Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 79 of 284
Found at i:26598511 original size:23 final size:23
Alignment explanation
Indices: 26598457--26598526 Score: 61
Period size: 24 Copynumber: 3.0 Consensus size: 23
26598447 ACTAATCTTC
* *
26598457 ATTTAATTAGTACAAATATATATT
1 ATTTAATTA-TAAAAAAATATATT
*
26598481 -TTGAAATTATAAAAAAATATATT
1 ATT-TAATTATAAAAAAATATATT
* *
26598504 ATTTAATTAATTAAAAATTATAT
1 ATTTAATT-ATAAAAAAATATAT
26598527 AAAATCGTGT
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
23 18 0.49
24 19 0.51
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.44
Consensus pattern (23 bp):
ATTTAATTATAAAAAAATATATT
Found at i:26601324 original size:19 final size:19
Alignment explanation
Indices: 26601271--26601342 Score: 56
Period size: 19 Copynumber: 3.6 Consensus size: 19
26601261 TTTTTTTCAT
* *
26601271 TTTATTTAATATTTTTATAAT
1 TTTA-TTAAT-TTTTTAAAAA
* *
26601292 TTTAATAATGTTTTAAAAA
1 TTTATTAATTTTTTAAAAA
26601311 TTTATTAATTTTTTTCAAAAA
1 TTTATTAA-TTTTTT-AAAAA
*
26601332 ATTA-TAATTTT
1 TTTATTAATTTT
26601343 AGATAAATCT
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
19 18 0.43
20 12 0.29
21 12 0.29
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.58
Consensus pattern (19 bp):
TTTATTAATTTTTTAAAAA
Found at i:26601325 original size:20 final size:20
Alignment explanation
Indices: 26601271--26601342 Score: 58
Period size: 20 Copynumber: 3.6 Consensus size: 20
26601261 TTTTTTTCAT
* * *
26601271 TTTATTTAATATTTTTATAAT
1 TTTA-TTAATTTTTTTAAAAA
* *
26601292 TTTAATAA-TGTTTTAAAAA
1 TTTATTAATTTTTTTAAAAA
26601311 TTTATTAATTTTTTTCAAAAA
1 TTTATTAATTTTTTT-AAAAA
*
26601332 ATTA-TAATTTT
1 TTTATTAATTTT
26601343 AGATAAATCT
Statistics
Matches: 41, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
19 14 0.34
20 15 0.37
21 12 0.29
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.58
Consensus pattern (20 bp):
TTTATTAATTTTTTTAAAAA
Found at i:26605595 original size:20 final size:19
Alignment explanation
Indices: 26605558--26605608 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 19
26605548 AAGAAAAAAA
*
26605558 ATAAAAATTTATAGAAAATC
1 ATAAAAA-TTATAAAAAATC
*
26605578 ATAAAAATTATACAAAAATT
1 ATAAAAATTATA-AAAAATC
26605598 ATTAAAAATTA
1 A-TAAAAATTA
26605609 CAATATTGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 5 0.19
20 13 0.48
21 9 0.33
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.31
Consensus pattern (19 bp):
ATAAAAATTATAAAAAATC
Found at i:26606244 original size:25 final size:24
Alignment explanation
Indices: 26606197--26606244 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
26606187 TAAAAAGATA
26606197 GAAAATTACAAAAATCATATAAAT
1 GAAAATTACAAAAATCATATAAAT
* *
26606221 GAAAATTTATAAAAATCATTTAAA
1 GAAAA-TTACAAAAATCATATAAA
26606245 AAGTAAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 5 0.24
25 16 0.76
ACGTcount: A:0.60, C:0.06, G:0.04, T:0.29
Consensus pattern (24 bp):
GAAAATTACAAAAATCATATAAAT
Found at i:26606288 original size:22 final size:22
Alignment explanation
Indices: 26606261--26606308 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
26606251 AAATAAAAAT
*
26606261 AAAAATAAT-ATAATTATGAAGA
1 AAAAATAATAAAAATTATGAA-A
*
26606283 AAAAATTATAAAAATTATGAAA
1 AAAAATAATAAAAATTATGAAA
26606305 AAAA
1 AAAA
26606309 TTAAATATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 13 0.57
23 10 0.43
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.25
Consensus pattern (22 bp):
AAAAATAATAAAAATTATGAAA
Found at i:26606313 original size:19 final size:20
Alignment explanation
Indices: 26606281--26606318 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
26606271 TAATTATGAA
*
26606281 GAAAAAATTATAAAAATTAT
1 GAAAAAAATATAAAAATTAT
*
26606301 GAAAAAAAT-TAAATATTA
1 GAAAAAAATATAAAAATTA
26606319 AAAATATTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 8 0.50
20 8 0.50
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (20 bp):
GAAAAAAATATAAAAATTAT
Found at i:26607003 original size:18 final size:19
Alignment explanation
Indices: 26606982--26607022 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
26606972 ATTTTTTCAT
*
26606982 TTTTCTATATTT-TTATTA
1 TTTTCTATATTTCTAATTA
26607000 TTTTCTATATTTCTAATTA
1 TTTTCTATATTTCTAATTA
26607019 TTTT
1 TTTT
26607023 AAATGTAGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.22, C:0.07, G:0.00, T:0.71
Consensus pattern (19 bp):
TTTTCTATATTTCTAATTA
Found at i:26608882 original size:23 final size:23
Alignment explanation
Indices: 26608846--26608907 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
26608836 TGTTGGGTCG
*
26608846 TGTAGA-CCTATTTTGGTCTAAT
1 TGTAGAGCCCATTTTGGTCTAAT
* *
26608868 TGTAGTGCCCATTTTGGTCTGAT
1 TGTAGAGCCCATTTTGGTCTAAT
26608891 TGTAGAGCCCATTTTGG
1 TGTAGAGCCCATTTTGG
26608908 GCTGGGAATA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
22 5 0.14
23 30 0.86
ACGTcount: A:0.18, C:0.16, G:0.24, T:0.42
Consensus pattern (23 bp):
TGTAGAGCCCATTTTGGTCTAAT
Found at i:26611437 original size:243 final size:243
Alignment explanation
Indices: 26610974--26611444 Score: 782
Period size: 242 Copynumber: 1.9 Consensus size: 243
26610964 TACACGATGT
* * * *
26610974 TGGTCACACGAGCTATGGAGAATCCTCAACAAATGTAGGACTTCAGCCATCGGTAGGAAATTCAA
1 TGGTCACACGAGCTATGGAGAATCCTCAAAAAATGTAGGACCTCAGCCATCGATAGCAAATTCAA
* *
26611039 GACCAGCACCTGAAACATGAAATCCCTAATGACATGTCATTTGTATCTTAAGAATTCTTAAGGTT
66 GACCAGCACCCGAAACATGAAATCCCTAATGACATGTCATTTGTATCCTAAGAATTCTTAAGGTT
* *
26611104 CAACCGGGACTTGATATCTGTCAATTCATCACAATGTGGATACATTTTCATATATATGATTCATT
131 CAACCGGGACTTGATATCCGTCAATTCATCACAATGTGGATACATTCTCATATATATGATTCATT
26611169 TACATTAAAAACAACATAGTAAACATTTAATTTGGTAAGTTCGTATGC
196 TACATTAAAAACAACATAGTAAACATTTAATTTGGTAAGTTCGTATGC
* * *
26611217 TGGTCATACGAGCTGTGGAGAATCCTCAAAAAATGTAGGACCTCAGCCATC-ATAGCACATTCAA
1 TGGTCACACGAGCTATGGAGAATCCTCAAAAAATGTAGGACCTCAGCCATCGATAGCAAATTCAA
*
26611281 GACCAGCACCCGAAACATGAAATCCTTAATGACATGTCATTTGTATCCTAAGAATTCTTAAGGTT
66 GACCAGCACCCGAAACATGAAATCCCTAATGACATGTCATTTGTATCCTAAGAATTCTTAAGGTT
* *
26611346 CAACCGGGACTTGATATCCGTCGATTCGTCACAATGTGGATACATTCTCATATATATTGATTCAT
131 CAACCGGGACTTGATATCCGTCAATTCATCACAATGTGGATACATTCTCATATATA-TGATTCAT
**
26611411 TTACATTAAAAACAATGTAGTAAACATTTAATTT
195 TTACATTAAAAACAACATAGTAAACATTTAATTT
26611445 AAATAATATT
Statistics
Matches: 211, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
242 124 0.59
243 87 0.41
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.30
Consensus pattern (243 bp):
TGGTCACACGAGCTATGGAGAATCCTCAAAAAATGTAGGACCTCAGCCATCGATAGCAAATTCAA
GACCAGCACCCGAAACATGAAATCCCTAATGACATGTCATTTGTATCCTAAGAATTCTTAAGGTT
CAACCGGGACTTGATATCCGTCAATTCATCACAATGTGGATACATTCTCATATATATGATTCATT
TACATTAAAAACAACATAGTAAACATTTAATTTGGTAAGTTCGTATGC
Found at i:26613584 original size:45 final size:44
Alignment explanation
Indices: 26613531--26613629 Score: 146
Period size: 44 Copynumber: 2.2 Consensus size: 44
26613521 TTTGGTTCGC
26613531 TGTAATGGAATAGAGGCGTAATAGCAATTCAAT-TGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAG-AATTC-ATGTGTTTGGTTGAA
* *
26613576 TGTAATGGAATAGAGGCGTAATAGTATTCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGAATTCATGTGTTTGGTTGAA
*
26613620 TGGAATGGAA
1 TGTAATGGAA
26613630 GTGTAATAGC
Statistics
Matches: 50, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
43 1 0.02
44 25 0.50
45 24 0.48
ACGTcount: A:0.31, C:0.05, G:0.29, T:0.34
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGAATTCATGTGTTTGGTTGAA
Found at i:26613904 original size:120 final size:120
Alignment explanation
Indices: 26613767--26614324 Score: 981
Period size: 120 Copynumber: 4.7 Consensus size: 120
26613757 ATATTTTAAC
*
26613767 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTGATAAAATTCTTAGTATTAAATAT
1 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAGTATTAAATAT
* *
26613832 TCTTATATGAATTTACTAAAATCATAATATATGACACTATAAAATGTAATTTGAA
66 TCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAATTTGAA
26613887 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAGTATTAAATAT
1 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAGTATTAAATAT
26613952 TCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAATTTGAA
66 TCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAATTTGAA
* *
26614007 ATAATAATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAGTATTAAATAT
1 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAGTATTAAATAT
26614072 TCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAATTTGAA
66 TCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAATTTGAA
* * *
26614127 ATAATAATTATTAAATATATTTTAATTAAAATTTATAATTTAATAAAACTCTTAGTATTAAATAT
1 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAGTATTAAATAT
* *
26614192 TCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAA
66 TCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAATTTGAA
* * **
26614247 ATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAACATTAAATAT
1 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAGTATTAAATAT
*
26614312 TCTTATATAAATT
66 TCTTATATGAATT
26614325 CTTAACATTA
Statistics
Matches: 420, Mismatches: 18, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
120 420 1.00
ACGTcount: A:0.49, C:0.04, G:0.03, T:0.44
Consensus pattern (120 bp):
ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAGTATTAAATAT
TCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAATTTGAA
Found at i:26613922 original size:18 final size:17
Alignment explanation
Indices: 26613901--26613935 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26613891 TTATTATTAA
*
26613901 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
26613919 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
26613936 TCTTAGTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:26614315 original size:16 final size:15
Alignment explanation
Indices: 26614290--26614336 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
26614280 TATAATTTAA
26614290 TAAAATTCTTAACAT
1 TAAAATTCTTAACAT
*
26614305 TAAATATTCTT-ATA-
1 TAAA-ATTCTTAACAT
26614319 T-AAATTCTTAACAT
1 TAAAATTCTTAACAT
26614333 TAAA
1 TAAA
26614337 TATAATTGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 8
0.72 0.06 0.22
Matches are distributed among these distances:
12 6 0.23
13 4 0.15
14 2 0.08
15 8 0.31
16 6 0.23
ACGTcount: A:0.47, C:0.11, G:0.00, T:0.43
Consensus pattern (15 bp):
TAAAATTCTTAACAT
Found at i:26614336 original size:14 final size:14
Alignment explanation
Indices: 26614292--26614337 Score: 51
Period size: 12 Copynumber: 3.3 Consensus size: 14
26614282 TAATTTAATA
26614292 AAATTCTTAACATT
1 AAATTCTTAACATT
*
26614306 AAATATTCTT-ATA-T
1 -AA-ATTCTTAACATT
26614320 AAATTCTTAACATT
1 AAATTCTTAACATT
26614334 AAAT
1 AAAT
26614338 ATAATTGTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
12 6 0.23
13 4 0.15
14 6 0.23
15 4 0.15
16 6 0.23
ACGTcount: A:0.46, C:0.11, G:0.00, T:0.43
Consensus pattern (14 bp):
AAATTCTTAACATT
Found at i:26625957 original size:26 final size:25
Alignment explanation
Indices: 26625928--26626295 Score: 205
Period size: 26 Copynumber: 14.2 Consensus size: 25
26625918 AAACGAAACA
* *
26625928 AAATAATATATAGAACAATTTGAAGT
1 AAATAATATATA-AACAATTTAAAAT
* *
26625954 AAATAGTATA-AAACAATTTAAAGT
1 AAATAATATATAAACAATTTAAAAT
* * *
26625978 AAATAATGTGTAAAACAAATTAAAAT
1 AAATAATATAT-AAACAATTTAAAAT
* *
26626004 AAATAATATACAAAGAAATTTAAAAT
1 AAATAATATATAAA-CAATTTAAAAT
*
26626030 AAATAACATATAAGACAATTTAAAAT
1 AAATAATATATAA-ACAATTTAAAAT
*
26626056 -AAT-ATATA-AAA-AGTTTAAAAT
1 AAATAATATATAAACAATTTAAAAT
* *
26626077 AAATAATATACAAAACAATTAAAAAAAT
1 AAATAATATA-TAAACAATT--TAAAAT
*
26626105 AAATGATATATATAAAAAACAATTCAAAAT
1 AAAT-A-ATATAT--A-AACAATTTAAAAT
* ** *
26626135 AAAGAATATATGTGACAGTTTAAAAAT
1 AAATAATATAT-AAACAATTT-AAAAT
*
26626162 AAATAATATATAAAAAATTTAAAAT
1 AAATAATATATAAACAATTTAAAAT
** * * *
26626187 GGATAATAGTTTGAAATAGTTTAAAAT
1 AAATAATA-TAT-AAACAATTTAAAAT
* ** * * *
26626214 ACATTGTATGTGGAA-AACTTAAAAT
1 AAATAATATAT-AAACAATTTAAAAT
26626239 AAAT-A-ATA-AAACAATTTAAAAT
1 AAATAATATATAAACAATTTAAAAT
*
26626261 AAATAATATATGAGAAAAATGTTTAAAAT
1 AAATAATATAT-A-AACAA--TTTAAAAT
26626290 AAATAA
1 AAATAA
26626296 ATAAATAACA
Statistics
Matches: 264, Mismatches: 51, Indels: 51
0.72 0.14 0.14
Matches are distributed among these distances:
21 11 0.04
22 17 0.06
23 10 0.04
24 26 0.10
25 32 0.12
26 80 0.30
27 36 0.14
28 15 0.06
29 16 0.06
30 13 0.05
31 1 0.00
32 7 0.03
ACGTcount: A:0.60, C:0.04, G:0.07, T:0.29
Consensus pattern (25 bp):
AAATAATATATAAACAATTTAAAAT
Found at i:26626055 original size:22 final size:21
Alignment explanation
Indices: 26626030--26626078 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
26626020 AATTTAAAAT
26626030 AAATAACATATAAGACAA-TTTA
1 AAATAACATATAA-A-AAGTTTA
*
26626052 AAATAATATATAAAAAGTTTA
1 AAATAACATATAAAAAGTTTA
26626073 AAATAA
1 AAATAA
26626079 ATAATATACA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 2 0.08
21 11 0.44
22 12 0.48
ACGTcount: A:0.63, C:0.04, G:0.04, T:0.29
Consensus pattern (21 bp):
AAATAACATATAAAAAGTTTA
Found at i:26626079 original size:47 final size:47
Alignment explanation
Indices: 26626004--26626105 Score: 134
