Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 81 of 284
Found at i:27163000 original size:50 final size:50
Alignment explanation
Indices: 27162874--27163171 Score: 262
Period size: 50 Copynumber: 5.9 Consensus size: 50
27162864 CATTTGGGTA
* *
27162874 AAGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGAGA-T
* * * *
27162928 ATGACAGGTCCCATGTAAGACCATGTTTAGGACATGGCGTTGGCACCGAGAT
1 A--AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
*
27162980 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
* ** * * * *
27163030 GAGAGGTCCCCCGTAGGACCATGTCTGGGACATGGCATGGGCACCAATAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
* ** * * * * *
27163080 GAGAACTCCCATGTAAGGCCATATATGGGATATGGCATTGGCAGTAC-AGGA-
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA--CCGA-GAT
* * *
27163131 AACA--TCCCATGTAAGACCATGTCTAGGACATGGCTTTGGCA
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
27163172 TGTTATTATC
Statistics
Matches: 202, Mismatches: 37, Indels: 15
0.80 0.15 0.06
Matches are distributed among these distances:
49 31 0.15
50 121 0.60
51 3 0.01
52 4 0.02
53 4 0.02
54 1 0.00
55 1 0.00
56 37 0.18
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (50 bp):
AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
Found at i:27169015 original size:16 final size:16
Alignment explanation
Indices: 27168996--27169026 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
27168986 AAGCTATTTT
*
27168996 ATTATTTATTTTTAAA
1 ATTATTAATTTTTAAA
27169012 ATTATTAATTTTTAA
1 ATTATTAATTTTTAA
27169027 TGTCACATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
ATTATTAATTTTTAAA
Found at i:27169106 original size:6 final size:6
Alignment explanation
Indices: 27169095--27169159 Score: 62
Period size: 6 Copynumber: 10.5 Consensus size: 6
27169085 ATTTTTAATT
* *
27169095 ATTATA ATTATA ATTATA ATTATA ATTTATT ATTCA-A ATTATTA AATATA
1 ATTATA ATTATA ATTATA ATTATA A-TTATA ATT-ATA ATTA-TA ATTATA
27169145 ATT-TA ATTAATA ATT
1 ATTATA ATT-ATA ATT
27169160 CAAATATAAT
Statistics
Matches: 49, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
5 6 0.12
6 28 0.57
7 15 0.31
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.51
Consensus pattern (6 bp):
ATTATA
Found at i:27169135 original size:31 final size:30
Alignment explanation
Indices: 27169089--27169169 Score: 94
Period size: 31 Copynumber: 2.7 Consensus size: 30
27169079 GAATATATTT
27169089 TTAATTATT-ATAATTATAATTATAATTATAA
1 TTAATTATTCA-AATTATAATTATAATT-TAA
* *
27169120 TTTATTATTCAAATTATTAAATATAATTTAA
1 TTAATTATTCAAATTA-TAATTATAATTTAA
*
27169151 TTAATAATTCAAA-TATAAT
1 TTAATTATTCAAATTATAAT
27169170 AAGACGAAAG
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
29 3 0.07
30 2 0.05
31 27 0.63
32 11 0.26
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.49
Consensus pattern (30 bp):
TTAATTATTCAAATTATAATTATAATTTAA
Found at i:27187691 original size:18 final size:18
Alignment explanation
Indices: 27187651--27187693 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
27187641 AATTAGAATG
*
27187651 TAAAAATTAAACTAAAAA
1 TAAAAATTAAAATAAAAA
*
27187669 CAAAAATATAAAAT-AAAA
1 TAAAAAT-TAAAATAAAAA
27187687 TAAAAAT
1 TAAAAAT
27187694 GGATAAATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 16 0.76
19 5 0.24
ACGTcount: A:0.74, C:0.05, G:0.00, T:0.21
Consensus pattern (18 bp):
TAAAAATTAAAATAAAAA
Found at i:27206128 original size:135 final size:135
Alignment explanation
Indices: 27205886--27206155 Score: 540
Period size: 135 Copynumber: 2.0 Consensus size: 135
27205876 GTTATCTGCA
27205886 GAGTTTTTAGATTTGTGTTATTAAATTGTTTCAAACCTGACACGTCCCTGTTACTTCACACGAAT
1 GAGTTTTTAGATTTGTGTTATTAAATTGTTTCAAACCTGACACGTCCCTGTTACTTCACACGAAT
27205951 ACTAAGAAACCTTTTGTAAATAAGGATCAGTAAAATGCGTATTTACTAAGTAAAGGATTCTGAAA
66 ACTAAGAAACCTTTTGTAAATAAGGATCAGTAAAATGCGTATTTACTAAGTAAAGGATTCTGAAA
27206016 TGACC
131 TGACC
27206021 GAGTTTTTAGATTTGTGTTATTAAATTGTTTCAAACCTGACACGTCCCTGTTACTTCACACGAAT
1 GAGTTTTTAGATTTGTGTTATTAAATTGTTTCAAACCTGACACGTCCCTGTTACTTCACACGAAT
27206086 ACTAAGAAACCTTTTGTAAATAAGGATCAGTAAAATGCGTATTTACTAAGTAAAGGATTCTGAAA
66 ACTAAGAAACCTTTTGTAAATAAGGATCAGTAAAATGCGTATTTACTAAGTAAAGGATTCTGAAA
27206151 TGACC
131 TGACC
27206156 TAATGTGGTT
Statistics
Matches: 135, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
135 135 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (135 bp):
GAGTTTTTAGATTTGTGTTATTAAATTGTTTCAAACCTGACACGTCCCTGTTACTTCACACGAAT
ACTAAGAAACCTTTTGTAAATAAGGATCAGTAAAATGCGTATTTACTAAGTAAAGGATTCTGAAA
TGACC
Found at i:27206574 original size:26 final size:26
Alignment explanation
Indices: 27206538--27206589 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
27206528 GTTGCACAAA
27206538 CCTACGTGTTACACATATCATCCATT
1 CCTACGTGTTACACATATCATCCATT
27206564 CCTACGTGTTACACATATCATCCATT
1 CCTACGTGTTACACATATCATCCATT
27206590 ATATGTTGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.31, G:0.08, T:0.35
Consensus pattern (26 bp):
CCTACGTGTTACACATATCATCCATT
Found at i:27206903 original size:33 final size:35
Alignment explanation
Indices: 27206866--27206933 Score: 95
Period size: 34 Copynumber: 2.0 Consensus size: 35
27206856 CCATTTTTGA
* *
27206866 CACTG-TACTGAGAAGGGCTAAGGCTCAA-ACTGT
1 CACTGATACTGAAAAGGGCTAAGGCCCAAGACTGT
*
27206899 CACTGATACTGAAAAGGGCTTAGGCCCAAGACTGT
1 CACTGATACTGAAAAGGGCTAAGGCCCAAGACTGT
27206934 TCAACTGTGC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
33 5 0.17
34 20 0.67
35 5 0.17
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.21
Consensus pattern (35 bp):
CACTGATACTGAAAAGGGCTAAGGCCCAAGACTGT
Found at i:27208537 original size:5 final size:5
Alignment explanation
Indices: 27208527--27208555 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
27208517 TCATATGTAC
27208527 ACATA ACATA ACATA ACATA ACATA ACAT
1 ACATA ACATA ACATA ACATA ACATA ACAT
27208556 TATAAACATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.59, C:0.21, G:0.00, T:0.21
Consensus pattern (5 bp):
ACATA
Found at i:27209253 original size:12 final size:12
Alignment explanation
Indices: 27209236--27209265 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
27209226 CCTCACACGC
27209236 CCGTGTGCTAGG
1 CCGTGTGCTAGG
27209248 CCGTGTGCTAGG
1 CCGTGTGCTAGG
*
27209260 CTGTGT
1 CCGTGT
27209266 AGCTTCTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.23, G:0.40, T:0.30
Consensus pattern (12 bp):
CCGTGTGCTAGG
Found at i:27214995 original size:18 final size:18
Alignment explanation
Indices: 27214972--27215026 Score: 110
Period size: 18 Copynumber: 3.1 Consensus size: 18
27214962 TAATTTGGAG
27214972 AAAGAATTATGCTAGGTT
1 AAAGAATTATGCTAGGTT
27214990 AAAGAATTATGCTAGGTT
1 AAAGAATTATGCTAGGTT
27215008 AAAGAATTATGCTAGGTT
1 AAAGAATTATGCTAGGTT
27215026 A
1 A
27215027 TAACTTATGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 37 1.00
ACGTcount: A:0.40, C:0.05, G:0.22, T:0.33
Consensus pattern (18 bp):
AAAGAATTATGCTAGGTT
Found at i:27230293 original size:18 final size:18
Alignment explanation
Indices: 27230270--27230362 Score: 159
Period size: 18 Copynumber: 5.2 Consensus size: 18
27230260 CCCAACTACT
*
27230270 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
*
27230288 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
27230306 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
*
27230324 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
27230342 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
27230360 GTA
1 GTA
27230363 AACGGTCGTA
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 70 1.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:27230322 original size:36 final size:36
Alignment explanation
Indices: 27230270--27230362 Score: 177
Period size: 36 Copynumber: 2.6 Consensus size: 36
27230260 CCCAACTACT
*
27230270 GTATACGTGAACAGTACCGTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
27230306 GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
27230342 GTATACGTGAATAGTACCGTA
1 GTATACGTGAATAGTACCGTA
27230363 AACGGTCGTA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 56 1.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (36 bp):
GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
Found at i:27233120 original size:22 final size:22
Alignment explanation
Indices: 27233072--27233168 Score: 65
Period size: 22 Copynumber: 4.4 Consensus size: 22
27233062 TTTATGAAAG
* *
27233072 GATAAATAA-ATTTAAATATTAA
1 GATAAATAATATTTATAT-TTAT
* *
27233094 AATAAATAATATTTATTTTTAT
1 GATAAATAATATTTATATTTAT
*
27233116 GATAATTAAATGATATT-TATTTAT
1 GATAAAT-AAT-AT-TTATATTTAT
* *
27233140 TAT-AATAATATTTATCTTTAT
1 GATAAATAATATTTATATTTAT
*
27233161 GAAAAATA
1 GATAAATA
27233169 TTAAAAATAA
Statistics
Matches: 57, Mismatches: 12, Indels: 12
0.70 0.15 0.15
Matches are distributed among these distances:
20 2 0.04
21 9 0.16
22 23 0.40
23 11 0.19
24 10 0.18
25 2 0.04
ACGTcount: A:0.48, C:0.01, G:0.04, T:0.46
Consensus pattern (22 bp):
GATAAATAATATTTATATTTAT
Found at i:27233125 original size:26 final size:27
Alignment explanation
Indices: 27233096--27233148 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 27
27233086 AATATTAAAA
*
27233096 TAAATAATATTTATTT-TTATGATAAT
1 TAAATAATATTTATTTATTATAATAAT
*
27233122 TAAATGATATTTATTTATTATAATAAT
1 TAAATAATATTTATTTATTATAATAAT
27233149 ATTTATCTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 15 0.62
27 9 0.38
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (27 bp):
TAAATAATATTTATTTATTATAATAAT
Found at i:27233168 original size:19 final size:19
Alignment explanation
Indices: 27233128--27233170 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
27233118 TAATTAAATG
* *
27233128 ATATTTATTTATTATAATA
1 ATATTTATCTATTATAAAA
27233147 ATATTTATCT-TTATGAAAA
1 ATATTTATCTATTAT-AAAA
27233166 ATATT
1 ATATT
27233171 AAAAATAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 4 0.19
19 17 0.81
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.53
Consensus pattern (19 bp):
ATATTTATCTATTATAAAA
Found at i:27235232 original size:13 final size:13
Alignment explanation
Indices: 27235214--27235285 Score: 58
Period size: 13 Copynumber: 5.3 Consensus size: 13
27235204 AACATGAAAG
27235214 TAAAAATAAAAAA
1 TAAAAATAAAAAA
27235227 TAAAAAGTAAAAATA
1 TAAAAA-TAAAAA-A
* *
27235242 AAGAAAATAAATAA
1 TA-AAAATAAAAAA
27235256 T-AAAATAAAGAAA
1 TAAAAATAAA-AAA
*
27235269 -ATAAATAAATAAA
1 TAAAAATAAA-AAA
27235282 TAAA
1 TAAA
27235286 TAAAACTTGG
Statistics
Matches: 46, Mismatches: 7, Indels: 11
0.72 0.11 0.17
Matches are distributed among these distances:
12 8 0.17
13 18 0.39
14 9 0.20
15 7 0.15
16 4 0.09
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.18
Consensus pattern (13 bp):
TAAAAATAAAAAA
Found at i:27235235 original size:20 final size:20
Alignment explanation
Indices: 27235210--27235264 Score: 69
Period size: 20 Copynumber: 2.7 Consensus size: 20
27235200 TATTAACATG
27235210 AAAGTAAAAATAAAAAATAA
1 AAAGTAAAAATAAAAAATAA
27235230 AAAGTAAAAATAAAGAAAATAA
1 AAAGTAAAAAT-AA-AAAATAA
27235252 ATAA-T-AAAATAAA
1 A-AAGTAAAAATAAA
27235265 GAAAATAAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
19 1 0.03
20 13 0.41
21 7 0.22
22 9 0.28
23 2 0.06
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.16
Consensus pattern (20 bp):
AAAGTAAAAATAAAAAATAA
Found at i:27235248 original size:29 final size:29
Alignment explanation
Indices: 27235215--27235290 Score: 84
Period size: 29 Copynumber: 2.6 Consensus size: 29
27235205 ACATGAAAGT
*
27235215 AAAAATAAAAAATAAAA-AGTA-AAAATAA
1 AAAAATAAAAAATAAAATA-AAGAAAATAA
*
27235243 AGAAAATAAATAATAAAATAAAGAAAATAA
1 A-AAAATAAAAAATAAAATAAAGAAAATAA
*
27235273 ATAAATAAATAAATAAAA
1 AAAAATAAA-AAATAAAA
27235291 CTTGGGTTGC
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
28 1 0.03
29 23 0.57
30 16 0.40
ACGTcount: A:0.79, C:0.00, G:0.04, T:0.17
Consensus pattern (29 bp):
AAAAATAAAAAATAAAATAAAGAAAATAA
Found at i:27235255 original size:4 final size:4
Alignment explanation
Indices: 27235217--27235289 Score: 57
Period size: 4 Copynumber: 18.8 Consensus size: 4
27235207 ATGAAAGTAA
* *
27235217 AAAT AAA- AAAT AAA- AAGT -AA- AAAT AAAGA AAAT AAAT -AAT AAAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA-T AAAT AAAT AAAT -AAAT
*
27235262 AAAGA AAAT AAAT AAAT AAAT AAAT AAA
1 AAA-T AAAT AAAT AAAT AAAT AAAT AAA
27235290 ACTTGGGTTG
Statistics
Matches: 55, Mismatches: 6, Indels: 16
0.71 0.08 0.21
Matches are distributed among these distances:
3 11 0.20
4 35 0.64
5 9 0.16
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.18
Consensus pattern (4 bp):
AAAT
Found at i:27237200 original size:25 final size:25
Alignment explanation
Indices: 27237152--27237200 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
27237142 CATAATTGAA
* * *
27237152 ATGAAATGGATTGATTTTGTATATT
1 ATGAAATAGATTGATTATGAATATT
*
27237177 ATGAAATATATTGATTATGAATAT
1 ATGAAATAGATTGATTATGAATAT
27237201 GTGTATTGAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45
Consensus pattern (25 bp):
ATGAAATAGATTGATTATGAATATT
Found at i:27240001 original size:39 final size:39
Alignment explanation
Indices: 27239939--27240017 Score: 113
Period size: 39 Copynumber: 2.0 Consensus size: 39
27239929 TAGGAAACTC
* ** *
27239939 ATCCCTTATAAGAGTGTTGTCATAGGGTGTTTTTAACCT
1 ATCCCTTATAAGAGAGTCATCATAGGGTGTTTGTAACCT
*
27239978 ATCCTTTATAAGAGAGTCATCATAGGGTGTTTGTAACCT
1 ATCCCTTATAAGAGAGTCATCATAGGGTGTTTGTAACCT
27240017 A
1 A
27240018 CTCAAGTGGT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.27, C:0.15, G:0.20, T:0.38
Consensus pattern (39 bp):
ATCCCTTATAAGAGAGTCATCATAGGGTGTTTGTAACCT
Found at i:27249739 original size:12 final size:12
Alignment explanation
Indices: 27249722--27249746 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
27249712 ATCATTTCTA
27249722 TTCATTTAGTTC
1 TTCATTTAGTTC
27249734 TTCATTTAGTTC
1 TTCATTTAGTTC
27249746 T
1 T
27249747 GCATGCAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.16, G:0.08, T:0.60
Consensus pattern (12 bp):
TTCATTTAGTTC
Found at i:27255564 original size:17 final size:16
Alignment explanation
Indices: 27255530--27255574 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 16
27255520 TTGGCAACTT
*
27255530 GTAAGCTCTCAAGTTTG
1 GTAAGCTCGC-AGTTTG
27255547 GTAAGCTCGCAGTCTTG
1 GTAAGCTCGCAGT-TTG
*
27255564 GTGAGCTCGCA
1 GTAAGCTCGCA
27255575 CAATTTGGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 3 0.12
17 22 0.88
