTAAAATGACCATAATACCCCTATAGG
1 GTAAAATGACCATAATACCCCTATAGG
* * *
26421795 GT-AAATGACCAAAAAACTCGC-ATAGG
1 GTAAAATGACCATAATAC-CCCTATAGG
* * * * *
26421821 GTAAAATGACCGTAATGCCCATGTAAG
1 GTAAAATGACCATAATACCCCTATAGG
*
26421848 GTAAAAATGA-CAGTAATGCCCCTATAGG
1 GT-AAAATGACCA-TAATACCCCTATAGG
* * *
26421876 GTAAAATGACCA-AAAAGCCCCCATAAG
1 GTAAAATGACCATAATA-CCCCTATAGG
* *
26421903 GTAAAATGACCGTAATA-CCCTCGTAGG
1 GTAAAATGACCATAATACCCCT-ATAGG
* * * *
26421930 GTAAAATGACCGTAATGCCCCTGTAAG
1 GTAAAATGACCATAATACCCCTATAGG
* * *
26421957 GTAAAATAACCGTAATACCCCTGTAGG
1 GTAAAATGACCATAATACCCCTATAGG
*
26421984 GTAAAATGACCGA-AA-AACCCTCATAGG
1 GTAAAATGACC-ATAATACCCCT-ATAGG
* * * * *
26422011 GTAAAATGATCGTAATGCCCTTGTAGG
1 GTAAAATGACCATAATACCCCTATAGG
** * * **
26422038 GTAAAATGATTA-AAGTACCACTGTAAA
1 GTAAAATGACCATAA-TACCCCTATAGG
* *
26422065 GTAAAATGACCATAATGCCCCTAGAGG
1 GTAAAATGACCATAATACCCCTATAGG
26422092 GT-AAATGAC
1 GTAAAATGAC
26422101 TATTTTGCCC
Statistics
Matches: 236, Mismatches: 54, Indels: 33
0.73 0.17 0.10
Matches are distributed among these distances:
26 40 0.17
27 161 0.68
28 35 0.15
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.21
Consensus pattern (27 bp):
GTAAAATGACCATAATACCCCTATAGG
Found at i:26421933 original size:54 final size:54
Alignment explanation
Indices: 26421817--26422046 Score: 239
Period size: 54 Copynumber: 4.2 Consensus size: 54
26421807 AAAACTCGCA
** * *** * * *
26421817 TAGGGTAAAATGACCGTAATGCCCATGTAAGGTAAAAATGACAGTAATGCCCCTA
1 TAGGGTAAAATGACCAAAAAGCCCCCATAAGGT-AAAATGACCGTAATACCCCTG
26421872 TAGGGTAAAATGACCAAAAAGCCCCCATAAGGTAAAATGACCGTAATA-CCCTCG
1 TAGGGTAAAATGACCAAAAAGCCCCCATAAGGTAAAATGACCGTAATACCCCT-G
** * ** *
26421926 TAGGGTAAAATGACCGTAATGCCCCTGTAAGGTAAAATAACCGTAATACCCCTG
1 TAGGGTAAAATGACCAAAAAGCCCCCATAAGGTAAAATGACCGTAATACCCCTG
* * * * *
26421980 TAGGGTAAAATGACCGAAAAA-CCCTCATAGGGTAAAATGATCGTAATGCCCTTG
1 TAGGGTAAAATGACC-AAAAAGCCCCCATAAGGTAAAATGACCGTAATACCCCTG
26422034 TAGGGTAAAATGA
1 TAGGGTAAAATGA
26422047 TTAAAGTACC
Statistics
Matches: 146, Mismatches: 26, Indels: 7
0.82 0.15 0.04
Matches are distributed among these distances:
53 4 0.03
54 109 0.75
55 33 0.23
ACGTcount: A:0.38, C:0.20, G:0.21, T:0.21
Consensus pattern (54 bp):
TAGGGTAAAATGACCAAAAAGCCCCCATAAGGTAAAATGACCGTAATACCCCTG
Found at i:26421936 original size:81 final size:81
Alignment explanation
Indices: 26421768--26422046 Score: 300
Period size: 81 Copynumber: 3.5 Consensus size: 81
26421758 CCCAATATTT
* * *
26421768 GTAAAATGACCA-TAATACCCCTATAGGGT-AAATGACCAAAAAACTCGCATAGGGTAAAATGAC
1 GTAAAATGACCAGTAATGCCCCTATAGGGTAAAATGACC-AAAAACCCCCATAGGGTAAAATGAC
* *
26421831 CGTAATGCCCAT-GTAAG
65 CGTAATACCC-TCGTAGG
*
26421848 GTAAAAATGA-CAGTAATGCCCCTATAGGGTAAAATGACCAAAAAGCCCCCATAAGGTAAAATGA
1 GT-AAAATGACCAGTAATGCCCCTATAGGGTAAAATGACCAAAAA-CCCCCATAGGGTAAAATGA
26421912 CCGTAATACCCTCGTAGG
64 CCGTAATACCCTCGTAGG
* * * * * **
26421930 GTAAAATGACC-GTAATGCCCCTGTAAGGTAAAATAACCGTAATACCCCTGTAGGGTAAAATGAC
1 GTAAAATGACCAGTAATGCCCCTATAGGGTAAAATGACC-AAAAACCCCCATAGGGTAAAATGAC
* * *
26421994 CGAAAAACCCTCATAGG
65 CGTAATACCCTCGTAGG
* * *
26422011 GTAAAATGATC-GTAATGCCCTTGTAGGGTAAAATGA
1 GTAAAATGACCAGTAATGCCCCTATAGGGTAAAATGA
26422047 TTAAAGTACC
Statistics
Matches: 171, Mismatches: 21, Indels: 13
0.83 0.10 0.06
Matches are distributed among these distances:
80 4 0.02
81 123 0.72
82 44 0.26
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.20
Consensus pattern (81 bp):
GTAAAATGACCAGTAATGCCCCTATAGGGTAAAATGACCAAAAACCCCCATAGGGTAAAATGACC
GTAATACCCTCGTAGG
Found at i:26422156 original size:24 final size:23
Alignment explanation
Indices: 26422129--26422214 Score: 84
Period size: 24 Copynumber: 3.6 Consensus size: 23
26422119 TAAATAATTT
*
26422129 ATTTTTCCGTGATGTAAATGACTG
1 ATTTTTCTGTGAT-TAAATGACTG
26422153 ATTTCTT-TGTGATTTAAATGACTG
1 ATTT-TTCTGTGA-TTAAATGACTG
* *
26422177 ATTTGTCTGTGATTAGTATGACTG
1 ATTTTTCTGTGATTA-AATGACTG
* *
26422201 ATTTGTCTATGATT
1 ATTTTTCTGTGATT
26422215 TGTATGACTG
Statistics
Matches: 54, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
23 4 0.07
24 47 0.87
25 3 0.06
ACGTcount: A:0.23, C:0.09, G:0.20, T:0.48
Consensus pattern (23 bp):
ATTTTTCTGTGATTAAATGACTG
Found at i:26422219 original size:24 final size:24
Alignment explanation
Indices: 26422146--26422227 Score: 110
Period size: 24 Copynumber: 3.4 Consensus size: 24
26422136 CGTGATGTAA
* * **
26422146 ATGACTGATTTCTTTGTGATTTAA
1 ATGACTGATTTGTCTGTGATTTGT
*
26422170 ATGACTGATTTGTCTGTGATTAGT
1 ATGACTGATTTGTCTGTGATTTGT
*
26422194 ATGACTGATTTGTCTATGATTTGT
1 ATGACTGATTTGTCTGTGATTTGT
26422218 ATGACTGATT
1 ATGACTGATT
26422228 CTGAGTATGG
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 51 1.00
ACGTcount: A:0.23, C:0.09, G:0.21, T:0.48
Consensus pattern (24 bp):
ATGACTGATTTGTCTGTGATTTGT
Found at i:26422409 original size:32 final size:32
Alignment explanation
Indices: 26422368--26422460 Score: 132
Period size: 32 Copynumber: 2.9 Consensus size: 32
26422358 GTTACAATGC
26422368 TACTGATGGCTTTGTGCCGATCATATTACCAT
1 TACTGATGGCTTTGTGCCGATCATATTACCAT
* * *
26422400 TACTGATGGCTGTGTGCCGATCATATCACTAT
1 TACTGATGGCTTTGTGCCGATCATATTACCAT
** *
26422432 TGTTGATGGCTTTGTGCCAATCATATTAC
1 TACTGATGGCTTTGTGCCGATCATATTAC
26422461 TGTACTTATG
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 53 1.00
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.38
Consensus pattern (32 bp):
TACTGATGGCTTTGTGCCGATCATATTACCAT
Found at i:26422491 original size:22 final size:21
Alignment explanation
