Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 89 of 284
Found at i:29516828 original size:209 final size:207
Alignment explanation
Indices: 29516468--29516885 Score: 617
Period size: 209 Copynumber: 2.0 Consensus size: 207
29516458 GCTGATCGAA
* * * * *
29516468 GATAGCAGATTTGGCATCTCTGTATTGACAGAGAGTAGATCGAAGATAGTAGATTTGGCGTCTCT
1 GATAGCAGATTTGACATCTCTGTATTAACAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCT
* * * *
29516533 ATATTGACAGAGGGCAGGTCGAAGATAGCTGATTTGGCTTCTCTGTATTGACAGAGGGCAGATCG
66 ATATTGACAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGACAGAGGGCAGATCG
*
29516598 AAGATAGCAGATTTGGCGTCTCTGTATCGACGGGGAGCAGATCAAAGAT-AGCAGATTTGGCGTC
131 AAGATAGCAGATTTGGCGTCTCTGTATCGAC--AGAGCAGATCAAAGATGA-CAGATTTGGCGTC
*
29516662 TCTGTATTGACAGAG
193 TCTATATTGACAGAG
29516677 GATAGCAGATTTGACGAT-TCTGTATTAACAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTC
1 GATAGCAGATTTGAC-ATCTCTGTATTAACAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTC
* *
29516741 TATATTGATAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTTTGTATTGACAGAGGGCAGATC
65 TATATTGACAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGACAGAGGGCAGATC
* * * *
29516806 GAAGAT-GACAGATTTGGCGTCTCTGTATTGACAGAGTAGATCGAATATGACAGATTTGGCGTCT
130 GAAGATAG-CAGATTTGGCGTCTCTGTATCGACAGAGCAGATCAAAGATGACAGATTTGGCGTCT
29516870 CTATATTGACAGAG
194 CTATATTGACAGAG
29516884 GA
1 GA
29516886 CAGATCAAAG
Statistics
Matches: 189, Mismatches: 17, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
207 41 0.22
208 2 0.01
209 144 0.76
210 2 0.01
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.28
Consensus pattern (207 bp):
GATAGCAGATTTGACATCTCTGTATTAACAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCT
ATATTGACAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGACAGAGGGCAGATCG
AAGATAGCAGATTTGGCGTCTCTGTATCGACAGAGCAGATCAAAGATGACAGATTTGGCGTCTCT
ATATTGACAGAG
Found at i:29516879 original size:23 final size:23
Alignment explanation
Indices: 29516811--29516882 Score: 62
Period size: 23 Copynumber: 3.3 Consensus size: 23
29516801 AGATCGAAGA
*
29516811 TGACAGATTTGGCGTCTCTGTAT
1 TGACAGATTTGGCGTCTCTATAT
* * * **
29516834 TGACAGA-GTAG-ATC-GAATA-
1 TGACAGATTTGGCGTCTCTATAT
29516853 TGACAGATTTGGCGTCTCTATAT
1 TGACAGATTTGGCGTCTCTATAT
29516876 TGACAGA
1 TGACAGA
29516883 GGACAGATCA
Statistics
Matches: 34, Mismatches: 11, Indels: 8
0.64 0.21 0.15
Matches are distributed among these distances:
19 7 0.21
20 4 0.12
21 4 0.12
22 5 0.15
23 14 0.41
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (23 bp):
TGACAGATTTGGCGTCTCTATAT
Found at i:29516890 original size:86 final size:87
Alignment explanation
Indices: 29516677--29516918 Score: 296
Period size: 86 Copynumber: 2.8 Consensus size: 87
29516667 ATTGACAGAG
* * *
29516677 GATAGCAGATTTGACGAT-TCTGTATTAACAGA-GAGCAGATCGAAGAT-AGCAGATTTGGCATC
1 GATAGCAGATTTGGCG-TCTCTGTATTGACAGAGGA-CAGATCGAAGATGA-CAGATTTGGCGTC
* *
29516739 TCTATATTGATAGAGAGCAGATCGAA
63 TCTGTATTGA-ACAGAGCAGATCGAA
* *
29516765 GATAGCAGATTTGGCGTCTTTGTATTGACAGAGGGCAGATCGAAGATGACAGATTTGGCGTCTCT
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGGACAGATCGAAGATGACAGATTTGGCGTCTCT
*
29516830 GTATTG-ACAGAGTAGATCGAA
66 GTATTGAACAGAGCAGATCGAA
* * * *
29516851 TAT-GACAGATTTGGCGTCTCTATATTGACAGAGGACAGATCAAAGATGACAGATTTGGTGTCTC
1 GATAG-CAGATTTGGCGTCTCTGTATTGACAGAGGACAGATCGAAGATGACAGATTTGGCGTCTC
29516915 TGTA
65 TGTA
29516919 CTTGCCGGGA
Statistics
Matches: 136, Mismatches: 14, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
85 1 0.01
86 73 0.54
87 1 0.01
88 59 0.43
89 2 0.01
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.28
Consensus pattern (87 bp):
GATAGCAGATTTGGCGTCTCTGTATTGACAGAGGACAGATCGAAGATGACAGATTTGGCGTCTCT
GTATTGAACAGAGCAGATCGAA
Found at i:29516954 original size:130 final size:130
Alignment explanation
Indices: 29516708--29516960 Score: 286
Period size: 130 Copynumber: 1.9 Consensus size: 130
29516698 GTATTAACAG
* *
29516708 AGAGCAGATCGAAGATAGCAGATTTGGCATCTCTATATTGATAGAGAGCAGATCGAAGATAGCAG
1 AGAGCAGATCGAAGATAGCAGATTTGGCATCTCTATATTGACAGAGAGCAGATCAAAGATAGCAG
* * * **
29516773 ATTTGGCGTCTTTGTATTGACAGAGGGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTGAC
66 ATTTGGCGTCTCTGTATTGACAGAGGGCAAATCAAAGATGACAGACATGGCGTCTCTGTATTGAC
* * *
29516838 AGAGTAGATCGAATAT-GACAGATTTGGCGTCTCTATATTGACAGAG-GACAGATCAAAGAT-GA
1 AGAGCAGATCGAAGATAG-CAGATTTGGCATCTCTATATTGACAGAGAG-CAGATCAAAGATAG-
* *
29516900 CAGATTTGGTGTCTCTGTACTTG-CCG-GGATGCAAATCAAAGAT-ATCA-ACATGGCGTCTCTG
63 CAGATTTGGCGTCTCTGTA-TTGACAGAGG--GCAAATCAAAGATGA-CAGACATGGCGTCTCTG
29516961 AGTTTGCAAG
Statistics
Matches: 104, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
129 5 0.05
130 83 0.80
131 16 0.15
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (130 bp):
AGAGCAGATCGAAGATAGCAGATTTGGCATCTCTATATTGACAGAGAGCAGATCAAAGATAGCAG
ATTTGGCGTCTCTGTATTGACAGAGGGCAAATCAAAGATGACAGACATGGCGTCTCTGTATTGAC
Found at i:29517866 original size:34 final size:33
Alignment explanation
Indices: 29517806--29517871 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
29517796 CTCGACGGAG
29517806 CTCCGAGGGGCCTGCTCTCCGTCCCTTTCAGAGT
1 CTCCGAGGGGCCTGCTCTCCGTCCCTTT-AGAGT
* *
29517840 CTCCGA-GGGCTTGCTTTCCGTCCCCTTTAGAG
1 CTCCGAGGGGCCTGCTCTCCGT-CCCTTTAGAG
29517872 CTTTCTTCAG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 17 0.59
34 12 0.41
ACGTcount: A:0.09, C:0.36, G:0.26, T:0.29
Consensus pattern (33 bp):
CTCCGAGGGGCCTGCTCTCCGTCCCTTTAGAGT
Found at i:29518365 original size:29 final size:28
Alignment explanation
Indices: 29518333--29518391 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
29518323 AATCCTTTTT
*
29518333 TATATATA-TATTTAATTTATTTTAAATAC
1 TATATATATTATTT-ATTT-TTTTAAACAC
*
29518362 TATATGTATTATTTATTTTTTTAAACAC
1 TATATATATTATTTATTTTTTTAAACAC
29518390 TA
1 TA
29518392 GTTATATGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
28 11 0.41
29 11 0.41
30 5 0.19
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.56
Consensus pattern (28 bp):
TATATATATTATTTATTTTTTTAAACAC
Found at i:29518441 original size:25 final size:21
Alignment explanation
Indices: 29518409--29518465 Score: 55
Period size: 21 Copynumber: 2.6 Consensus size: 21
29518399 GTAAAAATAG
29518409 TATA-TATATTATTTATCATATTA
1 TATATTATATTATTT-T-AT-TTA
29518432 TATTATTATA-TATTTTATTTA
1 TA-TATTATATTATTTTATTTA
*
29518453 TATATTTTATTAT
1 TATATTATATTAT
29518466 ATGTTATATA
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
20 6 0.20
21 8 0.27
22 2 0.07
23 3 0.10
24 7 0.23
25 4 0.13
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (21 bp):
TATATTATATTATTTTATTTA
Found at i:29518441 original size:29 final size:28
Alignment explanation
Indices: 29518409--29518494 Score: 88
Period size: 28 Copynumber: 3.0 Consensus size: 28
29518399 GTAAAAATAG
29518409 TATATATATTATTTATCATATTATATTAT
1 TATATATATTATTTAT-ATATTATATTAT
* *
29518438 TATATATTTTATTTATATATTTTATTA-
1 TATATATATTATTTATATATTATATTAT
*
29518465 TATGT-TATATATTT-TACTATATATATTAT
1 TATATATAT-TATTTATA-TAT-TATATTAT
29518494 T
1 T
29518495 CCTTACATTA
Statistics
Matches: 48, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
26 4 0.08
27 12 0.25
28 16 0.33
29 16 0.33
ACGTcount: A:0.35, C:0.02, G:0.01, T:0.62
Consensus pattern (28 bp):
TATATATATTATTTATATATTATATTAT
Found at i:29518442 original size:13 final size:13
Alignment explanation
Indices: 29518413--29518467 Score: 62
Period size: 13 Copynumber: 4.4 Consensus size: 13
29518403 AAATAGTATA
29518413 TATATTA-TTTAT
1 TATATTATTTTAT
* *
29518425 CATATTATATTAT
1 TATATTATTTTAT
29518438 TATA-TATTTTAT
1 TATATTATTTTAT
29518450 T-TATATATTTTAT
1 TATAT-TATTTTAT
29518463 TATAT
1 TATAT
29518468 GTTATATATT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
11 2 0.06
12 14 0.40
13 16 0.46
14 3 0.09
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.64
Consensus pattern (13 bp):
TATATTATTTTAT
Found at i:29518467 original size:25 final size:29
Alignment explanation
Indices: 29518409--29518465 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
29518399 GTAAAAATAG
29518409 TATATATATTATTTATCATATTATATTAT
1 TATATATATTATTTATCATATTATATTAT
* *
29518438 TATATATTTTATTTAT-ATATTTTATTAT
1 TATATATATTATTTATCATATTATATTAT
29518466 ATGTTATATA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
28 11 0.42
29 15 0.58
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (29 bp):
TATATATATTATTTATCATATTATATTAT
Found at i:29518485 original size:12 final size:11
Alignment explanation
Indices: 29518409--29518491 Score: 53
Period size: 13 Copynumber: 6.9 Consensus size: 11
29518399 GTAAAAATAG
29518409 TATATATATTATT
1 TATATATA-T-TT
*
29518422 TATCATATTATAT
1 TAT-ATA-TATTT
29518435 TATTATATATTT
1 TA-TATATATTT
29518447 TATTTATATATTT
1 TA--TATATATTT
*
29518460 TAT-TATATGT
1 TATATATATTT
29518470 TATATAT-TTT
1 TATATATATTT
29518480 ACTATATATATT
1 --TATATATATT
29518492 ATTCCTTACA
Statistics
Matches: 58, Mismatches: 4, Indels: 16
0.74 0.05 0.21
Matches are distributed among these distances:
10 11 0.19
11 4 0.07
12 13 0.22
13 23 0.40
14 5 0.09
15 2 0.03
ACGTcount: A:0.35, C:0.02, G:0.01, T:0.61
Consensus pattern (11 bp):
TATATATATTT
Found at i:29518488 original size:33 final size:33
Alignment explanation
Indices: 29518427--29518541 Score: 101
Period size: 33 Copynumber: 3.4 Consensus size: 33
29518417 TTATTTATCA
*
29518427 TATTATATTATTATATATTTTATTTATATATTT
1 TATTATATTATTATATATTTTATATATATATTT
*
29518460 TATTATA-TGTTATATATTTTACTATATATATTAT
1 TATTATATTATTATATATTTTA-TATATATATT-T
* * * *
29518494 TCCTTACATTATT-TTTATTTTAT-TATAAATTAT
1 T-ATTATATTATTATATATTTTATATATATATT-T
*
29518527 ATATTATTTTATTAT
1 -TATTATATTATTAT
29518542 TCATTAATTG
Statistics
Matches: 66, Mismatches: 10, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
32 13 0.20
33 33 0.50
34 5 0.08
35 12 0.18
36 3 0.05
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (33 bp):
TATTATATTATTATATATTTTATATATATATTT
Found at i:29518547 original size:22 final size:21
Alignment explanation
Indices: 29518498--29518547 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
29518488 TATTATTCCT
*
29518498 TACATTATTTTTATTTTATTA
1 TACATTATTATTATTTTATTA
*
29518519 TAAATTATATATTATTTTATTA
1 TACATTAT-TATTATTTTATTA
*
29518541 TTCATTA
1 TACATTA
29518548 ATTGCGTAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 7 0.29
22 17 0.71
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (21 bp):
TACATTATTATTATTTTATTA
Found at i:29521212 original size:20 final size:21
Alignment explanation
Indices: 29521189--29521234 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
29521179 GAATTTTATT
29521189 GATACTTGA-TTGA-AGGTATC
1 GATACTT-ATTTGATAGGTATC
*
29521209 GATA-ATATTTGATAGGTATC
1 GATACTTATTTGATAGGTATC
29521229 GATACT
1 GATACT
29521235 AGGTTAAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 5
0.75 0.07 0.18
Matches are distributed among these distances:
18 1 0.05
19 5 0.24
20 15 0.71
