Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold643.1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 856865
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.33
Warning! 20449 characters in sequence are not A, C, G, or T
File 1 of 4
Found at i:5937 original size:20 final size:21
Alignment explanation
Indices: 5902--5940 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
5892 ATACATAATT
*
5902 ATTTATTCGTAAAAATTTACA
1 ATTTATTCGAAAAAATTTACA
5923 ATTTATTC-AAAAAATTTA
1 ATTTATTCGAAAAAATTTA
5941 TATTTTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.46, C:0.08, G:0.03, T:0.44
Consensus pattern (21 bp):
ATTTATTCGAAAAAATTTACA
Found at i:6468 original size:40 final size:41
Alignment explanation
Indices: 6411--6495 Score: 145
Period size: 40 Copynumber: 2.1 Consensus size: 41
6401 AAAAAAAAGA
6411 TTTGTGTTTTGCCGCTCTTTCTACTATTTTACTGTTG-TGT
1 TTTGTGTTTTGCCGCTCTTTCTACTATTTTACTGTTGTTGT
* *
6451 TTTGTGTTTTGCTGCTCTTTCTTCTATTTTACTGTTGTTGT
1 TTTGTGTTTTGCCGCTCTTTCTACTATTTTACTGTTGTTGT
6492 TTTG
1 TTTG
6496 CTACTATTTC
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
40 35 0.83
41 7 0.17
ACGTcount: A:0.06, C:0.15, G:0.18, T:0.61
Consensus pattern (41 bp):
TTTGTGTTTTGCCGCTCTTTCTACTATTTTACTGTTGTTGT
Found at i:8409 original size:34 final size:35
Alignment explanation
Indices: 8351--8417 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
8341 CAAACACCAA
8351 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
8386 AAAATATTTTCCCG-AAATCATTTTACGGAAAA
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAA
8418 TATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.45, C:0.13, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:8958 original size:4 final size:4
Alignment explanation
Indices: 8949--8991 Score: 86
Period size: 4 Copynumber: 10.8 Consensus size: 4
8939 AACGGATCCT
8949 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CAT
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CAT
8992 GAAATAAGTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 39 1.00
ACGTcount: A:0.49, C:0.26, G:0.00, T:0.26
Consensus pattern (4 bp):
CATA
Found at i:12608 original size:25 final size:23
Alignment explanation
Indices: 12559--12611 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
12549 AATTTTGGGT
*
12559 CAAAACAAAATATTTTCCTTTCA
1 CAAAACAAAATATTTTCCTTCCA
* *
12582 CAAAATCAATATATTTTTCTTCCCA
1 CAAAA-CAAAATATTTTCCTT-CCA
12607 CAAAA
1 CAAAA
12612 AATTATTCGT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 5 0.20
24 13 0.52
25 7 0.28
ACGTcount: A:0.43, C:0.23, G:0.00, T:0.34
Consensus pattern (23 bp):
CAAAACAAAATATTTTCCTTCCA
Found at i:15124 original size:9 final size:9
Alignment explanation
Indices: 15109--15168 Score: 84
Period size: 9 Copynumber: 6.7 Consensus size: 9
15099 ATGTAGTAAT
15109 TTAATTCGG
1 TTAATTCGG
*
15118 GTAATTCGG
1 TTAATTCGG
* *
15127 GTAATTCGA
1 TTAATTCGG
15136 TTAATTCGG
1 TTAATTCGG
15145 TTAATTCGG
1 TTAATTCGG
*
15154 ATAATTCGG
1 TTAATTCGG
15163 TTAATT
1 TTAATT
15169 TTTAACCAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 45 1.00
ACGTcount: A:0.27, C:0.10, G:0.22, T:0.42
Consensus pattern (9 bp):
TTAATTCGG
Found at i:15140 original size:27 final size:27
Alignment explanation
Indices: 15109--15168 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
15099 ATGTAGTAAT
*
15109 TTAATTCGGGTAATTCGGGTAATTCGA
1 TTAATTCGGGTAATTCGGATAATTCGA
* *
15136 TTAATTCGGTTAATTCGGATAATTCGG
1 TTAATTCGGGTAATTCGGATAATTCGA
15163 TTAATT
1 TTAATT
15169 TTTAACCAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.27, C:0.10, G:0.22, T:0.42
Consensus pattern (27 bp):
TTAATTCGGGTAATTCGGATAATTCGA
Found at i:15226 original size:28 final size:27
Alignment explanation
Indices: 15195--15255 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 27
15185 AAAAAACATA
15195 TAATTAACCGAAAAAATTTCGGTTCGGT
1 TAATTAACCG-AAAAATTTCGGTTCGGT
* ** *
15223 TAATTTTATTGAAAAATTTTGGTTCGGT
1 TAA-TTAACCGAAAAATTTCGGTTCGGT
15251 TAATT
1 TAATT
15256 CGGTTAATGT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
27 2 0.07
28 22 0.79
29 4 0.14
ACGTcount: A:0.33, C:0.08, G:0.16, T:0.43
Consensus pattern (27 bp):
TAATTAACCGAAAAATTTCGGTTCGGT
Found at i:17527 original size:10 final size:10
Alignment explanation
Indices: 17512--17627 Score: 62
Period size: 10 Copynumber: 11.5 Consensus size: 10
17502 TTTTTAAAAT
17512 AATTATTAAA
1 AATTATTAAA
*
17522 AATTATAAAGA
1 AATTATTAA-A
17533 AATTA-TAGAA
1 AATTATTA-AA
**
17543 AACCAATTAAA
1 AA-TTATTAAA
*
17554 AATTATTAAG
1 AATTATTAAA
*
17564 AATTATAAAAA
1 AATTAT-TAAA
17575 AATTA-TAAGA
1 AATTATTAA-A
* *
17585 GATTGTTAAA
1 AATTATTAAA
17595 AA-TATTAAA
1 AATTATTAAA
17604 AA-TATTTAAA
1 AATTA-TTAAA
*
17614 ACTT-TTAAA
1 AATTATTAAA
*
17623 TATTA
1 AATTA
17628 CAGAAAATTC
Statistics
Matches: 79, Mismatches: 17, Indels: 20
0.68 0.15 0.17
Matches are distributed among these distances:
9 19 0.24
10 35 0.44
11 23 0.29
12 2 0.03
ACGTcount: A:0.58, C:0.03, G:0.05, T:0.34
Consensus pattern (10 bp):
AATTATTAAA
Found at i:17530 original size:21 final size:20
Alignment explanation
Indices: 17506--17606 Score: 64
Period size: 21 Copynumber: 4.9 Consensus size: 20
17496 ATAATTTTTT
17506 TAAAATAATTATTAAAAATTA
1 TAAAA-AATTATTAAAAATTA
**
17527 TAAAGAAATTA-TAGAAAACCAA
1 TAAA-AAATTATTA-AAAA-TTA
* *
17549 TTAAAAATTATTAAGAATTA
1 TAAAAAATTATTAAAAATTA
* *
17569 TAAAAAAATTA-TAAGAGATTG
1 T-AAAAAATTATTAA-AAATTA
*
17590 TTAAAAA-TATTAAAAAT
1 TAAAAAATTATTAAAAAT
17607 ATTTAAAACT
Statistics
Matches: 61, Mismatches: 12, Indels: 16
0.69 0.13 0.18
Matches are distributed among these distances:
19 5 0.08
20 15 0.25
21 34 0.56
22 7 0.11
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.32
Consensus pattern (20 bp):
TAAAAAATTATTAAAAATTA
Found at i:17553 original size:32 final size:31
Alignment explanation
Indices: 17516--17575 Score: 93
Period size: 32 Copynumber: 1.9 Consensus size: 31
17506 TAAAATAATT
*
17516 ATTAAAAATTATAAAGAAATTATAGAAAACCA
1 ATTAAAAATTATAAAG-AATTATAAAAAACCA
*
17548 ATTAAAAATTATTAAGAATTATAAAAAA
1 ATTAAAAATTATAAAGAATTATAAAAAA
17576 ATTATAAGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 11 0.42
32 15 0.58
ACGTcount: A:0.63, C:0.03, G:0.05, T:0.28
Consensus pattern (31 bp):
ATTAAAAATTATAAAGAATTATAAAAAACCA
Found at i:17668 original size:22 final size:22
Alignment explanation
Indices: 17629--17673 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 22
17619 TAAATATTAC
17629 AGAAAATTCTATAATCCTTGTTAT
1 AGAAAATTC-ATAATCCTT-TTAT
17653 AGAAAATTC-TAATCCTTTTAT
1 AGAAAATTCATAATCCTTTTAT
17674 TAATTCTCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 4 0.19
22 8 0.38
24 9 0.43
ACGTcount: A:0.38, C:0.13, G:0.07, T:0.42
Consensus pattern (22 bp):
AGAAAATTCATAATCCTTTTAT
Found at i:35823 original size:25 final size:25
Alignment explanation
Indices: 35789--35847 Score: 109
Period size: 25 Copynumber: 2.4 Consensus size: 25
35779 TTTAATATAC
35789 AAAATATATATTTGATTAAAAATAA
1 AAAATATATATTTGATTAAAAATAA
35814 AAAATATATATTTGATTAAAAATAA
1 AAAATATATATTTGATTAAAAATAA
*
35839 AAAAAATAT
1 AAAATATAT
35848 TTTTTACTCA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (25 bp):
AAAATATATATTTGATTAAAAATAA
Found at i:37000 original size:3 final size:3
Alignment explanation
Indices: 36992--37035 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
36982 TTTTTAAATT
36992 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
37036 TCCATGTACA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:37694 original size:53 final size:53
Alignment explanation
Indices: 37614--37722 Score: 200
Period size: 53 Copynumber: 2.1 Consensus size: 53
37604 TGGGTGTGAC
*
37614 ATTTTCTTCTCCAAAATGAGAGAGTCTTAATGAAAAACTCAATTTAATTAGGG
1 ATTTTCTTCTCCAAAATGAAAGAGTCTTAATGAAAAACTCAATTTAATTAGGG
*
37667 ATTTTCTTCTCTAAAATGAAAGAGTCTTAATGAAAAACTCAATTTAATTAGGG
1 ATTTTCTTCTCCAAAATGAAAGAGTCTTAATGAAAAACTCAATTTAATTAGGG
37720 ATT
1 ATT
37723 ATTTTTTTCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.36
Consensus pattern (53 bp):
ATTTTCTTCTCCAAAATGAAAGAGTCTTAATGAAAAACTCAATTTAATTAGGG
Found at i:43160 original size:44 final size:43
Alignment explanation
Indices: 43112--43338 Score: 174
Period size: 44 Copynumber: 5.2 Consensus size: 43
43102 GACAACAGAT
*
43112 CTTGCCTTCCTGTACCGACAGTGAAGCAGATCAAAGATACCAGC
1 CTTGCCTTCCTGTA-CGACAGTGAAGCAGATCGAAGATACCAGC
* * * * * * * *