Indices: 26422466--26422539 Score: 58
Period size: 22 Copynumber: 3.3 Consensus size: 21
26422456 ATTACTGTAC
26422466 TTATGGCTTGTAGTCATTCTGT
1 TTATGGCTT-TAGTCATTCTGT
* * *
26422488 TTATAGCTTATAGTTATCCTGT
1 TTATGGCTT-TAGTCATTCTGT
* * *
26422510 TTACGGCTCTTAGCCATTCTGG
1 TTATGGCT-TTAGTCATTCTGT
26422532 TTACTGGC
1 TTA-TGGC
26422540 AGCTTTGCTG
Statistics
Matches: 39, Mismatches: 11, Indels: 3
0.74 0.21 0.06
Matches are distributed among these distances:
22 35 0.90
23 4 0.10
ACGTcount: A:0.16, C:0.19, G:0.20, T:0.45
Consensus pattern (21 bp):
TTATGGCTTTAGTCATTCTGT
Found at i:26425910 original size:19 final size:17
Alignment explanation
Indices: 26425888--26425930 Score: 59
Period size: 19 Copynumber: 2.4 Consensus size: 17
26425878 AATTTATTTT
26425888 AAAAATAAAAAAATTTTAA
1 AAAAATAAAAAAA--TTAA
*
26425907 AAAAATTAAAAAATTAA
1 AAAAATAAAAAAATTAA
26425924 AAAAATA
1 AAAAATA
26425931 TATATTTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 10 0.45
19 12 0.55
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (17 bp):
AAAAATAAAAAAATTAA
Found at i:26425917 original size:17 final size:17
Alignment explanation
Indices: 26425883--26425930 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 17
26425873 CTAAAAATTT
26425883 ATTTTAAAAATAA-AAAA
1 ATTTTAAAAA-AATAAAA
26425900 ATTTTAAAAAAATTAAAA
1 ATTTTAAAAAAA-TAAAA
*
26425918 A-ATTAAAAAAATA
1 ATTTTAAAAAAATA
26425931 TATATTTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
16 4 0.14
17 19 0.68
18 5 0.18
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
ATTTTAAAAAAATAAAA
Found at i:26426276 original size:28 final size:30
Alignment explanation
Indices: 26426219--26426285 Score: 79
Period size: 29 Copynumber: 2.3 Consensus size: 30
26426209 TTTTTTATTG
26426219 AAATAATAT-GAAAAACAATTAATTACCT-
1 AAATAATATAGAAAAACAATTAATTACCTA
* *
26426247 AAATAATATAGAATGAA-AATTATTTA-CTA
1 AAATAATATAGAA-AAACAATTAATTACCTA
26426276 AAATAATATA
1 AAATAATATA
26426286 TTTACATAGA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
28 11 0.32
29 21 0.62
30 2 0.06
ACGTcount: A:0.58, C:0.06, G:0.04, T:0.31
Consensus pattern (30 bp):
AAATAATATAGAAAAACAATTAATTACCTA
Found at i:26426488 original size:21 final size:22
Alignment explanation
Indices: 26426459--26426506 Score: 71
Period size: 21 Copynumber: 2.2 Consensus size: 22
26426449 TCAAGCCTAG
*
26426459 AAAGTATTTGAAGAACTAAGGC
1 AAAGTATTTGAAGAACAAAGGC
26426481 AAAG-ATTTGAAGAACAAAGGC
1 AAAGTATTTGAAGAACAAAGGC
*
26426502 TAAGT
1 AAAGT
26426507 TTTTATAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 19 0.83
22 4 0.17
ACGTcount: A:0.48, C:0.08, G:0.23, T:0.21
Consensus pattern (22 bp):
AAAGTATTTGAAGAACAAAGGC
Found at i:26430626 original size:20 final size:21
Alignment explanation
Indices: 26430596--26430645 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
26430586 AAAATTAAAA
* *
26430596 AAAAAATATGTATATAGATAT
1 AAAATATATGTATACAGATAT
*
26430617 -AAATATATGTATACAGTTAT
1 AAAATATATGTATACAGATAT
26430637 AAAATATAT
1 AAAATATAT
26430646 AAAATATAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 17 0.68
21 8 0.32
ACGTcount: A:0.54, C:0.02, G:0.08, T:0.36
Consensus pattern (21 bp):
AAAATATATGTATACAGATAT
Found at i:26431052 original size:3 final size:3
Alignment explanation
Indices: 26431046--26431095 Score: 82
Period size: 3 Copynumber: 16.7 Consensus size: 3
26431036 AAATATGATG
* *
26431046 ATA ATA ACA ACA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
26431094 AT
1 AT
26431096 CATCAATAAC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.66, C:0.04, G:0.00, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:26440871 original size:21 final size:21
Alignment explanation
Indices: 26440845--26440886 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
26440835 ATCCAACATG
26440845 GCTAGTTAATTGGCCACGTCA
1 GCTAGTTAATTGGCCACGTCA
26440866 GCTAGTTAATTGGCCACGTCA
1 GCTAGTTAATTGGCCACGTCA
26440887 CCTGTCCCGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.29
Consensus pattern (21 bp):
GCTAGTTAATTGGCCACGTCA
Found at i:26442051 original size:30 final size:31
Alignment explanation
Indices: 26442012--26442071 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
26442002 GGAGGTGGGA
*
26442012 TGGGAAGGGAATAAAAGTTTTAGGGGAAAAG
1 TGGGAAGGGAATAAAAATTTTAGGGGAAAAG
* *
26442043 TGGG-AGGGAGTAAAAATTTTGGGGGAAAA
1 TGGGAAGGGAATAAAAATTTTAGGGGAAAA
26442072 TAAAATGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.40, C:0.00, G:0.40, T:0.20
Consensus pattern (31 bp):
TGGGAAGGGAATAAAAATTTTAGGGGAAAAG
Found at i:26442299 original size:9 final size:9
Alignment explanation
Indices: 26442285--26442321 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
26442275 TATAGTTTGA
26442285 TATTCGAAT
1 TATTCGAAT
26442294 TATTCGAAT
1 TATTCGAAT
*
26442303 TATTCGAGT
1 TATTCGAAT
26442312 TATTCGAAT
1 TATTCGAAT
26442321 T
1 T
26442322 CAAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:26442662 original size:3 final size:3
Alignment explanation
Indices: 26442654--26442682 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
26442644 TCACAAAAAT
26442654 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
26442683 TATTTTTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:26444603 original size:19 final size:20
Alignment explanation
Indices: 26444569--26444609 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
26444559 GATTAAAATT
*
26444569 AAAAAATAAATATTTTTTTA
1 AAAAAATAAATATTTTATTA
*
26444589 AAAAAATTAAT-TTTTATTA
1 AAAAAATAAATATTTTATTA
26444608 AA