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (16 bp):
GTAAGCTCGCAGTTTG
Found at i:27261540 original size:12 final size:12
Alignment explanation
Indices: 27261506--27261553 Score: 62
Period size: 12 Copynumber: 3.9 Consensus size: 12
27261496 GGCCTCTCAT
27261506 TTTTCTTTTTTC
1 TTTTCTTTTTTC
*
27261518 -GTTCTTCTTTTC
1 TTTTCTT-TTTTC
27261530 TTTTCTTTTTTC
1 TTTTCTTTTTTC
27261542 TTTTCATTTTTT
1 TTTTC-TTTTTT
27261554 TCAAGTGAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
11 5 0.16
12 15 0.48
13 11 0.35
ACGTcount: A:0.02, C:0.17, G:0.02, T:0.79
Consensus pattern (12 bp):
TTTTCTTTTTTC
Found at i:27262014 original size:25 final size:23
Alignment explanation
Indices: 27261981--27262027 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 23
27261971 CGGTAGAGGG
*
27261981 TTTTTTTTATTTTTTTGTTTTTTA
1 TTTTTTTTA-TTTTGTGTTTTTTA
27262005 TTTTCTTTTATTTTGTGTTTTTT
1 TTTT-TTTTATTTTGTGTTTTTT
27262028 TGTATTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 16 0.76
25 5 0.24
ACGTcount: A:0.06, C:0.02, G:0.06, T:0.85
Consensus pattern (23 bp):
TTTTTTTTATTTTGTGTTTTTTA
Found at i:27262028 original size:25 final size:24
Alignment explanation
Indices: 27261981--27262038 Score: 71
Period size: 26 Copynumber: 2.3 Consensus size: 24
27261971 CGGTAGAGGG
*
27261981 TTTTTTTTATTTTTTTGTTTTTTA
1 TTTTTTTTATTTTTGTGTTTTTTA
*
27262005 TTTTCTTTTATTTTGTGTTTTTTTGTA
1 TTTT-TTTTATTTT-TGTGTTTTT-TA
27262032 TTTTTTT
1 TTTTTTT
27262039 ACTATACTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 4 0.14
25 9 0.31
26 10 0.34
27 6 0.21
ACGTcount: A:0.07, C:0.02, G:0.07, T:0.84
Consensus pattern (24 bp):
TTTTTTTTATTTTTGTGTTTTTTA
Found at i:27262039 original size:25 final size:24
Alignment explanation
Indices: 27261981--27262038 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 24
27261971 CGGTAGAGGG
27261981 TTTTTTTTATTTTTTTGTTTTTTA
1 TTTTTTTTATTTTTTTGTTTTTTA
27262005 TTTTCTTTTATTTTGTGTT-TTTTTGTA
1 TTTT-TTTTATTTT-T-TTGTTTTT-TA
27262032 TTTTTTT
1 TTTTTTT
27262039 ACTATACTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
24 4 0.13
25 9 0.30
26 9 0.30
27 8 0.27
ACGTcount: A:0.07, C:0.02, G:0.07, T:0.84
Consensus pattern (24 bp):
TTTTTTTTATTTTTTTGTTTTTTA
Found at i:27266476 original size:14 final size:15
Alignment explanation
Indices: 27266457--27266485 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
27266447 AAATACGATC
27266457 CTTGTATAAA-AAAA
1 CTTGTATAAATAAAA
27266471 CTTGTATAAATAAAA
1 CTTGTATAAATAAAA
27266486 TTAGTCGTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.55, C:0.07, G:0.07, T:0.31
Consensus pattern (15 bp):
CTTGTATAAATAAAA
Found at i:27267106 original size:3 final size:3
Alignment explanation
Indices: 27267091--27267170 Score: 54
Period size: 3 Copynumber: 25.7 Consensus size: 3
27267081 TGAATGAGTA
* * *
27267091 AAT AAT TAT AAT AAT AAGGT AAGT AAT AAT AAG AA- ATAC AAT AAT AAT
1 AAT AAT AAT AAT AAT AA--T AA-T AAT AAT AAT AAT A-AT AAT AAT AAT
* * * *
27267139 AAT AAA AAT AAT AAT AGT AAA AAT AAT GAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
27267171 CACTATTAAA
Statistics
Matches: 61, Mismatches: 12, Indels: 8
0.75 0.15 0.10
Matches are distributed among these distances:
2 1 0.02
3 52 0.85
4 5 0.08
5 3 0.05
ACGTcount: A:0.64, C:0.01, G:0.07, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:27267148 original size:15 final size:15
Alignment explanation
Indices: 27267130--27267170 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
27267120 TAAGAAATAC
27267130 AATAATAATAATAAA
1 AATAATAATAATAAA
*
27267145 AATAATAATAGTAAA
1 AATAATAATAATAAA
*
27267160 AATAATGATAA
1 AATAATAATAA
27267171 CACTATTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (15 bp):
AATAATAATAATAAA
Found at i:27271051 original size:17 final size:18
Alignment explanation
Indices: 27271012--27271053 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
27271002 TTTCAAATGT
27271012 ATTTTTTGATTTCACTTA
1 ATTTTTTGATTTCACTTA
* * *
27271030 TTTTTTTG-TTTGATTTA
1 ATTTTTTGATTTCACTTA
27271047 ATTTTTT
1 ATTTTTT
27271054 TAAAAGAAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.17, C:0.05, G:0.07, T:0.71
Consensus pattern (18 bp):
ATTTTTTGATTTCACTTA
Found at i:27271526 original size:31 final size:32
Alignment explanation
Indices: 27271463--27271527 Score: 105
Period size: 32 Copynumber: 2.1 Consensus size: 32
27271453 GGCAAATTAC
*
27271463 AAGAGTAATTGAATCTTAATAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
*
27271495 AAGAGTAATTGAATCCTAAT-AAAACTTTTTA
1 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
27271526 AA
1 AA
27271528 ATTATCTAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
31 12 0.39
32 19 0.61
ACGTcount: A:0.48, C:0.09, G:0.09, T:0.34
Consensus pattern (32 bp):
AAGAGTAATTGAATCCTAATAAAAACTCTTTA
Found at i:27276221 original size:207 final size:207
Alignment explanation
Indices: 27275866--27276280 Score: 803
Period size: 207 Copynumber: 2.0 Consensus size: 207
27275856 GATGTTGGAG
27275866 TCTTTGATGGAGTTCTCGATAATAGTATGGTGGAACAAACCGTTTTCGCAAGATGCGCTTCATTT
1 TCTTTGATGGAGTTCTCGATAATAGTATGGTGGAACAAACCGTTTTCGCAAGATGCGCTTCATTT
* *
27275931 CAACCCAAGTAGTAACAGGTTGCTCTCTATAAAGAATCCTGCTTTTACATAATTGATTCCACCAT
66 CAACCCAAGTAGTAACAGGCTGCTCTCTATAAAGAATCCTACTTTTACATAATTGATTCCACCAT
27275996 GTTAGTGCATAATTAATGAACTCAGCGACAGCGTATGTTACCTTTTTCTCATCAGAGTAATTGTA
131 GTTAGTGCATAATTAATGAACTCAGCGACAGCGTATGTTACCTTTTTCTCATCAGAGTAATTGTA
27276061 ACAAGCAAAGAC
196 ACAAGCAAAGAC
27276073 TCTTTGATGGAGTTCTCGATAATAGTATGGTGGAACAAACCGTTTTCGCAAGATGCGCTTCATTT
1 TCTTTGATGGAGTTCTCGATAATAGTATGGTGGAACAAACCGTTTTCGCAAGATGCGCTTCATTT
*
27276138 CAACCCAAGTAGTAATAGGCTGCTCTCTATAAAGAATCCTACTTTTACATAATTGATTCCACCAT
66 CAACCCAAGTAGTAACAGGCTGCTCTCTATAAAGAATCCTACTTTTACATAATTGATTCCACCAT
27276203 GTTAGTGCATAATTAATGAACTCAGCGACAGCGTATGTTACCTTTTTCTCATCAGAGTAATTGTA
131 GTTAGTGCATAATTAATGAACTCAGCGACAGCGTATGTTACCTTTTTCTCATCAGAGTAATTGTA
27276268 ACAAGCAAAGAC
196 ACAAGCAAAGAC
27276280 T
1 T
27276281 GCTTCCATCT
Statistics
Matches: 205, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
207 205 1.00
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.32
Consensus pattern (207 bp):
TCTTTGATGGAGTTCTCGATAATAGTATGGTGGAACAAACCGTTTTCGCAAGATGCGCTTCATTT
CAACCCAAGTAGTAACAGGCTGCTCTCTATAAAGAATCCTACTTTTACATAATTGATTCCACCAT
GTTAGTGCATAATTAATGAACTCAGCGACAGCGTATGTTACCTTTTTCTCATCAGAGTAATTGTA
ACAAGCAAAGAC
Found at i:27277933 original size:31 final size:32
Alignment explanation
Indices: 27277874--27277938 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
27277864 GGCAAATTAC
27277874 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
*
27277906 AAGAGTACTTGAATCCTAAT-AAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
27277937 AA
1 AA
27277939 ATTATCTAAG
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 13 0.41
32 19 0.59
ACGTcount: A:0.46, C:0.14, G:0.09, T:0.31
Consensus pattern (32 bp):
AAGAGTAATTGAATCCTAATAAAAACTCTTTA
Found at i:27279060 original size:58 final size:58
Alignment explanation
Indices: 27278987--27279097 Score: 136
Period size: 58 Copynumber: 1.9 Consensus size: 58
27278977 TGATTATTTC
* * *
27278987 TATTTGATTTATTTA-TCATTCTCTTACT-TTCAAAATATTTAAATTTAATATTAGGTAT
1 TATTTGATCTATTTATTCATT-TCTTACTCTT-AAAATATTTAAACTTAACATTAGGTAT
* * *
27279045 TATTTTATCTATTTATTTATTTTTTACTCTTAAAATATTTAAACTTAACATTA
1 TATTTGATCTATTTATTCATTTCTTACTCTTAAAATATTTAAACTTAACATTA
27279098 TGTAAACATA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
58 39 0.87
59 6 0.13
ACGTcount: A:0.33, C:0.09, G:0.03, T:0.55
Consensus pattern (58 bp):
TATTTGATCTATTTATTCATTTCTTACTCTTAAAATATTTAAACTTAACATTAGGTAT
Found at i:27279142 original size:3 final size:3
Alignment explanation
Indices: 27279134--27279189 Score: 103
Period size: 3 Copynumber: 18.3 Consensus size: 3
27279124 TTCTATCTTC
27279134 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
27279182 TAT GTAT T
1 TAT -TAT T
27279190 TATTCACAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 49 0.94
4 3 0.06
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:27279259 original size:13 final size:13
Alignment explanation
Indices: 27279241--27279265 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27279231 GAACTGTATC
27279241 ATTTATTTATTTT
1 ATTTATTTATTTT
27279254 ATTTATTTATTT
1 ATTTATTTATTT
27279266 AGTTTCAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (13 bp):
ATTTATTTATTTT
Found at i:27281840 original size:24 final size:24
Alignment explanation
Indices: 27281813--27281859 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
27281803 TTTATATTTT
27281813 TAATACTTTTTAATTTTTTAAAAA
1 TAATACTTTTTAATTTTTTAAAAA
**
27281837 TAATTTTTTTTAATTTTTTAAAA
1 TAATACTTTTTAATTTTTTAAAA
27281860 TATTTATTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (24 bp):
TAATACTTTTTAATTTTTTAAAAA
Found at i:27282337 original size:27 final size:25
Alignment explanation
Indices: 27282306--27282362 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 25
27282296 AAAGTATACA
*
27282306 ATTTTTT-TTCAGAAAACAAGATTCAC
1 ATTTTTTATTCACAAAA-AA-ATTCAC
*
27282332 ATTTTTTATTCACAAGAAAATTCAC
1 ATTTTTTATTCACAAAAAAATTCAC
27282357 ATTTTT
1 ATTTTT
27282363 GTATAAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 12 0.43
26 9 0.32
27 7 0.25
ACGTcount: A:0.37, C:0.14, G:0.05, T:0.44
Consensus pattern (25 bp):
ATTTTTTATTCACAAAAAAATTCAC
Found at i:27282662 original size:13 final size:13
Alignment explanation
Indices: 27282646--27282670 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27282636 ATTAAGATTC
27282646 TTTTAGTTGGGTT
1 TTTTAGTTGGGTT
27282659 TTTTAGTTGGGT
1 TTTTAGTTGGGT
27282671 CATTTTAAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.32, T:0.60
Consensus pattern (13 bp):
TTTTAGTTGGGTT
Found at i:27285290 original size:3 final size:3
Alignment explanation
Indices: 27285282--27285327 Score: 65
Period size: 3 Copynumber: 15.0 Consensus size: 3
27285272 GTATTATCAT
* *
27285282 TTA TTA TTA TTA TTA TTA CTA TTA TTA TCA TTA TTAA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA
27285328 GTTTTATTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
3 35 0.92
4 3 0.08
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:27287435 original size:19 final size:20
Alignment explanation
Indices: 27287395--27287438 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
27287385 GTCTCTTTAG
* *
27287395 GCATT-CATTTCATGCATTT
1 GCATTACATTGCATGCATAT
27287414 GCATTACATTGCAT-CATAT
1 GCATTACATTGCATGCATAT
27287433 GCATTA
1 GCATTA
27287439 GATTTTCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.41
Consensus pattern (20 bp):
GCATTACATTGCATGCATAT
Found at i:27289308 original size:9 final size:9
Alignment explanation
Indices: 27289294--27289348 Score: 96
Period size: 9 Copynumber: 6.3 Consensus size: 9
27289284 TGAATTCAAA
27289294 AAAAAAATC
1 AAAAAAATC
27289303 -AAAAAATC
1 AAAAAAATC
27289311 AAAAAAATC
1 AAAAAAATC
27289320 AAAAAAATC
1 AAAAAAATC
27289329 -AAAAAATC
1 AAAAAAATC
27289337 AAAAAAATC
1 AAAAAAATC
27289346 AAA
1 AAA
27289349 GTCAAAATAG
Statistics
Matches: 44, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
8 16 0.36
9 28 0.64
ACGTcount: A:0.78, C:0.11, G:0.00, T:0.11
Consensus pattern (9 bp):
AAAAAAATC
Found at i:27289316 original size:17 final size:17
Alignment explanation
Indices: 27289295--27289348 Score: 92
Period size: 17 Copynumber: 3.2 Consensus size: 17
27289285 GAATTCAAAA
27289295 AAAAAATC-AAAAAATC
1 AAAAAATCAAAAAAATC
27289311 AAAAAAATCAAAAAAATC
1 -AAAAAATCAAAAAAATC
27289329 AAAAAATCAAAAAAATC
1 AAAAAATCAAAAAAATC
27289346 AAA
1 AAA
27289349 GTCAAAATAG
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
17 28 0.78
18 8 0.22
ACGTcount: A:0.78, C:0.11, G:0.00, T:0.11
Consensus pattern (17 bp):
AAAAAATCAAAAAAATC
Found at i:27289328 original size:26 final size:26
Alignment explanation
Indices: 27289294--27289348 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
27289284 TGAATTCAAA
27289294 AAAAAAATCAAAAAATCAAAAAAATC
1 AAAAAAATCAAAAAATCAAAAAAATC
27289320 AAAAAAATCAAAAAATCAAAAAAATC
1 AAAAAAATCAAAAAATCAAAAAAATC
27289346 AAA
1 AAA
27289349 GTCAAAATAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.78, C:0.11, G:0.00, T:0.11
Consensus pattern (26 bp):
AAAAAAATCAAAAAATCAAAAAAATC
Found at i:27290064 original size:200 final size:200
Alignment explanation
Indices: 27289721--27290117 Score: 776
Period size: 200 Copynumber: 2.0 Consensus size: 200
27289711 GAGACTTACG
27289721 AGGATTGACGTGAGAAATTACCATTTACCCTCATTGTTTGTCGAACATCGGTACTGGGGCAACAC
1 AGGATTGACGTGAGAAATTACCATTTACCCTCATTGTTTGTCGAACATCGGTACTGGGGCAACAC
*
27289786 TTCTCTTTTTGGTTTACAGGATTGAGGTAGTTCTACCTATTAAAATCCCCTCATTTCTTGTTGAA
66 CTCTCTTTTTGGTTTACAGGATTGAGGTAGTTCTACCTATTAAAATCCCCTCATTTCTTGTTGAA
27289851 GGGATCCAATCGCAATGTGATCAGTTGGCCCTAGGAAAAGGGTTAAAAGCTATTCATCAGGGTCA
131 GGGATCCAATCGCAATGTGATCAGTTGGCCCTAGGAAAAGGGTTAAAAGCTATTCATCAGGGTCA
27289916 GAACA
196 GAACA
*
27289921 AGGATTGACGTGAGAAATTACCATTTGCCCTCATTGTTTGTCGAACATCGGTACTGGGGCAACAC
1 AGGATTGACGTGAGAAATTACCATTTACCCTCATTGTTTGTCGAACATCGGTACTGGGGCAACAC
27289986 CTCTCTTTTTGGTTTACAGGATTGAGGTAGTTCTACCTATTAAAATCCCCTCATTTCTTGTTGAA
66 CTCTCTTTTTGGTTTACAGGATTGAGGTAGTTCTACCTATTAAAATCCCCTCATTTCTTGTTGAA
27290051 GGGATCCAATCGCAATGTGATCAGTTGGCCCTAGGAAAAGGGTTAAAAGCTATTCATCAGGGTCA
131 GGGATCCAATCGCAATGTGATCAGTTGGCCCTAGGAAAAGGGTTAAAAGCTATTCATCAGGGTCA
27290116 GA
196 GA
27290118 TGCACCATAA
Statistics
Matches: 195, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
200 195 1.00
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (200 bp):
AGGATTGACGTGAGAAATTACCATTTACCCTCATTGTTTGTCGAACATCGGTACTGGGGCAACAC
CTCTCTTTTTGGTTTACAGGATTGAGGTAGTTCTACCTATTAAAATCCCCTCATTTCTTGTTGAA
GGGATCCAATCGCAATGTGATCAGTTGGCCCTAGGAAAAGGGTTAAAAGCTATTCATCAGGGTCA
GAACA
Found at i:27290558 original size:21 final size:21
Alignment explanation
Indices: 27290532--27290578 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
27290522 GCTCAAATAT
27290532 TGATCAGAATGGGGCATGAAG
1 TGATCAGAATGGGGCATGAAG
* *
27290553 TGATCAGATTGGGGCATGTAG
1 TGATCAGAATGGGGCATGAAG
27290574 TGATC
1 TGATC
27290579 CTGCTATACC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.28, C:0.11, G:0.36, T:0.26
Consensus pattern (21 bp):
TGATCAGAATGGGGCATGAAG
Found at i:27291729 original size:63 final size:63
Alignment explanation
Indices: 27291618--27291867 Score: 398
Period size: 63 Copynumber: 4.0 Consensus size: 63
27291608 TCATAAAATA