ACGTcount: A:0.33, C:0.09, G:0.22, T:0.37
Consensus pattern (21 bp):
GATACTTATTTGATAGGTATC
Found at i:29521347 original size:20 final size:19
Alignment explanation
Indices: 29521319--29521358 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
29521309 ATTTTTAATA
*
29521319 AGTATCGATACATAATTACT
1 AGTAGCGATACATAA-TACT
*
29521339 AGTAGCGATACTTAATACT
1 AGTAGCGATACATAATACT
29521358 A
1 A
29521359 TTGCTCAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (19 bp):
AGTAGCGATACATAATACT
Found at i:29521995 original size:18 final size:18
Alignment explanation
Indices: 29521938--29521997 Score: 57
Period size: 18 Copynumber: 3.2 Consensus size: 18
29521928 AGAACATATT
* *
29521938 TTTTTATAATTTTCAAAAA
1 TTTTTATAATTTTC-TAAG
* * *
29521957 TATATTATAATTTTTTTAG
1 T-TTTTATAATTTTCTAAG
29521976 TTTTTATAATTTTCTAAG
1 TTTTTATAATTTTCTAAG
29521994 TTTT
1 TTTT
29521998 CTTGTTTTTG
Statistics
Matches: 32, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
18 18 0.56
19 3 0.09
20 11 0.34
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (18 bp):
TTTTTATAATTTTCTAAG
Found at i:29524434 original size:15 final size:15
Alignment explanation
Indices: 29524414--29524443 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
29524404 GTGGATTAAA
*
29524414 ATGTGATATTGTGAT
1 ATGTGAAATTGTGAT
29524429 ATGTGAAATTGTGAT
1 ATGTGAAATTGTGAT
29524444 TAATAAGTAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.27, T:0.43
Consensus pattern (15 bp):
ATGTGAAATTGTGAT
Found at i:29525580 original size:105 final size:105
Alignment explanation
Indices: 29525316--29525558 Score: 486
Period size: 105 Copynumber: 2.3 Consensus size: 105
29525306 AAGGAGGTTT
29525316 GAAAGAGTTGTCCTCCACTTTATTAAGATATTCTATTTGGGTGACACTATTTTCTCTGACACTAT
1 GAAAGAGTTGTCCTCCACTTTATTAAGATATTCTATTTGGGTGACACTATTTTCTCTGACACTAT
29525381 TTCCTTTTTCTATTTGGGTTTTCTCTGACCAAGCACAAAC
66 TTCCTTTTTCTATTTGGGTTTTCTCTGACCAAGCACAAAC
29525421 GAAAGAGTTGTCCTCCACTTTATTAAGATATTCTATTTGGGTGACACTATTTTCTCTGACACTAT
1 GAAAGAGTTGTCCTCCACTTTATTAAGATATTCTATTTGGGTGACACTATTTTCTCTGACACTAT
29525486 TTCCTTTTTCTATTTGGGTTTTCTCTGACCAAGCACAAAC
66 TTCCTTTTTCTATTTGGGTTTTCTCTGACCAAGCACAAAC
29525526 GAAAGAGTTGTCCTCCACTTTATTAAGATATTC
1 GAAAGAGTTGTCCTCCACTTTATTAAGATATTC
29525559 ATTCCCCATT
Statistics
Matches: 138, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
105 138 1.00
ACGTcount: A:0.25, C:0.21, G:0.14, T:0.40
Consensus pattern (105 bp):
GAAAGAGTTGTCCTCCACTTTATTAAGATATTCTATTTGGGTGACACTATTTTCTCTGACACTAT
TTCCTTTTTCTATTTGGGTTTTCTCTGACCAAGCACAAAC
Found at i:29527712 original size:207 final size:207
Alignment explanation
Indices: 29527255--29528181 Score: 1394
Period size: 207 Copynumber: 4.5 Consensus size: 207
29527245 AAATCTGCTT
* * * *
29527255 CTTCAATTTGTTCCCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGT-AA-AC
1 CTTCGATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
* *
29527318 ATGCAAAAGCCAAATCAGCTATGTCTTTGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATC
66 ATG--AAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATC
* * * ** * ** *
29527383 TTGGATC-TGCTTCAGTCTAATCATCTGAAGGTTAGATCTACTATATGTCTATCCTCCGCCGAAT
129 TTGAATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTACTATGTGTCTGCCCTCCGTCGAAT
29527447 ATGGAGACGCCAAA
194 ATGGAGACGCCAAA
* * *
29527461 CTTCGATTTGTTCTGTGACAATACAGAA-ATGTCAAATAATCTTAGACTTGCTTCAACGTAAACA
1 CTTCGATTTGTTCTCTGACAATACA-AAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACA
*
29527525 CATGAAATCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCT
65 CATGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCT
29527590 TGAATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTACTATGTGTCTGCCCTCCGTCGAATA
130 TGAATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTACTATGTGTCTGCCCTCCGTCGAATA
29527655 TGGAGACGCCAAA
195 TGGAGACGCCAAA
*
29527668 CTTCGATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGACTTGCTTCAACATAAACAC
1 CTTCGATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
* * *
29527733 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTATAAGCACAAGGATGCCAAACCATCTT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * * ** *
29527798 GGATCTTACTTCAGTATAAACACCTGAAGGCCAGATCTGTTATGTGTCTGCCCTCCGTCAAATAT
131 GAATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTACTATGTGTCTGCCCTCCGTCGAATAT
*
29527863 GGAGACGTCAAA
196 GGAGACGCCAAA
29527875 CTTCGATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
* * * *
29527940 ATGAAAGCCAAATCAACTATGTCTTCGATTTGTTCCTTGCAAGCACAAGGATGCCAAACCATTTT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
29528005 GAATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCTGTCGAATAT
131 GAATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTACTATGTGTCTGCCCTCCGTCGAATAT
*
29528070 GGAGATGCCAAA
196 GGAGACGCCAAA
* * * ** *
29528082 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAAATTTGCTTCATTGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
* *
29528147 GTGAAAGCCAAATCAGCTATGTCTTTGATTTGCTC
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGCTC
29528182 TCCGTCGAAT
Statistics
Matches: 658, Mismatches: 58, Indels: 9
0.91 0.08 0.01
Matches are distributed among these distances:
206 115 0.17
207 538 0.82
208 5 0.01
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (207 bp):
CTTCGATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
ATGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GAATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTACTATGTGTCTGCCCTCCGTCGAATAT
GGAGACGCCAAA
Found at i:29528402 original size:43 final size:43
Alignment explanation
Indices: 29528355--29528497 Score: 129
Period size: 43 Copynumber: 3.3 Consensus size: 43
29528345 ATCTGCTCCA
29528355 CTACTGCTTAGGGAGATAAGATCCTCAATTTTGATCTGTTACC
1 CTACTGCTTAGGGAGATAAGATCCTCAATTTTGATCTGTTACC
* * *
29528398 CTACTGCTTAAGGGA-TTAAGGCAAGTCGTC---GTTGATCTGTT-CC
1 CTACTGCTT-AGGGAGATAA-G--A-TCCTCAATTTTGATCTGTTACC
*
29528441 GCTACTGCTTAGGGAGATAAGAT-CTATAATTTT-ATCCTGTTACC
1 -CTACTGCTTAGGGAGATAAGATCCT-CAATTTTGAT-CTGTTACC
29528485 CTACTGCTTAGGG
1 CTACTGCTTAGGG
29528498 GGTTAAGGCG
Statistics
Matches: 80, Mismatches: 7, Indels: 26
0.71 0.06 0.23
Matches are distributed among these distances:
39 1 0.01
40 1 0.01
41 1 0.01
42 2 0.03
43 40 0.50
44 30 0.38
46 1 0.01
47 4 0.05
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.34
Consensus pattern (43 bp):
CTACTGCTTAGGGAGATAAGATCCTCAATTTTGATCTGTTACC
Found at i:29528455 original size:87 final size:86
Alignment explanation
Indices: 29528306--29528589 Score: 341
Period size: 87 Copynumber: 3.4 Consensus size: 86
29528296 ATACTTTAAC
** * * * *
29528306 CTGTTACCCTACTATTTAGGGGGTTAAGGC--G-CATCTTCGATCTGCTCCACTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGGATTAAGGCAAGTCGTCGTCGATCTGCTCCGCTACTGCTTAGGG
29528368 AGATAAGATCCT-CAATTTTGAT
66 AGATAAGAT-CTACAATTTT-AT
* * *
29528390 CTGTTACCCTACTGCTTAAGGGATTAAGGCAAGTCGTCGTTGATCTGTTCCGCTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGGATTAAGGCAAGTCGTCGTCGATCTGCTCCGCTACTGCTTAGGG
*
29528455 AGATAAGATCTATAATTTTAT
66 AGATAAGATCTACAATTTTAT
* * *
29528476 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCGTCGTCGATCTGCTCTGCTACTGCTTAGG
1 -CTGTTACCCTACTGCTTAGGGGATTAAGGCAAGTCGTCGTCGATCTGCTCCGCTACTGCTTAGG
* * *
29528541 GAGATAAGATTTGCAA----AC
65 GAGATAAGATCTACAATTTTAT
29528559 CTGTTACCCTACTGCTTAGGGGATTAAGGCA
1 CTGTTACCCTACTGCTTAGGGGATTAAGGCA
29528590 CTGAATTTTG
Statistics
Matches: 173, Mismatches: 22, Indels: 12
0.84 0.11 0.06
Matches are distributed among these distances:
82 29 0.17
83 1 0.01
84 26 0.15
86 5 0.03
87 112 0.65
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.32
Consensus pattern (86 bp):
CTGTTACCCTACTGCTTAGGGGATTAAGGCAAGTCGTCGTCGATCTGCTCCGCTACTGCTTAGGG
AGATAAGATCTACAATTTTAT
Found at i:29529499 original size:1 final size:1
Alignment explanation
Indices: 29529489--29529569 Score: 63
Period size: 1 Copynumber: 81.0 Consensus size: 1
29529479 GGCCTCTCCA
* * * * * * * * * *
29529489 TTTTTCTTTTTTCTTTTTTTCTTTTTTTTTTCTTTTTTTCTCTTTTTCTTTTCTTTTTTTCTTCT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
*
29529554 TTTTTTCTTTTTTTTT
1 TTTTTTTTTTTTTTTT
29529570 GAAATAGAAG
Statistics
Matches: 58, Mismatches: 22, Indels: 0
0.73 0.28 0.00
Matches are distributed among these distances:
1 58 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (1 bp):
T
Found at i:29529506 original size:8 final size:8
Alignment explanation
Indices: 29529489--29529567 Score: 90
Period size: 8 Copynumber: 9.6 Consensus size: 8
29529479 GGCCTCTCCA
29529489 TTTTTC-T
1 TTTTTCTT
29529496 TTTTTCTT
1 TTTTTCTT
29529504 TTTTTCTTTTT
1 TTTTTC---TT
29529515 TTTTTCTT
1 TTTTTCTT
*
29529523 TTTTTCTC
1 TTTTTCTT
29529531 TTTTTCTT
1 TTTTTCTT
29529539 TTCTTT-TT
1 TT-TTTCTT
*
29529547 TTCTTCTT
1 TTTTTCTT
29529555 TTTTTCTT
1 TTTTTCTT
29529563 TTTTT
1 TTTTT
29529568 TTGAAATAGA
Statistics
Matches: 62, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
7 8 0.13
8 43 0.69
9 3 0.05
11 8 0.13
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (8 bp):
TTTTTCTT
Found at i:29529518 original size:11 final size:11
Alignment explanation
Indices: 29529489--29529569 Score: 87
Period size: 11 Copynumber: 7.5 Consensus size: 11
29529479 GGCCTCTCCA
*
29529489 TTTTTCTTTT-
1 TTTTTTTTTTC
*
29529499 TTCTTTTTTTC
1 TTTTTTTTTTC
29529510 TTTTTTTTTTC
1 TTTTTTTTTTC
*
29529521 -TTTTTTTCTC
1 TTTTTTTTTTC
*
29529531 TTTTTCTTTTC
1 TTTTTTTTTTC
*
29529542 TTTTTTTCTTC
1 TTTTTTTTTTC
29529553 TTTTTTTCTTT-
1 TTTTTTT-TTTC
29529564 TTTTTT
1 TTTTTT
29529570 GAAATAGAAG
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
10 17 0.29
11 40 0.68
12 2 0.03
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (11 bp):
TTTTTTTTTTC
Found at i:29529519 original size:19 final size:19
Alignment explanation
Indices: 29529490--29529567 Score: 120
Period size: 19 Copynumber: 3.9 Consensus size: 19
29529480 GCCTCTCCAT
29529490 TTTTCTTTTTTCTTTTTTTC
1 TTTT-TTTTTTCTTTTTTTC
29529510 TTTTTTTTTTCTTTTTTTC
1 TTTTTTTTTTCTTTTTTTC
29529529 TCTTTTTCTTTTCTTTTTTTC
1 T-TTTTT-TTTTCTTTTTTTC
*
29529550 TTCTTTTTTTCTTTTTTT
1 TTTTTTTTTTCTTTTTTT
29529568 TTGAAATAGA
Statistics
Matches: 55, Mismatches: 1, Indels: 5
0.90 0.02 0.08
Matches are distributed among these distances:
19 28 0.51
20 13 0.24
21 14 0.25
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (19 bp):
TTTTTTTTTTCTTTTTTTC
Found at i:29535365 original size:17 final size:18
Alignment explanation
Indices: 29535312--29535405 Score: 138
Period size: 18 Copynumber: 5.3 Consensus size: 18
29535302 AATCATATAT
*
29535312 TCTAAGATTGTATATCATA
1 TCTAAGATTG-CTATCATA
*
29535331 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
29535349 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
29535366 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
29535384 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
29535401 TCTAA
1 TCTAA
29535406 CATATCTAAG
Statistics