1 AA
26444610 TGGAAGCTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (20 bp):
AAAAAATAAATATTTTATTA
Found at i:26463190 original size:6 final size:6
Alignment explanation
Indices: 26463179--26463207 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
26463169 GACAAAATAA
26463179 ATATTT ATATTT ATATTT ATATTT ATATT
1 ATATTT ATATTT ATATTT ATATTT ATATT
26463208 AGATTATCAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (6 bp):
ATATTT
Found at i:26471713 original size:50 final size:50
Alignment explanation
Indices: 26471638--26471768 Score: 190
Period size: 50 Copynumber: 2.6 Consensus size: 50
26471628 GAGTAAACTT
* * *
26471638 AGTTCGGCAGCCTTTCAGATCTATTTTGACTGATGTGTTCAAATCTGTTC
1 AGTTCAGCAGCCTTTCAGATCTATTTTGACTGATGTGCTCAAATCTGCTC
** *
26471688 AGTTCAGCAGCCTTTTGGATCTATTTTGACTGATGTGCTCAACTCTGCTC
1 AGTTCAGCAGCCTTTCAGATCTATTTTGACTGATGTGCTCAAATCTGCTC
* *
26471738 AGTTCAGCAGTCTTTCAGATCTATTCTGACT
1 AGTTCAGCAGCCTTTCAGATCTATTTTGACT
26471769 AGAGCGCTCC
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 71 1.00
ACGTcount: A:0.20, C:0.22, G:0.19, T:0.39
Consensus pattern (50 bp):
AGTTCAGCAGCCTTTCAGATCTATTTTGACTGATGTGCTCAAATCTGCTC
Found at i:26471973 original size:21 final size:23
Alignment explanation
Indices: 26471926--26471974 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 23
26471916 GAGAAAACTA
*
26471926 AAGTGAGTGAGAGAGGAATGTTG
1 AAGTGAGTGAGAGAGGAATGTAG
*
26471949 -AGTGA-TGAGAGATGAATG-AG
1 AAGTGAGTGAGAGAGGAATGTAG
26471969 AAGTGA
1 AAGTGA
26471975 AAGATGGTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 1 0.04
21 17 0.74
22 5 0.22
ACGTcount: A:0.39, C:0.00, G:0.41, T:0.20
Consensus pattern (23 bp):
AAGTGAGTGAGAGAGGAATGTAG
Found at i:26472527 original size:21 final size:20
Alignment explanation
Indices: 26472472--26472527 Score: 53
Period size: 21 Copynumber: 2.8 Consensus size: 20
26472462 ATATATACAT
*
26472472 TAATA-AATTAA-CATGAAT
1 TAATATAATTAAGCATGAAA
* *
26472490 TAATATAAAATATGCATGAAAA
1 TAATAT-AATTAAGCATG-AAA
26472512 TAATATAATTAAGCAT
1 TAATATAATTAAGCAT
26472528 AATTTCACAT
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
18 5 0.17
20 4 0.14
21 12 0.41
22 8 0.28
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.32
Consensus pattern (20 bp):
TAATATAATTAAGCATGAAA
Found at i:26475147 original size:22 final size:22
Alignment explanation
Indices: 26475117--26475158 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
26475107 ACACCAAAAC
* *
26475117 AGGCTTTTAGCGGCGCTTTTTT
1 AGGCCTTTAGCGACGCTTTTTT
26475139 AGGCCTTTAGCGACGCTTTT
1 AGGCCTTTAGCGACGCTTTT
26475159 CAAAGCGCCG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.12, C:0.21, G:0.26, T:0.40
Consensus pattern (22 bp):
AGGCCTTTAGCGACGCTTTTTT
Found at i:26475461 original size:86 final size:87
Alignment explanation
Indices: 26475371--26475572 Score: 280
Period size: 86 Copynumber: 2.3 Consensus size: 87
26475361 TAGATCAGGG
*** * * * *
26475371 TCTTTAGCGGCGTTTTTTTCTCAAATGCCACAATAGACCCTGATCTATAGCGGCGCTTTGACCAC
1 TCTTTAGCGGCGTTTTCCCCTAAAACGCCACAATAGACCCTGATCTATAACGGCGCTTCGACCAC
*
26475436 -AAACACCACTAAAGAACTTAA
66 AAAACACCACTAAAGAACCTAA
* *
26475457 TCTTTAGCAGCGTTTTCCCCTAAAACGCCGCAATAGACCCTGATCTATAACGGCGCTTCGACCAC
1 TCTTTAGCGGCGTTTTCCCCTAAAACGCCACAATAGACCCTGATCTATAACGGCGCTTCGACCAC
*
26475522 AAAACGCCACTAAAGAACCTAA
66 AAAACACCACTAAAGAACCTAA
* *
26475544 TCTTTAGCGGCGCTTTCCCCAAAAACGCC
1 TCTTTAGCGGCGTTTTCCCCTAAAACGCC
26475573 GCTAAAGACC
Statistics
Matches: 101, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
86 56 0.55
87 45 0.45
ACGTcount: A:0.30, C:0.31, G:0.15, T:0.24
Consensus pattern (87 bp):
TCTTTAGCGGCGTTTTCCCCTAAAACGCCACAATAGACCCTGATCTATAACGGCGCTTCGACCAC
AAAACACCACTAAAGAACCTAA
Found at i:26475578 original size:43 final size:43
Alignment explanation
Indices: 26475413--26475665 Score: 226
Period size: 43 Copynumber: 5.9 Consensus size: 43
26475403 ATAGACCCTG
* * * * *
26475413 ATCTATAGCGGCGCTTTGACCACAAACACCACTAAAGAACTTA
1 ATCTTTAGCGGCGCTTTCACCAAAAACGCCACTAAAGAACCTA
* * * * * * *
26475456 ATCTTTAGCAGCGTTTTCCCCTAAAACGCCGC-AATAGACCCTG
1 ATCTTTAGCGGCGCTTTCACCAAAAACGCCACTAA-AGAACCTA
* *
26475499 ATCTATAACGGCGC-TTCGACCACAAAACGCCACTAAAGAACCTA
1 ATCTTTAGCGGCGCTTTC-ACCA-AAAACGCCACTAAAGAACCTA
* *
26475543 ATCTTTAGCGGCGCTTTCCCCAAAAACGCCGCTAAAG-ACCATA
1 ATCTTTAGCGGCGCTTTCACCAAAAACGCCACTAAAGAACC-TA
* ** * * *
26475586 ATCTTTAGTGGCGCTTTTTCCACAAACGCCGCTAAA-AACCCTT
1 ATCTTTAGCGGCGCTTTCACCAAAAACGCCACTAAAGAA-CCTA
*
26475629 ATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAG
1 ATCTTTAGCGGCGCTTTCACCAAAAACGCCACTAAAG
26475666 GCCAACACCT
Statistics
Matches: 166, Mismatches: 35, Indels: 17
0.76 0.16 0.08
Matches are distributed among these distances:
42 8 0.05
43 121 0.73
44 32 0.19
45 5 0.03
ACGTcount: A:0.32, C:0.30, G:0.15, T:0.23
Consensus pattern (43 bp):
ATCTTTAGCGGCGCTTTCACCAAAAACGCCACTAAAGAACCTA
Found at i:26475588 original size:130 final size:129
Alignment explanation
Indices: 26475413--26475665 Score: 305
Period size: 130 Copynumber: 2.0 Consensus size: 129
26475403 ATAGACCCTG
* * *
26475413 ATCTATAGCGGCGCTTTGACCACAAACACCACTAAAGAACTTAATCTTTAGCAGCG-TTTTCCC-
1 ATCTATAGCGGCGCTTTCACCAAAAACACCACTAAAGAACATAATCTTTAGCAGCGCTTTTCCCA
*
26475476 CTAAAACGCCGC-AATAGACCCTGATCTATAACGGCGCTTCGACCACAAAACGCCACTAAAGAAC
66 C--AAACGCCGCTAA-AAACCCTGATCTATAACGGCGCTTCGACCA-AAAACGCCACTAAAGAAC
26475540 CTA
127 CTA
* * * * * ** *
26475543 ATCTTTAGCGGCGCTTTCCCCAAAAACGCCGCTAAAGACCATAATCTTTAGTGGCGCTTTTTCCA