Period size: 47 Copynumber: 2.2 Consensus size: 47
26625994 AAATTAAAAT
* *
26626004 AAATAATATACAAAGAAATTTAAAATAAATAACATATAAGACAATTTA
1 AAATAATATACAAAGAAATTTAAAATAAATAACATACAAAACAA-TTA
* * *
26626052 AAATAATATATAAA-AAGTTTAAAATAAATAATATACAAAACAATTA
1 AAATAATATACAAAGAAATTTAAAATAAATAACATACAAAACAATTA
*
26626098 AAAAAATA
1 AAATAATA
26626106 AATGATATAT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
46 10 0.21
47 25 0.52
48 13 0.27
ACGTcount: A:0.66, C:0.05, G:0.03, T:0.26
Consensus pattern (47 bp):
AAATAATATACAAAGAAATTTAAAATAAATAACATACAAAACAATTA
Found at i:26626134 original size:30 final size:29
Alignment explanation
Indices: 26626082--26626145 Score: 76
Period size: 32 Copynumber: 2.1 Consensus size: 29
26626072 AAAATAAATA
*
26626082 ATATACAAAACAATTAAAAAAATAAATGATAT
1 ATATAAAAAACAATT-AAAAAATAAA-GA-AT
*
26626114 ATATAAAAAACAATT-CAAAATAAAGAAT
1 ATATAAAAAACAATTAAAAAATAAAGAAT
26626142 ATAT
1 ATAT
26626146 GTGACAGTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 6 0.20
29 2 0.07
30 8 0.27
32 14 0.47
ACGTcount: A:0.66, C:0.06, G:0.03, T:0.25
Consensus pattern (29 bp):
ATATAAAAAACAATTAAAAAATAAAGAAT
Found at i:26626268 original size:29 final size:30
Alignment explanation
Indices: 26626235--26626303 Score: 79
Period size: 29 Copynumber: 2.3 Consensus size: 30
26626225 GGAAAACTTA
*
26626235 AAATAAATAATAAAACA-ATTTAAAATAAAT
1 AAATAAATAAGAAAA-ATATTTAAAATAAAT
* * *
26626265 -AATATATGAGAAAAATGTTTAAAATAAAT
1 AAATAAATAAGAAAAATATTTAAAATAAAT
26626294 AAATAAATAA
1 AAATAAATAA
26626304 CAAATTTGCG
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
28 1 0.03
29 23 0.74
30 7 0.23
ACGTcount: A:0.67, C:0.01, G:0.04, T:0.28
Consensus pattern (30 bp):
AAATAAATAAGAAAAATATTTAAAATAAAT
Found at i:26627828 original size:50 final size:50
Alignment explanation
Indices: 26627707--26627801 Score: 129
Period size: 50 Copynumber: 1.9 Consensus size: 50
26627697 ATTAAATACA
* * * *
26627707 AAATTTAAACAAATAAT-ATAAACAAATATTTATATTTATGTAAAAACACC
1 AAATCTAAACAAAAAATAAT-AATAAATACTTATATTTATGTAAAAACACC
*
26627757 AAATCTAAACAAAAAATAATAATAAATACTTATATTTATTTAAAA
1 AAATCTAAACAAAAAATAATAATAAATACTTATATTTATGTAAAA
26627802 CATCAGATCT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
50 37 0.95
51 2 0.05
ACGTcount: A:0.58, C:0.08, G:0.01, T:0.33
Consensus pattern (50 bp):
AAATCTAAACAAAAAATAATAATAAATACTTATATTTATGTAAAAACACC
Found at i:26629242 original size:24 final size:24
Alignment explanation
Indices: 26629215--26629291 Score: 66
Period size: 24 Copynumber: 3.1 Consensus size: 24
26629205 AACTATTTTG
*
26629215 AAATAAAGTTTTGATTTTTAAGAA
1 AAATAAAGTTTTGATTTTTAAAAA
** *
26629239 AAATAGTGATTTT-TTTTTTAAAAA
1 AAATAAAG-TTTTGATTTTTAAAAA
* *
26629263 AAGAGAAAGTTTAGATTTTTAAAATA
1 AA-ATAAAGTTTTGATTTTTAAAA-A
26629289 AAA
1 AAA
26629292 ATTTGTTTTT
Statistics
Matches: 40, Mismatches: 9, Indels: 7
0.71 0.16 0.12
Matches are distributed among these distances:
24 20 0.50
25 17 0.43
26 3 0.08
ACGTcount: A:0.48, C:0.00, G:0.12, T:0.40
Consensus pattern (24 bp):
AAATAAAGTTTTGATTTTTAAAAA
Found at i:26629361 original size:152 final size:149
Alignment explanation
Indices: 26629103--26629392 Score: 422
Period size: 152 Copynumber: 1.9 Consensus size: 149
26629093 AAGTTTTGAA
*
26629103 TTTTTTAAAAAAAAATAAAGTTTAGATTTTTAAAATAAATTTTTTTCGTAGTCATATTAAAAGAA
1 TTTTTTAAAAAAAAAGAAAGTTTAGATTTTTAAAATAAATTTTTTTCGTAGTCATATTAAAAGAA
*
26629168 AAGTTTAAATTCTTAAAATAAAATTTTGATCTTTTTTAACTATTTTGAAATAAAGTTTTGATTTT
66 AAGTTTAAATTCTTAAAATAAAATTTTGATCTTTTTTAACTATTTTGAAATAAAGTTTTAATTTT
26629233 TAAGAAAAATAGTGATTTT
131 TAAGAAAAATAGTGATTTT
* ** * *
26629252 TTTTTTAAAAAAAGAGAAAGTTTAGATTTTTAAAATAAAAATTTGTTTTTTTAGTCATTTTAAAG
1 TTTTTTAAAAAAAAAGAAAGTTTAGATTTTTAAAAT--AAATTT-TTTTCGTAGTCATATTAAAA
* ** *
26629317 GAAAAGTTTAAATTTTTTTCAA-AAAGTTTTGAT-TTTTTTCAACTATTTTGAAATAAAGTTTTA
63 GAAAAGTTTAAA-TTCTTAAAATAAAATTTTGATCTTTTTT-AACTATTTTGAAATAAAGTTTTA
26629380 ATTTTTAAGAAAA
126 ATTTTTAAGAAAA
26629393 GTAATGACTT
Statistics
Matches: 125, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
149 34 0.27
151 12 0.10
152 73 0.58
153 6 0.05
ACGTcount: A:0.41, C:0.03, G:0.09, T:0.46
Consensus pattern (149 bp):
TTTTTTAAAAAAAAAGAAAGTTTAGATTTTTAAAATAAATTTTTTTCGTAGTCATATTAAAAGAA
AAGTTTAAATTCTTAAAATAAAATTTTGATCTTTTTTAACTATTTTGAAATAAAGTTTTAATTTT
TAAGAAAAATAGTGATTTT
Found at i:26629367 original size:19 final size:20
Alignment explanation
Indices: 26629318--26629358 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
26629308 ATTTTAAAGG
**
26629318 AAAAGTTTAAATTTTTTTCA
1 AAAAGTTTTGATTTTTTTCA
26629338 AAAAGTTTTGATTTTTTTCA
1 AAAAGTTTTGATTTTTTTCA
26629358 A
1 A
26629359 CTATTTTGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.37, C:0.05, G:0.07, T:0.51
Consensus pattern (20 bp):
AAAAGTTTTGATTTTTTTCA
Found at i:26640517 original size:143 final size:143
Alignment explanation
Indices: 26640248--26640517 Score: 326
Period size: 143 Copynumber: 1.9 Consensus size: 143
26640238 ATTTTAAGAA
* * * **
26640248 TCTTTACAGTTTGCTGATTTACAATCGCAACTGATATTATTAAAGCTTCTTGATTTACGATCATG
1 TCTTAACAGTTTGCTGATTTACAATCGCAACTGATATCATTAAAGCTTCTTGATTTACAATCACA
** ** * * **
26640313 TTTTAACTTCATTGATATATGATCATGAACAATTCATCTAAAGTTCATTGGTTTATGATCACGAC
66 ACTTAACTTCATTGATATACAATCATGAACAATTCATCTAAAGCTCATTGATTTACAATCACGAC
26640378 TCCTCTTGACTCC
131 TCCTCTTGACTCC
** * *
26640391 TCTTAACAGTTTGCTGATTTATGATCGCAACTGGTATCATTAAAGC-TCGTTGATTTACAATCGC
1 TCTTAACAGTTTGCTGATTTACAATCGCAACTGATATCATTAAAGCTTC-TTGATTTACAATCAC
* * * * *
26640455 AACTTAAGTTCATTGATTTACAATCATGAATAATTCATCTAGAGCTCGTTGATTTACAATCAC
65 AACTTAACTTCATTGATATACAATCATGAACAATTCATCTAAAGCTCATTGATTTACAATCAC
26640518 AACTTGTAAT
Statistics
Matches: 104, Mismatches: 22, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
142 2 0.02
143 102 0.98
ACGTcount: A:0.29, C:0.19, G:0.13, T:0.39
Consensus pattern (143 bp):
TCTTAACAGTTTGCTGATTTACAATCGCAACTGATATCATTAAAGCTTCTTGATTTACAATCACA
ACTTAACTTCATTGATATACAATCATGAACAATTCATCTAAAGCTCATTGATTTACAATCACGAC
TCCTCTTGACTCC
Found at i:26644717 original size:42 final size:43
Alignment explanation
Indices: 26644563--26644728 Score: 194
Period size: 43 Copynumber: 3.9 Consensus size: 43
26644553 GTACAGTAAT
* * *
26644563 AATGCC-ATATCCCAGATATGGTCTTACATGTAATCTCGTATC
1 AATGCCAATATCCCAGACATGGTCTTACACGTAATCTCATATC
* * * ** *
26644605 AATGCCAATAGCTCAGCCATGGTCTTACACAAAATCACATATC
1 AATGCCAATATCCCAGACATGGTCTTACACGTAATCTCATATC
* *
26644648 GATGCCAATGTCCCAGACATGGTCTTACACG-AACTCTCATATC
1 AATGCCAATATCCCAGACATGGTCTTACACGTAA-TCTCATATC
*
26644691 AATG-CAATATCCCAGATATGGTCTTACACGTAATCTCA
1 AATGCCAATATCCCAGACATGGTCTTACACGTAATCTCA
26644729 GTAACCCTAA
Statistics
Matches: 102, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
42 37 0.36
43 65 0.64
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.28
Consensus pattern (43 bp):
AATGCCAATATCCCAGACATGGTCTTACACGTAATCTCATATC
Found at i:26649729 original size:17 final size:18
Alignment explanation
Indices: 26649702--26649737 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
26649692 ATGCAGCAAT
26649702 AGAAGAAAAACATGGAGA
1 AGAAGAAAAACATGGAGA
*
26649720 AGAA-AAAAACATTGAGA
1 AGAAGAAAAACATGGAGA
26649737 A
1 A
26649738 AATGAGTGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.64, C:0.06, G:0.22, T:0.08
Consensus pattern (18 bp):
AGAAGAAAAACATGGAGA
Found at i:26651425 original size:205 final size:200
Alignment explanation
Indices: 26651068--26651673 Score: 708
Period size: 205 Copynumber: 3.0 Consensus size: 200
26651058 AATTAGAAAA
* * * *
26651068 TTGAATGCCTTAATAAGGATGCATGGTATGGTG-TTTCTATCTTGTAATGCTTGAAAAATGTGTA
1 TTGAATGCCTTAATATGGATGCATGATATAGTGTTTTC-ATCTTGTAATGCTTG-AAAA-CTGTA
* * *
26651132 TAAACCAAAATGGATGAAAGTATAATTGCATCTTGTG--TTT-T-AAAATTAGTAATATTTCTGT
63 TAAACCAGAGTGGATGAAAGTATAATTGCATCTTGTGTTTTTGTCAAAATTAGCAATATTTCTGT
* * * *
26651193 CATTAACTGTTGATTTGCATGTTCTGCTGCTCTGCCTTGTTTTCATTTAGATGATTTTACCATAT
128 CATTAACTGCTGATTT-CATGTTCTGCTGCTCTGCCTTGTTTTCATTTGGATAATTATACCATAT
26651258 ATAATGTAAG
192 A-AATGTAAG
* *
26651268 TTGACTGCCTTAATATGGATTCATGATATAGTGTTTTCATCTTGTAATGCTTGAAAACTGTATAA
1 TTGAATGCCTTAATATGGATGCATGATATAGTGTTTTCATCTTGTAATGCTTGAAAACTGTATAA
* * * *
26651333 ACCAGAGTGGATTG-AAGTATTATTGGATCTTGTGTTTTGTGTACCAAAATTAGCAATATATCTA
66 ACCAGAGTGGA-TGAAAGTATAATTGCATCTTGTGTTTT-TGT--CAAAATTAGCAATATTTCTG
** *
26651397 TCATTAACTGCAAAGTTTCATGTTCTGCTGCTCTCCCTTGTTTTCATTTGGATAATTATACCATA
127 TCATTAACTGCTGA-TTTCATGTTCTGCTGCTCTGCCTTGTTTTCATTTGGATAATTATACCATA
26651462 TAAGATGTAAG
191 TAA-ATGTAAG
*
26651473 TTGAATTG-CTTAATATGGATGCATGATATAGTGTTTTCATCTTATAATGCTTGAAAACTGTATA
1 TTGAA-TGCCTTAATATGGATGCATGATATAGTGTTTTCATCTTGTAATGCTTGAAAACTG--TA
*
26651537 TAAACCTGAGTGGATGAAAGTATAATTGCAT-TTGTGTTTTATGTTTCAAAACTTA-CTAATATT
63 TAAACCAGAGTGGATGAAAGTATAATTGCATCTTGTGTTTT-TG--TCAAAA-TTAGC-AATATT
* ** * * *
26651600 TCTGTCATTGAACTGCTGATTTTATTGTTCCACTGCTCTGCCTTGATTTCTTTTGGATAATTGTA
123 TCTGTCATT-AACTGCTGATTTCA-TGTTCTGCTGCTCTGCCTTGTTTTCATTTGGATAATTATA
26651665 CCATATAAA
186 CCATATAAA
26651674 ATGCAAGAGA
Statistics
Matches: 347, Mismatches: 38, Indels: 35
0.83 0.09 0.08
Matches are distributed among these distances:
198 34 0.10
199 6 0.02
200 45 0.13
201 5 0.01
202 1 0.00
204 1 0.00
205 133 0.38
206 24 0.07
207 48 0.14
208 50 0.14
ACGTcount: A:0.29, C:0.13, G:0.17, T:0.41
Consensus pattern (200 bp):
TTGAATGCCTTAATATGGATGCATGATATAGTGTTTTCATCTTGTAATGCTTGAAAACTGTATAA
ACCAGAGTGGATGAAAGTATAATTGCATCTTGTGTTTTTGTCAAAATTAGCAATATTTCTGTCAT
TAACTGCTGATTTCATGTTCTGCTGCTCTGCCTTGTTTTCATTTGGATAATTATACCATATAAAT
GTAAG
Found at i:26651798 original size:39 final size:40
Alignment explanation
Indices: 26651755--26651836 Score: 139
Period size: 39 Copynumber: 2.1 Consensus size: 40
26651745 GAGGAAACAA
26651755 AAGAAATATATAGAGAACATC-AAAAGGAATCAACAGAGT
1 AAGAAATATATAGAGAACATCGAAAAGGAATCAACAGAGT
* *
26651794 AAGAAATATATAGAGAATATCGAAAAGGAATCAACATAGT
1 AAGAAATATATAGAGAACATCGAAAAGGAATCAACAGAGT
26651834 AAG
1 AAG
26651837 GAATCAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
39 20 0.50
40 20 0.50
ACGTcount: A:0.56, C:0.09, G:0.18, T:0.17
Consensus pattern (40 bp):
AAGAAATATATAGAGAACATCGAAAAGGAATCAACAGAGT
Found at i:26654061 original size:32 final size:32
Alignment explanation
Indices: 26654022--26654114 Score: 150
Period size: 32 Copynumber: 2.9 Consensus size: 32
26654012 TTAGATATTG
* *
26654022 ATTATGTTTTAAGCTTGTTAGATATTTAATTT
1 ATTATGTTTTAAGCTTGTTGGATATTGAATTT
*
26654054 ATTATGTTTTAAGCTTGTTGGTTATTGAATTT
1 ATTATGTTTTAAGCTTGTTGGATATTGAATTT
*
26654086 ATTATGTTTTAAGCTTGTTGGATACTGAA
1 ATTATGTTTTAAGCTTGTTGGATATTGAA
26654115 ATGATTGACA
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 56 1.00
ACGTcount: A:0.26, C:0.04, G:0.17, T:0.53
Consensus pattern (32 bp):
ATTATGTTTTAAGCTTGTTGGATATTGAATTT
Found at i:26655991 original size:18 final size:19
Alignment explanation
Indices: 26655956--26655994 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
26655946 AGTTCAAAAA
26655956 TATTAAAAAAAAACATTTT
1 TATTAAAAAAAAACATTTT
* *
26655975 TATTCAAAAATAA-ATTTT
1 TATTAAAAAAAAACATTTT
26655993 TA
1 TA
26655995 AAGTTTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (19 bp):
TATTAAAAAAAAACATTTT
Found at i:26656152 original size:56 final size:57
Alignment explanation
Indices: 26656009--26656162 Score: 159
Period size: 59 Copynumber: 2.7 Consensus size: 57
26655999 TTTTTTTAAC
* * **
26656009 TTTTAAAATTAGAATTAAATTGATAAGTTTTGTAAATGTTCAGAGCTAAATTTATTGAA
1 TTTTTAAATTAGAATTAAATTGATAAATTTTGTAAACATTCAGAGCTAAA--TATTGAA
* * * * *
26656068 TTTTTAGAATTAGAATTAGA-TGACAAATTTTGTAAACATTGAGGGCTAAA-ATTGAG
1 TTTTTA-AATTAGAATTAAATTGATAAATTTTGTAAACATTCAGAGCTAAATATTGAA
* * *
26656124 TTTTTAAATTAGGATCAAATTGATAAATTGTGTAAACAT
1 TTTTTAAATTAGAATTAAATTGATAAATTTTGTAAACAT
26656163 GGAATGACTA
Statistics
Matches: 79, Mismatches: 14, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
55 10 0.13
56 28 0.35
59 29 0.37
60 12 0.15
ACGTcount: A:0.40, C:0.05, G:0.16, T:0.40
Consensus pattern (57 bp):
TTTTTAAATTAGAATTAAATTGATAAATTTTGTAAACATTCAGAGCTAAATATTGAA
Found at i:26656424 original size:21 final size:21
Alignment explanation
Indices: 26656400--26656439 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
26656390 ATTTAATTTA
*
26656400 ATAAATTAATATATAATTATG
1 ATAAATCAATATATAATTATG
*
26656421 ATAAATCAATGTATAATTA
1 ATAAATCAATATATAATTA
26656440 CAGTTTGAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.53, C:0.03, G:0.05, T:0.40
Consensus pattern (21 bp):
ATAAATCAATATATAATTATG
Found at i:26660841 original size:22 final size:21
Alignment explanation
Indices: 26660794--26660841 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
26660784 TTTAATTTGG
* *
26660794 AATTTAATTTTAGGATTTTAG
1 AATTTAAGTTTAGGATTTTAA
* *
26660815 TATTTAAGGTTTAGGGTTTTAA
1 AATTTAA-GTTTAGGATTTTAA
26660837 AATTT
1 AATTT
26660842 TATAAGAATA
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.31, C:0.00, G:0.17, T:0.52
Consensus pattern (21 bp):
AATTTAAGTTTAGGATTTTAA
Found at i:26661416 original size:89 final size:91
Alignment explanation
Indices: 26661255--26661474 Score: 261
Period size: 89 Copynumber: 2.4 Consensus size: 91
