Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 97 of 284
Found at i:32117584 original size:21 final size:23
Alignment explanation
Indices: 32117551--32117595 Score: 58
Period size: 21 Copynumber: 2.0 Consensus size: 23
32117541 CTTTTTTAAG
32117551 TAATAATTGTAAATA-A-AATTA
1 TAATAATTGTAAATATACAATTA
* *
32117572 TAATTATTTTAAATATACAATTA
1 TAATAATTGTAAATATACAATTA
32117595 T
1 T
32117596 CACAAGTTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 13 0.65
22 1 0.05
23 6 0.30
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (23 bp):
TAATAATTGTAAATATACAATTA
Found at i:32118259 original size:43 final size:44
Alignment explanation
Indices: 32118196--32118279 Score: 143
Period size: 43 Copynumber: 1.9 Consensus size: 44
32118186 TAATTCTAAC
* *
32118196 TTAAATTCTAATTATTTTTAAATGTTTAATTATCACTACTTCTA
1 TTAAATTATAATTATTTTTAAATGTTTAATTATCACAACTTCTA
32118240 TTAAATTATAATTA-TTTTAAATGTTTAATTATCACAACTT
1 TTAAATTATAATTATTTTTAAATGTTTAATTATCACAACTT
32118280 TTTAAACTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
43 25 0.66
44 13 0.34
ACGTcount: A:0.37, C:0.10, G:0.02, T:0.51
Consensus pattern (44 bp):
TTAAATTATAATTATTTTTAAATGTTTAATTATCACAACTTCTA
Found at i:32119117 original size:23 final size:24
Alignment explanation
Indices: 32119087--32119135 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 24
32119077 AATTTTTGAA
* *
32119087 TTTTAAAAATATTTTTTAT-ATTT
1 TTTTAAAAATAATTTTAATGATTT
32119110 TTTTAAAAATAATTTTAATGATTT
1 TTTTAAAAATAATTTTAATGATTT
32119134 TT
1 TT
32119136 AATTTTTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 17 0.74
24 6 0.26
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (24 bp):
TTTTAAAAATAATTTTAATGATTT
Found at i:32119136 original size:22 final size:23
Alignment explanation
Indices: 32119087--32119137 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
32119077 AATTTTTGAA
* *
32119087 TTTTAAAAATATTTTTTATATTT
1 TTTTAAAAATATATTTTATATAT
32119110 TTTTAAAAATA-ATTTTA-ATGAT
1 TTTTAAAAATATATTTTATAT-AT
32119132 TTTTAA
1 TTTTAA
32119138 TTTTTAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 2 0.08
22 12 0.48
23 11 0.44
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (23 bp):
TTTTAAAAATATATTTTATATAT
Found at i:32119162 original size:29 final size:30
Alignment explanation
Indices: 32119109--32119173 Score: 87
Period size: 29 Copynumber: 2.2 Consensus size: 30
32119099 TTTTTATATT
*
32119109 TTTTTAAAAATAATTTTAATGA-TTTTTAA
1 TTTTTAAAAATAATTTTAATAATTTTTTAA
** *
32119138 TTTTTAAAAATAATTTTGGTAATTTTTTAG
1 TTTTTAAAAATAATTTTAATAATTTTTTAA
32119168 TTTTTA
1 TTTTTA
32119174 GTTTTTAAAG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
29 19 0.61
30 12 0.39
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.58
Consensus pattern (30 bp):
TTTTTAAAAATAATTTTAATAATTTTTTAA
Found at i:32122758 original size:63 final size:63
Alignment explanation
Indices: 32122683--32122863 Score: 213
Period size: 63 Copynumber: 2.9 Consensus size: 63
32122673 ACCTCGTTAA
* *
32122683 TTTTACACAAGCACCACACTCTGCACCATCATACCCTGCATCAACACATTCTGC-CTCTTTTAT
1 TTTTACATAAGCACCACACTATGCACCATCATACCCTGCATCAACACATTCTGCAC-CTTTTAT
* * * * * * *
32122746 TTTTACATAAGCACCACACAATGCACCA-CTGTAACTTGCATCAATACCTTCCGCACCTTTTAT
1 TTTTACATAAGCACCACACTATGCACCATC-ATACCCTGCATCAACACATTCTGCACCTTTTAT
* * * *
32122809 TTTTACATAAGCACCATACTATACACTATCATACCCTGTATCAACACATTCTGCA
1 TTTTACATAAGCACCACACTATGCACCATCATACCCTGCATCAACACATTCTGCA
32122864 GGTATATTTT
Statistics
Matches: 95, Mismatches: 20, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
62 1 0.01
63 92 0.97
64 2 0.02
ACGTcount: A:0.30, C:0.33, G:0.07, T:0.30
Consensus pattern (63 bp):
TTTTACATAAGCACCACACTATGCACCATCATACCCTGCATCAACACATTCTGCACCTTTTAT
Found at i:32123627 original size:39 final size:39
Alignment explanation
Indices: 32123584--32123663 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
32123574 GATATGTTAG
32123584 CATCATAAGCTCTGGGTTTCTACAATAACTGCATAACCT
1 CATCATAAGCTCTGGGTTTCTACAATAACTGCATAACCT
*
32123623 CATCATATGCTCTGGGTTTCTACAATAACTGCATAACCT
1 CATCATAAGCTCTGGGTTTCTACAATAACTGCATAACCT
32123662 CA
1 CA
32123664 GTTGGTTTTT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.31
Consensus pattern (39 bp):
CATCATAAGCTCTGGGTTTCTACAATAACTGCATAACCT
Found at i:32130137 original size:20 final size:22
Alignment explanation
Indices: 32130113--32130160 Score: 57
Period size: 20 Copynumber: 2.3 Consensus size: 22
32130103 ATTCAATATG
*
32130113 AATATAAT-TATATTTTTAAAT
1 AATATAATAAATATTTTTAAAT
*
32130134 -ATAT-ATAAATATTTTTGAAT
1 AATATAATAAATATTTTTAAAT
32130154 AATATAA
1 AATATAA
32130161 AATATATGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
19 2 0.09
20 15 0.68
21 4 0.18
22 1 0.05
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (22 bp):
AATATAATAAATATTTTTAAAT
Found at i:32130165 original size:20 final size:20
Alignment explanation
Indices: 32130122--32130161 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
32130112 GAATATAATT
32130122 ATATTTTTAAATATATATAA
1 ATATTTTTAAATATATATAA
*
32130142 ATATTTTTGAATA-ATATAA
1 ATATTTTTAAATATATATAA
32130161 A
1 A
32130162 ATATATGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (20 bp):
ATATTTTTAAATATATATAA
Found at i:32133442 original size:61 final size:60
Alignment explanation
Indices: 32133342--32133491 Score: 205
Period size: 61 Copynumber: 2.5 Consensus size: 60
32133332 AGATTTAACG
* * * *
32133342 TTTGAGTGACTAAAATGAAAGCGCTCTAAGAGTAGGGTGAGAAAATTGC-AAGAATTTCAT
1 TTTGGGTGACTAAAATGAAAGTGCTCTAAGACTAGGGTGACAAAATTGCAAAG-ATTTCAT
32133402 TTTGGTGTGACTAAAATGAAAGTGC-CATAAGACTAGGGTGACAAAATTGCAAAGATTTCAT
1 TTTGG-GTGACTAAAATGAAAGTGCTC-TAAGACTAGGGTGACAAAATTGCAAAGATTTCAT
* *
32133463 TTTGGGTGACCAAAATGAAAGTGCACTAA
1 TTTGGGTGACTAAAATGAAAGTGCTCTAA
32133492 AAGTTAGGTG
Statistics
Matches: 81, Mismatches: 5, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
60 26 0.32
61 52 0.64
62 3 0.04
ACGTcount: A:0.38, C:0.11, G:0.24, T:0.27
Consensus pattern (60 bp):
TTTGGGTGACTAAAATGAAAGTGCTCTAAGACTAGGGTGACAAAATTGCAAAGATTTCAT
Found at i:32136046 original size:30 final size:29
Alignment explanation
Indices: 32135987--32136061 Score: 80
Period size: 28 Copynumber: 2.6 Consensus size: 29
32135977 GAAAATTTAC
* *
32135987 AAAAATTCAAAAAAATATAAAAAGGTATA
1 AAAAATTTACAAAAATATAAAAAGGTATA
* * *
32136016 AGAAA-TTATAAAAATATAAAAAGAATTATA
1 AAAAATTTACAAAAATATAAAAAG--GTATA
32136046 AAAAATTTACAAAAAT
1 AAAAATTTACAAAAAT
32136062 TATGTACATC
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
28 16 0.43
29 4 0.11
30 8 0.22
31 9 0.24
ACGTcount: A:0.68, C:0.03, G:0.05, T:0.24
Consensus pattern (29 bp):
AAAAATTTACAAAAATATAAAAAGGTATA
Found at i:32136062 original size:20 final size:19
Alignment explanation
Indices: 32135995--32136064 Score: 63
Period size: 20 Copynumber: 3.6 Consensus size: 19
32135985 ACAAAAATTC
32135995 AAAAAAA-TATAAAAAGGTAT
1 AAAAAAATTATAAAAA--TAT
*
32136015 -AAGAAATTATAAAAATAT
1 AAAAAAATTATAAAAATAT
*
32136033 AAAAAGAATTATAAAAAATTT
1 AAAAA-AATTAT-AAAAATAT
*
32136054 ACAAAAATTAT
1 AAAAAAATTAT
32136065 GTACATCAAC
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
18 3 0.07
19 8 0.19
20 20 0.48
21 11 0.26
ACGTcount: A:0.67, C:0.01, G:0.06, T:0.26
Consensus pattern (19 bp):
AAAAAAATTATAAAAATAT
Found at i:32136654 original size:22 final size:22
Alignment explanation
Indices: 32136624--32136665 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
32136614 TTGCCACTGC
*
32136624 TTTGTTGTCATTTCGCTATTGT
1 TTTGCTGTCATTTCGCTATTGT
*
32136646 TTTGCTGTCATTTCGTTATT
1 TTTGCTGTCATTTCGCTATT
32136666 ATATTGCTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.10, C:0.14, G:0.17, T:0.60
Consensus pattern (22 bp):
TTTGCTGTCATTTCGCTATTGT
Found at i:32136672 original size:22 final size:22
Alignment explanation
Indices: 32136629--32136673 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
32136619 ACTGCTTTGT
* *
32136629 TGTCATTTCGCTATTGTTTTGC
1 TGTCATTTCGCTATTATATTGC
*
32136651 TGTCATTTCGTTATTATATTGC
1 TGTCATTTCGCTATTATATTGC
32136673 T
1 T
32136674 ACTATTTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.13, C:0.16, G:0.16, T:0.56
Consensus pattern (22 bp):
TGTCATTTCGCTATTATATTGC
Found at i:32138012 original size:14 final size:14
Alignment explanation
Indices: 32137993--32138027 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
32137983 TGTTTCATTG
32137993 AAAATGACTTCTAA
1 AAAATGACTTCTAA
* *
32138007 AAAATGACTTTTGA
1 AAAATGACTTCTAA
32138021 AAAATGA
1 AAAATGA
32138028 TTTATTTTCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.51, C:0.09, G:0.11, T:0.29
Consensus pattern (14 bp):
AAAATGACTTCTAA
Found at i:32139172 original size:11 final size:11
Alignment explanation
Indices: 32139134--32139172 Score: 53
Period size: 12 Copynumber: 3.5 Consensus size: 11
32139124 TTAATTTTAC
32139134 TTTTAAAAA-A
1 TTTTAAAAATA
32139144 TTTTAAAAATTA
1 TTTTAAAAA-TA
32139156 TTTTAAAAATA
1 TTTTAAAAATA
*
32139167 TATTAA
1 TTTTAA
32139173 TTAATTTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
10 9 0.35
11 7 0.27
12 10 0.38
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (11 bp):
TTTTAAAAATA
Found at i:32139718 original size:31 final size:31
Alignment explanation
Indices: 32139683--32139742 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
32139673 ATTGTTTAAT
*
32139683 TGAGTTGAGACCCGATTGAAAGATAATATTA
1 TGAGTTGAGACCCGATTAAAAGATAATATTA
* *
32139714 TGAGTTGAGACTCGATTAAAAGGTAATAT
1 TGAGTTGAGACCCGATTAAAAGATAATAT
32139743 CAATATTTTG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.30
Consensus pattern (31 bp):
TGAGTTGAGACCCGATTAAAAGATAATATTA
Found at i:32144734 original size:21 final size:21
Alignment explanation
Indices: 32144708--32144751 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
32144698 AGACGAGCAA
* *
32144708 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
32144729 TACTCCAAAACAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
32144750 TA
1 TA
32144752 ACAGCCCAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.30, C:0.20, G:0.30, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:32147288 original size:4 final size:4
Alignment explanation
Indices: 32147279--32147307 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
32147269 AGCAAACGTG
32147279 AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
32147308 TAGAAAAGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:32152767 original size:20 final size:20
Alignment explanation
Indices: 32152726--32152766 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
32152716 ATTCGGTTTA
*
32152726 TTTAAACAAATTTAATTGTT
1 TTTAAACAAATTGAATTGTT
32152746 TTTAAA-AAATTGAATT-TT
1 TTTAAACAAATTGAATTGTT
32152764 TTT
1 TTT
32152767 TCAAATTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 5 0.25
19 9 0.45
20 6 0.30
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.54
Consensus pattern (20 bp):