1 ATCTATAGCGGCGCTTTCACCAAAAACACCACTAAAGAACATAATCTTTAGCAGCGCTTTTCCCA
* * * *
26475608 CAAACGCCGCTAAAAACCCTTATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAG
66 CAAACGCCGCTAAAAACCCTGATCTATAACGGCGCTTCGACCAAAAACGCCACTAAAG
26475666 GCCAACACCT
Statistics
Matches: 104, Mismatches: 16, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
129 15 0.14
130 80 0.77
131 8 0.08
132 1 0.01
ACGTcount: A:0.32, C:0.30, G:0.15, T:0.23
Consensus pattern (129 bp):
ATCTATAGCGGCGCTTTCACCAAAAACACCACTAAAGAACATAATCTTTAGCAGCGCTTTTCCCA
CAAACGCCGCTAAAAACCCTGATCTATAACGGCGCTTCGACCAAAAACGCCACTAAAGAACCTA
Found at i:26475652 original size:86 final size:87
Alignment explanation
Indices: 26475518--26475709 Score: 237
Period size: 86 Copynumber: 2.2 Consensus size: 87
26475508 GGCGCTTCGA
* *
26475518 CCACAAAACGCCACTAAAGAACCTAATCTTTAGCGGCGCTTTCCCCAAAAACGCCGCTAAAGACC
1 CCACAAAACGCCACTAAAGAACCTAATCTTTAGCGGCGCTTTCACCAAAAACGCCACTAAAGACC
*
26475583 ATA-ATCTTTAGTGGCGCTTTTT
66 A-ACACCTTTAGTGGCGCTTTTT
* * * *
26475605 CCAC-AAACGCCGCTAAA-AACCCTTATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAGGC
1 CCACAAAACGCCACTAAAGAA-CCTAATCTTTAGCGGCGCTTTCACCAAAAACGCCACTAAAGAC
*
26475668 CAACACCTTTAGTGGCGTTTTTT
65 CAACACCTTTAGTGGCGCTTTTT
** *
26475691 AAAAAAAAACGCCACTAAA
1 -CCACAAAACGCCACTAAA
26475710 TTTGGCAGAT
Statistics
Matches: 89, Mismatches: 12, Indels: 7
0.82 0.11 0.06
Matches are distributed among these distances:
85 3 0.03
86 69 0.78
87 5 0.06
88 12 0.13
ACGTcount: A:0.34, C:0.29, G:0.15, T:0.22
Consensus pattern (87 bp):
CCACAAAACGCCACTAAAGAACCTAATCTTTAGCGGCGCTTTCACCAAAAACGCCACTAAAGACC
AACACCTTTAGTGGCGCTTTTT
Found at i:26476037 original size:21 final size:21
Alignment explanation
Indices: 26476011--26476144 Score: 128
Period size: 21 Copynumber: 6.4 Consensus size: 21
26476001 TTTGACGCTG
*
26476011 CTCTGCTTCCCTCGCTGCAGC
1 CTCTGCTTCTCTCGCTGCAGC
**
26476032 CTCTGCTT-TCCTCGCTTTAGC
1 CTCTGCTTCT-CTCGCTGCAGC
26476053 CTCTGCTTCTCTCGCTGCAGC
1 CTCTGCTTCTCTCGCTGCAGC
* * * * *
26476074 TTGTACTTCTCTAGCTGCCGC
1 CTCTGCTTCTCTCGCTGCAGC
*
26476095 CTCTGCTTCTCTTGCTGCCA-C
1 CTCTGCTTCTCTCGCTG-CAGC
* *
26476116 CTCTGCTTCTCTTGCTGCCGC
1 CTCTGCTTCTCTCGCTGCAGC
*
26476137 ATCTGCTT
1 CTCTGCTT
26476145 TAAGCTGCTG
Statistics
Matches: 92, Mismatches: 17, Indels: 8
0.79 0.15 0.07
Matches are distributed among these distances:
20 1 0.01
21 89 0.97
22 2 0.02
ACGTcount: A:0.05, C:0.40, G:0.17, T:0.37
Consensus pattern (21 bp):
CTCTGCTTCTCTCGCTGCAGC
Found at i:26476190 original size:66 final size:66
Alignment explanation
Indices: 26476114--26476261 Score: 201
Period size: 66 Copynumber: 2.2 Consensus size: 66
26476104 TCTTGCTGCC
* *
26476114 ACCTCTGCTTCTCTTGCTGCCGCATCTGCTTTAAGCTGCT-GCTGGAGTTCTTCATA-CTTTCAT
1 ACCTCAGCTTCTCTCGCTGCCGCATCTGCTTTAAGCTG-TAGCTGGAGTTCTTCATATCTTT-AT
26476177 TGA
64 TGA
* * * *
26476180 ACCTCAGCTTCTCTCGCTGCTGCATCTGCTTTCAGTTGTAGCTGGAGTTCTTCATATCTTTTTTG
1 ACCTCAGCTTCTCTCGCTGCCGCATCTGCTTTAAGCTGTAGCTGGAGTTCTTCATATCTTTATTG
26476245 A
66 A
*
26476246 ACATCAGCTTCTCTCG
1 ACCTCAGCTTCTCTCG
26476262 ATGTTGCCTC
Statistics
Matches: 73, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
65 1 0.01
66 68 0.93
67 4 0.05
ACGTcount: A:0.14, C:0.28, G:0.18, T:0.40
Consensus pattern (66 bp):
ACCTCAGCTTCTCTCGCTGCCGCATCTGCTTTAAGCTGTAGCTGGAGTTCTTCATATCTTTATTG
A
Found at i:26476277 original size:66 final size:66
Alignment explanation
Indices: 26476120--26476284 Score: 190
Period size: 66 Copynumber: 2.5 Consensus size: 66
26476110 TGCCACCTCT
* * * * * *
26476120 GCTTCTCTTGCTGCCGCATCTGCTTTAAGCTGCT-GCTGGAGTTCTTCATACTTTCATTGAACCT
1 GCTTCTCTCGATGCTGCATCCGCTTTAAGTTG-TAGCTGGAGTTCTTCATACTTTCATTGAACAT
26476184 CA
65 CA
* * * *
26476186 GCTTCTCTCGCTGCTGCATCTGCTTTCAGTTGTAGCTGGAGTTCTTCATATCTTT-TTTGAACAT
1 GCTTCTCTCGATGCTGCATCCGCTTTAAGTTGTAGCTGGAGTTCTTCATA-CTTTCATTGAACAT
26476250 CA
65 CA
* *
26476252 GCTTCTCTCGATGTTGCCTCCGCTTTAAGTTGT
1 GCTTCTCTCGATGCTGCATCCGCTTTAAGTTGT
26476285 GTAATTTGCT
Statistics
Matches: 86, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
65 1 0.01
66 81 0.94
67 4 0.05
ACGTcount: A:0.14, C:0.27, G:0.19, T:0.41
Consensus pattern (66 bp):
GCTTCTCTCGATGCTGCATCCGCTTTAAGTTGTAGCTGGAGTTCTTCATACTTTCATTGAACATC
A
Found at i:26481723 original size:9 final size:9
Alignment explanation
Indices: 26481706--26481907 Score: 96
Period size: 9 Copynumber: 24.2 Consensus size: 9
26481696 TAAGTATAAT
*
26481706 TAAGCTATG
1 TAAGTTATG
26481715 TAAGTTATG
1 TAAGTTATG
26481724 T-A-TTATG
1 TAAGTTATG
26481731 TAAGTTAT-
1 TAAGTTATG
*
26481739 TTA-TTATG
1 TAAGTTATG
* **
26481747 AAAACTATG
1 TAAGTTATG
*
26481756 TAAGTTGTG
1 TAAGTTATG
26481765 T-A-TTATG
1 TAAGTTATG
*
26481772 -AA--AAT-
1 TAAGTTATG
* *
26481777 TATGCTATG
1 TAAGTTATG
*
26481786 TAAGTTATA
1 TAAGTTATG
* *
26481795 TAAGTCATA
1 TAAGTTATG
26481804 TAAGTTATG
1 TAAGTTATG
26481813 T-A-TTATG
1 TAAGTTATG
26481820 TAAGTTATG
1 TAAGTTATG
26481829 TAAGTTAT-
1 TAAGTTATG
*
26481837 TTA-TTATG
1 TAAGTTATG
* * *
26481845 CAAATTAAG
1 TAAGTTATG
26481854 TAAGTTATG
1 TAAGTTATG
26481863 TAAGTTATG
1 TAAGTTATG
*
26481872 TATA-ATAT-
1 TA-AGTTATG
**
26481880 TAA-TTAAC
1 TAAGTTATG
26481888 TAAGTTATG
1 TAAGTTATG
*
26481897 TAATTTATG
1 TAAGTTATG
26481906 TA
1 TA
26481908 TAATATTTAT
Statistics
Matches: 145, Mismatches: 32, Indels: 32
0.69 0.15 0.15
Matches are distributed among these distances:
6 3 0.02
7 28 0.19
8 18 0.12
9 95 0.66
10 1 0.01
ACGTcount: A:0.37, C:0.03, G:0.15, T:0.45
Consensus pattern (9 bp):
TAAGTTATG
Found at i:26481732 original size:16 final size:16