26661245 TTAAGGAAGC
* * * *
26661255 AAAAAGCCTTCAAACTTTTTCAAAAAAAGCAATTAAGCCTCAGCTCTCTTTATTTGCACTCATTT
1 AAAAAGCC-TCAAACCTTTTC-AAAAAAGCAATTAAACCCCAGCTCTCTTTATTTGCACTCAATT
*
26661320 GGGTACTTAAACTTTTAAAATGCATAAAA
64 GGGTACTTAAACTTTCAAAATGCAT-AAA
* * *
26661349 AAAAAGCCTGAAACCTTTTCAAAACAAGTAATTAACCCCCA-CT-T-TTT-TTTGCACTCAATTG
1 AAAAAGCCTCAAACCTTTTCAAAA-AAGCAATTAAACCCCAGCTCTCTTTATTTGCACTCAATTG
* *
26661410 GGTACTTGAACTTTCAAAATGCATCAA
65 GGTACTTAAACTTTCAAAATGCATAAA
* *
26661437 AAAGACCCTCAAA-CTTTTCAAAAAAGCAATTAAACCCC
1 AAAAAGCCTCAAACCTTTTCAAAAAAGCAATTAAACCCC
26661475 TGCTTTTATT
Statistics
Matches: 111, Mismatches: 14, Indels: 10
0.82 0.10 0.07
Matches are distributed among these distances:
86 13 0.12
87 10 0.09
88 12 0.11
89 35 0.32
90 3 0.03
91 1 0.01
92 6 0.05
93 23 0.21
94 8 0.07
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (91 bp):
AAAAAGCCTCAAACCTTTTCAAAAAAGCAATTAAACCCCAGCTCTCTTTATTTGCACTCAATTGG
GTACTTAAACTTTCAAAATGCATAAA
Found at i:26661559 original size:14 final size:13
Alignment explanation
Indices: 26661536--26661579 Score: 52
Period size: 14 Copynumber: 3.2 Consensus size: 13
26661526 AAATTTTATT
26661536 AAAATTTAATAAA
1 AAAATTTAATAAA
*
26661549 AAAATTTTAATATTA
1 AAAA-TTTAATA-AA
*
26661564 AAAATTTATTAAA
1 AAAATTTAATAAA
26661577 AAA
1 AAA
26661580 TAGAAAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
13 8 0.31
14 13 0.50
15 5 0.19
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
AAAATTTAATAAA
Found at i:26661615 original size:28 final size:27
Alignment explanation
Indices: 26661574--26661643 Score: 70
Period size: 28 Copynumber: 2.5 Consensus size: 27
26661564 AAAATTTATT
* *
26661574 AAAAAATAGAAAAAAATATA-AGAATCGTA
1 AAAAAATA-TAAAAAATATAGA-AAT-ATA
*
26661603 AAAAAATATAAAATATATAGAAATATA
1 AAAAAATATAAAAAATATAGAAATATA
26661630 AAAAAATTATAAAA
1 AAAAAA-TATAAAA
26661644 TTTTATAAAG
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
27 8 0.22
28 19 0.53
29 9 0.25
ACGTcount: A:0.71, C:0.01, G:0.06, T:0.21
Consensus pattern (27 bp):
AAAAAATATAAAAAATATAGAAATATA
Found at i:26661909 original size:29 final size:29
Alignment explanation
Indices: 26661851--26661913 Score: 81
Period size: 29 Copynumber: 2.2 Consensus size: 29
26661841 GTCATTAAAT
* **
26661851 TTTTTTATGATTTTTATAAAATTTTATAA
1 TTTTTTACGATTTTTATAAAAAATTATAA
* *
26661880 TTTTTTACGTTTTTTATAAAAAATTCTAA
1 TTTTTTACGATTTTTATAAAAAATTATAA
26661909 TTTTT
1 TTTTT
26661914 AATAAATTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (29 bp):
TTTTTTACGATTTTTATAAAAAATTATAA
Found at i:26661969 original size:28 final size:27
Alignment explanation
Indices: 26661903--26661969 Score: 71
Period size: 28 Copynumber: 2.4 Consensus size: 27
26661893 TTATAAAAAA
*
26661903 TTCTAATTTTTAATAAATTTTAATTTTT
1 TTCT-ATTTTTAATAAAATTTAATTTTT
** *
26661931 TTAAATCTTTTCATAAAATTTAATATTTT
1 TTCTAT-TTTTAATAAAATTTAAT-TTTT
26661960 TTCTATTTTT
1 TTCTATTTTT
26661970 TTTATTTTTC
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
27 2 0.06
28 21 0.68
29 8 0.26
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (27 bp):
TTCTATTTTTAATAAAATTTAATTTTT
Found at i:26662003 original size:19 final size:20
Alignment explanation
Indices: 26661965--26662004 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
26661955 ATTTTTTCTA
*
26661965 TTTTTTTTATTTTTCATAATT
1 TTTTTTTTACTTTT-ATAATT
26661986 TTTTTTTTACTTTT-TAATT
1 TTTTTTTTACTTTTATAATT
26662005 GGAGCAGCGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 5 0.28
21 13 0.72
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (20 bp):
TTTTTTTTACTTTTATAATT
Found at i:26662177 original size:85 final size:84
Alignment explanation
Indices: 26662016--26662170 Score: 195
Period size: 85 Copynumber: 1.8 Consensus size: 84
26662006 GAGCAGCGGA
* * * * *
26662016 TTAATTGCTTTTTTGAAAAATTTTGAGGGTCTTTTTGATGCATTTTGAAAACTCAAGTACCCAAT
1 TTAATTGCTTTTTTGAAAAAGTTTGAGAGCCCTTTTGATGCATTTTGAAAACTCAAGTACCCAAC
26662081 TGAGTGAAAAAAAAGTTGT
66 TGAGTGAAAAAAAAGTTGT
* * * * *
26662100 TTAATTGCTTTTTTTGAAGAAGTTTGAGAGCCCTTTTGATGTATTTT-AAAAGTTCAAGTGCTCA
1 TTAATTGC-TTTTTTGAAAAAGTTTGAGAGCCCTTTTGATGCATTTTGAAAA-CTCAAGTACCCA
26662164 ACTGAGT
64 ACTGAGT
26662171 ACAAAAAGAA
Statistics
Matches: 59, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
84 12 0.20
85 47 0.80
ACGTcount: A:0.30, C:0.10, G:0.19, T:0.41
Consensus pattern (84 bp):
TTAATTGCTTTTTTGAAAAAGTTTGAGAGCCCTTTTGATGCATTTTGAAAACTCAAGTACCCAAC
TGAGTGAAAAAAAAGTTGT
Found at i:26662885 original size:19 final size:17
Alignment explanation
Indices: 26662823--26662877 Score: 56
Period size: 19 Copynumber: 3.0 Consensus size: 17
26662813 TTTCATGAGT
*
26662823 TAAATAAATAATCATAAAA
1 TAAATAAAT-ATTA-AAAA
*
26662842 TAATTAATGATATTAAAAA
1 TAAATAA--ATATTAAAAA
26662861 TAAATAAATATTAAAAA
1 TAAATAAATATTAAAAA
26662878 ATGTAATATA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
17 10 0.32
19 16 0.52
20 3 0.10
21 2 0.06
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (17 bp):
TAAATAAATATTAAAAA
Found at i:26663355 original size:17 final size:17
Alignment explanation
Indices: 26663333--26663366 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
26663323 GGAGTTCTAC
26663333 AAATAAAAATAATTATA
1 AAATAAAAATAATTATA
* *
26663350 AAATAAGAATCATTATA
1 AAATAAAAATAATTATA
26663367 TAAAAATATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.29
Consensus pattern (17 bp):
AAATAAAAATAATTATA
Found at i:26669460 original size:21 final size:20
Alignment explanation
Indices: 26669434--26669473 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
26669424 ATTTAGTTCA
26669434 ATAAATCAATATATAATTATG
1 ATAAATCAATATAT-ATTATG
*
26669455 ATAAATCAATGTATATTAT
1 ATAAATCAATATATATTAT
26669474 AGTTTGAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.50, C:0.05, G:0.05, T:0.40
Consensus pattern (20 bp):
ATAAATCAATATATATTATG
Found at i:26673923 original size:143 final size:143
Alignment explanation
Indices: 26673660--26673929 Score: 351
Period size: 143 Copynumber: 1.9 Consensus size: 143
26673650 ATTTTAAGAA
* * * **
26673660 TCTTTACAGTTTGCTGATTTACAATCGCAACTGATATCATTAAAGCTTGTTGATTTACGATCATG
1 TCTTAACAGTTTGCTGATTTACAATCGCAACTGATATCATTAAAGCTCGTTGATTTACAATCACA
** ** * * * *
26673725 TTTTAAGTTCATTGATATATGATCATGAGCAATTCATCTAAAGTTCACTGGTTTACTATCACGAC
66 ACTTAAGTTCATTGATATACAACCATGAACAATTCATCTAAAGTTCACTGATTTACGATCACGAC
26673790 TCCTCTTGACTCC
131 TCCTCTTGACTCC
* * *
26673803 TCTTAACAGTTTGCTGATTTACGATCGCAACTGGTATCATTAAAGCTCGTTGATTTACAATCGCA
1 TCTTAACAGTTTGCTGATTTACAATCGCAACTGATATCATTAAAGCTCGTTGATTTACAATCACA
* * * **
26673868 ACTTAAGTTCATTGATTTACAACCATGAATAATTCATCTAGAGTTCGTTGATTTACGATCAC
66 ACTTAAGTTCATTGATATACAACCATGAACAATTCATCTAAAGTTCACTGATTTACGATCAC
26673930 AACTTGTAAT
Statistics
Matches: 106, Mismatches: 21, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
143 106 1.00
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (143 bp):
TCTTAACAGTTTGCTGATTTACAATCGCAACTGATATCATTAAAGCTCGTTGATTTACAATCACA
ACTTAAGTTCATTGATATACAACCATGAACAATTCATCTAAAGTTCACTGATTTACGATCACGAC
TCCTCTTGACTCC
Found at i:26678067 original size:43 final size:42
Alignment explanation
Indices: 26677962--26678126 Score: 168
Period size: 43 Copynumber: 3.9 Consensus size: 42
26677952 TACAGTAATA
* * * * *
26677962 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCGTATTG
1 ATGCCATATCCCAGACATGGTCTTACACGAAATCTCATATCG
* * ** *
26678004 ATGCCAATAGCTCATCCATGGTCTTACACGAAATCACATATCG
1 ATGCC-ATATCCCAGACATGGTCTTACACGAAATCTCATATCG
* *
26678047 ATGCCAATGTCCCAGACATGGGTCTTACACGAACTCTCATATCG
1 ATGCC-ATATCCCAGACAT-GGTCTTACACGAAATCTCATATCG
* * *
26678091 ATGCCATATCCCAAATATGGTCTTACACGTAATCTC
1 ATGCCATATCCCAGACATGGTCTTACACGAAATCTC
26678127 GGTAACCCTA
Statistics
Matches: 99, Mismatches: 22, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
42 21 0.21
43 51 0.52
44 27 0.27
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAGACATGGTCTTACACGAAATCTCATATCG
Found at i:26679431 original size:22 final size:22
Alignment explanation
Indices: 26679396--26679452 Score: 87
Period size: 22 Copynumber: 2.6 Consensus size: 22
26679386 ATAATCAAAT
* *
26679396 TGGTGTTGCAACATCTAGGGTG
1 TGGTGTTGCGACATCCAGGGTG
*
26679418 TGGTGTCGCGACATCCAGGGTG
1 TGGTGTTGCGACATCCAGGGTG
26679440 TGGTGTTGCGACA
1 TGGTGTTGCGACA
26679453 CTCAAGATAG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.16, C:0.18, G:0.39, T:0.28
Consensus pattern (22 bp):
TGGTGTTGCGACATCCAGGGTG
Found at i:26681743 original size:18 final size:18
Alignment explanation
Indices: 26681722--26681758 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
26681712 ATATTAATAA
*
26681722 ACTAATATTTATTTAATT
1 ACTAATATTTAATTAATT
26681740 ACTAATATTTAATTAATT
1 ACTAATATTTAATTAATT
26681758 A
1 A
26681759 ATTAATATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.51
Consensus pattern (18 bp):
ACTAATATTTAATTAATT
Found at i:26682220 original size:23 final size:23
Alignment explanation
Indices: 26682189--26682239 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
26682179 ACCTACTTTC
* *
26682189 TTACTGTAGTAATTTTCGGGGTA
1 TTACAGTAGTAATTTTCGGGATA
26682212 TTACAGTAGTAATTTTCGGGATA
1 TTACAGTAGTAATTTTCGGGATA
26682235 TTACA
1 TTACA
26682240 ATTCTCTCCC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.27, C:0.10, G:0.22, T:0.41
Consensus pattern (23 bp):
TTACAGTAGTAATTTTCGGGATA
Found at i:26683839 original size:50 final size:50
Alignment explanation
Indices: 26683786--26684166 Score: 494
Period size: 50 Copynumber: 7.5 Consensus size: 50
26683776 ACTACCAATT
* * * ** * * *
26683786 GCCATATCCCATATATGGTCTTACATGGGAGTTCTCATATCGGTGCCCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAC
* * *
26683836 GCCATGTACCAGACATAGTCTTACA-GGCGACCTCTCATCCCGGTGCCAAC
1 GCCATGTCCCAGACATGGTCTTACATGG-GACCTCTCATCTCGGTGCCAAC
*
26683886 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGATGCCAAC
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAC
*
26683936 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTGGTGCCAAC
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAC
*
26683986 GCCATGTCCCAGACATGGTCTTACATGGGACCTTTCATCTCGGTGCCAAC
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAC
* * * *
26684036 ACCATGTCCAAGACATGGTCTTATATGGGACCTCTCATCTCGGTGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAC
* * * *
26684086 GCCATATCCCAGACATGGTCTTACATGGGACCTCTCATAATTTCAATGATGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTC---ATCTC---GGTGCCAAC
26684142 GCCATGTCCCAGACATGGTCTTACA
1 GCCATGTCCCAGACATGGTCTTACA
26684167 CTAGCTCACA
Statistics
Matches: 292, Mismatches: 31, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
49 2 0.01
50 252 0.86
51 2 0.01
53 4 0.01
56 32 0.11
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAC
Found at i:26684000 original size:150 final size:150
Alignment explanation
Indices: 26683729--26684124 Score: 512
Period size: 150 Copynumber: 2.6 Consensus size: 150
26683719 GATAATAACA
* * ** * *
26683729 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGAGATGTTTC--CT-GTACTACCAATTGCCAT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG-A-TGCCAA-TGCCAT
* * ** * *
26683791 ATCCCATATATGGTCTTACATGGGAGTTCTCATATCGGTGCCCATGCCATGTACCAGACATAGTC
63 ATCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAACGCCATGTACCAGACATAGTC
26683856 TTACA-GGCGACCTCTCATCCCGG
128 TTACATGG-GACCTCTCATCCCGG
* *
26683879 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGATGCCAACGCCATGTC
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGATGCCAATGCCATATC
* * * *
26683944 CCAGACATGGTCTTACATGGGACCTCTCATCTTGGTGCCAACGCCATGTCCCAGACATGGTCTTA
66 CCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAACGCCATGTACCAGACATAGTCTTA
* *
26684009 CATGGGACCTTTCATCTCGG
131 CATGGGACCTCTCATCCCGG
* * * *
26684029 TGCCAACACCATGTCCAAGACATGGTCTTATATGGGACCTCTCATCTCGGTGCCAATGCCATATC
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGATGCCAATGCCATATC
26684094 CCAGACATGGTCTTACATGGGACCTCTCATA
66 CCAGACATGGTCTTACATGGGACCTCTCATA
26684125 ATTTCAATGA
Statistics
Matches: 215, Mismatches: 27, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
150 204 0.95
151 7 0.03
152 3 0.01
153 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.27
Consensus pattern (150 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGATGCCAATGCCATATC
CCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAACGCCATGTACCAGACATAGTCTTA
CATGGGACCTCTCATCCCGG
Found at i:26684232 original size:48 final size:48
Alignment explanation
Indices: 26684140--26684232 Score: 123
Period size: 48 Copynumber: 1.9 Consensus size: 48
26684130 AATGATGCCA
* * * *
26684140 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGATGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACGAGATCACACACCGATGTCG
* * *
26684188 ATGCCATGTCCCAGACATGGTCTTATACGAGATCGCACGCCGATG
1 ATGCCATGTCCCAGACATGGTCTTACACGAGATCACACACCGATG
26684233 CCATATCTTA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 38 1.00
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.25
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACGAGATCACACACCGATGTCG
Found at i:26686873 original size:23 final size:23
Alignment explanation