* **
27291618 GAACATACAGGTCATGTTCCCCAGAGAACAGATCAACGAAGTTATAGATCTTGCCTTCCTGCATT
1 GAACATACAAGTCATGTTCCCCAGAGAACAGATCAACGAAGTTATAGATCTTGCCTTCCTG--GG
*
27291683 G-ACA-GCGAAG-CATGTTCCCCAGAGAACAGATCAACGAAGTTATAGATCTTGCCTTCCTGGG
1 GAACATAC-AAGTCATGTTCCCCAGAGAACAGATCAACGAAGTTATAGATCTTGCCTTCCTGGG
*
27291744 GAACATACAGGTCATGTTCCCCAGAGAACAGATCAACGAAGTTATAGATCTTGCCTTCCTGGG
1 GAACATACAAGTCATGTTCCCCAGAGAACAGATCAACGAAGTTATAGATCTTGCCTTCCTGGG
*
27291807 GAACATACAGGTCATGTTCCCCAGAGAACAGATCAACGAAGTTATAGATCTTGCCTTCCTG
1 GAACATACAAGTCATGTTCCCCAGAGAACAGATCAACGAAGTTATAGATCTTGCCTTCCTG
27291868 CATTGACAGC
Statistics
Matches: 175, Mismatches: 6, Indels: 10
0.92 0.03 0.05
Matches are distributed among these distances:
61 1 0.01
62 5 0.03
63 163 0.93
64 5 0.03
65 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.24
Consensus pattern (63 bp):
GAACATACAAGTCATGTTCCCCAGAGAACAGATCAACGAAGTTATAGATCTTGCCTTCCTGGG
Found at i:27291906 original size:44 final size:44
Alignment explanation
Indices: 27291856--27291990 Score: 107
Period size: 44 Copynumber: 3.1 Consensus size: 44
27291846 AGTTATAGAT
27291856 CTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAAC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAAC
** * * * * * *
27291900 CTTGCC-TCTCTCGGTTATGA-TG-G-AGCTGGTTGAAGATAAAAGAT
1 CTTGCCTTC-CT-GCAT-TGACAGCGAAGCAGGTCGAAGACACAA-AC
* * *
27291944 CTTGCCTTCCTGCATTGACAGCAAAGCAAGTCAAAGACACAAAC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAAC
27291988 CTT
1 CTT
27291991 AACCTTGCCT
Statistics
Matches: 64, Mismatches: 19, Indels: 16
0.65 0.19 0.16
Matches are distributed among these distances:
42 3 0.05
43 19 0.30
44 22 0.34
45 17 0.27
46 3 0.05
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (44 bp):
CTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAAC
Found at i:27292036 original size:94 final size:94
Alignment explanation
Indices: 27291852--27292978 Score: 1876
Period size: 94 Copynumber: 12.2 Consensus size: 94
27291842 ACGAAGTTAT
* * *
27291852 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACAC--A----AACCTTGCCTCTCT
1 AGATCTTGCCTTCCTGCATTGACAGCAAAGCAAGTCAAAGACACAAACCTTAACCTTGCCTCTCT
*
27291911 CGGTTATGATGGAGCTGGTTGAAGATAAA
66 CGGTTGTGATGGAGCTGGTTGAAGATAAA
27291940 AGATCTTGCCTTCCTGCATTGACAGCAAAGCAAGTCAAAGACACAAACCTTAACCTTGCCTCTCT
1 AGATCTTGCCTTCCTGCATTGACAGCAAAGCAAGTCAAAGACACAAACCTTAACCTTGCCTCTCT
27292005 CGGTTGTGATGGAGCTGGTTGAAGATAAA
66 CGGTTGTGATGGAGCTGGTTGAAGATAAA
27292034 AGATCTTGCCTTCCTGCATTGACAGCAAAGCAAGTCAAAGACACAAACCTTAACCTTGCCTCTCT
1 AGATCTTGCCTTCCTGCATTGACAGCAAAGCAAGTCAAAGACACAAACCTTAACCTTGCCTCTCT
27292099 CGGTTGTGATGGAGCTGGTTGAAGATAAA
66 CGGTTGTGATGGAGCTGGTTGAAGATAAA
27292128 AGATCTTGCCTTCCTGCATTGACAGCAAAGCAAGTCAAAGACACAAACCTTAACCTTGCCTCTCT
1 AGATCTTGCCTTCCTGCATTGACAGCAAAGCAAGTCAAAGACACAAACCTTAACCTTGCCTCTCT
27292193 CGGTTGTGATGGAGCTGGTTGAAGATAAA
66 CGGTTGTGATGGAGCTGGTTGAAGATAAA
27292222 AGATCTTGCCTTCCTGCATTGACAGCAAAGCAAGTCAAAGACACAAACCTTAACCTTGCCTCTCT
1 AGATCTTGCCTTCCTGCATTGACAGCAAAGCAAGTCAAAGACACAAACCTTAACCTTGCCTCTCT
*
27292287 CGGTTATGATGGAGCTGGTTGAAGATAAA
66 CGGTTGTGATGGAGCTGGTTGAAGATAAA
* * * * *
27292316 AGATCTTGCCTTCCGGCATTGACAGCGAAGCAGGTCGAAGACAC--A----AACCGTGCCTCTCT
1 AGATCTTGCCTTCCTGCATTGACAGCAAAGCAAGTCAAAGACACAAACCTTAACCTTGCCTCTCT
*
27292375 CGGTTGTGATGGAGCTGGTTGAAGACAAA
66 CGGTTGTGATGGAGCTGGTTGAAGATAAA
27292404 AGATCTTGCCTTCCTGCATTGACAGCAAAGCAAGTCAAAGACACAAACCTTAACCTTGCCTCTCT
1 AGATCTTGCCTTCCTGCATTGACAGCAAAGCAAGTCAAAGACACAAACCTTAACCTTGCCTCTCT
*
27292469 CGGTTGTGATGGAGCTGGTTGAAGACAAA
66 CGGTTGTGATGGAGCTGGTTGAAGATAAA
27292498 AGATCTTGCCTTCCTGCATTGACAGCAAAGCAAGTCAAAGACACAAACCTTAACCTTGCCTCTCT
1 AGATCTTGCCTTCCTGCATTGACAGCAAAGCAAGTCAAAGACACAAACCTTAACCTTGCCTCTCT
*
27292563 CGGTTGTGATGGAGCTGGTTGAAGACAAA
66 CGGTTGTGATGGAGCTGGTTGAAGATAAA
*
27292592 AGATCTTGCCTTCCTGCATTGACAGCAAAGCAAGTCAAAGACACAAACCTTAACCTTGCCTCCCT
1 AGATCTTGCCTTCCTGCATTGACAGCAAAGCAAGTCAAAGACACAAACCTTAACCTTGCCTCTCT
* * *
27292657 CAGTTGTGATGGAGCTGGTTGAAGACAAC
66 CGGTTGTGATGGAGCTGGTTGAAGATAAA
*
27292686 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAAGTCAAAGACACAAACCTTAACCTTGCCTCTCT
1 AGATCTTGCCTTCCTGCATTGACAGCAAAGCAAGTCAAAGACACAAACCTTAACCTTGCCTCTCT
*
27292751 CGGTTGTGATGGAGCTGGTTGAAGACAAA
66 CGGTTGTGATGGAGCTGGTTGAAGATAAA
27292780 AGATCTTGCCTTCCTGCATTGACAGCAAAGCAAGTCAAAGACACAAACCTTAACCTTGCCTCTCT
1 AGATCTTGCCTTCCTGCATTGACAGCAAAGCAAGTCAAAGACACAAACCTTAACCTTGCCTCTCT
27292845 CGGTTGTGATGGAGCTGGTTGAAGATAAA
66 CGGTTGTGATGGAGCTGGTTGAAGATAAA
* *
27292874 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCAAAGACAC--A----AACCTTGCCTCTCT
1 AGATCTTGCCTTCCTGCATTGACAGCAAAGCAAGTCAAAGACACAAACCTTAACCTTGCCTCTCT
* * * * * **
27292933 CAGTTATGGTGGAGCTGATTAAAGATAGC
66 CGGTTGTGATGGAGCTGGTTGAAGATAAA
27292962 AGATCTTGCCTTCCTGC
1 AGATCTTGCCTTCCTGC
27292979 GTTAACAATG
Statistics
Matches: 992, Mismatches: 35, Indels: 24
0.94 0.03 0.02
Matches are distributed among these distances:
88 174 0.18
90 2 0.00
92 2 0.00
94 814 0.82
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.25
Consensus pattern (94 bp):
AGATCTTGCCTTCCTGCATTGACAGCAAAGCAAGTCAAAGACACAAACCTTAACCTTGCCTCTCT
CGGTTGTGATGGAGCTGGTTGAAGATAAA
Found at i:27292399 original size:43 final size:42
Alignment explanation
Indices: 27292273--27292414 Score: 117
Period size: 44 Copynumber: 3.2 Consensus size: 42
27292263 CACAAACCTT
*
27292273 AACCTTGCCTCTCTCGGTTATGATGGAGCTGGTTGAAGATAAA
1 AACCTTGCCTCTCTCGGTT-TGATGGAGCTGGTTGAAGACAAA
* * * * * *
27292316 AGATCTTGCCT-TC-CGGCATTGACAGCGAAGCAGGTCGAAGACACA
1 A-ACCTTGCCTCTCTCGG-TTTGA-TG-G-AGCTGGTTGAAGACAAA
*
27292361 AACCGTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAA
1 AACCTTGCCTCTCTCGGTT-TGATGGAGCTGGTTGAAGACAAA
*
27292404 AGATCTTGCCT
1 A-ACCTTGCCT
27292415 TCCTGCATTG
Statistics
Matches: 74, Mismatches: 16, Indels: 17
0.69 0.15 0.16
Matches are distributed among these distances:
42 6 0.08
43 20 0.27
44 24 0.32
45 18 0.24
46 6 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (42 bp):
AACCTTGCCTCTCTCGGTTTGATGGAGCTGGTTGAAGACAAA
Found at i:27292720 original size:464 final size:464
Alignment explanation
Indices: 27291852--27292924 Score: 1930
Period size: 464 Copynumber: 2.3 Consensus size: 464
27291842 ACGAAGTTAT
*
27291852 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTA
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTG
27291917 TGATGGAGCTGGTTGAAGATAAAAGATCTTGCCTTCCTGCATTGACAGCAAAGCAAGTCAAAGAC
66 TGATGGAGCTGGTTGAAGATAAAAGATCTTGCCTTCCTGCATTGACAGCAAAGCAAGTCAAAGAC
*
27291982 ACAAACCTTAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGATAAAAGATCTTGCCTTC
131 ACAAACCTTAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTC
27292047 CTGCATTGACAGCAAAGCAAGTCAAAGACACAAACCTTAACCTTGCCTCTCTCGGTTGTGATGGA
196 CTGCATTGACAGCAAAGCAAGTCAAAGACACAAACCTTAACCTTGCCTCTCTCGGTTGTGATGGA
*
27292112 GCTGGTTGAAGATAAAAGATCTTGCCTTCCTGCATTGACAGCAAAGCAAGTCAAAGACACAAACC
261 GCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCAAAGCAAGTCAAAGACACAAACC
* * *
27292177 TTAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGATAAAAGATCTTGCCTTCCTGCATT
326 TTAACCTTGCCTCCCTCAGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATT
27292242 GACAGCAAAGCAAGTCAAAGACACAAACCTTAACCTTGCCTCTCTCGGTTATGATGGAGCTGGTT
391 GACAGCAAAGCAAGTCAAAGACACAAACCTTAACCTTGCCTCTCTCGGTTATGATGGAGCTGGTT
*
27292307 GAAGATAAA
456 GAAGACAAA
* *
27292316 AGATCTTGCCTTCCGGCATTGACAGCGAAGCAGGTCGAAGACACAAACCGTGCCTCTCTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTG
*
27292381 TGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCAAAGCAAGTCAAAGAC
66 TGATGGAGCTGGTTGAAGATAAAAGATCTTGCCTTCCTGCATTGACAGCAAAGCAAGTCAAAGAC
27292446 ACAAACCTTAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTC
131 ACAAACCTTAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTC
27292511 CTGCATTGACAGCAAAGCAAGTCAAAGACACAAACCTTAACCTTGCCTCTCTCGGTTGTGATGGA
196 CTGCATTGACAGCAAAGCAAGTCAAAGACACAAACCTTAACCTTGCCTCTCTCGGTTGTGATGGA
27292576 GCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCAAAGCAAGTCAAAGACACAAACC
261 GCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCAAAGCAAGTCAAAGACACAAACC
*
27292641 TTAACCTTGCCTCCCTCAGTTGTGATGGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGCATT
326 TTAACCTTGCCTCCCTCAGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATT
* *
27292706 GACAGCGAAGCAAGTCAAAGACACAAACCTTAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTT
391 GACAGCAAAGCAAGTCAAAGACACAAACCTTAACCTTGCCTCTCTCGGTTATGATGGAGCTGGTT
27292771 GAAGACAAA
456 GAAGACAAA
* * *
27292780 AGATCTTGCCTTCCTGCATTGACAGCAAAGCAAGTCAAAGACACAAACCTTAACCTTGCCTCTCT
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACAC--A----AACCTTGCCTCTCT
* *
27292845 CGGTTGTGATGGAGCTGGTTGAAGATAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTC
60 CGGTTGTGATGGAGCTGGTTGAAGATAAAAGATCTTGCCTTCCTGCATTGACAGCAAAGCAAGTC
27292910 AAAGACACAAACCTT
125 AAAGACACAAACCTT
27292925 GCCTCTCTCA
Statistics
Matches: 582, Mismatches: 21, Indels: 6
0.96 0.03 0.01
Matches are distributed among these distances:
464 491 0.84
466 1 0.00
470 90 0.15
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.25
Consensus pattern (464 bp):
AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTG
TGATGGAGCTGGTTGAAGATAAAAGATCTTGCCTTCCTGCATTGACAGCAAAGCAAGTCAAAGAC
ACAAACCTTAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTC
CTGCATTGACAGCAAAGCAAGTCAAAGACACAAACCTTAACCTTGCCTCTCTCGGTTGTGATGGA
GCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCAAAGCAAGTCAAAGACACAAACC
TTAACCTTGCCTCCCTCAGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATT
GACAGCAAAGCAAGTCAAAGACACAAACCTTAACCTTGCCTCTCTCGGTTATGATGGAGCTGGTT
GAAGACAAA
Found at i:27293197 original size:44 final size:44
Alignment explanation
Indices: 27293137--27293693 Score: 328
Period size: 44 Copynumber: 12.8 Consensus size: 44
27293127 AGAATTTCAG
*
27293137 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGATAGTA
* * * * * * *
27293181 ATCCTATCTCTCTGAGATTACAGTGGAGCGGATT-AAAACCAATG
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGA-TAGTA
* * * * * * **
27293225 ATCTTATCTCTCT-AAAGTTATAGTAGA-CTAGATCGCA-CCAG--
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGC-AGATTGAAGATAGTA
* * * ** *
27293266 GTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGA-ATTTCA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGATA-GT-A
27293311 GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGATAGTA
1 -ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGATAGTA
* * * * * *
27293356 ATCCTATCTCCCTGAGATTACAGTGGAGCGGATT-AAAACCAATG
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGA-TAGTA
* ** * * *
27293400 ATCTTATCTCTCTGA-AGTTACAGCAGAGTAGATCG-CG-TCA--A
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGAT-AGTA
* * * ** *
27293441 GTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGA-ATTTCA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGATA-GT-A
27293486 GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGATAGTA
1 -ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGATAGTA
* * * *
27293531 ATCCTATCTCCCTGAGATTACAGTGGAGCGGATT-AAAATAAAG-G
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGAT--AGTA
* * * * * *
27293575 ATCCTATCTCTCTGA-AGTTACAGTAGAGTAGATCG-TG-TCAG--
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGAT-AGTA
* * *
27293616 ATCTTATCTCCCTGAGATTACAGCGGAACAGATTGAAGTTAGTA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGATAGTA
* *
27293660 ATCCTATCTCCCTGAGATTACAGTGGAGCGGATT
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATT
27293694 AAAGGATCTT
Statistics
Matches: 389, Mismatches: 89, Indels: 70
0.71 0.16 0.13
Matches are distributed among these distances:
41 77 0.20
42 11 0.03
43 20 0.05
44 203 0.52
45 6 0.02
46 70 0.18
47 2 0.01
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.29
Consensus pattern (44 bp):
ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGATAGTA
Found at i:27293250 original size:175 final size:175
Alignment explanation
Indices: 27293026--27293693 Score: 1011
Period size: 175 Copynumber: 3.8 Consensus size: 175
27293016 CCATCGGTTG
* * * *
27293026 CAGTGAAGCTGATTAAAATAAATGATCTTATCTCTCTAAAGTTATAGTAGAGTAGATCGCACCAG
1 CAGTGGAGCGGATTAAAACAAATGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCACCAG
* *
27293091 GTCTTATTTCCCTGATATTACAGTGGAACAAACCGAAGAATTTCAGATCTTATCTCCCTGAGATT
66 GTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATT
* *
27293156 ACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCTCTGAGATTA
131 ACAGTGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTA
* * *
27293201 CAGTGGAGCGGATTAAAACCAATGATCTTATCTCTCTAAAGTTATAGTAGACTAGATCGCACCAG
1 CAGTGGAGCGGATTAAAACAAATGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCACCAG
27293266 GTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATT
66 GTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATT
27293331 ACAGTGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTA
131 ACAGTGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTA
* * * ** *
27293376 CAGTGGAGCGGATTAAAACCAATGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCGTCAA
1 CAGTGGAGCGGATTAAAACAAATGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCACCAG
27293441 GTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATT
66 GTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATT
27293506 ACAGTGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTA
131 ACAGTGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTA
* * * * ***
27293551 CAGTGGAGCGGATTAAAATAAAGGATCCTATCTCTCTGAAGTTACAGTAGAGTAGATCGTGTCAG
1 CAGTGGAGCGGATTAAAACAAATGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCACCAG
* * * ** *
27293616 ATCTTATCTCCCTGAGATTACAGCGGAACAGATTGAAG---TT-AGTAATCCTATCTCCCTGAGA
66 GTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAG--ATCTTATCTCCCTGAGA
*
27293677 TTACAGTGGAGCGGATT
129 TTACAGTGGAGCAGATT
27293694 AAAGGATCTT
Statistics
Matches: 461, Mismatches: 30, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
171 2 0.00
172 2 0.00
173 32 0.07
175 425 0.92
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (175 bp):
CAGTGGAGCGGATTAAAACAAATGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCACCAG
GTCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATT
ACAGTGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTA
Found at i:27293287 original size:85 final size:84