43156 CTTGCCTCCCTAAGT-TG-TAGTGGAGCAGGTGGAAGATAGCAGAT
1 CTTGCCTTCCT--GTACGACAGTGAAGCAGATCGAAGATACCAG-C
* *
43200 ATTGCCTTCCTATATCGACAGTGAAGCAGATCGAAGATACCAGC
1 CTTGCCTTCCTGTA-CGACAGTGAAGCAGATCGAAGATACCAGC
* * * * * * * *
43244 CTTGCCTCCCTAGGT-TG-TAGTGGAGCAGGTTGAAGATAGCAGAT
1 CTTGCCTTCCT--GTACGACAGTGAAGCAGATCGAAGATACCAG-C
43288 CTTGCCTTCCTGTACCGACAGTGAAGCAGATCGAAGATACCAGC
1 CTTGCCTTCCTGTA-CGACAGTGAAGCAGATCGAAGATACCAGC
43332 CTTGCCT
1 CTTGCCT
43339 CCCTAGGTTG
Statistics
Matches: 134, Mismatches: 37, Indels: 24
0.69 0.19 0.12
Matches are distributed among these distances:
42 3 0.02
43 39 0.29
44 49 0.37
45 40 0.30
46 3 0.02
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.24
Consensus pattern (43 bp):
CTTGCCTTCCTGTACGACAGTGAAGCAGATCGAAGATACCAGC
Found at i:43192 original size:43 final size:43
Alignment explanation
Indices: 43131--43369 Score: 187
Period size: 43 Copynumber: 5.5 Consensus size: 43
43121 CTGTACCGAC
* * *
43131 AGTGAAGCAGATCAAAGATACCAGCCTTGCCTCCCTAAGTTGT
1 AGTGGAGCAGGTCGAAGATACCAGCCTTGCCTCCCTAAGTTGT
* * ** * * *
43174 AGTGGAGCAGGTGGAAGATAGCAGATATTGCCTTCCTATA-TCGAC
1 AGTGGAGCAGGTCGAAGATACCAG-CCTTGCCTCCCTA-AGTTG-T
* * *
43219 AGTGAAGCAGATCGAAGATACCAGCCTTGCCTCCCTAGGTTGT
1 AGTGGAGCAGGTCGAAGATACCAGCCTTGCCTCCCTAAGTTGT
* * * * * *
43262 AGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCT--GTACCGAC
1 AGTGGAGCAGGTCGAAGATACCAG-CCTTGCCTCCCTAAGT--TG-T
* * *
43307 AGTGAAGCAGATCGAAGATACCAGCCTTGCCTCCCTAGGTTGT
1 AGTGGAGCAGGTCGAAGATACCAGCCTTGCCTCCCTAAGTTGT
*
43350 AGTGGAGCAGGTTGAAGATA
1 AGTGGAGCAGGTCGAAGATA
43370 NNNNNNNNNN
Statistics
Matches: 147, Mismatches: 39, Indels: 20
0.71 0.19 0.10
Matches are distributed among these distances:
42 2 0.01
43 56 0.38
44 46 0.31
45 41 0.28
46 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (43 bp):
AGTGGAGCAGGTCGAAGATACCAGCCTTGCCTCCCTAAGTTGT
Found at i:43199 original size:88 final size:88
Alignment explanation
Indices: 43050--43369 Score: 523
Period size: 88 Copynumber: 3.6 Consensus size: 88
43040 CCTCAGAGAA
* * * ** * *
43050 CAGATCGAAGATACCAGCCTTGCCTCTCTGGGTTATAGCAGAGCAGGTTGAAGACAACAGATCTT
1 CAGATCGAAGATACCAGCCTTGCCTCCCTAGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTT
43115 GCCTTCCTGTACCGACAGTGAAG
66 GCCTTCCTGTACCGACAGTGAAG
* * * *
43138 CAGATCAAAGATACCAGCCTTGCCTCCCTAAGTTGTAGTGGAGCAGGTGGAAGATAGCAGATATT
1 CAGATCGAAGATACCAGCCTTGCCTCCCTAGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTT
* *
43203 GCCTTCCTATATCGACAGTGAAG
66 GCCTTCCTGTACCGACAGTGAAG
43226 CAGATCGAAGATACCAGCCTTGCCTCCCTAGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTT
1 CAGATCGAAGATACCAGCCTTGCCTCCCTAGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTT
43291 GCCTTCCTGTACCGACAGTGAAG
66 GCCTTCCTGTACCGACAGTGAAG
43314 CAGATCGAAGATACCAGCCTTGCCTCCCTAGGTTGTAGTGGAGCAGGTTGAAGATA
1 CAGATCGAAGATACCAGCCTTGCCTCCCTAGGTTGTAGTGGAGCAGGTTGAAGATA
43370 NNNNNNNNNN
Statistics
Matches: 213, Mismatches: 19, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
88 213 1.00
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.23
Consensus pattern (88 bp):
CAGATCGAAGATACCAGCCTTGCCTCCCTAGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTT
GCCTTCCTGTACCGACAGTGAAG
Found at i:45119 original size:3 final size:3
Alignment explanation
Indices: 45111--45154 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
45101 TTTTTAAATT
45111 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
45155 TCCATGTACA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:48783 original size:21 final size:22
Alignment explanation
Indices: 48757--48806 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 22
48747 CTACAACTTA
*
48757 AAGCAGAGA-CGGCAGCGAGGG
1 AAGCAGAGAGCGGCAGCGAGAG
*
48778 AAGCAGA-AGCTGCAGCGAGAG
1 AAGCAGAGAGCGGCAGCGAGAG
48799 AAGCAGAG
1 AAGCAGAG
48807 CAGGCCAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 1 0.04
21 24 0.96
ACGTcount: A:0.38, C:0.18, G:0.42, T:0.02
Consensus pattern (22 bp):
AAGCAGAGAGCGGCAGCGAGAG
Found at i:49232 original size:42 final size:42
Alignment explanation
Indices: 49209--49452 Score: 382
Period size: 42 Copynumber: 5.8 Consensus size: 42
49199 TAAGAATAAA
* *
49209 CGCCGCTAAAGTACATGGTCTTTAGCGGCGTCTTTTTCTAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAG
* *
49251 CGCCGTTAAAGCACATGGTCTTTAGCGGCGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAG
* * *
49293 CGCCGCTAAAGAACATTGTCTTTAGCGGCATTTTTTCCTAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAG
* *
49335 CGCCGCTAAAGAACATGGTCTTTAGAGGCGTTTTTTTGTAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAG
* *
49377 CGCCGCTAAATAACATTGTCTTTAGCGGCGTTTTTTT-TAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAG
49418 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTT
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTT
49453 GTTTGTAAAC
Statistics
Matches: 184, Mismatches: 18, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
41 37 0.20
42 147 0.80
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.34
Consensus pattern (42 bp):
CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAG
Found at i:57892 original size:12 final size:12
Alignment explanation
Indices: 57871--57914 Score: 61
Period size: 12 Copynumber: 3.7 Consensus size: 12
57861 AATATAGTAT
*
57871 TTATTTTTCTTA
1 TTATTATTCTTA
*
57883 TTCTTATTCTTA
1 TTATTATTCTTA
*
57895 TTATTATTATTA
1 TTATTATTCTTA
57907 TTATTATT
1 TTATTATT
57915 ATTTCCATGT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.23, C:0.07, G:0.00, T:0.70
Consensus pattern (12 bp):
TTATTATTCTTA
Found at i:57900 original size:3 final size:3
Alignment explanation
Indices: 57880--57917 Score: 58
Period size: 3 Copynumber: 12.7 Consensus size: 3
57870 TTTATTTTTC
* *
57880 TTA TTC TTA TTC TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
57918 TCCATGTACA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:59054 original size:16 final size:16
Alignment explanation
Indices: 59029--59063 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
59019 TTGTGTTCTG
59029 TTTTGGCTGCATGACA
1 TTTTGGCTGCATGACA
*
59045 TTTTGTCTGCATGACA
1 TTTTGGCTGCATGACA
59061 TTT
1 TTT
59064 CATCATAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.17, C:0.17, G:0.20, T:0.46
Consensus pattern (16 bp):
TTTTGGCTGCATGACA
Found at i:62170 original size:48 final size:48
Alignment explanation
Indices: 62080--62171 Score: 112
Period size: 48 Copynumber: 1.9 Consensus size: 48
62070 AAGGAGAAGG
* * * * **
62080 GACCAAGGTGAAAACCCGCAAATGGCGTTTTGATTCTTAAAAAAAAAA
1 GACCAAGGTGAAAACCCACAAAGGGCGCTTTGAGTCCAAAAAAAAAAA
* *
62128 GACCAAGGTGAAAACTCACAAAGGGCGCTTTGGGTCCAAAAAAA
1 GACCAAGGTGAAAACCCACAAAGGGCGCTTTGAGTCCAAAAAAA
62172 TAATAATAAA
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
48 36 1.00
ACGTcount: A:0.42, C:0.18, G:0.22, T:0.17
Consensus pattern (48 bp):
GACCAAGGTGAAAACCCACAAAGGGCGCTTTGAGTCCAAAAAAAAAAA
Found at i:63546 original size:45 final size:45
Alignment explanation
Indices: 63486--63888 Score: 545
Period size: 45 Copynumber: 9.0 Consensus size: 45
63476 GTCTGAAAAG
*
63486 AGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGAT
* * * * *
63531 AGCAAATCTTATCTTCTTGTATTGGCAGTGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGAT
* * *
63576 AACAAATCTTGTCTTCCTGTATCGGCAGCGAAGTAGATCAAAGAT
1 AGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGAT
* * * *
63621 AGTAGATCTTGTCTTCCTATATTGGTAGAGAAGTAGATCAAAGAT
1 AGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGAT
*
63666 AGCAGATCTTGTCTTCCTGTATCGGCAGCGAAGTAGATCAAAGAT
1 AGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGAT
* * * *
63711 AGCAGATATTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGAT
* * * * * *
63756 AGCAGATCTCGTCTTCCTATATTGGTAGTGAAGTATATCGAAGAT
1 AGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGAT
* *
63801 AACAGATCTTGTCTTCCTGTATTGGCAGTGAAGTAGATCAAAGAT
1 AGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGAT
* * *
63846 AACAGATCTTGTCTTCCTGTATTGGCAGCAAAGTATATCAAAG
1 AGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAG
63889 CGAAGCAGGT
Statistics
Matches: 318, Mismatches: 40, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 318 1.00
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.31
Consensus pattern (45 bp):
AGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGAT
Found at i:65047 original size:4 final size:4