Indices: 26686832--26686876 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
26686822 TTTCTTACTG
** *
26686832 TAGTAATTTTTGGGGTATTACAC
1 TAGTAATTTTCAGGATATTACAC
26686855 TAGTAATTTTCAGGATATTACA
1 TAGTAATTTTCAGGATATTACA
26686877 ACATAACCCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.31, C:0.09, G:0.18, T:0.42
Consensus pattern (23 bp):
TAGTAATTTTCAGGATATTACAC
Found at i:26689159 original size:22 final size:22
Alignment explanation
Indices: 26689131--26689214 Score: 82
Period size: 22 Copynumber: 3.8 Consensus size: 22
26689121 GTGCTTTAAT
*
26689131 AGTAGGCACTAAAGTGCGAATC
1 AGTAGGCACTAAAGTGCAAATC
* * *
26689153 AGTAGGCACCATAGTGCAAAAC
1 AGTAGGCACTAAAGTGCAAATC
*
26689175 AGTAGGCA-TCATAGTG-AAAGTC
1 AGTAGGCACT-AAAGTGCAAA-TC
*
26689197 AGTAGGCACTGAAGTGCA
1 AGTAGGCACTAAAGTGCA
26689215 GAATAATTAA
Statistics
Matches: 50, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
21 3 0.06
22 45 0.90
23 2 0.04
ACGTcount: A:0.37, C:0.18, G:0.27, T:0.18
Consensus pattern (22 bp):
AGTAGGCACTAAAGTGCAAATC
Found at i:26692224 original size:39 final size:39
Alignment explanation
Indices: 26692181--26692454 Score: 340
Period size: 39 Copynumber: 7.1 Consensus size: 39
26692171 ATCGAGTATT
* * * *
26692181 CTGAATTATTGCTCAATCAAGCAAGACTTACTAAATATA
1 CTGAATTGTTGCTCAATCGAGCAAAACTTACTGAATATA
* * *
26692220 CTGAA-TGCTGCTCAATTGAGCAAAA-TCTACTGAACATA
1 CTGAATTGTTGCTCAATCGAGCAAAACT-TACTGAATATA
26692258 CTGAATTGTTGCTCAATCGAGCAAAACTTACTGAATATA
1 CTGAATTGTTGCTCAATCGAGCAAAACTTACTGAATATA
* ** * **
26692297 CT-AAATGCAGCTCAATCGAGCAAAA-TCTACTAAACGTA
1 CTGAATTGTTGCTCAATCGAGCAAAACT-TACTGAATATA
* *
26692335 CTGAATTGTTGCTCAATCAAGCAAAACTTACTAAATATA
1 CTGAATTGTTGCTCAATCGAGCAAAACTTACTGAATATA
* *
26692374 CGGAATTGTTGCTCAATCGAGCAAAATTTACTGAATATA
1 CTGAATTGTTGCTCAATCGAGCAAAACTTACTGAATATA
*
26692413 CTGAATTGTTGCTCAATCGAGAAAAACTTACTGAATATA
1 CTGAATTGTTGCTCAATCGAGCAAAACTTACTGAATATA
26692452 CTG
1 CTG
26692455 TGTAATACCC
Statistics
Matches: 200, Mismatches: 29, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
37 2 0.01
38 59 0.29
39 137 0.69
40 2 0.01
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29
Consensus pattern (39 bp):
CTGAATTGTTGCTCAATCGAGCAAAACTTACTGAATATA
Found at i:26692274 original size:77 final size:77
Alignment explanation
Indices: 26692181--26692454 Score: 395
Period size: 77 Copynumber: 3.5 Consensus size: 77
26692171 ATCGAGTATT
* * *
26692181 CTGAATTATTGCTCAATCAAGCAAGACTTACTAAATATACTGAATGCTGCTCAATTGAGCAAAAT
1 CTGAATTGTTGCTCAATCAAGCAAAACTTACTAAATATACTGAATGCTGCTCAATCGAGCAAAAT
26692246 CTACTGAACATA
66 CTACTGAACATA
* * * *
26692258 CTGAATTGTTGCTCAATCGAGCAAAACTTACTGAATATACTAAATGCAGCTCAATCGAGCAAAAT
1 CTGAATTGTTGCTCAATCAAGCAAAACTTACTAAATATACTGAATGCTGCTCAATCGAGCAAAAT
* *
26692323 CTACTAAACGTA
66 CTACTGAACATA
* *
26692335 CTGAATTGTTGCTCAATCAAGCAAAACTTACTAAATATACGGAATTGTTGCTCAATCGAGCAAAA
1 CTGAATTGTTGCTCAATCAAGCAAAACTTACTAAATATACTGAA-TGCTGCTCAATCGAGCAAAA
* *
26692400 TTTACTGAATATA
65 TCTACTGAACATA
* * *
26692413 CTGAATTGTTGCTCAATCGAGAAAAACTTACTGAATATACTG
1 CTGAATTGTTGCTCAATCAAGCAAAACTTACTAAATATACTG
26692455 TGTAATACCC
Statistics
Matches: 173, Mismatches: 23, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
77 108 0.62
78 65 0.38
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29
Consensus pattern (77 bp):
CTGAATTGTTGCTCAATCAAGCAAAACTTACTAAATATACTGAATGCTGCTCAATCGAGCAAAAT
CTACTGAACATA
Found at i:26692394 original size:116 final size:116
Alignment explanation
Indices: 26692191--26692454 Score: 327
Period size: 116 Copynumber: 2.3 Consensus size: 116
26692181 CTGAATTATT
* * * ** *
26692191 GCTCAATCAAGCAAGACTTACTAAATATACTGAATGCTGCTCAATTGAGCAAAATCTACTGAACA
1 GCTCAATCGAGCAAAACTTACTAAACATACTGAATGCTGCTCAATCAAGCAAAATCTACTAAACA
*
26692256 TACTGAATTGTTGCTCAATCGAGCAAAACTTACTGAATATACT-AAATGCA
66 TACGGAATTGTTGCTCAATCGAGCAAAACTTACTGAATATACTGAAATGCA
* *
26692306 GCTCAATCGAGCAAAA-TCTACTAAACGTACTGAATTGTTGCTCAATCAAGCAAAA-CTTACTAA
1 GCTCAATCGAGCAAAACT-TACTAAACATACTGAA-TGCTGCTCAATCAAGCAAAATC-TACTAA
* * * **
26692369 ATATACGGAATTGTTGCTCAATCGAGCAAAATTTACTGAATATACTGAATTGTT
63 ACATACGGAATTGTTGCTCAATCGAGCAAAACTTACTGAATATACTGAAATGCA
* * *
26692423 GCTCAATCGAGAAAAACTTACTGAATATACTG
1 GCTCAATCGAGCAAAACTTACTAAACATACTG
26692455 TGTAATACCC
Statistics
Matches: 126, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
114 1 0.01
115 29 0.23
116 65 0.52
117 30 0.24
118 1 0.01
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (116 bp):
GCTCAATCGAGCAAAACTTACTAAACATACTGAATGCTGCTCAATCAAGCAAAATCTACTAAACA
TACGGAATTGTTGCTCAATCGAGCAAAACTTACTGAATATACTGAAATGCA
Found at i:26692610 original size:19 final size:19
Alignment explanation
Indices: 26692586--26692696 Score: 168
Period size: 19 Copynumber: 5.8 Consensus size: 19
26692576 AATCTTCAAG
26692586 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
26692605 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* **
26692624 AATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
26692643 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
** *
26692662 GATATATAATCTTAGATGT
1 GATATGCAATCTTAGATAT
26692681 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
26692697 AGATATAATT
Statistics
Matches: 81, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 81 1.00
ACGTcount: A:0.39, C:0.09, G:0.14, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:26692636 original size:38 final size:38
Alignment explanation
Indices: 26692593--26692696 Score: 190
Period size: 38 Copynumber: 2.7 Consensus size: 38
26692583 AAGGATATGC
26692593 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
1 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
*
26692631 AATCTTAGATATGATATGCAATCTTAGATATGATATAT
1 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
*
26692669 AATCTTAGATGTGATATGCAATCTTAGA
1 AATCTTAGATATGATATGCAATCTTAGA
26692697 AGATATAATT
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 64 1.00
ACGTcount: A:0.39, C:0.09, G:0.13, T:0.38
Consensus pattern (38 bp):
AATCTTAGATATGATATGCAATCTTAGATATAATATAT
Found at i:26693066 original size:21 final size:21
Alignment explanation
Indices: 26693022--26693066 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
26693012 ATTAAGTTTT
*
26693022 TTTTATTTTTTTAATTTACCA
1 TTTTATTTTTTTAATTTACAA
*
26693043 TTTTATTTATTTTTATTT-CAA
1 TTTTATTT-TTTTAATTTACAA
26693064 TTT
1 TTT
26693067 GGTCTAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 13 0.62
22 8 0.38
ACGTcount: A:0.22, C:0.07, G:0.00, T:0.71
Consensus pattern (21 bp):
TTTTATTTTTTTAATTTACAA
Found at i:26696387 original size:7 final size:7
Alignment explanation
Indices: 26696375--26696419 Score: 58
Period size: 7 Copynumber: 6.7 Consensus size: 7
26696365 TCAATCAGAA
*
26696375 AAAAAAC
1 AAAAAAG
26696382 AAAAAA-
1 AAAAAAG
*
26696388 AAGAAA-
1 AAAAAAG
26696394 AAAAAAG
1 AAAAAAG
26696401 AAAAAAG
1 AAAAAAG
26696408 AAAAAAG
1 AAAAAAG
26696415 AAAAA
1 AAAAA
26696420 GGAGAGGCCA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
6 10 0.29
7 25 0.71
ACGTcount: A:0.89, C:0.02, G:0.09, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:26696388 original size:10 final size:10
Alignment explanation
Indices: 26696373--26696420 Score: 55
Period size: 10 Copynumber: 4.9 Consensus size: 10
26696363 ATTCAATCAG
*
26696373 AAAAAAAA-C
1 AAAAAAAAGA
26696382 AAAAAAAAGA
1 AAAAAAAAGA
26696392 AAAAAAAAGA
1 AAAAAAAAGA
26696402 AAAAAGAAA-A
1 AAAAA-AAAGA
*
26696412 AAGAAAAAG
1 AAAAAAAAG
26696421 GAGAGGCCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
9 11 0.32
10 20 0.59
11 3 0.09
ACGTcount: A:0.88, C:0.02, G:0.10, T:0.00
Consensus pattern (10 bp):
AAAAAAAAGA
Found at i:26696394 original size:18 final size:17
Alignment explanation
Indices: 26696371--26696419 Score: 71
Period size: 17 Copynumber: 2.8 Consensus size: 17
26696361 ATATTCAATC
26696371 AGAAAAAAAACAAAAAAA
1 AGAAAAAAAA-AAAAAAA
*
26696389 AGAAAAAAAAAGAAAAA
1 AGAAAAAAAAAAAAAAA
26696406 AGAAAAAAGAAAAA
1 AGAAAAAA-AAAAA
26696420 GGAGAGGCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 14 0.50
18 14 0.50
ACGTcount: A:0.88, C:0.02, G:0.10, T:0.00
Consensus pattern (17 bp):
AGAAAAAAAAAAAAAAA
Found at i:26698106 original size:44 final size:44
Alignment explanation
Indices: 26698058--26698175 Score: 116
Period size: 44 Copynumber: 2.7 Consensus size: 44
26698048 TAATTCTACT
*
26698058 TCCCTGGACAACAGTGGAATAGATTGAAGATT-TCAGATCTTATC
1 TCCCTGGACAACAGTGGAATAGATTGAAGATTGTAAG-TCTTATC
* **
26698102 TCCCT-AAGCATTAGTGGAATAGATTGAAGATTGTAAGTCTTATC
1 TCCCTGGA-CAACAGTGGAATAGATTGAAGATTGTAAGTCTTATC
* * *
26698146 TCACTGCAGTC-GCAGTGGAATAGATTGAAG
1 TCCCTG--GACAACAGTGGAATAGATTGAAG
26698176 CACTAGCTTC
Statistics
Matches: 60, Mismatches: 9, Indels: 9
0.77 0.12 0.12
Matches are distributed among these distances:
43 1 0.02
44 38 0.63
45 20 0.33
46 1 0.02
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (44 bp):
TCCCTGGACAACAGTGGAATAGATTGAAGATTGTAAGTCTTATC
Found at i:26698132 original size:132 final size:132
Alignment explanation
Indices: 26697718--26698119 Score: 723
Period size: 132 Copynumber: 3.0 Consensus size: 132
26697708 CTGCATTGAC
*
26697718 AGTGAAGCAGATCGAAGATGGCGGATTTTACCTCCTTGTGGTTACAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCTTGTGGTTACAGTGGAGTACATTGAAGCCA
26697783 GTAATTCTACTTCCCTGGAAAATAGTGGAATAGATTGAATATTTAAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGAAAATAGTGGAATAGATTGAATATTTAAGATCTTATCTCCCTAAGCA
26697848 GT
131 GT
26697850 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCTTGTGGTTACAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCTTGTGGTTACAGTGGAGTACATTGAAGCCA
26697915 GTAATTCTACTTCCCTGGAAAATAGTGGAATAGATTGAATATTTAAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGAAAATAGTGGAATAGATTGAATATTTAAGATCTTATCTCCCTAAGCA
26697980 GT
131 GT
* * *
26697982 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTATATTAAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCTTGTGGTTACAGTGGAGTACATTGAAGCCA
* * * *
26698047 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGAAAATAGTGGAATAGATTGAATATTTAAGATCTTATCTCCCTAAGCA
*
26698112 TT
131 GT
26698114 AGTGGA
1 AGTGGA
26698120 ATAGATTGAA
Statistics
Matches: 261, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
132 261 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (132 bp):
AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCTTGTGGTTACAGTGGAGTACATTGAAGCCA
GTAATTCTACTTCCCTGGAAAATAGTGGAATAGATTGAATATTTAAGATCTTATCTCCCTAAGCA
GT
Found at i:26701711 original size:12 final size:12
Alignment explanation
Indices: 26701696--26701729 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
26701686 ACGACCACCG
*
26701696 CCACTTGTTGTA
1 CCACCTGTTGTA
*
26701708 CCACCTGATGTA
1 CCACCTGTTGTA
26701720 CCACCTGTTG
1 CCACCTGTTG
26701730 CACCTCCTAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.18, C:0.32, G:0.18, T:0.32
Consensus pattern (12 bp):
CCACCTGTTGTA
Found at i:26708547 original size:133 final size:136
Alignment explanation
Indices: 26708294--26708681 Score: 476
Period size: 133 Copynumber: 2.8 Consensus size: 136
26708284 CGTTACACTA
* * * ** *
26708294 CTCTCAACAGTTTGCTGATTTATGATCGCAACTGATATCATTAAAGCTTACTAATTTATGATCAC
1 CTCTTAACAGTTTGTTGATTTACGATCGCAACTGATATCATTAAAGCTCGCTGATTTATGATCAC
* *
26708359 GGCTTAAGTTCATTGATTTACGATCATGAAAAATTCATCTAGAATTCGTTGATTTACGATC-A-T
66 GGCTTAAGTTCATTGATTTACGATCATGAACAATTCATCTAGAGTTCGTTGATTTACGATCAACT
26708422 -GACTC
131 CGACTC
* * *
26708427 CTCTTAACAGTTTTTTGATTTACGATAGCAACTGATATCATTAAAGCTCGCTGATTTACGATCAC
1 CTCTTAACAGTTTGTTGATTTACGATCGCAACTGATATCATTAAAGCTCGCTGATTTATGATCAC
* * ** *
26708492 AGCTTAAGTTCATTGATTTACGATCATGAACAATTCATCTTGAGTTTTTTTATTTACGATCATGA
66 GGCTTAAGTTCATTGATTTACGATCATGAACAATTCATCTAGAGTTCGTTGATTTACGATCA--A
26708557 CTCCTCTCGACTC
129 -----CTCGACTC
* * *
26708570 CTCTTAGCAGTTTGTTGATTTACGATCTCAGCTGATATCATTAAAGCTCGCTGATTTATGATCAC
1 CTCTTAACAGTTTGTTGATTTACGATCGCAACTGATATCATTAAAGCTCGCTGATTTATGATCAC
* * * * *
26708635 GGTTTGAGTTCATTAATTTACGATAATAAACAATTCATCTAGAGTTC
66 GGCTTAAGTTCATTGATTTACGATCATGAACAATTCATCTAGAGTTC
26708682 AAAAATTTAC
Statistics
Matches: 215, Mismatches: 30, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
133 110 0.51
136 1 0.00
142 1 0.00
143 103 0.48
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (136 bp):
CTCTTAACAGTTTGTTGATTTACGATCGCAACTGATATCATTAAAGCTCGCTGATTTATGATCAC
GGCTTAAGTTCATTGATTTACGATCATGAACAATTCATCTAGAGTTCGTTGATTTACGATCAACT
CGACTC
Found at i:26708680 original size:143 final size:143
Alignment explanation
Indices: 26708422--26708680 Score: 401
Period size: 143 Copynumber: 1.8 Consensus size: 143
26708412 TTACGATCAT
*
26708422 GACTCCTCTTAACAGTTTTTTGATTTACGATAGCAACTGATATCATTAAAGCTCGCTGATTTACG
1 GACTCCTCTTAACAGTTTGTTGATTTACGATAGCAACTGATATCATTAAAGCTCGCTGATTTACG
* * * *
26708487 ATCACAGCTTAAGTTCATTGATTTACGATCATGAACAATTCATCTTGAGTTTTTTTATTTACGAT
66 ATCACAGCTTAAGTTCATTAATTTACGATAATAAACAATTCATCTAGAGTTTTTTTATTTACGAT
26708552 CATGACTCCTCTC
131 CATGACTCCTCTC
* ** * *
26708565 GACTCCTCTTAGCAGTTTGTTGATTTACGATCTCAGCTGATATCATTAAAGCTCGCTGATTTATG
1 GACTCCTCTTAACAGTTTGTTGATTTACGATAGCAACTGATATCATTAAAGCTCGCTGATTTACG
* * *