Matches: 69, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
17 27 0.39
18 32 0.46
19 10 0.14
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.38
Consensus pattern (18 bp):
TCTAAGATTGCTATCATA
Found at i:29535370 original size:35 final size:35
Alignment explanation
Indices: 29535312--29535405 Score: 170
Period size: 35 Copynumber: 2.6 Consensus size: 35
29535302 AATCATATAT
29535312 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
29535349 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
29535384 TCTAAGATTGTATCATATCTAA
1 TCTAAGATTGTATCATATCTAA
29535406 CATATCTAAG
Statistics
Matches: 57, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
35 47 0.82
37 10 0.18
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.38
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:29539682 original size:23 final size:23
Alignment explanation
Indices: 29539652--29539695 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
29539642 CTTAGGGGGA
*
29539652 AAGAGTTCTTTTACTGAAATGTT
1 AAGAGTTCTTTTACAGAAATGTT
29539675 AAGAGTTCTTTTACAGAAATG
1 AAGAGTTCTTTTACAGAAATG
29539696 ATGAGTGAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.34, C:0.09, G:0.18, T:0.39
Consensus pattern (23 bp):
AAGAGTTCTTTTACAGAAATGTT
Found at i:29542545 original size:26 final size:26
Alignment explanation
Indices: 29542509--29542567 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 26
29542499 CAATGTTTTT
*
29542509 GAAAAATGCTTTTGAAAAATACTATG
1 GAAAAGTGCTTTTGAAAAATACTATG
* * * *
29542535 GAAAAGTGCTTTTGAGAAGTACTTTT
1 GAAAAGTGCTTTTGAAAAATACTATG
29542561 GAAAAGT
1 GAAAAGT
29542568 TTGGTTTAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.41, C:0.07, G:0.20, T:0.32
Consensus pattern (26 bp):
GAAAAGTGCTTTTGAAAAATACTATG
Found at i:29542567 original size:13 final size:13
Alignment explanation
Indices: 29542505--29542567 Score: 63
Period size: 13 Copynumber: 4.8 Consensus size: 13
29542495 TTAGCAATGT
* *
29542505 TTTTGAAAAATGC
1 TTTTGAAAAGTAC
*
29542518 TTTTGAAAAATAC
1 TTTTGAAAAGTAC
* * *
29542531 TATGGAAAAGTGC
1 TTTTGAAAAGTAC
*
29542544 TTTTGAGAAGTAC
1 TTTTGAAAAGTAC
29542557 TTTTGAAAAGT
1 TTTTGAAAAGT
29542568 TTGGTTTAAA
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
13 40 1.00
ACGTcount: A:0.38, C:0.06, G:0.19, T:0.37
Consensus pattern (13 bp):
TTTTGAAAAGTAC
Found at i:29544543 original size:19 final size:19
Alignment explanation
Indices: 29544505--29544543 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
29544495 AGCAAGCAAC
*
29544505 TTGAGTTGAGCTCGCACTT
1 TTGAGTTGAGCTAGCACTT
29544524 TTGA-TTGAGCTAGCAGCTT
1 TTGAGTTGAGCTAGCA-CTT
29544543 T
1 T
29544544 AGGTGAGCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.18, C:0.18, G:0.26, T:0.38
Consensus pattern (19 bp):
TTGAGTTGAGCTAGCACTT
Found at i:29549989 original size:40 final size:40
Alignment explanation
Indices: 29549912--29550000 Score: 101
Period size: 40 Copynumber: 2.2 Consensus size: 40
29549902 AATTTATATT
* *
29549912 TAATACAAGAAAATATTTATTATATTTTC-CTGTGTTTTTG
1 TAATATAAGAAAATATTTATTATATTTTCGGTGT-TTTTTG
* *
29549952 TAATATAATAAAATATTTATTATATTTAT-GGTAGTTTTTTT
1 TAATATAAGAAAATATTTATTATATTT-TCGGT-GTTTTTTG
29549993 TAATATAA
1 TAATATAA
29550001 ATATTTATAA
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
40 25 0.60
41 15 0.36
42 2 0.05
ACGTcount: A:0.37, C:0.03, G:0.08, T:0.52
Consensus pattern (40 bp):
TAATATAAGAAAATATTTATTATATTTTCGGTGTTTTTTG
Found at i:29560106 original size:40 final size:40
Alignment explanation
Indices: 29559995--29560211 Score: 228
Period size: 40 Copynumber: 5.5 Consensus size: 40
29559985 CGGATGATAA
* * *
29559995 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATA-T
* * *
29560035 CCGGGCTAAG-CCCGAAGGCAATT-GTGTGAGTTATTATAC
1 CCGGGCTAAGTCCCGAAGGC-ATTCGTGCGAGTTACTATAT
* * *
29560074 CCGGGCTAATTCCCGAAGGCATTCGTGCGAGTTATTATGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* * *
29560114 TCGGGCTAAGTCCCGAAGGCATTGGTACGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
29560154 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
* *
29560194 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
29560212 TACTTGGCTT
Statistics
Matches: 149, Mismatches: 23, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
39 45 0.30
40 104 0.70
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:29567893 original size:6 final size:6
Alignment explanation
Indices: 29567882--29567927 Score: 92
Period size: 6 Copynumber: 7.7 Consensus size: 6
29567872 GAAGATTACC
29567882 ATATAA ATATAA ATATAA ATATAA ATATAA ATATAA ATATAA ATAT
1 ATATAA ATATAA ATATAA ATATAA ATATAA ATATAA ATATAA ATAT
29567928 CGGGAATAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 40 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (6 bp):
ATATAA
Found at i:29568338 original size:7 final size:7
Alignment explanation
Indices: 29568328--29568404 Score: 52
Period size: 7 Copynumber: 11.1 Consensus size: 7
29568318 GAGGTTCGAT
29568328 GTTTAAG
1 GTTTAAG
29568335 GTTTAAG
1 GTTTAAG
* * *
29568342 ATTCAAT
1 GTTTAAG
*
29568349 GTTCAA-
1 GTTTAAG
*
29568355 GTTCAAG
1 GTTTAAG
*
29568362 GTTTAGG
1 GTTTAAG
*
29568369 AGTTT-GG
1 -GTTTAAG
29568376 GATTTAAG
1 G-TTTAAG
29568384 GTTT-AG
1 GTTTAAG
29568390 GTTTAAG
1 GTTTAAG
29568397 GTTTAAG
1 GTTTAAG
29568404 G
1 G
29568405 GTTCAGGATT
Statistics
Matches: 58, Mismatches: 7, Indels: 10
0.77 0.09 0.13
Matches are distributed among these distances:
6 13 0.22
7 39 0.67
8 6 0.10
ACGTcount: A:0.27, C:0.04, G:0.29, T:0.40
Consensus pattern (7 bp):
GTTTAAG
Found at i:29573817 original size:82 final size:82
Alignment explanation
Indices: 29573678--29573832 Score: 222
Period size: 83 Copynumber: 1.9 Consensus size: 82
29573668 TCATATTAGT
* * ** *
29573678 TGCTGATTGTTCATGCATTTAAGGATTCAATGGATGGCATTAAAGGGGAAACATGCATTTGGGAC
1 TGCTGATTGTTCATGCACTTAAAGATTCAATGGACCGCATTAAAGGAGAAACATGCA-TTGGGAC
29573743 GTTCATGCAAGAGGGAGC
65 GTTCATGCAAGAGGGAGC
* * *
29573761 TGCTGATTGTTCATGTACTTAAAGATTC-ATGGACCGCATTTATGGAGAAACATGCATTGGGACG
1 TGCTGATTGTTCATGCACTTAAAGATTCAATGGACCGCATTAAAGGAGAAACATGCATTGGGACG
29573825 TTCATGCA
66 TTCATGCA
29573833 TGTGGAAGTT
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
81 16 0.25
82 23 0.36
83 25 0.39
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (82 bp):
TGCTGATTGTTCATGCACTTAAAGATTCAATGGACCGCATTAAAGGAGAAACATGCATTGGGACG
TTCATGCAAGAGGGAGC
Found at i:29575246 original size:15 final size:15
Alignment explanation
Indices: 29575214--29575242 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
29575204 ATTTTCTATG
29575214 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
29575229 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
29575243 ATTTTCGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:29579777 original size:33 final size:33
Alignment explanation
Indices: 29579735--29579800 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
29579725 TTCTTATGTG
29579735 TGTGAGACTTTAGTATTTAGTAAGACTATGCCT
1 TGTGAGACTTTAGTATTTAGTAAGACTATGCCT
*
29579768 TGTGAGACTTTAGTATTTAGTAAGACTTTGCCT
1 TGTGAGACTTTAGTATTTAGTAAGACTATGCCT
29579801 GTTGTGTCTA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.26, C:0.12, G:0.21, T:0.41
Consensus pattern (33 bp):
TGTGAGACTTTAGTATTTAGTAAGACTATGCCT
Found at i:29579795 original size:18 final size:18
Alignment explanation
Indices: 29579739--29579796 Score: 59
Period size: 18 Copynumber: 3.4 Consensus size: 18
29579729 TATGTGTGTG
29579739 AGACTTTAGTATTTAGTA
1 AGACTTTAGTATTTAGTA
* ** *
29579757 AGACTAT-G-CCTT-GTG
1 AGACTTTAGTATTTAGTA
29579772 AGACTTTAGTATTTAGTA
1 AGACTTTAGTATTTAGTA
29579790 AGACTTT
1 AGACTTT
29579797 GCCTGTTGTG
Statistics
Matches: 29, Mismatches: 8, Indels: 6
0.67 0.19 0.14
Matches are distributed among these distances:
15 8 0.28
16 3 0.10
17 3 0.10
18 15 0.52
ACGTcount: A:0.29, C:0.10, G:0.19, T:0.41
Consensus pattern (18 bp):
AGACTTTAGTATTTAGTA
Found at i:29582269 original size:72 final size:72
Alignment explanation
Indices: 29582182--29582322 Score: 210
Period size: 72 Copynumber: 2.0 Consensus size: 72
29582172 AATCCAAGTC
* * * * *
29582182 AGAATTGCACAAGGTTTGAGTACTTGCACTTGGGCGTGGCATATGGCCGTGTCCCTGTCGAGCCC
1 AGAATTGCACAAGGTTTGAGCACTTGCACATGGGCATGGCACACGGCCGTGTCCCTGTCGAGCCC
29582247 AAGTGTT
66 AAGTGTT
* * *
29582254 AGAATTGCACAAGGTTTGAGCACTTGCACATGGGCATGGCACACGGCGGTGTCCCTGTTGATCCC
1 AGAATTGCACAAGGTTTGAGCACTTGCACATGGGCATGGCACACGGCCGTGTCCCTGTCGAGCCC
29582319 AAGT
66 AAGT
29582323 CTAGTTTTAC
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
72 61 1.00
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.26
Consensus pattern (72 bp):
AGAATTGCACAAGGTTTGAGCACTTGCACATGGGCATGGCACACGGCCGTGTCCCTGTCGAGCCC
AAGTGTT
Found at i:29585758 original size:43 final size:43
Alignment explanation
Indices: 29585710--29585864 Score: 142
Period size: 43 Copynumber: 3.7 Consensus size: 43
29585700 TGTGTCCTCG
* *
29585710 TGTAAGACCACGTCTGGGACGTTGGCATCAATATGTGATTACA
1 TGTAAGACCACGTCTGGGACGTCGGCATCAATATTTGATTACA
* * * * * *
29585753 TGTAAGACCATGTTTGGGACATCGGTATC-GTATTTGATT-CG
1 TGTAAGACCACGTCTGGGACGTCGGCATCAATATTTGATTACA
*
29585794 TGTAAGACC-CTGTCTGGGACAG-CGGTATCAAT-TTTAGA-TAGCA
1 TGTAAGACCAC-GTCTGGGAC-GTCGGCATCAATATTT-GATTA-CA
*
29585837 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTCGGCAT
29585865 TATACGATAT
Statistics
Matches: 89, Mismatches: 15, Indels: 16
0.74 0.12 0.13
Matches are distributed among these distances:
41 29 0.33
42 12 0.13
43 47 0.53
44 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTCGGCATCAATATTTGATTACA
Found at i:29585812 original size:41 final size:42
Alignment explanation
Indices: 29585707--29585825 Score: 125
Period size: 41 Copynumber: 2.8 Consensus size: 42
29585697 ATATGTGTCC
* * *
29585707 TCGTGTAAGACCAC-GTCTGGGACGTTGGCATCAATATGTGAT
1 TCGTGTAAGACC-CTGTCTGGGACATCGGTATCAATATGTGAT
* * * * *
29585749 TACATGTAAGACCATGTTTGGGACATCGGTATC-GTATTTGAT
1 T-CGTGTAAGACCCTGTCTGGGACATCGGTATCAATATGTGAT
*
29585791 TCGTGTAAGACCCTGTCTGGGACAGCGGTATCAAT
1 TCGTGTAAGACCCTGTCTGGGACATCGGTATCAAT
29585826 TTTAGATAGC
Statistics
Matches: 61, Mismatches: 13, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
41 27 0.44
42 10 0.16
43 24 0.39
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.30
Consensus pattern (42 bp):
TCGTGTAAGACCCTGTCTGGGACATCGGTATCAATATGTGAT
Found at i:29589275 original size:5 final size:5
Alignment explanation
Indices: 29589257--29589382 Score: 243
Period size: 5 Copynumber: 25.0 Consensus size: 5
29589247 TTTCTTTTAT
29589257 ATATA ATAATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA AT-ATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
29589308 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
29589358 ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA
29589383 CTTAATTATT
Statistics
Matches: 120, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
5 115 0.96
6 5 0.04