Alignment explanation
Indices: 26481711--26481830 Score: 78
Period size: 16 Copynumber: 7.9 Consensus size: 16
26481701 ATAATTAAGC
26481711 TATGTAAGTTATGTAT
1 TATGTAAGTTATGTAT
*
26481727 TATGTAAGTTATTTAT
1 TATGTAAGTTATGTAT
*
26481743 TATG-AA---A---AC
1 TATGTAAGTTATGTAT
*
26481752 TATGTAAGTTGTGTAT
1 TATGTAAGTTATGTAT
* * *
26481768 TATGAAAATTATG--C
1 TATGTAAGTTATGTAT
*
26481782 TATGTAAGTTATATAAGT
1 TATGTAAGTTATGT-A-T
* *
26481800 CATATAAGTTATGTAT
1 TATGTAAGTTATGTAT
26481816 TATGTAAGTTATGTA
1 TATGTAAGTTATGTA
26481831 AGTTATTTAT
Statistics
Matches: 76, Mismatches: 17, Indels: 22
0.66 0.15 0.19
Matches are distributed among these distances:
9 5 0.07
10 2 0.03
12 1 0.01
14 10 0.13
15 2 0.03
16 44 0.58
17 1 0.01
18 11 0.14
ACGTcount: A:0.36, C:0.03, G:0.17, T:0.45
Consensus pattern (16 bp):
TATGTAAGTTATGTAT
Found at i:26481755 original size:25 final size:25
Alignment explanation
Indices: 26481725--26481861 Score: 118
Period size: 25 Copynumber: 5.6 Consensus size: 25
26481715 TAAGTTATGT
26481725 ATTATGTAAGTTATTTATTATGAAA
1 ATTATGTAAGTTATTTATTATGAAA
* * *
26481750 ACTATGTAAGTTGTGTATTATGAAA
1 ATTATGTAAGTTATTTATTATGAAA
* * *
26481775 ATTATGCTATGTAAGTTA-TAT--AA
1 ATTATG-TAAGTTATTTATTATGAAA
* * * * *
26481798 GTCATATAAGTTATGTATTATGTAA
1 ATTATGTAAGTTATTTATTATGAAA
* *
26481823 GTTATGTAAGTTATTTATTATGCAA
1 ATTATGTAAGTTATTTATTATGAAA
*
26481848 ATTAAGTAAGTTAT
1 ATTATGTAAGTTAT
26481862 GTAAGTTATG
Statistics
Matches: 86, Mismatches: 22, Indels: 8
0.74 0.19 0.07
Matches are distributed among these distances:
22 7 0.08
23 8 0.09
25 65 0.76
26 6 0.07
ACGTcount: A:0.37, C:0.03, G:0.15, T:0.45
Consensus pattern (25 bp):
ATTATGTAAGTTATTTATTATGAAA
Found at i:26481917 original size:13 final size:13
Alignment explanation
Indices: 26481899--26481927 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
26481889 AAGTTATGTA
26481899 ATTTATGTATAAT
1 ATTTATGTATAAT
26481912 ATTTATGTATAAT
1 ATTTATGTATAAT
26481925 ATT
1 ATT
26481928 AATATAAGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (13 bp):
ATTTATGTATAAT
Found at i:26481957 original size:56 final size:56
Alignment explanation
Indices: 26481912--26482094 Score: 357
Period size: 56 Copynumber: 3.3 Consensus size: 56
26481902 TATGTATAAT
*
26481912 ATTTATGTATAATATTAATATAAGTTATGTATAATATTAATTAATTAAGTTATGTA
1 ATTTATGTATAATATTAATGTAAGTTATGTATAATATTAATTAATTAAGTTATGTA
26481968 ATTTATGTATAATATTAATGTAAGTTATGTATAATATTAATTAATTAAGTTATGTA
1 ATTTATGTATAATATTAATGTAAGTTATGTATAATATTAATTAATTAAGTTATGTA
26482024 ATTTATGTATAATATTAATGTAAGTTATGTATAATATTAATTAATTAAGTTATGTA
1 ATTTATGTATAATATTAATGTAAGTTATGTATAATATTAATTAATTAAGTTATGTA
26482080 ATTTATGTATAATAT
1 ATTTATGTATAATAT
26482095 CACATCATCC
Statistics
Matches: 126, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 126 1.00
ACGTcount: A:0.42, C:0.00, G:0.10, T:0.49
Consensus pattern (56 bp):
ATTTATGTATAATATTAATGTAAGTTATGTATAATATTAATTAATTAAGTTATGTA
Found at i:26481975 original size:9 final size:9
Alignment explanation
Indices: 26481961--26482088 Score: 52
Period size: 9 Copynumber: 13.8 Consensus size: 9
26481951 ATTAATTAAG
26481961 TTATGTAAT
1 TTATGTAAT
26481970 TTATGTATAAT
1 TTATG--TAAT
*
26481981 ATTAATGTAAG
1 -TT-ATGTAAT
26481992 TTATGT-AT
1 TTATGTAAT
*
26482000 AATAT-TAAT
1 -TTATGTAAT
* *
26482009 TAAT-TAAG
1 TTATGTAAT
26482017 TTATGTAAT
1 TTATGTAAT
26482026 TTATGTATAAT
1 TTATG--TAAT
*
26482037 ATTAATGTAAG
1 -TT-ATGTAAT
26482048 TTATGT-AT
1 TTATGTAAT
*
26482056 AATAT-TAAT
1 -TTATGTAAT
* *
26482065 TAAT-TAAG
1 TTATGTAAT
26482073 TTATGTAAT
1 TTATGTAAT
26482082 TTATGTA
1 TTATGTA
26482089 TAATATCACA
Statistics
Matches: 89, Mismatches: 16, Indels: 28
0.67 0.12 0.21
Matches are distributed among these distances:
8 20 0.22
9 41 0.46
10 4 0.04
11 14 0.16
12 4 0.04
13 6 0.07
ACGTcount: A:0.40, C:0.00, G:0.11, T:0.49
Consensus pattern (9 bp):
TTATGTAAT
Found at i:26481982 original size:34 final size:34
Alignment explanation
Indices: 26481820--26482094 Score: 184
Period size: 34 Copynumber: 7.8 Consensus size: 34
26481810 ATGTATTATG
* * * *** *
26481820 TAAGTTATGTAAGTTATTTATTATGCAAATTAAG
1 TAAGTTATGTAATTTATGTATAATATTAATTAAT
* *
26481854 TAAGTTATGTAAGTTATGTATAATATTAATTAAC
1 TAAGTTATGTAATTTATGTATAATATTAATTAAT
*
26481888 TAAGTTATGTAATTTATGTATAATATTTATGT-A-
1 TAAGTTATGTAATTTATGTATAATATTAAT-TAAT
* * *
26481921 TAATATTAATATAAGTTATGTATAATATTAATTAAT
1 TAA-GTT-ATGTAATTTATGTATAATATTAATTAAT
26481957 TAAGTTATGTAATTTATGTATAATATTAATGTAAGT
1 TAAGTTATGTAATTTATGTATAATATTAAT-TAA-T
* * * * *
26481993 TATGTATAATATTAATTAAT-TA-AGTTATGTAATTTAT
1 TAAGT-T-AT-GTAATTTATGTATA-ATAT-TAATTAAT
*
26482030 GTATA-ATAT-TAATGTAAGTTATGTATAATATTAATTAAT
1 -TA-AGTTATGTAA--T---TTATGTATAATATTAATTAAT
26482069 TAAGTTATGTAATTTATGTATAATAT
1 TAAGTTATGTAATTTATGTATAATAT
26482095 CACATCATCC
Statistics
Matches: 192, Mismatches: 26, Indels: 46
0.73 0.10 0.17
Matches are distributed among these distances:
33 3 0.02
34 98 0.51
35 28 0.15
36 11 0.06
37 6 0.03
38 16 0.08
39 24 0.12
40 5 0.03
41 1 0.01
ACGTcount: A:0.41, C:0.01, G:0.11, T:0.48
Consensus pattern (34 bp):
TAAGTTATGTAATTTATGTATAATATTAATTAAT
Found at i:26481988 original size:22 final size:22
Alignment explanation
Indices: 26481963--26482013 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
26481953 TAATTAAGTT
26481963 ATGTAATTTATGTATAATATTA
1 ATGTAATTTATGTATAATATTA
*
26481985 ATGTAAGTTATGTATAATATTA
1 ATGTAATTTATGTATAATATTA
26482007 AT-TAATT
1 ATGTAATT
26482014 AAGTTATGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