Alignment explanation
Indices: 65033--65078 Score: 51
Period size: 4 Copynumber: 12.0 Consensus size: 4
65023 TTCGATTTTG
* * *
65033 TTTA CTTA TTTA TTTA TTTA TTT- TTGA TTTT TTTA TTT- TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
65079 CTTAAAATAT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
3 5 0.15
4 29 0.85
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:65067 original size:15 final size:15
Alignment explanation
Indices: 65026--65077 Score: 52
Period size: 15 Copynumber: 3.3 Consensus size: 15
65016 GTGGGTGTTC
65026 GATTTTGTTTACTTATTT
1 GATTTT-TTTA-TT-TTT
*
65044 -ATTTATTTATTTTT
1 GATTTTTTTATTTTT
65058 GATTTTTTTATTTTT
1 GATTTTTTTATTTTT
*
65073 TATTT
1 GATTT
65078 ACTTAAAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
14 3 0.10
15 19 0.63
16 4 0.13
17 4 0.13
ACGTcount: A:0.17, C:0.02, G:0.06, T:0.75
Consensus pattern (15 bp):
GATTTTTTTATTTTT
Found at i:94533 original size:20 final size:21
Alignment explanation
Indices: 94467--94535 Score: 95
Period size: 21 Copynumber: 3.3 Consensus size: 21
94457 TCACTTCGTT
94467 TCTTTTTGTCCAAGTTACTTC
1 TCTTTTTGTCCAAGTTACTTC
*
94488 TCTTTTTGTCCAAGTTGCTTC
1 TCTTTTTGTCCAAGTTACTTC
* * *
94509 TCTTTTTGTCTAACTCACTTC
1 TCTTTTTGTCCAAGTTACTTC
94530 -CTTTTT
1 TCTTTTT
94536 TCTTTGTGAG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 6 0.14
21 37 0.86
ACGTcount: A:0.12, C:0.25, G:0.09, T:0.55
Consensus pattern (21 bp):
TCTTTTTGTCCAAGTTACTTC
Found at i:101105 original size:497 final size:497
Alignment explanation
Indices: 100171--110368 Score: 20371
Period size: 497 Copynumber: 20.5 Consensus size: 497
100161 CCGCCGCCCG
100171 AATTCGCAATTTCTCATGCTCATAATTTAAATCATATCACTAGCAATTTCCATTTAATTCACGTA
1 AATTCGCAATTTCTCATGCTCATAATTTAAATCATATCACTAGCAATTTCCATTTAATTCACGTA
100236 CAATTCAATGACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTA
66 CAATTCAATGACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTA
100301 TACCATTCAATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAAT
131 TACCATTCAATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAAT
100366 AACAACATCGTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAA
196 AACAACATCGTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAA
100431 CCCCCCTTCCCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTA
261 CCCCCCTTCCCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTA
100496 AACGTATTTAACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTT
326 AACGTATTTAACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTT
100561 CTATAACTTTTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCG
391 CTATAACTTTTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCG
100626 ATACATACTCATGCAATTTAATGCTTCATTTCCATTTCATTC
456 ATACATACTCATGCAATTTAATGCTTCATTTCCATTTCATTC
100668 AATTCGCAATTTCTCATGCTCATAATTTAAATCATATCACTAGCAATTTCCATTTAATTCACGTA
1 AATTCGCAATTTCTCATGCTCATAATTTAAATCATATCACTAGCAATTTCCATTTAATTCACGTA
100733 CAATTCAATGACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTA
66 CAATTCAATGACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTA
100798 TACCATTCAATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAAT
131 TACCATTCAATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAAT
100863 AACAACATCGTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAA
196 AACAACATCGTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAA
100928 CCCCCCTTCCCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTA
261 CCCCCCTTCCCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTA
100993 AACGTATTTAACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTT
326 AACGTATTTAACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTT
101058 CTATAACTTTTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCG
391 CTATAACTTTTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCG
101123 ATACATACTCATGCAATTTAATGCTTCATTTCCATTTCATTC
456 ATACATACTCATGCAATTTAATGCTTCATTTCCATTTCATTC
101165 AATTCGCAATTTCTCATGCTCATAATTTAAATCATATCACTAGCAATTTCCATTTAATTCACGTA
1 AATTCGCAATTTCTCATGCTCATAATTTAAATCATATCACTAGCAATTTCCATTTAATTCACGTA
101230 CAATTCAATGACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTA
66 CAATTCAATGACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTA
101295 TACCATTCAATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAAT
131 TACCATTCAATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAAT
101360 AACAACATCGTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAA
196 AACAACATCGTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAA
101425 CCCCCCTTCCCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTA
261 CCCCCCTTCCCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTA
101490 AACGTATTTAACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTT
326 AACGTATTTAACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTT
101555 CTATAACTTTTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCG
391 CTATAACTTTTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCG
101620 ATACATACTCATGCAATTTAATGCTTCATTTCCATTTCATTC
456 ATACATACTCATGCAATTTAATGCTTCATTTCCATTTCATTC
101662 AATTCGCAATTTCTCATGCTCATAATTTAAATCATATCACTAGCAATTTCCATTTAATTCACGTA
1 AATTCGCAATTTCTCATGCTCATAATTTAAATCATATCACTAGCAATTTCCATTTAATTCACGTA
101727 CAATTCAATGACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTA
66 CAATTCAATGACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTA
101792 TACCATTCAATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAAT
131 TACCATTCAATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAAT
101857 AACAACATCGTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAA
196 AACAACATCGTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAA
101922 CCCCCCTTCCCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTA
261 CCCCCCTTCCCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTA
101987 AACGTATTTAACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTT
326 AACGTATTTAACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTT
102052 CTATAACTTTTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCG
391 CTATAACTTTTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCG
102117 ATACATACTCATGCAATTTAATGCTTCATTTCCATTTCATTC
456 ATACATACTCATGCAATTTAATGCTTCATTTCCATTTCATTC
102159 AATTCGCAATTTCTCATGCTCATAATTTAAATCATATCACTAGCAATTTCCATTTAATTCACGTA
1 AATTCGCAATTTCTCATGCTCATAATTTAAATCATATCACTAGCAATTTCCATTTAATTCACGTA
102224 CAATTCAATGACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTA
66 CAATTCAATGACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTA
102289 TACCATTCAATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAAT
131 TACCATTCAATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAAT
102354 AACAACATCGTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAA
196 AACAACATCGTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAA
102419 CCCCCCTTCCCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTA
261 CCCCCCTTCCCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTA
102484 AACGTATTTAACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTT
326 AACGTATTTAACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTT
102549 CTATAACTTTTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCG
391 CTATAACTTTTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCG
102614 ATACATACTCATGCAATTTAATGCTTCATTTCCATTTCATTC
456 ATACATACTCATGCAATTTAATGCTTCATTTCCATTTCATTC
102656 AATTCGCAATTTCTCATGCTCATAATTTAAATCATATCACTAGCAATTTCCATTTAATTCACGTA
1 AATTCGCAATTTCTCATGCTCATAATTTAAATCATATCACTAGCAATTTCCATTTAATTCACGTA
102721 CAATTCAATGACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTA
66 CAATTCAATGACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTA
102786 TACCATTCAATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAAT
131 TACCATTCAATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAAT
102851 AACAACATCGTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAA
196 AACAACATCGTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAA
102916 CCCCCCTTCCCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTA
261 CCCCCCTTCCCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTA
102981 AACGTATTTAACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTT
326 AACGTATTTAACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTT
103046 CTATAACTTTTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCG
391 CTATAACTTTTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCG
103111 ATACATACTCATGCAATTTAATGCTTCATTTCCATTTCATTC
456 ATACATACTCATGCAATTTAATGCTTCATTTCCATTTCATTC
103153 AATTCGCAATTTCTCATGCTCATAATTTAAATCATATCACTAGCAATTTCCATTTAATTCACGTA
1 AATTCGCAATTTCTCATGCTCATAATTTAAATCATATCACTAGCAATTTCCATTTAATTCACGTA
103218 CAATTCAATGACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTA
66 CAATTCAATGACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTA
103283 TACCATTCAATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAAT
131 TACCATTCAATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAAT
103348 AACAACATCGTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAA
196 AACAACATCGTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAA
103413 CCCCCCTTCCCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTA
261 CCCCCCTTCCCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTA
103478 AACGTATTTAACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTT
326 AACGTATTTAACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTT
103543 CTATAACTTTTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCG
391 CTATAACTTTTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCG
103608 ATACATACTCATGCAATTTAATGCTTCATTTCCATTTCATTC
456 ATACATACTCATGCAATTTAATGCTTCATTTCCATTTCATTC
103650 AATTCGCAATTTCTCATGCTCATAATTTAAATCATATCACTAGCAATTTCCATTTAATTCACGTA
1 AATTCGCAATTTCTCATGCTCATAATTTAAATCATATCACTAGCAATTTCCATTTAATTCACGTA
103715 CAATTCAATGACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTA
66 CAATTCAATGACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTA
103780 TACCATTCAATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAAT
131 TACCATTCAATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAAT
103845 AACAACATCGTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAA
196 AACAACATCGTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAA
103910 CCCCCCTTCCCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTA
261 CCCCCCTTCCCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTA
103975 AACGTATTTAACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTT
326 AACGTATTTAACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTT
104040 CTATAACTTTTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCG
391 CTATAACTTTTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCG
104105 ATACATACTCATGCAATTTAATGCTTCATTTCCATTTCATTC
456 ATACATACTCATGCAATTTAATGCTTCATTTCCATTTCATTC
104147 AATTCGCAATTTCTCATGCTCATAATTTAAATCATATCACTAGCAATTTCCATTTAATTCACGTA
1 AATTCGCAATTTCTCATGCTCATAATTTAAATCATATCACTAGCAATTTCCATTTAATTCACGTA
104212 CAATTCAATGACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTA
66 CAATTCAATGACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTA
104277 TACCATTCAATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAAT
131 TACCATTCAATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAAT
104342 AACAACATCGTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAA
196 AACAACATCGTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAA
104407 CCCCCCTTCCCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTA
261 CCCCCCTTCCCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTA
104472 AACGTATTTAACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTT
326 AACGTATTTAACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTT
104537 CTATAACTTTTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCG
391 CTATAACTTTTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCG
104602 ATACATACTCATGCAATTTAATGCTTCATTTCCATTTCATTC
456 ATACATACTCATGCAATTTAATGCTTCATTTCCATTTCATTC
104644 AATTCGCAATTTCTCATGCTCATAATTTAAATCATATCACTAGCAATTTCCATTTAATTCACGTA
1 AATTCGCAATTTCTCATGCTCATAATTTAAATCATATCACTAGCAATTTCCATTTAATTCACGTA
104709 CAATTCAATGACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTA
66 CAATTCAATGACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTA
104774 TACCATTCAATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAAT
131 TACCATTCAATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAAT
104839 AACAACATCGTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAA
196 AACAACATCGTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAA
104904 CCCCCCTTCCCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTA
261 CCCCCCTTCCCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTA
104969 AACGTATTTAACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTT
326 AACGTATTTAACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTT
105034 CTATAACTTTTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCG
391 CTATAACTTTTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCG
105099 ATACATACTCATGCAATTTAATGCTTCATTTCCATTTCATTC
456 ATACATACTCATGCAATTTAATGCTTCATTTCCATTTCATTC
105141 AATTCGCAATTTCTCATGCTCATAATTTAAATCATATCACTAGCAATTTCCATTTAATTCACGTA
1 AATTCGCAATTTCTCATGCTCATAATTTAAATCATATCACTAGCAATTTCCATTTAATTCACGTA
105206 CAATTCAATGACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTA
66 CAATTCAATGACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTA
105271 TACCATTCAATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAAT
131 TACCATTCAATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAAT
105336 AACAACATCGTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAA
196 AACAACATCGTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAA
105401 CCCCCCTTCCCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTA
261 CCCCCCTTCCCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTA
105466 AACGTATTTAACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTT
326 AACGTATTTAACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTT
105531 CTATAACTTTTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCG
391 CTATAACTTTTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCG
105596 ATACATACTCATGCAATTTAATGCTTCATTTCCATTTCATTC
456 ATACATACTCATGCAATTTAATGCTTCATTTCCATTTCATTC
105638 AATTCGCAATTTCTCATGCTCATAATTTAAATCATATCACTAGCAATTTCCATTTAATTCACGTA
1 AATTCGCAATTTCTCATGCTCATAATTTAAATCATATCACTAGCAATTTCCATTTAATTCACGTA
105703 CAATTCAATGACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTA
66 CAATTCAATGACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTA
105768 TACCATTCAATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAAT
131 TACCATTCAATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAAT
105833 AACAACATCGTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAA
196 AACAACATCGTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAA
105898 CCCCCCTTCCCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTA
261 CCCCCCTTCCCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTA
105963 AACGTATTTAACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTT
326 AACGTATTTAACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTT
106028 CTATAACTTTTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCG
391 CTATAACTTTTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCG
106093 ATACATACTCATGCAATTTAATGCTTCATTTCCATTTCATTC
456 ATACATACTCATGCAATTTAATGCTTCATTTCCATTTCATTC
106135 AATTCGCAATTTCTCATGCTCATAATTTAAATCATATCACTAGCAATTTCCATTTAATTCACGTA
1 AATTCGCAATTTCTCATGCTCATAATTTAAATCATATCACTAGCAATTTCCATTTAATTCACGTA
106200 CAATTCAATGACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTA
66 CAATTCAATGACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTA
106265 TACCATTCAATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAAT
131 TACCATTCAATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAAT
106330 AACAACATCGTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAA
196 AACAACATCGTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAA
106395 CCCCCCTTCCCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTA
261 CCCCCCTTCCCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTA
106460 AACGTATTTAACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTT
326 AACGTATTTAACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTT
106525 CTATAACTTTTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCG
391 CTATAACTTTTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCG
106590 ATACATACTCATGCAATTTAATGCTTCATTTCCATTTCATTC
456 ATACATACTCATGCAATTTAATGCTTCATTTCCATTTCATTC
106632 AATTCGCAATTTCTCATGCTCATAATTTAAATCATATCACTAGCAATTTCCATTTAATTCACGTA
1 AATTCGCAATTTCTCATGCTCATAATTTAAATCATATCACTAGCAATTTCCATTTAATTCACGTA
106697 CAATTCAATGACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTA
66 CAATTCAATGACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTA
106762 TACCATTCAATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAAT
131 TACCATTCAATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAAT
106827 AACAACATCGTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAA
196 AACAACATCGTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAA
106892 CCCCCCTTCCCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTA
261 CCCCCCTTCCCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTA
106957 AACGTATTTAACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTT
326 AACGTATTTAACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTT
107022 CTATAACTTTTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCG
391 CTATAACTTTTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCG
107087 ATACATACTCATGCAATTTAATGCTTCATTTCCATTTCATTC
456 ATACATACTCATGCAATTTAATGCTTCATTTCCATTTCATTC
107129 AATTCGCAATTTCTCATGCTCATAATTTAAATCATATCACTAGCAATTTCCATTTAATTCACGTA
1 AATTCGCAATTTCTCATGCTCATAATTTAAATCATATCACTAGCAATTTCCATTTAATTCACGTA
107194 CAATTCAATGACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTA
66 CAATTCAATGACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTA
107259 TACCATTCAATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAAT
131 TACCATTCAATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAAT
107324 AACAACATCGTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAA
196 AACAACATCGTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAA
107389 CCCCCCTTCCCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTA
261 CCCCCCTTCCCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTA
107454 AACGTATTTAACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTT
326 AACGTATTTAACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTT
107519 CTATAACTTTTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCG
391 CTATAACTTTTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCG
107584 ATACATACTCATGCAATTTAATGCTTCATTTCCATTTCATTC
456 ATACATACTCATGCAATTTAATGCTTCATTTCCATTTCATTC
107626 AATTCGCAATTTCTCATGCTCATAATTTAAATCATATCACTAGCAATTTCCATTTAATTCACGTA
1 AATTCGCAATTTCTCATGCTCATAATTTAAATCATATCACTAGCAATTTCCATTTAATTCACGTA
107691 CAATTCAATGACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTA
66 CAATTCAATGACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTA
107756 TACCATTCAATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAAT
131 TACCATTCAATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAAT
107821 AACAACATCGTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAA
196 AACAACATCGTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAA
107886 CCCCCCTTCCCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTA
261 CCCCCCTTCCCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTA
107951 AACGTATTTAACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTT
326 AACGTATTTAACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTT
108016 CTATAACTTTTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCG
391 CTATAACTTTTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCG
108081 ATACATACTCATGCAATTTAATGCTTCATTTCCATTTCATTC
456 ATACATACTCATGCAATTTAATGCTTCATTTCCATTTCATTC
108123 AATTCGCAATTTCTCATGCTCATAATTTAAATCATATCACTAGCAATTTCCATTTAATTCACGTA
1 AATTCGCAATTTCTCATGCTCATAATTTAAATCATATCACTAGCAATTTCCATTTAATTCACGTA
108188 CAATTCAATGACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTA
66 CAATTCAATGACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTA
108253 TACCATTCAATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAAT
131 TACCATTCAATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAAT
108318 AACAACATCGTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAA
196 AACAACATCGTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAA
108383 CCCCCCTTCCCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTA
261 CCCCCCTTCCCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTA
108448 AACGTATTTAACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTT
326 AACGTATTTAACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTT
108513 CTATAACTTTTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCG
391 CTATAACTTTTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCG
108578 ATACATACTCATGCAATTTAATGCTTCATTTCCATTTCATTC
456 ATACATACTCATGCAATTTAATGCTTCATTTCCATTTCATTC
108620 AATTCGCAATTTCTCATGCTCATAATTTAAATCATATCACTAGCAATTTCCATTTAATTCACGTA
1 AATTCGCAATTTCTCATGCTCATAATTTAAATCATATCACTAGCAATTTCCATTTAATTCACGTA
108685 CAATTCAATGACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTA
66 CAATTCAATGACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTA
108750 TACCATTCAATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAAT
131 TACCATTCAATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAAT
108815 AACAACATCGTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAA
196 AACAACATCGTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAA
108880 CCCCCCTTCCCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTA
261 CCCCCCTTCCCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTA
108945 AACGTATTTAACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTT
326 AACGTATTTAACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTT
109010 CTATAACTTTTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCG
391 CTATAACTTTTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCG
109075 ATACATACTCATGCAATTTAATGCTTCATTTCCATTTCATTC
456 ATACATACTCATGCAATTTAATGCTTCATTTCCATTTCATTC
109117 AATTCGCAATTTCTCATGCTCATAATTTAAATCATATCACTAGCAATTTCCATTTAATTCACGTA
1 AATTCGCAATTTCTCATGCTCATAATTTAAATCATATCACTAGCAATTTCCATTTAATTCACGTA
109182 CAATTCAATGACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTA
66 CAATTCAATGACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTA
109247 TACCATTCAATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAAT
131 TACCATTCAATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAAT
109312 AACAACATCGTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAA
196 AACAACATCGTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAA
109377 CCCCCCTTCCCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTA
261 CCCCCCTTCCCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTA
109442 AACGTATTTAACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTT
326 AACGTATTTAACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTT
109507 CTATAACTTTTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCG
391 CTATAACTTTTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCG
109572 ATACATACTCATGCAATTTAATGCTTCATTTCCATTTCATTC
456 ATACATACTCATGCAATTTAATGCTTCATTTCCATTTCATTC
109614 AATTCGCAATTTCTCATGCTCATAATTTAAATCATATCACTAGCAATTTCCATTTAATTCACGTA
1 AATTCGCAATTTCTCATGCTCATAATTTAAATCATATCACTAGCAATTTCCATTTAATTCACGTA
109679 CAATTCAATGACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTA
66 CAATTCAATGACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTA
109744 TACCATTCAATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAAT
131 TACCATTCAATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAAT
109809 AACAACATCGTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAA
196 AACAACATCGTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAA
109874 CCCCCCTTCCCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTA
261 CCCCCCTTCCCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTA
109939 AACGTATTTAACCGAGTTATAAAATTTCATCAAAATTAAAACTTTC-AAAATAATTAACATGTTT
326 AACGTATTTAACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTT
*
110003 CTATAACTTTTCACAATATATCCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCG
391 CTATAACTTTTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCG
110068 ATACATACTCATGCAATTTAATGCTTCATTTCCATTTCATTC
456 ATACATACTCATGCAATTTAATGCTTCATTTCCATTTCATTC
*
110110 AATTCGCAATTTCTCATGTTCATAATTTAAATCATATCACTAGCAATTTCCATTTAATTCACGTA
1 AATTCGCAATTTCTCATGCTCATAATTTAAATCATATCACTAGCAATTTCCATTTAATTCACGTA
110175 CAATTCAATGACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTA
66 CAATTCAATGACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTA
110240 TACCATTCAATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAAT
131 TACCATTCAATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAAT
110305 AACAACATCGTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCA
196 AACAACATCGTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCA
110369 TTTGTCACTT
Statistics
Matches: 9699, Mismatches: 2, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
496 382 0.04
497 9317 0.96
ACGTcount: A:0.36, C:0.21, G:0.08, T:0.34
Consensus pattern (497 bp):
AATTCGCAATTTCTCATGCTCATAATTTAAATCATATCACTAGCAATTTCCATTTAATTCACGTA
CAATTCAATGACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTA
TACCATTCAATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAAT
AACAACATCGTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAA
CCCCCCTTCCCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTA
AACGTATTTAACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTT
CTATAACTTTTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCG
ATACATACTCATGCAATTTAATGCTTCATTTCCATTTCATTC
Found at i:110530 original size:37 final size:37
Alignment explanation
Indices: 110469--110734 Score: 392
Period size: 37 Copynumber: 7.0 Consensus size: 37
110459 TACGTATGAT
* *
110469 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
110504 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
110541 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
110578 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
110615 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
110652 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAA--GT-G-T--AGC
*
110695 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 ---CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
110735 TAAAGCTATC
Statistics
Matches: 215, Mismatches: 5, Indels: 17
0.91 0.02 0.07
Matches are distributed among these distances:
35 9 0.04
36 3 0.01
37 159 0.74
39 2 0.01
40 4 0.02
41 1 0.00
42 1 0.00
43 4 0.02
44 2 0.01
46 30 0.14
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:110705 original size:46 final size:46
Alignment explanation
Indices: 110652--111064 Score: 520
Period size: 46 Copynumber: 8.6 Consensus size: 46
110642 TAAGTGTAGC
* *
110652 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
* *
110698 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
* * * *
110744 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGTAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
110790 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
* *
110842 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
*
110888 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
* *
110940 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
* * *
110986 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
111038 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
111065 AGTACTCAAA
Statistics
Matches: 327, Mismatches: 22, Indels: 36
0.85 0.06 0.09
Matches are distributed among these distances:
46 198 0.61
48 2 0.01
49 2 0.01
50 2 0.01
52 123 0.38
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.36
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
Found at i:110852 original size:98 final size:98
Alignment explanation
Indices: 110652--111064 Score: 667
Period size: 98 Copynumber: 4.3 Consensus size: 98
110642 TAAGTGTAGC
* * **
110652 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCAC--T----TT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTT
*
110711 GTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
66 GTCACTTGATCAGATAAGTGTAGCTAAAGCTAT
* * *
110744 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGTAGCTATCACTTATCACTTTTCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTT
*
110809 GTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
66 GTCACTTGATCAGATAAGTGTAGCTAAAGCTAT
*
110842 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTT
*
110907 GTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
66 GTCACTTGATCAGATAAGTGTAGCTAAAGCTAT
*
110940 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTT
*
111005 GTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
66 GTCACTTGATCAGATAAGTGTAGCTAAAGCTAT
111038 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
111065 AGTACTCAAA
Statistics
Matches: 303, Mismatches: 12, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
92 52 0.17
94 1 0.00
98 250 0.83
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.36
Consensus pattern (98 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTT
GTCACTTGATCAGATAAGTGTAGCTAAAGCTAT
Found at i:123264 original size:5 final size:5
Alignment explanation
Indices: 123254--123279 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
123244 TTTACTAAGA
123254 TATTT TATTT TATTT TATTT TATTT T
1 TATTT TATTT TATTT TATTT TATTT T
123280 TAATATTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TATTT
Found at i:127600 original size:31 final size:31
Alignment explanation
Indices: 127565--127641 Score: 102
Period size: 31 Copynumber: 2.5 Consensus size: 31
127555 CAAACGATAT
* *
127565 AAAAATTATTAGAAATTC-TAAAATATTGTAA
1 AAAAATTATTA-AAAATCATAAAAGATTGTAA
*
127596 AAAAATTATTAAAAATCATCAAAGATTGTAA
1 AAAAATTATTAAAAATCATAAAAGATTGTAA
*
127627 AAGAATTATTAAAAA
1 AAAAATTATTAAAAA
127642 ATTTAAAAAC
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
30 5 0.12
31 36 0.88
ACGTcount: A:0.58, C:0.04, G:0.06, T:0.31
Consensus pattern (31 bp):
AAAAATTATTAAAAATCATAAAAGATTGTAA
Found at i:127896 original size:35 final size:34
Alignment explanation
Indices: 127850--127926 Score: 111
Period size: 35 Copynumber: 2.2 Consensus size: 34
127840 CAAAAGATAC
*
127850 AAAAATTATTAGAAATTC-TAAAATATTGTAAAAA
1 AAAAATTATTAGAAA-TCATAAAAGATTGTAAAAA
127884 AAAAATTTATTAGAAATCATAAAAGATTGTAAAAA
1 AAAAA-TTATTAGAAATCATAAAAGATTGTAAAAA
*
127919 AAATATTA
1 AAAAATTA
127927 AATTTTTTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
34 10 0.26
35 29 0.74
ACGTcount: A:0.60, C:0.03, G:0.06, T:0.31
Consensus pattern (34 bp):
AAAAATTATTAGAAATCATAAAAGATTGTAAAAA
Found at i:128686 original size:18 final size:18
Alignment explanation
Indices: 128649--128687 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
128639 ATTTTATTTT
*
128649 ATTTTTACATTTTTATAG
1 ATTTTTACATTTTTACAG
128667 ATTTTTAACATTTTT-CAG
1 ATTTTT-ACATTTTTACAG
128685 ATT
1 ATT
128688 ATGACATCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.28, C:0.08, G:0.05, T:0.59
Consensus pattern (18 bp):
ATTTTTACATTTTTACAG
Found at i:129506 original size:2 final size:2
Alignment explanation
Indices: 129499--129524 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
129489 AGATGATGTA
129499 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
129525 GAAGAATGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:130566 original size:192 final size:192
Alignment explanation
Indices: 130239--130629 Score: 764
Period size: 192 Copynumber: 2.0 Consensus size: 192
130229 TTCTTCAACT
130239 AATCTAATTATTAGTTTGGATTTGGATTTAACGTAAAGTGTATTTAAAACAAGTAGATGGAATTT
1 AATCTAATTATTAGTTTGGATTTGGATTTAACGTAAAGTGTATTTAAAACAAGTAGATGGAATTT
*
130304 TAAACATATGTATAGTTACTTTGTGGGACAATTTGGATTTCATATTTTAAGAAAAATGTAATGAT
66 TAAACATATGTATAGTTACTTTGTGGGACAAATTGGATTTCATATTTTAAGAAAAATGTAATGAT
*
130369 GCTTAAGCTGTTTATGTAATAGATACACAATATTTAAAATTTAATCCAATGCTGAGAAATTC
131 GCTTAAGCGGTTTATGTAATAGATACACAATATTTAAAATTTAATCCAATGCTGAGAAATTC
130431 AATCTAATTATTAGTTTGGATTTGGATTTAACGTAAAGTGTATTTAAAACAAGTAGATGGAATTT
1 AATCTAATTATTAGTTTGGATTTGGATTTAACGTAAAGTGTATTTAAAACAAGTAGATGGAATTT
130496 TAAACATATGTATAGTTACTTTGTGGGACAAATTGGATTTCATATTTTAAGAAAAATGTAATGAT
66 TAAACATATGTATAGTTACTTTGTGGGACAAATTGGATTTCATATTTTAAGAAAAATGTAATGAT
130561 GCTTAAGCGGTTTATGTAATAGATACACAATATTTAAAATTTAATCCAATGCTGAGAAATTC
131 GCTTAAGCGGTTTATGTAATAGATACACAATATTTAAAATTTAATCCAATGCTGAGAAATTC
130623 AATCTAA
1 AATCTAA
130630 CATTTGATGG
Statistics
Matches: 197, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
192 197 1.00
ACGTcount: A:0.38, C:0.08, G:0.16, T:0.38
Consensus pattern (192 bp):
AATCTAATTATTAGTTTGGATTTGGATTTAACGTAAAGTGTATTTAAAACAAGTAGATGGAATTT
TAAACATATGTATAGTTACTTTGTGGGACAAATTGGATTTCATATTTTAAGAAAAATGTAATGAT
GCTTAAGCGGTTTATGTAATAGATACACAATATTTAAAATTTAATCCAATGCTGAGAAATTC
Found at i:143249 original size:60 final size:59
Alignment explanation
Indices: 143156--143342 Score: 288
Period size: 60 Copynumber: 3.2 Consensus size: 59
143146 ATGAATACAG
* *
143156 ATTCATCAGAAAGTTTTGGTGGAGCCTTCATCGGACTCTGTTCTTCTCTTGCTTCTTGAA
1 ATTCATCAG-AAGTTTTAGTGGAGACTTCATCGGACTCTGTTCTTCTCTTGCTTCTTGAA
* * *
143216 ATTCATCAGAAGGTTTTAATGGAGACTTCATCGGACTCTGTTCTTCCCTTGCTTCATGAA