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:29592745 original size:27 final size:27
Alignment explanation
Indices: 29592674--29592814 Score: 180
Period size: 27 Copynumber: 5.3 Consensus size: 27
29592664 AGCATGGCTG
* *
29592674 CCAGAACAGA-A-ATGTGACAGAGTCA
1 CCAGAACAGATATATGTGGCAGAGCCA
29592699 CCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGA-ACAGATATAT-GTGGCAGAGCCA
29592727 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCA
* *
29592754 CCAGATCAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCA
* * *
29592781 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCA
29592808 CCAGAAC
1 CCAGAAC
29592815 GCTTCCTCCA
Statistics
Matches: 106, Mismatches: 6, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
25 5 0.05
26 5 0.05
27 79 0.75
28 17 0.16
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.17
Consensus pattern (27 bp):
CCAGAACAGATATATGTGGCAGAGCCA
Found at i:29594470 original size:26 final size:26
Alignment explanation
Indices: 29594434--29594543 Score: 170
Period size: 26 Copynumber: 4.2 Consensus size: 26
29594424 CATGAAATTC
29594434 TTATCATGAAACATTTACCTAA-CTCA
1 TTATCATGAAACATTTACCTAACCT-A
*
29594460 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
29594486 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
29594512 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCTA
29594538 TTATCA
1 TTATCA
29594544 ATTTGTACCA
Statistics
Matches: 79, Mismatches: 3, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
26 76 0.96
27 3 0.04
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:29598401 original size:83 final size:81
Alignment explanation
Indices: 29598305--29598459 Score: 211
Period size: 83 Copynumber: 1.9 Consensus size: 81
29598295 GTTCACATTG
* * * *
29598305 GCTGCTGATTGTTCATGTATTTGAAGATTCAATGGACGACATTAAAGGGGAAACATGCATTTGGG
1 GCTGCTAATTGTTCATGTACTTGAAGATTC-ATGGACCACATTAAAGGAGAAACATGCA-TTGGG
*
29598370 AGGTTCATGTAAGAGGGA
64 ACGTTCATGTAAGAGGGA
* * * *
29598388 GCTGCTAATTGTTCATGTACTTGAATATTCGTGGACCACATTTATGGAGAAACATGCATTGGGAC
1 GCTGCTAATTGTTCATGTACTTGAAGATTCATGGACCACATTAAAGGAGAAACATGCATTGGGAC
29598453 GTTCATG
66 GTTCATG
29598460 CATGTGGGAG
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
81 13 0.21
82 23 0.37
83 27 0.43
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.31
Consensus pattern (81 bp):
GCTGCTAATTGTTCATGTACTTGAAGATTCATGGACCACATTAAAGGAGAAACATGCATTGGGAC
GTTCATGTAAGAGGGA
Found at i:29599797 original size:43 final size:42
Alignment explanation
Indices: 29599749--29599911 Score: 161
Period size: 43 Copynumber: 3.8 Consensus size: 42
29599739 ATCAAGATGT
* *
29599749 GATTACATGTAAGACCATGTTTGGGACATTGGCATTGTATTG
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTG
* *
29599791 AGATTACGTGTAAGACCATGTTTGGGACATTGGCATCGTTAATT-
1 -GATTACATGTAAGACCATGTCTGGGACATTGGCATCG-T-ATTG
* * * *
29599835 GATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCG-ATATG
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT-TG
* * *
29599877 TGATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 -GATTACATGTAAGACCATGTCTGGGACATTGGCAT
29599912 TGTACGAGTT
Statistics
Matches: 103, Mismatches: 12, Indels: 11
0.82 0.10 0.09
Matches are distributed among these distances:
40 2 0.02
41 1 0.01
42 6 0.06
43 90 0.87
44 1 0.01
45 3 0.03
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.32
Consensus pattern (42 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTG
Found at i:29607424 original size:267 final size:267
Alignment explanation
Indices: 29606937--29607470 Score: 996
Period size: 267 Copynumber: 2.0 Consensus size: 267
29606927 AAGGGAGTGT
29606937 GTGCGACTTGTTTATTTCAAGAATAGGCTGGATTCACCCAGTTGTACTTATATTTAATTATAACT
1 GTGCGACTTGTTTATTTCAAGAATAGGCTGGATTCACCCAGTTGTACTTATATTTAATTATAACT
*
29607002 AGGAAAGAAAAGAGTGCATGATCTCGCGAATTACTTCTGAATAAAATTTTAAAATCATATTATAG
66 AGGAAAGAAAAGAGTGCATGATCCCGCGAATTACTTCTGAATAAAATTTTAAAATCATATTATAG
* *
29607067 GACCATAGCATTTCATGATTCATTGATACATCGACTTTTATTCTTTATTAACTAATAATTTGGGA
131 GACCATAGCATTTCATGATTCATTGATACATCGACTTTGATTCTTTATTAACCAATAATTTGGGA
*
29607132 CCATTAACATGGTTAAGGTCAAACCTGTTTGATTAGTTATAACTATATTGAATAAAAAATTCAAA
196 CCATTAACATGGTTAAGGCCAAACCTGTTTGATTAGTTATAACTATATTGAATAAAAAATTCAAA
29607197 ATTTTGA
261 ATTTTGA
*
29607204 GTGCTACTTGTTTATTTCAAGAATAGGCTGGATTCACCCAGTTGTACTTATATTTAATTATAACT
1 GTGCGACTTGTTTATTTCAAGAATAGGCTGGATTCACCCAGTTGTACTTATATTTAATTATAACT
29607269 AGGAAAGAAAAGAGTGCATGATCCCGCGAATTACTTCTGAATAAAATTTTAAAATCATATTATAG
66 AGGAAAGAAAAGAGTGCATGATCCCGCGAATTACTTCTGAATAAAATTTTAAAATCATATTATAG
*
29607334 GACCATAGCATTTCGTGATTCATTGATACATCGACTTTGATTCTTTATTAACCAATAATTTGGGA
131 GACCATAGCATTTCATGATTCATTGATACATCGACTTTGATTCTTTATTAACCAATAATTTGGGA
* *
29607399 CCATTAACATGGTTAAGGCCAAACCTGTTTGATTAGTTATAACTATTTTGAATAAAAATTTCAAA
196 CCATTAACATGGTTAAGGCCAAACCTGTTTGATTAGTTATAACTATATTGAATAAAAAATTCAAA
29607464 ATTTTGA
261 ATTTTGA
29607471 CTAGATCCTC
Statistics
Matches: 259, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
267 259 1.00
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.37
Consensus pattern (267 bp):
GTGCGACTTGTTTATTTCAAGAATAGGCTGGATTCACCCAGTTGTACTTATATTTAATTATAACT
AGGAAAGAAAAGAGTGCATGATCCCGCGAATTACTTCTGAATAAAATTTTAAAATCATATTATAG
GACCATAGCATTTCATGATTCATTGATACATCGACTTTGATTCTTTATTAACCAATAATTTGGGA
CCATTAACATGGTTAAGGCCAAACCTGTTTGATTAGTTATAACTATATTGAATAAAAAATTCAAA
ATTTTGA
Found at i:29608584 original size:302 final size:302
Alignment explanation
Indices: 29607808--29608717 Score: 1592
Period size: 303 Copynumber: 3.0 Consensus size: 302
29607798 TGCCTACATG
*
29607808 AAAAGATTCCTTATCTAAAGATTTGACTCTTTTTATAAACTCCTTACTAAAATTTCTTCAGTTCA
1 AAAAGATTCCTTATTTAAAGATTTGACTCTTTTTATAAACTCCTTACTAAAATTTCTTCAGTTCA
* *
29607873 TTGATAAAACTCCAATCAGTATACAATTCATCATAAAACAATTTTTCTGGTGTGAATTTTTTTTT
66 TTGATAAAACTCCAATCATTATACAATTCATCATAAAACAATTTCTCTGGTGTGAATTTTTTTTT
* * *
29607938 TGTATTATTTCCCCCAAAGTTGCTAAACTAGGTGGATACGTAAAAGATATTTTTTTCTTTTCCAT
131 TGTATCATTTTCCCAAAAGTTGCTAAACTAGGTGGATACGTAAAAGATATTTTTTTCTTTTCCAT
29608003 CACTTTGACATGTATAAAAAAAA-ATTGTGACATTTCATTTTTTATAGCATTTTCAACCCTGTC-
196 CACTTTGACATGTATAAAAAAAATATTGTGACATTTCATTTTTTATAGCATTTTCAACCCTGTCA
* *
29608066 TTTTTTATATATTGCAAAGGTCGATTCCATCGTTTAGAGTAA
261 TTTTTTATATATCGCAAAGGTCGATTCCATCGTTTAGAATAA
* *
29608108 AAAAGATTCCTTATTTAAAGATTTGGCTCTTTTTATAAACTCCTTACTAAAATTTATTCAGTTCA
1 AAAAGATTCCTTATTTAAAGATTTGACTCTTTTTATAAACTCCTTACTAAAATTTCTTCAGTTCA
29608173 TTGATAAAACTCCAATCATTATACAATTCATCATAAAACAATTTCTCTGGTGTGAATGTTTTTTT
66 TTGATAAAACTCCAATCATTATACAATTCATCATAAAACAATTTCTCTGGTGTGAAT-TTTTTTT
* *
29608238 TTGTATCATTTTCCTAAAAGTTGCTAAACTAGGTGGATACGTAAAAGATATTTTTTTCTTTTTCA
130 TTGTATCATTTTCCCAAAAGTTGCTAAACTAGGTGGATACGTAAAAGATATTTTTTTCTTTTCCA
*
29608303 TCACTTTGACATGTATAAAAAAAATATTGTGACATTTCATTTCTTATAGCATTTTCAACCCTGTC
195 TCACTTTGACATGTATAAAAAAAATATTGTGACATTTCATTTTTTATAGCATTTTCAACCCTGTC
*
29608368 ATTTTTTATTTATCGCAAAGGTCGATTCCATCGTTTAGAATAA
260 ATTTTTTATATATCGCAAAGGTCGATTCCATCGTTTAGAATAA
29608411 AAAAGATTCCTTATTTAAAGATTTGACTCTTTTTATAAACTCCTTACTAAAATTTCTTCAGTTCA
1 AAAAGATTCCTTATTTAAAGATTTGACTCTTTTTATAAACTCCTTACTAAAATTTCTTCAGTTCA
*
29608476 TTGATAAAACTCCAATCATTATACAATTCATCATAAAACAATTTCTCTAGTGTGAATTTTTTTTT
66 TTGATAAAACTCCAATCATTATACAATTCATCATAAAACAATTTCTCTGGTGTGAATTTTTTTTT
29608541 TGTATCATTTTCCCAAAAGTTGCTAAACTAGGTGGATACGTAAAAGATATTTTTTTTCTTTTCCA
131 TGTATCATTTTCCCAAAAGTTGCTAAACTAGGTGGATACGTAAAAGATA-TTTTTTTCTTTTCCA
* * *
29608606 TCACTTTGACATGTAT-AAAAAAATATTGTGACATTTCATTTTTTATAGCATTTTCAATCCGGTA
195 TCACTTTGACATGTATAAAAAAAATATTGTGACATTTCATTTTTTATAGCATTTTCAACCCTGTC
* *
29608670 ATTTTTTTATATATCGCAAAGGCCTATTCCATCGTTTAGAATAA
260 A-TTTTTTATATATCGCAAAGGTCGATTCCATCGTTTAGAATAA
29608714 AAAA
1 AAAA
29608718 TAAGTGTCAC
Statistics
Matches: 579, Mismatches: 26, Indels: 7
0.95 0.04 0.01
Matches are distributed among these distances:
300 117 0.20
301 91 0.16
302 140 0.24
303 231 0.40
ACGTcount: A:0.32, C:0.15, G:0.10, T:0.42
Consensus pattern (302 bp):
AAAAGATTCCTTATTTAAAGATTTGACTCTTTTTATAAACTCCTTACTAAAATTTCTTCAGTTCA
TTGATAAAACTCCAATCATTATACAATTCATCATAAAACAATTTCTCTGGTGTGAATTTTTTTTT
TGTATCATTTTCCCAAAAGTTGCTAAACTAGGTGGATACGTAAAAGATATTTTTTTCTTTTCCAT
CACTTTGACATGTATAAAAAAAATATTGTGACATTTCATTTTTTATAGCATTTTCAACCCTGTCA
TTTTTTATATATCGCAAAGGTCGATTCCATCGTTTAGAATAA
Found at i:29620051 original size:49 final size:49
Alignment explanation
Indices: 29619992--29620138 Score: 168
Period size: 51 Copynumber: 3.0 Consensus size: 49
29619982 GTAGACAAGG
* * * *
29619992 TTATCTGGTACGCATAGTAGCTTGCACATACTACTACACATGTGACCAA
1 TTATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAA
* * * **
29620041 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATTGAAA
1 TTATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGA--CCAA
** *
29620092 TTATTGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TTATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACC
29620139 TCACAATAGA
Statistics
Matches: 79, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
49 38 0.48
51 41 0.52
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (49 bp):
TTATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAA
Found at i:29620110 original size:51 final size:49
Alignment explanation
Indices: 29619992--29620131 Score: 163
Period size: 49 Copynumber: 2.8 Consensus size: 49
29619982 GTAGACAAGG
* * * * * *
29619992 TTATCTGGTACGCATAGTAGCTTGCACATACTACTACACATGTGACCAA
1 TTATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACAAA
* * *
29620041 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATTGAAA
1 TTATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGA--CAAA
**
29620092 TTATTGGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 TTATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACA
29620132 TGCGACCTCA
Statistics
Matches: 76, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
49 38 0.50
51 38 0.50
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (49 bp):
TTATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACAAA
Found at i:29623719 original size:20 final size:20
Alignment explanation
Indices: 29623694--29623743 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
29623684 GCTTGTACGA
*
29623694 TTCGGTGCCCTTGTTTACAC
1 TTCGGTGCCCTTGTTCACAC
* *
29623714 TTCGGTGTCCTTGTTCGCAC
1 TTCGGTGCCCTTGTTCACAC
*
29623734 TACGGTGCCC
1 TTCGGTGCCC
29623744 CTGTATGCAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.08, C:0.32, G:0.24, T:0.36
Consensus pattern (20 bp):
TTCGGTGCCCTTGTTCACAC
Found at i:29625056 original size:29 final size:29
Alignment explanation
Indices: 29625012--29625070 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
29625002 TACAAGTCAG
29625012 GCTGTTACACAACCTAGAACATGACCTAA
1 GCTGTTACACAACCTAGAACATGACCTAA
**
29625041 GCTGTTACACGGCCTAGAACATGACCTAA
1 GCTGTTACACAACCTAGAACATGACCTAA
29625070 G
1 G
29625071 ACAAGGGCGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.34, C:0.27, G:0.19, T:0.20