21 4 0.15
22 23 0.85
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (22 bp):
ATGTAATTTATGTATAATATTA
Found at i:26482044 original size:22 final size:22
Alignment explanation
Indices: 26482019--26482069 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
26482009 TAATTAAGTT
26482019 ATGTAATTTATGTATAATATTA
1 ATGTAATTTATGTATAATATTA
*
26482041 ATGTAAGTTATGTATAATATTA
1 ATGTAATTTATGTATAATATTA
26482063 AT-TAATT
1 ATGTAATT
26482070 AAGTTATGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
21 4 0.15
22 23 0.85
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (22 bp):
ATGTAATTTATGTATAATATTA
Found at i:26482177 original size:13 final size:13
Alignment explanation
Indices: 26482159--26482195 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
26482149 ATATAAGTTT
26482159 ATGTAAGTTATGA
1 ATGTAAGTTATGA
*
26482172 ATGTAAGTTATGT
1 ATGTAAGTTATGA
26482185 ATGTAAGTTAT
1 ATGTAAGTTAT
26482196 TTAAATTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.22, T:0.43
Consensus pattern (13 bp):
ATGTAAGTTATGA
Found at i:26484536 original size:8 final size:10
Alignment explanation
Indices: 26484513--26484549 Score: 65
Period size: 10 Copynumber: 3.7 Consensus size: 10
26484503 TAATAACTAT
26484513 ATATATATCC
1 ATATATATCC
*
26484523 ATATATATTC
1 ATATATATCC
26484533 ATATATATCC
1 ATATATATCC
26484543 ATATATA
1 ATATATA
26484550 AGTAAAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (10 bp):
ATATATATCC
Found at i:26485770 original size:15 final size:15
Alignment explanation
Indices: 26485746--26485775 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26485736 AATATAAACT
26485746 ATATACTAAATTTCA
1 ATATACTAAATTTCA
*
26485761 ATATATTAAATTTCA
1 ATATACTAAATTTCA
26485776 TCTAACAGGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.47, C:0.10, G:0.00, T:0.43
Consensus pattern (15 bp):
ATATACTAAATTTCA
Found at i:26486302 original size:14 final size:14
Alignment explanation
Indices: 26486283--26486350 Score: 52
Period size: 15 Copynumber: 4.9 Consensus size: 14
26486273 ATGACCGTTG
26486283 AAACCCTAAATCTC
1 AAACCCTAAATCTC
*
26486297 AAACCCCTAAACCTCC
1 AAA-CCCTAAATCT-C
*
26486313 AACCCCTAAAT-T-
1 AAACCCTAAATCTC
* *
26486325 -AACCTTAAATCCC
1 AAACCCTAAATCTC
*
26486338 AAACCTTAAATCT
1 AAACCCTAAATCT
26486351 ATACCCAGTC
Statistics
Matches: 42, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
11 8 0.19
14 15 0.36
15 16 0.38
16 3 0.07
ACGTcount: A:0.41, C:0.37, G:0.00, T:0.22
Consensus pattern (14 bp):
AAACCCTAAATCTC
Found at i:26486306 original size:15 final size:15
Alignment explanation
Indices: 26486286--26486323 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
26486276 ACCGTTGAAA
26486286 CCCTAAATCTCAAAC
1 CCCTAAATCTCAAAC
* *
26486301 CCCTAAACCTCCAAC
1 CCCTAAATCTCAAAC
26486316 CCCTAAAT
1 CCCTAAAT
26486324 TAACCTTAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.37, C:0.45, G:0.00, T:0.18
Consensus pattern (15 bp):
CCCTAAATCTCAAAC
Found at i:26489113 original size:16 final size:17
Alignment explanation
Indices: 26489092--26489125 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
26489082 TAATTAAAAA
26489092 TTTTAAAAAAAT-CAAT
1 TTTTAAAAAAATACAAT
*
26489108 TTTTAAAATAATACAAT
1 TTTTAAAAAAATACAAT
26489125 T
1 T
26489126 GTGTTACTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (17 bp):
TTTTAAAAAAATACAAT
Found at i:26489627 original size:3 final size:3
Alignment explanation
Indices: 26489621--26489672 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
26489611 CTACTACTAC
26489621 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
26489669 TAT T
1 TAT T
26489673 GACCCACATA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:26509026 original size:23 final size:23
Alignment explanation
Indices: 26508961--26509073 Score: 97
Period size: 23 Copynumber: 5.0 Consensus size: 23
26508951 ATACCAGATA
26508961 CGCCACAAAGGTTA-ACAGAATG
1 CGCCACAAAGGTTATACAGAATG
* * * * * *
26508983 -TCAAGAAA-GCTACACAAAATG
1 CGCCACAAAGGTTATACAGAATG
* *
26509004 TGCCACAAAGGCTATACAGAATG
1 CGCCACAAAGGTTATACAGAATG
* *
26509027 CGCCATAAAGGTTATACAGAGTG
1 CGCCACAAAGGTTATACAGAATG
* *
26509050 CACCACAAAAGTTATACAGAATG
1 CGCCACAAAGGTTATACAGAATG
26509073 C
1 C
26509074 TACAAAAGCA
Statistics
Matches: 70, Mismatches: 18, Indels: 5
0.75 0.19 0.05
Matches are distributed among these distances:
20 3 0.04
21 12 0.17
22 5 0.07
23 50 0.71
ACGTcount: A:0.42, C:0.21, G:0.19, T:0.17
Consensus pattern (23 bp):
CGCCACAAAGGTTATACAGAATG
Found at i:26509080 original size:21 final size:21
Alignment explanation
Indices: 26509004--26509081 Score: 68
Period size: 23 Copynumber: 3.5 Consensus size: 21
26508994 ACACAAAATG
* *
26509004 TGCCACAAAGGCTATACAGAA
1 TGCCACAAAAGTTATACAGAA
*
26509025 TGCGC-CATAAAGGTTATACAGAG
1 TGC-CACA-AAA-GTTATACAGAA
26509048 TGCACCACAAAAGTTATACAGAA
1 TG--CCACAAAAGTTATACAGAA
*
26509071 TGCTACAAAAG
1 TGCCACAAAAG
26509082 CACCCCAAGA
Statistics
Matches: 46, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
21 13 0.28
22 3 0.07
23 23 0.50
24 4 0.09
25 3 0.07
ACGTcount: A:0.42, C:0.21, G:0.19, T:0.18
Consensus pattern (21 bp):
TGCCACAAAAGTTATACAGAA
Found at i:26510374 original size:21 final size:19
Alignment explanation
Indices: 26510346--26510388 Score: 50
Period size: 21 Copynumber: 2.2 Consensus size: 19
26510336 GAATAGGAGG
*
26510346 TCTTCTAACCTTATCTTCAC
1 TCTTCTAAACTTATCTTC-C
*
26510366 TCTTACTAAAGTTATCTTCC
1 TCTT-CTAAACTTATCTTCC
26510386 TCT
1 TCT