TTTAAACAAATTGAATTGTT
Found at i:32159646 original size:96 final size:96
Alignment explanation
Indices: 32159546--32159724 Score: 229
Period size: 96 Copynumber: 1.9 Consensus size: 96
32159536 AAAAGAAACA
*
32159546 AAGAAAACAA-T-TATACCGCAAGCTACAAGGATGATTAAGCATCATCA-GAACATACTAAACTT
1 AAGAAAACAAGTATATACCCCAAGC--CAAGGATGATTAAGCATCAT-ATGAACATACTAAACTT
32159608 AGTTAACAAACACAATCAAGAAGCTTAAGTGACG
63 AGTTAACAAACACAATCAAGAAGCTTAAGTGACG
** * ** * * *
32159642 AAGAAAACAAGTATATACCCCAAGCCACTGATTATTTTGCTTCATATGAGCATGCTAAACTTAGT
1 AAGAAAACAAGTATATACCCCAAGCCAAGGATGATTAAGCATCATATGAACATACTAAACTTAGT
32159707 TAACAAACACAATCAAGA
66 TAACAAACACAATCAAGA
32159725 CACTAAATAG
Statistics
Matches: 71, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
95 1 0.01
96 58 0.82
97 1 0.01
98 11 0.15
ACGTcount: A:0.45, C:0.20, G:0.13, T:0.22
Consensus pattern (96 bp):
AAGAAAACAAGTATATACCCCAAGCCAAGGATGATTAAGCATCATATGAACATACTAAACTTAGT
TAACAAACACAATCAAGAAGCTTAAGTGACG
Found at i:32160299 original size:4 final size:4
Alignment explanation
Indices: 32160290--32160335 Score: 57
Period size: 4 Copynumber: 12.8 Consensus size: 4
32160280 TAAAAAAGAA
32160290 AAAG AAAG AAA- AAA- AAAG AAAG -AAG AAAG -AAG AAAG -AAG AAAG
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG
32160333 AAA
1 AAA
32160336 TATGTGAATA
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
3 15 0.39
4 23 0.61
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:32160299 original size:10 final size:10
Alignment explanation
Indices: 32160284--32160331 Score: 62
Period size: 10 Copynumber: 4.7 Consensus size: 10
32160274 TAAAATTAAA
32160284 AAAGAAAAAG
1 AAAGAAAAAG
*
32160294 AAAGAAAAAA
1 AAAGAAAAAG
32160304 AAAGAAAGAAG
1 AAAGAAA-AAG
32160315 AAAGAAGAAAG
1 AAAGAA-AAAG
32160326 -AAGAAA
1 AAAGAAA
32160332 GAAATATGTG
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
9 1 0.03
10 21 0.62
11 11 0.32
12 1 0.03
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (10 bp):
AAAGAAAAAG
Found at i:32160315 original size:21 final size:21
Alignment explanation
Indices: 32160281--32160334 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
32160271 CGCTAAAATT
32160281 AAAAAAGAAA-AAGAAAGAAA
1 AAAAAAGAAAGAAGAAAGAAA
*
32160301 AAAAAAGAAAGAAGAAAGAAG
1 AAAAAAGAAAGAAGAAAGAAA
*
32160322 AAAGAAGAAAGAA
1 AAAAAAGAAAGAA
32160335 ATATGTGAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 10 0.32
21 21 0.68
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (21 bp):
AAAAAAGAAAGAAGAAAGAAA
Found at i:32160332 original size:7 final size:7
Alignment explanation
Indices: 32160285--32160334 Score: 75
Period size: 7 Copynumber: 7.3 Consensus size: 7
32160275 AAAATTAAAA
32160285 AAGAAA-
1 AAGAAAG
32160291 AAGAAAG
1 AAGAAAG
* *
32160298 AAAAAAA
1 AAGAAAG
32160305 AAGAAAG
1 AAGAAAG
32160312 AAGAAAG
1 AAGAAAG
32160319 AAGAAAG
1 AAGAAAG
32160326 AAGAAAG
1 AAGAAAG
32160333 AA
1 AA
32160335 ATATGTGAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
6 6 0.15
7 33 0.85
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (7 bp):
AAGAAAG
Found at i:32164661 original size:3 final size:3
Alignment explanation
Indices: 32164653--32164684 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
32164643 TACCTTTGAT
32164653 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AG
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AG
32164685 GCCTGGATCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:32175636 original size:98 final size:98
Alignment explanation
Indices: 32175431--32175638 Score: 344
Period size: 98 Copynumber: 2.1 Consensus size: 98
32175421 ATATTATTTT
* *
32175431 AAAATTTAAAATTTAATAATTTTGTATATTTTTATTTATTGAAATTTTTTATATAATTATCTTAA
1 AAAATTTAATATTTAATAATTTTGTATATTTTTATTTATTGAAATTTTTTATATAATCATCTTAA
* *
32175496 TATTATTTTAATGTTCACATTAGAGTAGTATTA
66 CATTATTTTAATGTTCACATTAGAGTAATATTA
* *
32175529 AAAATTTAATATTTAATACTTTTGTATTTTTTTATTTATTGAAATTTTTTATATAATCATCTTAA
1 AAAATTTAATATTTAATAATTTTGTATATTTTTATTTATTGAAATTTTTTATATAATCATCTTAA
32175594 CATTATTTTAATGTTCACATTAGAGTAATATTA
66 CATTATTTTAATGTTCACATTAGAGTAATATTA
* *
32175627 TATATTTAATAT
1 AAAATTTAATAT
32175639 ATGTTTATTT
Statistics
Matches: 102, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
98 102 1.00
ACGTcount: A:0.37, C:0.04, G:0.05, T:0.53
Consensus pattern (98 bp):
AAAATTTAATATTTAATAATTTTGTATATTTTTATTTATTGAAATTTTTTATATAATCATCTTAA
CATTATTTTAATGTTCACATTAGAGTAATATTA
Found at i:32177506 original size:7 final size:7
Alignment explanation
Indices: 32177494--32177520 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
32177484 TTATATCTAA
32177494 ATAAAAT
1 ATAAAAT
32177501 ATAAAAT
1 ATAAAAT
32177508 ATAAAAT
1 ATAAAAT
32177515 ATAAAA
1 ATAAAA
32177521 CTTAATCCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (7 bp):
ATAAAAT
Found at i:32187729 original size:11 final size:11
Alignment explanation
Indices: 32187713--32187737 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
32187703 ACATTAGCTC
32187713 CAATAATTGTT
1 CAATAATTGTT
32187724 CAATAATTGTT
1 CAATAATTGTT
32187735 CAA
1 CAA
32187738 AATATAAGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.12, G:0.08, T:0.40
Consensus pattern (11 bp):
CAATAATTGTT
Found at i:32188238 original size:23 final size:23
Alignment explanation
Indices: 32188207--32189056 Score: 637
Period size: 23 Copynumber: 37.1 Consensus size: 23
32188197 AAATAAGTAC
* *
32188207 TTAAACACTTCAATTTGCAACAT
1 TTAAACACTTCAATTTACAGCAT
*
32188230 TTAAGCACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTACAGCAT
* *
32188253 TTAAACACTTGAATTTGCAGCAT
1 TTAAACACTTCAATTTACAGCAT
* *
32188276 TCAAACACTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTACAGCA-T
32188300 TT-AACACTTCAATTTACAGCACT
1 TTAAACACTTCAATTTACAGCA-T
* **
32188323 TT-AACA-TCTCAATTAACAATAT
1 TTAAACACT-TCAATTTACAGCAT
* * *
32188345 TTATACACCTCAA-TTACAGTGA-
1 TTAAACACTTCAATTTACAG-CAT
* * * *
32188367 TAAAACA-TCTCAATGTCCAGCAA
1 TTAAACACT-TCAATTTACAGCAT
* * * * *
32188390 CTAAACACTTAAATTTGCAGTAC
1 TTAAACACTTCAATTTACAGCAT
* * *
32188413 TTAAGCACTTCAATTTGCAACAT
1 TTAAACACTTCAATTTACAGCAT
32188436 TTAAACACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTACAGCAT
* * *
32188459 TCAAACAGTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTACAGCA-T
32188483 TT-AACACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTACAGCAT
* *
32188505 TTAAGCACTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTACAGCA-T
* * *
32188529 TT-TACA-TCTCAATTAACAACAT
1 TTAAACACT-TCAATTTACAGCAT
* *
32188551 TTATACACCTCAA-TTACAGCGA-
1 TTAAACACTTCAATTTACAGC-AT
* * * *
32188573 TAAAACA-TCTCAATGTCCAGCAA
1 TTAAACACT-TCAATTTACAGCAT
* * * *
32188596 CTAAACACTTCAATTTGCAGTAC
1 TTAAACACTTCAATTTACAGCAT
* *
32188619 TTAAACACTTCAATTTGCAACAT
1 TTAAACACTTCAATTTACAGCAT
*
32188642 TTAAGCACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTACAGCAT
*
32188665 TTAAACA-TTTAATTTTACAGCAT
1 TTAAACACTTCAA-TTTACAGCAT
* *
32188688 TCAAACACTTCAATTTGCAGCAGT
1 TTAAACACTTCAATTTACAGCA-T
32188712 TT-AACACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTACAGCAT
* *
32188734 TAAAACACTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTACAGCA-T
* * *
32188758 TT-AACACCTCAATTAACAACAT
1 TTAAACACTTCAATTTACAGCAT
* * *
32188780 TTATACACCTCAA-TTACAACGA-
1 TTAAACACTTCAATTTACAGC-AT
* * * *
32188802 TAAAACA-TCTCAATGTCCAGCAA
1 TTAAACACT-TCAATTTACAGCAT
* * * *
32188825 CTAAACACTTCAATTTGCAGTAC
1 TTAAACACTTCAATTTACAGCAT
* * *
32188848 TTAAACAATTCAATTTGCAACAT
1 TTAAACACTTCAATTTACAGCAT
32188871 TTAAACACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTACAGCAT
*
32188894 TTAAACACTTCAATTTACAGCAG
1 TTAAACACTTCAATTTACAGCAT
* *
32188917 TCAAACACTTCAATTTCCAGCACT
1 TTAAACACTTCAATTTACAGCA-T
* * *
32188941 TT-AACACCTCAATTAACAACAT
1 TTAAACACTTCAATTTACAGCAT
* *
32188963 TTATACACCTCAA-TTACAGCGA-
1 TTAAACACTTCAATTTACAGC-AT
* * *
32188985 TAAAACA-TCTCAATTTCCAGCAA
1 TTAAACACT-TCAATTTACAGCAT
* *
32189008 TTAAACACTTCAATTTACAGTAC
1 TTAAACACTTCAATTTACAGCAT
* *
32189031 TTAAACACTTCAATTTGCAACAT
1 TTAAACACTTCAATTTACAGCAT
32189054 TTA
1 TTA
32189057 CTACTAATAT
Statistics
Matches: 655, Mismatches: 134, Indels: 76
0.76 0.15 0.09
Matches are distributed among these distances:
22 83 0.13
23 552 0.84
24 20 0.03
ACGTcount: A:0.38, C:0.24, G:0.07, T:0.32
Consensus pattern (23 bp):
TTAAACACTTCAATTTACAGCAT
Found at i:32188496 original size:137 final size:138
Alignment explanation
Indices: 32188254--32188501 Score: 319
Period size: 137 Copynumber: 1.8 Consensus size: 138
32188244 TTACAGCATT
* *
32188254 TAAACACTTGAATTTGCAGCATTCAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAG
1 TAAACACTTAAATTTGCAGCATTCAAACACTTCAATTTGCAACACTTTAACACTTCAATTTACAG
* *
32188319 CACTTTAACATCTCAATTAACAATATTTATACACCTCAA-TTACAGTGATAAAACATCTCAATGT
66 CACTTAAACATCTCAATTAACAACATTTATACACCTCAATTTACAGTGATAAAACATCTCAATGT
32188383 CCAGCAAC
131 CCAGCAAC
* *
32188391 TAAACACTTAAATTTGCAGTACTT-AAGCACTTCAATTTGCAACA-TTTAAACACTTCAATTTAC
1 TAAACACTTAAATTTGCAGCA-TTCAAACACTTCAATTTGCAACACTTT-AACACTTCAATTTAC
** * *
32188454 AGCA-TTCAAACAGT-TCAATTTGCAGCACTTTA-ACACTTCAATTTACAG
64 AGCACTT-AAACA-TCTCAATTAACAACA-TTTATACACCTCAATTTACAG
32188502 CATTTAAGCA
Statistics
Matches: 95, Mismatches: 10, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
136 5 0.05
137 77 0.81
138 13 0.14
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.32
Consensus pattern (138 bp):
TAAACACTTAAATTTGCAGCATTCAAACACTTCAATTTGCAACACTTTAACACTTCAATTTACAG
CACTTAAACATCTCAATTAACAACATTTATACACCTCAATTTACAGTGATAAAACATCTCAATGT
CCAGCAAC
Found at i:32188556 original size:206 final size:206
Alignment explanation
Indices: 32188202--32189056 Score: 1111
Period size: 206 Copynumber: 4.2 Consensus size: 206
32188192 ACCCAAAATA
* *
32188202 AGTACTTAAACACTTCAATTTGCAACATTTAAGCACTTCAATTTACAGCATTTAAACACTTGAAT
1 AGTACTTAAACACTTCAATTTGCAACATTTAAACACTTCAATTTACAGCATTTAAACACTTCAAT
* *
32188267 TTGCAGCATTCAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAGCACTTTAACATCT
66 TTACAGCATTCAAACACTTCAATTTACAGCACTTTAACACTTCAATTTACAGCACTTTAACATCT
* *
32188332 CAATTAACAATATTTATACACCTCAATTACAGTGATAAAACATCTCAATGTCCAGCAACTAAACA
131 CAATTAACAACATTTATACACCTCAATTACAGCGATAAAACATCTCAATGTCCAGCAACTAAACA
*
32188397 CTTAAATTTGC
196 CTTCAATTTGC
* * *
32188408 AGTACTTAAGCACTTCAATTTGCAACATTTAAACACTTCAATTTACAGCATTCAAACAGTTCAAT
1 AGTACTTAAACACTTCAATTTGCAACATTTAAACACTTCAATTTACAGCATTTAAACACTTCAAT
* * * *
32188473 TTGCAGCACTT-TAACACTTCAATTTACAGCA-TTTAAGCACTTCAATTTGCAGCACTTTTACAT
66 TTACAGCA-TTCAAACACTTCAATTTACAGCACTTTAA-CACTTCAATTTACAGCACTTTAACAT
32188536 CTCAATTAACAACATTTATACACCTCAATTACAGCGATAAAACATCTCAATGTCCAGCAACTAAA
129 CTCAATTAACAACATTTATACACCTCAATTACAGCGATAAAACATCTCAATGTCCAGCAACTAAA
32188601 CACTTCAATTTGC
194 CACTTCAATTTGC
* *
32188614 AGTACTTAAACACTTCAATTTGCAACATTTAAGCACTTCAATTTACAGCATTTAAACA-TTTAAT
1 AGTACTTAAACACTTCAATTTGCAACATTTAAACACTTCAATTTACAGCATTTAAACACTTCAA-