Consensus pattern (29 bp):
GCTGTTACACAACCTAGAACATGACCTAA
Found at i:29627009 original size:29 final size:29
Alignment explanation
Indices: 29626971--29627078 Score: 103
Period size: 29 Copynumber: 3.8 Consensus size: 29
29626961 AGACATTCAC
* *
29626971 TTAACTAAGATAGCCACAAGGGTATCCTT
1 TTAACAAAGATAGCCACAAAGGTATCCTT
* * *
29627000 TTAATAAAGATAGCCATAAAGGTGTCCTT
1 TTAACAAAGATAGCCACAAAGGTATCCTT
* * *
29627029 TTAACAAAGATAGCTACAAACG-CTCC-T
1 TTAACAAAGATAGCCACAAAGGTATCCTT
* *
29627056 TTAATAGAGATTAGCCACAAAGG
1 TTAACAAAGA-TAGCCACAAAGG
29627079 ATTTCTTTTA
Statistics
Matches: 64, Mismatches: 14, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
27 9 0.14
28 13 0.20
29 42 0.66
ACGTcount: A:0.39, C:0.19, G:0.17, T:0.26
Consensus pattern (29 bp):
TTAACAAAGATAGCCACAAAGGTATCCTT
Found at i:29627078 original size:57 final size:58
Alignment explanation
Indices: 29626999--29627169 Score: 145
Period size: 57 Copynumber: 3.0 Consensus size: 58
29626989 AGGGTATCCT
* *
29626999 TTTAATAAAGA-TAGCCATAAAGG-TGTCCTTTTAACAAAGATAGCTACAAACGC-TCC
1 TTTAATAGAGATTAGCCACAAAGGAT-TCCTTTTAACAAAGATAGCTACAAACGCTTCC
* * * ** *
29627055 TTTAATAGAGATTAGCCACAAAGGATTTCTTTTAATAGAGATCA-CTGTAAAGGCTTCC
1 TTTAATAGAGATTAGCCACAAAGGATTCCTTTTAACAAAGAT-AGCTACAAACGCTTCC
* * * * * *
29627113 TTATAATAGAGATCA-CCACAAAGGCTTCCATTTTAACATAGATTGCCACAAAGGCTT
1 TT-TAATAGAGATTAGCCACAAAGGATTCC-TTTTAACAAAGATAGCTACAAACGCTT
29627170 ACTTACAGAA
Statistics
Matches: 91, Mismatches: 17, Indels: 11
0.76 0.14 0.09
Matches are distributed among these distances:
56 10 0.11
57 31 0.34
58 19 0.21
59 31 0.34
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.29
Consensus pattern (58 bp):
TTTAATAGAGATTAGCCACAAAGGATTCCTTTTAACAAAGATAGCTACAAACGCTTCC
Found at i:29627091 original size:30 final size:29
Alignment explanation
Indices: 29626995--29627169 Score: 117
Period size: 29 Copynumber: 6.0 Consensus size: 29
29626985 CACAAGGGTA
* *
29626995 TCCTTTTAATAAAGAT-AGCCATAAAGG-T
1 TCCTTTTAATAGAGATCA-CCACAAAGGCT
* * * *
29627023 GTCCTTTTAACAAAGAT-AGCTACAAACGC-
1 -TCCTTTTAATAGAGATCA-CCACAAAGGCT
* *
29627052 TCC-TTTAATAGAGATTAGCCACAAAGGAT
1 TCCTTTTAATAGAGATCA-CCACAAAGGCT
* ***
29627081 TTCTTTTAATAGAGATCACTGTAAAGGCT
1 TCCTTTTAATAGAGATCACCACAAAGGCT
*
29627110 TCCTTATAATAGAGATCACCACAAAGGCT
1 TCCTTTTAATAGAGATCACCACAAAGGCT
* * **
29627139 TCCATTTTAACATAGATTGCCACAAAGGCT
1 TCC-TTTTAATAGAGATCACCACAAAGGCT
29627169 T
1 T
29627170 ACTTACAGAA
Statistics
Matches: 116, Mismatches: 25, Indels: 9
0.77 0.17 0.06
Matches are distributed among these distances:
27 10 0.09
28 12 0.10
29 59 0.51
30 35 0.30
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.30
Consensus pattern (29 bp):
TCCTTTTAATAGAGATCACCACAAAGGCT
Found at i:29630773 original size:43 final size:43
Alignment explanation
Indices: 29630706--29630815 Score: 166
Period size: 43 Copynumber: 2.6 Consensus size: 43
29630696 GCATTATAGG
* * * *
29630706 ATGCTAGGCTCAAAGGCCCAAATACACATCACCGGCACGAAGC
1 ATGCTAGGCACGAAGGCCCGAATACACATCACCGGCACAAAGC
* *
29630749 CTGCTAGGCACGAAGGCCCGAATACACATCACCGTCACAAAGC
1 ATGCTAGGCACGAAGGCCCGAATACACATCACCGGCACAAAGC
29630792 ATGCTAGGCACGAAGGCCCGAATA
1 ATGCTAGGCACGAAGGCCCGAATA
29630816 TAATTCCAGC
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.34, C:0.32, G:0.23, T:0.12
Consensus pattern (43 bp):
ATGCTAGGCACGAAGGCCCGAATACACATCACCGGCACAAAGC
Found at i:29631582 original size:18 final size:18
Alignment explanation
Indices: 29631559--29631594 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
29631549 ATTAGCCCAT
29631559 AGTCTTATAGCACTACAC
1 AGTCTTATAGCACTACAC
29631577 AGTCTTATAGCACTACAC
1 AGTCTTATAGCACTACAC
29631595 TTTTAATAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.28, G:0.11, T:0.28
Consensus pattern (18 bp):
AGTCTTATAGCACTACAC
Found at i:29636678 original size:22 final size:21
Alignment explanation
Indices: 29636648--29636694 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
29636638 TACAAATTAA
29636648 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
29636670 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
29636691 ATCT
1 ATCT
29636695 AAGATTGCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:29636688 original size:16 final size:16
Alignment explanation
Indices: 29636667--29636717 Score: 57
Period size: 19 Copynumber: 2.9 Consensus size: 16
29636657 ATTACAAGAT
29636667 CATATCTTCAAGATTG
1 CATATCTTCAAGATTG
29636683 CATATCATATCTAAGATTG
1 CATATC-T-TC-AAGATTG
*
29636702 CATATCCTTAAAGATT
1 CATAT-CTTCAAGATT
29636718 ATATTTCCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
16 6 0.20
17 7 0.23
18 3 0.10
19 13 0.43
20 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (16 bp):
CATATCTTCAAGATTG
Found at i:29636700 original size:19 final size:21
Alignment explanation
Indices: 29636665--29636707 Score: 72
Period size: 19 Copynumber: 2.1 Consensus size: 21
29636655 AGATTACAAG
29636665 ATCATATCTTCAAGATTGCAT
1 ATCATATCTTCAAGATTGCAT
29636686 ATCATATC-T-AAGATTGCAT
1 ATCATATCTTCAAGATTGCAT
29636705 ATC
1 ATC
29636708 CTTAAAGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 13 0.59
20 1 0.05
21 8 0.36
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (21 bp):
ATCATATCTTCAAGATTGCAT
Found at i:29639941 original size:46 final size:46
Alignment explanation
Indices: 29639891--29639983 Score: 159
Period size: 46 Copynumber: 2.0 Consensus size: 46
29639881 ATCTTAATTA
* *
29639891 GAAAATTTGTTCTCAATAAATTACATTAAATTAATTCCCAGGAAAG
1 GAAAATTTCTTCTCAAAAAATTACATTAAATTAATTCCCAGGAAAG
*
29639937 GAAAATTTCTTTTCAAAAAATTACATTAAATTAATTCCCAGGAAAG
1 GAAAATTTCTTCTCAAAAAATTACATTAAATTAATTCCCAGGAAAG
29639983 G
1 G
29639984 TTGGAGGGTT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.44, C:0.13, G:0.11, T:0.32
Consensus pattern (46 bp):
GAAAATTTCTTCTCAAAAAATTACATTAAATTAATTCCCAGGAAAG
Found at i:29656012 original size:23 final size:23
Alignment explanation
Indices: 29655969--29656013 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
29655959 GATCTGCTAA
**
29655969 GCCTTTGTGGCATTTTATGTTTG
1 GCCTTTGTGGCAAATTATGTTTG
*
29655992 GCCTTTGTGGCAAATTCTGTTT
1 GCCTTTGTGGCAAATTATGTTT
29656014 CATCTCATTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.11, C:0.16, G:0.24, T:0.49
Consensus pattern (23 bp):
GCCTTTGTGGCAAATTATGTTTG
Found at i:29667061 original size:20 final size:20
Alignment explanation
Indices: 29667036--29667081 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
29667026 ATTGGGCCTT
29667036 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
29667056 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
29667075 GCCCATA
1 GCCCATA
29667082 ACAAAACAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:29667090 original size:19 final size:20
Alignment explanation
Indices: 29667048--29667091 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
29667038 CCATATTAAC
** *
29667048 ACAGTTGGGCCCATTTCAAT
1 ACAGTTGGGCCCATAACAAA
29667068 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCATAACAAA
29667087 ACAGT
1 ACAGT
29667092 CTTATACGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (20 bp):
ACAGTTGGGCCCATAACAAA
Found at i:29669574 original size:19 final size:19
Alignment explanation
Indices: 29669550--29669588 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
29669540 TCTAGGATGC
*
29669550 ACATATAATTGGAGCCAAT
1 ACATATAATTAGAGCCAAT
29669569 ACATATAATTAGAGCCAAT
1 ACATATAATTAGAGCCAAT
29669588 A
1 A
29669589 TAAGAGAGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.46, C:0.15, G:0.13, T:0.26
Consensus pattern (19 bp):
ACATATAATTAGAGCCAAT
Found at i:29676275 original size:26 final size:23
Alignment explanation
Indices: 29676245--29676415 Score: 106
Period size: 22 Copynumber: 7.3 Consensus size: 23
29676235 GGACTCACCA
*
29676245 CAGCTCGTATGAGCTTACTGATATAT
1 CAGCTCATATGAGCTTACTG-T-T-T
*
29676271 CAGCTCATAAGAGCTTACTGTTTT
1 CAGCTCATATGAGCTTACTG-TTT
29676295 CAGCTCAT-TGGAGCTTACTGTTT
1 CAGCTCATAT-GAGCTTACTGTTT
* **
29676318 TAGCTGGTATGAGCTTACTG-TT
1 CAGCTCATATGAGCTTACTGTTT
* *
29676340 CAGCTGA-ATAGATCTTACTGTTT
1 CAGCTCATAT-GAGCTTACTGTTT
* *
29676363 -AGCTTGATA-GAGTTTA-TCG-TT
1 CAGC-TCATATGAGCTTACT-GTTT
29676384 CAGCTCAT-TAGAGCTTACTGTTCAT
1 CAGCTCATAT-GAGCTTACTGTT--T
29676409 CAGCTCA
1 CAGCTCA
29676416 GGGGGAGCTT
Statistics
Matches: 117, Mismatches: 14, Indels: 29
0.73 0.09 0.18
Matches are distributed among these distances:
21 8 0.07
22 35 0.30
23 25 0.21
24 21 0.18
25 9 0.08
26 19 0.16
ACGTcount: A:0.23, C:0.19, G:0.20, T:0.37
Consensus pattern (23 bp):
CAGCTCATATGAGCTTACTGTTT
Found at i:29676302 original size:24 final size:24
Alignment explanation
Indices: 29676245--29676339 Score: 104
Period size: 24 Copynumber: 3.9 Consensus size: 24
29676235 GGACTCACCA
* *
29676245 CAGCTCGTATGAGCTTACTGATATAT
1 CAGCTCATATGAGCTTACTG-T-TTT
*
29676271 CAGCTCATAAGAGCTTACTGTTTT
1 CAGCTCATATGAGCTTACTGTTTT
29676295 CAGCTCAT-TGGAGCTTACTGTTTT
1 CAGCTCATAT-GAGCTTACTGTTTT
**
29676319 -AGCTGGTATGAGCTTACTGTT
1 CAGCTCATATGAGCTTACTGTT
29676340 CAGCTGAATA
Statistics
Matches: 61, Mismatches: 6, Indels: 7
0.82 0.08 0.09
Matches are distributed among these distances:
23 17 0.28
24 25 0.41
25 1 0.02
26 18 0.30
ACGTcount: A:0.22, C:0.19, G:0.21, T:0.38
Consensus pattern (24 bp):
CAGCTCATATGAGCTTACTGTTTT
Found at i:29680569 original size:43 final size:42
Alignment explanation
Indices: 29680467--29680616 Score: 203
Period size: 42 Copynumber: 3.5 Consensus size: 42
29680457 AAAACGCCAC
* **
29680467 AAAAGATCATGACTTTTAGCATCGTTTGTGGGAAAGCG-CGCT
1 AAAAG-TCATGGCTTTTAGCGGCGTTTGTGGGAAAGCGCCGCT
29680509 AAAAGTCATGGCTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCT
1 AAAAGTCATGGCTTTTAGCGGCGTTTGTGGG-AAAGCGCCGCT
* * * *
29680552 AAAAGTCATGGCCTTTAGTGGCATTTGTGGGGAAGCGCCGCT
1 AAAAGTCATGGCTTTTAGCGGCGTTTGTGGGAAAGCGCCGCT
*
29680594 AAAAGTCACGGCTTTTAGCGGCG
1 AAAAGTCATGGCTTTTAGCGGCG
29680617 CTTTTGTTAC
Statistics
Matches: 95, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
41 23 0.24
42 40 0.42
43 32 0.34
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.26
Consensus pattern (42 bp):
AAAAGTCATGGCTTTTAGCGGCGTTTGTGGGAAAGCGCCGCT
Found at i:29681475 original size:13 final size:14
Alignment explanation
Indices: 29681449--29681477 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
29681439 ACTAACGATG
29681449 AATTAAACCATTAT
1 AATTAAACCATTAT
29681463 AATTAAA-CATTAT
1 AATTAAACCATTAT
29681476 AA
1 AA
29681478 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:29684048 original size:27 final size:27
Alignment explanation
Indices: 29684013--29684190 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
29684003 TAAATTGTAC
29684013 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * ** *
29684040 TGCAGTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
29684066 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
29684094 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