Alignment explanation
Indices: 27293192--27293638 Score: 258
Period size: 85 Copynumber: 5.1 Consensus size: 84
27293182 TCCTATCTCT
*
27293192 CTGAGATTACAGTGGAGCGGATTAAAACCAATGATCTTATCTCTCTAAAGTTATAGTAGACTAGA
1 CTGAGATTACAGTGGAGCGGATTAAAACCAATGATCTTATCTCTCT-AAGTTACAGTAGACTAGA
*
27293257 TCGCACCAGGTCTTATTTCC
65 TCGCAACAGGTCTTATTTCC
* * ** * * * *
27293277 CTGAGATTACAGTGGAACAGACCGAAGAATTTC-A-GATCTTATCTCCCTGAGATTACAGTGGAG
1 CTGAGATTACAGTGGAGCGGA-TTAA-AA--CCAATGATCTTATCTCTCTAAG-TTACAGTAGA-
* * * * * *
27293340 C-AGATTGAAGATAGTAATCCTATCTCC
60 CTAGATCGCA-ACAG--GTCTTATTTCC
* *
27293367 CTGAGATTACAGTGGAGCGGATTAAAACCAATGATCTTATCTCTCTGAAGTTACAGCAGAGTAGA
1 CTGAGATTACAGTGGAGCGGATTAAAACCAATGATCTTATCTCTCT-AAGTTACAGTAGACTAGA
** *
27293432 TCGCGTCAAGTCTTATTTCC
65 TCGCAACAGGTCTTATTTCC
* * ** * * * *
27293452 CTGAGATTACAGTGGAACAGACCGAAGAATTTC-A-GATCTTATCTCCCTGAGATTACAGTGGAG
1 CTGAGATTACAGTGGAGCGGA-TTAA-AA--CCAATGATCTTATCTCTCTAAG-TTACAGTAGA-
* * * * * *
27293515 C-AGATTGAAGATAGTAATCCTATCTCC
60 CTAGATCGCA-ACAG--GTCTTATTTCC
** * * *
27293542 CTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCCTATCTCTCTGAAGTTACAGTAGAGTAGA
1 CTGAGATTACAGTGGAGCGGATTAAAACCAATGATCTTATCTCTCT-AAGTTACAGTAGACTAGA
*** * *
27293607 TCGTGTCAGATCTTATCTCC
65 TCGCAACAGGTCTTATTTCC
27293627 CTGAGATTACAG
1 CTGAGATTACAG
27293639 CGGAACAGAT
Statistics
Matches: 266, Mismatches: 70, Indels: 52
0.69 0.18 0.13
Matches are distributed among these distances:
85 68 0.26
86 10 0.04
87 62 0.23
88 62 0.23
89 10 0.04
90 54 0.20
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.28
Consensus pattern (84 bp):
CTGAGATTACAGTGGAGCGGATTAAAACCAATGATCTTATCTCTCTAAGTTACAGTAGACTAGAT
CGCAACAGGTCTTATTTCC
Found at i:27293539 original size:131 final size:129
Alignment explanation
Indices: 27293313--27293553 Score: 299
Period size: 131 Copynumber: 1.9 Consensus size: 129
27293303 GAATTTCAGA
* **
27293313 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTACA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGACCGAAGATAGTAATCCTATCTCCCTGAGATTACA
* * * *
27293378 GTGGAGCGGATTAAAACCAATGATCTTATCTCTCTGA-AGTTACAGCAGAGTAGATCGCGTCAAG
66 GTGGAGCAGATTAAAACCAATAATCCTATCTCCCTGAGA-TTACAGCAGAGTAGATCGCGTCAAG
* * *
27293442 TCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGA-ATTTCAGATCTTATCTCCCTGAGATT
1 TCTTATCTCCCTGAGATTACAGTGGAACAGACCGAAGATA-GT-A-ATCCTATCTCCCTGAGATT
* * *
27293506 ACAGTGGAGCAGATTGAAGA-TAGTAATCCTATCTCCCTGAGATTACAG
63 ACAGTGGAGCAGATT-AAAACCAATAATCCTATCTCCCTGAGATTACAG
27293554 TGGAGCGGAT
Statistics
Matches: 94, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
128 1 0.01
129 35 0.37
130 1 0.01
131 53 0.56
132 4 0.04
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (129 bp):
TCTTATCTCCCTGAGATTACAGTGGAACAGACCGAAGATAGTAATCCTATCTCCCTGAGATTACA
GTGGAGCAGATTAAAACCAATAATCCTATCTCCCTGAGATTACAGCAGAGTAGATCGCGTCAAG
Found at i:27293650 original size:129 final size:124
Alignment explanation
Indices: 27293483--27293721 Score: 397
Period size: 129 Copynumber: 1.9 Consensus size: 124
27293473 CCGAAGAATT
* *
27293483 TCAGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAACAGATTGAAGATAGTAATCCTATCTCCCTGAGA
27293548 TTACAGTGGAGCGGATTAAAATAAAGGATCCTATCTCTCTGAAGTTACAGTAGAGTAGATCGTG
66 TTACAGTGGAGCGGA-T----TAAAGGATCCTATCTCTCTGAAGTTACAGTAGAGTAGATCGTG
*
27293612 TCAGATCTTATCTCCCTGAGATTACAGCGGAACAGATTGAAGTTAGTAATCCTATCTCCCTGAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAACAGATTGAAGATAGTAATCCTATCTCCCTGAGA
*
27293677 TTACAGTGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAG
66 TTACAGTGGAGCGGATTAAAGGATCCTATCTCTCTGAAGTTACAG
27293722 NNNNNNNNNN
Statistics
Matches: 106, Mismatches: 4, Indels: 5
0.92 0.03 0.04
Matches are distributed among these distances:
124 28 0.26
128 1 0.01
129 77 0.73
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (124 bp):
TCAGATCTTATCTCCCTGAGATTACAGCGGAACAGATTGAAGATAGTAATCCTATCTCCCTGAGA
TTACAGTGGAGCGGATTAAAGGATCCTATCTCTCTGAAGTTACAGTAGAGTAGATCGTG
Found at i:27300460 original size:286 final size:286
Alignment explanation
Indices: 27299943--27300514 Score: 1002
Period size: 286 Copynumber: 2.0 Consensus size: 286
27299933 TATTTAGTTG
* *
27299943 CCAAAGCTATGCACACCTTATTTTGTGCACTTGGCTTGAAAGGATATATTAAAGTATCATTTTGT
1 CCAAAGCTATGCACACCTTATTTTGTGCACTTGGCTTGAAAGAATATATTAAAGTATCATCTTGT
* * * *
27300008 TCCAATGCCAATGAGATATGGGATTAGCTTGAAGTCACACATGAACGTATTAGCCAATTAAAGAA
66 TCCAATGCCAATGAGATATGGGATAAGCTTGAAGTCACACATGAACATATCAGCCAATTAAAAAA
*
27300073 GTCTAAAGTTGGAATTCTTACTCTAAATTATGAAACCTTCAAGATGAAGCTCGAAGAAGATATCA
131 GTCTAAAGTTGGAATTCTTACTCTAAATTATGAAACCTTCAAAATGAAGCTCGAAGAAGATATCA
*
27300138 AGACGATGTTCGACCGGTTTACTATCATCATCAATGGATTAAAGTCTTAT-GAGAAGACATATCC
196 AGACGATGTTCGACCAGTTTACTATCATCATCAATGGATTAAAGTCTTATAG-GAAGACATATCC
27300202 AAATGAAAAGGTGGTAAGGAAGATGCT
260 AAATGAAAAGGTGGTAAGGAAGATGCT
* * *
27300229 CCAAGGCTATGCACACCTTATTTTGTGTACTTGGCTTGAAAGAATATATTAGAGTATCATCTTGT
1 CCAAAGCTATGCACACCTTATTTTGTGCACTTGGCTTGAAAGAATATATTAAAGTATCATCTTGT
27300294 TCCAATGCCAATGAGATATGGGATAAGCTTGAAGTCACACATGAACATATCAGCCAATTAAAAAA
66 TCCAATGCCAATGAGATATGGGATAAGCTTGAAGTCACACATGAACATATCAGCCAATTAAAAAA
* *
27300359 GTCTAAAGTTGGAATTCTTACTCTAAATTATGAAACCTTCAAAATGAAGCTCGAGGGAGATATCA
131 GTCTAAAGTTGGAATTCTTACTCTAAATTATGAAACCTTCAAAATGAAGCTCGAAGAAGATATCA
*
27300424 AGACGATGTTCGATCAGTTTACTATCATCATCAATGGATTAAAGTCTTATAGGAAGACATATCCA
196 AGACGATGTTCGACCAGTTTACTATCATCATCAATGGATTAAAGTCTTATAGGAAGACATATCCA
27300489 AATGAAAAGGTGGTAAGGAAGATGCT
261 AATGAAAAGGTGGTAAGGAAGATGCT
27300515 TCGCAGCTTG
Statistics
Matches: 271, Mismatches: 14, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
286 270 1.00
287 1 0.00
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.29
Consensus pattern (286 bp):
CCAAAGCTATGCACACCTTATTTTGTGCACTTGGCTTGAAAGAATATATTAAAGTATCATCTTGT
TCCAATGCCAATGAGATATGGGATAAGCTTGAAGTCACACATGAACATATCAGCCAATTAAAAAA
GTCTAAAGTTGGAATTCTTACTCTAAATTATGAAACCTTCAAAATGAAGCTCGAAGAAGATATCA
AGACGATGTTCGACCAGTTTACTATCATCATCAATGGATTAAAGTCTTATAGGAAGACATATCCA
AATGAAAAGGTGGTAAGGAAGATGCT
Found at i:27310401 original size:6 final size:6
Alignment explanation
Indices: 27310392--27310460 Score: 59
Period size: 6 Copynumber: 10.7 Consensus size: 6
27310382 TAAGTCTAAG
*
27310392 AAAATA AAAATAA AAAATA AAACA-A AAAATA AAAATAA AACAACTA AAAACA
1 AAAATA AAAAT-A AAAATA AAA-ATA AAAATA AAAAT-A AA-AA-TA AAAATA
*
27310444 AAACATA AAAAGA AAAA
1 AAA-ATA AAAATA AAAA
27310461 AAAGAAAAAA
Statistics
Matches: 53, Mismatches: 3, Indels: 14
0.76 0.04 0.20
Matches are distributed among these distances:
5 1 0.02
6 29 0.55
7 17 0.32
8 5 0.09
9 1 0.02
ACGTcount: A:0.81, C:0.07, G:0.01, T:0.10
Consensus pattern (6 bp):
AAAATA
Found at i:27310408 original size:13 final size:13
Alignment explanation
Indices: 27310392--27310461 Score: 79
Period size: 13 Copynumber: 5.3 Consensus size: 13
27310382 TAAGTCTAAG
*
27310392 AAAATAAAAATAA
1 AAAATAAAAACAA
27310405 AAAAT-AAAACAA
1 AAAATAAAAACAA
*
27310417 AAAATAAAAATAA
1 AAAATAAAAACAA
27310430 AACAACTAAAAACAA
1 AA-AA-TAAAAACAA
* *
27310445 AACATAAAAAGAA
1 AAAATAAAAACAA
27310458 AAAA
1 AAAA
27310462 AAGAAAAAAG
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
12 11 0.23
13 24 0.50
14 3 0.06
15 10 0.21
ACGTcount: A:0.81, C:0.07, G:0.01, T:0.10
Consensus pattern (13 bp):
AAAATAAAAACAA
Found at i:27310409 original size:7 final size:7
Alignment explanation
Indices: 27310392--27310484 Score: 54
Period size: 7 Copynumber: 13.7 Consensus size: 7
27310382 TAAGTCTAAG
27310392 AAAAT-A
1 AAAATAA
27310398 AAAATAA
1 AAAATAA
27310405 AAAAT--
1 AAAATAA
*
27310410 AAAACAA
1 AAAATAA
27310417 AAAAT-A
1 AAAATAA
27310423 AAAATAA
1 AAAATAA
27310430 AACAACT-A
1 AA-AA-TAA
*
27310438 AAAACAA
1 AAAATAA
*
27310445 AACATAA
1 AAAATAA
*
27310452 AAAGAAAA
1 AAA-ATAA
*
27310460 AAAAGAA
1 AAAATAA
*
27310467 AAAAGAA
1 AAAATAA
*
27310474 AACA-AA
1 AAAATAA
27310480 AAAAT
1 AAAAT
27310485 CAATAATAAT
Statistics
Matches: 68, Mismatches: 10, Indels: 17
0.72 0.11 0.18
Matches are distributed among these distances:
5 4 0.06
6 16 0.24
7 36 0.53
8 11 0.16
9 1 0.01
ACGTcount: A:0.82, C:0.06, G:0.03, T:0.09
Consensus pattern (7 bp):
AAAATAA
Found at i:27310418 original size:18 final size:18
Alignment explanation
Indices: 27310397--27310434 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
27310387 CTAAGAAAAT
27310397 AAAAATAAAAAATAAAACA
1 AAAAAT-AAAAATAAAACA
27310416 AAAAATAAAAATAAAACA
1 AAAAATAAAAATAAAACA
27310434 A
1 A
27310435 CTAAAAACAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.84, C:0.05, G:0.00, T:0.11
Consensus pattern (18 bp):
AAAAATAAAAATAAAACA
Found at i:27310468 original size:28 final size:29
Alignment explanation
Indices: 27310392--27310483 Score: 78
Period size: 29 Copynumber: 3.1 Consensus size: 29
27310382 TAAGTCTAAG
* * *
27310392 AAAATAAAAATAAAAAATAAAACAAAAAATA
1 AAAAGAAAAA-AAAGAA-AAAACAAAACATA
* * **
27310423 AAAA-TAAAACAACTAAAAACAAAACATA
1 AAAAGAAAAAAAAGAAAAAACAAAACATA
* *
27310451 AAAAGAAAAAAAAGAAAAAAGAAAACAAA
1 AAAAGAAAAAAAAGAAAAAACAAAACATA
27310480 AAAA
1 AAAA
27310484 TCAATAATAA
Statistics
Matches: 49, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
28 16 0.33
29 25 0.51
30 4 0.08
31 4 0.08
ACGTcount: A:0.83, C:0.07, G:0.03, T:0.08
Consensus pattern (29 bp):
AAAAGAAAAAAAAGAAAAAACAAAACATA
Found at i:27310492 original size:3 final size:3
Alignment explanation
Indices: 27310486--27310559 Score: 53
Period size: 3 Copynumber: 24.7 Consensus size: 3
27310476 CAAAAAAATC
* * * * * *
27310486 AAT AAT AAT AAT CAT AAT CAT AAT CAT AAT AAT AAC AGT AA- AACA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T
*
27310531 AAT AAT AAT AGT AAT GAA- AAT AAT AAT AA
1 AAT AAT AAT AAT AAT -AAT AAT AAT AAT AA
27310560 ACATGAAAAC
Statistics
Matches: 54, Mismatches: 13, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
2 4 0.07
3 46 0.85
4 4 0.07
ACGTcount: A:0.62, C:0.07, G:0.04, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:27310508 original size:12 final size:12
Alignment explanation
Indices: 27310482--27310520 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
27310472 AAAACAAAAA
27310482 AATCAATAATAAT
1 AATC-ATAATAAT
*
27310495 AATCATAATCAT
1 AATCATAATAAT
27310507 AATCATAATAAT
1 AATCATAATAAT
27310519 AA
1 AA
27310521 CAGTAAAACA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
12 20 0.83
13 4 0.17
ACGTcount: A:0.59, C:0.10, G:0.00, T:0.31
Consensus pattern (12 bp):
AATCATAATAAT
Found at i:27310580 original size:17 final size:18
Alignment explanation
Indices: 27310530--27310580 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
27310520 ACAGTAAAAC
*
27310530 AAATAATAATAGTA-ATGA
1 AAATAATAATA-AACATGA
27310548 AAATAATAATAAACATGA
1 AAATAATAATAAACATGA
27310566 AAACTAA-AA-AAACAT
1 AAA-TAATAATAAACAT
27310581 TGATTAAATG
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 7 0.23
18 20 0.67
19 3 0.10
ACGTcount: A:0.67, C:0.06, G:0.06, T:0.22
Consensus pattern (18 bp):
AAATAATAATAAACATGA
Found at i:27310726 original size:15 final size:14
Alignment explanation
Indices: 27310704--27310757 Score: 63
Period size: 15 Copynumber: 3.6 Consensus size: 14
27310694 TAGATCAGTA
27310704 AAATAAAAATAAAT
1 AAATAAAAATAAAT
27310718 AATATAAAAATAAAT
1 AA-ATAAAAATAAAT
27310733 AAATAATAAATTAGAAT
1 AAATAA-AAA-TA-AAT
*
27310750 AAAGAAAA
1 AAATAAAA
27310758 GGGTAAAAGG
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
14 6 0.17
15 17 0.49
16 4 0.11
17 8 0.23
ACGTcount: A:0.74, C:0.00, G:0.04, T:0.22
Consensus pattern (14 bp):
AAATAAAAATAAAT
Found at i:27312418 original size:30 final size:30
Alignment explanation
Indices: 27312343--27312424 Score: 74
Period size: 30 Copynumber: 2.7 Consensus size: 30
27312333 GGTTAGGCAG
* * *
27312343 ACGCCCGCGTAAGCCACATGGGCTAGACAT
1 ACGCCCGTGTAAGCCACACGGGCTAGACAC
* * * * *
27312373 ATGTCTGTGTCAGCCAGACGGGCTAGACAC
1 ACGCCCGTGTAAGCCACACGGGCTAGACAC
* *
27312403 ACGCCCGTGTGAGCCATACGGG
1 ACGCCCGTGTAAGCCACACGGG
27312425 TTGGAAACAT
Statistics
Matches: 39, Mismatches: 13, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.23, C:0.30, G:0.30, T:0.16
Consensus pattern (30 bp):
ACGCCCGTGTAAGCCACACGGGCTAGACAC
Found at i:27316123 original size:18 final size:18
Alignment explanation
Indices: 27316078--27316150 Score: 58
Period size: 18 Copynumber: 4.1 Consensus size: 18
27316068 CAAATAGAAT
27316078 AGATGCAGATACA-ATAAC
1 AGATGCAGATACAGAT-AC
* ** *
27316096 TGATATAGATTCAGATAC
1 AGATGCAGATACAGATAC
*
27316114 AGATGCAGATGCAGATAC
1 AGATGCAGATACAGATAC
* * *
27316132 GGATTCAGACACAGATAC
1 AGATGCAGATACAGATAC
27316150 A
1 A
27316151 AATATAGTGT
Statistics
Matches: 41, Mismatches: 13, Indels: 2
0.73 0.23 0.04
Matches are distributed among these distances:
18 39 0.95
19 2 0.05
ACGTcount: A:0.42, C:0.16, G:0.21, T:0.21
Consensus pattern (18 bp):
AGATGCAGATACAGATAC
Found at i:27323828 original size:47 final size:43
Alignment explanation
Indices: 27323747--27323848 Score: 123
Period size: 47 Copynumber: 2.3 Consensus size: 43
27323737 AAAACAATTT
** *
27323747 AAAATAAATAATAATTTAAAATAAATGATTTATAGGAACAACTC
1 AAAATAAATAATAATTTAAAATAAACAATATATAGGAA-AACTC
* *
27323791 AAAATAAATAATAAAAGTTTCAAATAAACAATATATAGGAAAACTT
1 AAAATAAATAAT--AA-TTTAAAATAAACAATATATAGGAAAACTC
27323837 AAAATAAATAAT
1 AAAATAAATAAT
27323849 GATAAAACAA
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
44 12 0.24
46 18 0.36
47 20 0.40
ACGTcount: A:0.61, C:0.06, G:0.06, T:0.27
Consensus pattern (43 bp):
AAAATAAATAATAATTTAAAATAAACAATATATAGGAAAACTC
Found at i:27323949 original size:15 final size:15
Alignment explanation
Indices: 27323929--27323961 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
27323919 AAAGATATAT
27323929 ATATAATAGTTTACA
1 ATATAATAGTTTACA
27323944 ATATAATAGTTTACA
1 ATATAATAGTTTACA
27323959 ATA
1 ATA
27323962 AATGATATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (15 bp):
ATATAATAGTTTACA
Found at i:27324038 original size:20 final size:20
Alignment explanation
Indices: 27324013--27324052 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
27324003 AACGGTTTAA
27324013 AATTAATGATGATAAAAGAG
1 AATTAATGATGATAAAAGAG
27324033 AATTAATGATGATAAAAGAG
1 AATTAATGATGATAAAAGAG
27324053 CTTTCTTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.55, C:0.00, G:0.20, T:0.25
Consensus pattern (20 bp):
AATTAATGATGATAAAAGAG
Found at i:27331475 original size:16 final size:17
Alignment explanation