* * *
32188678 TTTACAGCATTCAAACACTTCAATTTGCAGCAGTTTAACACTTCAATTTACAGCA-TTAAAACA-
65 TTTACAGCATTCAAACACTTCAATTTACAGCACTTTAACACTTCAATTTACAGCACTT-TAACAT
** * * * * * * * *
32188741 CTTCAATTTGCAGCACTTTA-ACACCTCAATTAACAAC-ATTTATACACCTCAAT-TACAACGA-
129 C-TCAATTAACAACA-TTTATACACCTCAATT-ACAGCGA-TAAAACATCTCAATGTCCAGCAAC
* *
32188802 TAAA-ACATCTCAATGTCC
190 TAAACAC-T-TCAATTTGC
* ** * * * *
32188820 AGCAAC-TAAACACTTCAATTTGCAGTACTTAAACAATTCAATTTGCAACATTTAAACACTTCAA
1 AG-TACTTAAACACTTCAATTTGCAACATTTAAACACTTCAATTTACAGCATTTAAACACTTCAA
* * ** * *
32188884 TTTACAGCATTTAAACACTTCAATTTACAGCAGTCAAACACTTCAATTTCCAGCACTTTAACACC
65 TTTACAGCATTCAAACACTTCAATTTACAGCACTTTAACACTTCAATTTACAGCACTTTAACATC
* *
32188949 TCAATTAACAACATTTATACACCTCAATTACAGCGATAAAACATCTCAATTTCCAGCAATTAAAC
130 TCAATTAACAACATTTATACACCTCAATTACAGCGATAAAACATCTCAATGTCCAGCAACTAAAC
*
32189014 ACTTCAATTTAC
195 ACTTCAATTTGC
32189026 AGTACTTAAACACTTCAATTTGCAACATTTA
1 AGTACTTAAACACTTCAATTTGCAACATTTA
32189057 CTACTAATAT
Statistics
Matches: 562, Mismatches: 65, Indels: 44
0.84 0.10 0.07
Matches are distributed among these distances:
204 2 0.00
205 40 0.07
206 478 0.85
207 40 0.07
208 2 0.00
ACGTcount: A:0.38, C:0.24, G:0.07, T:0.32
Consensus pattern (206 bp):
AGTACTTAAACACTTCAATTTGCAACATTTAAACACTTCAATTTACAGCATTTAAACACTTCAAT
TTACAGCATTCAAACACTTCAATTTACAGCACTTTAACACTTCAATTTACAGCACTTTAACATCT
CAATTAACAACATTTATACACCTCAATTACAGCGATAAAACATCTCAATGTCCAGCAACTAAACA
CTTCAATTTGC
Found at i:32188626 original size:229 final size:227
Alignment explanation
Indices: 32188207--32188977 Score: 991
Period size: 229 Copynumber: 3.4 Consensus size: 227
32188197 AAATAAGTAC
* * * * * * *
32188207 TTAAACACTTCAATTTGCAACATTTAAGCACTTCAATTTACAGCA-TTTAAACACTTGAATTTGC
1 TTAAACACTTCAATTTACAGCATTCAAACACTTCAATTTGCAGCACTTT-AACACTTCAATTTAC
* * * *
32188271 AGCATTCAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAGCACTTTA-ACATCTCAA
65 AGCATTTAAACACTTCAATTTGCAGCACTTTAACAC-TCAATTAACAACA-TTTATACACCTCAA
* * * * ** * * *
32188335 TTA-ACAATATTTATACACCTCAAT-TACAGTGA-TAAA-ACATCTCAATGTCCAGCAAC-TAAA
128 TTACACGATA---AAACATCTCAATGTCCAGCAACTAAACAC-T-TCAATTTGCAG-TACTTAAA
* ** * * *
32188395 CACTTAAATTTGCAGTACTTAAGCACTTCAATTTGCAACAT
187 CACTTCAATTTGCAACATTTAAGCACTTCAATTTACAGCAT
*
32188436 TTAAACACTTCAATTTACAGCATTCAAACAGTTCAATTTGCAGCACTTTAACACTTCAATTTACA
1 TTAAACACTTCAATTTACAGCATTCAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACA
* *
32188501 GCATTTAAGCACTTCAATTTGCAGCACTTTTACATCTCAATTAACAACATTTATACACCTCAATT
66 GCATTTAAACACTTCAATTTGCAGCACTTTAACA-CTCAATTAACAACATTTATACACCTCAATT
32188566 ACAGCGATAAAACATCTCAATGTCCAGCAACTAAACACTTCAATTTGCAGTACTTAAACACTTCA
130 ACA-CGATAAAACATCTCAATGTCCAGCAACTAAACACTTCAATTTGCAGTACTTAAACACTTCA
32188631 ATTTGCAACATTTAAGCACTTCAATTTACAGCAT
194 ATTTGCAACATTTAAGCACTTCAATTTACAGCAT
* *
32188665 TTAAACA-TTTAATTTTACAGCATTCAAACACTTCAATTTGCAGCAGTTTAACACTTCAATTTAC
1 TTAAACACTTCAA-TTTACAGCATTCAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTAC
*
32188729 AGCATTAAAACACTTCAATTTGCAGCACTTTAACACCTCAATTAACAACATTTATACACCTCAAT
65 AGCATTTAAACACTTCAATTTGCAGCACTTTAACA-CTCAATTAACAACATTTATACACCTCAAT
*
32188794 TACAACGATAAAACATCTCAATGTCCAGCAACTAAACACTTCAATTTGCAGTACTTAAACAATTC
129 TAC-ACGATAAAACATCTCAATGTCCAGCAACTAAACACTTCAATTTGCAGTACTTAAACACTTC
*
32188859 AATTTGCAACATTTAAACACTTCAATTTACAGCAT
193 AATTTGCAACATTTAAGCACTTCAATTTACAGCAT
* * * *
32188894 TTAAACACTTCAATTTACAGCAGTCAAACACTTCAATTTCCAGCACTTTAACACCTCAATTAACA
1 TTAAACACTTCAATTTACAGCATTCAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACA
* * *
32188959 ACATTTATACACCTCAATT
66 GCATTTAAACACTTCAATT
32188978 ACAGCGATAA
Statistics
Matches: 482, Mismatches: 48, Indels: 24
0.87 0.09 0.04
Matches are distributed among these distances:
228 20 0.04
229 441 0.91
230 15 0.03
231 6 0.01
ACGTcount: A:0.38, C:0.24, G:0.07, T:0.32
Consensus pattern (227 bp):
TTAAACACTTCAATTTACAGCATTCAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACA
GCATTTAAACACTTCAATTTGCAGCACTTTAACACTCAATTAACAACATTTATACACCTCAATTA
CACGATAAAACATCTCAATGTCCAGCAACTAAACACTTCAATTTGCAGTACTTAAACACTTCAAT
TTGCAACATTTAAGCACTTCAATTTACAGCAT
Found at i:32188955 original size:183 final size:183
Alignment explanation
Indices: 32188647--32189056 Score: 653
Period size: 183 Copynumber: 2.2 Consensus size: 183
32188637 AACATTTAAG
* * * * * * *
32188647 CACTTCAATTTACAGCATTTAAAC-ATTTAATTTTACAGCATTCAAACACTTCAATTTGCAGCAG
1 CACTTCAATTTACAGTACTTAAACAATTCAA-TTTGCAACATTTAAACACTTCAATTTACAGCAG
* *
32188711 TTTAACACTTCAATTTACAGCATTAAAACACTTCAATTTGCAGCACTTTAACACCTCAATTAACA
65 TTTAACACTTCAATTTACAGCAGTAAAACACTTCAATTTCCAGCACTTTAACACCTCAATTAACA
32188776 ACATTTATACACCTCAATTACAACGATAAAACATCTCAATGTCCAGCAACTAAA
130 ACATTTATACACCTCAATTACAACGATAAAACATCTCAATGTCCAGCAACTAAA
*
32188830 CACTTCAATTTGCAGTACTTAAACAATTCAATTTGCAACATTTAAACACTTCAATTTACAGCA-T
1 CACTTCAATTTACAGTACTTAAACAATTCAATTTGCAACATTTAAACACTTCAATTTACAGCAGT
*
32188894 TTAAACACTTCAATTTACAGCAGTCAAACACTTCAATTTCCAGCACTTTAACACCTCAATTAACA
66 TT-AACACTTCAATTTACAGCAGTAAAACACTTCAATTTCCAGCACTTTAACACCTCAATTAACA
* * *
32188959 ACATTTATACACCTCAATTACAGCGATAAAACATCTCAATTTCCAGCAATTAAA
130 ACATTTATACACCTCAATTACAACGATAAAACATCTCAATGTCCAGCAACTAAA
*
32189013 CACTTCAATTTACAGTACTTAAACACTTCAATTTGCAACATTTA
1 CACTTCAATTTACAGTACTTAAACAATTCAATTTGCAACATTTA
32189057 CTACTAATAT
Statistics
Matches: 209, Mismatches: 16, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
182 3 0.01
183 201 0.96
184 5 0.02
ACGTcount: A:0.39, C:0.24, G:0.06, T:0.31
Consensus pattern (183 bp):
CACTTCAATTTACAGTACTTAAACAATTCAATTTGCAACATTTAAACACTTCAATTTACAGCAGT
TTAACACTTCAATTTACAGCAGTAAAACACTTCAATTTCCAGCACTTTAACACCTCAATTAACAA
CATTTATACACCTCAATTACAACGATAAAACATCTCAATGTCCAGCAACTAAA
Found at i:32190016 original size:23 final size:23
Alignment explanation
Indices: 32189982--32190197 Score: 174
Period size: 23 Copynumber: 9.4 Consensus size: 23
32189972 TCTTGTATAA
*
32189982 CATTTAAGCACTTCAATTTACAG
1 CATTTAAACACTTCAATTTACAG
* *
32190005 CATTTAAACACTTCATTTTGCAG
1 CATTTAAACACTTCAATTTACAG
* * *
32190028 TACTTT-AACA-TCTCAATTAACAA
1 CA-TTTAAACACT-TCAATTTACAG
* *
32190051 CATTTATACAAC-TCAA-TTATAG
1 CATTTAAAC-ACTTCAATTTACAG
* *
32190073 CGA-TAAAACA-TCTCAATTTCCAG
1 C-ATTTAAACACT-TCAATTTACAG
** *
32190096 CAACTAAACACTTCAATTTGCAG
1 CATTTAAACACTTCAATTTACAG
* * *
32190119 TACTTAAACACTTCAATTTACAA
1 CATTTAAACACTTCAATTTACAG
* *
32190142 CATTTAAACGCTTCAATTTATAG
1 CATTTAAACACTTCAATTTACAG
*
32190165 CATTTAAACACTTCAATTTGCAG
1 CATTTAAACACTTCAATTTACAG
32190188 CATTTAAACA
1 CATTTAAACA
32190198 ACAACAGCCA
Statistics
Matches: 149, Mismatches: 33, Indels: 22
0.73 0.16 0.11
Matches are distributed among these distances:
21 1 0.01
22 17 0.11
23 126 0.85
24 5 0.03
ACGTcount: A:0.38, C:0.22, G:0.06, T:0.34
Consensus pattern (23 bp):
CATTTAAACACTTCAATTTACAG
Found at i:32190158 original size:91 final size:92
Alignment explanation
Indices: 32189994--32190165 Score: 233
Period size: 91 Copynumber: 1.9 Consensus size: 92
32189984 TTTAAGCACT
** * * *
32189994 TCAATTTACAGCATTTAAACACTTCATTTTGCAGTACTTTAACATCTCAATTAACAACATTTATA
1 TCAATTTACAGCAACTAAACACTTCAATTTGCAGTACTTAAACATCTCAATTAACAACATTTAAA
32190059 CAACTCAA-TTATAGCGATAAAACATC
66 CAACTCAATTTATAGCGATAAAACATC
* *
32190085 TCAATTTCCAGCAACTAAACACTTCAATTTGCAGTACTTAAACA-CTTCAATTTACAACATTTAA
1 TCAATTTACAGCAACTAAACACTTCAATTTGCAGTACTTAAACATC-TCAATTAACAACATTTAA
*
32190149 AC-GCTTCAATTTATAGC
65 ACAAC-TCAATTTATAGC
32190166 ATTTAAACAC
Statistics
Matches: 70, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
90 2 0.03
91 61 0.87
92 7 0.10
ACGTcount: A:0.38, C:0.22, G:0.06, T:0.34
Consensus pattern (92 bp):
TCAATTTACAGCAACTAAACACTTCAATTTGCAGTACTTAAACATCTCAATTAACAACATTTAAA
CAACTCAATTTATAGCGATAAAACATC
Found at i:32193699 original size:8 final size:8
Alignment explanation
Indices: 32193688--32193739 Score: 74
Period size: 8 Copynumber: 6.9 Consensus size: 8
32193678 ATATTAAATA
32193688 TTAAATTT
1 TTAAATTT
32193696 TTAAATTT
1 TTAAATTT
*
32193704 TT-TATTT
1 TTAAATTT
32193711 TTAAATTT
1 TTAAATTT
32193719 TTAAATTT
1 TTAAATTT
32193727 TT--ATTT
1 TTAAATTT
32193733 TTAAATT
1 TTAAATT
32193740 AAATGAAAAC
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
6 6 0.15
7 6 0.15
8 27 0.69
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (8 bp):
TTAAATTT
Found at i:32193699 original size:15 final size:15
Alignment explanation
Indices: 32193681--32193739 Score: 66
Period size: 15 Copynumber: 3.9 Consensus size: 15
32193671 GACTAAAATA
*
32193681 TTAAATATTAAATTT
1 TTAAATTTTAAATTT
**
32193696 TTAAATTTTTTATTT
1 TTAAATTTTAAATTT
32193711 TTAAATTTTTAAATTT
1 TTAAA-TTTTAAATTT
*
32193727 TT-ATTTTTAAATT
1 TTAAATTTTAAATT
32193740 AAATGAAAAC
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
14 9 0.24
15 18 0.49
16 10 0.27
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (15 bp):
TTAAATTTTAAATTT
Found at i:32193724 original size:23 final size:22
Alignment explanation
Indices: 32193688--32193739 Score: 95
Period size: 22 Copynumber: 2.3 Consensus size: 22
32193678 ATATTAAATA
32193688 TTAAATTTTTAAATTTTTTATTT
1 TTAAATTTTTAAA-TTTTTATTT
32193711 TTAAATTTTTAAATTTTTATTT
1 TTAAATTTTTAAATTTTTATTT
32193733 TTAAATT
1 TTAAATT
32193740 AAATGAAAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 16 0.55
23 13 0.45
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (22 bp):
TTAAATTTTTAAATTTTTATTT
Found at i:32194899 original size:16 final size:16
Alignment explanation
Indices: 32194857--32194907 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
32194847 AGAGGTTATA
32194857 GTTTAGTG-TTTAGGG
1 GTTTAGTGTTTTAGGG
*
32194872 TTTTTTAG-GTTTTAGGG
1 --GTTTAGTGTTTTAGGG
*
32194889 GTTTAGTGTTTTACGG
1 GTTTAGTGTTTTAGGG
32194905 GTT
1 GTT
32194908 ATAAATCAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
15 5 0.17
16 12 0.41
17 12 0.41
ACGTcount: A:0.12, C:0.02, G:0.33, T:0.53
Consensus pattern (16 bp):
GTTTAGTGTTTTAGGG
Found at i:32195062 original size:41 final size:40
Alignment explanation
Indices: 32194962--32195096 Score: 173
Period size: 40 Copynumber: 3.4 Consensus size: 40
32194952 GTTATATGAC
* *
32194962 TTTTAGCGGCGTTTTATCGAAAGCGACGCTAATGCTCT-GG
1 TTTTAGCGGCGTTTTACCGAAAGCG-CGCTAATGCTCTAGT
* *
32195002 TTTTAGCGGCATTTGACCGAAAGCGCCGCTAATGCTCTAGT
1 TTTTAGCGGCGTTTTACCGAAAGCG-CGCTAATGCTCTAGT
* * *
32195043 TTTTAGCGGCGTTTTACCGAAAGCGCGCTATTGCTTTATT
1 TTTTAGCGGCGTTTTACCGAAAGCGCGCTAATGCTCTAGT
*
32195083 TTTTAGCGACGTTT
1 TTTTAGCGGCGTTT
32195097 GTGTTTTACA
Statistics
Matches: 83, Mismatches: 11, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
40 59 0.71
41 24 0.29
ACGTcount: A:0.19, C:0.21, G:0.24, T:0.36
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTACCGAAAGCGCGCTAATGCTCTAGT
Found at i:32195795 original size:19 final size:19
Alignment explanation
Indices: 32195755--32195795 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