29684122 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
29684149 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
29684176 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
29684191 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:29684131 original size:82 final size:81
Alignment explanation
Indices: 29684014--29684169 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
29684004 AAATTGTACA
* * *
29684014 GCACTAAGTGTGCGATTTGACTATGTTGCAGTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
29684078 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
29684095 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
29684160 TGCGAGTTGA
65 TGCGAATTGA
29684170 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:29684181 original size:82 final size:81
Alignment explanation
Indices: 29684010--29684190 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
29684000 GATTAAATTG
* * *
29684010 TACAGCACTAAGTGTGCGATTTGACTATGTTGCAGTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
29684075 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
29684091 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
29684155 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
29684173 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
29684191 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:29688920 original size:108 final size:108
Alignment explanation
Indices: 29688731--29688947 Score: 398
Period size: 108 Copynumber: 2.0 Consensus size: 108
29688721 ACAATGTGTT
*
29688731 AGTAGCTGAATTAAAAGCCAAACCATTATTGATTCATCAAATTCGTGAAGCTCAGAAAGTCGATG
1 AGTAGCTGAATTAAAAGCCAAACCATTATTGACTCATCAAATTCGTGAAGCTCAGAAAGTCGATG
*
29688796 ATGAATTGGTTGCAAAACGGGCTGAGTGTGCTCCAAACAAGGA
66 ATGAATTGGTTGCAAAACGAGCTGAGTGTGCTCCAAACAAGGA
29688839 AGTAGCTGAATTAAAAGCCAAACCATTATTGACTCATCAAATTCGTGAAGCTCAGAAAGTCGATG
1 AGTAGCTGAATTAAAAGCCAAACCATTATTGACTCATCAAATTCGTGAAGCTCAGAAAGTCGATG
* *
29688904 ATGAATTGGTTGCAAAACGAGCTGAGTGTGTTCCGAACAAGGA
66 ATGAATTGGTTGCAAAACGAGCTGAGTGTGCTCCAAACAAGGA
29688947 A
1 A
29688948 TCGGAGTTTC
Statistics
Matches: 105, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
108 105 1.00
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.24
Consensus pattern (108 bp):
AGTAGCTGAATTAAAAGCCAAACCATTATTGACTCATCAAATTCGTGAAGCTCAGAAAGTCGATG
ATGAATTGGTTGCAAAACGAGCTGAGTGTGCTCCAAACAAGGA
Found at i:29689351 original size:93 final size:93
Alignment explanation
Indices: 29689192--29689376 Score: 334
Period size: 93 Copynumber: 2.0 Consensus size: 93
29689182 ACGGAACATC
*
29689192 AAGTGCCTTCAGGGTTACTTCAGCCGATCATGATACCCGAGTGGAAATGGGACCGAGTCACAATG
1 AAGTGCCTTCAGGATTACTTCAGCCGATCATGATACCCGAGTGGAAATGGGACCGAGTCACAATG
* *
29689257 GACTTTGTGTCCGGACTGCCATTGTCAA
66 GACCTTGTGTCCGAACTGCCATTGTCAA
*
29689285 AAGTGCCTTCAGGATTACTTCAGCCGATCATGATACCCGAGTGGAAATGGGATCGAGTCACAATG
1 AAGTGCCTTCAGGATTACTTCAGCCGATCATGATACCCGAGTGGAAATGGGACCGAGTCACAATG
29689350 GACCTTGTGTCCGAACTGCCATTGTCA
66 GACCTTGTGTCCGAACTGCCATTGTCA
29689377 GCAAGTAAGA
Statistics
Matches: 88, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 88 1.00
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (93 bp):
AAGTGCCTTCAGGATTACTTCAGCCGATCATGATACCCGAGTGGAAATGGGACCGAGTCACAATG
GACCTTGTGTCCGAACTGCCATTGTCAA
Found at i:29689507 original size:78 final size:78
Alignment explanation
Indices: 29689378--29689532 Score: 283
Period size: 78 Copynumber: 2.0 Consensus size: 78
29689368 CCATTGTCAG
* *
29689378 CAAGTAAGAAGGATGCGATTTGGGTTATTGTTGATAGACTGACTAAGTCGGCTCACTTTATCCCC
1 CAAGTAAGAAGGATGCAATTTGGGTTATGGTTGATAGACTGACTAAGTCGGCTCACTTTATCCCC
29689443 GTGCGTACGGATA
66 GTGCGTACGGATA
*
29689456 CAAGTAAGAAGGATGCAATTTGGGTTGTGGTTGATAGACTGACTAAGTCGGCTCACTTTATCCCC
1 CAAGTAAGAAGGATGCAATTTGGGTTATGGTTGATAGACTGACTAAGTCGGCTCACTTTATCCCC
29689521 GTGCGTACGGAT
66 GTGCGTACGGAT
29689533 CTTTCATTGG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
78 74 1.00
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (78 bp):
CAAGTAAGAAGGATGCAATTTGGGTTATGGTTGATAGACTGACTAAGTCGGCTCACTTTATCCCC
GTGCGTACGGATA
Found at i:29700735 original size:9 final size:9
Alignment explanation
Indices: 29700718--29700856 Score: 101
Period size: 9 Copynumber: 15.7 Consensus size: 9
29700708 ATATTTATGT
29700718 GTTATGTAA
1 GTTATGTAA
*
29700727 GTTAAGTAA
1 GTTATGTAA
*
29700736 GTTTTGTAA
1 GTTATGTAA
29700745 GTTATGTAA
1 GTTATGTAA
*
29700754 GATATG--A
1 GTTATGTAA
29700761 --TATGATAA
1 GTTATG-TAA
* *
29700769 -ATATTTAA
1 GTTATGTAA
*
29700777 GTATTATCTAA
1 G--TTATGTAA
29700788 GTTATGTAA
1 GTTATGTAA
29700797 GTTATGTAA
1 GTTATGTAA
29700806 GTTATGTAA
1 GTTATGTAA
*
29700815 GTTATGATAT
1 GTTATG-TAA
* *
29700825 GATATAT-A
1 GTTATGTAA
*
29700833 TTTATGTAA
1 GTTATGTAA
*
29700842 ATTATGTAA
1 GTTATGTAA
29700851 GTTATG
1 GTTATG
29700857 ATATGATATA
Statistics
Matches: 103, Mismatches: 18, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
5 4 0.04
7 1 0.01
8 8 0.08
9 77 0.75
10 6 0.06
11 7 0.07
ACGTcount: A:0.37, C:0.01, G:0.18, T:0.45
Consensus pattern (9 bp):
GTTATGTAA
Found at i:29700805 original size:61 final size:61
Alignment explanation
Indices: 29700708--29700856 Score: 217
Period size: 61 Copynumber: 2.4 Consensus size: 61
29700698 TTTCAAGTAT
* * *
29700708 ATATTTATGTGTTATGTAAGTTAAGTAAGTTTTGTAAGTTATGTAAGATATGATATGATAA
1 ATATTTATGTATTATGTAAGTTATGTAAGTTATGTAAGTTATGTAAGATATGATATGATAA
* * * *
29700769 ATATTTAAGTATTATCTAAGTTATGTAAGTTATGTAAGTTATGTAAGTTATGATATGATAT
1 ATATTTATGTATTATGTAAGTTATGTAAGTTATGTAAGTTATGTAAGATATGATATGATAA
29700830 ATATTTATGTAAATTATGTAAGTTATG
1 ATATTTATGT--ATTATGTAAGTTATG
29700857 ATATGATATA
Statistics
Matches: 77, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
61 63 0.82
63 14 0.18
ACGTcount: A:0.36, C:0.01, G:0.17, T:0.46
Consensus pattern (61 bp):
ATATTTATGTATTATGTAAGTTATGTAAGTTATGTAAGTTATGTAAGATATGATATGATAA
Found at i:29700838 original size:36 final size:36
Alignment explanation
Indices: 29700798--29700872 Score: 141
Period size: 36 Copynumber: 2.1 Consensus size: 36
29700788 GTTATGTAAG
*
29700798 TTATGTAAGTTATGTAAGTTATGATATGATATATAT
1 TTATGTAAATTATGTAAGTTATGATATGATATATAT
29700834 TTATGTAAATTATGTAAGTTATGATATGATATATAT
1 TTATGTAAATTATGTAAGTTATGATATGATATATAT
29700870 TTA
1 TTA
29700873 ATATTAAGAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.37, C:0.00, G:0.15, T:0.48
Consensus pattern (36 bp):
TTATGTAAATTATGTAAGTTATGATATGATATATAT
Found at i:29705228 original size:26 final size:26
Alignment explanation
Indices: 29705197--29705304 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
29705187 TGAAATGCCC
*
29705197 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
29705223 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
29705249 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
29705275 ATCATGGAACATTTAACTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
29705301 ATCA
1 ATCA
29705305 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.37, C:0.23, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:29706665 original size:20 final size:19
Alignment explanation
Indices: 29706622--29706664 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
29706612 TTATATTTCA
*
29706622 TTTTTATTTGTTATCCATG
1 TTTTTATTTGTTATCAATG
*
29706641 TTTTTATTTATTTATCAAT-
1 TTTTTATTT-GTTATCAATG
29706660 TTTTT
1 TTTTT
29706665 TTAAATCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.19, C:0.07, G:0.05, T:0.70
Consensus pattern (19 bp):
TTTTTATTTGTTATCAATG
Found at i:29706985 original size:14 final size:14
Alignment explanation
Indices: 29706884--29707009 Score: 60
Period size: 14 Copynumber: 8.9 Consensus size: 14
29706874 TTAATCTAAA
*
29706884 CCCTAAACCCTTAAT
1 CCCTAAA-CCTTAAC
* * *
29706899 CCTTAATCCTTAAA
1 CCCTAAACCTTAAC
29706913 CCCTAAACCTTGAA-
1 CCCTAAACCTT-AAC
* * *
29706927 TCCTAAAACATAAAC
1 CCCT-AAACCTTAAC
*
29706942 CCCT-AACTCTGAAC
1 CCCTAAAC-CTTAAC
* * *
29706956 CCCTAACCCCTGAC
1 CCCTAAACCTTAAC
29706970 CCCTAAACCTTAAC
1 CCCTAAACCTTAAC
* *
29706984 CCC-AACCCTTAAA
1 CCCTAAACCTTAAC
* *
29706997 CCATAATCCTTAA
1 CCCTAAACCTTAA
29707010 AATATAACTC
Statistics
Matches: 83, Mismatches: 22, Indels: 13
0.70 0.19 0.11
Matches are distributed among these distances:
13 13 0.16
14 53 0.64
15 17 0.20
ACGTcount: A:0.36, C:0.39, G:0.02, T:0.23
Consensus pattern (14 bp):
CCCTAAACCTTAAC
Found at i:29707028 original size:21 final size:21
Alignment explanation
Indices: 29706998--29707045 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
29706988 ACCCTTAAAC
*
29706998 CATAATCCTTAAAATATAACT
1 CATAAACCTTAAAATATAACT
29707019 CATAAACCTTAAAATATAACT
1 CATAAACCTTAAAATATAACT
29707040 CATAAA
1 CATAAA
29707046 TGAAGCCCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.52, C:0.19, G:0.00, T:0.29
Consensus pattern (21 bp):
CATAAACCTTAAAATATAACT
Found at i:29707075 original size:95 final size:95
Alignment explanation
Indices: 29706951--29707140 Score: 362
Period size: 95 Copynumber: 2.0 Consensus size: 95
29706941 CCCCTAACTC
29706951 TGAACCCCTAACCCCTGACCCCTAAACCTTAACCCCAACCCTTAAACCATAATCCTTAAAATATA
1 TGAACCCCTAACCCCTGACCCCTAAACCTTAACCCCAACCCTTAAACCATAATCCTTAAAATATA
29707016 ACTCATAAACCTTAAAATATAACTCATAAA
66 ACTCATAAACCTTAAAATATAACTCATAAA
* *
29707046 TGAAGCCCTAACCCCTGACCCCTAAACCTTGACCCCAACCCTTAAACCATAATCCTTAAAATATA
1 TGAACCCCTAACCCCTGACCCCTAAACCTTAACCCCAACCCTTAAACCATAATCCTTAAAATATA
29707111 ACTCATAAACCTTAAAATATAACTCATAAA
66 ACTCATAAACCTTAAAATATAACTCATAAA
29707141 CCTTAAACCA
Statistics
Matches: 93, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
95 93 1.00
ACGTcount: A:0.42, C:0.32, G:0.03, T:0.23
Consensus pattern (95 bp):
TGAACCCCTAACCCCTGACCCCTAAACCTTAACCCCAACCCTTAAACCATAATCCTTAAAATATA
ACTCATAAACCTTAAAATATAACTCATAAA
Found at i:29707123 original size:21 final size:21
Alignment explanation
Indices: 29707093--29707147 Score: 101
Period size: 21 Copynumber: 2.6 Consensus size: 21
29707083 ACCCTTAAAC
*
29707093 CATAATCCTTAAAATATAACT
1 CATAAACCTTAAAATATAACT
29707114 CATAAACCTTAAAATATAACT
1 CATAAACCTTAAAATATAACT
29707135 CATAAACCTTAAA
1 CATAAACCTTAAA
29707148 CCATTAACCA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.51, C:0.20, G:0.00, T:0.29
Consensus pattern (21 bp):
CATAAACCTTAAAATATAACT
Found at i:29717582 original size:11 final size:10
Alignment explanation
Indices: 29717550--29717603 Score: 58
Period size: 11 Copynumber: 5.4 Consensus size: 10
29717540 CATGAGATTT
29717550 TGATAT-ACA
1 TGATATGACA
*
29717559 TGATTTGACA
1 TGATATGACA
29717569 TGATATGCACA
1 TGATATG-ACA
*
29717580 TGATATG-TA
1 TGATATGACA
29717589 TGATATGTACA
1 TGATATG-ACA
29717600 TGAT
1 TGAT
29717604 GTATTCATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
9 13 0.35
10 9 0.24
11 15 0.41
ACGTcount: A:0.35, C:0.09, G:0.19, T:0.37
Consensus pattern (10 bp):
TGATATGACA
Found at i:29717726 original size:24 final size:25
Alignment explanation
Indices: 29717650--29717719 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