Indices: 27331447--27331491 Score: 74
Period size: 17 Copynumber: 2.6 Consensus size: 17
27331437 ATAAGTTTAA
27331447 AAAAAATTAAAAATATTT
1 AAAAAA-TAAAAATATTT
27331465 AAAAAATAAAAATATTT
1 AAAAAATAAAAATATTT
27331482 -AAAAATAAAA
1 AAAAAATAAAA
27331492 GATTAAAAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 10 0.37
17 11 0.41
18 6 0.22
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (17 bp):
AAAAAATAAAAATATTT
Found at i:27331484 original size:10 final size:10
Alignment explanation
Indices: 27331442--27331488 Score: 55
Period size: 10 Copynumber: 5.0 Consensus size: 10
27331432 TATATATAAG
*
27331442 TTTAAAAAAA
1 TTTAAAAATA
*
27331452 ATTAAAAATA
1 TTTAAAAATA
27331462 TTTAAAAA-A
1 TTTAAAAATA
27331471 --TAAAAATA
1 TTTAAAAATA
27331479 TTTAAAAATA
1 TTTAAAAATA
27331489 AAAGATTAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
7 6 0.19
8 1 0.03
9 1 0.03
10 23 0.74
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (10 bp):
TTTAAAAATA
Found at i:27335360 original size:171 final size:170
Alignment explanation
Indices: 27335072--27335518 Score: 725
Period size: 171 Copynumber: 2.6 Consensus size: 170
27335062 CGGTATGGAG
* * * *
27335072 TACAATTTATTTTTAATTTGAAGTTTGGATTTCGGACCTTCGTTTAGGGAAATAAATGAATTACT
1 TACAATTTATTTTTAGTTTGAAGTTTGGATTTCGGACCTTTGTTTAGGGAAATGAATGAATCACT
* *
27335137 GGAACATTTTCAAATATTTATAGTGTTCCAATAACTATAAGTATTCCAATACTTGTTGTAACCTC
66 -GAACGTTTTCAAATATTTATAGTGTTCCAATAACTATAAGTATTCCAATACTTATTGTAACCTC
* * *
27335202 TAGTAATATTATTTTCGTCATATGATATGGCGTCTTGCAAT
130 TAGTAATATTATTTTCATCATAAGATATGGAGTCTTGCAAT
*
27335243 TACAATTTATTTTTAGTTTGAAGTTTGGATTTCGGACCTTTGTTTTGGGAAATGAATGAATCACT
1 TACAATTTATTTTTAGTTTGAAGTTTGGATTTCGGACCTTTGTTTAGGGAAATGAATGAATCACT
* *
27335308 AGAACGTTTTCAAATATTTATAGTGTTCCAATAACTATAAGTGTTTCAATACTTATTGTAACCTC
66 -GAACGTTTTCAAATATTTATAGTGTTCCAATAACTATAAGTATTCCAATACTTATTGTAACCTC
*
27335373 TCGTAATATTATTTTCATCATAAGATATGGAGTCTTGCAAT
130 TAGTAATATTATTTTCATCATAAGATATGGAGTCTTGCAAT
*
27335414 TACAATTTATTTTTAGTTCT-AAGTTTAGATTTCGGACCTTTGTTTAGGGAAATGAATGAATCAC
1 TACAATTTATTTTTAGTT-TGAAGTTTGGATTTCGGACCTTTGTTTAGGGAAATGAATGAATCAC
27335478 TGCAACGTTTTCAAATATTTATAGTGTTCCAATAACTATAA
65 TG-AACGTTTTCAAATATTTATAGTGTTCCAATAACTATAA
27335519 ATGAATGGGT
Statistics
Matches: 258, Mismatches: 16, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
170 1 0.00
171 256 0.99
172 1 0.00
ACGTcount: A:0.31, C:0.13, G:0.15, T:0.42
Consensus pattern (170 bp):
TACAATTTATTTTTAGTTTGAAGTTTGGATTTCGGACCTTTGTTTAGGGAAATGAATGAATCACT
GAACGTTTTCAAATATTTATAGTGTTCCAATAACTATAAGTATTCCAATACTTATTGTAACCTCT
AGTAATATTATTTTCATCATAAGATATGGAGTCTTGCAAT
Found at i:27337915 original size:14 final size:14
Alignment explanation
Indices: 27337879--27337918 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
27337869 ATGAATATTG
27337879 ATAT-GATAGG-AA
1 ATATCGATAGGAAA
27337891 A-ATCG-TAGGAAA
1 ATATCGATAGGAAA
27337903 ATATCGATAGGAAA
1 ATATCGATAGGAAA
27337917 AT
1 AT
27337919 TTTACCGATT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
11 6 0.25
12 5 0.21
13 4 0.17
14 9 0.38
ACGTcount: A:0.50, C:0.05, G:0.23, T:0.23
Consensus pattern (14 bp):
ATATCGATAGGAAA
Found at i:27341700 original size:356 final size:356
Alignment explanation
Indices: 27341047--27341762 Score: 1351
Period size: 356 Copynumber: 2.0 Consensus size: 356
27341037 CGTCACCTAA
*
27341047 AGGCACAACCTTGAAATACAAGCCACTTAACAACACCTATTGACACCTTGAGCTATAGACGATTT
1 AGGCACAACCTTGAAATACAAGCCACTTAACAACACCTATTGACACCCTGAGCTATAGACGATTT
*
27341112 CTTGCAACTCGCTCAAAATTTTATTTCTCAATAATCCTCTCAATATTTTGCAATGAGTTATAAAG
66 CTTGCAACTCGCTCAAAATTTTATTTCTCAATAATCCTCTCAATATTTTGCAAGGAGTTATAAAG
*
27341177 ATCAAGATAATTTTTCATAGCATTCTTATGTAAAGAATTTGCATCCTTACCCACATGAGTAACAA
131 ATCAAGATAATTTTTCATAGCATTCTTATGTAAAGAATTTGCATCCTTAACCACATGAGTAACAA
27341242 AAGGACATTTAGATCCTTCATTGACCTTCTTTCATGATCGAAATCCTTGGCTTGTAAAAGTATTT
196 AAGGACATTTAGATCCTTCATTGACCTTCTTTCATGATCGAAATCCTTGGCTTGTAAAAGTATTT
*
27341307 CAATGATCCCAAATGGCTTGTTGAAGAGAAAACAAAGAACGAAATTCCAAAATAACATTCTAGAA
261 CAATGATCCCAAATGGCTTGTTGAAGAGAAAACAAAGAACGAAATACCAAAATAACATTCTAGAA
27341372 ATTCAAATTTTGATGAAGGTATCAATACCTT
326 ATTCAAATTTTGATGAAGGTATCAATACCTT
*
27341403 AGGCACAACCTTGAAATACAAGCCACTTAACAACACCTATTGACACCCTGAGCTATAGCCGATTT
1 AGGCACAACCTTGAAATACAAGCCACTTAACAACACCTATTGACACCCTGAGCTATAGACGATTT
* *
27341468 CTTGCAACTCGCTCAGAATTTTGTTTCTCAATAATCCTCTCAATATTTTGCAAGGAGTTATAAAG
66 CTTGCAACTCGCTCAAAATTTTATTTCTCAATAATCCTCTCAATATTTTGCAAGGAGTTATAAAG
27341533 ATCAAGATAATTTTTCATAGCATTCTTATGTAAAGAATTTGCATCCTTAACCACATGAGTAACAA
131 ATCAAGATAATTTTTCATAGCATTCTTATGTAAAGAATTTGCATCCTTAACCACATGAGTAACAA
27341598 AAGGACATTTAGATCCTTCATTGACCTTCTTTCATGATCGAAATCCTTGGCTTGTAAAAGTATTT
196 AAGGACATTTAGATCCTTCATTGACCTTCTTTCATGATCGAAATCCTTGGCTTGTAAAAGTATTT
* *
27341663 CAATGATCCCAAATGGCTTTTTGAAGAGAAAACAAAGAACGAAATACCAAAATAACATTCTAGTA
261 CAATGATCCCAAATGGCTTGTTGAAGAGAAAACAAAGAACGAAATACCAAAATAACATTCTAGAA
27341728 ATTCAAATTTTGATGAAGGTATCAATACCTT
326 ATTCAAATTTTGATGAAGGTATCAATACCTT
27341759 AGGC
1 AGGC
27341763 CTAGGTATCG
Statistics
Matches: 351, Mismatches: 9, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
356 351 1.00
ACGTcount: A:0.36, C:0.20, G:0.13, T:0.31
Consensus pattern (356 bp):
AGGCACAACCTTGAAATACAAGCCACTTAACAACACCTATTGACACCCTGAGCTATAGACGATTT
CTTGCAACTCGCTCAAAATTTTATTTCTCAATAATCCTCTCAATATTTTGCAAGGAGTTATAAAG
ATCAAGATAATTTTTCATAGCATTCTTATGTAAAGAATTTGCATCCTTAACCACATGAGTAACAA
AAGGACATTTAGATCCTTCATTGACCTTCTTTCATGATCGAAATCCTTGGCTTGTAAAAGTATTT
CAATGATCCCAAATGGCTTGTTGAAGAGAAAACAAAGAACGAAATACCAAAATAACATTCTAGAA
ATTCAAATTTTGATGAAGGTATCAATACCTT
Found at i:27347097 original size:182 final size:180
Alignment explanation
Indices: 27346857--27347195 Score: 466
Period size: 182 Copynumber: 1.9 Consensus size: 180
27346847 TATGGCAAAT
* *
27346857 CTTATCTCCCTAAAGTTGCAGCGAAGCAGATTAAGTCACTAATCTTACCCCCTGAAGTTAT-AGT
1 CTTATCTCCCTAAAGTTGCAGCGAAGCAGATTAAGTCACCAATCTTACCCCCTGAAGTT-TCACT
* **
27346921 GGGGTAGATTGCAGTTACAAGT-TTGATCTCCCTGAAGATGAAGTGGAGCAGACTGAAGATAGCA
65 AGGGTAGATTAAAGTTACAAGTCTT-ATCTCCCTGAAGATGAAGTGGAGCAGACTGAAGATAGCA
* *
27346985 AGTCTCATTTCCCTGAAGTTGCAGTGGAATAGATTAAGGCTAAATTACAGAC
129 AATCTCATGTCCCTGAAGTTGCAGTGGAATAGATTAAGGCTAAATTACAGAC
* * * * * * *
27347037 CTTATCTCCCTGAATTTGTAGTGGAGCAGGTTAAAGTCACCAATCTTATTCCCCTGAAGTTTCAC
1 CTTATCTCCCTAAAGTTGCAGCGAAGCAGATT-AAGTCACCAATCTTA-CCCCCTGAAGTTTCAC
* * *
27347102 TAGGGTAGATTAAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCA
64 TAGGGTAGATTAAAGTTACAAGTCTTATCTCCCTGAAGATGAAGTGGAGCAGACTGAAGATAGCA
*
27347167 AATCTTATGTCCCTGAAGTTGCAGTGGAA
129 AATCTCATGTCCCTGAAGTTGCAGTGGAA
27347196 CAAATTGAAG
Statistics
Matches: 137, Mismatches: 18, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
180 26 0.19
181 15 0.11
182 94 0.69
183 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (180 bp):
CTTATCTCCCTAAAGTTGCAGCGAAGCAGATTAAGTCACCAATCTTACCCCCTGAAGTTTCACTA
GGGTAGATTAAAGTTACAAGTCTTATCTCCCTGAAGATGAAGTGGAGCAGACTGAAGATAGCAAA
TCTCATGTCCCTGAAGTTGCAGTGGAATAGATTAAGGCTAAATTACAGAC
Found at i:27347154 original size:44 final size:44
Alignment explanation
Indices: 27346856--27347514 Score: 335
Period size: 44 Copynumber: 14.8 Consensus size: 44
27346846 TTATGGCAAA
* * * *
27346856 TCTTATCTCCCTAAAGTTGCAGCGAAGCAGATT-AAGTCACTAA-
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAC-AAG
* ** * * *
27346899 TCTTA-CCCCCTGAAGTTATAGTGGGGTAGATTGCAGTTACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAG
* * * *
27346942 T-TTGATCTCCCTGAAGATGAAGTGGAGCAGACTGAAGATAGCAAG
1 TCTT-ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-CAAG
* * ** *
27346987 TCTCATTTCCCTGAAGTTGCAGTGGAATAGATTAAGGCTAAATTAC-AG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT---G--AAGTTACAAG
* * * * * *
27347035 ACCTTATCTCCCTGAATTTGTAGTGGAGCAGGTTAAAGTCACCAA-
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-CAAG
* * * *
27347080 TCTTAT-TCCCCTGAAGTTTCACTAGG-GTAGATTAAAGTTACAAG
1 TCTTATCT-CCCTGAAGTTGCAGT-GGAGCAGATTGAAGTTACAAG
* * * *
27347124 TCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-CAAG
* * * *
27347169 TCTTATGTCCCTGAAGTTGCAGTGGAACAAATTGAAGCTATAAATTACAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-T-T--A-CA-AG
* ** ** * *
27347219 ATCTTATATCTTTGAAGTTTTAGTAGAGC-G-TAT-CA--TATCAA-
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT-TGAAGTTA-CAAG
* * *
27347260 ACATTATCTCCCTGAAGTTGTAGTGGAGCAGGTTGAAGTTACAAG
1 TC-TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAG
* * * * * *
27347305 TCTTATCTCCCTGAAGTTGTAGTGGAGTAAACTGAAGATACAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAG
* * * * *
27347349 TCTTATCCCCCTAAATTTGCAATAGG-GCAGATTGAAGCTACAAG
1 TCTTATCTCCCTGAAGTTGCAGT-GGAGCAGATTGAAGTTACAAG
* * *
27347393 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATATCTAAC
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-C-AAG
* * * * *
27347439 T-TTATCTCTCTGAAGTTACAGTGGAGCAGGTTAAAGTTTCTAA-
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAC-AAG
* * *
27347482 TCCTATCTCCCTGAAGTTGCACTGGAACAGATT
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
27347515 AAAATGATGA
Statistics
Matches: 463, Mismatches: 114, Indels: 77
0.71 0.17 0.12
Matches are distributed among these distances:
40 1 0.00
41 21 0.05
42 26 0.06
43 26 0.06
44 218 0.47
45 105 0.23
46 5 0.01
47 1 0.00
48 3 0.01
49 30 0.06
50 6 0.01
51 21 0.05
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAG
Found at i:27348701 original size:5 final size:5
Alignment explanation
Indices: 27348691--27348725 Score: 70
Period size: 5 Copynumber: 7.0 Consensus size: 5
27348681 TTGGCCCTTC
27348691 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT
27348726 TTCTTGTAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:27348935 original size:26 final size:26
Alignment explanation
Indices: 27348906--27348984 Score: 97
Period size: 26 Copynumber: 3.1 Consensus size: 26
27348896 GTCATGGAGG
*
27348906 TTATTTATTTTAAATTGTTGTGTATA
1 TTATTTATTTTAAATTGTTGTGCATA
* * *
27348932 TTATTCATTTTAATTTGTTTTGCATA
1 TTATTTATTTTAAATTGTTGTGCATA
**
27348958 TTATTTACCTTAAATTGTTGTGC-TA
1 TTATTTATTTTAAATTGTTGTGCATA
27348983 TT
1 TT
27348985 TACTTTAAAA
Statistics
Matches: 44, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
25 4 0.09
26 40 0.91
ACGTcount: A:0.24, C:0.06, G:0.10, T:0.59
Consensus pattern (26 bp):
TTATTTATTTTAAATTGTTGTGCATA
Found at i:27354238 original size:40 final size:40
Alignment explanation
Indices: 27354185--27354879 Score: 654
Period size: 40 Copynumber: 16.9 Consensus size: 40
27354175 GTGTTTTTAG
*
27354185 TCTGCTCTACTACTGCTTAGGGAGATAAGACTGGATGTGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGTGA
* * *
27354225 TCTACTCCACTACTGCTTAGGG-GAATAAGATCTGTGGTTCTG-
1 TCTGCTCCACTACTGCTTAGGGAG-ATAAGA-C--TGGATGTGA
* * * * *
27354267 TCTGCTCCACTATTGCTTAGAGAGATAAGAGTTGATGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGTGA
* * *
27354307 TCTGCTCCACTGCTGCTTAGGGAGATAAGATCTGTGGTTCTG-
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-C--TGGATGTGA
* * * * *
27354349 TCTGCTCCACTATTGCTTAGAGAGATAAGAGTTGATGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGTGA
* * *
27354389 TCTGCTCCACTGCTGCTTAGGGAGATAAGATCTGTGGTTCTG-
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-C--TGGATGTGA
* * *
27354431 TCTGCTCCACTATTGCTTAGGGAGATAAGACTTGATGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGTGA
* *
27354471 TCTGCTCCACTATTGCTTAGGGAGATAAGA-T--ATGTGGT
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGT-GA
* * * *
27354509 TCTGTCTATTCCACTATTGCTTAGAGAGATAAGACTTGATGCGA
1 TCTG-C---TCCACTACTGCTTAGGGAGATAAGACTGGATGTGA
*
27354553 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGTGA
* * *
27354593 TCTGCTCCACTGCTGCTTAGGGAGATAAGATCTGGTTTCTTTTG-
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CTGG----ATGTGA
*
27354637 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGTGA
* * *
27354677 TCTGCTCCACTGCTGCTTAGGGAGATAAGATCTGGTTTCTTTTG-
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CTGG----ATGTGA
*
27354721 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGTGA
* * *
27354761 TCTGCTCCACTGCTGCTTAGGGAGATAAGATCTGGTTTCTTTTG-
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CTGG----ATGTGA
*
27354805 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGTGA
*
27354845 TCTGCTCCACTGCTGCTTAGGGAGATAAGATCTGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CTGG
27354880 TTTCTGTCTA
Statistics
Matches: 538, Mismatches: 76, Indels: 81
0.77 0.11 0.12
Matches are distributed among these distances:
37 3 0.01
38 5 0.01
39 24 0.04
40 258 0.48
41 14 0.03
42 104 0.19
43 26 0.05
44 92 0.17
45 12 0.02
ACGTcount: A:0.22, C:0.20, G:0.25, T:0.33
Consensus pattern (40 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGTGA
Found at i:27354284 original size:82 final size:79
Alignment explanation
Indices: 27354184--27354879 Score: 707
Period size: 82 Copynumber: 8.4 Consensus size: 79
27354174 TGTGTTTTTA
* * *
27354184 GTCTGCTCTACTACTGCTTAGGGAGATAAGACTGGATGTGATCTACTCCACTACTGCTTAGGG-G
1 GTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTGCTCCACTACTGCTTAGGGAG
*
27354248 AATAAGATCTGTGGTTCT
66 -ATAAGA-CT-T-GATCT
* * * * *
27354266 GTCTGCTCCACTATTGCTTAGAGAGATAAGAGTTGATGCGATCTGCTCCACTGCTGCTTAGGGAG
1 GTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTGCTCCACTACTGCTTAGGGAG
*
27354331 ATAAGATCTGTGGTTCT
66 ATAAGA-CT-T-GATCT
* * * * *
27354348 GTCTGCTCCACTATTGCTTAGAGAGATAAGAGTTGATGCGATCTGCTCCACTGCTGCTTAGGGAG
1 GTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTGCTCCACTACTGCTTAGGGAG
*
27354413 ATAAGATCTGTGGTTCT
66 ATAAGA-CT-T-GATCT
* * *
27354430 GTCTGCTCCACTATTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTATTGCTTAGGGAG
1 GTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTGCTCCACTACTGCTTAGGGAG
* *
27354495 ATAAGATATGTGGTTCT
66 ATAAGA-CT-T-GATCT
** * * *
27354512 GTCTATTCCACTATTGCTTAGAGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAG
1 GTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTGCTCCACTACTGCTTAGGGAG
*
27354577 ATAAGACTTGATGT
66 ATAAGACTTGATCT
* * *
27354591 GATCTGCTCCACTGCTGCTTAGGGAGATAAGATCTGGTTTCTTTTG-TCTGCTCCACTACTGCTT
1 G-TCTGCTCCACTACTGCTTAGGGAGATAAGA-CTGGATGC----GATCTGCTCCACTACTGCTT
*
27354655 AGGGAGATAAGACTTGATGT
60 AGGGAGATAAGACTTGATCT
* * *
27354675 GATCTGCTCCACTGCTGCTTAGGGAGATAAGATCTGGTTTCTTTTG-TCTGCTCCACTACTGCTT