32195745 TAAAATCATA
* *
32195755 CTAGAATCATATTTATAGG
1 CTAGAATCAAATTTACAGG
*
32195774 CTAGAATCAAATTTACATG
1 CTAGAATCAAATTTACAGG
32195793 CTA
1 CTA
32195796 TACCTAAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.39, C:0.15, G:0.12, T:0.34
Consensus pattern (19 bp):
CTAGAATCAAATTTACAGG
Found at i:32196422 original size:8 final size:9
Alignment explanation
Indices: 32196406--32196437 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
32196396 ATATTTAGTC
32196406 ATATAATAA
1 ATATAATAA
32196415 AT-TAAT-A
1 ATATAATAA
32196422 ATATAATAA
1 ATATAATAA
32196431 ATATAAT
1 ATATAAT
32196438 TTATTATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
7 3 0.14
8 8 0.38
9 10 0.48
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (9 bp):
ATATAATAA
Found at i:32196427 original size:16 final size:17
Alignment explanation
Indices: 32196406--32196437 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
32196396 ATATTTAGTC
32196406 ATATAATAAAT-TAATA
1 ATATAATAAATATAATA
32196422 ATATAATAAATATAAT
1 ATATAATAAATATAAT
32196438 TTATTATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
ATATAATAAATATAATA
Found at i:32196465 original size:20 final size:22
Alignment explanation
Indices: 32196411--32196466 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
32196401 TAGTCATATA
* * *
32196411 ATAAATTAATAATATAATAAAT
1 ATAATTTAATATTTTAATAAAT
*
32196433 ATAATTTATTATTTTAATAAAT
1 ATAATTTAATATTTTAATAAAT
32196455 -T-ATTTAATATTT
1 ATAATTTAATATTT
32196467 CAATTTTATT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
20 10 0.34
21 1 0.03
22 18 0.62
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
ATAATTTAATATTTTAATAAAT
Found at i:32196532 original size:46 final size:45
Alignment explanation
Indices: 32196482--32196587 Score: 110
Period size: 48 Copynumber: 2.3 Consensus size: 45
32196472 TTATTTTAAA
32196482 AATATAAATTTTA-AAT-AATA-TTATTCACATATTACTAAAAATATT
1 AATATAAATTTTATAATAAATATTTATT-ACA-ATTA-TAAAAATATT
* *
32196527 CAATATTAATATTTAATAATAAATATTTATTACAATTATAAATATATT
1 -AATA-TAA-ATTTTATAATAAATATTTATTACAATTATAAAAATATT
32196575 AATAATAAATTTT
1 AAT-ATAAATTTT
32196588 TTGTAGTATA
Statistics
Matches: 51, Mismatches: 3, Indels: 12
0.77 0.05 0.18
Matches are distributed among these distances:
46 8 0.16
47 9 0.18
48 15 0.29
49 7 0.14
50 7 0.14
51 5 0.10
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (45 bp):
AATATAAATTTTATAATAAATATTTATTACAATTATAAAAATATT
Found at i:32196584 original size:15 final size:15
Alignment explanation
Indices: 32196534--32196584 Score: 50
Period size: 19 Copynumber: 3.2 Consensus size: 15
32196524 ATTCAATATT
32196534 AATAT-TTAATAATA
1 AATATATTAATAATA
*
32196548 AATATTTATTACAATTATA
1 AATA--TATT--AATAATA
32196567 AATATATTAATAATA
1 AATATATTAATAATA
32196582 AAT
1 AAT
32196585 TTTTTGTAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
14 4 0.13
15 9 0.30
16 1 0.03
17 6 0.20
19 10 0.33
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (15 bp):
AATATATTAATAATA
Found at i:32201036 original size:14 final size:14
Alignment explanation
Indices: 32201001--32201040 Score: 53
Period size: 15 Copynumber: 2.8 Consensus size: 14
32200991 TTCATTTCAG
**
32201001 ATTATATTTTATCT
1 ATTATATTTTAAAT
32201015 ATTTATATTTTAAAT
1 A-TTATATTTTAAAT
32201030 ATTATATTTTA
1 ATTATATTTTA
32201041 GTAATTTACG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 11 0.48
15 12 0.52
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (14 bp):
ATTATATTTTAAAT
Found at i:32203209 original size:11 final size:11
Alignment explanation
Indices: 32203195--32203234 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
32203185 TGTTTTCTCT
32203195 CTATTTTACTA
1 CTATTTTACTA
32203206 CTATTTTACTA
1 CTATTTTACTA
* * *
32203217 TTATGTTGCTA
1 CTATTTTACTA
32203228 CTATTTT
1 CTATTTT
32203235 GTTGTTATAC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.23, C:0.15, G:0.05, T:0.57
Consensus pattern (11 bp):
CTATTTTACTA
Found at i:32203442 original size:11 final size:11
Alignment explanation
Indices: 32203426--32203456 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
32203416 TATATATATT
32203426 TAAAAATTATA
1 TAAAAATTATA
*
32203437 TAAAAATAATA
1 TAAAAATTATA
32203448 TAAAAATTA
1 TAAAAATTA
32203457 ATGTGGGCCG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
TAAAAATTATA
Found at i:32205360 original size:9 final size:8
Alignment explanation
Indices: 32205336--32205378 Score: 52
Period size: 8 Copynumber: 5.2 Consensus size: 8
32205326 AATACAATCT
32205336 AAAAT-AA
1 AAAATAAA
32205343 AAAATAAA
1 AAAATAAA
32205351 AAAATAAA
1 AAAATAAA
32205359 AAAATGAAGA
1 AAAAT-AA-A
*
32205369 AAAAGAAA
1 AAAATAAA
32205377 AA
1 AA
32205379 GAAAAAAACC
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
7 5 0.16
8 18 0.56
9 4 0.12
10 5 0.16
ACGTcount: A:0.84, C:0.00, G:0.07, T:0.09
Consensus pattern (8 bp):
AAAATAAA
Found at i:32205642 original size:9 final size:9
Alignment explanation
Indices: 32205624--32205662 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
32205614 CCTTTGTTCA
*
32205624 TTTTTCATT
1 TTTTTTATT
32205633 TTTTTTATT
1 TTTTTTATT
32205642 TTATTTTATT
1 TT-TTTTATT
*
32205652 TTCTTTATT
1 TTTTTTATT
32205661 TT
1 TT
32205663 ATATATATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
9 18 0.67
10 9 0.33
ACGTcount: A:0.13, C:0.05, G:0.00, T:0.82
Consensus pattern (9 bp):
TTTTTTATT
Found at i:32205658 original size:19 final size:20
Alignment explanation
Indices: 32205625--32205664 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
32205615 CTTTGTTCAT
*
32205625 TTTTCATTTTTTTTATTTTA
1 TTTTCATTTTCTTTATTTTA
32205645 TTTT-ATTTTCTTTATTTTA
1 TTTTCATTTTCTTTATTTTA
32205664 T
1 T
32205665 ATATATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 15 0.79
20 4 0.21
ACGTcount: A:0.15, C:0.05, G:0.00, T:0.80
Consensus pattern (20 bp):
TTTTCATTTTCTTTATTTTA
Found at i:32206579 original size:19 final size:19
Alignment explanation
Indices: 32206555--32206592 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
32206545 TTGAGATTGC
*
32206555 CAACCTATTTGCTTGAAAT
1 CAACCTATTTGCCTGAAAT
32206574 CAACCTATTTGCCTGAAAT
1 CAACCTATTTGCCTGAAAT
32206593 TATTCATTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.24, G:0.11, T:0.34
Consensus pattern (19 bp):
CAACCTATTTGCCTGAAAT
Found at i:32209335 original size:22 final size:20
Alignment explanation
Indices: 32209289--32209336 Score: 51
Period size: 22 Copynumber: 2.3 Consensus size: 20
32209279 TTATTATTTT
*
32209289 AAAATTTTTAATTATTAAAT
1 AAAATTTTTAATTATTAAAG
* *
32209309 TAAATTTTTATTATTTTTAAAG
1 AAAATTTTTA--ATTATTAAAG
32209331 AAAATT
1 AAAATT
32209337 AAAATATAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 9 0.41
22 13 0.59
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (20 bp):
AAAATTTTTAATTATTAAAG
Found at i:32213175 original size:46 final size:46
Alignment explanation
Indices: 32213115--32213388 Score: 460
Period size: 46 Copynumber: 6.0 Consensus size: 46
32213105 TTTGACATGA
* * * * * *
32213115 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* *
32213161 TGCCATGGTATCTTTCAACCATGGTCTTATACATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
32213207 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
32213253 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
32213299 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
32213345 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
32213389 AGAGCACACT
Statistics
Matches: 218, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
45 4 0.02
46 214 0.98
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:32223751 original size:25 final size:25
Alignment explanation
Indices: 32223723--32223780 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
32223713 AATAATGGAT
* *
32223723 ATGTTATTTTGATTTTGAAAATGAA
1 ATGTCATTTTGATTCTGAAAATGAA
* *
32223748 ATGTCATTTTGATTCTGAAAGTGAC
1 ATGTCATTTTGATTCTGAAAATGAA
32223773 ATGTCATT
1 ATGTCATT
32223781 CTAATTTGAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.31, C:0.07, G:0.17, T:0.45
Consensus pattern (25 bp):
ATGTCATTTTGATTCTGAAAATGAA
Found at i:32229084 original size:35 final size:35
Alignment explanation
Indices: 32229038--32229108 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
32229028 ATAAAAGAAA
32229038 GTTAGTGTGAAATATAATTTACTTTTTAGCATATT
1 GTTAGTGTGAAATATAATTTACTTTTTAGCATATT
32229073 GTTAGTGTGAAATATAATTTACTTTTTAGCATATT
1 GTTAGTGTGAAATATAATTTACTTTTTAGCATATT
32229108 G
1 G
32229109 AAAATTTTAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.31, C:0.06, G:0.15, T:0.48
Consensus pattern (35 bp):
GTTAGTGTGAAATATAATTTACTTTTTAGCATATT
Found at i:32236327 original size:29 final size:29
Alignment explanation
Indices: 32236285--32236342 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
32236275 ATTGAATACT
32236285 TACATAGAATGTGAATATTTTTGTAGGAG
1 TACATAGAATGTGAATATTTTTGTAGGAG
32236314 TACATAGAATGTGAATATTTTTGTAGGAG
1 TACATAGAATGTGAATATTTTTGTAGGAG
32236343 AATTAAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.34, C:0.03, G:0.24, T:0.38
Consensus pattern (29 bp):
TACATAGAATGTGAATATTTTTGTAGGAG
Found at i:32240369 original size:14 final size:14
Alignment explanation
Indices: 32240350--32240377 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
32240340 TAGTTGAAGG
32240350 AGCTTTTAGATGTT
1 AGCTTTTAGATGTT
32240364 AGCTTTTAGATGTT
1 AGCTTTTAGATGTT
32240378 GGATTAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.07, G:0.21, T:0.50
Consensus pattern (14 bp):
AGCTTTTAGATGTT
Found at i:32256577 original size:13 final size:13
Alignment explanation
Indices: 32256559--32256597 Score: 78
Period size: 13 Copynumber: 3.0 Consensus size: 13
32256549 AAGTAATCAA
32256559 ACACGGGCGTGTC
1 ACACGGGCGTGTC
32256572 ACACGGGCGTGTC
1 ACACGGGCGTGTC
32256585 ACACGGGCGTGTC
1 ACACGGGCGTGTC
32256598 CTTGTCGAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15
Consensus pattern (13 bp):
ACACGGGCGTGTC
Found at i:32258387 original size:18 final size:18
Alignment explanation
Indices: 32258364--32258418 Score: 73
Period size: 18 Copynumber: 3.2 Consensus size: 18
32258354 ACATATATTC
32258364 TTTCTTATATATTACTTG
1 TTTCTTATATATTACTTG
32258382 TTTCTTATATATATA-TT-
1 TTTCTTATATAT-TACTTG
32258399 TTTC--ATATATTACTTG
1 TTTCTTATATATTACTTG
32258415 TTTC
1 TTTC
32258419 AAATTTACTT
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
14 2 0.06
15 8 0.24
16 4 0.12
17 4 0.12
18 14 0.41
19 2 0.06
ACGTcount: A:0.24, C:0.11, G:0.04, T:0.62
Consensus pattern (18 bp):
TTTCTTATATATTACTTG
Found at i:32258412 original size:33 final size:34
Alignment explanation
Indices: 32258348--32258418 Score: 101
Period size: 33 Copynumber: 2.1 Consensus size: 34
32258338 TTATATTAAA
*
32258348 TTTCTTACATATATTCTTTCTTATATATTACTTG
1 TTTCTTACATATATTCTTTCTCATATATTACTTG
*
32258382 TTTCTTATATATATAT-TTT-TCATATATTACTTG
1 TTTCTTACATATAT-TCTTTCTCATATATTACTTG