29717640 GAGGAAGTGT
* * *
29717650 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
29717675 AAAAGGGCTTTTCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
29717700 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
29717720 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:29717732 original size:24 final size:24
Alignment explanation
Indices: 29717649--29717732 Score: 89
Period size: 25 Copynumber: 3.4 Consensus size: 24
29717639 GGAGGAAGTG
* *
29717649 TAAAAGGGCTATGCCCCAGTTTACC
1 TAAAAGGGCTTTGCCCCAGTTTA-T
* *
29717674 GAAAAGGGCTTTTCCCCAGTTTAT
1 TAAAAGGGCTTTGCCCCAGTTTAT
*
29717698 CAAAAAGGGCTTTGCCCCAG-TTAT
1 -TAAAAGGGCTTTGCCCCAGTTTAT
29717722 TAAAAGAGGCT
1 TAAAAG-GGCT
29717733 AGGCCTCCAA
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
23 5 0.10
24 8 0.16
25 37 0.74
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCCAGTTTAT
Found at i:29718010 original size:29 final size:29
Alignment explanation
Indices: 29717972--29718047 Score: 143
Period size: 29 Copynumber: 2.6 Consensus size: 29
29717962 TGAATTATGA
*
29717972 AAAGGCTTCGGCCGAGTAATCGTTTAACG
1 AAAGGCTTCGGCCCAGTAATCGTTTAACG
29718001 AAAGGCTTCGGCCCAGTAATCGTTTAACG
1 AAAGGCTTCGGCCCAGTAATCGTTTAACG
29718030 AAAGGCTTCGGCCCAGTA
1 AAAGGCTTCGGCCCAGTA
29718048 TATGTTGAGA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 46 1.00
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (29 bp):
AAAGGCTTCGGCCCAGTAATCGTTTAACG
Found at i:29728820 original size:27 final size:27
Alignment explanation
Indices: 29728790--29728919 Score: 172
Period size: 27 Copynumber: 4.9 Consensus size: 27
29728780 ATTATCAAAG
* * *
29728790 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
29728817 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
29728844 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
29728871 TACCCTTGATTTAC-AGATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
29728897 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTACAAAATTACT
29728920 AAAATACCCT
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
26 22 0.25
27 65 0.75
ACGTcount: A:0.28, C:0.22, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTGTTT
Found at i:29728917 original size:53 final size:53
Alignment explanation
Indices: 29728790--29728945 Score: 195
Period size: 53 Copynumber: 2.9 Consensus size: 53
29728780 ATTATCAAAG
* * **
29728790 TACCCCCGATTTACATAATTACCGTTTTACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTTTACCCTTGATTTAC-AAATTACTGTTT
* * *
29728844 TACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAGATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTTTACCCTTGATTTACAAATTACTGTTT
*** *
29728897 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTAC
1 TACCCTCGATTTACAAAATTACTATTTTACCCTTGATTTAC-AAATTAC
29728946 CAAAATACCC
Statistics
Matches: 88, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
53 46 0.52
54 42 0.48
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.40
Consensus pattern (53 bp):
TACCCTCGATTTACAAAATTACTATTTTACCCTTGATTTACAAATTACTGTTT
Found at i:29728927 original size:27 final size:27
Alignment explanation
Indices: 29728817--29729227 Score: 201
Period size: 27 Copynumber: 15.2 Consensus size: 27
29728807 ATTACCGTTT
* * ****
29728817 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTATAAAATTACTAAAA
* ***
29728844 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAAAATTACTAAAA
* * * ****
29728871 TACCCTTGATTTA-CAGATTACTGTTT
1 TACCCTCGATTTATAAAATTACTAAAA
*
29728897 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* * * *
29728924 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* *
29728951 TACCCTCGA-TCAGTAAAATTACCAAAA
1 TACCCTCGATTTA-TAAAATTACTAAAA
* * *
29728978 TACCCTAG-TCTGTAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* * *
29729004 TACCC-CTGGTTTGTAAAATTACTGAAA
1 TACCCTC-GATTTATAAAATTACTAAAA
* * *
29729031 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* * *
29729058 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACTAAAA
* * * **
29729085 TACCACT-GGTTTGTGAAATTACCGAAA
1 TACC-CTCGATTTATAAAATTACTAAAA
* * *
29729112 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* *
29729139 TACCC-CTGATTTACAAAGTTAC-AGAAA
1 TACCCTC-GATTTATAAAATTACTA-AAA
* * *
29729166 TACCCTTGACTTTCTAAAAATTA-TGGAAA
1 TACCCTCGA-TTTAT-AAAATTACT-AAAA
* * * *
29729195 TACCATTGGTTTACAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
29729222 TACCCT
1 TACCCT
29729228 TGGTTTGTAG
Statistics
Matches: 307, Mismatches: 59, Indels: 36
0.76 0.15 0.09
Matches are distributed among these distances:
26 48 0.16
27 234 0.76
28 9 0.03
29 16 0.05
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.33
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACTAAAA
Found at i:29728944 original size:80 final size:81
Alignment explanation
Indices: 29728797--29728945 Score: 192
Period size: 80 Copynumber: 1.9 Consensus size: 81
29728787 AAGTACCCCC
* **** * *
29728797 GATTTACATAATTACCGTTTTACCCTTGATTTACAAAATTACTGTTTTACCCTCGATTTATAGAA
1 GATTTACATAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTCGATTTACAAAA
29728862 TTACTATTTTACCCTT
66 TTACTATTTTACCCTT
* * * *
29728878 GATTTACA-GATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAA
1 GATTTACATAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTCGATTTACAAAA
29728942 TTAC
66 TTAC
29728946 CAAAATACCC
Statistics
Matches: 57, Mismatches: 11, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
80 49 0.86
81 8 0.14
ACGTcount: A:0.32, C:0.19, G:0.08, T:0.41
Consensus pattern (81 bp):
GATTTACATAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTCGATTTACAAAA
TTACTATTTTACCCTT
Found at i:29729104 original size:81 final size:80
Alignment explanation
Indices: 29728911--29729145 Score: 346
Period size: 81 Copynumber: 2.9 Consensus size: 80
29728901 CTCGATTTAC
** * * **
29728911 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAA
1 AAAATTACTAAAATACCC-TGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
29728976 AATA-CCCTAGTCTGT
65 AATACCCCTAGTCTGT
*
29728991 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACTGAAATACCCTCAATTTGTAAAATTACCAA
1 AAAATTACTAAAATA-CCCTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
*
29729056 AATACCCCTAGTTTGT
65 AATACCCCTAGTCTGT
* *
29729072 AAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
1 AAAATTACTAAAATACC-CTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
29729137 AATACCCCT
65 AATACCCCT
29729146 GATTTACAAA
Statistics
Matches: 141, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
80 60 0.43
81 81 0.57
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (80 bp):
AAAATTACTAAAATACCCTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAA
ATACCCCTAGTCTGT
Found at i:29729230 original size:27 final size:27
Alignment explanation
Indices: 29728911--29729248 Score: 268
Period size: 27 Copynumber: 12.5 Consensus size: 27
29728901 CTCGATTTAC
* **
29728911 AAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCTTGGTTTGT
* * **
29728938 AAAATTACCAAAATACCCTCGATCAGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* *
29728965 AAAATTACCAAAATACCC-TAGTCTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* *
29728991 AAAATTACTAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
** ***
29729018 AAAATTACTGAAATACCCTCAATTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* *
29729045 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
29729072 AAAATTACCAAAATACCAC-TGGTTTGT
1 AAAATTACCAAAATACC-CTTGGTTTGT
* * ***
29729099 GAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* * **
29729126 AAAATTACCAAAATACCCCTGATTTAC
1 AAAATTACCAAAATACCCTTGGTTTGT
* * *
29729153 AAAGTTA-CAGAAATACCCTTGACTTTCT
1 AAAATTACCA-AAATACCCTTG-GTTTGT
*** * **
29729181 AAAAATTATGGAAATACCATTGGTTTAC
1 -AAAATTACCAAAATACCCTTGGTTTGT
*
29729209 AAAATTACTAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* *
29729236 AGATTTACCAAAA
1 AAAATTACCAAAA
29729249 CAACCTTGTA
Statistics
Matches: 246, Mismatches: 58, Indels: 14
0.77 0.18 0.04
Matches are distributed among these distances:
26 24 0.10
27 199 0.81
28 7 0.03
29 16 0.07
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTGGTTTGT
Found at i:29729317 original size:27 final size:27
Alignment explanation
Indices: 29729287--29729346 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
29729277 ACCTCTATTA
*
29729287 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAAAGACCGTAAAGCCCCTATAG
**
29729314 GGTAAAGTGACCGTAAAGCCCCTATAG
1 GGTAAAAAGACCGTAAAGCCCCTATAG
29729341 GGTAAA
1 GGTAAA
29729347 GTGACTGTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.37, C:0.20, G:0.27, T:0.17
Consensus pattern (27 bp):
GGTAAAAAGACCGTAAAGCCCCTATAG
Found at i:29729371 original size:27 final size:27
Alignment explanation
Indices: 29729295--29729378 Score: 107
Period size: 27 Copynumber: 3.1 Consensus size: 27
29729285 TAGGTAAAAA
29729295 GACCGTAAAGCCCCTGTAGGGTAAAGT
1 GACCGTAAAGCCCCTGTAGGGTAAAGT
*
29729322 GACCGTAAAGCCCCTATAGGGTAAAGT
1 GACCGTAAAGCCCCTGTAGGGTAAAGT
* * * *
29729349 GACTGTAATA-CCCTTGTATGGTAAAAT
1 GACCGTAA-AGCCCCTGTAGGGTAAAGT
29729376 GAC
1 GAC
29729379 GAATATGCCT
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
27 49 0.98
28 1 0.02
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.23
Consensus pattern (27 bp):
GACCGTAAAGCCCCTGTAGGGTAAAGT
Found at i:29730211 original size:26 final size:26
Alignment explanation
Indices: 29730181--29730278 Score: 162
Period size: 26 Copynumber: 3.8 Consensus size: 26
29730171 GAGGAAGTGC
*
29730181 AAAAGGGCTTATGCCCCAGTTTACCA
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
29730207 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
29730233 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
29730259 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
29730279 ATTAAAAAGC
Statistics
Matches: 67, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
25 10 0.15
26 57 0.85
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:29730482 original size:42 final size:42
Alignment explanation
Indices: 29730423--29730514 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
29730413 TAGTCTCCCC
* ** * *
29730423 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGTTATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
29730465 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
29730507 AAATGGGC
1 AAATGGGC
29730515 CTAAGGGCTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.28, C:0.14, G:0.22, T:0.36
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:29730615 original size:31 final size:31
Alignment explanation
Indices: 29730538--29730616 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
29730528 CGTTTACAGT
*
29730538 AAAGGCTTCGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
29730569 AAAGGCTTCAGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