26510389 CCTCCAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.21, C:0.30, G:0.02, T:0.47
Consensus pattern (19 bp):
TCTTCTAAACTTATCTTCC
Found at i:26519893 original size:24 final size:26
Alignment explanation
Indices: 26519866--26519936 Score: 87
Period size: 25 Copynumber: 2.9 Consensus size: 26
26519856 GCTATAATCT
* *
26519866 GGAAGCTCAT-GCGAGCCA-ATATTA
1 GGAAGCTCATGGAGAGCCATAAATTA
26519890 GGAAGCTC-TGGAGAGCCATAAATTA
1 GGAAGCTCATGGAGAGCCATAAATTA
*
26519915 GGAAGCTCAT-AAGAGCCATAAA
1 GGAAGCTCATGGAGAGCCATAAA
26519937 CGAGACTTAA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
23 1 0.02
24 15 0.37
25 24 0.59
26 1 0.02
ACGTcount: A:0.38, C:0.18, G:0.25, T:0.18
Consensus pattern (26 bp):
GGAAGCTCATGGAGAGCCATAAATTA
Found at i:26521269 original size:20 final size:20
Alignment explanation
Indices: 26521244--26521287 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
26521234 ATCTTGTTTT
*
26521244 ATTTGATTCCAATCAATTTG
1 ATTTGATTCCAATCAAATTG
**
26521264 ATTTGATTTTAATCAAATTG
1 ATTTGATTCCAATCAAATTG
26521284 ATTT
1 ATTT
26521288 AATGGATCCT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.32, C:0.09, G:0.09, T:0.50
Consensus pattern (20 bp):
ATTTGATTCCAATCAAATTG
Found at i:26525715 original size:20 final size:20
Alignment explanation
Indices: 26525690--26525733 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
26525680 ATCTTGTTTT
*
26525690 ATTTGATTCTAATCCAATTG
1 ATTTGATTCTAATCAAATTG
*
26525710 ATTTGATTTTAATCAAATTG
1 ATTTGATTCTAATCAAATTG
26525730 ATTT
1 ATTT
26525734 AATGGCAGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.32, C:0.09, G:0.09, T:0.50
Consensus pattern (20 bp):
ATTTGATTCTAATCAAATTG
Found at i:26526186 original size:19 final size:18
Alignment explanation
Indices: 26526142--26526191 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 18
26526132 AATTTATTCA
*
26526142 ATTTATATTTTATTTTAT
1 ATTTATATTTTTTTTTAT
**
26526160 ATAAATATTTTTTATTTAT
1 ATTTATATTTTTT-TTTAT
26526179 ATTTATATATTTT
1 ATTTATAT-TTTT
26526192 GTCCGCTAAC
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
18 10 0.40
19 11 0.44
20 4 0.16
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
ATTTATATTTTTTTTTAT
Found at i:26526190 original size:21 final size:20
Alignment explanation
Indices: 26526149--26526191 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
26526139 TCAATTTATA
26526149 TTTTATTTTATATAAATATT
1 TTTTATTTTATATAAATATT
* *
26526169 TTTTATTTATATTTATATATT
1 TTTTATTT-TATATAAATATT
26526190 TT
1 TT
26526192 GTCCGCTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (20 bp):
TTTTATTTTATATAAATATT
Found at i:26534274 original size:25 final size:25
Alignment explanation
Indices: 26534246--26534293 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
26534236 GCAATTAAGG
* *
26534246 TGTCTGAACTAAGTCCAATTTAATT
1 TGTCTAAACTAAGACCAATTTAATT
26534271 TGTCTAAACTAAGACCAATTTAA
1 TGTCTAAACTAAGACCAATTTAA
26534294 ATCACATAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.35
Consensus pattern (25 bp):
TGTCTAAACTAAGACCAATTTAATT
Found at i:26535510 original size:20 final size:21
Alignment explanation
Indices: 26535477--26535526 Score: 84
Period size: 20 Copynumber: 2.4 Consensus size: 21
26535467 CCACTTTTAT
26535477 TTTCTTTTTCTTTTTCAATCC
1 TTTCTTTTTCTTTTTCAATCC
26535498 TTTCTTTTT-TTTTTCAATCC
1 TTTCTTTTTCTTTTTCAATCC
*
26535518 TTTCCTTTT
1 TTTCTTTTT
26535527 GATTTTCTCT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
20 19 0.68
21 9 0.32
ACGTcount: A:0.08, C:0.22, G:0.00, T:0.70
Consensus pattern (21 bp):
TTTCTTTTTCTTTTTCAATCC
Found at i:26535532 original size:21 final size:20
Alignment explanation
Indices: 26535488--26535533 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
26535478 TTCTTTTTCT
**
26535488 TTTTCAATCCTTTCTTTTTT
1 TTTTCAATCCTTTCTTTTGA
26535508 TTTTCAATCCTTTCCTTTTGA
1 TTTTCAATCCTTT-CTTTTGA
26535529 TTTTC
1 TTTTC
26535534 TCTCAATTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 13 0.57
21 10 0.43
ACGTcount: A:0.11, C:0.22, G:0.02, T:0.65
Consensus pattern (20 bp):
TTTTCAATCCTTTCTTTTGA
Found at i:26537305 original size:17 final size:17
Alignment explanation
Indices: 26537283--26537316 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
26537273 ATCCACTAAT
*
26537283 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
26537300 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
26537317 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:26541944 original size:17 final size:17
Alignment explanation
Indices: 26541922--26541955 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
26541912 ATCCACTAAT
*
26541922 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
26541939 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
26541956 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:26546583 original size:17 final size:17
Alignment explanation
Indices: 26546561--26546594 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
26546551 ATCCACTAAT
*
26546561 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
26546578 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
26546595 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:26547379 original size:14 final size:14
Alignment explanation
Indices: 26547360--26547386 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
26547350 TTAGACTTTA
26547360 CAATTTTTTTAATT
1 CAATTTTTTTAATT
26547374 CAATTTTTTTAAT
1 CAATTTTTTTAAT
26547387 CTATCCTAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (14 bp):
CAATTTTTTTAATT
Found at i:26548598 original size:25 final size:25
