Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 94 of 284
Found at i:30940775 original size:40 final size:40
Alignment explanation
Indices: 30940691--30940777 Score: 95
Period size: 40 Copynumber: 2.2 Consensus size: 40
30940681 AATTCATTAC
* * * *
30940691 TTCAGTAATTTCACAGTTCAATGCAGTATACATAATAATA
1 TTCAGTAACTTCACAATTCAATGCAGTATACAAAACAATA
** *
30940731 TTCAGTAACTTCACAATTCAATTTAGTACT-CAAAACAATT
1 TTCAGTAACTTCACAATTCAATGCAGTA-TACAAAACAATA
30940771 TTCAGTA
1 TTCAGTA
30940778 TTCTATAATT
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
40 38 0.97
41 1 0.03
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (40 bp):
TTCAGTAACTTCACAATTCAATGCAGTATACAAAACAATA
Found at i:30941662 original size:16 final size:16
Alignment explanation
Indices: 30941632--30941673 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
30941622 AAATATTATG
30941632 AATTAA-TTT-TAATT
1 AATTAATTTTCTAATT
30941646 AATTAATTTTCTAATT
1 AATTAATTTTCTAATT
*
30941662 AAATAATTTTCT
1 AATTAATTTTCT
30941674 CAGCCCGATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 6 0.24
15 3 0.12
16 16 0.64
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (16 bp):
AATTAATTTTCTAATT
Found at i:30947667 original size:25 final size:26
Alignment explanation
Indices: 30947633--30947700 Score: 75
Period size: 25 Copynumber: 2.6 Consensus size: 26
30947623 ATTTGTTTAA
30947633 TAAAAATTTGTAAGT-GTTATAAATG
1 TAAAAATTTGTAAGTAGTTATAAATG
* * *
30947658 TAAATATTTGTAAGTAGTTGTAAAAG
1 TAAAAATTTGTAAGTAGTTATAAATG
* *
30947684 TTTAAAATTTGTTAGTA
1 -TAAAAATTTGTAAGTA
30947701 TAATTCTGGT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
25 14 0.40
26 8 0.23
27 13 0.37
ACGTcount: A:0.41, C:0.00, G:0.16, T:0.43
Consensus pattern (26 bp):
TAAAAATTTGTAAGTAGTTATAAATG
Found at i:30950182 original size:37 final size:38
Alignment explanation
Indices: 30950123--30950207 Score: 120
Period size: 37 Copynumber: 2.3 Consensus size: 38
30950113 CTCCATGTTT
* *
30950123 TGGCGTGTTT-TCAGTTGGACTAGCTCTTATGAGCATC
1 TGGCGTGTTTCTCAGTTGAACTAGCTCTTATAAGCATC
* *
30950160 TGGCGTGTTTCT-TGTTGAACTAGCTCTTATAAGCATT
1 TGGCGTGTTTCTCAGTTGAACTAGCTCTTATAAGCATC
30950197 TGGCGTGTTTC
1 TGGCGTGTTTC
30950208 GGGTGGAATA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
37 42 0.98
38 1 0.02
ACGTcount: A:0.15, C:0.18, G:0.26, T:0.41
Consensus pattern (38 bp):
TGGCGTGTTTCTCAGTTGAACTAGCTCTTATAAGCATC
Found at i:30952974 original size:48 final size:48
Alignment explanation
Indices: 30952901--30953126 Score: 230
Period size: 48 Copynumber: 4.8 Consensus size: 48
30952891 TAGGGTAGGG
* * * *
30952901 TGCCAATGCCATATCTCGGATATGGTCTTACATGGGATCACATATCAA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCAA
* ** * **
30952949 TTCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCGTAGATTGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCAA
*
30952997 TGCCAATGCCATGTCCCCGACATGGTCTTACATGGGATCACATATCAA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCAA
* * * ** *
30953045 TGCCGAT---A-G-CCCAG-CTATGGTCTTATACGAAATTACATATCAA
1 TGCCAATGCCATGTCCCAGAC-ATGGTCTTACATGGGATCACATATCAA
* *
30953088 TTCCAATGCCATGTCCCAGACATGGTCTTATATGGGATC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
30953127 GCACATAACC
Statistics
Matches: 141, Mismatches: 30, Indels: 14
0.76 0.16 0.08
Matches are distributed among these distances:
42 1 0.01
43 31 0.22
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 104 0.74
49 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.28
Consensus pattern (48 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCAA
Found at i:30957318 original size:26 final size:22
Alignment explanation
Indices: 30957292--30957336 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
30957282 AATTGGCACA
30957292 TACATACACAAAATGAATCAAC
1 TACATACACAAAATGAATCAAC
30957314 TACATACACAAAATGAATCAAC
1 TACATACACAAAATGAATCAAC
30957336 T
1 T
30957337 GTCTCTATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.53, C:0.22, G:0.04, T:0.20
Consensus pattern (22 bp):
TACATACACAAAATGAATCAAC
Found at i:30957981 original size:48 final size:48
Alignment explanation
Indices: 30957908--30958094 Score: 320
Period size: 48 Copynumber: 3.9 Consensus size: 48
30957898 AGGGTAAAAT
* *
30957908 GCCGATGCCATGTCCCATACATGGTCTTACACTGGCTCTCATAATGTG
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTG
*
30957956 GTCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTG
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTG
* *
30958004 GCCGATGCCATGTCCTAGAGATGGTCTTACATTGGCTCTCATAATGTG
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTG
*
30958052 ACCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATA
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATA
30958095 TCACCTAGAT
Statistics
Matches: 130, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 130 1.00
ACGTcount: A:0.21, C:0.27, G:0.22, T:0.30
Consensus pattern (48 bp):
GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTG
Found at i:30966242 original size:40 final size:39
Alignment explanation
Indices: 30966211--30966420 Score: 242
Period size: 40 Copynumber: 5.3 Consensus size: 39
30966201 GGACTAAGAT
* *
30966211 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
30966251 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
30966291 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * *
30966331 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
30966371 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
30966410 CCGAAGGCATT
1 CCGAAGGCATT
30966421 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 34 0.22
40 119 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:30966374 original size:120 final size:120
Alignment explanation
Indices: 30966158--30966420 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 120
30966148 TTGAATGCTG
* *
30966158 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
30966222 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
30966278 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * * *
30966341 TCGTGCGAGTTATTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
30966397 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
30966421 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 38 0.31
120 74 0.61
121 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:30966440 original size:79 final size:80
Alignment explanation
Indices: 30966159--30966455 Score: 230
Period size: 80 Copynumber: 3.7 Consensus size: 80
30966149 TGAATGCTGT
* ** * * * **
30966159 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
30966222 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* * * * **
30966239 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
30966303 GTGCGAGTTATTAAAT
65 GTGCGAGTTACTAAAA
* ** * * *
30966319 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
30966383 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
30966398 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
30966456 TACGTGATTT
Statistics
Matches: 183, Mismatches: 28, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
78 15 0.08
79 47 0.26
80 110 0.60
81 11 0.06
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:30974193 original size:40 final size:39
Alignment explanation
Indices: 30974162--30974371 Score: 242
Period size: 40 Copynumber: 5.3 Consensus size: 39
30974152 GGACTAAGAT
* *
30974162 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
30974202 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
30974242 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * *
30974282 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
30974322 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
30974361 CCGAAGGCATT
1 CCGAAGGCATT
30974372 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 34 0.22
40 119 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:30974325 original size:120 final size:120
Alignment explanation
Indices: 30974109--30974371 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 120
30974099 TTGAATGCTG
* *
30974109 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
30974173 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
30974229 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * * *
30974292 TCGTGCGAGTTATTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
30974348 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
30974372 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 38 0.31
120 74 0.61
121 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:30974391 original size:79 final size:80
Alignment explanation
Indices: 30974110--30974406 Score: 230
Period size: 80 Copynumber: 3.7 Consensus size: 80
30974100 TGAATGCTGT
* ** * * * **
30974110 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
30974173 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* * * * **
30974190 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
30974254 GTGCGAGTTATTAAAT
65 GTGCGAGTTACTAAAA
* ** * * *
30974270 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
30974334 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
30974349 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
30974407 TACGTGATTT
Statistics
Matches: 183, Mismatches: 28, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
78 15 0.08
79 47 0.26
80 110 0.60
81 11 0.06
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:30977859 original size:25 final size:26
Alignment explanation
Indices: 30977804--30977859 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
30977794 AATACAAATC
* * *
30977804 ACTAATTAACATGTATATGTTCAATA
1 ACTAATTAAAATATATATGATCAATA
*
30977830 A-TAATTAAAATATATAT-ATCATTA
1 ACTAATTAAAATATATATGATCAATA
30977854 ACTAAT
1 ACTAAT
30977860 CATTCATACA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
24 6 0.24
25 18 0.72
26 1 0.04
ACGTcount: A:0.48, C:0.09, G:0.04, T:0.39
Consensus pattern (26 bp):
ACTAATTAAAATATATATGATCAATA
Found at i:30984250 original size:13 final size:12
Alignment explanation
Indices: 30984218--30984255 Score: 60
Period size: 11 Copynumber: 3.2 Consensus size: 12
30984208 CCTTTCCCCC
30984218 TCCCTTCTCTC-
1 TCCCTTCTCTCT
30984229 TCCCTTCTCTCT
1 TCCCTTCTCTCT
30984241 TCCCTCTCTCTCT
1 TCCCT-TCTCTCT
30984254 TC
1 TC
30984256 TTTTTTTTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 11 0.44
12 5 0.20