1 G-TCTGCTCCACTACTGCTTAGGGAGATAAGA-CTGGATGC----GATCTGCTCCACTACTGCTT
*
27354739 AGGGAGATAAGACTTGATGT
60 AGGGAGATAAGACTTGATCT
* * *
27354759 GATCTGCTCCACTGCTGCTTAGGGAGATAAGATCTGGTTTCTTTTG-TCTGCTCCACTACTGCTT
1 G-TCTGCTCCACTACTGCTTAGGGAGATAAGA-CTGGATGC----GATCTGCTCCACTACTGCTT
*
27354823 AGGGAGATAAGACTTGATGT
60 AGGGAGATAAGACTTGATCT
*
27354843 GATCTGCTCCACTGCTGCTTAGGGAGATAAGATCTGG
1 G-TCTGCTCCACTACTGCTTAGGGAGATAAGA-CTGG
27354880 TTTCTGTCTA
Statistics
Matches: 579, Mismatches: 28, Indels: 12
0.94 0.05 0.02
Matches are distributed among these distances:
79 4 0.01
80 26 0.04
81 6 0.01
82 298 0.51
83 1 0.00
84 243 0.42
85 1 0.00
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.33
Consensus pattern (79 bp):
GTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTGCTCCACTACTGCTTAGGGAG
ATAAGACTTGATCT
Found at i:27354658 original size:84 final size:84
Alignment explanation
Indices: 27354553--27354884 Score: 664
Period size: 84 Copynumber: 4.0 Consensus size: 84
27354543 CTTGATGCGA
27354553 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGATCTGCTCCACTGCTGCTTAGGGAGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGATCTGCTCCACTGCTGCTTAGGGAGA
27354618 TAAGATCTGGTTTCTTTTG
66 TAAGATCTGGTTTCTTTTG
27354637 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGATCTGCTCCACTGCTGCTTAGGGAGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGATCTGCTCCACTGCTGCTTAGGGAGA
27354702 TAAGATCTGGTTTCTTTTG
66 TAAGATCTGGTTTCTTTTG
27354721 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGATCTGCTCCACTGCTGCTTAGGGAGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGATCTGCTCCACTGCTGCTTAGGGAGA
27354786 TAAGATCTGGTTTCTTTTG
66 TAAGATCTGGTTTCTTTTG
27354805 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGATCTGCTCCACTGCTGCTTAGGGAGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGATCTGCTCCACTGCTGCTTAGGGAGA
27354870 TAAGATCTGGTTTCT
66 TAAGATCTGGTTTCT
27354885 GTCTACTAGA
Statistics
Matches: 248, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
84 248 1.00
ACGTcount: A:0.20, C:0.20, G:0.25, T:0.34
Consensus pattern (84 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGATCTGCTCCACTGCTGCTTAGGGAGA
TAAGATCTGGTTTCTTTTG
Found at i:27355104 original size:100 final size:99
Alignment explanation
Indices: 27354892--27355120 Score: 266
Period size: 100 Copynumber: 2.3 Consensus size: 99
27354882 TCTGTCTACT
* * **
27354892 AGAGAAGTGAGATTCACCGTTGTGGCTTCAATCTGATTAATTGCAATGTCGGGGAACAAGATCCG
1 AGAGAAGTGAGATTCGCCGTTGTGGCTTCAATCTGATTAATTGCAATATCAAGGAACAAGATCCG
* *
27354957 TCGTTGTAGCTTCAATCTGATCCACTGCATCGCC
66 CCGTCGTAGCTTCAATCTGATCCACTGCATCGCC
* * *
27354991 A-AGAAAGTAAGATTCGCCGTTGCGGCTTCAATCT-TTTAAATTGCAATATCAAGGAAGCAAGAT
1 AGAG-AAGTGAGATTCGCCGTTGTGGCTTCAATCTGATT-AATTGCAATATCAAGGAA-CAAGAT
* * * * *
27355054 TCGCCGTCGTAGCTTTAATCTGCTGCACTGTA-CTGCC
63 CCGCCGTCGTAGCTTCAATCTGATCCACTGCATC-GCC
*
27355091 AGAGAAGTGAGATTCGCCATTGTGGCTTCA
1 AGAGAAGTGAGATTCGCCGTTGTGGCTTCA
27355121 CGGGGAACAA
Statistics
Matches: 108, Mismatches: 17, Indels: 9
0.81 0.13 0.07
Matches are distributed among these distances:
98 4 0.04
99 44 0.41
100 58 0.54
101 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (99 bp):
AGAGAAGTGAGATTCGCCGTTGTGGCTTCAATCTGATTAATTGCAATATCAAGGAACAAGATCCG
CCGTCGTAGCTTCAATCTGATCCACTGCATCGCC
Found at i:27355184 original size:80 final size:81
Alignment explanation
Indices: 27355043--27355200 Score: 187
Period size: 80 Copynumber: 2.0 Consensus size: 81
27355033 GCAATATCAA
* * * * *
27355043 GGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTGCACTGTACTGCCAGAGAAGTGAGATTCGC
1 GGAAGCAAGATTCGCCGTCGTAGCTTCAATCTGATCCACTGCACTGCCAGAGAAGTAAGATTCGC
*
27355108 CATTGTGGCTTCACGG
66 CATTGCGGCTTCACGG
* * *
27355124 GGAA-CAAGATTTGCTGTTGTAGCTTCAATCTGATCCACTGCA-TCGCCAG-GAAAGTAAGATTC
1 GGAAGCAAGATTCGCCGTCGTAGCTTCAATCTGATCCACTGCACT-GCCAGAG-AAGTAAGATTC
*
27355186 GCCGTTGCGGCTTCA
64 GCCATTGCGGCTTCA
27355201 ATCTTCTTAA
Statistics
Matches: 65, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
79 2 0.03
80 59 0.91
81 4 0.06
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (81 bp):
GGAAGCAAGATTCGCCGTCGTAGCTTCAATCTGATCCACTGCACTGCCAGAGAAGTAAGATTCGC
CATTGCGGCTTCACGG
Found at i:27355204 original size:50 final size:49
Alignment explanation
Indices: 27355129--27355669 Score: 229
Period size: 50 Copynumber: 10.9 Consensus size: 49
27355119 CACGGGGAAC
* * * *
27355129 AAGATTTGCTGTTGTAGCTTCAATCTGATCCACTGCATCGCCAGGAAAGT
1 AAGATTCGCCGTTGTAGCTTCAATCTGCTCAACTGCAT-GCCAGGAAAGT
** * * * ** *
27355179 AAGATTCGCCGTTGCGGCTTCAATCTTCTTAATTGCAATATCA-GAGAAGC
1 AAGATTCGCCGTTGTAGCTTCAATCTGCTCAACTGC-ATGCCAGGA-AAGT
* * * * * **
27355229 AAGATTCGCCATCGTAGCTTTAATCTGCTCTACTGTACTGCCAAAAAAGT
1 AAGATTCGCCGTTGTAGCTTCAATCTGCTCAACTGCA-TGCCAGGAAAGT
* * * * * * * * *
27355279 GAGATTTGCCGTTGTGGCTTCAATCT-CTTTAATTGCAATGTCGGGGAA-C
1 AAGATTCGCCGTTGTAGCTTCAATCTGC-TCAACTGC-ATGCCAGGAAAGT
* * * *
27355328 AAGATT-ACCGTTGTAGCTTCAATCTGATCCACTGCATCGCTAGGAAAGT
1 AAGATTCGCCGTTGTAGCTTCAATCTGCTCAACTGCAT-GCCAGGAAAGT
* * * * * * ** *
27355377 AAGATTCGTCGTTGCAGTTTCAATCTTCTTAATTGCAATATCA-GAGAAGC
1 AAGATTCGCCGTTGTAGCTTCAATCTGCTCAACTGC-ATGCCAGGA-AAGT
* * * * **
27355427 AAGATTCGCCGTCGTAGCTTTAATCTGCTCTACTGTACTGCCAAAAAAGT
1 AAGATTCGCCGTTGTAGCTTCAATCTGCTCAACTGCA-TGCCAGGAAAGT
* * * * * * *
27355477 GAGATTCGCCGTTGTGGCTTCAATCT-CTTTAA-TAGCAATGTCGGGGAA-C
1 AAGATTCGCCGTTGTAGCTTCAATCTGC-TCAACT-GC-ATGCCAGGAAAGT
* * *
27355526 AAGATTCGCCGTTGTAGCTTCAATCTGATCCACTGCATTGCTAGGAAAGT
1 AAGATTCGCCGTTGTAGCTTCAATCTGCTCAACTGCA-TGCCAGGAAAGT
* * * * ** *
27355576 AAGATTCGCCGTTG-CGACTTCAATCTTCTTAATTGCAATATCA-GAGAAGC
1 AAGATTCGCCGTTGTAG-CTTCAATCTGCTCAACTGC-ATGCCAGGA-AAGT
* * * * *
27355626 AAGATTCGCCGTCGTTGCTTTAATCTGCTCCACTGTATCGCCAG
1 AAGATTCGCCGTTGTAGCTTCAATCTGCTCAACTGCAT-GCCAG
27355670 AGAGATAATG
Statistics
Matches: 340, Mismatches: 124, Indels: 53
0.66 0.24 0.10
Matches are distributed among these distances:
47 2 0.01
48 28 0.08
49 59 0.17
50 241 0.71
51 10 0.03
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (49 bp):
AAGATTCGCCGTTGTAGCTTCAATCTGCTCAACTGCATGCCAGGAAAGT
Found at i:27355246 original size:180 final size:181
Alignment explanation
Indices: 27354940--27355662 Score: 855
Period size: 198 Copynumber: 3.8 Consensus size: 181
27354930 AATTGCAATG
** *
27354940 TCGGGGAACAAGATCCG-TCGTTGTAGCTTCAATCTGATCCACTGCATCGCCAAGAAAGTAAGAT
1 TCGGGGAACAAGATTTGCT-GTTGTAGCTTCAATCTGATCCACTGCATCGCCAGGAAAGTAAGAT
27355004 TCGCCGTTGCGGCTTCAATCTT-TTAAATTGCAATATCA-AGGAAGCAAGATTCGCCGTCGTAGC
65 TCGCCGTTGCGGCTTCAATCTTCTT-AATTGCAATATCAGA-GAAGCAAGATTCGCCGTCGTAGC
* * *
27355067 TTTAATCTGCTGC-ACTGTACTGCCAGAGAAGTGAGATTCGCCATTGTGGCTTCA
128 TTTAATCTGCT-CTACTGTACTGCCAAAAAAGTGAGATTCGCCGTTGTGGCTTCA
27355121 -CGGGGAACAAGATTTGCTGTTGTAGCTTCAATCTGATCCACTGCATCGCCAGGAAAGTAAGATT
1 TCGGGGAACAAGATTTGCTGTTGTAGCTTCAATCTGATCCACTGCATCGCCAGGAAAGTAAGATT
*
27355185 CGCCGTTGCGGCTTCAATCTTCTTAATTGCAATATCAGAGAAGCAAGATTCGCCATCGTAGCTTT
66 CGCCGTTGCGGCTTCAATCTTCTTAATTGCAATATCAGAGAAGCAAGATTCGCCGTCGTAGCTTT
*
27355250 AATCTGCTCTACTGTACTGCCAAAAAAGTGAGATTTGCCGTTGTGGCTTCAATCTCTTTAATTGC
131 AATCTGCTCTACTGTACTGCCAAAAAAGTGAGATTCGCCGTTGTGG---------C-----TT-C
27355315 AA
181 -A
* * *
27355317 TGTCGGGGAACAAGA-TTACCGTTGTAGCTTCAATCTGATCCACTGCATCGCTAGGAAAGTAAGA
1 --TCGGGGAACAAGATTTGCTGTTGTAGCTTCAATCTGATCCACTGCATCGCCAGGAAAGTAAGA
* * *
27355381 TTCGTCGTTGCAGTTTCAATCTTCTTAATTGCAATATCAGAGAAGCAAGATTCGCCGTCGTAGCT
64 TTCGCCGTTGCGGCTTCAATCTTCTTAATTGCAATATCAGAGAAGCAAGATTCGCCGTCGTAGCT
27355446 TTAATCTGCTCTACTGTACTGCCAAAAAAGTGAGATTCGCCGTTGTGGCTTCAATCTCTTTAATA
129 TTAATCTGCTCTACTGTACTGCCAAAAAAGTGAGATTCGCCGTTGTGG---------C--T--T-
27355511 GCAA
180 -C-A
* * * *
27355515 TGTCGGGGAACAAGATTCGCCGTTGTAGCTTCAATCTGATCCACTGCATTGCTAGGAAAGTAAGA
1 --TCGGGGAACAAGATTTGCTGTTGTAGCTTCAATCTGATCCACTGCATCGCCAGGAAAGTAAGA
* *
27355580 TTCGCCGTTGCGACTTCAATCTTCTTAATTGCAATATCAGAGAAGCAAGATTCGCCGTCGTTGCT
64 TTCGCCGTTGCGGCTTCAATCTTCTTAATTGCAATATCAGAGAAGCAAGATTCGCCGTCGTAGCT
*
27355645 TTAATCTGCTCCACTGTA
129 TTAATCTGCTCTACTGTA
27355663 TCGCCAGAGA
Statistics
Matches: 488, Mismatches: 27, Indels: 36
0.89 0.05 0.07
Matches are distributed among these distances:
179 1 0.00
180 158 0.32
181 4 0.01
189 1 0.00
194 2 0.00
195 2 0.00
196 1 0.00
197 1 0.00
198 183 0.38
199 135 0.28
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (181 bp):
TCGGGGAACAAGATTTGCTGTTGTAGCTTCAATCTGATCCACTGCATCGCCAGGAAAGTAAGATT
CGCCGTTGCGGCTTCAATCTTCTTAATTGCAATATCAGAGAAGCAAGATTCGCCGTCGTAGCTTT
AATCTGCTCTACTGTACTGCCAAAAAAGTGAGATTCGCCGTTGTGGCTTCA
Found at i:27355477 original size:198 final size:197
Alignment explanation
Indices: 27355121--27355662 Score: 940
Period size: 198 Copynumber: 2.7 Consensus size: 197
27355111 TGTGGCTTCA
* *
27355121 CGGGGAACAAGATTTGCTGTTGTAGCTTCAATCTGATCCACTGCATCGCCAGGAAAGTAAGATTC
1 CGGGGAACAAGA-TTGCCGTTGTAGCTTCAATCTGATCCACTGCATCGCTAGGAAAGTAAGATTC
*
27355186 GCCGTTGCGGCTTCAATCTTCTTAATTGCAATATCAGAGAAGCAAGATTCGCCATCGTAGCTTTA
65 GCCGTTGC-GCTTCAATCTTCTTAATTGCAATATCAGAGAAGCAAGATTCGCCGTCGTAGCTTTA
* *
27355251 ATCTGCTCTACTGTACTGCCAAAAAAGTGAGATTTGCCGTTGTGGCTTCAATCTCTTTAATTGCA
129 ATCTGCTCTACTGTACTGCCAAAAAAGTGAGATTCGCCGTTGTGGCTTCAATCTCTTTAATAGCA
27355316 ATGT
194 ATGT
*
27355320 CGGGGAACAAGATTACCGTTGTAGCTTCAATCTGATCCACTGCATCGCTAGGAAAGTAAGATTCG
1 CGGGGAACAAGATTGCCGTTGTAGCTTCAATCTGATCCACTGCATCGCTAGGAAAGTAAGATTCG
* *
27355385 TCGTTGCAGTTTCAATCTTCTTAATTGCAATATCAGAGAAGCAAGATTCGCCGTCGTAGCTTTAA
66 CCGTTGC-GCTTCAATCTTCTTAATTGCAATATCAGAGAAGCAAGATTCGCCGTCGTAGCTTTAA
27355450 TCTGCTCTACTGTACTGCCAAAAAAGTGAGATTCGCCGTTGTGGCTTCAATCTCTTTAATAGCAA
130 TCTGCTCTACTGTACTGCCAAAAAAGTGAGATTCGCCGTTGTGGCTTCAATCTCTTTAATAGCAA
27355515 TGT
195 TGT
*
27355518 CGGGGAACAAGATTCGCCGTTGTAGCTTCAATCTGATCCACTGCATTGCTAGGAAAGTAAGATTC
1 CGGGGAACAAGATT-GCCGTTGTAGCTTCAATCTGATCCACTGCATCGCTAGGAAAGTAAGATTC
*
27355583 GCCGTTGCGACTTCAATCTTCTTAATTGCAATATCAGAGAAGCAAGATTCGCCGTCGTTGCTTTA
65 GCCGTTGCG-CTTCAATCTTCTTAATTGCAATATCAGAGAAGCAAGATTCGCCGTCGTAGCTTTA
*
27355648 ATCTGCTCCACTGTA
129 ATCTGCTCTACTGTA
27355663 TCGCCAGAGA
Statistics
Matches: 326, Mismatches: 15, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
198 192 0.59
199 134 0.41
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (197 bp):
CGGGGAACAAGATTGCCGTTGTAGCTTCAATCTGATCCACTGCATCGCTAGGAAAGTAAGATTCG
CCGTTGCGCTTCAATCTTCTTAATTGCAATATCAGAGAAGCAAGATTCGCCGTCGTAGCTTTAAT
CTGCTCTACTGTACTGCCAAAAAAGTGAGATTCGCCGTTGTGGCTTCAATCTCTTTAATAGCAAT
GT
Found at i:27358804 original size:62 final size:62
Alignment explanation
Indices: 27358703--27358889 Score: 259
Period size: 62 Copynumber: 3.0 Consensus size: 62
27358693 CTACACTCGA
* * * * *
27358703 CGTACTTTTT-GATTTTAGGAAACTTACTGTATGCAATGAAACGTAATGTTGATGCATGAATG
1 CGTA-TTTTTGGATTTTAAGAAATTTATTGCATGCAATGAAATGTAATGTTGATGCATGAATG
* *
27358765 CGTATTTTTGGATTTTAAGAAATTTATTGCATGCAATGAAATTTAATGTTGATGCATAAATG
1 CGTATTTTTGGATTTTAAGAAATTTATTGCATGCAATGAAATGTAATGTTGATGCATGAATG
* * * *
27358827 CGTATTTTTGTATTTTAAGAAATTTATTGCATGCGATGAAATGTAATGTTGTTGTATGAATG
1 CGTATTTTTGGATTTTAAGAAATTTATTGCATGCAATGAAATGTAATGTTGATGCATGAATG
27358889 C
1 C
27358890 AAAAAAAAGA
Statistics
Matches: 111, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
61 5 0.05
62 106 0.95
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (62 bp):
CGTATTTTTGGATTTTAAGAAATTTATTGCATGCAATGAAATGTAATGTTGATGCATGAATG
Found at i:27367309 original size:171 final size:171
Alignment explanation
Indices: 27367061--27367507 Score: 727
Period size: 171 Copynumber: 2.6 Consensus size: 171
27367051 CGGTATGGAG
* * **
27367061 TACAATTTATTTTTAGTTTGAAGTTTGGATTTCGGACCTTTGTTTAGGGAAATAAATAAATTTCT
1 TACAATTTATTTTTAGTTTGAAGTTTGGATTTCGGACCTTTGTTTAGGGAAATGAATGAATCACT
* *
27367126 GGAACATTTTCAAATATTTATAGTGTTCCAATAACTATAAGTGTTCCAATACTTATTGTAACCTC
66 AGAACATTTTCAAATATTTATAGTGTTCCAATAACTATAAGTCTTCCAATACTTATTGTAACCTC
* * *
27367191 TCGTAATATTATTTTCGTCATACGATATGGCGTTTTGCAAT
131 TCGTAATATTATTTTCATCATACGATATGGAGTCTTGCAAT
* *
27367232 TACAATTTATTTTTAGTTTGAAGTTTGGATTTCGGACCTTTGTTTTGGGAAATGAAGGAATCACT
1 TACAATTTATTTTTAGTTTGAAGTTTGGATTTCGGACCTTTGTTTAGGGAAATGAATGAATCACT
*
27367297 AGAACGTTTTCAAATATTTATAGTGTTCCAATAACTATAAGTCTTCCAATACTTATTGTAACCTC
66 AGAACATTTTCAAATATTTATAGTGTTCCAATAACTATAAGTCTTCCAATACTTATTGTAACCTC
*
27367362 TTGTAATATTATTTTCATCATACGATATGGAGTCTTGCAAT
131 TCGTAATATTATTTTCATCATACGATATGGAGTCTTGCAAT
* *
27367403 TACAATTTATTTTTAGTTCT-AAGTTTAGATTTCAGACCTTTGTTTAGGGAAATGAATGAATCAC
1 TACAATTTATTTTTAGTT-TGAAGTTTGGATTTCGGACCTTTGTTTAGGGAAATGAATGAATCAC
27367467 -AGCAACATTTTCAAATATTTATAGTGTTCCAATAACTATAA
65 TAG-AACATTTTCAAATATTTATAGTGTTCCAATAACTATAA
27367508 ATGAATGGGT
Statistics
Matches: 256, Mismatches: 18, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
170 2 0.01
171 253 0.99
172 1 0.00
ACGTcount: A:0.31, C:0.13, G:0.14, T:0.42
Consensus pattern (171 bp):
TACAATTTATTTTTAGTTTGAAGTTTGGATTTCGGACCTTTGTTTAGGGAAATGAATGAATCACT
AGAACATTTTCAAATATTTATAGTGTTCCAATAACTATAAGTCTTCCAATACTTATTGTAACCTC
TCGTAATATTATTTTCATCATACGATATGGAGTCTTGCAAT
Found at i:27369897 original size:14 final size:14
Alignment explanation
Indices: 27369861--27369900 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
27369851 ATGAATATTG
27369861 ATAT-GATAGG-AA
1 ATATCGATAGGAAA
27369873 A-ATCG-TAGGAAA
1 ATATCGATAGGAAA
27369885 ATATCGATAGGAAA
1 ATATCGATAGGAAA
27369899 AT
1 AT
27369901 TTTACCGATT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
11 6 0.25
12 5 0.21
13 4 0.17
14 9 0.38
ACGTcount: A:0.50, C:0.05, G:0.23, T:0.23
Consensus pattern (14 bp):
ATATCGATAGGAAA
Found at i:27373714 original size:21 final size:20
Alignment explanation
Indices: 27373675--27373715 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
27373665 TCAATAATTC
* *
27373675 ATTTCATATAAATCCAAAAT
1 ATTTCAAATAAAACCAAAAT
27373695 ATTTCAAATAAAAACCAAAAT
1 ATTTCAAAT-AAAACCAAAAT
27373716 TCTATAAACC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.56, C:0.15, G:0.00, T:0.29
Consensus pattern (20 bp):
ATTTCAAATAAAACCAAAAT
Found at i:27379014 original size:44 final size:45
Alignment explanation
Indices: 27378994--27379253 Score: 129
Period size: 45 Copynumber: 5.7 Consensus size: 45
27378984 TACAAGTTTG
27378994 ATCTCCCTGAAGATGCAGTGGAGCAGACTGAAGATAGCAAGTCTC
1 ATCTCCCTGAAGATGCAGTGGAGCAGACTGAAGATAGCAAGTCTC
* * * * * ** * *
27379039 ATTTCCCTGAAGTTGCAGTGGAACAGA-TTAAGGCTAAATTATAGACCTT
1 ATCTCCCTGAAGATGCAGTGGAGCAGACTGAA-G--ATAGCA-AG-TCTC