26708630 ATCACGGTTTGAGTTCATTAATTTACGATAATAAACAATTCATCTAGAGTT
66 ATCACAGCTTAAGTTCATTAATTTACGATAATAAACAATTCATCTAGAGTT
26708681 CAAAAATTTA
Statistics
Matches: 103, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
143 103 1.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.39
Consensus pattern (143 bp):
GACTCCTCTTAACAGTTTGTTGATTTACGATAGCAACTGATATCATTAAAGCTCGCTGATTTACG
ATCACAGCTTAAGTTCATTAATTTACGATAATAAACAATTCATCTAGAGTTTTTTTATTTACGAT
CATGACTCCTCTC
Found at i:26708788 original size:98 final size:99
Alignment explanation
Indices: 26708585--26708793 Score: 240
Period size: 98 Copynumber: 2.1 Consensus size: 99
26708575 AGCAGTTTGT
* * * * * *
26708585 TGATTTACGATCTCAGCTGATATCATTAAAGCTCGCTGATTTATGATCACGGTTTGAGTTCATTA
1 TGATTTACGATCGCAACTAATATCATTAAAGCTCGCTGATTTACGATCACGGCTTAAGTTCATTA
*
26708650 ATTTACGATAATAAACAATTCATCTAGAGTTCAA
66 ATTTACGATAATAAACAATTCATCTAAAGTTCAA
** * * * * *
26708684 AAATTTACGATCGCAACTAATATCATTAAAG-TCGTTGATTTACGATCATGGCTTAATTTTATTG
1 TGATTTACGATCGCAACTAATATCATTAAAGCTCGCTGATTTACGATCACGGCTTAAGTTCATTA
* * * * *
26708748 ATTTATGATCATGAACAATTCATTTAAAGTTCAC
66 ATTTACGATAATAAACAATTCATCTAAAGTTCAA
26708782 TGATTTACGATC
1 TGATTTACGATC
26708794 ACGACTCCTT
Statistics
Matches: 89, Mismatches: 21, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
98 63 0.71
99 26 0.29
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38
Consensus pattern (99 bp):
TGATTTACGATCGCAACTAATATCATTAAAGCTCGCTGATTTACGATCACGGCTTAAGTTCATTA
ATTTACGATAATAAACAATTCATCTAAAGTTCAA
Found at i:26708881 original size:133 final size:132
Alignment explanation
Indices: 26708686--26709095 Score: 484
Period size: 133 Copynumber: 3.1 Consensus size: 132
26708676 GAGTTCAAAA
* * * * *
26708686 ATTTACGATCGCAACTAATATCATTAAAG-TCGTTGATTTACGATCATGGCTTAATTTTATTGAT
1 ATTTACGATCGCAACTAATAACATTAAAGCTCGCTGATTTACGATCA-CGCTTAAGTTAATTGAT
* * * *
26708750 TTATGATCATGAACAATTCATTTAAAGTTCACTGATTTACGATCACGACTCCTTTTAACAGTTTA
65 TTACGATCATGAACAATTCATTTAGAGTTCGCTGATTTACGATCACGACTCCTTTTAACAGTTTG
*
26708815 CTG
130 TTG
* * * *
26708818 ATTTACAATCGCTATTAATAACATTAAAGCTCGCTGATTTACGATCACAGCTTAAGTTCATTGAT
1 ATTTACGATCGCAACTAATAACATTAAAGCTCGCTGATTTACGATCAC-GCTTAAGTTAATTGAT
* * * * * *
26708883 TTACGATCATGAACAATTCATCTAGAGTTCGCTAATTTACAATCACGACTCCTTTTGATAGTTCG
65 TTACGATCATGAACAATTCATTTAGAGTTCGCTGATTTACGATCACGACTCCTTTTAACAGTTTG
26708948 TTG
130 TTG
* * * *
26708951 ATTTACGATCGCAACTGATATA-ATCAAAGCTCGCT-AGTTTACGATCACGATTTCAGTTAATTG
1 ATTTACGATCGCAACTAATA-ACATTAAAGCTCGCTGA-TTTACGATCACG-CTTAAGTTAATTG
* * * * * *
26709014 ATTTACGATCATAAACACTTCATTTAGAGTTCGTTGATTTACGATCACGATTCCTCTTAACAATT
63 ATTTACGATCATGAACAATTCATTTAGAGTTCGCTGATTTACGATCACGACTCCTTTTAACAGTT
26709079 TGTTG
128 TGTTG
26709084 ATTTACGATCGC
1 ATTTACGATCGC
26709096 GACTGCTATT
Statistics
Matches: 234, Mismatches: 39, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
132 27 0.12
133 206 0.88
134 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (132 bp):
ATTTACGATCGCAACTAATAACATTAAAGCTCGCTGATTTACGATCACGCTTAAGTTAATTGATT
TACGATCATGAACAATTCATTTAGAGTTCGCTGATTTACGATCACGACTCCTTTTAACAGTTTGT
TG
Found at i:26709148 original size:133 final size:132
Alignment explanation
Indices: 26708744--26709157 Score: 316
Period size: 133 Copynumber: 3.1 Consensus size: 132
26708734 GCTTAATTTT
* * * * * * * *
26708744 ATTGATTTATGATCATGAACAATTCATTTAAAGTTCACTGATTTACGATCACGACTCCTTTTAAC
1 ATTGATTTACGATCATAAACAATTCATCTAGAGTTCGCTAATTTACAATCACGACTCCTCTTAAC
* *** * * * * * * * * *
26708809 AGTTTACTGATTTACAATCGCTATTAATA-ACATTAAAGCTCGCT-GATTTACGATCACAGCTTA
66 AATTCGTTGATTTACGATCGCAACTGATATA-ATCAAAACTCGCTAG-TTAACAATCACA-TTTA
* *
26708872 AGTTC
128 AATTA
* * * *
26708877 ATTGATTTACGATCATGAACAATTCATCTAGAGTTCGCTAATTTACAATCACGACTCCTTTTGAT
1 ATTGATTTACGATCATAAACAATTCATCTAGAGTTCGCTAATTTACAATCACGACTCCTCTTAAC
* * * * * *
26708942 AGTTCGTTGATTTACGATCGCAACTGATATAATCAAAGCTCGCTAGTTTACGATCACGATTTCAG
66 AATTCGTTGATTTACGATCGCAACTGATATAATCAAAACTCGCTAGTTAACAATCAC-ATTTAAA
26709007 TTA
130 TTA
* * * * * *
26709010 ATTGATTTACGATCATAAACACTTCATTTAGAGTTCGTTGATTTACGATCACGATTCCTCTTAAC
1 ATTGATTTACGATCATAAACAATTCATCTAGAGTTCGCTAATTTACAATCACGACTCCTCTTAAC
* * * * *
26709075 AATTTGTTGATTTACGATCGCGACTGCTATTAT-AAAACTCGCTA-TCATGAACAATTCA-TTTT
66 AATTCGTTGATTTACGATCGCAACTGATATAATCAAAACTCGCTAGT--T-AACAA-TCACATTT
26709137 AAATTA
127 AAATTA
*
26709143 GTTGATTTACGATCA
1 ATTGATTTACGATCA
26709158 CAACTTCATT
Statistics
Matches: 233, Mismatches: 41, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
131 1 0.00
132 10 0.04
133 213 0.91
134 6 0.03
135 3 0.01
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37
Consensus pattern (132 bp):
ATTGATTTACGATCATAAACAATTCATCTAGAGTTCGCTAATTTACAATCACGACTCCTCTTAAC
AATTCGTTGATTTACGATCGCAACTGATATAATCAAAACTCGCTAGTTAACAATCACATTTAAAT
TA
Found at i:26712454 original size:35 final size:35
Alignment explanation
Indices: 26712408--26712478 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
26712398 CATCTCTGGA
*
26712408 GCTTGGTAAATATGGAAAGTGATCTTCAAAGATAT
1 GCTTGGCAAATATGGAAAGTGATCTTCAAAGATAT
* *
26712443 GCTTGGCAAATATGGAAGGTGATCTTCAAATATAT
1 GCTTGGCAAATATGGAAAGTGATCTTCAAAGATAT
26712478 G
1 G
26712479 TGATCATAGA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.35, C:0.10, G:0.24, T:0.31
Consensus pattern (35 bp):
GCTTGGCAAATATGGAAAGTGATCTTCAAAGATAT
Found at i:26717006 original size:21 final size:22
Alignment explanation
Indices: 26716971--26717021 Score: 61
Period size: 21 Copynumber: 2.3 Consensus size: 22
26716961 AGGATTGTGA
26716971 ATCTTATGGCAAAA-GGTTCAAAG
1 ATCTT-TGGCAAAAGGGTT-AAAG
26716994 ATCTTTGG-AAAAGGGTTAAAG
1 ATCTTTGGCAAAAGGGTTAAAG
*
26717015 ATATTTG
1 ATCTTTG
26717022 ACAGAAAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
21 14 0.54
22 7 0.27
23 5 0.19
ACGTcount: A:0.37, C:0.08, G:0.24, T:0.31
Consensus pattern (22 bp):
ATCTTTGGCAAAAGGGTTAAAG
Found at i:26724774 original size:45 final size:45
Alignment explanation
Indices: 26724710--26724802 Score: 186
Period size: 45 Copynumber: 2.1 Consensus size: 45
26724700 CATTCAACCC
26724710 CATATCATTTCTGCACATTTCCCATCACAACCTTACTTTAGTAGT
1 CATATCATTTCTGCACATTTCCCATCACAACCTTACTTTAGTAGT
26724755 CATATCATTTCTGCACATTTCCCATCACAACCTTACTTTAGTAGT
1 CATATCATTTCTGCACATTTCCCATCACAACCTTACTTTAGTAGT
26724800 CAT
1 CAT
26724803 CCACTAAAAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.27, C:0.29, G:0.06, T:0.38
Consensus pattern (45 bp):
CATATCATTTCTGCACATTTCCCATCACAACCTTACTTTAGTAGT
Found at i:26730087 original size:23 final size:23
Alignment explanation
Indices: 26730061--26730159 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
26730051 AGTGTTATTG
26730061 ATCAGTGGTAGCTACGGCTACAT
1 ATCAGTGGTAGCTACGGCTACAT
*
26730084 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTACGGCTACAT
* *
26730107 TTCAGTGGTAGCTACGGCTACGT
1 ATCAGTGGTAGCTACGGCTACAT
*
26730130 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTACGGCTACAT
26730153 ATCAGTG
1 ATCAGTG
26730160 TGGCACTTAT
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 69 1.00
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.29
Consensus pattern (23 bp):
ATCAGTGGTAGCTACGGCTACAT
Found at i:26730133 original size:46 final size:46
Alignment explanation
Indices: 26730061--26730159 Score: 180
Period size: 46 Copynumber: 2.2 Consensus size: 46
26730051 AGTGTTATTG
26730061 ATCAGTGGTAGCTACGGCTACATATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTACGGCTACATATCAGTGGTAGCTTCGGCTACAT
* *
26730107 TTCAGTGGTAGCTACGGCTACGTATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTACGGCTACATATCAGTGGTAGCTTCGGCTACAT
26730153 ATCAGTG
1 ATCAGTG
26730160 TGGCACTTAT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 50 1.00
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
ATCAGTGGTAGCTACGGCTACATATCAGTGGTAGCTTCGGCTACAT
Found at i:26732426 original size:19 final size:20
Alignment explanation
Indices: 26732398--26732439 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
26732388 ATTTGATCCT
* *
26732398 AATTTTAAAAAT-ACATAAA
1 AATTTCAAAAATAAAATAAA
26732417 AATTTCAAAAATAAAATAAA
1 AATTTCAAAAATAAAATAAA
26732437 AAT
1 AAT
26732440 ACATTTAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.29
Consensus pattern (20 bp):
AATTTCAAAAATAAAATAAA
Found at i:26734955 original size:21 final size:20
Alignment explanation
Indices: 26734919--26734959 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
26734909 TTTTTATTTC
26734919 AAAATAAATCATAAATATATT
1 AAAATAAATCATAAAT-TATT
26734940 AAAATAAAT-ATAAAATTATT
1 AAAATAAATCAT-AAATTATT
26734960 TTTTATATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.34
Consensus pattern (20 bp):
AAAATAAATCATAAATTATT
Found at i:26739259 original size:7 final size:7
Alignment explanation
Indices: 26739247--26739294 Score: 78
Period size: 7 Copynumber: 6.9 Consensus size: 7
26739237 TCCTAAGTTC
26739247 TCGATTT
1 TCGATTT
*
26739254 TTGATTT
1 TCGATTT
*
26739261 TTGATTT
1 TCGATTT
26739268 TCGATTT
1 TCGATTT
26739275 TCGATTT
1 TCGATTT
26739282 TCGATTT
1 TCGATTT
26739289 TCGATT
1 TCGATT
26739295 GTCAATCCTC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
7 39 1.00
ACGTcount: A:0.15, C:0.10, G:0.15, T:0.60
Consensus pattern (7 bp):
TCGATTT
Found at i:26744134 original size:22 final size:24
Alignment explanation
Indices: 26744092--26744136 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 24
26744082 ATTTTTAAAA
*
26744092 AGATATATTTTTATATTTTAGATT
1 AGATATATTGTTATATTTTAGATT
26744116 AGAT-TATTGTTA-ATTTTAGAT
1 AGATATATTGTTATATTTTAGAT
26744137 ATAACTTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 9 0.45
23 7 0.35
24 4 0.20
ACGTcount: A:0.33, C:0.00, G:0.11, T:0.56
Consensus pattern (24 bp):
AGATATATTGTTATATTTTAGATT
Found at i:26744189 original size:18 final size:19
Alignment explanation
Indices: 26744142--26744189 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
26744132 TAGATATAAC
* *
26744142 TTTTAATATTATATTTCTG
1 TTTTAAGATTAGATTTCTG
*
26744161 TTTTAAAGATTAGATTTGTG
1 TTTT-AAGATTAGATTTCTG
26744181 -TTTAAGATT
1 TTTTAAGATT
26744190 TATGGATATA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 6 0.24
19 7 0.28
20 12 0.48
ACGTcount: A:0.29, C:0.02, G:0.12, T:0.56
Consensus pattern (19 bp):
TTTTAAGATTAGATTTCTG
Found at i:26745576 original size:67 final size:68
Alignment explanation
Indices: 26745494--26745720 Score: 266
Period size: 67 Copynumber: 3.4 Consensus size: 68
26745484 CCTTAAAAGA
* * * * *
26745494 GGTTACGAGGTGTAAGAGCATAGCTTGAGTATGACAACCTATAGTGTCTGCCAGTGCATTAAACA
1 GGTTACAAGGTGTAAGACCATAGCTTGACTATGACAACCTATAGAGTCTACCAGTGCATTAAACA
26745559 TGG
66 TGG
* * **
26745562 GGTTAC-ATGTGTAAGACCATAGCTTGACTATGGCAACGAATAGAGTCTACCAAGATG--TTAAA
1 GGTTACAAGGTGTAAGACCATAGCTTGACTATGACAACCTATAGAGTCTACC-AG-TGCATTAAA
26745624 CATGG
64 CATGG
* * * *
26745629 GGTTACAAGGTGTAAGCCCGTAGCTCGACTATGACAACCTATAGAGTCCACCAG-GACATTAAAC
1 GGTTACAAGGTGTAAGACCATAGCTTGACTATGACAACCTATAGAGTCTACCAGTG-CATTAAAC
26745693 ATGG
65 ATGG
*
26745697 GGTTAC-ATGTGTAAGACCATAGCT
1 GGTTACAAGGTGTAAGACCATAGCT
26745721 CAACTATGGC
Statistics
Matches: 134, Mismatches: 19, Indels: 13
0.81 0.11 0.08
Matches are distributed among these distances:
65 1 0.01
67 70 0.52
68 61 0.46
69 2 0.01
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.25
Consensus pattern (68 bp):
GGTTACAAGGTGTAAGACCATAGCTTGACTATGACAACCTATAGAGTCTACCAGTGCATTAAACA
TGG
Found at i:26745660 original size:68 final size:67
Alignment explanation
Indices: 26745550--26745733 Score: 251
Period size: 68 Copynumber: 2.7 Consensus size: 67
26745540 TCTGCCAGTG
* * *
26745550 CATTAAACATGGGGTTACATGTGTAAGACCATAGCTTGACTATGGCAACGAATAGAGTCTACCAA
1 CATTAAACATGGGGTTACATGTGTAAGACCATAGCTCGACTATGGCAACCAATAGAGTCCACCAA
26745615 GA
66 GA
** * * * * *
26745617 TGTTAAACATGGGGTTACAAGGTGTAAGCCCGTAGCTCGACTATGACAACCTATAGAGTCCACCA
1 CATTAAACATGGGGTTAC-ATGTGTAAGACCATAGCTCGACTATGGCAACCAATAGAGTCCACCA
*
26745682 GGA
65 AGA
*
26745685 CATTAAACATGGGGTTACATGTGTAAGACCATAGCTCAACTATGGCAAC
1 CATTAAACATGGGGTTACATGTGTAAGACCATAGCTCGACTATGGCAAC
26745734 ATGTTGAGTC
Statistics
Matches: 98, Mismatches: 18, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
67 42 0.43
68 56 0.57
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23
Consensus pattern (67 bp):
CATTAAACATGGGGTTACATGTGTAAGACCATAGCTCGACTATGGCAACCAATAGAGTCCACCAA
GA
Found at i:26748951 original size:42 final size:42
Alignment explanation
Indices: 26748892--26748977 Score: 120
Period size: 42 Copynumber: 2.0 Consensus size: 42
26748882 GTTTCCTCAC
* *
26748892 CCGTGTAACTTAATGAGTTGTCTCACACGCCCGTGTGCCAGG
1 CCGTGTAACTTAATGAGTTGCCACACACGCCCGTGTGCCAGG
* *
26748934 CCGTGTAACTCT-TTGAGTTGCCACACACGCCCGTGTGCTAGG
1 CCGTGTAACT-TAATGAGTTGCCACACACGCCCGTGTGCCAGG
26748976 CC
1 CC
26748978 CTGTGCTAGG
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
42 38 0.97
43 1 0.03
ACGTcount: A:0.17, C:0.31, G:0.26, T:0.26
Consensus pattern (42 bp):
CCGTGTAACTTAATGAGTTGCCACACACGCCCGTGTGCCAGG
Found at i:26774851 original size:25 final size:25
Alignment explanation
Indices: 26774810--26774878 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
26774800 ATGCTTATAC
* *