13 9 0.36
ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47
Consensus pattern (12 bp):
TCCCTTCTCTCT
Found at i:30984801 original size:23 final size:23
Alignment explanation
Indices: 30984757--30984802 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
30984747 GTATCACTAT
*
30984757 TATTATTATTATGTATTAGTATA
1 TATTATTATTATGTAGTAGTATA
*
30984780 TATTTTTATTATGTACGT-GTATA
1 TATTATTATTATGTA-GTAGTATA
30984803 CATATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 19 0.95
24 1 0.05
ACGTcount: A:0.30, C:0.02, G:0.11, T:0.57
Consensus pattern (23 bp):
TATTATTATTATGTAGTAGTATA
Found at i:30987359 original size:19 final size:20
Alignment explanation
Indices: 30987319--30987362 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
30987309 GTCTCTTTAG
* *
30987319 GCATT-CATTTCATGCATTT
1 GCATTACATTGCATGCATAT
30987338 GCATTACATTGCAT-CATAT
1 GCATTACATTGCATGCATAT
30987357 GCATTA
1 GCATTA
30987363 GATTTTCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.41
Consensus pattern (20 bp):
GCATTACATTGCATGCATAT
Found at i:30991584 original size:86 final size:86
Alignment explanation
Indices: 30991455--30991718 Score: 402
Period size: 86 Copynumber: 3.1 Consensus size: 86
30991445 AGTAAAAATT
* * * * *
30991455 GAAGATAAACCTTGCCTCTCTCGGTCGTAGCAGAGCTGGTTGAAGTTATCAGATCTTGCCTTCCT
1 GAAGACAAACCTTGCCTCTCTCGTTTGTAGTAGAGCTGGTTGAAGATATCAGATCTTGCCTTCCT
*
30991520 GCATTGACAGTGAAGCAGATC
66 GCATTGACAGCGAAGCAGATC
* * *
30991541 GAAGACAAACCTTACCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAACAGATCTTGCCTTCCT
1 GAAGACAAACCTTGCCTCTCTCGTTTGTAGTAGAGCTGGTTGAAGATATCAGATCTTGCCTTCCT
*
30991606 GCACTGACAGCGAAGCAGATC
66 GCATTGACAGCGAAGCAGATC
*
30991627 GAAGACAAACCTTGCCTCTCTCGTTTGTAGTAGAGCTGGTTGAAGATATCAGATCTTGCTTTCCT
1 GAAGACAAACCTTGCCTCTCTCGTTTGTAGTAGAGCTGGTTGAAGATATCAGATCTTGCCTTCCT
* *
30991692 GTATTTGGCAGCGAAGCAGATC
66 GCA-TTGACAGCGAAGCAGATC
30991714 GAAGA
1 GAAGA
30991719 TGGCAGATTT
Statistics
Matches: 160, Mismatches: 17, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
86 139 0.87
87 21 0.13
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (86 bp):
GAAGACAAACCTTGCCTCTCTCGTTTGTAGTAGAGCTGGTTGAAGATATCAGATCTTGCCTTCCT
GCATTGACAGCGAAGCAGATC
Found at i:30991845 original size:45 final size:44
Alignment explanation
Indices: 30991796--30991931 Score: 113
Period size: 45 Copynumber: 3.1 Consensus size: 44
30991786 GGCAGTGGAA
30991796 TAGATTGAAGATTGCAGATCTTGCCTTCCTGCGTTAACAGCGAAG
1 TAGATTGAAGA-TGCAGATCTTGCCTTCCTGCGTTAACAGCGAAG
* * * * *
30991841 TAGATCGAA-A-ACA-ATCTTTGCCTTCATTG-GTT-ACAGTGGAG
1 TAGATTGAAGATGCAGATC-TTGCCTTC-CTGCGTTAACAGCGAAG
* *
30991882 CT-GGTTGAAGATAGCAGATCTTGCCTTCCTACGTTAACAGCGAAG
1 -TAGATTGAAGAT-GCAGATCTTGCCTTCCTGCGTTAACAGCGAAG
*
30991927 CAGAT
1 TAGAT
30991932 CGAAAACAAA
Statistics
Matches: 67, Mismatches: 14, Indels: 20
0.66 0.14 0.20
Matches are distributed among these distances:
41 15 0.22
42 15 0.22
43 3 0.04
44 14 0.21
45 20 0.30
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.29
Consensus pattern (44 bp):
TAGATTGAAGATGCAGATCTTGCCTTCCTGCGTTAACAGCGAAG
Found at i:30992039 original size:44 final size:44
Alignment explanation
Indices: 30991986--30993301 Score: 578
Period size: 44 Copynumber: 29.6 Consensus size: 44
30991976 AAGACAAGAG
* * *
30991986 ATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCTAGTA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAGCTAGTA
* * * * ** *
30992030 ATCCTATCTCTCTGA-AGTTACAGTGGAGCGGAT-TAAAATAAAG-G
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCGAAGCT--AGTA
* ** * * *
30992074 ATCTTATCTCTCTGA-AGTTACAGCAGAGTAGATCGTATC-AG--
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCGAAGCTAGTA
* * * * * * * *
30992115 GTCTTATCACCCTGAGGTTATAGTGGAGTAGACCGAAG-AATTTCA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAGCTA-GT-A
* *
30992160 GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCATAGTA
1 -ATCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAG-C-TAGTA
* *
30992207 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGAC-ACT-
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAG-CTAGTA
* * **
30992250 ATCCTATCTCCCTGA-AGTTACAGTGGAGCGGATC-AAAATGAG-A
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCGAAGCT-AGTA
* * ** *
30992293 GATCTTATCTCCCTGAGATTACAGTGGAACAGACCGAA-AAATTTCA
1 -ATCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAGCTA-GT-A
* * ** *
30992339 GATCTTATCTCCCTGAGATTACAGTGGAACAGACCGAA-AAATTTCA
1 -ATCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAGCTA-GT-A
* *
30992385 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGAC-ACT-
1 -ATCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAG-CTAGTA
* * **
30992429 ATCCTATCTCCCTGA-AGTTACAGTGGAGCGGATC-AAAATGAG-A
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCGAAGCT-AGTA
* *
30992472 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGAC-ACT-
1 -ATCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAG-CTAGTA
* * **
30992516 ATCCTATCTCCCTGA-AGTTACAGTGGAGCGGATC-AAAATGAG-A
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCGAAGCT-AGTA
* *
30992559 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGAC-ACT-
1 -ATCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAG-CTAGTA
* * **
30992603 ATCCTATCTCCCTGA-AGTTACAGTGGAGCGGATC-AAAATGAG-A
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCGAAGCT-AGTA
* *
30992646 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGAC-ACT-
1 -ATCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAG-CTAGTA
* * **
30992690 ATCCTATCTCCCTGA-AGTTACAGTGGAGCGGATC-AAAATGAG-A
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCGAAGCT-AGTA
* *
30992733 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGAC-ACT-
1 -ATCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAG-CTAGTA
* * **
30992777 ATCCTATCTCCCTGA-AGTTACAGTGGAGCGGATC-AAAATGAG-A
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCGAAGCT-AGTA
* * *
30992820 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTA
1 -ATCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAGCTAGTA
* * * ** *
30992865 ATCCTATCTCCCTGAGATTACAGTGGAGCGGAT-TAAAATAAAG-G
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAGCT--AGTA
* ** * * *
30992909 ATCTTATCTCTCTGA-AGTTACAGCAGAGTAGATCGTATC-AG--
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCGAAGCTAGTA
* * * * * * * *
30992950 GTCTTATCACCCTGAGGTTATAGTGGAGTAGACCGAAG-AATTTCA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAGCTA-GT-A
* *
30992995 GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCATAGTA
1 -ATCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAG-C-TAGTA
* * *
30993042 ATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCTAGTA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAGCTAGTA
* * * * ** *
30993086 ATCCTATCTCTCTGA-AGTTACAGTGGAGCGGAT-TAAAATAAAG-G
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCGAAGCT--AGTA
* * * *
30993130 ATCTTATCTCTCT-AAAGTTACAGTAGAGTAGATCACATCAGATTGAAGCCAG-A
1 ATCTTATCTCCCTGAGA-TTACAGT-G-G-AG-------CAGATCGAAGCTAGTA
* * ** *
30993183 GATCTTATCTCCCTGAGATTACAGTGGAACAGACCGAA-AAATTTCA
1 -ATCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAGCTA-GT-A
* * * *
30993229 GATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGATAGTA
1 -ATCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAGCTAGTA
* *
30993274 ATCCTATCTGCCTGAGATTACAGTGGAG
1 ATCTTATCTCCCTGAGATTACAGTGGAG
30993302 TGGATTAAAA
Statistics
Matches: 978, Mismatches: 189, Indels: 210
0.71 0.14 0.15
Matches are distributed among these distances:
41 56 0.06
42 22 0.02
43 196 0.20
44 375 0.38
45 32 0.03
46 254 0.26
47 7 0.01
48 2 0.00
49 2 0.00
51 1 0.00
52 1 0.00
53 3 0.00
54 23 0.02
55 4 0.00
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (44 bp):
ATCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAGCTAGTA
Found at i:30992490 original size:87 final size:87
Alignment explanation
Indices: 30992207--30992943 Score: 1160
Period size: 87 Copynumber: 8.4 Consensus size: 87
30992197 AGCCATAGTA
30992207 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACA
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACA
30992272 GTGGAGCGGATCAAAATGAGAG
66 GTGGAGCGGATCAAAATGAGAG
* * * * * *
30992294 ATCTTATCTCCCTGAGATTACAGTGGAACAGACCGAA-AAATTTCAGATCTTATCTCCCTG-AGA
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACA---C-TATCCTATCTCCCTGAAG-
* * * ***
30992357 TTACAGTGGAACAGACCGAAAAATTTCAG
61 TTACAGTGGAGCGGATC--AAAATGAGAG
30992386 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACA
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACA
30992451 GTGGAGCGGATCAAAATGAGAG
66 GTGGAGCGGATCAAAATGAGAG
30992473 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACA
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACA
30992538 GTGGAGCGGATCAAAATGAGAG
66 GTGGAGCGGATCAAAATGAGAG
30992560 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACA
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACA
30992625 GTGGAGCGGATCAAAATGAGAG
66 GTGGAGCGGATCAAAATGAGAG
30992647 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACA
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACA
30992712 GTGGAGCGGATCAAAATGAGAG
66 GTGGAGCGGATCAAAATGAGAG
30992734 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACA
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACA
30992799 GTGGAGCGGATCAAAATGAGAG
66 GTGGAGCGGATCAAAATGAGAG
* * *
30992821 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCCTG-AGATTA
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACT-ATCCTATCTCCCTGAAG-TTA
* *
30992885 CAGTGGAGCGGATTAAAAT-AAAGG
64 CAGTGGAGCGGATCAAAATGAGA-G
* * *
30992909 ATCTTATCTCTCTGA-AGTTACAGCAGAGTAGATCG
1 ATCTTATCTCCCTGAGA-TTACAGCGGAGCAGATCG
30992944 TATCAGGTCT
Statistics
Matches: 604, Mismatches: 33, Indels: 25
0.91 0.05 0.04
Matches are distributed among these distances:
86 2 0.00
87 434 0.72
88 65 0.11
89 30 0.05
90 30 0.05
92 41 0.07
93 2 0.00
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (87 bp):
ATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACA
GTGGAGCGGATCAAAATGAGAG
Found at i:30992667 original size:174 final size:174
Alignment explanation
Indices: 30992207--30993069 Score: 1164
Period size: 174 Copynumber: 4.9 Consensus size: 174
30992197 AGCCATAGTA
30992207 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACA
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACA
* * * *
30992272 GTGGAGCGGATCAAAATGAGAGATCTTATCTCCCTGAGATTACAGTGGAACAGACCGAA-AAATT
66 GTGGAGCGGATCAAAATGAGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACA--
* * * * * ***
30992336 TCAGATCTTATCTCCCTGAGATTACAGTGGAACAGACCGAAAAATTTCAG
129 -C-TATCCTATCTCCCTGAGATTACAGTGGAGCGGATC--AAAATGAGAG
30992386 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACA
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACA
30992451 GTGGAGCGGATCAAAATGAGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACT
66 GTGGAGCGGATCAAAATGAGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACT
30992516 ATCCTATCTCCCTGA-AGTTACAGTGGAGCGGATCAAAATGAGAG
131 ATCCTATCTCCCTGAGA-TTACAGTGGAGCGGATCAAAATGAGAG
30992560 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACA
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACA
30992625 GTGGAGCGGATCAAAATGAGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACT
66 GTGGAGCGGATCAAAATGAGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACT
30992690 ATCCTATCTCCCTGA-AGTTACAGTGGAGCGGATCAAAATGAGAG
131 ATCCTATCTCCCTGAGA-TTACAGTGGAGCGGATCAAAATGAGAG
30992734 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACA
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACA
* * *
30992799 GTGGAGCGGATCAAAATGAGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGT
66 GTGGAGCGGATCAAAATGAGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACT
* *
30992864 AATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAAT-AAAGG
131 -ATCCTATCTCCCTGAGATTACAGTGGAGCGGATCAAAATGAGA-G
* * * * * ** * * * *
30992909 ATCTTATCTCTCTGA-AGTTACAGCAGAGTAGATCGTA-TCA-GGTCTTATCACCCTGAGGTTAT
1 ATCTTATCTCCCTGAGA-TTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTAC
** * *** * * *
30992971 AGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCC
65 AGTGGAGCGGATC-AA-AATGAGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAG--
* * * *
30993036 ATAGTAATCTTATCTCCCTGAGATTACAGCGGAG
126 ACACT-ATCCTATCTCCCTGAGATTACAGTGGAG
30993070 TAGATTGAAG
Statistics
Matches: 634, Mismatches: 40, Indels: 22
0.91 0.06 0.03
Matches are distributed among these distances:
173 26 0.04
174 315 0.50
175 108 0.17
176 29 0.05
177 33 0.05
179 121 0.19
180 2 0.00
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (174 bp):
ATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACA
GTGGAGCGGATCAAAATGAGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACT
ATCCTATCTCCCTGAGATTACAGTGGAGCGGATCAAAATGAGAG
Found at i:30993311 original size:188 final size:187
Alignment explanation
Indices: 30992993--30993383 Score: 565
Period size: 188 Copynumber: 2.1 Consensus size: 187
30992983 CGAAGAATTT
* * ** **
30992993 CAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCATAGTAATCTTATCTCCCTGAG
1 CAGATCTTATCTCCCTGAGATTACAGTGGAACAGACCGAAGAAATAGTAATCTTATCTCCCTGAG
*
30993058 ATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAA
66 ATTACAGCGGAGTAGATTGAAGATAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAA
* ** *
30993123 ATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCACATCAGATTGAAGCCA
131 ATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCACAGCAGA-CAAAACCA
* *
30993181 GAGATCTTATCTCCCTGAGATTACAGTGGAACAGACCGAA-AAAT-TTCAGATCTTATCTCCCTG
1 CAGATCTTATCTCCCTGAGATTACAGTGGAACAGACCGAAGAAATAGT-A-ATCTTATCTCCCTG
*
30993244 AGATTACAGCGGAGTAGATTGAAGATAGTAATCCTATCTGC-CTG-AGATTACAGTGGAGTGGAT
64 AGATTACAGCGGAGTAGATTGAAGATAGTAATCCTATCT-CTCTGAAG-TTACAGTGGAGCGGAT
* *
30993307 TAAAATAAATGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACAGCAGACAAAACCA
127 TAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCACAGCAGACAAAACCA
30993368 CAGATCTTATCTCCCT
1 CAGATCTTATCTCCCT
30993384 AAGCAGTTAG
Statistics
Matches: 182, Mismatches: 17, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
186 1 0.01
187 25 0.14
188 155 0.85
189 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (187 bp):
CAGATCTTATCTCCCTGAGATTACAGTGGAACAGACCGAAGAAATAGTAATCTTATCTCCCTGAG
ATTACAGCGGAGTAGATTGAAGATAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAA
ATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCACAGCAGACAAAACCA
Found at i:30993326 original size:44 final size:44
Alignment explanation
Indices: 30993183--30993350 Score: 126
Period size: 44 Copynumber: 3.8 Consensus size: 44
30993173 TGAAGCCAGA
* ** ** *
30993183 GATCTTATCTCCCTGAGATTACAGTGGAACAGACCGAAAA-ATTT
1 GATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAAATA-AT
* *
30993227 CAGATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGATAGT
1 --GATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAAATAAT
* * * * *
30993273 AATCCTATCTGCCTGAGATTACAGTGGAGTGGATT-AAAATAAAT
1 GATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAAAT-AAT
* **
30993317 GATCTTATCTCTCTGA-AGTTACAGTAGAGTAGAT
1 GATCTTATCTCCCTGAGA-TTACAGCGGAGTAGAT
30993351 CACAGCAGAC
Statistics
Matches: 99, Mismatches: 20, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
43 5 0.05
44 58 0.59
46 35 0.35
47 1 0.01
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.30
Consensus pattern (44 bp):
GATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAAATAAT
Found at i:30993599 original size:40 final size:40
Alignment explanation
Indices: 30993539--30993792 Score: 447
Period size: 40 Copynumber: 6.3 Consensus size: 40
30993529 GAAGCAACAN
30993539 TAGCCCGGATATATTC-ACTCGCATAATTGCCTTCGGGTCT
1 TAGCCCGGATATA-TCAACTCGCATAATTGCCTTCGGGTCT
*
30993579 TAGCCCGGATATATTAACTCGCATAATTGCCTTCGGGTCT
1 TAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCT
30993619 TAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCT
1 TAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCT
*
30993659 TAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCC
1 TAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCT
*
30993699 TAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCC
1 TAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCT
*
30993739 TAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCA
1 TAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCT
*
30993779 TAACCCGGATATAT
1 TAGCCCGGATATAT
30993793 TCCAATGTTC
Statistics
Matches: 208, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
39 1 0.00
40 207 1.00
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.30
Consensus pattern (40 bp):
TAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCT
Found at i:30998115 original size:58 final size:58
Alignment explanation
Indices: 30998025--30998139 Score: 194
Period size: 58 Copynumber: 2.0 Consensus size: 58
30998015 TTTCTGACAC
* * *
30998025 TTCTCCGTCCATTCGAACTTAACGTCCTTTTGAAGTAGCTTCATCATTGGTGTGGCTT
1 TTCTCCGTCCACTCGAACCTAACATCCTTTTGAAGTAGCTTCATCATTGGTGTGGCTT
*
30998083 TTCTCCGTCCACTCGAACCTAACATCCTTTTGAAGTAGCTTCGTCATTGGTGTGGCT
1 TTCTCCGTCCACTCGAACCTAACATCCTTTTGAAGTAGCTTCATCATTGGTGTGGCT
30998140 ATCATCGAGA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
58 53 1.00
ACGTcount: A:0.17, C:0.26, G:0.19, T:0.37
Consensus pattern (58 bp):
TTCTCCGTCCACTCGAACCTAACATCCTTTTGAAGTAGCTTCATCATTGGTGTGGCTT
Found at i:31002337 original size:40 final size:40
Alignment explanation
Indices: 31002289--31002458 Score: 295
Period size: 40 Copynumber: 4.2 Consensus size: 40
31002279 GCAAACACAT
* *
31002289 TTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
31002329 TTGCCTTCGGGTCTTAGCCCGGATATATCATCCCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
31002369 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
31002409 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
31002449 TTGCCTTCGG
1 TTGCCTTCGG
31002459 ATCAATAATC
Statistics
Matches: 122, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 122 1.00
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:31002724 original size:161 final size:161
Alignment explanation
Indices: 31002459--31002758 Score: 600
Period size: 161 Copynumber: 1.9 Consensus size: 161
31002449 TTGCCTTCGG
31002459 ATCAATAATCATAACACATCCATATCATTTCTTCGTTACTAAGGCTCAAACACAAAACATTTATT
1 ATCAATAATCATAACACATCCATATCATTTCTTCGTTACTAAGGCTCAAACACAAAACATTTATT
31002524 AAACCTTTCAAATTTCGGCTCAGTAGCCACACACAAAGAGCATGATTTCAATTGGCTTTATAAGA
66 AAACCTTTCAAATTTCGGCTCAGTAGCCACACACAAAGAGCATGATTTCAATTGGCTTTATAAGA
31002589 TAGTCTCTATCCAATGTTCACGCACACATAT
131 TAGTCTCTATCCAATGTTCACGCACACATAT
31002620 ATCAATAATCATAACACATCCATATCATTTCTTCGTTACTAAGGCTCAAACACAAAACATTTATT
1 ATCAATAATCATAACACATCCATATCATTTCTTCGTTACTAAGGCTCAAACACAAAACATTTATT
31002685 AAACCTTTCAAATTTCGGCTCAGTAGCCACACACAAAGAGCATGATTTCAATTGGCTTTATAAGA
66 AAACCTTTCAAATTTCGGCTCAGTAGCCACACACAAAGAGCATGATTTCAATTGGCTTTATAAGA
31002750 TAGTCTCTA
131 TAGTCTCTA
31002759 AGCACATTCG
Statistics
Matches: 139, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
161 139 1.00
ACGTcount: A:0.36, C:0.23, G:0.10, T:0.31
Consensus pattern (161 bp):
ATCAATAATCATAACACATCCATATCATTTCTTCGTTACTAAGGCTCAAACACAAAACATTTATT
AAACCTTTCAAATTTCGGCTCAGTAGCCACACACAAAGAGCATGATTTCAATTGGCTTTATAAGA
TAGTCTCTATCCAATGTTCACGCACACATAT
Found at i:31018933 original size:13 final size:13
Alignment explanation
Indices: 31018912--31018941 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
31018902 TGTGCAATTC
31018912 AGAAAGGATGAAT
1 AGAAAGGATGAAT
*
31018925 AGAATGGATGAAT
1 AGAAAGGATGAAT
31018938 AGAA
1 AGAA
31018942 CAATCACGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.30, T:0.17
Consensus pattern (13 bp):
AGAAAGGATGAAT
Found at i:31020591 original size:13 final size:13
Alignment explanation
Indices: 31020573--31020597 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
31020563 TAGTTGATAC
31020573 ATAAAGAACACTA
1 ATAAAGAACACTA
31020586 ATAAAGAACACT
1 ATAAAGAACACT
31020598 GGAAAGTAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (13 bp):
ATAAAGAACACTA
Found at i:31022063 original size:6 final size:6
Alignment explanation
Indices: 31022052--31022080 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
31022042 TCGTGTCATC
31022052 GAAAGG GAAAGG GAAAGG GAAAGG GAAAG
1 GAAAGG GAAAGG GAAAGG GAAAGG GAAAG
31022081 TAATCACCGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (6 bp):
GAAAGG
Found at i:31040099 original size:16 final size:17
Alignment explanation
Indices: 31040075--31040114 Score: 73
Period size: 16 Copynumber: 2.4 Consensus size: 17
31040065 AAAACTAAAT
31040075 AACTAAAATAAACAAAC