32258415 TTTC
1 TTTC
32258419 AAATTTACTT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
33 17 0.50
34 16 0.47
35 1 0.03
ACGTcount: A:0.24, C:0.13, G:0.03, T:0.61
Consensus pattern (34 bp):
TTTCTTACATATATTCTTTCTCATATATTACTTG
Found at i:32258667 original size:26 final size:26
Alignment explanation
Indices: 32258638--32258714 Score: 75
Period size: 26 Copynumber: 3.0 Consensus size: 26
32258628 TATTCATTTT
* * *
32258638 TTATTTAATTTAATTTGCTTTGTATA
1 TTATTTATTTTAATTTGCTTTATACA
* * *
32258664 TTATTTGTTTTAAATTGTTTTATACA
1 TTATTTATTTTAATTTGCTTTATACA
*
32258690 TTATTCATTTTAATTTG-TTTCATAC
1 TTATTTATTTTAATTTGCTTT-ATAC
32258715 TAGTTACTTC
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
25 3 0.07
26 38 0.93
ACGTcount: A:0.26, C:0.06, G:0.06, T:0.61
Consensus pattern (26 bp):
TTATTTATTTTAATTTGCTTTATACA
Found at i:32267963 original size:20 final size:20
Alignment explanation
Indices: 32267940--32267988 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
32267930 GTTCGTATAC
32267940 ACGGGCGTGTGGGACATCAA
1 ACGGGCGTGTGGGACATCAA
* *
32267960 ACGGGCGTGTGGGATATCAC
1 ACGGGCGTGTGGGACATCAA
32267980 ACGGGCGTG
1 ACGGGCGTG
32267989 GGAGAAGTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.20, C:0.20, G:0.43, T:0.16
Consensus pattern (20 bp):
ACGGGCGTGTGGGACATCAA
Found at i:32268636 original size:32 final size:30
Alignment explanation
Indices: 32268600--32268678 Score: 81
Period size: 32 Copynumber: 2.5 Consensus size: 30
32268590 ATTTTCAGAA
*
32268600 ATTTTTATTTATTTATATATTTAGTAGT-TTTG
1 ATTTTTATTTA-TTAT-TATTCAGTA-TATTTG
*
32268632 ATTTTTATAGCTATTATTATTCAGTATATTTG
1 ATTTTTAT--TTATTATTATTCAGTATATTTG
32268664 ATTTTTATTT-TTATT
1 ATTTTTATTTATTATT
32268679 TGGTTTGTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
29 5 0.12
30 1 0.02
31 1 0.02
32 28 0.68
33 4 0.10
34 2 0.05
ACGTcount: A:0.25, C:0.03, G:0.08, T:0.65
Consensus pattern (30 bp):
ATTTTTATTTATTATTATTCAGTATATTTG
Found at i:32276523 original size:21 final size:23
Alignment explanation
Indices: 32276476--32276523 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 23
32276466 ATTTCAAGTG
* *
32276476 ATATTTTTTAATTTATTATATGT
1 ATATTTTTAAATATATTATATGT
32276499 -TATTTTTAAATATA-TATAT-T
1 ATATTTTTAAATATATTATATGT
32276519 ATATT
1 ATATT
32276524 AAGATTTCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 1 0.05
21 9 0.41
22 12 0.55
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.62
Consensus pattern (23 bp):
ATATTTTTAAATATATTATATGT
Found at i:32279474 original size:3 final size:3
Alignment explanation
Indices: 32279466--32279492 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
32279456 TTTTTGGGTT
32279466 GTG GTG GTG GTG GTG GTG GTG GTG GTG
1 GTG GTG GTG GTG GTG GTG GTG GTG GTG
32279493 CTTTCTTGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.67, T:0.33
Consensus pattern (3 bp):
GTG
Found at i:32280490 original size:17 final size:17
Alignment explanation
Indices: 32280468--32280500 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
32280458 TATGGGGTCA
32280468 GATAGTTTTGTTAAGCT
1 GATAGTTTTGTTAAGCT
32280485 GATAGTTTTGTTAAGC
1 GATAGTTTTGTTAAGC
32280501 CCTATATTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.06, G:0.24, T:0.45
Consensus pattern (17 bp):
GATAGTTTTGTTAAGCT
Found at i:32285045 original size:24 final size:27
Alignment explanation
Indices: 32284998--32285048 Score: 72
Period size: 24 Copynumber: 2.0 Consensus size: 27
32284988 TACTCTAGAC
32284998 CTAAATATATTTTAATTATAAATCTAA
1 CTAAATATATTTTAATTATAAATCTAA
*
32285025 CTAAAT-T-TTTTAA-TATTAATCTAA
1 CTAAATATATTTTAATTATAAATCTAA
32285049 TTATACTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 10 0.43
25 6 0.26
26 1 0.04
27 6 0.26
ACGTcount: A:0.45, C:0.08, G:0.00, T:0.47
Consensus pattern (27 bp):
CTAAATATATTTTAATTATAAATCTAA
Found at i:32285058 original size:24 final size:25
Alignment explanation
Indices: 32285007--32285059 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 25
32284997 CCTAAATATA
*
32285007 TTTTAATTATAAATCTAACTAAATT
1 TTTTAATTATAAATCTAACTAAACT
* * *
32285032 TTTTAA-TATTAATCTAATTATACT
1 TTTTAATTATAAATCTAACTAAACT
32285056 TTTT
1 TTTT
32285060 TTTTGAAACA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 18 0.75
25 6 0.25
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.55
Consensus pattern (25 bp):
TTTTAATTATAAATCTAACTAAACT
Found at i:32286173 original size:79 final size:79
Alignment explanation
Indices: 32286084--32286240 Score: 305
Period size: 79 Copynumber: 2.0 Consensus size: 79
32286074 TCGGCTTTGT
*
32286084 CCCTAGAGAATGAATGAATTGATGATAATTGTTTATGGGAATTAGCTTTGCCATGTTTATGTTAA
1 CCCTAGAGAATAAATGAATTGATGATAATTGTTTATGGGAATTAGCTTTGCCATGTTTATGTTAA
32286149 CAAGATGAGAAATC
66 CAAGATGAGAAATC
32286163 CCCTAGAGAATAAATGAATTGATGATAATTGTTTATGGGAATTAGCTTTGCCATGTTTATGTTAA
1 CCCTAGAGAATAAATGAATTGATGATAATTGTTTATGGGAATTAGCTTTGCCATGTTTATGTTAA
32286228 CAAGATGAGAAAT
66 CAAGATGAGAAAT
32286241 AAATTAAGAT
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
79 77 1.00
ACGTcount: A:0.35, C:0.10, G:0.21, T:0.34
Consensus pattern (79 bp):
CCCTAGAGAATAAATGAATTGATGATAATTGTTTATGGGAATTAGCTTTGCCATGTTTATGTTAA
CAAGATGAGAAATC
Found at i:32287097 original size:39 final size:39
Alignment explanation
Indices: 32287038--32288010 Score: 1847
Period size: 39 Copynumber: 24.9 Consensus size: 39
32287028 TGTGTGAGAT
* * *
32287038 TTATATCCGGGCTACGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
* * * *
32287077 TTATGTCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
* *
32287116 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
32287155 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
32287194 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
32287233 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
32287272 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
32287311 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
32287350 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
32287389 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
32287428 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
32287467 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
32287506 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
32287545 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
32287584 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
32287623 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
32287662 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
32287701 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
32287740 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
32287779 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
32287818 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
32287857 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
32287896 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
32287935 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
* *
32287974 TTATATCCGGGCTAAGTCCCGAAGGCATTTGTGTTGG
1 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGG
32288011 AAATGTGTGA
Statistics
Matches: 925, Mismatches: 9, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
39 925 1.00
ACGTcount: A:0.18, C:0.19, G:0.31, T:0.33
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
Found at i:32295753 original size:31 final size:31
Alignment explanation
Indices: 32295716--32295783 Score: 120
Period size: 31 Copynumber: 2.2 Consensus size: 31
32295706 CTGTTATGAT
32295716 ATATATATATATATGTGCATGATAATTGAGG
1 ATATATATATATATGTGCATGATAATTGAGG
*
32295747 ATATATATATATGTGTGCATGATAATTGAGG
1 ATATATATATATATGTGCATGATAATTGAGG
32295778 AT-TATA
1 ATATATA
32295784 ACCGGGCTAA
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
30 4 0.11
31 32 0.89
ACGTcount: A:0.38, C:0.03, G:0.19, T:0.40
Consensus pattern (31 bp):
ATATATATATATATGTGCATGATAATTGAGG
Found at i:32296009 original size:39 final size:39
Alignment explanation
Indices: 32295817--32296001 Score: 289
Period size: 39 Copynumber: 4.7 Consensus size: 39
32295807 TGTATGAGAT
32295817 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
32295856 TTATGTCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* ** *
32295895 TTATGTCTAGGCTAAGTCCCGAAGGTATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
32295934 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGTTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
32295973 TTATATCCGGGCTAAGTCCCGACGGCATT
1 TTATATCCGGGCTAAGTCCCGAAGGCATT
32296002 TGTGTTGGAA
Statistics
Matches: 134, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 134 1.00
ACGTcount: A:0.18, C:0.21, G:0.30, T:0.31
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:32298996 original size:10 final size:10
Alignment explanation
Indices: 32298981--32299053 Score: 53
Period size: 10 Copynumber: 7.2 Consensus size: 10
32298971 TAATATAGGG
32298981 AATAATATAT
1 AATAATATAT
32298991 AATAATATAT
1 AATAATATAT
* *
32299001 GAT-ATGTGAT
1 AATAATAT-AT
*
32299011 AA-AAAATAT
1 AATAATATAT
*
32299020 AAATAAAATAT
1 -AATAATATAT
32299031 AATGAA-ATAT
1 AAT-AATATAT
32299041 AATAATATGAT
1 AATAATAT-AT
32299052 AA
1 AA
32299054 CTATCATATA
Statistics
Matches: 51, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
9 7 0.14
10 31 0.61
11 13 0.25
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (10 bp):
AATAATATAT
Found at i:32299232 original size:13 final size:13
Alignment explanation
Indices: 32299207--32299240 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
32299197 TAAAATATAT
32299207 AATGTAT-AATAA
1 AATGTATAAATAA
*
32299219 AATTTATAAATAA
1 AATGTATAAATAA
32299232 AATGTATAA
1 AATGTATAA
32299241 TAATAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 6 0.32
13 13 0.68
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.35
Consensus pattern (13 bp):
AATGTATAAATAA
Found at i:32299242 original size:12 final size:12
Alignment explanation
Indices: 32299207--32299243 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
32299197 TAAAATATAT
32299207 AATGTATAATAA
1 AATGTATAATAA
*
32299219 AATTTATAAATAA
1 AATGTAT-AATAA
32299232 AATGTATAATAA
1 AATGTATAATAA
32299244 TAAAAATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.35
Consensus pattern (12 bp):
AATGTATAATAA
Found at i:32299252 original size:25 final size:24
Alignment explanation
Indices: 32299199--32299266 Score: 59
Period size: 25 Copynumber: 2.8 Consensus size: 24
32299189 ATATGTAGTA
*
32299199 AAAT-ATATAATGTATAATAAAAT
1 AAATAATAAAATGTATAATAAAAT
**
32299222 TTATAAATAAAATGTATAATAATAA-
1 AAAT-AATAAAATGTATAATAA-AAT
* *
32299247 AAATAATATAATGAATAATA
1 AAATAATAAAATGTATAATA
32299267 TTTAAATAAA
Statistics
Matches: 35, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
23 2 0.06
24 14 0.40
25 17 0.49
26 2 0.06
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (24 bp):
AAATAATAAAATGTATAATAAAAT