26774810 GAGCTGTA-AACGTTAAGCTCCTCT
1 GAGCTGAATAACGGTAAGCTCCTCT
*
26774834 GAGCTGAATAACGGTAAGCTCCTTT
1 GAGCTGAATAACGGTAAGCTCCTCT
*
26774859 GAGATGAATAACGGTAAGCT
1 GAGCTGAATAACGGTAAGCT
26774879 AATAAGAGTT
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
24 7 0.17
25 33 0.82
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (25 bp):
GAGCTGAATAACGGTAAGCTCCTCT
Found at i:26774891 original size:25 final size:25
Alignment explanation
Indices: 26774838--26774891 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 25
26774828 TCCTCTGAGC
** **
26774838 TGAATAACGGTAAGCTCCTTTGAGA
1 TGAATAACGGTAAGCTAATAAGAGA
*
26774863 TGAATAACGGTAAGCTAATAAGAGT
1 TGAATAACGGTAAGCTAATAAGAGA
26774888 TGAA
1 TGAA
26774892 ATCGATAACC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.39, C:0.11, G:0.24, T:0.26
Consensus pattern (25 bp):
TGAATAACGGTAAGCTAATAAGAGA
Found at i:26783460 original size:42 final size:43
Alignment explanation
Indices: 26783359--26783530 Score: 118
Period size: 43 Copynumber: 4.0 Consensus size: 43
26783349 AGCTCGTACA
* * * * * * *
26783359 ATGCCAACGTTCCAGAC-GTGGTCTTACATGTATTCAAATAACG
1 ATGCCAATGTCCCAGACAG-GGTCTTACACGAAATCATATATCG
* *
26783402 ATGCCACTTTCCCAGACAGGGTCTTACACGAAATCATATAT-G
1 ATGCCAATGTCCCAGACAGGGTCTTACACGAAATCATATATCG
* * * * *
26783444 ATGCCAATGTCCCAGACATGATCATACACGTAAATC-TCAAATCA
1 ATGCCAATGTCCCAGACAGGGTCTTACACG-AAATCAT-ATATCG
* * * *
26783488 ATGCCAAAGTCCCAGAC-GTGGTCTTATACGATATCACATATCG
1 ATGCCAATGTCCCAGACAG-GGTCTTACACGAAATCATATATCG
26783531 GAATTCCTGT
Statistics
Matches: 98, Mismatches: 25, Indels: 12
0.73 0.19 0.09
Matches are distributed among these distances:
42 27 0.28
43 46 0.47
44 25 0.26
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACAGGGTCTTACACGAAATCATATATCG
Found at i:26791424 original size:43 final size:42
Alignment explanation
Indices: 26791390--26791521 Score: 117
Period size: 42 Copynumber: 3.1 Consensus size: 42
26791380 TTCCATGTAT
* *
26791390 TCAAATAATGATGCCACTGTCCCAGACAGAGTCTTACACGAAA
1 TCAAAT-ACGATGCCAATGTCCCAGACAGAGTCTTACACGAAA
*
26791433 TCATATACGATGCCAATGTCCCAGACATG-GTCTTACACGTAAA
1 TCAAATACGATGCCAATGTCCCAGACA-GAGTCTTACACG-AAA
* * * * *
26791476 TCTCAAAT-CAATGCCAACGTCCCAAACATG-GTCTTATACGATA
1 --TCAAATACGATGCCAATGTCCCAGACA-GAGTCTTACACGAAA
26791519 TCA
1 TCA
26791522 CATATCGGAA
Statistics
Matches: 76, Mismatches: 9, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
41 3 0.04
42 29 0.38
43 11 0.14
44 28 0.37
45 5 0.07
ACGTcount: A:0.35, C:0.27, G:0.14, T:0.24
Consensus pattern (42 bp):
TCAAATACGATGCCAATGTCCCAGACAGAGTCTTACACGAAA
Found at i:26797653 original size:43 final size:43
Alignment explanation
Indices: 26797576--26797903 Score: 437
Period size: 43 Copynumber: 7.7 Consensus size: 43
26797566 TGTCCCAAAC
* ** * **
26797576 ATGGTCTTACATGGAAATCTCGTATCGATTCCAATAGCCCTCCT
1 ATGGTCTTACA-CGAAATCTCAAATCGATGCCAATAGCCCAGCT
* *
26797620 ATAGTCATACACGAAATCTCAAATCGATGCCAATAGCCCAGCT
1 ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAGCT
26797663 ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAGCT
1 ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAGCT
** *
26797706 ATGGTCTTACACGAAATCTCAAATCGATGGTAATAGCCCAACT
1 ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAGCT
* * **
26797749 ATGGTCTTACAAG-AATCTCAAATCGACGCCAATATTCCAGCT
1 ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAGCT
* * * * *
26797791 ATGGTCTTACAAG-AATCTCAAATCAACGACAATAGCCTAGCT
1 ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAGCT
26797833 ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAGCT
1 ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAGCT
*
26797876 ATGGTCTTACACG-AATATCAAATCGATG
1 ATGGTCTTACACGAAATCTCAAATCGATG
26797904 TCATATCCCA
Statistics
Matches: 252, Mismatches: 31, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
42 86 0.34
43 157 0.62
44 9 0.04
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.25
Consensus pattern (43 bp):
ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAGCT
Found at i:26797851 original size:85 final size:85
Alignment explanation
Indices: 26797576--26797903 Score: 433
Period size: 85 Copynumber: 3.8 Consensus size: 85
26797566 TGTCCCAAAC
* ** * ** * *
26797576 ATGGTCTTACATGGAAATCTCGTATCGATTCCAATAGCCCTCCTATAGTCATACACGAAATCTCA
1 ATGGTCTTACA-CGAAATCTCAAATCGATGCCAATAGCCCAGCTATGGTCTTACACG-AATCTCA
*
26797641 AATCGATGCCAATAGCCCAGCT
64 AATCGATGACAATAGCCCAGCT
26797663 ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAGCTATGGTCTTACACGAAATCTCAA
1 ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAGCTATGGTCTTACACG-AATCTCAA
** *
26797728 ATCGATGGTAATAGCCCAACT
65 ATCGATGACAATAGCCCAGCT
* * ** *
26797749 ATGGTCTTACAAG-AATCTCAAATCGACGCCAATATTCCAGCTATGGTCTTACAAGAATCTCAAA
1 ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAGCTATGGTCTTACACGAATCTCAAA
* * *
26797813 TCAACGACAATAGCCTAGCT
66 TCGATGACAATAGCCCAGCT
*
26797833 ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAGCTATGGTCTTACACGAATATCAAA
1 ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAGCTATGGTCTTACACGAATCTCAAA
26797898 TCGATG
66 TCGATG
26797904 TCATATCCCA
Statistics
Matches: 210, Mismatches: 30, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
84 35 0.17
85 88 0.42
86 76 0.36
87 11 0.05
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.25
Consensus pattern (85 bp):
ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAGCTATGGTCTTACACGAATCTCAAA
TCGATGACAATAGCCCAGCT
Found at i:26797936 original size:127 final size:128
Alignment explanation
Indices: 26797576--26797938 Score: 442
Period size: 127 Copynumber: 2.8 Consensus size: 128
26797566 TGTCCCAAAC
* ** * ** * *
26797576 ATGGTCTTACATGGAAATCTCGTATCGATTCCAATAGCCCTCCTATAGTCATACACGAAATCTCA
1 ATGGTCTTACA-CGAAATCTCAAATCGATGCCAATAGCCCAACTATGGTCTTACACG-AATCTCA
* * * * *
26797641 AATCGATGCCAATAGCCCAGCTATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAGCT
64 AATCGATGCCAATATCCCAGCTATGGTCTTACACGGAATCTCAAATCAACGACAATAGCCCAGCT
** *
26797706 ATGGTCTTACACGAAATCTCAAATCGATGGTAATAGCCCAACTATGGTCTTACAAGAATCTCAAA
1 ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAACTATGGTCTTACACGAATCTCAAA
* * * *
26797771 TCGACGCCAATATTCCAGCTATGGTCTTACA-AGAATCTCAAATCAACGACAATAGCCTAGCT
66 TCGATGCCAATATCCCAGCTATGGTCTTACACGGAATCTCAAATCAACGACAATAGCCCAGCT
* *
26797833 ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAGCTATGGTCTTACACGAATATCAAA
1 ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAACTATGGTCTTACACGAATCTCAAA
* ** * * *
26797898 TCGATGTC-ATATCCCATATATGGACTTATACGGGATCTCAA
66 TCGATGCCAATATCCCAGCTATGGTCTTACACGGAATCTCAA
26797939 GTCGATATTG
Statistics
Matches: 198, Mismatches: 34, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
126 17 0.09
127 99 0.50
128 37 0.19
129 34 0.17
130 11 0.06
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.26
Consensus pattern (128 bp):
ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAACTATGGTCTTACACGAATCTCAAA
TCGATGCCAATATCCCAGCTATGGTCTTACACGGAATCTCAAATCAACGACAATAGCCCAGCT
Found at i:26808623 original size:44 final size:45
Alignment explanation
Indices: 26808554--26809449 Score: 287
Period size: 44 Copynumber: 20.8 Consensus size: 45
26808544 CTACTGTTTT
* * *
26808554 AATCCACTCCACTGTAA-CTCTAGGGAGATAGGA-TTATCGTCTTC
1 AATCTACTCCACTGCAACCTC-AGGGAGATAAGACTTATCGTCTTC
* * * *
26808598 AATCTGCTCCACTGCAACCACAGGGAGATAAGACTT-GCTTCTTC
1 AATCTACTCCACTGCAACCTCAGGGAGATAAGACTTATCGTCTTC
* * * * **
26808642 GATCTACTCCGCTGCAACCTCAGGGAGATAACACCTGAT-GTGAT-
1 AATCTACTCCACTGCAACCTCAGGGAGATAAGA-CTTATCGTCTTC
** * * **
26808686 -AT-T-CTCTGCTGCAACCTTAGAGAGATAAGA-TCTATTAT-TTC
1 AATCTACTCCACTGCAACCTCAGGGAGATAAGACT-TATCGTCTTC
* * *
26808727 AATCCACTCCACTGCAACTTCAGGGAGATAGGA-TTATCAG-CTTC
1 AATCTACTCCACTGCAACCTCAGGGAGATAAGACTTATC-GTCTTC
* * * * *
26808771 CATCTGCTCCACTGCAACCTCAGGGAGATAAGACCT-GCTTCTTC
1 AATCTACTCCACTGCAACCTCAGGGAGATAAGACTTATCGTCTTC
* * * *
26808815 GATCTACTCCGCTGCAACCTCAGGGAGATAAAACCTGAT-G---T-
1 AATCTACTCCACTGCAACCTCAGGGAGATAAGA-CTTATCGTCTTC
* *** * * **
26808856 GATCTACTTTGCTGCAACTTCAGAGAGATAAGA-TCTATTAT-TTC
1 AATCTACTCCACTGCAACCTCAGGGAGATAAGACT-TATCGTCTTC
* * *
26808900 AATC--C-GCACTGCAACTTCAGGGAGATAGGA-TTATCAG-CTTC
1 AATCTACTCCACTGCAACCTCAGGGAGATAAGACTTATC-GTCTTC
* * * * * * * *
26808941 CATCTGCTTCACTGCAACCTTAAGGAGATAAGACCTGT-TTCTTC
1 AATCTACTCCACTGCAACCTCAGGGAGATAAGACTTATCGTCTTC
* * *
26808985 GATCTACTCCGCTGCAACCTCAGGGAGATAAGACCTAAT-G---T-
1 AATCTACTCCACTGCAACCTCAGGGAGATAAGA-CTTATCGTCTTC
* *** * * * **
26809026 GATCTACTCTGTTGCAACTTCAGAGAAATAAGA-TCTATTAT-TTC
1 AATCTACTCCACTGCAACCTCAGGGAGATAAGACT-TATCGTCTTC
** * * * * *
26809070 AATCCGCTCTACTACAACTTCAGAGAGATAGGA-TTATCAG-CTTC
1 AATCTACTCCACTGCAACCTCAGGGAGATAAGACTTATC-GTCTTC
* * *
26809114 CATCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGAT-G---T-
1 AATCTACTCCACTGCAACCTCAGGGAGATAAGA-CTTATCGTCTTC
* ** * * **
26809155 GATCTACTCTGCTGCAACTTCAGAGAGATAAGA-TCTATTAT-TTC
1 AATCTACTCCACTGCAACCTCAGGGAGATAAGACT-TATCGTCTTC
* * * *
26809199 AATCCACTCCACTACAACTTCAGGGAGATAGGA-TTATCAG-CTTC
1 AATCTACTCCACTGCAACCTCAGGGAGATAAGACTTATC-GTCTTC
* * * * * *
26809243 CATCTGCTCCACTGCAACCTCAGGGAGATAAGACCT-GCTTCTTT
1 AATCTACTCCACTGCAACCTCAGGGAGATAAGACTTATCGTCTTC
* ** * * * *
26809287 GATCTACTCTGCTGTAATCTCAGGGAGATAAGA-TT-T-GACGT-
1 AATCTACTCCACTGCAACCTCAGGGAGATAAGACTTATCGTCTTC
* ** * * **
26809328 GATCTACTCTGCTGCAACTTCAGAGAGATAAGA-TCTATTAT-TTC
1 AATCTACTCCACTGCAACCTCAGGGAGATAAGACT-TATCGTCTTC
* * * *
26809372 AATCCACTCCATTGCAACTTCAGGGAGATAGGA-TTATCAG-CTTC
1 AATCTACTCCACTGCAACCTCAGGGAGATAAGACTTATC-GTCTTC
* * * *
26809416 CATTTGCTCTACTGCAACCTCAGGGAGATAAGAC
1 AATCTACTCCACTGCAACCTCAGGGAGATAAGAC
26809450 CTGATGTGAT
Statistics
Matches: 628, Mismatches: 170, Indels: 107
0.69 0.19 0.12
Matches are distributed among these distances:
39 4 0.01
40 12 0.02
41 164 0.26
42 10 0.02
43 21 0.03
44 399 0.64
45 15 0.02
46 3 0.00
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.28
Consensus pattern (45 bp):
AATCTACTCCACTGCAACCTCAGGGAGATAAGACTTATCGTCTTC
Found at i:26808728 original size:129 final size:130
Alignment explanation
Indices: 26808595--26809537 Score: 517
Period size: 129 Copynumber: 7.3 Consensus size: 130
26808585 GATTATCGTC
* * *
26808595 TTCAATCTGCTCCACTGCAACCACAGGGAGATAAGACTTGCTTCTTCGATCTACTCCGCTGCAAC
1 TTCAATCTACTCCACTGCAACCTCAGGGAGATAAGACTTGCTTCTTCGATCTACTCTGCTGCAAC
* * *
26808660 CTCAGGGAGATAACACCTGATGTGATATTCTCTGCTGCAACCTT-AGAGAGATAAGATCTATTAT
66 CTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAACCTTCAGAGAGATAAGATCTATTAT
* * * * ** * * **
26808724 TTCAATCCACTCCACTGCAACTTCAGGGAGATAGGA-TTATCAGCTTCCATCTGCTCCACTGCAA
1 TTCAATCTACTCCACTGCAACCTCAGGGAGATAAGACTT-GCTTCTTCGATCTACTCTGCTGCAA
* * * * * *
26808788 CCTCAGGGAGATAAGACCTGCTTCTTCGATCTACTCCGCTGCAACC-TCAGGGAGATAA-AAC-C
65 CCTCAGGGAGATAAGACCTG-AT-GT-GATCTACTCTGCTGCAACCTTCAGAGAGATAAGATCTA
*
26808850 TGAT
127 TTAT
* * *** * * * * *
26808854 GT-GATCTACTTTGCTGCAACTTCAGAGAGATAAGATCTAT--TAT-TTCAATC--CGC-ACTGC
1 TTCAATCTACTCCACTGCAACCTCAGGGAGATAAGA-CT-TGCT-TCTTCGATCTACTCTGCTGC
* * * * * * *
26808912 AACTTCAGGGAGATAGGA--TTATCAGCTTCCATCTGCT-TCACTGCAACCTTAAG-GAGATAAG
63 AACCTCAGGGAGATAAGACCTGAT--G--T-GATCTACTCT-GCTGCAACCTTCAGAGAGATAAG
* *
26808973 ACCTGTT-T
122 ATCTATTAT
* * ** *
26808981 CTTCGATCTACTCCGCTGCAACCTCAGGGAGATAAGAC---CTAATGT-GATCTACTCTGTTGCA
1 -TTCAATCTACTCCACTGCAACCTCAGGGAGATAAGACTTGCTTCT-TCGATCTACTCTGCTGCA
* * * * * * * ** * * *
26809042 ACTTCAGAGAAATAAGATCTATTATTTCAATCCGCTCTACTACAA-CTTCAGAGAGATAGGAT-T
64 ACCTCAGGGAGATAAGA-C-CTGATGT-GATCTACTCTGCTGCAACCTTCAGAGAGATAAGATCT
* *
26809105 ATCAGC
126 ATTA-T
* * * * *
26809111 TTCCATCTGCTCCACTGCAACCTCAGGGAGATAAGACCTG-AT-GT-GATCTACTCTGCTGCAAC
1 TTCAATCTACTCCACTGCAACCTCAGGGAGATAAGACTTGCTTCTTCGATCTACTCTGCTGCAAC
* * * * * * * ** * * *
26809173 TTCAGAGAGATAAGATCTATTATTTCAATCCACTCCACTACAA-CTTCAGGGAGATAGGAT-TAT
66 CTCAGGGAGATAAGA-C-CTGATGT-GATCTACTCTGCTGCAACCTTCAGAGAGATAAGATCTAT
* *
26809236 CAGC
128 TA-T
* * * * * *
26809240 TTCCATCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGCTTCTTTGATCTACTCTGCTGTAAT
1 TTCAATCTACTCCACTGCAACCTCAGGGAGATAAGACTTGCTTCTTCGATCTACTCTGCTGCAAC
** *
26809305 CTCAGGGAGATAAGATTTGACGTGATCTACTCTGCTGCAA-CTTCAGAGAGATAAGATCTATTAT
66 CTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAACCTTCAGAGAGATAAGATCTATTAT
* * * * * ** * * * *
26809369 TTCAATCCACTCCATTGCAACTTCAGGGAGATAGGA-TTATCAGCTTCCATTTGCTCTACTGCAA
1 TTCAATCTACTCCACTGCAACCTCAGGGAGATAAGACTT-GCTTCTTCGATCTACTCTGCTGCAA
26809433 CCTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAA-CTTCAGAGAGATAAGATCTATTA
65 CCTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAACCTTCAGAGAGATAAGATCTATTA
26809497 T
130 T
** * *
26809498 TTCAATCCGCTCCACTGCAACTTCAGGGAGATAGGACTTG
1 TTCAATCTACTCCACTGCAACCTCAGGGAGATAAGACTTG
26809538 GTGCGATCTC
Statistics
Matches: 649, Mismatches: 124, Indels: 82
0.76 0.15 0.10
Matches are distributed among these distances:
123 1 0.00
124 1 0.00
126 49 0.08
127 9 0.01
128 15 0.02
129 493 0.76
130 16 0.02
131 6 0.01
132 55 0.08
133 4 0.01
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (130 bp):