1 AACTAAAATAAACAAAC
31040092 AA-TAAAATAAACAAAC
1 AACTAAAATAAACAAAC
31040108 AACTAAA
1 AACTAAA
31040115 CGAATTAAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 16 0.73
17 6 0.27
ACGTcount: A:0.72, C:0.15, G:0.00, T:0.12
Consensus pattern (17 bp):
AACTAAAATAAACAAAC
Found at i:31043105 original size:21 final size:21
Alignment explanation
Indices: 31043059--31043107 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
31043049 GGGTCGAGCT
* * *
31043059 CGAGCTTGAACATTCAATGTC
1 CGAGCTCGAACATTCAAGGCC
*
31043080 TGAGCTCGAACATTCAAGGCC
1 CGAGCTCGAACATTCAAGGCC
31043101 CGAGCTC
1 CGAGCTC
31043108 ATTTTTTAAG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (21 bp):
CGAGCTCGAACATTCAAGGCC
Found at i:31043305 original size:22 final size:23
Alignment explanation
Indices: 31043264--31043307 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
31043254 TATGATGACT
31043264 ATATATAAAATTTTAATAAATAAA
1 ATATATAAAA-TTTAATAAATAAA
*
31043288 ATATATAAAA-TTATTAAATA
1 ATATATAAAATTTAATAAATA
31043308 TTAAATTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
24 10 0.53
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (23 bp):
ATATATAAAATTTAATAAATAAA
Found at i:31044693 original size:30 final size:30
Alignment explanation
Indices: 31044652--31044711 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
31044642 GGGGGTGGGA
*
31044652 TGGGAAGGGAGTAAAAGTTTTGGGGGGAAAG
1 TGGGAAGGGAGTAAAAGTATT-GGGGGAAAG
31044683 TGGG-AGGGAGTAAAAGTATTGGGGGAAAG
1 TGGGAAGGGAGTAAAAGTATTGGGGGAAAG
31044712 CAAAAAGGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 9 0.32
30 15 0.54
31 4 0.14
ACGTcount: A:0.33, C:0.00, G:0.48, T:0.18
Consensus pattern (30 bp):
TGGGAAGGGAGTAAAAGTATTGGGGGAAAG
Found at i:31044783 original size:18 final size:18
Alignment explanation
Indices: 31044760--31044797 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
31044750 TTATAGTTTG
*
31044760 TTATTCAATTTATTCGAA
1 TTATTCAAGTTATTCGAA
*
31044778 TTATTCGAGTTATTCGAA
1 TTATTCAAGTTATTCGAA
31044796 TT
1 TT
31044798 CAAAAATTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.29, C:0.11, G:0.11, T:0.50
Consensus pattern (18 bp):
TTATTCAAGTTATTCGAA
Found at i:31048533 original size:43 final size:43
Alignment explanation
Indices: 31048445--31048538 Score: 111
Period size: 43 Copynumber: 2.2 Consensus size: 43
31048435 TATGATTATG
* ***
31048445 TGTAAGACCATGTCTAGGACATTGGCATCATTATTCGATTTCA
1 TGTAAGACCATGTCTAGGACAGTGGCATCATTATTCGACGACA
*
31048488 TGTAAGACCCTGTCTAGGACAGTGGCATCGA-TATGT-GACGACA
1 TGTAAGACCATGTCTAGGACAGTGGCATC-ATTAT-TCGACGACA
31048531 TGTAAGAC
1 TGTAAGAC
31048539 TATATCTGTG
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
43 42 0.95
44 2 0.05
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (43 bp):
TGTAAGACCATGTCTAGGACAGTGGCATCATTATTCGACGACA
Found at i:31055448 original size:47 final size:47
Alignment explanation
Indices: 31055390--31055510 Score: 215
Period size: 47 Copynumber: 2.6 Consensus size: 47
31055380 CATTGGCACT
31055390 AAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGAATTTGGA
1 AAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGAATTTGGA
*
31055437 AAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGAATTTGGT
1 AAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGAATTTGGA
* *
31055484 AAGATAAGGATATCATGTAAGACCATG
1 AAGACAAGGATACCATGTAAGACCATG
31055511 CCAAGGCATG
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.39, C:0.12, G:0.25, T:0.24
Consensus pattern (47 bp):
AAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGAATTTGGA
Found at i:31055553 original size:54 final size:54
Alignment explanation
Indices: 31055489--31055697 Score: 251
Period size: 54 Copynumber: 3.9 Consensus size: 54
31055479 TTGGTAAGAT
*
31055489 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * *
31055543 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGGC
** * * * *
31055598 AAAGG-TCCCCATGTAAGACCATGCCAAGGCATGACATTGGTGAGTTC-ATAAGGC
1 -AAGGAT-ATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * *
31055652 AAGGATATCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTC
1 AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTC
31055698 AAAAAGGAAA
Statistics
Matches: 132, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
53 36 0.27
54 49 0.37
55 10 0.08
56 37 0.28
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.22
Consensus pattern (54 bp):
AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
Found at i:31059007 original size:43 final size:44
Alignment explanation
Indices: 31058959--31059107 Score: 128
Period size: 43 Copynumber: 3.5 Consensus size: 44
31058949 GTTACTGAGA
31058959 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCAT-TGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCTGTAT
** * * *
31059002 TGTGATTATGTGTAAGACCATGCCTGGTACATT-ACATCAT-TAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATC-TGTAT
* * * * * * *
31059045 T-CGATTTCGTGTAAGACCCTGTCTAGGACAGTGGCATCGGTA-
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCTGTAT
* *
31059087 TATGATGACATGTAAGACCAT
1 TGTGATTACATGTAAGACCAT
31059108 ATATGGGATA
Statistics
Matches: 81, Mismatches: 20, Indels: 10
0.73 0.18 0.09
Matches are distributed among these distances:
42 27 0.33
43 53 0.65
44 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (44 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCTGTAT
Found at i:31065945 original size:31 final size:31
Alignment explanation
Indices: 31065907--31065973 Score: 125
Period size: 31 Copynumber: 2.2 Consensus size: 31
31065897 CCAAATACTT
31065907 AGGAGAGCACCAAGAGTCAAAAGGAGCCAAA
1 AGGAGAGCACCAAGAGTCAAAAGGAGCCAAA
*
31065938 AGGAGAGCACCAAGAGTCAAAAGGAGTCAAA
1 AGGAGAGCACCAAGAGTCAAAAGGAGCCAAA
31065969 AGGAG
1 AGGAG
31065974 CAATGTCCAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.48, C:0.16, G:0.31, T:0.04
Consensus pattern (31 bp):
AGGAGAGCACCAAGAGTCAAAAGGAGCCAAA
Found at i:31067148 original size:13 final size:13
Alignment explanation
Indices: 31067130--31067158 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
31067120 TTTAGTTTAA
31067130 TTAGTTAATTAGT
1 TTAGTTAATTAGT
31067143 TTAGTTAATTAGT
1 TTAGTTAATTAGT
31067156 TTA
1 TTA
31067159 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:31068886 original size:67 final size:65
Alignment explanation
Indices: 31068745--31068898 Score: 184
Period size: 67 Copynumber: 2.3 Consensus size: 65
31068735 CATCATGTGT
* * * *
31068745 ACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTACG-G-GA-TATGATGTAGCTAGGTCGCATGCGTGATACTATGAGGACACCATG
31068810 TAG
63 TAG
* *
31068813 ACAAGAGAGCTACGGGATAT-ATGTAGCTAGGTCGCATGCGTGGTTCTAGGTGAAGGACACCATG
1 ACAAGAGAGCTACGGGATATGATGTAGCTAGGTCGCATGCGTGATACTA--TG-AGGACACCATG
31068877 TAG
63 TAG
*
31068880 ACAAGAGAGCTACGAGATA
1 ACAAGAGAGCTACGGGATA
31068899 AACTGGCTAG
Statistics
Matches: 76, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
64 25 0.33
65 3 0.04
66 3 0.04
67 31 0.41
68 14 0.18
ACGTcount: A:0.32, C:0.16, G:0.30, T:0.22
Consensus pattern (65 bp):
ACAAGAGAGCTACGGGATATGATGTAGCTAGGTCGCATGCGTGATACTATGAGGACACCATGTAG
Found at i:31080134 original size:15 final size:15
Alignment explanation
Indices: 31080114--31080152 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
31080104 GAGCCCTCAA
*
31080114 AATTGGCCTTTTCCG
1 AATTGGACTTTTCCG
*
31080129 AATTGGACTTTTTCG
1 AATTGGACTTTTCCG
31080144 AATTGGACT
1 AATTGGACT
31080153 AAACTTGGGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.21, C:0.18, G:0.21, T:0.41
Consensus pattern (15 bp):
AATTGGACTTTTCCG
Found at i:31082243 original size:20 final size:20
Alignment explanation
Indices: 31082220--31082262 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
31082210 CCCACGTCCA
31082220 TGTATGCAGGCGCACGCCCG
1 TGTATGCAGGCGCACGCCCG
*
31082240 TGTATGTAGGCGCACGCCCG
1 TGTATGCAGGCGCACGCCCG
31082260 TGT
1 TGT
31082263 TAAATTGGCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.14, C:0.30, G:0.35, T:0.21
Consensus pattern (20 bp):
TGTATGCAGGCGCACGCCCG
Found at i:31089113 original size:7 final size:6
Alignment explanation
Indices: 31089099--31089162 Score: 57
Period size: 6 Copynumber: 11.5 Consensus size: 6
31089089 AAGAAATTTG
* * *
31089099 AAATAA AAATCA AAAGAA AAATAA GAAT-A AAAT-- AAATAA AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
*
31089144 GAAT-- AAATAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAA
31089163 ATAGGAGGAT
Statistics
Matches: 46, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
4 7 0.15
5 4 0.09
6 35 0.76
ACGTcount: A:0.78, C:0.02, G:0.05, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:31089141 original size:21 final size:22
Alignment explanation
Indices: 31089105--31089162 Score: 82
Period size: 21 Copynumber: 2.7 Consensus size: 22
31089095 TTTGAAATAA
* *
31089105 AAATCAAAAGAAAAATAAGAAT
1 AAATAAAAATAAAAATAAGAAT
*
31089127 AAA-ATAAATAAAAATAAGAAT
1 AAATAAAAATAAAAATAAGAAT
31089148 AAATAAAAATAAAAA
1 AAATAAAAATAAAAA
31089163 ATAGGAGGAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
21 18 0.58
22 13 0.42
ACGTcount: A:0.78, C:0.02, G:0.05, T:0.16
Consensus pattern (22 bp):
AAATAAAAATAAAAATAAGAAT
Found at i:31089150 original size:16 final size:16
Alignment explanation
Indices: 31089112--31089159 Score: 73
Period size: 16 Copynumber: 3.1 Consensus size: 16
31089102 TAAAAATCAA
*
31089112 AAGAA-AAATAAGAAT
1 AAGAATAAATAAAAAT
31089127 AA-AATAAATAAAAAT
1 AAGAATAAATAAAAAT
31089142 AAGAATAAATAAAAAT
1 AAGAATAAATAAAAAT
31089158 AA
1 AA
31089160 AAAATAGGAG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
14 2 0.07
15 13 0.43
16 15 0.50
ACGTcount: A:0.77, C:0.00, G:0.06, T:0.17
Consensus pattern (16 bp):
AAGAATAAATAAAAAT
Found at i:31100823 original size:15 final size:14
Alignment explanation
Indices: 31100805--31100849 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
31100795 GTATGATAAA
31100805 TAATTGACTTGTTCT
1 TAATT-ACTTGTTCT
31100820 TAATTA-TGTGTTCT
1 TAATTACT-TGTTCT
31100834 TAATT-CTTGTT-T
1 TAATTACTTGTTCT
31100846 TAAT
1 TAAT
31100850 ATTCTAGGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
12 5 0.18
13 5 0.18
14 13 0.46
15 5 0.18
ACGTcount: A:0.22, C:0.09, G:0.11, T:0.58
Consensus pattern (14 bp):
TAATTACTTGTTCT
Found at i:31114183 original size:46 final size:46
Alignment explanation
Indices: 31114133--31114305 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