Found at i:32299263 original size:12 final size:12
Alignment explanation
Indices: 32299203--32299267 Score: 51
Period size: 12 Copynumber: 5.3 Consensus size: 12
32299193 GTAGTAAAAT
32299203 ATATAATGTATA
1 ATATAATGTATA
* *
32299215 ATAAAATTTATAA
1 ATATAATGTAT-A
*
32299228 ATAAAATGTATA
1 ATATAATGTATA
**
32299240 ATAATAA-AAATA
1 AT-ATAATGTATA
*
32299252 ATATAATGAATA
1 ATATAATGTATA
32299264 ATAT
1 ATAT
32299268 TTAAATAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
11 4 0.09
12 25 0.58
13 14 0.33
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (12 bp):
ATATAATGTATA
Found at i:32300137 original size:20 final size:20
Alignment explanation
Indices: 32300114--32300159 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
32300104 ATCTGTAAAA
32300114 CTGTGTTCTTTTTATTGAAT
1 CTGTGTTCTTTTTATTGAAT
32300134 CTGTGTTCTTTTTATTGAAT
1 CTGTGTTCTTTTTATTGAAT
32300154 CTGTGT
1 CTGTGT
32300160 ATATATTCCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.13, C:0.11, G:0.17, T:0.59
Consensus pattern (20 bp):
CTGTGTTCTTTTTATTGAAT
Found at i:32300943 original size:44 final size:44
Alignment explanation
Indices: 32300895--32301357 Score: 644
Period size: 44 Copynumber: 10.5 Consensus size: 44
32300885 ACTCCGGAAT
* *
32300895 GCCAAATCTATTATCCTT-GATCTGCTCTCTGACAATACAGAAAC
1 GCCAAATCTGTTAT-CTTCGATCTGCTCTCTGACAATACAGAGAC
* * *
32300939 GCCAAATCTGCTATTTTTGATCTGCTCTCTGACAATACAGAGAC
1 GCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGAC
* * * *
32300983 GCCAAATCAGCTATCTTCAATCTGCTCTCTGACAATACAGAGTC
1 GCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGAC
*
32301027 GCCAGATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGAC
1 GCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGAC
* *
32301071 GCCAAATCTGTCATCTTCGATCTGCTCTCT-ATCAATATAGAGAC
1 GCCAAATCTGTTATCTTCGATCTGCTCTCTGA-CAATACAGAGAC
* * *
32301115 ACCAAATCTGTTATCTTCGATCTTCTCTCT-ATCAATACAAAGAC
1 GCCAAATCTGTTATCTTCGATCTGCTCTCTGA-CAATACAGAGAC
32301159 GCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGAC
1 GCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGAC
* * * *
32301203 GCCAAATCTGTTCTCTTTGATCTGCTCTCTGACAATATACAGAC
1 GCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGAC
* * * *
32301247 ACCAAATCTGCTATCTTTGATCTGCTCTCTGACAGTACAGAGAC
1 GCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGAC
* *
32301291 GCCAAATATGTTCTCTTCGATCTGCTCTCTGACAATACAGAGAC
1 GCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGAC
*
32301335 ACCAAATCTGTTATCTTCGATCT
1 GCCAAATCTGTTATCTTCGATCT
32301358 ACATTGTCTC
Statistics
Matches: 372, Mismatches: 44, Indels: 6
0.88 0.10 0.01
Matches are distributed among these distances:
43 3 0.01
44 368 0.99
45 1 0.00
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (44 bp):
GCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGAC
Found at i:32313881 original size:35 final size:35
Alignment explanation
Indices: 32313835--32313905 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
32313825 ACTCACCTCC
32313835 TCTTTTCTGGCTTCCTACCTGGTGCACAGCTTCCA
1 TCTTTTCTGGCTTCCTACCTGGTGCACAGCTTCCA
*
32313870 TCTTTTCTGGCTTCCTACTTGGTGCACAGCTTCCA
1 TCTTTTCTGGCTTCCTACCTGGTGCACAGCTTCCA
32313905 T
1 T
32313906 TCACTTTAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.11, C:0.32, G:0.17, T:0.39
Consensus pattern (35 bp):
TCTTTTCTGGCTTCCTACCTGGTGCACAGCTTCCA
Found at i:32315317 original size:619 final size:619
Alignment explanation
Indices: 32314138--32315375 Score: 2476
Period size: 619 Copynumber: 2.0 Consensus size: 619
32314128 TTCACCAGCT
32314138 CTCCAATATGCACTCAAGGATCTAAACGTCTCGGCTAGGATTGCAGGCACAGGTATATTCTGTTT
1 CTCCAATATGCACTCAAGGATCTAAACGTCTCGGCTAGGATTGCAGGCACAGGTATATTCTGTTT
32314203 ACTAACTCGATCGAATAGATCTGCAACTGCCTCATCTATGTGCCCCATAGCTTTTGGGAAAATCA
66 ACTAACTCGATCGAATAGATCTGCAACTGCCTCATCTATGTGCCCCATAGCTTTTGGGAAAATCA
32314268 CCAATCCATACATACTTAACGCCAAGACATCAACCCTCTTCTTCACATCTGGGTGTGCCAATATC
131 CCAATCCATACATACTTAACGCCAAGACATCAACCCTCTTCTTCACATCTGGGTGTGCCAATATC
32314333 AAATCCCTCAAACTTGCCCACGGAATGCATTTGCTATCACCCTTTTGTTGGATTCGAGCTGTGGC
196 AAATCCCTCAAACTTGCCCACGGAATGCATTTGCTATCACCCTTTTGTTGGATTCGAGCTGTGGC
32314398 CCACTATTCACTCACCCCTATAATCATCATTAATTTCTTCAAGAAAATTGGGGGATTAGCAGCCC
261 CCACTATTCACTCACCCCTATAATCATCATTAATTTCTTCAAGAAAATTGGGGGATTAGCAGCCC
32314463 TAACATAAGCTTTGTTACCTTGAATTTTTGGGCAGTGAAGCAAGGTCGTATACTCCTCCAAAGTA
326 TAACATAAGCTTTGTTACCTTGAATTTTTGGGCAGTGAAGCAAGGTCGTATACTCCTCCAAAGTA
32314528 GGGACTAAGTCTACCTCTCCAAACGTGAAACAACTATAGGCAGGGTTCCAAAATTGTACCATAGC
391 GGGACTAAGTCTACCTCTCCAAACGTGAAACAACTATAGGCAGGGTTCCAAAATTGTACCATAGC
32314593 TCAGAACAGATGTTTATCTACCTTGATGTCTAGCAAATAGGGAAGATCTCCATAATTCTGATAGA
456 TCAGAACAGATGTTTATCTACCTTGATGTCTAGCAAATAGGGAAGATCTCCATAATTCTGATAGA
32314658 AAAGCTGCTTAGCCTCGTCATCCCATTGGGCCCAAATGTCTCTCAACTCCTAAAACTCATTCTGT
521 AAAGCTGCTTAGCCTCGTCATCCCATTGGGCCCAAATGTCTCTCAACTCCTAAAACTCATTCTGT
32314723 GTCGAATTAATACGAGTGAAGTCCCATAACTCTG
586 GTCGAATTAATACGAGTGAAGTCCCATAACTCTG
32314757 CTCCAATATGCACTCAAGGATCTAAACGTCTCGGCTAGGATTGCAGGCACAGGTATATTCTGTTT
1 CTCCAATATGCACTCAAGGATCTAAACGTCTCGGCTAGGATTGCAGGCACAGGTATATTCTGTTT
32314822 ACTAACTCGATCGAATAGATCTGCAACTGCCTCATCTATGTGCCCCATAGCTTTTGGGAAAATCA
66 ACTAACTCGATCGAATAGATCTGCAACTGCCTCATCTATGTGCCCCATAGCTTTTGGGAAAATCA
32314887 CCAATCCATACATACTTAACGCCAAGACATCAACCCTCTTCTTCACATCTGGGTGTGCCAATATC
131 CCAATCCATACATACTTAACGCCAAGACATCAACCCTCTTCTTCACATCTGGGTGTGCCAATATC
32314952 AAATCCCTCAAACTTGCCCACGGAATGCATTTGCTATCACCCTTTTGTTGGATTCGAGCTGTGGC
196 AAATCCCTCAAACTTGCCCACGGAATGCATTTGCTATCACCCTTTTGTTGGATTCGAGCTGTGGC
32315017 CCACTATTCACTCACCCCTATAATCATCATTAATTTCTTCAAGAAAATTGGGGGATTAGCAGCCC
261 CCACTATTCACTCACCCCTATAATCATCATTAATTTCTTCAAGAAAATTGGGGGATTAGCAGCCC
32315082 TAACATAAGCTTTGTTACCTTGAATTTTTGGGCAGTGAAGCAAGGTCGTATACTCCTCCAAAGTA
326 TAACATAAGCTTTGTTACCTTGAATTTTTGGGCAGTGAAGCAAGGTCGTATACTCCTCCAAAGTA
32315147 GGGACTAAGTCTACCTCTCCAAACGTGAAACAACTATAGGCAGGGTTCCAAAATTGTACCATAGC
391 GGGACTAAGTCTACCTCTCCAAACGTGAAACAACTATAGGCAGGGTTCCAAAATTGTACCATAGC
32315212 TCAGAACAGATGTTTATCTACCTTGATGTCTAGCAAATAGGGAAGATCTCCATAATTCTGATAGA
456 TCAGAACAGATGTTTATCTACCTTGATGTCTAGCAAATAGGGAAGATCTCCATAATTCTGATAGA
32315277 AAAGCTGCTTAGCCTCGTCATCCCATTGGGCCCAAATGTCTCTCAACTCCTAAAACTCATTCTGT
521 AAAGCTGCTTAGCCTCGTCATCCCATTGGGCCCAAATGTCTCTCAACTCCTAAAACTCATTCTGT
32315342 GTCGAATTAATACGAGTGAAGTCCCATAACTCTG
586 GTCGAATTAATACGAGTGAAGTCCCATAACTCTG
32315376 ATGTATACCC
Statistics
Matches: 619, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
619 619 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.28
Consensus pattern (619 bp):
CTCCAATATGCACTCAAGGATCTAAACGTCTCGGCTAGGATTGCAGGCACAGGTATATTCTGTTT
ACTAACTCGATCGAATAGATCTGCAACTGCCTCATCTATGTGCCCCATAGCTTTTGGGAAAATCA
CCAATCCATACATACTTAACGCCAAGACATCAACCCTCTTCTTCACATCTGGGTGTGCCAATATC
AAATCCCTCAAACTTGCCCACGGAATGCATTTGCTATCACCCTTTTGTTGGATTCGAGCTGTGGC
CCACTATTCACTCACCCCTATAATCATCATTAATTTCTTCAAGAAAATTGGGGGATTAGCAGCCC
TAACATAAGCTTTGTTACCTTGAATTTTTGGGCAGTGAAGCAAGGTCGTATACTCCTCCAAAGTA
GGGACTAAGTCTACCTCTCCAAACGTGAAACAACTATAGGCAGGGTTCCAAAATTGTACCATAGC
TCAGAACAGATGTTTATCTACCTTGATGTCTAGCAAATAGGGAAGATCTCCATAATTCTGATAGA
AAAGCTGCTTAGCCTCGTCATCCCATTGGGCCCAAATGTCTCTCAACTCCTAAAACTCATTCTGT
GTCGAATTAATACGAGTGAAGTCCCATAACTCTG
Found at i:32316233 original size:257 final size:258
Alignment explanation
Indices: 32315770--32316283 Score: 967
Period size: 257 Copynumber: 2.0 Consensus size: 258
32315760 ACACATTTCC
32315770 CTATGGCCATGTGGAGATGAAAATCTCACGAAGACATAGGTACAGTATCCCGGAAGCAGTCCACT
1 CTATGGCCATGTGGAGATGAAAATCTCACGAAGACATAGGTACAGTATCCCGGAAGCAGTCCACT
*
32315835 AGCTCATACGGAGGTGAAAACCTCACGAAAGCGTAGCTTCTCACTCCCACTTAGGGGTGCGACCA
66 AGCTCATACAGAGGTGAAAACCTCACGAAAGCGTAGCTTCTCACTCCCACTTAGGGGTGCGACCA
32315900 CAACGGTCATGCGAATGCAATGTGTGTGGAAACAAGATAACAAACATATACAACAAACATATGTA
131 CAACGGTCATGCGAATGCAATGTGTGTGGAAACAAGATAACAAACATATACAACAAACATATGTA
*
32315965 AAAATATCAATATATGTAAAATTTTCCAAACTTCCGACATTAAGACAGAAAATAATCAATTTT
196 AAAAGATCAATATATGTAAAATTTTCCAAACTTCCGACATTAAGACAGAAAATAATCAATTTT
*
32316028 CTATGGCCATGTGGAGATGCAAATCTCACGAAGACATAGGTACAGTATCCCGGAAGCAGTCCACT
1 CTATGGCCATGTGGAGATGAAAATCTCACGAAGACATAGGTACAGTATCCCGGAAGCAGTCCACT
32316093 AGCTCATACAGAGGTG-AAACCTCACGAAAGCGTAGCTTCTCACTCCCACTTAGGGGTGCGACCA
66 AGCTCATACAGAGGTGAAAACCTCACGAAAGCGTAGCTTCTCACTCCCACTTAGGGGTGCGACCA
* * *
32316157 CAACGGTCATGCGAATGCAATGTGTGTGGAAACAATATAACAAACATATGCAGCAAACATATGTA
131 CAACGGTCATGCGAATGCAATGTGTGTGGAAACAAGATAACAAACATATACAACAAACATATGTA
32316222 AAAAGATCAATATATGTAAAATTTTCCAAACTTCCGACATTAAGACAGAAAATAATCAATTT
196 AAAAGATCAATATATGTAAAATTTTCCAAACTTCCGACATTAAGACAGAAAATAATCAATTT
32316284 CTTGGCTTGA
Statistics
Matches: 250, Mismatches: 6, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
257 171 0.68
258 79 0.32
ACGTcount: A:0.38, C:0.21, G:0.19, T:0.22
Consensus pattern (258 bp):
CTATGGCCATGTGGAGATGAAAATCTCACGAAGACATAGGTACAGTATCCCGGAAGCAGTCCACT
AGCTCATACAGAGGTGAAAACCTCACGAAAGCGTAGCTTCTCACTCCCACTTAGGGGTGCGACCA
CAACGGTCATGCGAATGCAATGTGTGTGGAAACAAGATAACAAACATATACAACAAACATATGTA
AAAAGATCAATATATGTAAAATTTTCCAAACTTCCGACATTAAGACAGAAAATAATCAATTTT
Found at i:32316992 original size:13 final size:13
Alignment explanation
Indices: 32316967--32317000 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
32316957 TAAAATATAT
32316967 AATGTAT-AATAA
1 AATGTATAAATAA
*
32316979 AATTTATAAATAA
1 AATGTATAAATAA
32316992 AATGTATAA
1 AATGTATAA
32317001 TAATAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 6 0.32
13 13 0.68
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.35
Consensus pattern (13 bp):
AATGTATAAATAA
Found at i:32317002 original size:12 final size:12
Alignment explanation
Indices: 32316967--32317003 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
32316957 TAAAATATAT
32316967 AATGTATAATAA
1 AATGTATAATAA
*
32316979 AATTTATAAATAA
1 AATGTAT-AATAA
32316992 AATGTATAATAA
1 AATGTATAATAA
32317004 TAAAAATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.35
Consensus pattern (12 bp):
AATGTATAATAA
Found at i:32317012 original size:25 final size:24
Alignment explanation
Indices: 32316959--32317026 Score: 59
Period size: 25 Copynumber: 2.8 Consensus size: 24
32316949 ATATGTAGTA
*
32316959 AAAT-ATATAATGTATAATAAAAT
1 AAATAATAAAATGTATAATAAAAT
**
32316982 TTATAAATAAAATGTATAATAATAA-
1 AAAT-AATAAAATGTATAATAA-AAT
* *
32317007 AAATAATATAATGAATAATA
1 AAATAATAAAATGTATAATA
32317027 TTTAAATAAA
Statistics
Matches: 35, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
23 2 0.06
24 14 0.40
25 17 0.49
26 2 0.06
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (24 bp):
AAATAATAAAATGTATAATAAAAT
Found at i:32317023 original size:12 final size:12
Alignment explanation
Indices: 32316963--32317027 Score: 51
Period size: 12 Copynumber: 5.3 Consensus size: 12
32316953 GTAGTAAAAT
32316963 ATATAATGTATA
1 ATATAATGTATA
* *
32316975 ATAAAATTTATAA