TTCAATCTACTCCACTGCAACCTCAGGGAGATAAGACTTGCTTCTTCGATCTACTCTGCTGCAAC
CTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAACCTTCAGAGAGATAAGATCTATTAT
Found at i:26808760 original size:173 final size:173
Alignment explanation
Indices: 26808471--26809187 Score: 1029
Period size: 173 Copynumber: 4.2 Consensus size: 173
26808461 CCATTCTCAG
* * * * * *
26808471 TCTACTCCTCTGAAACCTTAGGGAGATAAGACCTGATGTGATCTACTCTACTGCAAGTTTAGAGA
1 TCTACTCCGCTGCAACCTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAACTTCAGAGA
* * * * *
26808536 GATAAGATCTACTGTTTTAATCCACTCCACTGTAAC-TCTAGGGAGATAGGATTATC-GTCTTCA
66 GATAAGATCTATTATTTCAATCCACTCCACTGCAACTTC-AGGGAGATAGGATTATCAG-CTTCC
* *
26808599 ATCTGCTCCACTGCAACCACAGGGAGATAAGACTTGCTTCTTCGA
129 ATCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGCTTCTTCGA
* * *
26808644 TCTACTCCGCTGCAACCTCAGGGAGATAACACCTGATGTGATATTCTCTGCTGCAACCTT-AGAG
1 TCTACTCCGCTGCAACCTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAA-CTTCAGAG
26808708 AGATAAGATCTATTATTTCAATCCACTCCACTGCAACTTCAGGGAGATAGGATTATCAGCTTCCA
65 AGATAAGATCTATTATTTCAATCCACTCCACTGCAACTTCAGGGAGATAGGATTATCAGCTTCCA
26808773 TCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGCTTCTTCGA
130 TCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGCTTCTTCGA
* *
26808817 TCTACTCCGCTGCAACCTCAGGGAGATAAAACCTGATGTGATCTACTTTGCTGCAACTTCAGAGA
1 TCTACTCCGCTGCAACCTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAACTTCAGAGA
*
26808882 GATAAGATCTATTATTTCAAT-C-C-GCACTGCAACTTCAGGGAGATAGGATTATCAGCTTCCAT
66 GATAAGATCTATTATTTCAATCCACTCCACTGCAACTTCAGGGAGATAGGATTATCAGCTTCCAT
* * * *
26808944 CTGCTTCACTGCAACCTTAAGGAGATAAGACCTGTTTCTTCGA
131 CTGCTCCACTGCAACCTCAGGGAGATAAGACCTGCTTCTTCGA
* *
26808987 TCTACTCCGCTGCAACCTCAGGGAGATAAGACCTAATGTGATCTACTCTGTTGCAACTTCAGAGA
1 TCTACTCCGCTGCAACCTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAACTTCAGAGA
* * * * *
26809052 AATAAGATCTATTATTTCAATCCGCTCTACTACAACTTCAGAGAGATAGGATTATCAGCTTCCAT
66 GATAAGATCTATTATTTCAATCCACTCCACTGCAACTTCAGGGAGATAGGATTATCAGCTTCCAT
* *
26809117 CTGCTCCACTGCAACCTCAGGGAGATAAGACCTG-AT-GT-GA
131 CTGCTCCACTGCAACCTCAGGGAGATAAGACCTGCTTCTTCGA
* * *
26809157 TCTACTCTGCTGCAACTTCAGAGAGATAAGA
1 TCTACTCCGCTGCAACCTCAGGGAGATAAGA
26809188 TCTATTATTT
Statistics
Matches: 496, Mismatches: 41, Indels: 17
0.90 0.07 0.03
Matches are distributed among these distances:
170 188 0.38
171 3 0.01
172 6 0.01
173 294 0.59
174 5 0.01
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.28
Consensus pattern (173 bp):
TCTACTCCGCTGCAACCTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAACTTCAGAGA
GATAAGATCTATTATTTCAATCCACTCCACTGCAACTTCAGGGAGATAGGATTATCAGCTTCCAT
CTGCTCCACTGCAACCTCAGGGAGATAAGACCTGCTTCTTCGA
Found at i:26809219 original size:173 final size:176
Alignment explanation
Indices: 26808471--26809445 Score: 881
Period size: 173 Copynumber: 5.7 Consensus size: 176
26808461 CCATTCTCAG
* * * * * * * * *
26808471 TCTACTCCTCTGAAACCTTAGGGAGATAAGACC--TGATGT-GATCTACTCTACTGCAAGTTTAG
1 TCTACTCCGCTGCAACCTCAGGGAGATAAGACCTATTATTTCAATCTACTCCACTGCAACTTCAG
* * * * *
26808533 AGAGATAAGATCTACTGTTTTAATCCACTCCACTGTAAC-TCTAGGGAGATAGGATTATC-GTCT
66 AGAGATAAGATCTATTATTTCAATCCGCTCCACTGCAACTTC-AGGGAGATAGGATTATCAG-CT
* * *
26808596 TCAATCTGCTCCACTGCAACCACAGGGAGATAAGACTTGCTTCTTCGA
129 TCCATCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGCTTCTTCGA
* * * * **
26808644 TCTACTCCGCTGCAACCTCAGGGAGATAACACC--TGATGTGATAT-T-CTCTGCTGCAACCTT-
1 TCTACTCCGCTGCAACCTCAGGGAGATAAGACCTATTATTTCA-ATCTACTCCACTGCAA-CTTC
*
26808704 AGAGAGATAAGATCTATTATTTCAATCCACTCCACTGCAACTTCAGGGAGATAGGATTATCAGCT
64 AGAGAGATAAGATCTATTATTTCAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCAGCT
26808769 TCCATCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGCTTCTTCGA
129 TCCATCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGCTTCTTCGA
* * * * ***
26808817 TCTACTCCGCTGCAACCTCAGGGAGATAAAACC--TGATGT-GATCTACTTTGCTGCAACTTCAG
1 TCTACTCCGCTGCAACCTCAGGGAGATAAGACCTATTATTTCAATCTACTCCACTGCAACTTCAG
26808879 AGAGATAAGATCTATTATTTCAATCCG---CACTGCAACTTCAGGGAGATAGGATTATCAGCTTC
66 AGAGATAAGATCTATTATTTCAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCAGCTTC
* * * *
26808941 CATCTGCTTCACTGCAACCTTAAGGAGATAAGACCTGTTTCTTCGA
131 CATCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGCTTCTTCGA
* * ***
26808987 TCTACTCCGCTGCAACCTCAGGGAGATAAGACCTA--ATGT-GATCTACTCTGTTGCAACTTCAG
1 TCTACTCCGCTGCAACCTCAGGGAGATAAGACCTATTATTTCAATCTACTCCACTGCAACTTCAG
* * * *
26809049 AGAAATAAGATCTATTATTTCAATCCGCTCTACTACAACTTCAGAGAGATAGGATTATCAGCTTC
66 AGAGATAAGATCTATTATTTCAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCAGCTTC
* *
26809114 CATCTGCTCCACTGCAACCTCAGGGAGATAAGACCTG-AT-GT-GA
131 CATCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGCTTCTTCGA
* * * * * *
26809157 TCTACTCTGCTGCAACTTCAGAGAGATAAGATCTATTATTTCAATCCACTCCACTACAACTTCAG
1 TCTACTCCGCTGCAACCTCAGGGAGATAAGACCTATTATTTCAATCTACTCCACTGCAACTTCAG
* * * * * * * * * * **
26809222 GGAGATAGGAT-TATCAGCTTCCATCTGCTCCACTGCAACCTCAGGGAGATAAGACCT-GCTTCT
66 AGAGATAAGATCTATTA-TTTCAATCCGCTCCACTGCAACTTCAGGGAGATAGGA-TTATCAGCT
** * ** * * ** * *
26809285 TTGATCTACTCTGCTGTAATCTCAGGGAGATAAGATTTG--ACGT-GA
129 TCCATCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGCTTCTTCGA
* * * * * *
26809330 TCTACTCTGCTGCAACTTCAGAGAGATAAGATCTATTATTTCAATCCACTCCATTGCAACTTCAG
1 TCTACTCCGCTGCAACCTCAGGGAGATAAGACCTATTATTTCAATCTACTCCACTGCAACTTCAG
* * * * * ** * *
26809395 GGAGATAGGAT-TATCAGCTTCCATTTGCTCTACTGCAACCTCAGGGAGATA
66 AGAGATAAGATCTATTA-TTTCAATCCGCTCCACTGCAACTTCAGGGAGATA
26809446 AGACCTGATG
Statistics
Matches: 708, Mismatches: 75, Indels: 38
0.86 0.09 0.05
Matches are distributed among these distances:
170 193 0.27
171 3 0.00
172 12 0.02
173 491 0.69
174 7 0.01
175 2 0.00
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (176 bp):
TCTACTCCGCTGCAACCTCAGGGAGATAAGACCTATTATTTCAATCTACTCCACTGCAACTTCAG
AGAGATAAGATCTATTATTTCAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCAGCTTC
CATCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGCTTCTTCGA
Found at i:26809293 original size:302 final size:301
Alignment explanation
Indices: 26808811--26809533 Score: 1162
Period size: 302 Copynumber: 2.4 Consensus size: 301
26808801 AGACCTGCTT
* * * * *
26808811 CTTCGATCTACTCCGCTGCAACCTCAGGGAGATAAAACCTGATGTGATCTACTTTGCTGCAACTT
1 CTTCCATCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAACTT
*
26808876 CAGAGAGATAAGATCTATTATTTCAAT-CC-GCACTGCAACTTCAGGGAGATAGGATTATCAGCT
66 CAGAGAGATAAGATCTATTATTTCAATCCCTCCACTGCAACTTCAGGGAGATAGGATTATCAGCT
* * *
26808939 TCCATCTGCTTCACTGCAACCTTAAGGAGATAAGACCTGTTTCTTCGATCTACTCCGCTGCAACC
131 TCCATCTGCTCCACTGCAACCTCAAGGAGATAAGACCTGCTTCTTCGATCTACTCCGCTGCAACC
* *
26809004 TCAGGGAGATAAGACCTAATGTGATCTACTCTGTTGCAACTTCAGAGAAATAAGATCTATTATTT
196 TCAGGGAGATAAGACCTAACGTGATCTACTCTGCTGCAACTTCAGAGAAATAAGATCTATTATTT
* *
26809069 CAATCCGCTCTACTACAACTTCAGAGAGATAGGATTATCAG
261 CAATCCACTCCACTACAACTTCAGAGAGATAGGATTATCAG
26809110 CTTCCATCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAACTT
1 CTTCCATCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAACTT
*
26809175 CAGAGAGATAAGATCTATTATTTCAATCCACTCCACTACAACTTCAGGGAGATAGGATTATCAGC
66 CAGAGAGATAAGATCTATTATTTCAATCC-CTCCACTGCAACTTCAGGGAGATAGGATTATCAGC
* * * * *
26809240 TTCCATCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGCTTCTTTGATCTACTCTGCTGTAAT
130 TTCCATCTGCTCCACTGCAACCTCAAGGAGATAAGACCTGCTTCTTCGATCTACTCCGCTGCAAC
** * *
26809305 CTCAGGGAGATAAGATTTGACGTGATCTACTCTGCTGCAACTTCAGAGAGATAAGATCTATTATT
195 CTCAGGGAGATAAGACCTAACGTGATCTACTCTGCTGCAACTTCAGAGAAATAAGATCTATTATT
* * *
26809370 TCAATCCACTCCATTGCAACTTCAGGGAGATAGGATTATCAG
260 TCAATCCACTCCACTACAACTTCAGAGAGATAGGATTATCAG
* *
26809412 CTTCCATTTGCTCTACTGCAACCTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAACTT
1 CTTCCATCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAACTT
26809477 CAGAGAGATAAGATCTATTATTTCAATCCGCTCCACTGCAACTTCAGGGAGATAGGA
66 CAGAGAGATAAGATCTATTATTTCAATCC-CTCCACTGCAACTTCAGGGAGATAGGA
26809534 CTTGGTGCGA
Statistics
Matches: 391, Mismatches: 30, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
299 87 0.22
300 1 0.00
301 1 0.00
302 302 0.77
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (301 bp):
CTTCCATCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAACTT
CAGAGAGATAAGATCTATTATTTCAATCCCTCCACTGCAACTTCAGGGAGATAGGATTATCAGCT
TCCATCTGCTCCACTGCAACCTCAAGGAGATAAGACCTGCTTCTTCGATCTACTCCGCTGCAACC
TCAGGGAGATAAGACCTAACGTGATCTACTCTGCTGCAACTTCAGAGAAATAAGATCTATTATTT
CAATCCACTCCACTACAACTTCAGAGAGATAGGATTATCAG
Found at i:26809446 original size:173 final size:169
Alignment explanation
Indices: 26809125--26809492 Score: 583
Period size: 173 Copynumber: 2.1 Consensus size: 169
26809115 ATCTGCTCCA
* *
26809125 CTGCAACCTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAACTTCAGAGAGATAAGATC
1 CTGCAA-CTCAGGGAGATAAGATCTGACGTGATCTACTCTGCTGCAACTTCAGAGAGATAAGATC
26809190 TATTATTTCAATCCACTCCACTACAACTTCAGGGAGATAGGATTATCAGCTTCCATCTGCTCCAC
65 TATTATTTCAATCCACTCCACTACAACTTCAGGGAGATAGGATTATCAGCTTCCATCTGCTCCAC
* *
26809255 TGCAACCTCAGGGAGATAAGACCTGCTTCTTTGATCTACTCTG
130 TGCAACCTCAGGGAGATAAGACCTG---ATGTGATCTACTCTG
* *
26809298 CTGTAATCTCAGGGAGATAAGATTTGACGTGATCTACTCTGCTGCAACTTCAGAGAGATAAGATC
1 CTGCAA-CTCAGGGAGATAAGATCTGACGTGATCTACTCTGCTGCAACTTCAGAGAGATAAGATC
* * * *
26809363 TATTATTTCAATCCACTCCATTGCAACTTCAGGGAGATAGGATTATCAGCTTCCATTTGCTCTAC
65 TATTATTTCAATCCACTCCACTACAACTTCAGGGAGATAGGATTATCAGCTTCCATCTGCTCCAC
26809428 TGCAACCTCAGGGAGATAAGACCTGATGTGATCTACTCTG
130 TGCAACCTCAGGGAGATAAGACCTGATGTGATCTACTCTG
*
26809468 CTGCAACTTCAGAGAGATAAGATCT
1 CTGCAAC-TCAGGGAGATAAGATCT
26809493 ATTATTTCAA
Statistics
Matches: 180, Mismatches: 14, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
169 1 0.01
170 33 0.18
173 146 0.81
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (169 bp):
CTGCAACTCAGGGAGATAAGATCTGACGTGATCTACTCTGCTGCAACTTCAGAGAGATAAGATCT
ATTATTTCAATCCACTCCACTACAACTTCAGGGAGATAGGATTATCAGCTTCCATCTGCTCCACT
GCAACCTCAGGGAGATAAGACCTGATGTGATCTACTCTG
Found at i:26814332 original size:8 final size:8
Alignment explanation
Indices: 26814319--26814343 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
26814309 ACTTGCATGG
26814319 AAAGAATA
1 AAAGAATA
26814327 AAAGAATA
1 AAAGAATA
26814335 AAAGAATA
1 AAAGAATA
26814343 A
1 A
26814344 TTGCCCAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.12, T:0.12
Consensus pattern (8 bp):
AAAGAATA
Found at i:26817424 original size:8 final size:8
Alignment explanation
Indices: 26817411--26817447 Score: 74
Period size: 8 Copynumber: 4.6 Consensus size: 8
26817401 AATAATGATT
26817411 TTTTAGAA
1 TTTTAGAA
26817419 TTTTAGAA
1 TTTTAGAA
26817427 TTTTAGAA
1 TTTTAGAA
26817435 TTTTAGAA
1 TTTTAGAA
26817443 TTTTA
1 TTTTA
26817448 ATATTTTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.35, C:0.00, G:0.11, T:0.54
Consensus pattern (8 bp):
TTTTAGAA
Found at i:26821494 original size:23 final size:23
Alignment explanation
Indices: 26821464--26821508 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
26821454 CAATAATACC
* * *
26821464 TTTATGGCGTATTCTGTCTGGCA
1 TTTATGGCATAATCTGTATGGCA
26821487 TTTATGGCATAATCTGTATGGC
1 TTTATGGCATAATCTGTATGGC
26821509 TTATGTGGCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.18, C:0.16, G:0.24, T:0.42
Consensus pattern (23 bp):
TTTATGGCATAATCTGTATGGCA
Found at i:26821537 original size:21 final size:21
Alignment explanation
Indices: 26821513--26821573 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 21
26821503 TATGGCTTAT
*
26821513 GTGGCATTCT-ATTTGGCCTTC
1 GTGGCATTCTGA-TTAGCCTTC
*
26821534 GTGGCATTGTGATTAGCCTTC
1 GTGGCATTCTGATTAGCCTTC
*
26821555 GTGGCATTTTG-TTAGCCTT
1 GTGGCATTCTGATTAGCCTT
26821574 TATGGTGTAC
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
20 8 0.22
21 27 0.75
22 1 0.03
ACGTcount: A:0.11, C:0.20, G:0.26, T:0.43
Consensus pattern (21 bp):
GTGGCATTCTGATTAGCCTTC
Found at i:26821571 original size:20 final size:21
Alignment explanation
Indices: 26821528--26821573 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
26821518 ATTCTATTTG
26821528 GCCTTCGTGGCATTGTGATTA
1 GCCTTCGTGGCATTGTGATTA
*
26821549 GCCTTCGTGGCATTTTG-TTA
1 GCCTTCGTGGCATTGTGATTA
26821569 GCCTT
1 GCCTT
26821574 TATGGTGTAC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 8 0.33
21 16 0.67
ACGTcount: A:0.11, C:0.22, G:0.26, T:0.41
Consensus pattern (21 bp):
GCCTTCGTGGCATTGTGATTA
Found at i:26826154 original size:37 final size:37
Alignment explanation
Indices: 26826111--26826184 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
26826101 AATTACCTAT
26826111 AAATTTGGAGATGGCCAAATGGTTGAAAGCTTGAAGC
1 AAATTTGGAGATGGCCAAATGGTTGAAAGCTTGAAGC
26826148 AAATTTGGAGATGGCCAAATGGTTGAAAGCTTGAAGC
1 AAATTTGGAGATGGCCAAATGGTTGAAAGCTTGAAGC
26826185 TTTCTCTTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.35, C:0.11, G:0.30, T:0.24
Consensus pattern (37 bp):
AAATTTGGAGATGGCCAAATGGTTGAAAGCTTGAAGC
Found at i:26830816 original size:159 final size:162
Alignment explanation
Indices: 26830525--26830841 Score: 415
Period size: 165 Copynumber: 2.0 Consensus size: 162
26830515 GAAAAATATG