31114123 TGGTTGAGCA
31114133 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
31114179 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
31114224 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
31114272 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
31114306 GGGGCGGGTT
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:31114289 original size:93 final size:93
Alignment explanation
Indices: 31114130--31114300 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
31114120 GGATGGTTGA
* *
31114130 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
31114195 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
31114223 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
31114288 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
31114301 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:31117832 original size:17 final size:17
Alignment explanation
Indices: 31117812--31117849 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
31117802 TTTTCTTTTA
31117812 TTTTTAAGATTCATTCG
1 TTTTTAAGATTCATTCG
*
31117829 TTTTTAAGATTCATTTG
1 TTTTTAAGATTCATTCG
31117846 TTTT
1 TTTT
31117850 CCTTAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.21, C:0.08, G:0.11, T:0.61
Consensus pattern (17 bp):
TTTTTAAGATTCATTCG
Found at i:31118101 original size:21 final size:21
Alignment explanation
Indices: 31118072--31118119 Score: 87
Period size: 21 Copynumber: 2.2 Consensus size: 21
31118062 TATTTATTTC
31118072 ATTATCAGAAAATCCCTGAATA
1 ATTA-CAGAAAATCCCTGAATA
31118094 ATTACAGAAAATCCCTGAATA
1 ATTACAGAAAATCCCTGAATA
31118115 ATTAC
1 ATTAC
31118120 CTTGTTCTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 22 0.85
22 4 0.15
ACGTcount: A:0.46, C:0.19, G:0.08, T:0.27
Consensus pattern (21 bp):
ATTACAGAAAATCCCTGAATA
Found at i:31122950 original size:39 final size:39
Alignment explanation
Indices: 31122906--31122991 Score: 154
Period size: 39 Copynumber: 2.2 Consensus size: 39
31122896 GCATGAATTG
31122906 GTAAGTTTTGTTATTTAATGTGGTATGCATGGATGGCTT
1 GTAAGTTTTGTTATTTAATGTGGTATGCATGGATGGCTT
*
31122945 GTAAGTTTTGTTATTTGATGTGGTATGCATGGATGGCTT
1 GTAAGTTTTGTTATTTAATGTGGTATGCATGGATGGCTT
*
31122984 GAAAGTTT
1 GTAAGTTT
31122992 GGCTTGATAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.21, C:0.05, G:0.29, T:0.45
Consensus pattern (39 bp):
GTAAGTTTTGTTATTTAATGTGGTATGCATGGATGGCTT
Found at i:31136608 original size:24 final size:25
Alignment explanation
Indices: 31136514--31136607 Score: 138
Period size: 25 Copynumber: 3.8 Consensus size: 25
31136504 TTGATTAAGT
*
31136514 TAAAATGATTAAATTGTAAAAGAGG
1 TAAAAGGATTAAATTGTAAAAGAGG
*
31136539 TAAAAAGATTAAATTGTAAAAGAGG
1 TAAAAGGATTAAATTGTAAAAGAGG
*
31136564 TAAAAGGATTAAATT-TTAAAGAGG
1 TAAAAGGATTAAATTGTAAAAGAGG
31136588 TAAAAGGATT-AATTAGTAAA
1 TAAAAGGATTAAATT-GTAAA
31136608 GGGACCAAAA
Statistics
Matches: 63, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
23 4 0.06
24 18 0.29
25 41 0.65
ACGTcount: A:0.53, C:0.00, G:0.19, T:0.28
Consensus pattern (25 bp):
TAAAAGGATTAAATTGTAAAAGAGG
Found at i:31141507 original size:33 final size:32
Alignment explanation
Indices: 31141470--31141539 Score: 90
Period size: 33 Copynumber: 2.1 Consensus size: 32
31141460 ACTTCTCTAA
31141470 ATTAATATAATTTTATGT-T-TTTTATATTATAAT
1 ATTAA-ATAATTTTAT-TATATTTTA-ATTATAAT
31141503 ATTAAATAATTTTATTCATATTTTAATTATAAT
1 ATTAAATAATTTTATT-ATATTTTAATTATAAT
31141536 ATTA
1 ATTA
31141540 TTTCTTAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
31 1 0.03
32 10 0.29
33 18 0.53
34 5 0.15
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.57
Consensus pattern (32 bp):
ATTAAATAATTTTATTATATTTTAATTATAAT
Found at i:31150516 original size:27 final size:27
Alignment explanation
Indices: 31150486--31150663 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
31150476 ATATTGAGTC
* * * *
31150486 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
31150513 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
31150540 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
31150568 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
31150595 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
31150622 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
31150649 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
31150664 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:31150625 original size:82 final size:81
Alignment explanation
Indices: 31150507--31150662 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
31150497 TGCTATATAA
* *
31150507 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
31150572 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
31150589 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
31150653 CACTTAGTGC
65 CACTTAGTGC
31150663 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:31174437 original size:12 final size:13
Alignment explanation
Indices: 31174401--31174438 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
31174391 AAGTATTTGA
31174401 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
31174414 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
31174428 CTTG-TCTTAAT
1 CTTGTTCTTAAT
31174439 ATTCCAGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:31186698 original size:38 final size:38
Alignment explanation
Indices: 31186647--31186723 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
31186637 ATCATAAATC
31186647 ATACAAGATGAGACTAGCCACAGATATATATACATACT
1 ATACAAGATGAGACTAGCCACAGATATATATACATACT
31186685 ATACAAGATGAGACTAGCCACAGATATATATACATACT
1 ATACAAGATGAGACTAGCCACAGATATATATACATACT
31186723 A
1 A
31186724 ACATATACCA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.45, C:0.18, G:0.13, T:0.23
Consensus pattern (38 bp):
ATACAAGATGAGACTAGCCACAGATATATATACATACT
Found at i:31188891 original size:219 final size:219
Alignment explanation
Indices: 31188512--31188952 Score: 873
Period size: 219 Copynumber: 2.0 Consensus size: 219
31188502 TTTAGATCGG
31188512 GAAAAAATGAAAGTTGTCGACTAGTCATCCCGTTCCATTTTACATCGTCCGAGGTAAGTTTATAG
1 GAAAAAATGAAAGTTGTCGACTAGTCATCCCGTTCCATTTTACATCGTCCGAGGTAAGTTTATAG
*
31188577 GCAAATAGACGTGTTTAATTGTAGATAAATGTTAAATATATATGATGGTATGAAAAATATGAATT
66 GCAAATAGACGTGTTTAATTGTAGATAAATGTTAAAGATATATGATGGTATGAAAAATATGAATT
31188642 TATATATGCTTATGCTGAATGTGAATAAGCTTGGTAACCATGTTCAAGCATTTGTTTTGATCGAG
131 TATATATGCTTATGCTGAATGTGAATAAGCTTGGTAACCATGTTCAAGCATTTGTTTTGATCGAG
31188707 TTACGACATCCGAAAGCCCCGTAT
196 TTACGACATCCGAAAGCCCCGTAT
31188731 GAAAAAATGAAAGTTGTCGACTAGTCATCCCGTTCCATTTTACATCGTCCGAGGTAAGTTTATAG
1 GAAAAAATGAAAGTTGTCGACTAGTCATCCCGTTCCATTTTACATCGTCCGAGGTAAGTTTATAG
31188796 GCAAATAGACGTGTTTAATTGTAGATAAATGTTAAAGATATATGATGGTATGAAAAATATGAATT
66 GCAAATAGACGTGTTTAATTGTAGATAAATGTTAAAGATATATGATGGTATGAAAAATATGAATT
31188861 TATATATGCTTATGCTGAATGTGAATAAGCTTGGTAACCATGTTCAAGCATTTGTTTTGATCGAG
131 TATATATGCTTATGCTGAATGTGAATAAGCTTGGTAACCATGTTCAAGCATTTGTTTTGATCGAG
31188926 TTACGACATCCGAAAGCCCCGTAT
196 TTACGACATCCGAAAGCCCCGTAT
31188950 GAA
1 GAA
31188953 CCTTAGGAAT
Statistics
Matches: 221, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
219 221 1.00
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.33
Consensus pattern (219 bp):
GAAAAAATGAAAGTTGTCGACTAGTCATCCCGTTCCATTTTACATCGTCCGAGGTAAGTTTATAG
GCAAATAGACGTGTTTAATTGTAGATAAATGTTAAAGATATATGATGGTATGAAAAATATGAATT
TATATATGCTTATGCTGAATGTGAATAAGCTTGGTAACCATGTTCAAGCATTTGTTTTGATCGAG
TTACGACATCCGAAAGCCCCGTAT
Found at i:31196351 original size:12 final size:13
Alignment explanation
Indices: 31196334--31196371 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
31196324 ATCCTAGAAT
31196334 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
31196346 ATTAAGAACACATA
1 ATTAAGAACA-AGA
31196360 ATTAAGAACAAG
1 ATTAAGAACAAG
31196372 TCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:31213042 original size:7 final size:7
Alignment explanation
Indices: 31213030--31213064 Score: 61
Period size: 7 Copynumber: 5.0 Consensus size: 7
31213020 GAATTCTAGT
31213030 CCCTAAA
1 CCCTAAA
31213037 CCCTAAA
1 CCCTAAA
*
31213044 CTCTAAA
1 CCCTAAA
31213051 CCCTAAA
1 CCCTAAA
31213058 CCCTAAA
1 CCCTAAA
31213065 ACTTAGGCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.43, C:0.40, G:0.00, T:0.17
Consensus pattern (7 bp):
CCCTAAA
Found at i:31222973 original size:13 final size:13
Alignment explanation
Indices: 31222934--31222973 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
31222924 TTTAAATCAA
*
31222934 ACTTTCCAAAAGC
1 ACTTTTCAAAAGC
* *
31222947 ACTTTTCCACAGC
1 ACTTTTCAAAAGC
31222960 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
31222973 A
1 A
31222974 TTGCTAAACT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.35, C:0.30, G:0.07, T:0.28
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:31223934 original size:57 final size:58
Alignment explanation
Indices: 31223857--31223966 Score: 168
Period size: 57 Copynumber: 1.9 Consensus size: 58
31223847 GGTGAATACA
* *
31223857 GAGAAATGTGAAACATTTGGAAATGATTATACTTTTCTCCAAAATGAAAATGAAAATG
1 GAGAAATGTGAAACATTTGGAAATGAATATACTTTTCTCCAAAATCAAAATGAAAATG
* **
31223915 GAGAAATG-GAATCATTTGGAAATGAATATGGTTTTCTCCAAAATCAAAATGA
1 GAGAAATGTGAAACATTTGGAAATGAATATACTTTTCTCCAAAATCAAAATGA
31223967 CCTAGAAATG
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 39 0.83
58 8 0.17
ACGTcount: A:0.44, C:0.09, G:0.18, T:0.29
Consensus pattern (58 bp):
GAGAAATGTGAAACATTTGGAAATGAATATACTTTTCTCCAAAATCAAAATGAAAATG
Found at i:31225484 original size:28 final size:28
Alignment explanation
Indices: 31225452--31225506 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
31225442 GTCACTAAAT
*
31225452 ACAGATATTTTGTGGCA-ATGCCACCAGA
1 ACAGATAATTTGTGGCATA-GCCACCAGA
31225480 ACAGATAATTTGTGGCATAGCCACCAG
1 ACAGATAATTTGTGGCATAGCCACCAG
31225507 GATGCTTCCT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 24 0.96
29 1 0.04
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.24
Consensus pattern (28 bp):
ACAGATAATTTGTGGCATAGCCACCAGA
Found at i:31225659 original size:28 final size:28
Alignment explanation
Indices: 31225612--31225676 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
31225602 AAATTAACCC
*
31225612 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
31225640 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
31225668 TAGGGGTAT
1 TAGGGGTAT