1 ATATAATGTAT-A
*
32316988 ATAAAATGTATA
1 ATATAATGTATA
**
32317000 ATAATAA-AAATA
1 AT-ATAATGTATA
*
32317012 ATATAATGAATA
1 ATATAATGTATA
32317024 ATAT
1 ATAT
32317028 TTAAATAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
11 4 0.09
12 25 0.58
13 14 0.33
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (12 bp):
ATATAATGTATA
Found at i:32323021 original size:17 final size:17
Alignment explanation
Indices: 32322999--32323032 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
32322989 AGACCCTCTG
32322999 TATTTTAATAGATAAAA
1 TATTTTAATAGATAAAA
32323016 TATTTTAATAGATAAAA
1 TATTTTAATAGATAAAA
32323033 CCAAACCAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (17 bp):
TATTTTAATAGATAAAA
Found at i:32323492 original size:45 final size:45
Alignment explanation
Indices: 32323401--32323494 Score: 116
Period size: 45 Copynumber: 2.1 Consensus size: 45
32323391 GACACATAGT
* * * *
32323401 AAAAACACCGCAGATGGAATTTTCCTATGGTTCTGGATACACAAC
1 AAAAACACCGCAGATGGAATCTGCCAATGGCTCTGGATACACAAC
* * * *
32323446 AAAAACACCGTAGATGGAATCTGCCAATGGCTGTGGGTACATAAC
1 AAAAACACCGCAGATGGAATCTGCCAATGGCTCTGGATACACAAC
32323491 AAAA
1 AAAA
32323495 TAATATGGAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.21
Consensus pattern (45 bp):
AAAAACACCGCAGATGGAATCTGCCAATGGCTCTGGATACACAAC
Found at i:32325046 original size:36 final size:35
Alignment explanation
Indices: 32325005--32325075 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 35
32324995 GTGTGATTTT
32325005 TATCCTAATTTGTTAAAATTAAAAAGAAAAGAAATG
1 TATCCTAATTTGTTAAAATTAAAAA-AAAAGAAATG
* *
32325041 TATCCTAATTTGTTTACATTAAAAAAAAAGAAATG
1 TATCCTAATTTGTTAAAATTAAAAAAAAAGAAATG
32325076 GGGGAGTGGT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
35 10 0.30
36 23 0.70
ACGTcount: A:0.51, C:0.07, G:0.10, T:0.32
Consensus pattern (35 bp):
TATCCTAATTTGTTAAAATTAAAAAAAAAGAAATG
Found at i:32327575 original size:42 final size:41
Alignment explanation
Indices: 32327508--32327590 Score: 139
Period size: 42 Copynumber: 2.0 Consensus size: 41
32327498 GTCTAAGTAG
32327508 TGAAGTTTGATTCTTTTTCTTTTTGTTATGATCATGAATCT
1 TGAAGTTTGATTCTTTTTCTTTTTGTTATGATCATGAATCT
* *
32327549 TGAATTTTGATTCTTTTTTCTTTTTGTTATGATTATGAATCT
1 TGAAGTTTGATTC-TTTTTCTTTTTGTTATGATCATGAATCT
32327591 ATCTTCTTCT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
41 12 0.31
42 27 0.69
ACGTcount: A:0.19, C:0.08, G:0.13, T:0.59
Consensus pattern (41 bp):
TGAAGTTTGATTCTTTTTCTTTTTGTTATGATCATGAATCT
Found at i:32335468 original size:21 final size:21
Alignment explanation
Indices: 32335443--32335596 Score: 83
Period size: 21 Copynumber: 7.3 Consensus size: 21
32335433 CTGTAATCTG
*
32335443 AATAGAAGCTCATGAGAGCTA
1 AATAGAAGCTCATAAGAGCTA
* * *
32335464 AATAGAAACTCATAAGAGTTT
1 AATAGAAGCTCATAAGAGCTA
* * *
32335485 AACAGAAGCTCGTAAGAGCTG
1 AATAGAAGCTCATAAGAGCTA
* * * * *
32335506 AACAAAAACTCATAAGAGTTG
1 AATAGAAGCTCATAAGAGCTA
* * * * * *
32335527 AACAGAAACTCGTAGGATCTG
1 AATAGAAGCTCATAAGAGCTA
* * * * *
32335548 AACAGAAACTCATAAAAGTTG
1 AATAGAAGCTCATAAGAGCTA
*
32335569 AACAGAAGCTCATAAGAGCTA
1 AATAGAAGCTCATAAGAGCTA
*
32335590 AACAGAA
1 AATAGAA
32335597 AGTAAAACAT
Statistics
Matches: 106, Mismatches: 27, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 106 1.00
ACGTcount: A:0.47, C:0.16, G:0.19, T:0.18
Consensus pattern (21 bp):
AATAGAAGCTCATAAGAGCTA
Found at i:32335515 original size:42 final size:42
Alignment explanation
Indices: 32335441--32335597 Score: 197
Period size: 42 Copynumber: 3.7 Consensus size: 42
32335431 GTCTGTAATC
* * *
32335441 TGAATAGAAGCTCATGAGAGCTAAATAGAAACTCATAAGAGT
1 TGAACAGAAGCTCATAAGAGCTAAACAGAAACTCATAAGAGT
* * * *
32335483 TTAACAGAAGCTCGTAAGAGCTGAACAAAAACTCATAAGAGT
1 TGAACAGAAGCTCATAAGAGCTAAACAGAAACTCATAAGAGT
* * * * * *
32335525 TGAACAGAAACTCGTAGGATCTGAACAGAAACTCATAAAAGT
1 TGAACAGAAGCTCATAAGAGCTAAACAGAAACTCATAAGAGT
32335567 TGAACAGAAGCTCATAAGAGCTAAACAGAAA
1 TGAACAGAAGCTCATAAGAGCTAAACAGAAA
32335598 GTAAAACATG
Statistics
Matches: 97, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 97 1.00
ACGTcount: A:0.46, C:0.15, G:0.20, T:0.18
Consensus pattern (42 bp):
TGAACAGAAGCTCATAAGAGCTAAACAGAAACTCATAAGAGT
Found at i:32335534 original size:63 final size:63
Alignment explanation
Indices: 32335451--32335597 Score: 161
Period size: 63 Copynumber: 2.3 Consensus size: 63
32335441 TGAATAGAAG
* * * * * *
32335451 CTCATGAGAGCTAAATAGAAACTCATAAGAGT-TTAACAGAAGCTCGTAAGAGCTGAACAAAAA
1 CTCATAAGAGCTAAACAGAAACTCATAAGA-TCTGAACAGAAACTCATAAAAGCTGAACAAAAA
* * * * * * *
32335514 CTCATAAGAGTTGAACAGAAACTCGTAGGATCTGAACAGAAACTCATAAAAGTTGAACAGAAG
1 CTCATAAGAGCTAAACAGAAACTCATAAGATCTGAACAGAAACTCATAAAAGCTGAACAAAAA
32335577 CTCATAAGAGCTAAACAGAAA
1 CTCATAAGAGCTAAACAGAAA
32335598 GTAAAACATG
Statistics
Matches: 68, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
62 1 0.01
63 67 0.99
ACGTcount: A:0.46, C:0.16, G:0.19, T:0.18
Consensus pattern (63 bp):
CTCATAAGAGCTAAACAGAAACTCATAAGATCTGAACAGAAACTCATAAAAGCTGAACAAAAA
Found at i:32336414 original size:27 final size:27
Alignment explanation
Indices: 32336384--32336509 Score: 130
Period size: 27 Copynumber: 4.7 Consensus size: 27
32336374 TGTAGGGTAG
*
32336384 AATTACCAAAATACCCTTTGTTTATAC
1 AATTACCAAAATACCCTTTGTTTATAA
* * *
32336411 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTTGTTTATAA
* *
32336438 AATTACCAAAATA-CCTCTAGTTTGTAA
1 AATTACCAAAATACCCT-TTGTTTATAA
* *
32336465 AATTACCAAAATA-CCTCTGATTTATGA
1 AATTACCAAAATACCCTTTG-TTTATAA
**
32336492 AATTACTGAAATACCCTT
1 AATTACCAAAATACCCTT
32336510 GACCTATAAA
Statistics
Matches: 83, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
26 3 0.04
27 77 0.93
28 3 0.04
ACGTcount: A:0.39, C:0.21, G:0.07, T:0.33
Consensus pattern (27 bp):
AATTACCAAAATACCCTTTGTTTATAA
Found at i:32336442 original size:54 final size:54
Alignment explanation
Indices: 32336384--32336562 Score: 157
Period size: 54 Copynumber: 3.3 Consensus size: 54
32336374 TGTAGGGTAG
* * * *
32336384 AATTACCAAAATACCCTTTGTTTATACAATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTAGTTTATAAAATTACCAAAATACCCCTGATTTATAA
* * *
32336438 AATTACCAAAATA-CCTCTAGTTTGTAAAATTACCAAAATACCTCTGATTTATGA
1 AATTACCAAAATACCCT-TAGTTTATAAAATTACCAAAATACCCCTGATTTATAA
** ** *** * *
32336492 AATTACTGAAATACCCTT-GACCTATAAAATTATTGAAATA-CCCTCGACTTGTAA
1 AATTACCAAAATACCCTTAG-TTTATAAAATTACCAAAATACCCCT-GATTTATAA
*
32336546 AATTACCAAAGTACCCT
1 AATTACCAAAATACCCT
32336563 CAATTTACAG
Statistics
Matches: 99, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
53 7 0.07
54 89 0.90
55 3 0.03
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (54 bp):
AATTACCAAAATACCCTTAGTTTATAAAATTACCAAAATACCCCTGATTTATAA
Found at i:32336560 original size:27 final size:26
Alignment explanation
Indices: 32336432--32336563 Score: 88
Period size: 27 Copynumber: 4.9 Consensus size: 26
32336422 TACCCCTGGT
* *
32336432 TTGTAAAATTACCAAAATA-CCTCTAGT
1 TTGTAAAATTACC-AAATACCCTCGA-C
*
32336459 TTGTAAAATTACCAAAATA-CCTCTGAT
1 TTGTAAAATTACC-AAATACCCTC-GAC
* * * *
32336486 TTATGAAATTACTGAAATACCCTTGAC
1 TTGTAAAATTAC-CAAATACCCTCGAC
* * **
32336513 CTATAAAATTATTGAAATACCCTCGAC
1 TTGTAAAATTA-CCAAATACCCTCGAC
32336540 TTGTAAAATTACCAAAGTACCCTC
1 TTGTAAAATTACCAAA-TACCCTC
32336564 AATTTACAGA
Statistics
Matches: 86, Mismatches: 14, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
26 3 0.03
27 79 0.92
28 4 0.05
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.32
Consensus pattern (26 bp):
TTGTAAAATTACCAAATACCCTCGAC
Found at i:32336587 original size:27 final size:27
Alignment explanation
Indices: 32336557--32336778 Score: 232
Period size: 27 Copynumber: 8.2 Consensus size: 27
32336547 ATTACCAAAG
* *
32336557 TACCCTCAATTTACAGATTTATCGTTT
1 TACCCTCGATTTACAGAATTATCGTTT
* * *
32336584 TACCCTTGATTTACAAAATTATCATTT
1 TACCCTCGATTTACAGAATTATCGTTT
*
32336611 TACCCTCGATTTATAGAATTAAT-GTTT
1 TACCCTCGATTTACAGAATT-ATCGTTT
*
32336638 TATCCTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTATCGTTT
* * *
32336665 TACCCTTGATTTACAAAATTA-CTATTT
1 TACCCTCGATTTACAGAATTATC-GTTT
* * * *
32336692 TATCCTCAATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTATCGTTT
*
32336719 TGCCCTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTATCGTTT
* * * * *
32336746 TACCCTCAATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTATCGTTT
32336773 TACCCT
1 TACCCT
32336779 TAGGGTGTTA
Statistics
Matches: 161, Mismatches: 30, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
26 3 0.02
27 155 0.96
28 3 0.02
ACGTcount: A:0.30, C:0.21, G:0.07, T:0.43
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTATCGTTT
Found at i:32336602 original size:54 final size:54
Alignment explanation
Indices: 32336530--32336769 Score: 151
Period size: 54 Copynumber: 4.4 Consensus size: 54
32336520 ATTATTGAAA
* ** *
32336530 TACCCTCGACTTGTAAAATTACCAAAGTACCCTCAATTTACAG-ATTTATCGTTT
1 TACCCTCGATTTACAAAATTACCAAAGTACCCTCAATTTACAGAATTAAT-GTTT
* * *** * *
32336584 TACCCTTGATTTACAAAATTATCATTTTACCCTCGATTTATAGAATTAATGTTT
1 TACCCTCGATTTACAAAATTACCAAAGTACCCTCAATTTACAGAATTAATGTTT
* * * **** ** * * *
32336638 TATCCTCGATTTACAGAATTATCGTTTTACCCTTGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACCAAAGTACCCTCAATTTACAGAATTAATGTTT
* * **** * *
32336692 TATCCTCAATTTACAAAATTACCGTTTTGCCCTCGATTTACAGAATT-ATCGTTT
1 TACCCTCGATTTACAAAATTACCAAAGTACCCTCAATTTACAGAATTAAT-GTTT
* *
32336746 TACCCTCAATTTATAAAATTACCA
1 TACCCTCGATTTACAAAATTACCA
32336770 TTTTACCCTT
Statistics
Matches: 153, Mismatches: 31, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
53 1 0.01
54 147 0.96
55 5 0.03
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.40
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCAAAGTACCCTCAATTTACAGAATTAATGTTT
Found at i:32336602 original size:81 final size:81
Alignment explanation
Indices: 32336528--32336766 Score: 192
Period size: 81 Copynumber: 3.0 Consensus size: 81
32336518 AAATTATTGA
* * *
32336528 AATACCCTCGACTTGTAAAATTACCAAAGTACCCTCAATTTACAGATTTATCGTTTTACCCTTGA
1 AATACCCTCGACTTATAAAATTAACAAAGTACCCTCAATTTACAGAATTATCGTTTTACCCTTGA
32336593 TTTACAAAATTATCAT
66 TTTACAAAATTATCAT
** * * ***** * *
32336609 TTTACCCTCGATTTATAGAATTAATGTTTTATCCTCGATTTACAGAATTATCGTTTTACCCTTGA
1 AATACCCTCGACTTATAAAATTAACAAAGTACCCTCAATTTACAGAATTATCGTTTTACCCTTGA
32336674 TTTACAAAATTA-CTAT
66 TTTACAAAATTATC-AT
** * * * * * **** * * **
32336690 TTTATCCTCAATTTACAAAATTACCGTTTTGCCCTCGATTTACAGAATTATCGTTTTACCCTCAA
1 AATACCCTCGACTTATAAAATTAACAAAGTACCCTCAATTTACAGAATTATCGTTTTACCCTTGA
*
32336755 TTTATAAAATTA
66 TTTACAAAATTA
32336767 CCATTTTACC
Statistics
Matches: 132, Mismatches: 25, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
80 1 0.01
81 131 0.99
ACGTcount: A:0.32, C:0.20, G:0.08, T:0.41
Consensus pattern (81 bp):
AATACCCTCGACTTATAAAATTAACAAAGTACCCTCAATTTACAGAATTATCGTTTTACCCTTGA
TTTACAAAATTATCAT
Found at i:32336767 original size:81 final size:81