* * *
26830525 TATATTCCTTCTATAAAGATTTGATCCTTTTGCTATCCAACCTTTTAAAATTATTGTTTTATCTC
1 TATATTCCTTCCATAAAGATTTGATCCTTTTGCTATCCAACCTTTTAAAATTATTATTTTATCTA
* * * * *
26830590 TATTATAATAATCATTCAAGTGAATTAATGTCACAAGTTAATCGGGTAACAATTTAATTGAAAAA
66 TATTATAATAA-CATT--A-TAAATGAATGTCACAAGTTAATCGAGTAACAATTCAATTAAAAAA
*
26830655 TGGTTAAAATCTTA-TTTTAATTAAATATTCAAATT
127 TGGTTAAAATCTTATTTTTAATCAAATATTCAAATT
* * * * * * *
26830690 TATATTCTTTCCATAAATATTTTATTCTTTTGTTGTCCATCCTTTTAAAATTATTATTTTATCTA
1 TATATTCCTTCCATAAAGATTTGATCCTTTTGCTATCCAACCTTTTAAAATTATTATTTTATCTA
* *
26830755 TGTTATAATAA-ATT-TAAATGAGTGTCACAAGTTAATCGAGTAACAATTCAATTAAAAAATGGT
66 TATTATAATAACATTATAAATGAATGTCACAAGTTAATCGAGTAACAATTCAATTAAAAAATGGT
26830818 TAAAATCTTATTTTTAATCAAATA
131 TAAAATCTTATTTTTAATCAAATA
26830842 ATATAGGGAT
Statistics
Matches: 133, Mismatches: 18, Indels: 7
0.84 0.11 0.04
Matches are distributed among these distances:
159 53 0.40
160 12 0.09
163 3 0.02
165 65 0.49
ACGTcount: A:0.37, C:0.11, G:0.08, T:0.44
Consensus pattern (162 bp):
TATATTCCTTCCATAAAGATTTGATCCTTTTGCTATCCAACCTTTTAAAATTATTATTTTATCTA
TATTATAATAACATTATAAATGAATGTCACAAGTTAATCGAGTAACAATTCAATTAAAAAATGGT
TAAAATCTTATTTTTAATCAAATATTCAAATT
Found at i:26831115 original size:29 final size:30
Alignment explanation
Indices: 26831071--26831128 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 30
26831061 AAATTGAATC
26831071 AAATCAAAATATTATGTATAAAATTACACA
1 AAATCAAAATATTATGTATAAAATTACACA
*
26831101 AAATCAAAAT-TTATGTATAATATTACAC
1 AAATCAAAATATTATGTATAAAATTACAC
26831129 GTTAAACCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
29 17 0.63
30 10 0.37
ACGTcount: A:0.53, C:0.10, G:0.03, T:0.33
Consensus pattern (30 bp):
AAATCAAAATATTATGTATAAAATTACACA
Found at i:26831492 original size:30 final size:31
Alignment explanation
Indices: 26831456--26831514 Score: 93
Period size: 30 Copynumber: 1.9 Consensus size: 31
26831446 GTATTAAAAG
26831456 AAATCATATATTAAAAGAAATAAC-AATTTT
1 AAATCATATATTAAAAGAAATAACTAATTTT
* *
26831486 AAATCATGTATTAAAATAAATAACTAATT
1 AAATCATATATTAAAAGAAATAACTAATT
26831515 ACTTAAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.56, C:0.07, G:0.03, T:0.34
Consensus pattern (31 bp):
AAATCATATATTAAAAGAAATAACTAATTTT
Found at i:26833013 original size:34 final size:33
Alignment explanation
Indices: 26832888--26833003 Score: 133
Period size: 34 Copynumber: 3.4 Consensus size: 33
26832878 TTTTAAAAAA
* *
26832888 TAAATCAGGGTTTACAATTTTTTAAAAAATTAAT
1 TAAATTAGGGTTTAC-AGTTTTTAAAAAATTAAT
* ** *
26832922 TAAATTAGGTTTTAGGGATTTTAAATAAATTAAT
1 TAAATTAGGGTTTACAGTTTTTAAA-AAATTAAT
* *
26832956 TAAATTAAGGTTTAGAGTTTTTAAGAAAATTAAT
1 TAAATTAGGGTTTACAGTTTTTAA-AAAATTAAT
26832990 TAAATTAGGGTTTA
1 TAAATTAGGGTTTA
26833004 ATTTTTTTAA
Statistics
Matches: 69, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
33 7 0.10
34 61 0.88
35 1 0.01
ACGTcount: A:0.42, C:0.02, G:0.14, T:0.42
Consensus pattern (33 bp):
TAAATTAGGGTTTACAGTTTTTAAAAAATTAAT
Found at i:26833331 original size:126 final size:124
Alignment explanation
Indices: 26833104--26833748 Score: 781
Period size: 126 Copynumber: 5.1 Consensus size: 124
26833094 ATTTTATTTT
* * * * *
26833104 TTTTTCTACAGTAGTTTCAGAAAAATTAATTTTGAGAAGATGGTTCTGAAAAGATAATGTCAAAA
1 TTTTTCTACAGTAG-TTCATAAAAA-AAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAA
* * * *
26833169 ACACTACAAACAGGATGCACTGTCAACAAAATTACTAAAAAAAGCTCCCACGTGGACGCTC
64 ACGCTTCAAGCAGGATGCACTGTCAACAAAATTACTGAAAAAAGCTCCCACGTGGACGCTC
* * *
26833230 TCTTTCTACAGTAGTTCATAAAAAACACATTTTGAGAAGAAGGTTCTGAAAATATAGTGTCAAAA
1 TTTTTCTACAGTAGTTCATAAAAAA-A-ATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAA
* * * *
26833295 ACGCTTCAAGCAGGATGCACTGTTAGCAAAATTACTAAAAAAAGCTCCCACGTAGACGCTC
64 ACGCTTCAAGCAGGATGCACTGTCAACAAAATTACTGAAAAAAGCTCCCACGTGGACGCTC
* *
26833356 TCTTTCTACAGTAGTTCCTAAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAA
1 TTTTTCTACAGTAGTTCAT-AAAAAA-AATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAA
** * *
26833421 ACGCTTCAAGCAGGATGCACTGTCAGTAAAATTACTGAAAAAAGCTTCCACGTGGACGCTT
64 ACGCTTCAAGCAGGATGCACTGTCAACAAAATTACTGAAAAAAGCTCCCACGTGGACGCTC
* * * * *
26833482 TTTTTCTATAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGTTTCTAAAAAAATAGTGTTAAAA
1 TTTTTCTACAGTAGTTCAT-AAAAAA-AATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAA
* * * * * * *
26833547 ATGTTTCAAGAAAGATGCACTATCAACAAAATTACTGAAAAAAGCTCCCATGTGGAAGCTC
64 ACGCTTCAAGCAGGATGCACTGTCAACAAAATTACTGAAAAAAGCTCCCACGTGGACGCTC
* ** * * *
26833608 TTTTTCTACGGTAGTT-ACTGAAAAATGATTTTGAGAATACGATTCTG-AAAAATAGTGTAAAAA
1 TTTTTCTACAGTAGTTCA-T-AAAAAAAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAA
* * * * *
26833671 ACACTCCAAGTAGGATGCACTGTCAACAAAATTACTGAAAAAATCTCCCACGTGAACGCTC
64 ACGCTTCAAGCAGGATGCACTGTCAACAAAATTACTGAAAAAAGCTCCCACGTGGACGCTC
26833732 TTTTTCTACAGTAGTTC
1 TTTTTCTACAGTAGTTC
26833749 TTGCTTGGCC
Statistics
Matches: 454, Mismatches: 60, Indels: 11
0.86 0.11 0.02
Matches are distributed among these distances:
124 80 0.18
125 27 0.06
126 340 0.75
127 7 0.02
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.28
Consensus pattern (124 bp):
TTTTTCTACAGTAGTTCATAAAAAAAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAAAC
GCTTCAAGCAGGATGCACTGTCAACAAAATTACTGAAAAAAGCTCCCACGTGGACGCTC
Found at i:26841559 original size:15 final size:15
Alignment explanation
Indices: 26841541--26841575 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
26841531 TTCTGCATGA
26841541 TATTACTGTATCTGT
1 TATTACTGTATCTGT
*
26841556 TATTTCTGTATCTGT
1 TATTACTGTATCTGT
*
26841571 GATTA
1 TATTA
26841576 AGGTGGGTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.20, C:0.11, G:0.14, T:0.54
Consensus pattern (15 bp):
TATTACTGTATCTGT
Found at i:26849634 original size:24 final size:24
Alignment explanation
Indices: 26849576--26849634 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 24
26849566 TTCTAATTAA
**
26849576 ATTTTATAAATATTTATTATTTAT
1 ATTTTATAAATATTTAAAATTTAT
* *
26849600 -TGCTTAAAAATATTTAAAATTTAT
1 AT-TTTATAAATATTTAAAATTTAT
26849624 ATTTTATAAAT
1 ATTTTATAAAT
26849635 TAAATTATTA
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
23 1 0.04
24 25 0.93
25 1 0.04
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (24 bp):
ATTTTATAAATATTTAAAATTTAT
Found at i:26856273 original size:20 final size:23
Alignment explanation
Indices: 26856250--26856304 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 23
26856240 TTTTTTAATA
26856250 ATTTTTGAATTTTTAA-A-A-AT
1 ATTTTTGAATTTTTAATATATAT
**
26856270 ATTTTTTTATTTTTAATATATAT
1 ATTTTTGAATTTTTAATATATAT
26856293 ATTTTTAGAATT
1 ATTTTT-GAATT
26856305 AAGTCTAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
20 14 0.52
21 1 0.04
22 1 0.04
23 8 0.30
24 3 0.11
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.62
Consensus pattern (23 bp):
ATTTTTGAATTTTTAATATATAT
Found at i:26856275 original size:21 final size:23
Alignment explanation
Indices: 26856245--26856304 Score: 63
Period size: 21 Copynumber: 2.7 Consensus size: 23
26856235 AATCATTTTT
*
26856245 TAATAATTTTTGAATTTTTAA-A
1 TAATATTTTTTGAATTTTTAATA
*
26856267 -AATATTTTTT-TATTTTTAATA
1 TAATATTTTTTGAATTTTTAATA
*
26856288 TATATATTTTTAGAATT
1 TA-ATATTTTTTGAATT
26856305 AAGTCTAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
20 8 0.27
21 10 0.33
22 1 0.03
23 8 0.27
24 3 0.10
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (23 bp):
TAATATTTTTTGAATTTTTAATA
Found at i:26856290 original size:19 final size:19
Alignment explanation
Indices: 26856241--26856290 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 19
26856231 TATAAATCAT
26856241 TTTTTAATA-ATTTTTGAA
1 TTTTTAATATATTTTTGAA
* **
26856259 TTTTTAAAAATATTTTTTTA
1 TTTTT-AATATATTTTTGAA
26856279 TTTTTAATATAT
1 TTTTTAATATAT
26856291 ATATTTTTAG
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
18 5 0.19
19 9 0.35
20 12 0.46
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (19 bp):
TTTTTAATATATTTTTGAA
Found at i:26857823 original size:22 final size:22
Alignment explanation
Indices: 26857797--26857838 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
26857787 ATTTTAAATA
26857797 CATTTATTT-TATTATATCATGT
1 CATTTATTTAT-TTATATCATGT
26857819 CATTTATTTATTTATATCAT
1 CATTTATTTATTTATATCAT
26857839 TTTAAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 18 0.95
23 1 0.05
ACGTcount: A:0.29, C:0.10, G:0.02, T:0.60
Consensus pattern (22 bp):
CATTTATTTATTTATATCATGT
Found at i:26869886 original size:44 final size:45
Alignment explanation
Indices: 26869808--26869912 Score: 124
Period size: 44 Copynumber: 2.4 Consensus size: 45
26869798 ATAGCAAACC
* * ** *
26869808 TTATCTCCCCGAAGTTACAGTGGAGGAGGTTGAAGTTA-C-AAGTA
1 TTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGATAGCGAA-TA
*
26869852 TTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGATAGCGAATC
1 TTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGATAGCGAATA
*
26869897 TTATTTCCCTGAAGTT
1 TTATCTCCCTGAAGTT
26869913 GTAGTGGAAC
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
44 33 0.63
45 17 0.33
46 2 0.04
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.30
Consensus pattern (45 bp):
TTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGATAGCGAATA
Found at i:26870000 original size:40 final size:40
Alignment explanation
Indices: 26869945--26870106 Score: 128
Period size: 40 Copynumber: 3.8 Consensus size: 40
26869935 TAAAATACAG
*
26869945 ATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCATATCA
1 ATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATCATATCA
* * * * *
26869985 ATCTTATCTCCCTAAATTTGTAGTGGAATAGGCTAAAGTTATAAATTACA
1 ATCTTATCTCCCTAAAGTTGCAGT---AGA-GC-AGA-TCAT--A-T-CA
* *
26870035 GATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATATCA
1 -ATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATCATATCA
*
26870076 ATCTTATCTCCCTGAAA-TTGCAGTGGAGCAG
1 ATCTTATCTCCCT-AAAGTTGCAGTAGAGCAG
26870107 GTTGGAGTTA
Statistics
Matches: 94, Mismatches: 16, Indels: 24
0.70 0.12 0.18
Matches are distributed among these distances:
40 46 0.49
41 4 0.04
42 1 0.01
43 3 0.03
44 2 0.02
45 5 0.05
46 5 0.05
47 2 0.02
48 3 0.03
49 1 0.01
50 2 0.02
51 20 0.21
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (40 bp):
ATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATCATATCA
Found at i:26870012 original size:91 final size:90
Alignment explanation
Indices: 26869893--26870102 Score: 303
Period size: 91 Copynumber: 2.3 Consensus size: 90
26869883 GAAGATAGCG
* * *
26869893 AATCTTATTTCCCTGAAGTTGTAGTGGAACAGATTAAAACTATAAAATACAGATCTTATCTCTCT
1 AATCTTATCTCCCT-AAATTGTAGTGGAACAGACTAAAACTATAAAATACAGATCTTATCTCTCT
26869958 AAAGTTGCAGTAGAGCAGATCATATC
65 AAAGTTGCAGTAGAGCAGATCATATC
* * ** *
26869984 AATCTTATCTCCCTAAATTTGTAGTGGAATAGGCTAAAGTTATAAATTACAGATCTTATCTCTCT
1 AATCTTATCTCCCTAAA-TTGTAGTGGAACAGACTAAAACTATAAAATACAGATCTTATCTCTCT
*
26870049 GAAGTTGCAGTAGAGCAGATCATATC
65 AAAGTTGCAGTAGAGCAGATCATATC
*
26870075 AATCTTATCTCCCTGAAATTGCAGTGGA
1 AATCTTATCTCCCT-AAATTGTAGTGGA
26870103 GCAGGTTGGA
Statistics
Matches: 107, Mismatches: 10, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
90 2 0.02
91 102 0.95
92 3 0.03
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Consensus pattern (90 bp):
AATCTTATCTCCCTAAATTGTAGTGGAACAGACTAAAACTATAAAATACAGATCTTATCTCTCTA
AAGTTGCAGTAGAGCAGATCATATC
Found at i:26870141 original size:44 final size:44
Alignment explanation
Indices: 26870085--26870201 Score: 128
Period size: 44 Copynumber: 2.7 Consensus size: 44
26870075 AATCTTATCT
* * *
26870085 CCCTGAAATTGCAGTGGAGCAGGTTGGAGTTACAAAGCTTA-TA
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAAGCTTATTA
* * * *
26870128 CCCTTGAAGTTGCAGTGGAGCAGATTGAAGTTATAGATCTTATTT
1 CCC-TGAAGTTGCAGTGGAGCAGATTGAAGTTACAAAGCTTATTA
* * *
26870173 CCCTAAAGTTGCAGTGGAGTAGATCGAAG
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAG
26870202 CAACAATTCT
Statistics
Matches: 62, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
43 3 0.05
44 55 0.89
45 4 0.06
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.28
Consensus pattern (44 bp):
CCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAAGCTTATTA
Found at i:26873041 original size:19 final size:19
Alignment explanation
Indices: 26873006--26873058 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
26872996 ATAAAATATT
*
26873006 AAGAGTATTACTTAATGTTTA
1 AAGATTATTA-TTAATG-TTA
26873027 AA-ATTATTATTAATGTTA
1 AAGATTATTATTAATGTTA
*
26873045 AAGTTTATTATTAA
1 AAGATTATTATTAA
26873059 AATAAATTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
18 5 0.17
19 16 0.55
20 6 0.21
21 2 0.07
ACGTcount: A:0.42, C:0.02, G:0.09, T:0.47
Consensus pattern (19 bp):
AAGATTATTATTAATGTTA
Found at i:26873252 original size:14 final size:15
Alignment explanation
Indices: 26873235--26873264 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
26873225 TATAATTCAC
26873235 TACATATTTAT-TTT
1 TACATATTTATGTTT
26873249 TACATATTTATGTTT
1 TACATATTTATGTTT
26873264 T
1 T
26873265 TCAACCACGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.27, C:0.07, G:0.03, T:0.63
Consensus pattern (15 bp):
TACATATTTATGTTT
Done.