31225677 TCTAGTAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:31232396 original size:20 final size:22
Alignment explanation
Indices: 31232365--31232409 Score: 76
Period size: 20 Copynumber: 2.1 Consensus size: 22
31232355 AAGTTGCAAA
31232365 TTTATATTTTTCTTCTTCT-TT
1 TTTATATTTTTCTTCTTCTATT
31232386 TTTAT-TTTTTCTTCTTCTATT
1 TTTATATTTTTCTTCTTCTATT
31232407 TTT
1 TTT
31232410 CTTCTTCTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 13 0.57
21 10 0.43
ACGTcount: A:0.09, C:0.13, G:0.00, T:0.78
Consensus pattern (22 bp):
TTTATATTTTTCTTCTTCTATT
Found at i:31232397 original size:14 final size:15
Alignment explanation
Indices: 31232388--31232431 Score: 58
Period size: 14 Copynumber: 3.1 Consensus size: 15
31232378 TCTTCTTTTT
31232388 TATTTTTTCTTCTTC
1 TATTTTTTCTTCTTC
31232403 TA-TTTTTCTTCTTC
1 TATTTTTTCTTCTTC
31232417 T-TGTTTTTCTT-TTC
1 TAT-TTTTTCTTCTTC
31232431 T
1 T
31232432 CCCCTATAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 17 0.63
15 10 0.37
ACGTcount: A:0.05, C:0.18, G:0.02, T:0.75
Consensus pattern (15 bp):
TATTTTTTCTTCTTC
Found at i:31232417 original size:20 final size:20
Alignment explanation
Indices: 31232374--31232418 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
31232364 ATTTATATTT
* *
31232374 TTCTTCTTCTTTTTTATTTT
1 TTCTTCTTCTTTTTTACTTC
31232394 TTCTTCTTCTATTTTT-CTTC
1 TTCTTCTTCT-TTTTTACTTC
31232414 TTCTT
1 TTCTT
31232419 GTTTTTCTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 17 0.77
21 5 0.23
ACGTcount: A:0.04, C:0.20, G:0.00, T:0.76
Consensus pattern (20 bp):
TTCTTCTTCTTTTTTACTTC
Found at i:31232431 original size:17 final size:15
Alignment explanation
Indices: 31232371--31232431 Score: 50
Period size: 17 Copynumber: 3.7 Consensus size: 15
31232361 CAAATTTATA
*
31232371 TTTTTCTTCTTCTTTT
1 TTTTTTTTCTTC-TTT
31232387 TTATTTTTTCTTCTTCT
1 TT-TTTTTTCTTCTT-T
*
31232404 ATTTTTCTTCTTCTTGT
1 -TTTTTTTTCTTCTT-T
31232421 TTTTCTTTTCT
1 TTTT-TTTTCT
31232432 CCCCTATAGT
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
16 8 0.22
17 27 0.73
18 2 0.05
ACGTcount: A:0.03, C:0.18, G:0.02, T:0.77
Consensus pattern (15 bp):
TTTTTTTTCTTCTTT
Found at i:31233894 original size:20 final size:20
Alignment explanation
Indices: 31233850--31233887 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
31233840 CTATTTTATT
31233850 ATGGG-CCAACTGTATTAAA
1 ATGGGCCCAACTGTATTAAA
*
31233869 ATGGGCCCAACTGTGTTAA
1 ATGGGCCCAACTGTATTAA
31233888 TAAGGGCAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTAAA
Found at i:31238326 original size:6 final size:6
Alignment explanation
Indices: 31238299--31238367 Score: 61
Period size: 6 Copynumber: 11.3 Consensus size: 6
31238289 AAAAGTCTAG
* * **
31238299 AAAA-A AAAATA AATAGA AAAATA AAAATA ATAACCA AAAATA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA A-AAATA AAAATA AAAATA
31238347 AGAAA-A AAATATA AAAATA AA
1 A-AAATA AAA-ATA AAAATA AA
31238368 TGGACTCAAT
Statistics
Matches: 51, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
5 6 0.12
6 34 0.67
7 11 0.22
ACGTcount: A:0.80, C:0.03, G:0.03, T:0.14
Consensus pattern (6 bp):
AAAATA
Found at i:31238337 original size:19 final size:18
Alignment explanation
Indices: 31238315--31238366 Score: 68
Period size: 19 Copynumber: 2.8 Consensus size: 18
31238305 AAATAAATAG
* *
31238315 AAAAATAAAAATAATAACC
1 AAAAATAAAAATAAGAA-A
31238334 AAAAATAAAAATAAGAAA
1 AAAAATAAAAATAAGAAA
31238352 AAAATATAAAAATAA
1 AAAA-ATAAAAATAA
31238367 ATGGACTCAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 4 0.13
19 26 0.87
ACGTcount: A:0.79, C:0.04, G:0.02, T:0.15
Consensus pattern (18 bp):
AAAAATAAAAATAAGAAA
Found at i:31241507 original size:39 final size:39
Alignment explanation
Indices: 31241393--31241543 Score: 180
Period size: 39 Copynumber: 3.8 Consensus size: 39
31241383 ATATTTGATG
* *
31241393 TGTATTCGGGCTTCAAGACCCGCAGGCTATAC--GCTGGAAT
1 TGTATTCGGACTT-AAGATCCGCAGGCT-T-CGTGCTGGAAT
* * *
31241433 TATATTCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAAT
1 TGTATTCGGACTT-AAGATCCGCAGGCTTCGTGCTGGAAT
* *
31241473 TGTATTCGGACTTAAGGTCCGCAGGCTTCTTGCTGGAAT
1 TGTATTCGGACTTAAGATCCGCAGGCTTCGTGCTGGAAT
*
31241512 TGTATCCGGACTTAAGATCCGCAGGCTTCGTG
1 TGTATTCGGACTTAAGATCCGCAGGCTTCGTG
31241544 TACTATATCT
Statistics
Matches: 99, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
38 1 0.01
39 53 0.54
40 45 0.45
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.28
Consensus pattern (39 bp):
TGTATTCGGACTTAAGATCCGCAGGCTTCGTGCTGGAAT
Found at i:31241600 original size:39 final size:35
Alignment explanation
Indices: 31241514--31241619 Score: 104
Period size: 35 Copynumber: 2.9 Consensus size: 35
31241504 GCTGGAATTG
* *
31241514 TATCCGGACTTAAGATCCGCAGGCTTCGTGTACTA
1 TATCCGGACTTAAGGTCCACAGGCTTCGTGTACTA
*
31241549 TATCTGGACTTAAGGTCCACAGGCTTCGTACTAGTACTA
1 TATCCGGACTTAAGGTCCACAGGCTTCG---T-GTACTA
* * * *
31241588 TATCCGGGCTTAAAGTCCCATAGGCTTTGTGT
1 TATCCGGACTTAAGGT-CCACAGGCTTCGTGT
31241620 TGGTGATTGA
Statistics
Matches: 58, Mismatches: 8, Indels: 9
0.77 0.11 0.12
Matches are distributed among these distances:
35 25 0.43
36 2 0.03
37 1 0.02
38 1 0.02
39 19 0.33
40 10 0.17
ACGTcount: A:0.23, C:0.24, G:0.23, T:0.31
Consensus pattern (35 bp):
TATCCGGACTTAAGGTCCACAGGCTTCGTGTACTA
Found at i:31243391 original size:3 final size:3
Alignment explanation
Indices: 31243383--31243425 Score: 52
Period size: 3 Copynumber: 14.3 Consensus size: 3
31243373 ATTAAAGGAT
* *
31243383 TAA TAA TAAA TAT TAA TGA -AA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
31243426 CGAAACAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
2 1 0.03
3 30 0.88
4 3 0.09
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:31243397 original size:21 final size:21
Alignment explanation
Indices: 31243354--31243412 Score: 55
Period size: 21 Copynumber: 2.7 Consensus size: 21
31243344 AGAAAAAAAT
*
31243354 AGAAATAATCATAAACTAAATTAA
1 AGAAATAATAATAAA-T--ATTAA
* *
31243378 AGGATTAATAATAAATATTAA
1 AGAAATAATAATAAATATTAA
*
31243399 TGAAATAATAATAA
1 AGAAATAATAATAA
31243413 TAATAATAAT
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
21 16 0.55
23 1 0.03
24 12 0.41
ACGTcount: A:0.61, C:0.03, G:0.07, T:0.29
Consensus pattern (21 bp):
AGAAATAATAATAAATATTAA
Found at i:31245865 original size:21 final size:21
Alignment explanation
Indices: 31245832--31245871 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
31245822 CCGATTTTTG
* *
31245832 CTTATCTTGACTTACCTCAAC
1 CTTACCTTAACTTACCTCAAC
31245853 CTTACCTTAACTTACCTCA
1 CTTACCTTAACTTACCTCA
31245872 CTTTCTTGCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.35, G:0.03, T:0.38
Consensus pattern (21 bp):
CTTACCTTAACTTACCTCAAC
Found at i:31247415 original size:6 final size:6
Alignment explanation
Indices: 31247399--31247444 Score: 51
Period size: 6 Copynumber: 8.0 Consensus size: 6
31247389 ATTAGTAAAC
* * *
31247399 AAAAAT TAAAAT AAAAAT AAAAA- AGAAAT -GAAAT AAAAAT AAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
31247445 GGCTAAAGTA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
5 9 0.26
6 25 0.74
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.17
Consensus pattern (6 bp):
AAAAAT
Found at i:31256822 original size:12 final size:12
Alignment explanation
Indices: 31256799--31256830 Score: 55
Period size: 12 Copynumber: 2.6 Consensus size: 12
31256789 TATTTTCATC
31256799 TATTTGTTTATTT
1 TATTT-TTTATTT
31256812 TATTTTTTATTT
1 TATTTTTTATTT
31256824 TATTTTT
1 TATTTTT
31256831 AAATAATACA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.81
Consensus pattern (12 bp):
TATTTTTTATTT
Found at i:31261228 original size:46 final size:46
Alignment explanation
Indices: 31261161--31261329 Score: 214
Period size: 46 Copynumber: 3.7 Consensus size: 46
31261151 CGCCCCTAAG
*
31261161 TGAACTCGGACTCAACTCAACGAGCTCGGACGTTAGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACGTTAGCATCCATAAA
* * * * **
31261207 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TTACATCTCA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACG-TTAGCATCCAT-AAA
* * * *
31261254 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGACGTTAGCATCCATAAA
31261300 TGAACTCGGACTCAACTCAACGAGTTCGGA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA
31261330 TGCTCAACCA
Statistics
Matches: 102, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
46 65 0.64
47 37 0.36
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.21
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGACGTTAGCATCCATAAA
Found at i:31261271 original size:93 final size:93
Alignment explanation
Indices: 31261162--31261332 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
31261152 GCCCCTAAGT
*
31261162 GAACTCGGACTCAACTCAACGAGCTCGGACGTTAGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTAGCATCCATAAATGAACTCGGACTCAACTCAA
31261227 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
31261255 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTAGCATCCATAAATGAACTCGGACTCAACTCAA
31261320 CGAGTTCGGATGC
66 CGAGTTCGGATGC
31261333 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTAGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:31264555 original size:62 final size:62
Alignment explanation
Indices: 31264478--31264640 Score: 202
Period size: 62 Copynumber: 2.6 Consensus size: 62
31264468 ACATATTGCC
** * * *
31264478 ACACGGCCTGGGCACATGCCTATGTCCCTGGCCGTGTGGTTTTATATC-ATTAACAGTGATTT
1 ACACGGCCTGGGCACATGCCCGTGTCCCTGGCCGTGTGATTTTATA-CAATGAACAGTGAGTT
* * * *
31264540 ACACGACCTGGGCACATGCCCGTGTTCCTAGTCGTGTGATTTTATACAATGAACAGTGAGTT
1 ACACGGCCTGGGCACATGCCCGTGTCCCTGGCCGTGTGATTTTATACAATGAACAGTGAGTT
* * *
31264602 ACACGGCCTGGCCACACGCCCGTGTCCCTGGCTGTGTGA
1 ACACGGCCTGGGCACATGCCCGTGTCCCTGGCCGTGTGA
31264641 ACCTTGCACT
Statistics
Matches: 84, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
61 1 0.01
62 83 0.99
ACGTcount: A:0.20, C:0.27, G:0.26, T:0.28
Consensus pattern (62 bp):
ACACGGCCTGGGCACATGCCCGTGTCCCTGGCCGTGTGATTTTATACAATGAACAGTGAGTT
Found at i:31265275 original size:27 final size:29
Alignment explanation
Indices: 31265210--31265276 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 29
31265200 TCGATTGCGG
31265210 AAAGAAAAAATGAAAAAAAATTTAGAAGA
1 AAAGAAAAAATGAAAAAAAATTTAGAAGA
* *
31265239 AGAAGCAAAAAT-TAAAAAAA-TT-GAAGTA
1 A-AAGAAAAAATGAAAAAAAATTTAGAAG-A
31265267 AAAGAAAAAA
1 AAAGAAAAAA