Alignment explanation
Indices: 32336557--32336778 Score: 302
Period size: 81 Copynumber: 2.7 Consensus size: 81
32336547 ATTACCAAAG
* * *
32336557 TACCCTCAATTTACAGATTTATCGTTTTACCCTTGATTTACAAAATTA-TCATTTTACCCTCGAT
1 TACCCTCGATTTACAGAATTATCGTTTTACCCTTGATTTACAAAATTACT-ATTTTACCCTCAAT
* * *
32336621 TTATAGAATTAATGTTT
65 TTACAAAATTAACGTTT
* *
32336638 TATCCTCGATTTACAGAATTATCGTTTTACCCTTGATTTACAAAATTACTATTTTATCCTCAATT
1 TACCCTCGATTTACAGAATTATCGTTTTACCCTTGATTTACAAAATTACTATTTTACCCTCAATT
*
32336703 TACAAAATTACCGTTT
66 TACAAAATTAACGTTT
* ** * *
32336719 TGCCCTCGATTTACAGAATTATCGTTTTACCCTCAATTTATAAAATTACCATTTTACCCT
1 TACCCTCGATTTACAGAATTATCGTTTTACCCTTGATTTACAAAATTACTATTTTACCCT
32336779 TAGGGTGTTA
Statistics
Matches: 124, Mismatches: 16, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
81 123 0.99
82 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.07, T:0.43
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTATCGTTTTACCCTTGATTTACAAAATTACTATTTTACCCTCAATT
TACAAAATTAACGTTT
Found at i:32336800 original size:81 final size:81
Alignment explanation
Indices: 32336559--32336805 Score: 246
Period size: 81 Copynumber: 3.0 Consensus size: 81
32336549 TACCAAAGTA
* * * * *
32336559 CCCTCAATTTACAGATTTATCGTTTTACCCTTGATTTACAAAATTATCATTTTACCC-T-CGATT
1 CCCTCGATTTACAGAATTATCGTTTTACCCTTGATTTACAAAATTACCATTTTACCCTTAAGATA
*
32336622 TATAGAATTAATGTTTTA
66 T-TA-AATTAATGTTTTG
* * * * **
32336640 TCCTCGATTTACAGAATTATCGTTTTACCCTTGATTTACAAAATTACTATTTTATCCTCAATTTA
1 CCCTCGATTTACAGAATTATCGTTTTACCCTTGATTTACAAAATTACCATTTTACCCTTAAGATA
** **
32336705 CAAAATTACCGTTTTG
66 TTAAATTAATGTTTTG
** * * * *
32336721 CCCTCGATTTACAGAATTATCGTTTTACCCTCAATTTATAAAATTACCATTTTACCCTTAGGGTG
1 CCCTCGATTTACAGAATTATCGTTTTACCCTTGATTTACAAAATTACCATTTTACCCTTAAGATA
* *
32336786 TTAAATGATTGTTTTG
66 TTAAATTAATGTTTTG
32336802 CCCT
1 CCCT
32336806 TGTGGGCAAG
Statistics
Matches: 132, Mismatches: 32, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
81 130 0.98
82 1 0.01
83 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.09, T:0.43
Consensus pattern (81 bp):
CCCTCGATTTACAGAATTATCGTTTTACCCTTGATTTACAAAATTACCATTTTACCCTTAAGATA
TTAAATTAATGTTTTG
Found at i:32337056 original size:27 final size:26
Alignment explanation
Indices: 32337012--32337062 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
32337002 CTCGCTGTAA
*
32337012 TCTGGTGACCTCGCCACATATATCTAT
1 TCTGGAGACCTCGCCACA-ATATCTAT
* *
32337039 TCTGGAGACTTCGTCACAATATCT
1 TCTGGAGACCTCGCCACAATATCT
32337063 GGTAGCCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.24, C:0.27, G:0.16, T:0.33
Consensus pattern (26 bp):
TCTGGAGACCTCGCCACAATATCTAT
Found at i:32337315 original size:31 final size:31
Alignment explanation
Indices: 32337280--32337359 Score: 108
Period size: 31 Copynumber: 2.6 Consensus size: 31
32337270 TGGCATTCAC
*
32337280 ATTCTGATTTTGATTCTGTTACCTGATATTG
1 ATTCTGATTTTGATTCTGTCACCTGATATTG
* *
32337311 ATTCTGATTCTT-ATTCTATCACCTGATTTTG
1 ATTCTGATT-TTGATTCTGTCACCTGATATTG
*
32337342 ATTCTGATTCTGATTCTG
1 ATTCTGATTTTGATTCTG
32337360 ACTCTAGTTC
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
30 1 0.02
31 39 0.93
32 2 0.05
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.51
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTCACCTGATATTG
Found at i:32337318 original size:6 final size:6
Alignment explanation
Indices: 32337280--32337373 Score: 61
Period size: 6 Copynumber: 15.3 Consensus size: 6
32337270 TGGCATTCAC
* *
32337280 ATTCTG ATTTTG ATTCTG -TTACCTG ATAT-TG ATTCTG ATTCTT ATTCT-
1 ATTCTG ATTCTG ATTCTG ATT--CTG AT-TCTG ATTCTG ATTCTG ATTCTG
* * *
32337328 ATCACCTG ATTTTG ATTCTG ATTCTG ATTCTG ACTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
32337374 AATGTTTCTT
Statistics
Matches: 69, Mismatches: 9, Indels: 20
0.70 0.09 0.20
Matches are distributed among these distances:
5 6 0.09
6 53 0.77
7 6 0.09
8 3 0.04
9 1 0.01
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:32339454 original size:38 final size:38
Alignment explanation
Indices: 32339403--32339477 Score: 132
Period size: 38 Copynumber: 2.0 Consensus size: 38
32339393 ATTCTACCAT
*
32339403 GCAAGTTTTGTGGAATGGGGTTTCAACACAGAAATTTG
1 GCAAGGTTTGTGGAATGGGGTTTCAACACAGAAATTTG
*
32339441 GCAAGGTTTGTGGAATGGGGTTTCAACACATAAATTT
1 GCAAGGTTTGTGGAATGGGGTTTCAACACAGAAATTT
32339478 AGGCCTACCA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.29, C:0.11, G:0.28, T:0.32
Consensus pattern (38 bp):
GCAAGGTTTGTGGAATGGGGTTTCAACACAGAAATTTG
Found at i:32341780 original size:12 final size:12
Alignment explanation
Indices: 32341763--32341788 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
32341753 AATGATTGGT
32341763 TACTAATTAACC
1 TACTAATTAACC
32341775 TACTAATTAACC
1 TACTAATTAACC
32341787 TA
1 TA
32341789 GCAGGGCTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.23, G:0.00, T:0.35
Consensus pattern (12 bp):
TACTAATTAACC
Found at i:32351879 original size:16 final size:16
Alignment explanation
Indices: 32351831--32351884 Score: 60
Period size: 16 Copynumber: 3.5 Consensus size: 16
32351821 AGTTATTATT
32351831 TATAA-AAGATATTTA
1 TATAATAAGATATTTA
*
32351846 T-TAATTAAG-TAATTA
1 TATAA-TAAGATATTTA
*
32351861 TATTATAAGATATTTA
1 TATAATAAGATATTTA
32351877 TATAATAA
1 TATAATAA
32351885 ATAAATTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
14 3 0.10
15 11 0.35
16 17 0.55
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (16 bp):
TATAATAAGATATTTA
Found at i:32351897 original size:31 final size:31
Alignment explanation
Indices: 32351836--32351897 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 31
32351826 TTATTTATAA
*
32351836 AAGATATTTATTAATTAAGTAATTATATTAT
1 AAGATATTTATTAATTAAATAATTATATTAT
32351867 AAGATATTTATATAA-TAAATAAATTA-ATTAT
1 AAGATATTTAT-TAATTAAAT-AATTATATTAT
32351898 GACAAGTGTA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
31 20 0.71
32 8 0.29
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (31 bp):
AAGATATTTATTAATTAAATAATTATATTAT
Found at i:32358195 original size:20 final size:23
Alignment explanation
Indices: 32358162--32358219 Score: 64
Period size: 24 Copynumber: 2.5 Consensus size: 23
32358152 GAATGCCAAG
* * *
32358162 TGTGTGATAAAAATA-AAATACA
1 TGTGTAATAAATATATACATACA
32358184 TGTGTAATAAATATTATACATACA
1 TGTGTAATAAATA-TATACATACA
*
32358208 TTTGTAATAAAT
1 TGTGTAATAAAT
32358220 GTATGTATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
22 11 0.37
23 2 0.07
24 17 0.57
ACGTcount: A:0.48, C:0.05, G:0.10, T:0.36
Consensus pattern (23 bp):
TGTGTAATAAATATATACATACA
Found at i:32359432 original size:51 final size:54
Alignment explanation
Indices: 32359355--32359473 Score: 145
Period size: 51 Copynumber: 2.3 Consensus size: 54
32359345 AAGTGTCGCT
*
32359355 TTACTGTTACTATTTCAGATTCGTTCTGAAGAGGTA-T-TCCGTACC-TTACCG
1 TTACTGTTACTATTCCAGATTCGTTCTGAAGAGGTACTCTCCGTACCGTTACCG
* * * * ** *
32359406 TTACTGTTACTGTTCCGGATTTGTTCTGATGAGGTACTCTGTGTACCGTTACTG
1 TTACTGTTACTATTCCAGATTCGTTCTGAAGAGGTACTCTCCGTACCGTTACCG
32359460 TTACTGTTACTATT
1 TTACTGTTACTATT
32359474 ACCGTTATGG
Statistics
Matches: 56, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
51 31 0.55
52 1 0.02
53 6 0.11
54 18 0.32
ACGTcount: A:0.18, C:0.19, G:0.19, T:0.43
Consensus pattern (54 bp):
TTACTGTTACTATTCCAGATTCGTTCTGAAGAGGTACTCTCCGTACCGTTACCG
Found at i:32368045 original size:46 final size:46
Alignment explanation
Indices: 32367987--32368103 Score: 189
Period size: 46 Copynumber: 2.5 Consensus size: 46
32367977 GATAAGTACC
* * *
32367987 TATACCATGGCCCGAAGCCAAATCAAGGTAACTTATCCGAAATACT
1 TATATCATGGCCCGAAGCCAAATCAAGATAACTTATCCAAAATACT
* *
32368033 TATCTTATGGCCCGAAGCCAAATCAAGATAACTTATCCAAAATACT
1 TATATCATGGCCCGAAGCCAAATCAAGATAACTTATCCAAAATACT
32368079 TATATCATGGCCCGAAGCCAAATCA
1 TATATCATGGCCCGAAGCCAAATCA
32368104 GTTTATCTCG
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 64 1.00
ACGTcount: A:0.38, C:0.26, G:0.14, T:0.23
Consensus pattern (46 bp):
TATATCATGGCCCGAAGCCAAATCAAGATAACTTATCCAAAATACT
Found at i:32375570 original size:48 final size:48
Alignment explanation
Indices: 32375514--32375609 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
32375504 CGCCCTATCG
32375514 GTGTAACCGTGTAGTGAACTTAGCACCCGAAGGTTAAGACAGTACTTC
1 GTGTAACCGTGTAGTGAACTTAGCACCCGAAGGTTAAGACAGTACTTC
32375562 GTGTAACCGTGTAGTGAACTTAGCACCCGAAGGTTAAGACAGTACTTC
1 GTGTAACCGTGTAGTGAACTTAGCACCCGAAGGTTAAGACAGTACTTC
32375610 AATATTTATA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (48 bp):
GTGTAACCGTGTAGTGAACTTAGCACCCGAAGGTTAAGACAGTACTTC
Found at i:32379667 original size:56 final size:56
Alignment explanation
Indices: 32379543--32379659 Score: 234
Period size: 56 Copynumber: 2.1 Consensus size: 56
32379533 CAAGTAAACC
32379543 AATTTAAGCGAAAGCATCCCAAGGAGAAAACATTGTTAATCACCAAATGACAATCA
1 AATTTAAGCGAAAGCATCCCAAGGAGAAAACATTGTTAATCACCAAATGACAATCA
32379599 AATTTAAGCGAAAGCATCCCAAGGAGAAAACATTGTTAATCACCAAATGACAATCA
1 AATTTAAGCGAAAGCATCCCAAGGAGAAAACATTGTTAATCACCAAATGACAATCA
32379655 AATTT
1 AATTT
32379660 TTACGAAAAC
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 61 1.00
ACGTcount: A:0.46, C:0.19, G:0.14, T:0.21
Consensus pattern (56 bp):
AATTTAAGCGAAAGCATCCCAAGGAGAAAACATTGTTAATCACCAAATGACAATCA
Found at i:32381884 original size:24 final size:24
Alignment explanation
Indices: 32381857--32381908 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
32381847 TTAGTAAGTC
*
32381857 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
32381881 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
32381905 AAAT
1 AAAT
32381909 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:32383854 original size:24 final size:24
Alignment explanation
Indices: 32383827--32383878 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
32383817 TTAGTAAGTC
*
32383827 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
32383851 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
32383875 AAAT
1 AAAT
32383879 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:32384637 original size:20 final size:20
Alignment explanation
Indices: 32384612--32384649 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
32384602 GTGATTCAAT
32384612 ATATATAA-TAATTATTTAAC
1 ATATATAATTAATT-TTTAAC
32384632 ATATATAATTAATTTTTA
1 ATATATAATTAATTTTTA
32384650 TATCATAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (20 bp):
ATATATAATTAATTTTTAAC
Found at i:32385329 original size:16 final size:17
Alignment explanation
Indices: 32385302--32385340 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
32385292 AGGATTAAGG
32385302 TTTAGTGGTTTAGGATT
1 TTTAGTGGTTTAGGATT
*
32385319 TTTAG-GGTTTAGTA-T
1 TTTAGTGGTTTAGGATT
32385334 TTTAGTG
1 TTTAGTG
32385341 TTTTTTAAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 6 0.30
16 9 0.45
17 5 0.25
ACGTcount: A:0.18, C:0.00, G:0.28, T:0.54
Consensus pattern (17 bp):
TTTAGTGGTTTAGGATT
Done.