29730600 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
29730617 AACCGTTAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:29733047 original size:23 final size:23
Alignment explanation
Indices: 29733021--29733075 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 23
29733011 ATTGAAACGA
*
29733021 TAAGCTCTGACGAGCTAA-ATCAG
1 TAAGCTCT-ACGAGCTAAGAACAG
*
29733044 TAAGCTCATACGAGTTAAGAACAG
1 TAAGCTC-TACGAGCTAAGAACAG
29733068 TAAGCTCT
1 TAAGCTCT
29733076 TTTGATCTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 16 0.57
24 12 0.43
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (23 bp):
TAAGCTCTACGAGCTAAGAACAG
Found at i:29735871 original size:20 final size:20
Alignment explanation
Indices: 29735848--29736014 Score: 134
Period size: 20 Copynumber: 8.8 Consensus size: 20
29735838 GTGGACCTAC
29735848 TGATGGCTTTGTGCCGCTAT
1 TGATGGCTTTGTGCCGCTAT
** *
29735868 TGATGGCTCAGTGCCACTAT
1 TGATGGCTTTGTGCCGCTAT
* * *
29735888 TGACGGCTTTATGCCACTAT
1 TGATGGCTTTGTGCCGCTAT
* *
29735908 TGATAGCTTTGTGCTGC---
1 TGATGGCTTTGTGCCGCTAT
29735925 T-A----TTTGTGCCGCTAT
1 TGATGGCTTTGTGCCGCTAT
* *
29735940 TGATGGCTTTGTGACACTAT
1 TGATGGCTTTGTGCCGCTAT
* *
29735960 TGATGTCTTTGTACCGCTAT
1 TGATGGCTTTGTGCCGCTAT
* * *
29735980 TGAAGGCTTCGTGCCGCTAC
1 TGATGGCTTTGTGCCGCTAT
*
29736000 TCATGGCTTTGTGCC
1 TGATGGCTTTGTGCC
29736015 ATATACTGAT
Statistics
Matches: 112, Mismatches: 27, Indels: 16
0.72 0.17 0.10
Matches are distributed among these distances:
12 9 0.08
15 1 0.01
16 2 0.02
17 1 0.01
20 99 0.88
ACGTcount: A:0.15, C:0.22, G:0.25, T:0.38
Consensus pattern (20 bp):
TGATGGCTTTGTGCCGCTAT
Found at i:29735958 original size:52 final size:52
Alignment explanation
Indices: 29735878--29735980 Score: 136
Period size: 52 Copynumber: 2.0 Consensus size: 52
29735868 TGATGGCTCA
* * *
29735878 GTGCCACTATTGACGGCTTTATGCCACTATTGATAG-CTTTGTGCTGCTATTT
1 GTGCCACTATTGACGGCTTTATGACACTATTGAT-GTCTTTGTACCGCTATTT
* * *
29735930 GTGCCGCTATTGATGGCTTTGTGACACTATTGATGTCTTTGTACCGCTATT
1 GTGCCACTATTGACGGCTTTATGACACTATTGATGTCTTTGTACCGCTATT
29735981 GAAGGCTTCG
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
51 1 0.02
52 43 0.98
ACGTcount: A:0.17, C:0.20, G:0.22, T:0.41
Consensus pattern (52 bp):
GTGCCACTATTGACGGCTTTATGACACTATTGATGTCTTTGTACCGCTATTT
Found at i:29735960 original size:32 final size:32
Alignment explanation
Indices: 29735899--29735960 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
29735889 GACGGCTTTA
*
29735899 TGCCACTATTGATAGCTTTGTGCTGCTATTTG
1 TGCCACTATTGATAGCTTTGTGCTACTATTTG
* *
29735931 TGCCGCTATTGATGGCTTTGTGAC-ACTATT
1 TGCCACTATTGATAGCTTTGTG-CTACTATT
29735961 GATGTCTTTG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
32 25 0.96
33 1 0.04
ACGTcount: A:0.16, C:0.19, G:0.23, T:0.42
Consensus pattern (32 bp):
TGCCACTATTGATAGCTTTGTGCTACTATTTG
Found at i:29736054 original size:26 final size:28
Alignment explanation
Indices: 29736005--29736066 Score: 85
Period size: 26 Copynumber: 2.3 Consensus size: 28
29735995 GCTACTCATG
*
29736005 GCTTTG-TGCCATATACTGATACTGGTA
1 GCTTTGTTGCCATATACTGATACTGGCA
*
29736032 GCTTTGTTG-CAT-TACTGTTACTGGCA
1 GCTTTGTTGCCATATACTGATACTGGCA
29736058 GCTTTGTTG
1 GCTTTGTTG
29736067 TGATATTATT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
26 21 0.66
27 9 0.28
28 2 0.06
ACGTcount: A:0.16, C:0.18, G:0.24, T:0.42
Consensus pattern (28 bp):
GCTTTGTTGCCATATACTGATACTGGCA
Found at i:29744102 original size:4 final size:4
Alignment explanation
Indices: 29744058--29744083 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
29744048 TAATAATAAT
29744058 AATA AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AA
29744084 AGAACAGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:29748013 original size:32 final size:32
Alignment explanation
Indices: 29747972--29748033 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
29747962 TGGCTCTTTA
29747972 GTACCAAAATTTTCATTATCACACACACTATG
1 GTACCAAAATTTTCATTATCACACACACTATG
*
29748004 GTACCAAAATTTTCATTATCACACATACTA
1 GTACCAAAATTTTCATTATCACACACACTA
29748034 ACATTTAACC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.39, C:0.24, G:0.05, T:0.32
Consensus pattern (32 bp):
GTACCAAAATTTTCATTATCACACACACTATG
Found at i:29749258 original size:15 final size:16
Alignment explanation
Indices: 29749238--29749270 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
29749228 ATATATATTT
29749238 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
29749253 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
29749270 T
1 T
29749271 ATAACCATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:29749356 original size:22 final size:22
Alignment explanation
Indices: 29749317--29749375 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
29749307 GTTTTAAGAA
*
29749317 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
29749338 TTGTTTTAATATTTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
29749360 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
29749376 GATTTATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 16 0.47
22 11 0.32
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:29749392 original size:26 final size:24
Alignment explanation
Indices: 29749346--29749394 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
29749336 ATTTGTTTTA
*
29749346 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
29749370 ATATTTGATTTATTATATTTTTAAA
1 ATATTT-ATTT-TTATATTTTTAAA
29749395 ATTTTTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 6 0.27
25 4 0.18
26 12 0.55
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:29749405 original size:25 final size:26
Alignment explanation
Indices: 29749349--29749406 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 26
29749339 TGTTTTAATA
*
29749349 TTTATTT-TTATGTTTTTAAATATAT
1 TTTATTTATTATATTTTTAAATATAT
* *
29749374 TTGATTTATTATATTTTTAAA-ATTT
1 TTTATTTATTATATTTTTAAATATAT
29749399 TTTATTTA
1 TTTATTTA
29749407 ATGAAATAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 16 0.57
26 12 0.43
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.67
Consensus pattern (26 bp):
TTTATTTATTATATTTTTAAATATAT
Found at i:29765806 original size:13 final size:13
Alignment explanation
Indices: 29765788--29765812 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
29765778 TTGAAACCGA
29765788 AATTAACTAAATC
1 AATTAACTAAATC
29765801 AATTAACTAAAT
1 AATTAACTAAAT
29765813 AACACGACAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.32
Consensus pattern (13 bp):
AATTAACTAAATC
Found at i:29767333 original size:17 final size:17
Alignment explanation
Indices: 29767310--29767351 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
29767300 AAAGTTGCAC
29767310 ATATTTTAT-TTTCTAGT
1 ATATTTTATATTT-TAGT
*
29767327 TTATTTTATATTTTAGT
1 ATATTTTATATTTTAGT
29767344 ATATTTTA
1 ATATTTTA
29767352 CATCTAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 19 0.86
18 3 0.14
ACGTcount: A:0.26, C:0.02, G:0.05, T:0.67
Consensus pattern (17 bp):
ATATTTTATATTTTAGT
Found at i:29767547 original size:48 final size:48
Alignment explanation
Indices: 29767480--29767572 Score: 168
Period size: 48 Copynumber: 1.9 Consensus size: 48
29767470 TCTTAATATC
*
29767480 TATATATAAAATATTATGTGTTACTATATGTGTAAGTTTGCCTTTATA
1 TATATATAAAATATTATGTGTTACTATATGTGCAAGTTTGCCTTTATA
*
29767528 TATATATATAATATTATGTGTTACTATATGTGCAAGTTTGCCTTT
1 TATATATAAAATATTATGTGTTACTATATGTGCAAGTTTGCCTTT
29767573 CTTTTTTTAT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.31, C:0.08, G:0.13, T:0.48
Consensus pattern (48 bp):
TATATATAAAATATTATGTGTTACTATATGTGCAAGTTTGCCTTTATA
Found at i:29767555 original size:24 final size:24
Alignment explanation
Indices: 29767479--29767556 Score: 63
Period size: 24 Copynumber: 3.2 Consensus size: 24
29767469 ATCTTAATAT
*
29767479 CTATATATAAAATATTATGTGTTA
1 CTATATATATAATATTATGTGTTA
* * *
29767503 CTATATGTGTAA-GTT-TGCCT-TTA
1 CTATATATATAATATTATG--TGTTA
*
29767526 TATATATATATAATATTATGTGTTA
1 -CTATATATATAATATTATGTGTTA
29767551 CTATAT
1 CTATAT
29767557 GTGCAAGTTT
Statistics
Matches: 39, Mismatches: 9, Indels: 12
0.65 0.15 0.20
Matches are distributed among these distances:
22 2 0.05
23 5 0.13
24 25 0.64
25 5 0.13
26 2 0.05
ACGTcount: A:0.35, C:0.06, G:0.10, T:0.49
Consensus pattern (24 bp):
CTATATATATAATATTATGTGTTA
Found at i:29768682 original size:13 final size:13
Alignment explanation
Indices: 29768664--29768688 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
29768654 GTTTCAAGTT
29768664 TTTTTAATTAATG
1 TTTTTAATTAATG
29768677 TTTTTAATTAAT
1 TTTTTAATTAAT
29768689 AAATATTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (13 bp):
TTTTTAATTAATG
Found at i:29769262 original size:44 final size:44
Alignment explanation
Indices: 29769213--29769303 Score: 130
Period size: 44 Copynumber: 2.1 Consensus size: 44
29769203 ATAAGCCAAA
* * *
29769213 TAATATTAAAATAACCTATACTAATCA-ATGTTTAAGTGAGGAAC
1 TAATATTAAAAAAACCTACACTAATCAGA-GTTTAAATGAGGAAC
*
29769257 TAATATTAAAAAAACCTACACTAATCAGAGTTTAAATGGGGAAC
1 TAATATTAAAAAAACCTACACTAATCAGAGTTTAAATGAGGAAC
29769301 TAA
1 TAA
29769304 AAATAGAGTT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
44 41 0.98
45 1 0.02
ACGTcount: A:0.47, C:0.12, G:0.12, T:0.29
Consensus pattern (44 bp):
TAATATTAAAAAAACCTACACTAATCAGAGTTTAAATGAGGAAC
Found at i:29771495 original size:13 final size:13
Alignment explanation
Indices: 29771477--29771501 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
29771467 AAAATATATT
29771477 ATTAATTAAAAAC
1 ATTAATTAAAAAC
29771490 ATTAATTAAAAA
1 ATTAATTAAAAA
29771502 AAACTTGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (13 bp):
ATTAATTAAAAAC
Found at i:29773214 original size:26 final size:26
Alignment explanation
Indices: 29773185--29773266 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
29773175 TGATACAAAT
*
29773185 TGATAATGGGTTAGGTAAATGTTCAA
1 TGATAATGGGTTAGGTAAATGTTCCA
29773211 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
29773237 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
29773263 TGAT
1 TGAT
29773267 TGGAATTTCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.32, C:0.06, G:0.27, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:29776352 original size:65 final size:63
Alignment explanation
Indices: 29776270--29776390 Score: 165
Period size: 65 Copynumber: 1.9 Consensus size: 63
29776260 GAGAATCATT
* * *
29776270 AGAAAAGTTGGTGTTATTTT-AGCA-TTTTATGTTGTTTTTAAGTATGTTTCATTTTCTGTCATA
1 AGAAAAGTTAGTGTTATTTTGA-CATTTTTATGTT-ATTTTAAGTATATTT-ATTTTCTGTCATA
29776333 A
63 A
29776334 AGAATAAGTTAGTGTTATTTTGACATTTTTATGTTATTTTAAGTATATTTATTTTCT
1 AGAA-AAGTTAGTGTTATTTTGACATTTTTATGTTATTTTAAGTATATTTATTTTCT
29776391 TGATTAAAAA
Statistics
Matches: 51, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
64 11 0.22
65 30 0.59
66 10 0.20
ACGTcount: A:0.26, C:0.05, G:0.15, T:0.54
Consensus pattern (63 bp):
AGAAAAGTTAGTGTTATTTTGACATTTTTATGTTATTTTAAGTATATTTATTTTCTGTCATAA
Done.