31265277 AATGATAACT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
27 12 0.36
28 4 0.12
29 8 0.24
30 9 0.27
ACGTcount: A:0.72, C:0.01, G:0.13, T:0.13
Consensus pattern (29 bp):
AAAGAAAAAATGAAAAAAAATTTAGAAGA
Found at i:31271722 original size:62 final size:62
Alignment explanation
Indices: 31271645--31271789 Score: 193
Period size: 62 Copynumber: 2.3 Consensus size: 62
31271635 AGCACAAACA
* * * * * *
31271645 GAGTCACACAGCCTGGACACACATTCGTGTCCCTGGCTGTGTGTTTTTATATC-ATGAACAGT
1 GAGTTACACGGCCTGGGCACACACTCGTGTCCCTGGCTGTGTGATTTTATA-CAATGAACAAT
* *
31271707 GAGTTACACGGCCTGGGCACACGCTCGTGTTCCTGGCTGTGTGATTTTATACAATGAACAAT
1 GAGTTACACGGCCTGGGCACACACTCGTGTCCCTGGCTGTGTGATTTTATACAATGAACAAT
*
31271769 AAGTTACACGGCCTGGGCACA
1 GAGTTACACGGCCTGGGCACA
31271790 TATGGCTCTT
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
61 1 0.01
62 72 0.99
ACGTcount: A:0.23, C:0.24, G:0.25, T:0.28
Consensus pattern (62 bp):
GAGTTACACGGCCTGGGCACACACTCGTGTCCCTGGCTGTGTGATTTTATACAATGAACAAT
Found at i:31273152 original size:21 final size:19
Alignment explanation
Indices: 31273128--31273171 Score: 52
Period size: 21 Copynumber: 2.2 Consensus size: 19
31273118 AAACTAAAAA
*
31273128 ATTTATAAAATAAAATAGTTT
1 ATTTATAAAAGAAAAT--TTT
*
31273149 ATTTTTAAAAGAAAATTTT
1 ATTTATAAAAGAAAATTTT
31273168 ATTT
1 ATTT
31273172 TTATTTTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 7 0.33
21 14 0.67
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (19 bp):
ATTTATAAAAGAAAATTTT
Found at i:31274153 original size:18 final size:18
Alignment explanation
Indices: 31274109--31274162 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
31274099 ACTAGTGCCT
*
31274109 TTCAGTCGATCAGTAACACA
1 TTCAGTC-A-CAGTATCACA
* *
31274129 TTTAGTCACAGTATCATA
1 TTCAGTCACAGTATCACA
*
31274147 TTCAGTCACGGTATCA
1 TTCAGTCACAGTATCA
31274163 GTAGTTCTCA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
18 22 0.76
19 1 0.03
20 6 0.21
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.31
Consensus pattern (18 bp):
TTCAGTCACAGTATCACA
Found at i:31276029 original size:6 final size:6
Alignment explanation
Indices: 31276018--31276071 Score: 63
Period size: 6 Copynumber: 8.7 Consensus size: 6
31276008 AAGGAAGAAG
* * *
31276018 AATAAA AATAAA AATAAA TAATAAA AGTAAA AGTAAA AGTAAA AATAAA
1 AATAAA AATAAA AATAAA -AATAAA AATAAA AATAAA AATAAA AATAAA
31276067 TAATA
1 -AATA
31276072 TTAATATTAA
Statistics
Matches: 44, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
6 34 0.77
7 10 0.23
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.20
Consensus pattern (6 bp):
AATAAA
Found at i:31282291 original size:6 final size:6
Alignment explanation
Indices: 31282284--31282328 Score: 81
Period size: 6 Copynumber: 7.5 Consensus size: 6
31282274 AATAGGGATT
*
31282284 GGGGTT GGGGTA GGGGTA GGGGTA GGGGTA GGGGTA GGGGTA GGG
1 GGGGTA GGGGTA GGGGTA GGGGTA GGGGTA GGGGTA GGGGTA GGG
31282329 AGGAACAAAG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.13, C:0.00, G:0.69, T:0.18
Consensus pattern (6 bp):
GGGGTA
Found at i:31289078 original size:13 final size:13
Alignment explanation
Indices: 31289062--31289086 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
31289052 TGAATTCATA
31289062 TGTGAAATTGTGT
1 TGTGAAATTGTGT
31289075 TGTGAAATTGTG
1 TGTGAAATTGTG
31289087 GAGTAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.32, T:0.44
Consensus pattern (13 bp):
TGTGAAATTGTGT
Found at i:31297704 original size:20 final size:20
Alignment explanation
Indices: 31297679--31297720 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
31297669 ATTAGAATGT
31297679 AAATATT-AAATTAAAAACAA
1 AAATATTAAAATT-AAAACAA
31297699 AAATATTAAAATTAAAACAA
1 AAATATTAAAATTAAAACAA
31297719 AA
1 AA
31297721 TTGGATAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 16 0.76
21 5 0.24
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (20 bp):
AAATATTAAAATTAAAACAA
Found at i:31299158 original size:15 final size:16
Alignment explanation
Indices: 31299133--31299166 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
31299123 AAGATGAAGC
*
31299133 GTTTGATAAATTTAAA
1 GTTTGATAAATCTAAA
31299149 GTTT-ATAAATCTAAA
1 GTTTGATAAATCTAAA
31299164 GTT
1 GTT
31299167 GAAATTCAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.41, C:0.03, G:0.12, T:0.44
Consensus pattern (16 bp):
GTTTGATAAATCTAAA
Found at i:31305257 original size:44 final size:44
Alignment explanation
Indices: 31305194--31305279 Score: 163
Period size: 44 Copynumber: 2.0 Consensus size: 44
31305184 TAGGACTGAG
31305194 ATTTTATTTGGAAATTACACCAACAAGTTCTAAAAATTCTTTTT
1 ATTTTATTTGGAAATTACACCAACAAGTTCTAAAAATTCTTTTT
*
31305238 ATTTTATTTGGAAATTACACCAATAAGTTCTAAAAATTCTTT
1 ATTTTATTTGGAAATTACACCAACAAGTTCTAAAAATTCTTT
31305280 CTATCCTTCC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.07, T:0.43
Consensus pattern (44 bp):
ATTTTATTTGGAAATTACACCAACAAGTTCTAAAAATTCTTTTT
Found at i:31306451 original size:12 final size:12
Alignment explanation
Indices: 31306434--31306459 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
31306424 TTATAGAACA
31306434 CATTTACGGCCT
1 CATTTACGGCCT
31306446 CATTTACGGCCT
1 CATTTACGGCCT
31306458 CA
1 CA
31306460 AAAACGGGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.19, C:0.35, G:0.15, T:0.31
Consensus pattern (12 bp):
CATTTACGGCCT
Found at i:31307633 original size:14 final size:14
Alignment explanation
Indices: 31307614--31307643 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
31307604 TTATATCGAG
31307614 ACCAATCCAAATCA
1 ACCAATCCAAATCA
*
31307628 ACCAATCCAATTCA
1 ACCAATCCAAATCA
31307642 AC
1 AC
31307644 ATATTTTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.17
Consensus pattern (14 bp):
ACCAATCCAAATCA
Found at i:31320140 original size:29 final size:29
Alignment explanation
Indices: 31320089--31320145 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
31320079 ATTGGTTATG
31320089 TATATTTTTAATTTTAAGATAAT-TTTTA
1 TATATTTTTAATTTTAAGATAATATTTTA
31320117 TATATTTTTTAATTTTAA-ATTAATATTTT
1 TATA-TTTTTAATTTTAAGA-TAATATTTT
31320146 TATTTTATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
28 5 0.19
29 17 0.65
30 4 0.15
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (29 bp):
TATATTTTTAATTTTAAGATAATATTTTA
Found at i:31320814 original size:23 final size:23
Alignment explanation
Indices: 31320788--31320834 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
31320778 TCACGTTGCA
*
31320788 ACTTCAGACATCTCGACGTCATG
1 ACTTCAGACATCTCGACATCATG
*
31320811 ACTTTAGACATCTCGACATCATG
1 ACTTCAGACATCTCGACATCATG
31320834 A
1 A
31320835 TGTCACTTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (23 bp):
ACTTCAGACATCTCGACATCATG
Found at i:31328204 original size:17 final size:17
Alignment explanation
Indices: 31328184--31328223 Score: 80
Period size: 17 Copynumber: 2.4 Consensus size: 17
31328174 GAATATGACC
31328184 TATTTCTCTAACTTCAT
1 TATTTCTCTAACTTCAT
31328201 TATTTCTCTAACTTCAT
1 TATTTCTCTAACTTCAT
31328218 TATTTC
1 TATTTC
31328224 CATTTGTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.23, C:0.23, G:0.00, T:0.55
Consensus pattern (17 bp):
TATTTCTCTAACTTCAT
Found at i:31330112 original size:27 final size:27
Alignment explanation
Indices: 31330082--31330133 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
31330072 TAATAAAATA
31330082 TGTATTTCTCTTTGTCTTACTGTATTT
1 TGTATTTCTCTTTGTCTTACTGTATTT
31330109 TGTATTTCTCTTTGTCTTACTGTAT
1 TGTATTTCTCTTTGTCTTACTGTAT
31330134 ATTCTCTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.12, C:0.15, G:0.12, T:0.62
Consensus pattern (27 bp):
TGTATTTCTCTTTGTCTTACTGTATTT
Found at i:31330864 original size:4 final size:4
Alignment explanation
Indices: 31330855--31330888 Score: 68
Period size: 4 Copynumber: 8.5 Consensus size: 4
31330845 GAATGAGAAG
31330855 AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AA
1 AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AA
31330889 TGGAGGGTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AAGA
Found at i:31335221 original size:6 final size:6
Alignment explanation
Indices: 31335210--31335247 Score: 76
Period size: 6 Copynumber: 6.3 Consensus size: 6
31335200 ATATAAAAAG
31335210 CACCCA CACCCA CACCCA CACCCA CACCCA CACCCA CA
1 CACCCA CACCCA CACCCA CACCCA CACCCA CACCCA CA
31335248 TATATATAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.34, C:0.66, G:0.00, T:0.00
Consensus pattern (6 bp):
CACCCA
Found at i:31335980 original size:68 final size:68
Alignment explanation
Indices: 31335908--31336035 Score: 204
Period size: 68 Copynumber: 1.9 Consensus size: 68
31335898 AAGCATATAT
* *
31335908 TTAGCCAATTTATTTTTGGGTTCATAAGAAATT-ATGGATATTTTTAGTTTGTTTGATTTTTGTG
1 TTAGCCAATTTATTTTCGGGTTCATAAGAAATTGA-AGATATTTTTAGTTTGTTTGATTTTTGTG
31335972 CCAA
65 CCAA
* *
31335976 TTAGCCAATTTGTTTTCGGGTTCATAAGAAATTGAAGATTTTTTTAGTTTGTTTGATTTT
1 TTAGCCAATTTATTTTCGGGTTCATAAGAAATTGAAGATATTTTTAGTTTGTTTGATTTT
31336036 GTGTCGGCTG
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
68 54 0.98
69 1 0.02
ACGTcount: A:0.24, C:0.07, G:0.18, T:0.51
Consensus pattern (68 bp):
TTAGCCAATTTATTTTCGGGTTCATAAGAAATTGAAGATATTTTTAGTTTGTTTGATTTTTGTGC
CAA
Found at i:31341031 original size:22 final size:22
Alignment explanation
Indices: 31341006--31341049 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
31340996 AAACCCTAAG
31341006 GTTATCCTATAAAGTCCTACTA
1 GTTATCCTATAAAGTCCTACTA
*
31341028 GTTATCCTGTAAAGTCCTACTA
1 GTTATCCTATAAAGTCCTACTA
31341050 CTAGGTACAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.30, C:0.23, G:0.11, T:0.36
Consensus pattern (22 bp):
GTTATCCTATAAAGTCCTACTA
Found at i:31341737 original size:15 final size:15
Alignment explanation
Indices: 31341719--31341822 Score: 60
Period size: 15 Copynumber: 7.2 Consensus size: 15
31341709 AAAAATCTCC
31341719 AAATCAAAATACCCT
1 AAATCAAAATACCCT
* * *
31341734 AAATGAAAATCCCCA
1 AAATCAAAATACCCT
31341749 AAATC-AAA-ACTCCT
1 AAATCAAAATAC-CCT
**
31341763 AACCCAAAAT-CCCT
1 AAATCAAAATACCCT
* *
31341777 AAATCCGACA-A-CCT
1 AAAT-CAAAATACCCT
*
31341791 AAATCAAAAT-CCCC
1 AAATCAAAATACCCT
31341805 AAACTCAAAA-ACCCT
1 AAA-TCAAAATACCCT
31341820 AAA
1 AAA
31341823 CATAAACCGA
Statistics
Matches: 64, Mismatches: 16, Indels: 18
0.65 0.16 0.18
Matches are distributed among these distances:
13 4 0.06
14 25 0.39
15 35 0.55
ACGTcount: A:0.51, C:0.32, G:0.02, T:0.15
Consensus pattern (15 bp):