* * ** * * *
27379088 ATCTCCCTGAAGTTGTAGTGGAGCAGGTTAAAG-TCACCAA-TCTTA
1 ATCTCCCTGAAGATGCAGTGGAGCAGACTGAAGAT-AGCAAGTC-TC
* * * * * *
27379133 ATC-CCCTGAAGTTTCATTAGG-GCAGATTGAAGTTA-CAAGTCTT
1 ATCTCCCTGAAGATGCAGT-GGAGCAGACTGAAGATAGCAAGTCTC
* * *
27379176 ATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAAG-CTT
1 ATCTCCCTGAAGATGCAGTGGAGCAGACTGAAGATAGC-AAGTCTC
* * * *
27379221 ATGTCCCTGAAGTTGCAGTGGAACAGATTGAAG
1 ATCTCCCTGAAGATGCAGTGGAGCAGACTGAAG
27379254 CTATAAATTA
Statistics
Matches: 166, Mismatches: 34, Indels: 30
0.72 0.15 0.13
Matches are distributed among these distances:
43 9 0.05
44 52 0.31
45 65 0.39
46 4 0.02
47 5 0.03
48 2 0.01
49 26 0.16
50 3 0.02
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.27
Consensus pattern (45 bp):
ATCTCCCTGAAGATGCAGTGGAGCAGACTGAAGATAGCAAGTCTC
Found at i:27379210 original size:182 final size:180
Alignment explanation
Indices: 27378904--27379396 Score: 572
Period size: 181 Copynumber: 2.7 Consensus size: 180
27378894 TATGGCAAAT
* * * * *
27378904 CTTATCTCCCTAAAGTTACAGCGAAGCAGATTAAAGTCACTAATCTTACCCCCTGAAGTTAT-AG
1 CTTATCTCCCTGAAGTTATAGTGGAGCAGATTAAAGTCAC-AATCTTATCCCCTGAAGTT-TCAG
* * * *
27378968 TGGGGTAGATTGCAGTTACAAGT-TTGATCTCCCTGAAGATGCAGTGGAGCAGACTGAAGATAGC
64 T-GGGCAGATTGAAGTTACAAGTCTT-ATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGC
* *
27379032 -AAGTCTCATTTCCCTGAAGTTGCAGTGGAACAGATT-AAGGC-TAAATTATAGAC
127 AAAG-CTCATGTCCCTGAAGTTGCAGTGGAACAGATTGAA-GCATAAATTACAGAC
* * *
27379085 CTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTAAAGTCACCAATCTTAATCCCCTGAAGTTTCAT
1 CTTATCTCCCTGAAGTTATAGTGGAGCAGATTAAAGTCA-CAATCTT-ATCCCCTGAAGTTTCAG
27379150 TAGGGCAGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCA
64 T-GGGCAGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCA
* *
27379215 AAGCTTATGTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAATTACAGAT
128 AAGCTCATGTCCCTGAAGTTGCAGTGGAACAGATTGAAGC-ATAAATTACAGAC
* ** * * * * * *
27379269 CTTATATCATTGAAGTTTTAGTAGAGTAGATCATA-TCA-AA-CATTATCTCCCTGAAGTTACAG
1 CTTATCTCCCTGAAGTTATAGTGGAGCAGATTAAAGTCACAATC-TTATC-CCCTGAAGTTTCAG
*
27379331 TGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATA-CA
64 TGG-GCAGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCA
27379395 AA
128 AA
27379397 TCTTATCCCC
Statistics
Matches: 272, Mismatches: 29, Indels: 23
0.84 0.09 0.07
Matches are distributed among these distances:
180 10 0.04
181 114 0.42
182 102 0.38
183 10 0.04
184 36 0.13
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (180 bp):
CTTATCTCCCTGAAGTTATAGTGGAGCAGATTAAAGTCACAATCTTATCCCCTGAAGTTTCAGTG
GGCAGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAAG
CTCATGTCCCTGAAGTTGCAGTGGAACAGATTGAAGCATAAATTACAGAC
Found at i:27379237 original size:45 final size:44
Alignment explanation
Indices: 27378954--27379512 Score: 298
Period size: 44 Copynumber: 12.4 Consensus size: 44
27378944 TAATCTTACC
** * * * *
27378954 CCCTGAAGTTATAGTGGGGTAGATTGCAGTTAC-AAGTTTGATCT
1 CCCTGAAGTTGCAGTGGAGTAGATTGAAGATACAAAGCTT-ATCT
* * * * *
27378998 CCCTGAAGATGCAGTGGAGCAGACTGAAGATAGC-AAGTCTCATTT
1 CCCTGAAGTTGCAGTGGAGTAGATTGAAGATA-CAAAG-CTTATCT
** * *
27379043 CCCTGAAGTTGCAGTGGAACAGATT-AAGGCTAAATTATAGACCTTATCT
1 CCCTGAAGTTGCAGTGGAGTAGATTGAA-GATACA--A-AG--CTTATCT
* * * * * *
27379092 CCCTGAAGTTGTAGTGGAGCAGGTTAAAG-TCACCAATCTTAATC-
1 CCCTGAAGTTGCAGTGGAGTAGATTGAAGAT-ACAAAGCTT-ATCT
* * * *
27379136 CCCTGAAGTTTCATTAGG-GCAGATTGAAGTTAC-AAGTCTTATCT
1 CCCTGAAGTTGCAGT-GGAGTAGATTGAAGATACAAAG-CTTATCT
* *
27379180 CCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAAGCTTATGT
1 CCCTGAAGTTGCAGTGGAGTAGATTGAAGATA-CAAAGCTTATCT
** * *
27379225 CCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAATTACAGATCTTATAT
1 CCCTGAAGTTGCAGTGGAGTAGATTGAAG--ATACA--A-AG--CTTATCT
** ** * * *
27379276 CATTGAAGTTTTAGTAGAGTAGA-T-CATAT-CAAA-CATTATCT
1 CCCTGAAGTTGCAGTGGAGTAGATTGAAGATACAAAGC-TTATCT
* * * *
27379317 CCCTGAAGTTACAGTGGAGCAGGTTGAAGTTAC-AAGTCTTATCT
1 CCCTGAAGTTGCAGTGGAGTAGATTGAAGATACAAAG-CTTATCT
* * *
27379361 CCCTGAAGTTGCAGTGGAGTAGACTGAAGATACAAATCTTATCC
1 CCCTGAAGTTGCAGTGGAGTAGATTGAAGATACAAAGCTTATCT
* * * * * *
27379405 CCCTAAATTTGCAATGGGGTAGATTAAAGCTAC-AAGTCTTATCT
1 CCCTGAAGTTGCAGTGGAGTAGATTGAAGATACAAAG-CTTATCT
* * *
27379449 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATATCTAACCTTATCT
1 CCCTGAAGTTGCAGTGGAGTAGATTGAAGATA-CAAAGCTTATCT
**
27379494 CCCTGAAGTTATAGTGGAG
1 CCCTGAAGTTGCAGTGGAG
27379513 CAGGCTAAAG
Statistics
Matches: 391, Mismatches: 89, Indels: 69
0.71 0.16 0.13
Matches are distributed among these distances:
40 1 0.00
41 21 0.05
42 1 0.00
43 14 0.04
44 178 0.46
45 99 0.25
46 9 0.02
47 7 0.02
48 4 0.01
49 32 0.08
50 3 0.01
51 22 0.06
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.29
Consensus pattern (44 bp):
CCCTGAAGTTGCAGTGGAGTAGATTGAAGATACAAAGCTTATCT
Found at i:27379380 original size:181 final size:180
Alignment explanation
Indices: 27378928--27379402 Score: 563
Period size: 182 Copynumber: 2.6 Consensus size: 180
27378918 GTTACAGCGA
* * * * *
27378928 AGCAGATTAAAGTCACTAATCTT-ACCCCCTGAAGTTATAGTGGGGTAGATTGCAGTTACAAGT-
1 AGCAGATCAAAGTCAC-AATCTTAATCCCCTGAAGTTACAGT-GGGCAGATTGAAGTTACAAGTC
* * * *
27378991 TTGATCTCCCTGAAGATGCAGTGGAGCAGACTGAAGATAGC-AAGTCTCATTTCCCTGAAGTTGC
64 TT-ATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAAG-CTTATGTCCCTGAAGTTGC
* * * *
27379055 AGTGGAACAGATTAAGGCTAAATTATAGACCTTATCTCCCTGAAGTTGTAGTGG
127 AGTGGAACAGATTAAGGCTAAATTACAGACCTTATATCACTGAAGTTGTAGTAG
* * * *
27379109 AGCAGGTTAAAGTCACCAATCTTAATCCCCTGAAGTTTCATTAGGGCAGATTGAAGTTACAAGTC
1 AGCAGATCAAAGTCA-CAATCTTAATCCCCTGAAGTTACAGT-GGGCAGATTGAAGTTACAAGTC
27379174 TTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAAGCTTATGTCCCTGAAGTTGCAG
64 TTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAAGCTTATGTCCCTGAAGTTGCAG
* * *
27379239 TGGAACAGATTGAA-GCTATAAATTACAGATCTTATATCATTGAAGTTTTAGTAG
129 TGGAACAGATT-AAGGC--TAAATTACAGACCTTATATCACTGAAGTTGTAGTAG
* * *
27379293 AGTAGATCATA-TCA-AA-CATT-ATCTCCCTGAAGTTACAGTGGAGCAGGTTGAAGTTACAAGT
1 AGCAGATCAAAGTCACAATC-TTAATC-CCCTGAAGTTACAGTGG-GCAGATTGAAGTTACAAGT
*
27379354 CTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATA-CAAATCTTAT
63 CTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAAGCTTAT
27379403 CCCCCTAAAT
Statistics
Matches: 257, Mismatches: 27, Indels: 21
0.84 0.09 0.07
Matches are distributed among these distances:
180 15 0.06
181 94 0.37
182 102 0.40
183 10 0.04
184 36 0.14
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.29
Consensus pattern (180 bp):
AGCAGATCAAAGTCACAATCTTAATCCCCTGAAGTTACAGTGGGCAGATTGAAGTTACAAGTCTT
ATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAAGCTTATGTCCCTGAAGTTGCAGTG
GAACAGATTAAGGCTAAATTACAGACCTTATATCACTGAAGTTGTAGTAG
Found at i:27381517 original size:26 final size:26
Alignment explanation
Indices: 27381488--27381566 Score: 97
Period size: 26 Copynumber: 3.1 Consensus size: 26
27381478 GTCATGGAGG
*
27381488 TTATTTATTTTAAATTGTTGTGTATA
1 TTATTTATTTTAAATTGTTGTGCATA
* * *
27381514 TTATTCATTTTAATTTGTTTTGCATA
1 TTATTTATTTTAAATTGTTGTGCATA
**
27381540 TTATTTACCTTAAATTGTTGTGC-TA
1 TTATTTATTTTAAATTGTTGTGCATA
27381565 TT
1 TT
27381567 TACTTTAAAA
Statistics
Matches: 44, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
25 4 0.09
26 40 0.91
ACGTcount: A:0.24, C:0.06, G:0.10, T:0.59
Consensus pattern (26 bp):
TTATTTATTTTAAATTGTTGTGCATA
Found at i:27392015 original size:17 final size:17
Alignment explanation
Indices: 27391988--27392032 Score: 56
Period size: 16 Copynumber: 2.6 Consensus size: 17
27391978 TATAAGTTTA
27391988 AAAAAATTAAAAAAATTT
1 AAAAAA-TAAAAAAATTT
**
27392006 AAAAAATAAAACTATTT
1 AAAAAATAAAAAAATTT
27392023 -AAAAATAAAA
1 AAAAAATAAAA
27392033 GATTAAAAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 10 0.40
17 9 0.36
18 6 0.24
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.24
Consensus pattern (17 bp):
AAAAAATAAAAAAATTT
Found at i:27392041 original size:15 final size:16
Alignment explanation
Indices: 27392004--27392041 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
27391994 TTAAAAAAAT
*
27392004 TTAAAAAATAAAACTA
1 TTAAAAAATAAAACGA
*
27392020 TTTAAAAATAAAA-GA
1 TTAAAAAATAAAACGA
27392035 TTAAAAA
1 TTAAAAA
27392042 GATGTTTTCA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.26
Consensus pattern (16 bp):
TTAAAAAATAAAACGA
Found at i:27402824 original size:171 final size:171
Alignment explanation
Indices: 27402527--27403145 Score: 1033
Period size: 171 Copynumber: 3.6 Consensus size: 171
27402517 CGGTATGGAG
* * * * * *
27402527 TACAATTTATTTTTAATTTGAAGTTTGGATTTCGGACGTTCGTTTAGGGAAATAAATGAATTACT
1 TACAATTTATTTTTAGTTTGAAGTTTGGATTTCAGACCTTTGTTTAGGGAAATGAATGAATCACT
* * *
27402592 GGAACATTTTTCAAATATTTATAGTGTTTCAATAACTATAAGTGTTCCAATACTTATTGTAACCT
66 AGAAC-GTTTTCAAATATTTATAGTGTTCCAATAACTATAAGTGTTCCAATACTTATTGTAACCT
**
27402657 CTCGTAATATTATTTTTGTCATACGATATGGAGTCTTGCAAT
130 CTCGTAATATTATTTTCATCATACGATATGGAGTCTTGCAAT
* * *
27402699 TATAATTTATTTTTAGTTTGAAGTTTGGATTTCGGACCTTTGTTTTGGGAAATGAATGAATCACT
1 TACAATTTATTTTTAGTTTGAAGTTTGGATTTCAGACCTTTGTTTAGGGAAATGAATGAATCACT
*
27402764 AGAACGTTTTCAAATATTTAAAGTGTTCCAATAACTATAAGTGTTCCAATACTTATTGTAACCTC
66 AGAACGTTTTCAAATATTTATAGTGTTCCAATAACTATAAGTGTTCCAATACTTATTGTAACCTC
*
27402829 TCGTAATATTATTTTCATCATACGATATGAAGTCTTGCAAT
131 TCGTAATATTATTTTCATCATACGATATGGAGTCTTGCAAT
*
27402870 TACAATTTATTTTTAGTTTGAAGTTTGGATTTCAGACCTTTGTTTTGGGAAATGAATGAATCACT
1 TACAATTTATTTTTAGTTTGAAGTTTGGATTTCAGACCTTTGTTTAGGGAAATGAATGAATCACT
27402935 AGAACGTTTTCAAATATTTATAGTGTTCCAATAACTATAAGTGTTCCAATACTTATTGTAACCTC
66 AGAACGTTTTCAAATATTTATAGTGTTCCAATAACTATAAGTGTTCCAATACTTATTGTAACCTC
27403000 TCGTAATATTATTTTCATCATACGATATGGAGTCTTGCAAT
131 TCGTAATATTATTTTCATCATACGATATGGAGTCTTGCAAT
*
27403041 TACAATTTATTTTTAGTTCT-AAGTTTAGATTTCAGACCTTTGTTTAGGGAAATGAATGAATCAC
1 TACAATTTATTTTTAGTT-TGAAGTTTGGATTTCAGACCTTTGTTTAGGGAAATGAATGAATCAC
* *
27403105 TACAACTTTTTCAAATATTTATAGTGTTCCAATAACTATAA
65 TAGAACGTTTTCAAATATTTATAGTGTTCCAATAACTATAA
27403146 ATGAATGGGT
Statistics
Matches: 424, Mismatches: 22, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
171 361 0.85
172 63 0.15
ACGTcount: A:0.31, C:0.13, G:0.14, T:0.42
Consensus pattern (171 bp):
TACAATTTATTTTTAGTTTGAAGTTTGGATTTCAGACCTTTGTTTAGGGAAATGAATGAATCACT
AGAACGTTTTCAAATATTTATAGTGTTCCAATAACTATAAGTGTTCCAATACTTATTGTAACCTC
TCGTAATATTATTTTCATCATACGATATGGAGTCTTGCAAT
Found at i:27405273 original size:14 final size:13
Alignment explanation
Indices: 27405237--27405276 Score: 57
Period size: 11 Copynumber: 3.2 Consensus size: 13
27405227 ATGAATATTG
27405237 ATATGATAGGAAA
1 ATATGATAGGAAA
27405250 AT-TG-TAGGAAA
1 ATATGATAGGAAA
27405261 ATATCGATAGGAAA
1 ATAT-GATAGGAAA
27405275 AT
1 AT
27405277 TTTACCGATT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
11 9 0.38
12 3 0.12
13 3 0.12
14 9 0.38
ACGTcount: A:0.50, C:0.03, G:0.23, T:0.25
Consensus pattern (13 bp):
ATATGATAGGAAA
Found at i:27413376 original size:45 final size:45
Alignment explanation
Indices: 27413311--27414001 Score: 382
Period size: 44 Copynumber: 15.3 Consensus size: 45
27413301 TACAACTTTG
* * *
27413311 ATCTCCCTAAAGATGCAGTGGAGCAGATTGAAGATAGCAAGTCTC
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAGTCTT
* * * * * ** *
27413356 ATTTCCCTAAAGTTGTAGTGGAACAGATT-AAGGCTAAATTATAGACCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAA-G--ATAGCA-AG-TCTT
* * * *
27413405 ATCTCCCTGAAGTTGTAGTGGAGCAGGTTAAAG-TCAACAA-TCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAT-AGCAAGTCTT
* * *
27413449 AT-TCCCCTGAAGTTTCAGT-AAGGCAGATTGAAGTTA-CAAGTCTT
1 ATCT-CCCTGAAGTTGCAGTGGA-GCAGATTGAAGATAGCAAGTCTT
* * *
27413493 ATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAATCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAGTCTT
** * **
27413538 AGGTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAATTACAGATCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG--AT--AGCA-AG-TCTT
* ** ** * * * *
27413589 ATATCTTTGAAGTTTTAGTAGAGCAGA-T---CATATCAA-ACATT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAGTC-TT
* *
27413630 ATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTA-CAAGTCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAGTCTT
* * *
27413674 ATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATA-CAAATCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAGTCTT
* * * * * *
27413718 ATCCCCCTAAATTTGCAATGGGGCAGATTGAAGCTA-CAAGTCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAGTCTT
* * *
27413762 ATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGATATCCAA-CCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-GCAAGTCTT
* * * * * *
27413807 ATCTCCCTAAAGTTACAGTGGAGCAGGTTAAAGCTA-CTAA-TCCT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGC-AAGTCTT
* * *
27413851 ATCTCCCTGAAGTTGCATTGGAGCGGATT-AAAATGATG-AA-TCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAT-A-GCAAGTCTT
* ** * * *
27413895 ATAC-CTCTGAAGTTATAGTAGG-TCAGATTAAATCTACCATAGCAAGTCTT
1 AT-CTCCCTGAAGTTGCAGT-GGAGCAGATT-GA---A-GATAGCAAGTCTT
* * *
27413945 ATCTCCCTGAAGTTGCAGTGGAGCAGACTGAATATAGCAAATCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAGTCTT
*
27413990 GTCTCCCTGAAG
1 ATCTCCCTGAAG
27414002 ATTACATTGA
Statistics
Matches: 493, Mismatches: 109, Indels: 88
0.71 0.16 0.13
Matches are distributed among these distances:
40 1 0.00
41 22 0.04
42 2 0.00
43 12 0.02
44 221 0.45
45 129 0.26
46 6 0.01
47 7 0.01
48 3 0.01
49 38 0.08
50 29 0.06
51 23 0.05
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (45 bp):
ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAGTCTT
Found at i:27413525 original size:44 final size:43
Alignment explanation
Indices: 27413218--27413879 Score: 397
Period size: 44 Copynumber: 14.8 Consensus size: 43
27413208 CATTATGGCA
* * * * *
27413218 AATCTTATCTCCCTAAAGTTGCAGCGAAGCAGATTAAAGTCAC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAC
** * * *
27413261 TAATCTTA-C-CCCTTGAAGTTATAGTGGGGTAGATTGCAGTTAC
1 -AATCTTATCTCCC-TGAAGTTGCAGTGGAGCAGATTGAAGTTAC
* * *
27413304 AA-CTTTGATCTCCCTAAAGATGCAGTGGAGCAGATTGAAGATAGC
1 AATC-TT-ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-C
* * * * * * *
27413349 AAGTCTCATTTCCCTAAAGTTGTAGTGGAACAGATTAAGGCTAAATTAT
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT---G--AAGTTAC
* * * * *
27413398 AGACCTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTAAAGTCAAC
1 A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGT-TAC
* *
27413443 AATCTTAT-TCCCCTGAAGTTTCAGT-AAGGCAGATTGAAGTTAC
1 AATCTTATCT-CCCTGAAGTTGCAGTGGA-GCAGATTGAAGTTAC
* * *
27413486 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGC
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-C
** *
27413531 AAATCTTAGGTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAATTAC
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-------TTAC
* ** ** * *
27413582 AGATCTTATATCTTTGAAGTTTTAGTAGAGCAGA-T-CA--TATC
1 A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-C
* *
27413623 AAACATTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTAC
1 AATC-TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAC
* * *
27413667 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAC
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAC
* * * * * *
27413711 AAATCTTATCCCCCTAAATTTGCAATGGGGCAGATTGAAGCTAC
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAC
* *
27413755 AAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGATATCC
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-T-TAC
* * * * * *
27413801 AACCTTATCTCCCTAAAGTTACAGTGGAGCAGGTTAAAGCTAC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAC
* * *
27413844 TAATCCTATCTCCCTGAAGTTGCATTGGAGCGGATT
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
27413880 AAAATGATGA
Statistics
Matches: 470, Mismatches: 106, Indels: 84
0.71 0.16 0.13
Matches are distributed among these distances:
40 4 0.01
41 25 0.05
42 8 0.02
43 33 0.07
44 222 0.47
45 106 0.23
46 7 0.01
47 1 0.00
48 1 0.00
49 29 0.06
50 7 0.01
51 25 0.05
52 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (43 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAC
Found at i:27413527 original size:182 final size:180
Alignment explanation
Indices: 27413221--27413873 Score: 557
Period size: 181 Copynumber: 3.6 Consensus size: 180
27413211 TATGGCAAAT
* * * *
27413221 CTTATCTCCCTAAAGTTGCAGCGAAGCAGATTAAAGTCACTAATCTTA-CCCCTTGAAGTTAT-A
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGTCAC-AATCTTATCCCC-TGAAGTT-TCA
* * * * * * *
27413284 GTGGGGTAGATTGCAGTTACAACT-TTGATCTCCCTAAAGATGCAGTGGAGCAGATTGAAGATAG
63 GT-GGGCAGATTGAAGTTACAAGTCTT-ATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAG
* ** * *
27413348 CAAGTCTCATTTCCCTAAAGTTGTAGTGGAACAGATT-AAGGC-TAAATTATAGAC
126 CAAATCTCAGGTCCCTAAAGTTGCAGTGGAACAGATTGAA-GCATAAATTACAGAC
*
27413402 CTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTAAAGTCAACAATCTTATTCCCCTGAAGTTTCAG
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGTC-ACAATCTTA-TCCCCTGAAGTTTCAG
*
27413467 TAAGGCAGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCA
64 T-GGGCAGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCA
* * *
27413532 AATCTTAGGTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAATTACAGAT
128 AATCTCAGGTCCCTAAAGTTGCAGTGGAACAGATTGAAGC-ATAAATTACAGAC
* ** * * * * *
27413586 CTTATATCTTTGAAGTTTTAGTAGAGCAGATCATA-TCA-AA-CATTATCTCCCTGAAGTTGCAG
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGTCACAATC-TTATC-CCCTGAAGTTTCAG
*
27413648 TGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATA-CA
64 TGG-GCAGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCA
* *** * * ** * *
27413712 AATCTTATCCCCCTAAATTTGCAATGGGGCAGATTGAAGC-T--A-CA-AG-T
128 AATCTCAGGTCCCTAAAGTTGCAGTGGAACAGATTGAAGCATAAATTACAGAC
** * * * *
27413759 CTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGAT-ATCCAACCTTATCTCCCTAAAGTTAC
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAG-TCA--CAATCTTATC-CCCTGAAGTTTC
* * * * *
27413823 AGTGGAGCAGGTTAAAGCTACTAA-TCCTATCTCCCTGAAGTTGCATTGGAG
62 AGTGG-GCAGATTGAAGTTAC-AAGTCTTATCTCCCTGAAGTTGCAGTGGAG
27413874 CGGATTAAAA
Statistics
Matches: 397, Mismatches: 57, Indels: 40
0.80 0.12 0.08
Matches are distributed among these distances:
173 27 0.07
174 3 0.01
175 2 0.01
176 1 0.00
177 62 0.16
178 4 0.01
180 38 0.10
181 117 0.29
182 96 0.24
183 10 0.03
184 37 0.09
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (180 bp):
CTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGTCACAATCTTATCCCCTGAAGTTTCAGTG
GGCAGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAAT
CTCAGGTCCCTAAAGTTGCAGTGGAACAGATTGAAGCATAAATTACAGAC
Found at i:27413682 original size:181 final size:181
Alignment explanation
Indices: 27413291--27413718 Score: 503
Period size: 182 Copynumber: 2.4 Consensus size: 181
27413281 ATAGTGGGGT
* * * * * * *
27413291 AGATTGCAGTTACAACT-TTGATCTCCCTAAAGATGCAGTGGAGCAGATTGAAGATAGCAAGTCT
1 AGATTGAAGTTACAAGTCTT-ATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAATCT
* ** * * *
27413355 CATTTCCCTAAAGTTGTAGTGGAACAGATTAAGGCTAAATTATAGACCTTATCTCCCTGAAGTTG
65 TAGGTCCCTAAAGTTGCAGTGGAACAGATTAAGGCTAAATTACAGACCTTATATCCCTGAAGTTG
* * * *
27413420 TAGTGGAGCAGGTTAAAGTCAACAATCTTATTCCCCTGAAGTTTCAGTAAGGC
130 TAGTAGAGCAGATCAAAGTCAACAA-CTTATTCCCCTGAAGTTGCAGTAAGGC
27413473 AGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAATCTT
1 AGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAATCTT
* * **
27413538 AGGTCCCTGAAGTTGCAGTGGAACAGATTGAA-GCTATAAATTACAGATCTTATATCTTTGAAGT
66 AGGTCCCTAAAGTTGCAGTGGAACAGATT-AAGGC--TAAATTACAGACCTTATATCCCTGAAGT
* * *
27413602 TTTAGTAGAGCAGATCATA-TC-A-AACATTA-TCTCCCTGAAGTTGCAGT-GGAGC
128 TGTAGTAGAGCAGATCAAAGTCAACAAC-TTATTC-CCCTGAAGTTGCAGTAAG-GC
*
27413654 AGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATA-CAAATCTT
1 AGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAATCTT
27413718 A
66 A
27413719 TCCCCCTAAA
Statistics
Matches: 214, Mismatches: 25, Indels: 16
0.84 0.10 0.06
Matches are distributed among these distances:
180 13 0.06
181 76 0.36
182 82 0.38
183 6 0.03
184 37 0.17
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (181 bp):
AGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAATCTT
AGGTCCCTAAAGTTGCAGTGGAACAGATTAAGGCTAAATTACAGACCTTATATCCCTGAAGTTGT
AGTAGAGCAGATCAAAGTCAACAACTTATTCCCCTGAAGTTGCAGTAAGGC
Found at i:27414338 original size:15 final size:15
Alignment explanation
Indices: 27414320--27414349 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
27414310 ATAAAACCCC
27414320 CCAAAAATTAAAAGT
1 CCAAAAATTAAAAGT
*
27414335 CCAATAATTAAAAGT
1 CCAAAAATTAAAAGT
27414350 TCATTTACAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.13, G:0.07, T:0.23
Consensus pattern (15 bp):
CCAAAAATTAAAAGT
Found at i:27415306 original size:10 final size:11
Alignment explanation
Indices: 27415288--27415316 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
27415278 ACTTTGGCCC
27415288 TTCATTTTATT
1 TTCATTTTATT
27415299 TT-ATTTTATT
1 TTCATTTTATT
27415309 TTCATTTT
1 TTCATTTT
27415317 TTCTTGTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.76
Consensus pattern (11 bp):
TTCATTTTATT
Found at i:27415396 original size:8 final size:8
Alignment explanation
Indices: 27415383--27415411 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
27415373 CATGCTCAAT
27415383 TTATTAAA
1 TTATTAAA
27415391 TTATTAAA
1 TTATTAAA
27415399 TTATTAAA
1 TTATTAAA
27415407 TTATT
1 TTATT
27415412 TATTATTCTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (8 bp):
TTATTAAA
Found at i:27415844 original size:26 final size:26
Alignment explanation
Indices: 27415815--27415893 Score: 88
Period size: 26 Copynumber: 3.1 Consensus size: 26
27415805 GTCATGGAGG
* *
27415815 TTATTTATTTTAAATTGCTGTGTATA
1 TTATTTATTTTAAATTGTTGTGCATA
* * *
27415841 TTATTCATTTTAATTTGTTTTGCATA
1 TTATTTATTTTAAATTGTTGTGCATA
**
27415867 TTATTTACCTTAAATTGTTGTGC-TA
1 TTATTTATTTTAAATTGTTGTGCATA
27415892 TT
1 TT
27415894 TACTTTAAAA
Statistics
Matches: 43, Mismatches: 10, Indels: 1
0.80 0.19 0.02
Matches are distributed among these distances:
25 4 0.09
26 39 0.91
ACGTcount: A:0.24, C:0.08, G:0.10, T:0.58
Consensus pattern (26 bp):
TTATTTATTTTAAATTGTTGTGCATA
Found at i:27426310 original size:17 final size:17
Alignment explanation
Indices: 27426283--27426327 Score: 56
Period size: 16 Copynumber: 2.6 Consensus size: 17
27426273 TATAAGTTTA
27426283 AAAAAATTAAAAAAATTT
1 AAAAAA-TAAAAAAATTT
**
27426301 AAAAAATAAAACTATTT
1 AAAAAATAAAAAAATTT
27426318 -AAAAATAAAA
1 AAAAAATAAAA
27426328 GATTAAAAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 10 0.40
17 9 0.36
18 6 0.24
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.24
Consensus pattern (17 bp):
AAAAAATAAAAAAATTT
Found at i:27426336 original size:15 final size:16
Alignment explanation
Indices: 27426299--27426336 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
27426289 TTAAAAAAAT
*
27426299 TTAAAAAATAAAACTA
1 TTAAAAAATAAAACGA
*
27426315 TTTAAAAATAAAA-GA
1 TTAAAAAATAAAACGA
27426330 TTAAAAA
1 TTAAAAA
27426337 GATGTTTTCA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.26
Consensus pattern (16 bp):
TTAAAAAATAAAACGA
Found at i:27429901 original size:16 final size:17
Alignment explanation
Indices: 27429834--27429917 Score: 75
Period size: 17 Copynumber: 4.8 Consensus size: 17
27429824 TGGAAACTAT
*
27429834 TTTAAAACATAAAAA-A
1 TTTAAAAAATAAAAATA
* *
27429850 -ATAAAAAATAAATATAA
1 TTTAAAAAATAAAAAT-A
27429867 GTTTAAAAAAAATTAAAAATA
1 -TTT--AAAAAA-TAAAAATA
27429888 TTTAAAAAATAAAAATA
1 TTTAAAAAATAAAAATA
27429905 TTT-AAAAATAAAA
1 TTTAAAAAATAAAA
27429918 GATTAAAAAG
Statistics
Matches: 56, Mismatches: 5, Indels: 14
0.75 0.07 0.19
Matches are distributed among these distances:
15 11 0.20
16 10 0.18
17 12 0.21
18 6 0.11
19 1 0.02
20 3 0.05
21 7 0.12
22 6 0.11
ACGTcount: A:0.70, C:0.01, G:0.01, T:0.27
Consensus pattern (17 bp):
TTTAAAAAATAAAAATA
Found at i:27429910 original size:10 final size:10
Alignment explanation
Indices: 27429868--27429914 Score: 55
Period size: 10 Copynumber: 5.0 Consensus size: 10
27429858 TAAATATAAG
*
27429868 TTTAAAAAAA
1 TTTAAAAATA
*
27429878 ATTAAAAATA
1 TTTAAAAATA
27429888 TTTAAAAA-A
1 TTTAAAAATA
27429897 --TAAAAATA
1 TTTAAAAATA
27429905 TTTAAAAATA
1 TTTAAAAATA
27429915 AAAGATTAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
7 6 0.19
8 1 0.03
9 1 0.03
10 23 0.74
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (10 bp):
TTTAAAAATA
Found at i:27433885 original size:169 final size:170
Alignment explanation
Indices: 27433504--27433948 Score: 664
Period size: 169 Copynumber: 2.6 Consensus size: 170
27433494 CGGTATGGAG
* * * * * *
27433504 TACAATTTATTTTTAATTTGAAGTTTGGATTTCAGACCTTCGTTTAGGAAAATAAATGAATTACT
1 TACAATTTATTTTTAGTTTGAAGTTTAGATTTCAGACCTTTGTTTAGGGAAATGAATGAATCACT
* * *
27433569 GGAATATTTTTAAATATTTATAGTGTTCCAATAACTACAAGTGTTCTAATACTTATTGTAACCTC
66 -GAACATTTTCAAATATTTATAGTGTTCCAATAACTATAAGTGTTCTAATACTTATTGTAACCTC
* *
27433634 TCGTAATATTAGTTTCGTCATACGATATGAATTCTTGCAAT
130 TCGTAATATTAGTTTCATCATACGATATGAAGTCTTGCAAT
*
27433675 TACAATTTATTTTTAGTTTGAAG-TTAGGATTTCAGACCTTTGTTTTGGGAAATGAATGAATCAC
1 TACAATTTATTTTTAGTTTGAAGTTTA-GATTTCAGACCTTTGTTTAGGGAAATGAATGAATCAC
* *
27433739 TAGAACGTTTTCAAATATTTATACTGTTCCAATAACTATAAGTGTTC-AATACTTATTGTAACCT
65 T-GAACATTTTCAAATATTTATAGTGTTCCAATAACTATAAGTGTTCTAATACTTATTGTAACCT
* * *
27433803 CTCTTAATATTATTTTCATCATACGAT-TGGAGTCTTGCAAT
129 CTCGTAATATTAGTTTCATCATACGATATGAAGTCTTGCAAT
27433844 TACAATTTATTTTTAGTTCT-AAGTTTAGATTTCAGACCTTTGTTTAGGGAAATGAATGAATCAC
1 TACAATTTATTTTTAGTT-TGAAGTTTAGATTTCAGACCTTTGTTTAGGGAAATGAATGAATCAC
27433908 TGCAACATTTTCAAATATTTATAGTGTTCCAATAACTATAA
65 TG-AACATTTTCAAATATTTATAGTGTTCCAATAACTATAA
27433949 ATGAATGGGT
Statistics
Matches: 249, Mismatches: 21, Indels: 10
0.89 0.08 0.04
Matches are distributed among these distances:
168 1 0.00
169 106 0.43
170 47 0.19
171 95 0.38
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.42
Consensus pattern (170 bp):
TACAATTTATTTTTAGTTTGAAGTTTAGATTTCAGACCTTTGTTTAGGGAAATGAATGAATCACT
GAACATTTTCAAATATTTATAGTGTTCCAATAACTATAAGTGTTCTAATACTTATTGTAACCTCT
CGTAATATTAGTTTCATCATACGATATGAAGTCTTGCAAT
Found at i:27442823 original size:13 final size:13
Alignment explanation
Indices: 27442807--27442831 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27442797 TTTACAAAAG
27442807 CAAATGGTTTTTA
1 CAAATGGTTTTTA
27442820 CAAATGGTTTTT
1 CAAATGGTTTTT
27442832 GGAAACACGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.08, G:0.16, T:0.48
Consensus pattern (13 bp):
CAAATGGTTTTTA
Found at i:27454146 original size:30 final size:31
Alignment explanation
Indices: 27454112--27454173 Score: 74
Period size: 30 Copynumber: 2.0 Consensus size: 31
27454102 AAACATTTCT
* *
27454112 ACTTT-CCCCCTAAAATTTTTAC-TCCTTCCC
1 ACTTTACCCCC-AAAACTTTTACTTCCCTCCC
*
27454142 ACTTTACTCCCAAAACTTTTACTTCCCTCCC
1 ACTTTACCCCCAAAACTTTTACTTCCCTCCC
27454173 A
1 A
27454174 TCCCAACCCC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
30 15 0.56
31 12 0.44
ACGTcount: A:0.23, C:0.40, G:0.00, T:0.37
Consensus pattern (31 bp):
ACTTTACCCCCAAAACTTTTACTTCCCTCCC
Found at i:27454479 original size:18 final size:18
Alignment explanation
Indices: 27454451--27454489 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
27454441 TCCCGCAAAA
27454451 TTTTACTCCCCC-AAACT
1 TTTTACTCCCCCTAAACT
27454468 TTTTATCTCCCCCTAAACT
1 TTTTA-CTCCCCCTAAACT
27454487 TTT
1 TTT
27454490 ACTTCTCACC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 5 0.25
18 7 0.35
19 8 0.40
ACGTcount: A:0.21, C:0.36, G:0.00, T:0.44
Consensus pattern (18 bp):
TTTTACTCCCCCTAAACT
Found at i:27460753 original size:42 final size:41
Alignment explanation
Indices: 27460694--27460903 Score: 175
Period size: 42 Copynumber: 5.4 Consensus size: 41
27460684 ATTCATTGGT
* *
27460694 GGTTGCAAAGTGCTGATTCCACAGTATCTTAAATGTGAAAGG
1 GGTTGCTAAGTGCTGATTCCACCGTATCTTAAATGTG-AAGG
*
27460736 GGTTGCTAAGTGCTGATTCC-CCG-AGTC----AT-TG--GT
1 GGTTGCTAAGTGCTGATTCCACCGTA-TCTTAAATGTGAAGG
27460769 GGTTGCTAAGTGCTGATTCCACCGTATCTTAAATGTGAAGG
1 GGTTGCTAAGTGCTGATTCCACCGTATCTTAAATGTGAAGG
* * * *
27460810 GGCTTGCTAAGTGTTGATTTC-CCGAATC----AT-TG--GT
1 GG-TTGCTAAGTGCTGATTCCACCGTATCTTAAATGTGAAGG
* *
27460844 GGTTGCTAAGTGTTGATCCCACCGTATCTTAAATGTGAAGG
1 GGTTGCTAAGTGCTGATTCCACCGTATCTTAAATGTGAAGG
*
27460885 GGCTTGCTAAGTGTTGATT
1 GG-TTGCTAAGTGCTGATT
27460904 TCCCGAATCA
Statistics
Matches: 135, Mismatches: 13, Indels: 40
0.72 0.07 0.21
Matches are distributed among these distances:
33 37 0.27
34 14 0.10
35 1 0.01
36 4 0.03
37 4 0.03
38 4 0.03
39 4 0.03
40 1 0.01
41 16 0.12
42 50 0.37
ACGTcount: A:0.22, C:0.17, G:0.28, T:0.33
Consensus pattern (41 bp):
GGTTGCTAAGTGCTGATTCCACCGTATCTTAAATGTGAAGG
Done.