Alignment explanation
Indices: 26548562--26548623 Score: 81
Period size: 25 Copynumber: 2.5 Consensus size: 25
26548552 TCTAGACGAT
26548562 AGACACAA-TTAAGGTGTCTGAACTA
1 AGAC-CAATTTAAGGTGTCTGAACTA
** *
26548587 AGACCAATTTAATTTGTCTTAACTA
1 AGACCAATTTAAGGTGTCTGAACTA
26548612 AGACCAATTTAA
1 AGACCAATTTAA
26548624 ATCACATAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 3 0.09
25 30 0.91
ACGTcount: A:0.40, C:0.16, G:0.13, T:0.31
Consensus pattern (25 bp):
AGACCAATTTAAGGTGTCTGAACTA
Found at i:26553692 original size:24 final size:24
Alignment explanation
Indices: 26553642--26553693 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
26553632 TTTCTAGAAA
* * *
26553642 ATTTAGCATTTATTAGTATCATAT
1 ATTTAGCACTTATTAGCATAATAT
*
26553666 ATTTAGCACTTATTAGCATAATTT
1 ATTTAGCACTTATTAGCATAATAT
26553690 ATTT
1 ATTT
26553694 GACTTACTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.10, G:0.08, T:0.50
Consensus pattern (24 bp):
ATTTAGCACTTATTAGCATAATAT
Found at i:26554822 original size:21 final size:21
Alignment explanation
Indices: 26554789--26554841 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
26554779 AGACTACTAC
* *
26554789 TTTTCCTTGTTGTT-TTTTACT
1 TTTTACTTTTTGTTATTTT-CT
26554810 TTTTACTTTTTGTTATTTTCT
1 TTTTACTTTTTGTTATTTTCT
*
26554831 TTCTACTTTTT
1 TTTTACTTTTT
26554842 CACTATTTTG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 24 0.86
22 4 0.14
ACGTcount: A:0.08, C:0.13, G:0.06, T:0.74
Consensus pattern (21 bp):
TTTTACTTTTTGTTATTTTCT
Found at i:26560050 original size:3 final size:3
Alignment explanation
Indices: 26560042--26560081 Score: 62
Period size: 3 Copynumber: 13.3 Consensus size: 3
26560032 AATCTAATAC
* *
26560042 TAT TAT TAT TAT TAT TAT TAT TGT TAT TAT TGT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
26560082 CACTCATTTC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:26570672 original size:24 final size:25
Alignment explanation
Indices: 26570609--26570660 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
26570599 GCTATTAATG
* *
26570609 GGAAGCTCATGAGAGCTATATATCA
1 GGAAACTCATGAGAGCCATATATCA
*
26570634 GGAAACTCAAGAGAGCCA-ATATCA
1 GGAAACTCATGAGAGCCATATATCA
26570658 GGA
1 GGA
26570661 TGCTTATGAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 9 0.38
25 15 0.62
ACGTcount: A:0.40, C:0.17, G:0.25, T:0.17
Consensus pattern (25 bp):
GGAAACTCATGAGAGCCATATATCA
Found at i:26570975 original size:5 final size:5
Alignment explanation
Indices: 26570965--26570989 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
26570955 ATCATTTTAT
26570965 ATTCA ATTCA ATTCA ATTCA ATTCA
1 ATTCA ATTCA ATTCA ATTCA ATTCA
26570990 CATCTTTGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (5 bp):
ATTCA
Found at i:26576732 original size:12 final size:12
Alignment explanation
Indices: 26576715--26576748 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
26576705 TTCATCACAC
26576715 GGCCGTGTGGTA
1 GGCCGTGTGGTA
*
26576727 GGCCGTATGGTA
1 GGCCGTGTGGTA
*
26576739 GACCGTGTGG
1 GGCCGTGTGG
26576749 CTGGTCGTGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.12, C:0.18, G:0.47, T:0.24
Consensus pattern (12 bp):
GGCCGTGTGGTA
Found at i:26576833 original size:50 final size:50
Alignment explanation
Indices: 26576756--26576850 Score: 138
Period size: 50 Copynumber: 1.9 Consensus size: 50
26576746 TGGCTGGTCG
26576756 TGTGGGGCCACATGGGTATGTGAGATTACACGGGTAAATCAGGTAAACCA
1 TGTGGGGCCACATGGGTATGTGAGATTACACGGGTAAATCAGGTAAACCA
** * *
26576806 TGTGGGGGGACAT-GGTCATGTGCGATTACACGGGTAATTCAGGTA
1 TGTGGGGCCACATGGGT-ATGTGAGATTACACGGGTAAATCAGGTA
26576851 GGCCATATGG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
49 3 0.08
50 37 0.93
ACGTcount: A:0.26, C:0.15, G:0.35, T:0.24
Consensus pattern (50 bp):
TGTGGGGCCACATGGGTATGTGAGATTACACGGGTAAATCAGGTAAACCA
Found at i:26591535 original size:25 final size:25
Alignment explanation
Indices: 26591473--26591535 Score: 81
Period size: 25 Copynumber: 2.5 Consensus size: 25
26591463 ATTTTAATAA
**
26591473 CTTGTGTGAGCATTCTGATTCACAG
1 CTTGTGTGAGCATTCCAATTCACAG
* *
26591498 CTCGCGTGAGCATTCCAATTCACAG
1 CTTGTGTGAGCATTCCAATTCACAG
*
26591523 CTTGTGTGGGCAT
1 CTTGTGTGAGCAT
26591536 ACATGTACAG
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.19, C:0.24, G:0.25, T:0.32
Consensus pattern (25 bp):
CTTGTGTGAGCATTCCAATTCACAG
Found at i:26592692 original size:15 final size:16
Alignment explanation
Indices: 26592672--26592701 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26592662 TGGTGCCTTA
26592672 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
26592687 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
26592702 AGTATGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Found at i:26593641 original size:67 final size:67
Alignment explanation
Indices: 26593549--26593684 Score: 211
Period size: 67 Copynumber: 2.0 Consensus size: 67
26593539 CACGGCCATG
**
26593549 TGTCCCTTGTAAATTTTTATAGGTTACATTTCGAGTGTTACA-AGGCCTGGCACACGGGCATGTG
1 TGTCCCTTGTAAATTTTTATAGGTTACATTTCGAAAGTTACACA-GCCTGGCACACGGGCATGTG
26593613 GCT
65 GCT
* * *
26593616 TGTCCCTTGTAAGTTTTTATAGGTTACATTTTGAAAGTTACACAGCCTGGCACACGGGCGTGTGG
1 TGTCCCTTGTAAATTTTTATAGGTTACATTTCGAAAGTTACACAGCCTGGCACACGGGCATGTGG
26593681 CT
66 CT
26593683 TG
1 TG
26593685 CTGTGTGAAC
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
67 62 0.98
68 1 0.02
ACGTcount: A:0.21, C:0.19, G:0.26, T:0.35
Consensus pattern (67 bp):
TGTCCCTTGTAAATTTTTATAGGTTACATTTCGAAAGTTACACAGCCTGGCACACGGGCATGTGG
CT
Done.