AAATCAAAATACCCT
Found at i:31357090 original size:11 final size:11
Alignment explanation
Indices: 31357074--31357098 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
31357064 TTACTTACTC
31357074 AAGATTGAGGT
1 AAGATTGAGGT
31357085 AAGATTGAGGT
1 AAGATTGAGGT
31357096 AAG
1 AAG
31357099 TCCCACTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.00, G:0.36, T:0.24
Consensus pattern (11 bp):
AAGATTGAGGT
Found at i:31357643 original size:10 final size:10
Alignment explanation
Indices: 31357614--31357788 Score: 75
Period size: 10 Copynumber: 18.1 Consensus size: 10
31357604 AAATTACTCT
31357614 TTTTTTATAA
1 TTTTTTATAA
*
31357624 -TTTCT-T-A
1 TTTTTTATAA
31357631 TTTTTTATAA
1 TTTTTTATAA
* * *
31357641 TTTATTAGAGG
1 TTTTTTATA-A
*
31357652 TTTTTT-TAT
1 TTTTTTATAA
31357661 TTTTTTAT-A
1 TTTTTTATAA
31357670 TATTTTTATAA
1 T-TTTTTATAA
*
31357681 -GTTTTATGAA
1 TTTTTTAT-AA
*
31357691 -TTTTTATAT
1 TTTTTTATAA
31357700 TTTTTTATAA
1 TTTTTTATAA
**
31357710 AATTTTA-AA
1 TTTTTTATAA
*
31357719 TTATTTA-ATA
1 TTTTTTATA-A
*
31357729 TGTTTTATTAA
1 TTTTTTA-TAA
*
31357740 --TTTTATAT
1 TTTTTTATAA
31357748 TTTTTTATAA
1 TTTTTTATAA
* * *
31357758 TTTATTAGAC
1 TTTTTTATAA
* *
31357768 TTTATTAGAA
1 TTTTTTATAA
31357778 TTTTTTATAA
1 TTTTTTATAA
31357788 T
1 T
31357789 ATAAAAAATC
Statistics
Matches: 123, Mismatches: 28, Indels: 28
0.69 0.16 0.16
Matches are distributed among these distances:
7 1 0.01
8 7 0.06
9 31 0.25
10 76 0.62
11 7 0.06
12 1 0.01
ACGTcount: A:0.30, C:0.01, G:0.05, T:0.65
Consensus pattern (10 bp):
TTTTTTATAA
Found at i:31357675 original size:19 final size:19
Alignment explanation
Indices: 31357653--31357755 Score: 61
Period size: 19 Copynumber: 5.4 Consensus size: 19
31357643 TATTAGAGGT
31357653 TTTTTTATTTTTTTATATA
1 TTTTTTATTTTTTTATATA
**
31357672 -TTTTTATAAGTTTTATGA-A
1 TTTTTTAT-TTTTTTAT-ATA
*
31357691 TTTTTATATTTTTTTATAAA
1 TTTTT-TATTTTTTTATATA
* * * *
31357711 ATTTTAAATTATTTA-ATA
1 TTTTTTATTTTTTTATATA
* *
31357729 TGTTTTATTAATTTTATAT-
1 TTTTTTATT-TTTTTATATA
31357748 TTTTTTAT
1 TTTTTTAT
31357756 AATTTATTAG
Statistics
Matches: 61, Mismatches: 16, Indels: 14
0.67 0.18 0.15
Matches are distributed among these distances:
18 14 0.23
19 26 0.43
20 18 0.30
21 3 0.05
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (19 bp):
TTTTTTATTTTTTTATATA
Found at i:31357847 original size:9 final size:9
Alignment explanation
Indices: 31357833--31357872 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
31357823 TTATGAAATA
31357833 TTTATAACT
1 TTTATAACT
31357842 TTTATAACT
1 TTTATAACT
*
31357851 TTTATAAGT
1 TTTATAACT
*
31357860 TTATATAAAT
1 TT-TATAACT
31357870 TTT
1 TTT
31357873 TAATATTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
9 20 0.71
10 8 0.29
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.57
Consensus pattern (9 bp):
TTTATAACT
Found at i:31357872 original size:19 final size:18
Alignment explanation
Indices: 31357821--31357872 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 18
31357811 ATAAATAATA
31357821 TTTTATGAAATATTTATAAC
1 TTTTAT-AAAT-TTTATAAC
* *
31357841 TTTTATAACTTTTATAAG
1 TTTTATAAATTTTATAAC
31357859 TTTATATAAATTTT
1 TTT-TATAAATTTT
31357873 TAATATTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 10 0.36
19 12 0.43
20 6 0.21
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.56
Consensus pattern (18 bp):
TTTTATAAATTTTATAAC
Found at i:31357881 original size:28 final size:30
Alignment explanation
Indices: 31357815--31357881 Score: 70
Period size: 28 Copynumber: 2.3 Consensus size: 30
31357805 AAACTTATAA
*
31357815 ATAATATTTTATGAAATATTTATAACTTTT
1 ATAATATTTTATGAAATATTTATAAATTTT
* *
31357845 ATAA-CTTTTAT-AAGT-TTATATAAATTTT
1 ATAATATTTTATGAAATATT-TATAAATTTT
31357873 -TAATATTTT
1 ATAATATTTT
31357882 TAAATTCTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
27 5 0.16
28 16 0.52
29 6 0.19
30 4 0.13
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.55
Consensus pattern (30 bp):
ATAATATTTTATGAAATATTTATAAATTTT
Found at i:31357898 original size:19 final size:17
Alignment explanation
Indices: 31357865--31357903 Score: 60
Period size: 19 Copynumber: 2.2 Consensus size: 17
31357855 TAAGTTTATA
31357865 TAAATTTTTAATATTTT
1 TAAATTTTTAATATTTT
31357882 TAAATTCTTTAAATATTTT
1 TAAATT-TTT-AATATTTT
31357901 TAA
1 TAA
31357904 GAATATTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 6 0.30
18 3 0.15
19 11 0.55
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (17 bp):
TAAATTTTTAATATTTT
Found at i:31357920 original size:12 final size:11
Alignment explanation
Indices: 31357869--31357940 Score: 51
Period size: 12 Copynumber: 6.5 Consensus size: 11
31357859 TTTATATAAA
31357869 TTTTTAATA--
1 TTTTTAATATT
31357878 TTTTTAA-ATT
1 TTTTTAATATT
* *
31357888 CTTTAAATATT
1 TTTTTAATATT
**
31357899 TTTAAGAATATT
1 TTT-TTAATATT
31357911 TTTTCTAATAATT
1 TTTT-TAAT-ATT
31357924 TTTTTATATATT
1 TTTTTA-ATATT
31357936 TTTTT
1 TTTTT
31357941 TTATTTCATG
Statistics
Matches: 49, Mismatches: 7, Indels: 11
0.73 0.10 0.16
Matches are distributed among these distances:
8 1 0.02
9 7 0.14
10 5 0.10
11 5 0.10
12 22 0.45
13 9 0.18
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (11 bp):
TTTTTAATATT
Found at i:31360433 original size:28 final size:29
Alignment explanation
Indices: 31360402--31360461 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
31360392 TAAAAATATA
*
31360402 TAATACTAACTTTTA-TATT-TTTTTTTGT
1 TAAT-CTAACTTTTATTATTCTTTTTTAGT
* *
31360430 TAATTTGACTTTTATTATTCTTTTTTAGT
1 TAATCTAACTTTTATTATTCTTTTTTAGT
31360459 TAA
1 TAA
31360462 ATTTAACTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 8 0.30
28 8 0.30
29 11 0.41
ACGTcount: A:0.25, C:0.07, G:0.05, T:0.63
Consensus pattern (29 bp):
TAATCTAACTTTTATTATTCTTTTTTAGT
Found at i:31363019 original size:24 final size:24
Alignment explanation
Indices: 31362992--31363039 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
31362982 ATCAAGTGTG
31362992 TATCCATTTATTCCAAAATGACAC
1 TATCCATTTATTCCAAAATGACAC
**
31363016 TATCTGTTTATTCCAAAATGACAC
1 TATCCATTTATTCCAAAATGACAC
31363040 ACTTATAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.35, C:0.23, G:0.06, T:0.35
Consensus pattern (24 bp):
TATCCATTTATTCCAAAATGACAC
Found at i:31367395 original size:3 final size:3
Alignment explanation
Indices: 31367387--31367505 Score: 238
Period size: 3 Copynumber: 39.7 Consensus size: 3
31367377 AGATATTTAC
31367387 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
31367435 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
31367483 TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TT
31367506 TACAAATGGT
Statistics
Matches: 116, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 116 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:31367642 original size:26 final size:24
Alignment explanation
Indices: 31367613--31367660 Score: 69
Period size: 26 Copynumber: 1.9 Consensus size: 24
31367603 AAATAGTTAC
*
31367613 AGAAGAAACGAAATAGAAAGAAAGAA
1 AGAAGAAAAGAAA-AGAAA-AAAGAA
31367639 AGAAGAAAAGAAAAGAAAAAAG
1 AGAAGAAAAGAAAAGAAAAAAG
31367661 GAGAAATTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 4 0.19
25 5 0.24
26 12 0.57
ACGTcount: A:0.73, C:0.02, G:0.23, T:0.02
Consensus pattern (24 bp):
AGAAGAAAAGAAAAGAAAAAAGAA
Found at i:31369124 original size:42 final size:42
Alignment explanation
Indices: 31369073--31369164 Score: 109
Period size: 42 Copynumber: 2.2 Consensus size: 42
31369063 TGGGCGTGTG
* *
31369073 CCCA-GGCCGTGTG-GCAAAGTCAGA-CTTGCCCACAGGTTAGT
1 CCCACGGCCGTGTGAG-AAAGTCAGATC-TGCCCACAGGCTAGC
* *
31369114 CCCACGGCCGTGTGAGTAAGTCAGATCTGCCCACGGGCTAGC
1 CCCACGGCCGTGTGAGAAAGTCAGATCTGCCCACAGGCTAGC
31369156 CCCACGGCC
1 CCCACGGCC
31369165 ATGGGAGCCC
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
41 4 0.09
42 38 0.86
43 2 0.05
ACGTcount: A:0.20, C:0.35, G:0.29, T:0.16
Consensus pattern (42 bp):
CCCACGGCCGTGTGAGAAAGTCAGATCTGCCCACAGGCTAGC
Found at i:31386101 original size:293 final size:293
Alignment explanation
Indices: 31385623--31386205 Score: 1139
Period size: 293 Copynumber: 2.0 Consensus size: 293
31385613 ACAAGAAAGT
31385623 CTTACTTCCCCAAGAATAATCCCCTGGTTTATGACACATTTGAAAGGCTCTTTGGTTGATACAAC
1 CTTACTTCCCCAAGAATAATCCCCTGGTTTATGACACATTTGAAAGGCTCTTTGGTTGATACAAC
31385688 ACCAATGTCATATAGAACCTGAAATATAGAATCAGAAAGCCGTATCAGCAATGTGTAGAAAAAAA
66 ACCAATGTCATATAGAACCTGAAATATAGAATCAGAAAGCCGTATCAGCAATGTGTAGAAAAAAA
31385753 ATTAGACAGTTTTGATTTCCAAAAAGAAAACCAAACAGTTTGTTCTCGCTCTTAGGCAGCACACA
131 ATTAGACAGTTTTGATTTCCAAAAAGAAAACCAAACAGTTTGTTCTCGCTCTTAGGCAGCACACA
* *
31385818 ATCAAGTTAGGACTGCATGTCCCTCTGTATCTCTACAGAACCTTGCAGTCATAAGAACAGCATTG
196 ATCAAGTTAGGACTGCATGTCCCTCTGTATCTCTACAGAACCTTCCAGTCATAAGAACAGCATTA
31385883 CCCTGGTTGAATATGAGAATAGTAGCAGAATTG
261 CCCTGGTTGAATATGAGAATAGTAGCAGAATTG
31385916 CTTACTTCCCCAAGAATAATCCCCTGGTTTATGACACATTTGAAAGGCTCTTTGGTTGATACAAC
1 CTTACTTCCCCAAGAATAATCCCCTGGTTTATGACACATTTGAAAGGCTCTTTGGTTGATACAAC
31385981 ACCAATGTCATATAGAACCTGAAATATAGAATCAGAAAGCCGTATCAGCAATGTGTAGAAAAAAA
66 ACCAATGTCATATAGAACCTGAAATATAGAATCAGAAAGCCGTATCAGCAATGTGTAGAAAAAAA
31386046 ATTAGACAGTTTTGATTTCCAAAAAGAAAACCAAACAGTTTGTTCTCGCTCTTAGGCAGCACACA
131 ATTAGACAGTTTTGATTTCCAAAAAGAAAACCAAACAGTTTGTTCTCGCTCTTAGGCAGCACACA
*
31386111 ATCAAGTTAGGACTGCATGTCCCTCTGTATCTCTACAGAACTTTCCAGTCATAAGAACAGCATTA
196 ATCAAGTTAGGACTGCATGTCCCTCTGTATCTCTACAGAACCTTCCAGTCATAAGAACAGCATTA
31386176 CCCTGGTTGAATATGAGAATAGTAGCAGAA
261 CCCTGGTTGAATATGAGAATAGTAGCAGAA
31386206 AGACAACTGA
Statistics
Matches: 287, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
293 287 1.00
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (293 bp):
CTTACTTCCCCAAGAATAATCCCCTGGTTTATGACACATTTGAAAGGCTCTTTGGTTGATACAAC
ACCAATGTCATATAGAACCTGAAATATAGAATCAGAAAGCCGTATCAGCAATGTGTAGAAAAAAA
ATTAGACAGTTTTGATTTCCAAAAAGAAAACCAAACAGTTTGTTCTCGCTCTTAGGCAGCACACA
ATCAAGTTAGGACTGCATGTCCCTCTGTATCTCTACAGAACCTTCCAGTCATAAGAACAGCATTA
CCCTGGTTGAATATGAGAATAGTAGCAGAATTG
Found at i:31392266 original size:12 final size:12
Alignment explanation
Indices: 31392245--31392281 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
31392235 AAAAAACTAG
31392245 ATATATAAATAA
1 ATATATAAATAA
*
31392257 ATATAGAAATAA
1 ATATATAAATAA
*
31392269 ATAAATAAATAA
1 ATATATAAATAA
31392281 A
1 A
31392282 ATAAGATACA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (12 bp):
ATATATAAATAA
Done.