1 ATTCATCAGAA-GTTTTAGTGGAGACTTCATCGGACTCTGTTCTTCTCTTGCTTCTTGAA
*
143276 ATTCATC--AAGTTTTAGTGGAGACTTCATTGGACTCTGTTCTTCTCTTGCTTCTTGAA
1 ATTCATCAGAAGTTTTAGTGGAGACTTCATCGGACTCTGTTCTTCTCTTGCTTCTTGAA
143333 ATTCATCAGA
1 ATTCATCAGA
143343 GCTGGTACTC
Statistics
Matches: 115, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
57 51 0.44
58 2 0.02
59 3 0.03
60 59 0.51
ACGTcount: A:0.21, C:0.21, G:0.18, T:0.40
Consensus pattern (59 bp):
ATTCATCAGAAGTTTTAGTGGAGACTTCATCGGACTCTGTTCTTCTCTTGCTTCTTGAA
Found at i:143316 original size:57 final size:57
Alignment explanation
Indices: 143166--143340 Score: 269
Period size: 57 Copynumber: 3.0 Consensus size: 57
143156 ATTCATCAGA
* *
143166 AAGTTTTGGTGGAGCCTTCATCGGACTCTGTTCTTCTCTTGCTTCTTGAAATTCATC
1 AAGTTTTAGTGGAGACTTCATCGGACTCTGTTCTTCTCTTGCTTCTTGAAATTCATC
* * *
143223 AGAAGGTTTTAATGGAGACTTCATCGGACTCTGTTCTTCCCTTGCTTCATGAAATTCATC
1 --AA-GTTTTAGTGGAGACTTCATCGGACTCTGTTCTTCTCTTGCTTCTTGAAATTCATC
*
143283 AAGTTTTAGTGGAGACTTCATTGGACTCTGTTCTTCTCTTGCTTCTTGAAATTCATC
1 AAGTTTTAGTGGAGACTTCATCGGACTCTGTTCTTCTCTTGCTTCTTGAAATTCATC
143340 A
1 A
143341 GAGCTGGTAC
Statistics
Matches: 106, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
57 52 0.49
58 2 0.02
59 2 0.02
60 50 0.47
ACGTcount: A:0.20, C:0.21, G:0.18, T:0.41
Consensus pattern (57 bp):
AAGTTTTAGTGGAGACTTCATCGGACTCTGTTCTTCTCTTGCTTCTTGAAATTCATC
Found at i:158051 original size:23 final size:22
Alignment explanation
Indices: 158008--158051 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
157998 TTCTAAGTCG
158008 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
158031 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
158052 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:158160 original size:45 final size:45
Alignment explanation
Indices: 158096--158189 Score: 152
Period size: 45 Copynumber: 2.1 Consensus size: 45
158086 AATAGATACT
** *
158096 CGGTGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTC
1 CGGTGGAAACAGCACATAGCAACCACCTTACTAATCAATGATGTC
*
158141 CGGTGGAAACAGCACATAGCAACCACCTTACTAATCAATGATGTT
1 CGGTGGAAACAGCACATAGCAACCACCTTACTAATCAATGATGTC
158186 CGGT
1 CGGT
158190 TCACATAGTA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.24
Consensus pattern (45 bp):
CGGTGGAAACAGCACATAGCAACCACCTTACTAATCAATGATGTC
Found at i:158253 original size:51 final size:50
Alignment explanation
Indices: 158186--158381 Score: 223
Period size: 51 Copynumber: 3.9 Consensus size: 50
158176 CAATGATGTT
* *
158186 CGGTTCACATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCA-TACCATC
* * * * * *
158237 CGATACACGTAGTAGCCTACACATAGTACTACACAAGTGATCGAAACTATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGA-CCATACCATC
* * * * * *
158288 TGGTACGCATAATAGCCTGCACATAGTACTACACATGCGACC-TATCATTC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATACCA-TC
*
158338 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAT
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCAT
158382 CACTTTCACT
Statistics
Matches: 116, Mismatches: 26, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
49 2 0.02
50 39 0.34
51 73 0.63
52 2 0.02
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (50 bp):
CGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATACCATC
Found at i:161703 original size:17 final size:18
Alignment explanation
Indices: 161677--161714 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
161667 CAAAAATTAA
161677 TTATAAATTTTGA-ATTT
1 TTATAAATTTTGAGATTT
* *
161694 TTATATATTTTTAGATTT
1 TTATAAATTTTGAGATTT
161712 TTA
1 TTA
161715 AAAAATATAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (18 bp):
TTATAAATTTTGAGATTT
Found at i:161924 original size:26 final size:26
Alignment explanation
Indices: 161888--161940 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
161878 ATATTCTTAG
161888 ATTTTTTAAAATATTTA-AATATTTTT
1 ATTTTTTAAAATATTTACAA-ATTTTT
*
161914 ATTTTTTAAAATTTTTACAAATTTTT
1 ATTTTTTAAAATATTTACAAATTTTT
161940 A
1 A
161941 ATAATTTATA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (26 bp):
ATTTTTTAAAATATTTACAAATTTTT
Found at i:161940 original size:10 final size:9
Alignment explanation
Indices: 161851--161971 Score: 84
Period size: 10 Copynumber: 13.0 Consensus size: 9
161841 TATTTAATTT
161851 AATTTTTAA
1 AATTTTTAA
*
161860 AATGTTTAA
1 AATTTTTAA
161869 ACATTTTTAA
1 A-ATTTTTAA
* * *
161879 TATTCTTAG
1 AATTTTTAA
*
161888 ATTTTTTAA
1 AATTTTTAA
*
161897 AATATTTAA
1 AATTTTTAA
161906 ATATTTTT--
1 A-ATTTTTAA
*
161914 ATTTTTTAA
1 AATTTTTAA
161923 AATTTTTACA
1 AATTTTTA-A
161933 AATTTTTAA
1 AATTTTTAA
*
161942 TAATTTATAA
1 -AATTTTTAA
* *
161952 GTATGTTTAA
1 -AATTTTTAA
161962 AAGTTTTTAA
1 AA-TTTTTAA
161972 GCCACATGAA
Statistics
Matches: 84, Mismatches: 21, Indels: 13
0.71 0.18 0.11
Matches are distributed among these distances:
7 5 0.06
8 1 0.01
9 37 0.44
10 41 0.49
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.55
Consensus pattern (9 bp):
AATTTTTAA
Found at i:163392 original size:18 final size:19
Alignment explanation
Indices: 163359--163399 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
163349 ATGTCTCTAA
163359 AATAATAACAAGATTA-AC
1 AATAATAACAAGATTATAC
163377 AATAA-AACAAGTATTATAC
1 AATAATAACAAG-ATTATAC
163396 AATA
1 AATA
163400 TCCAAACAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 6 0.29
18 9 0.43
19 6 0.29
ACGTcount: A:0.61, C:0.10, G:0.05, T:0.24
Consensus pattern (19 bp):
AATAATAACAAGATTATAC
Found at i:169210 original size:18 final size:20
Alignment explanation
Indices: 169189--169228 Score: 57
Period size: 18 Copynumber: 2.1 Consensus size: 20
169179 CTAAATAAAA
*
169189 ATAAAAAT-TTATAAAT-TT
1 ATAAAAATATTAGAAATATT
169207 ATAAAAATATTAGAAATATT
1 ATAAAAATATTAGAAATATT
169227 AT
1 AT
169229 TTGACACTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 8 0.42
19 7 0.37
20 4 0.21
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (20 bp):
ATAAAAATATTAGAAATATT
Found at i:169442 original size:24 final size:24
Alignment explanation
Indices: 169380--169447 Score: 82
Period size: 24 Copynumber: 2.8 Consensus size: 24
169370 TAAGAAAAGG
* *
169380 GTTACAAGAAGATTAAAGGTGAAGA
1 GTTA-AAGAAGATGAAAGGTGAAAA
169405 GTTAAAGAAGATGAAAGGTGAAAA
1 GTTAAAGAAGATGAAAGGTGAAAA
* * *
169429 GTTGAGGAATATGAAAGGT
1 GTTAAAGAAGATGAAAGGT
169448 TGAACATCTA
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
24 34 0.89
25 4 0.11
ACGTcount: A:0.47, C:0.01, G:0.31, T:0.21
Consensus pattern (24 bp):
GTTAAAGAAGATGAAAGGTGAAAA
Found at i:170271 original size:96 final size:94
Alignment explanation
Indices: 170159--170438 Score: 303
Period size: 94 Copynumber: 2.9 Consensus size: 94
170149 GTTTGTCACT
** * * **
170159 TAAATTAATTATAAAATTTTCAAAATTAGATTA-ATTTTCGTGTTTATTGTTTTGTAAGAAAAAA
1 TAAATTAATTATAAAATTTT-AAAATTAGATTAGGGTTTAGAGTTTAAGGTTTT-TAAG-AAAAA
* *
170223 ATCAATTAAATTAGGGTTTAGGGTTACTTGAG
63 ATCAAATAAATTAGGGTTCAGGGTTACTTGAG
* * * * * *
170255 TAATTTAATTAAAAAATTTTAAAGATCAAATTAGGGTTTAGAG-TTAAGGGTTTTAAGGAAAAAT
1 TAAATTAATTATAAAATTTTAAA-ATTAGATTAGGGTTTAGAGTTTAAGGTTTTTAAGAAAAAAT
170319 CAAATAAATTAGGGTTCAGGGTTACTTGAG
65 CAAATAAATTAGGGTTCAGGGTTACTTGAG
* * * *
170349 TAAATTAATTATAAATTTTTAATAAATTAGTTTAGGGTTTAGGGTTTAGGGTTTTTAAGTAAAAA
1 TAAATTAATTATAAAATTTT-A-AAATTAGATTAGGGTTTAGAGTTTAAGGTTTTTAAG-AAAAA
* *
170414 CTCAAATAAATTAGGGTTCTGGGTT
63 ATCAAATAAATTAGGGTTCAGGGTT
170439 TAAGGTTACT
Statistics
Matches: 152, Mismatches: 26, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
94 51 0.34
95 23 0.15
96 46 0.30
97 32 0.21
ACGTcount: A:0.39, C:0.04, G:0.18, T:0.40
Consensus pattern (94 bp):
TAAATTAATTATAAAATTTTAAAATTAGATTAGGGTTTAGAGTTTAAGGTTTTTAAGAAAAAATC
AAATAAATTAGGGTTCAGGGTTACTTGAG
Found at i:170390 original size:7 final size:7
Alignment explanation
Indices: 170378--170402 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
170368 TAATAAATTA
170378 GTTTAGG
1 GTTTAGG
170385 GTTTAGG
1 GTTTAGG
170392 GTTTAGG
1 GTTTAGG
170399 GTTT
1 GTTT
170403 TTAAGTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.40, T:0.48
Consensus pattern (7 bp):
GTTTAGG
Found at i:170701 original size:126 final size:126
Alignment explanation
Indices: 170471--171138 Score: 1176
Period size: 126 Copynumber: 5.3 Consensus size: 126
170461 TTGTTAATTT
* * *
170471 AAAGAAGCTCCCACGTGGATGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCGAGTAGAC
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAGAATAATTTCGAGTAGAC
* * **
170536 ATTTCTGAGCAAACAGTGTCAAAAACGCTTTAAGAAGGATGCTTTGTCAGCAGAAGTACTG
66 GTTTTTGAGCAAACAGTGTCAAAAACGCTTTAATTAGGATGCTTTGTCAGCAGAAGTACTG
170597 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAGAATAATTTCGAGTAGAC
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAGAATAATTTCGAGTAGAC
170662 GTTTTTGAGCAAACAGTGTCAAAAACGCTTTAATTAGGATGCTTTGTCAGCAGAAGTACTG
66 GTTTTTGAGCAAACAGTGTCAAAAACGCTTTAATTAGGATGCTTTGTCAGCAGAAGTACTG
170723 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAGAATAATTTCGAGTAGAC
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAGAATAATTTCGAGTAGAC
170788 GTTTTTGAGCAAACAGTGTCAAAAACGCTTTAATTAGGATGCTTTGTCAGCAGAAGTACTG
66 GTTTTTGAGCAAACAGTGTCAAAAACGCTTTAATTAGGATGCTTTGTCAGCAGAAGTACTG
170849 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAGAATAATTTCGAGTAGAC
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAGAATAATTTCGAGTAGAC
170914 GTTTTTGAGCAAACAGTGTCAAAAACGCTTTAATTAGGATGCTTTGTCAGCAGAAGTACTG
66 GTTTTTGAGCAAACAGTGTCAAAAACGCTTTAATTAGGATGCTTTGTCAGCAGAAGTACTG
* * * * *
170975 AAAGAAGCTCTCACGTGGACGGGCTTTTGCTATAGTAGCCCCTGAAAAAATAATTTCGAGTAGAC
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAGAATAATTTCGAGTAGAC
* ** * *
171040 -TTTTTGAGCAAACAGTGTCAAAAATGCTTTAAGCAGGATGCTTTGTCAGCAGATGTATTG
66 GTTTTTGAGCAAACAGTGTCAAAAACGCTTTAATTAGGATGCTTTGTCAGCAGAAGTACTG
171100 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGC
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGC
171139 GCATGGCCTG
Statistics
Matches: 522, Mismatches: 20, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
125 91 0.17
126 431 0.83
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (126 bp):
AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAGAATAATTTCGAGTAGAC
GTTTTTGAGCAAACAGTGTCAAAAACGCTTTAATTAGGATGCTTTGTCAGCAGAAGTACTG
Found at i:175005 original size:11 final size:11
Alignment explanation
Indices: 174991--175050 Score: 75
Period size: 11 Copynumber: 5.4 Consensus size: 11
174981 TCTTTTAAAT
174991 AGAAATTTGAG
1 AGAAATTTGAG
175002 AGAAATTTGAG
1 AGAAATTTGAG
* *
175013 AGGAAGTTGAG
1 AGAAATTTGAG
*
175024 AGGAATTTGAG
1 AGAAATTTGAG
*
175035 AGAATATTAGAG
1 AGAA-ATTTGAG
175047 AGAA
1 AGAA
175051 TATTAGAGAA
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
11 33 0.77
12 10 0.23
ACGTcount: A:0.45, C:0.00, G:0.32, T:0.23
Consensus pattern (11 bp):
AGAAATTTGAG
Found at i:175049 original size:12 final size:12
Alignment explanation
Indices: 175032--175059 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
175022 AGAGGAATTT
175032 GAGAGAATATTA
1 GAGAGAATATTA
175044 GAGAGAATATTA
1 GAGAGAATATTA
175056 GAGA
1 GAGA
175060 AAGGATTTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.29, T:0.21
Consensus pattern (12 bp):
GAGAGAATATTA
Found at i:175051 original size:22 final size:20
Alignment explanation
Indices: 174991--175061 Score: 63
Period size: 22 Copynumber: 3.2 Consensus size: 20
174981 TCTTTTAAAT
174991 AGAAATTTGAGAGAAATTTGAG
1 AGAAA-TTGAGAG-AATTTGAG
*
175013 AGGAAGTTGAGAGGAATTTGAG
1 A-GAAATTGAGA-GAATTTGAG
175035 AGAATATTAGAGAGAATATT-AG
1 AGAA-ATT-GAGAGAAT-TTGAG
175057 AGAAA
1 AGAAA
175062 GGATTTAGTT
Statistics
Matches: 42, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
21 4 0.10
22 28 0.67
23 10 0.24
ACGTcount: A:0.46, C:0.00, G:0.30, T:0.24
Consensus pattern (20 bp):
AGAAATTGAGAGAATTTGAG
Found at i:190243 original size:54 final size:54
Alignment explanation
Indices: 190159--190267 Score: 200
Period size: 54 Copynumber: 2.0 Consensus size: 54
190149 AATACTCAGG
*
190159 CGGCAGGGTTGACCATATATTAAAGCCAACCCAAGTGCACTAAGTGCTTAGAAA
1 CGGCAGAGTTGACCATATATTAAAGCCAACCCAAGTGCACTAAGTGCTTAGAAA
*
190213 CGGCAGAGTTGACCATATATTAAAGTCAACCCAAGTGCACTAAGTGCTTAGAAA
1 CGGCAGAGTTGACCATATATTAAAGCCAACCCAAGTGCACTAAGTGCTTAGAAA
190267 C
1 C
190268 TTAAGGCTTA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.21
Consensus pattern (54 bp):
CGGCAGAGTTGACCATATATTAAAGCCAACCCAAGTGCACTAAGTGCTTAGAAA
Found at i:196911 original size:151 final size:152
Alignment explanation
Indices: 196623--196932 Score: 451
Period size: 151 Copynumber: 2.0 Consensus size: 152
196613 TCTCGAGCTA
* * * * *
196623 TTCACTTTCACGGGTCTGCTCACACAAGCTGTCAGTCATTCGTTTCTATTCAGTGCTACTCATAC
1 TTCACATTCACGGGTCTGCTCACACAAGCTGTCAGTCATTCATTACTACTCAGTGCTACTCACAC
* *
196688 AAGCTGTCAGGTATCTGCAACACATACCAGTATACCCAGGCATTGGTAGAACTTAAGACCAGCAC
66 AAGCTGTCAGGTATCCGCAACACATACCAGTATACCCAGCCATTGGTAGAACTTAAGACCAGCAC
196753 CCAGATTCACTTTAGTCACACT
131 CCAGATTCACTTTAGTCACACT
* * *
196775 TTCACATT-ACGGGTCTGCTCACACAAGCTGTCAGTCTTTCATTACTACTCAGTGTTGCTCACAC
1 TTCACATTCACGGGTCTGCTCACACAAGCTGTCAGTCATTCATTACTACTCAGTGCTACTCACAC
* ** * * * *
196839 AAGCTGTCAGGTATCCGCAATACATGTCGGTATGCTCAGCCATTGGTAGAACTTAAGACTAGCAC
66 AAGCTGTCAGGTATCCGCAACACATACCAGTATACCCAGCCATTGGTAGAACTTAAGACCAGCAC
*
196904 CCGGATTCACTTTAGTCACACT
131 CCAGATTCACTTTAGTCACACT
196926 TTCACAT
1 TTCACAT
196933 AGAACCTTAG
Statistics
Matches: 140, Mismatches: 18, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
151 133 0.95
152 7 0.05
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (152 bp):
TTCACATTCACGGGTCTGCTCACACAAGCTGTCAGTCATTCATTACTACTCAGTGCTACTCACAC
AAGCTGTCAGGTATCCGCAACACATACCAGTATACCCAGCCATTGGTAGAACTTAAGACCAGCAC
CCAGATTCACTTTAGTCACACT
Found at i:202068 original size:13 final size:14
Alignment explanation
Indices: 202031--202062 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
202021 ATGGCCTACA
202031 ATTTCACGAAATCG
1 ATTTCACGAAATCG
202045 ATTTCACGAAAT-G
1 ATTTCACGAAATCG
202058 ATTTC
1 ATTTC
202063 GTGAAAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 6 0.33
14 12 0.67
ACGTcount: A:0.34, C:0.19, G:0.12, T:0.34
Consensus pattern (14 bp):
ATTTCACGAAATCG
Found at i:213508 original size:18 final size:19
Alignment explanation
Indices: 213475--213510 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
213465 TCAAATGAAC
*
213475 TAAAATCATAAATATGTAA
1 TAAAATAATAAATATGTAA
213494 TAAAATAAT-AATATGTA
1 TAAAATAATAAATATGTA
213511 TAGATACATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.58, C:0.03, G:0.06, T:0.33
Consensus pattern (19 bp):
TAAAATAATAAATATGTAA
Found at i:215930 original size:112 final size:113
Alignment explanation
Indices: 215732--215946 Score: 360
Period size: 112 Copynumber: 1.9 Consensus size: 113
215722 TTTCATGGAT
* **
215732 GTCAAAATAAAAAAAAAAGGCCCACATCTAACTTGACTTAAATCTATCCAAAGATTTATTGTGTA
1 GTCAAAATAAAAAAAAAAGGCCCACATCTAACTTGACTTAAAGCTATCCAAAGATTTATTGTACA
* *
215797 GATTACTATTCAAAGATCTATCTAAATATTTTTTTGAAGATGGAGTGA
66 AATTACTATTCAAAGATCTATCTAAATATTTGTTTGAAGATGGAGTGA
*
215845 GTCAAAAT-AAAAAAAAAGGCCCACATCTAAGTTGACTTAAAGCTATCCAAAGATTTATTGTACA
1 GTCAAAATAAAAAAAAAAGGCCCACATCTAACTTGACTTAAAGCTATCCAAAGATTTATTGTACA
*
215909 AATTACTATTCAAATATCTATCTAAATATTTGTTTGAA
66 AATTACTATTCAAAGATCTATCTAAATATTTGTTTGAA
215947 CATCAGAGTG
Statistics
Matches: 95, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
112 87 0.92
113 8 0.08
ACGTcount: A:0.42, C:0.14, G:0.12, T:0.33
Consensus pattern (113 bp):
GTCAAAATAAAAAAAAAAGGCCCACATCTAACTTGACTTAAAGCTATCCAAAGATTTATTGTACA
AATTACTATTCAAAGATCTATCTAAATATTTGTTTGAAGATGGAGTGA
Found at i:217761 original size:15 final size:15
Alignment explanation
Indices: 217741--217789 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
217731 TACTTTTCAA
217741 TTTTTAAGAATTTAG
1 TTTTTAAGAATTTAG
* *
217756 TTTTT-ATATTTGTA-
1 TTTTTAAGAATT-TAG
217770 TTTTTAAGAATTTAG
1 TTTTTAAGAATTTAG
217785 TTTTT
1 TTTTT
217790 TTTTTAGATT
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
14 11 0.41
15 16 0.59
ACGTcount: A:0.27, C:0.00, G:0.10, T:0.63
Consensus pattern (15 bp):
TTTTTAAGAATTTAG
Found at i:218160 original size:16 final size:16
Alignment explanation
Indices: 218139--218170 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
218129 TTTCAGATTT
218139 ATTAACCACACACACG
1 ATTAACCACACACACG
*
218155 ATTAACCACAGACACG
1 ATTAACCACACACACG
218171 TGGCTCACTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.44, C:0.34, G:0.09, T:0.12
Consensus pattern (16 bp):
ATTAACCACACACACG
Found at i:220391 original size:19 final size:19
Alignment explanation
Indices: 220367--220440 Score: 94
Period size: 19 Copynumber: 3.8 Consensus size: 19
220357 ATTTTTGAGA
220367 ATATGCAATCTTAGATATG
1 ATATGCAATCTTAGATATG
**
220386 ATATGCAATCCAAGATATG
1 ATATGCAATCTTAGATATG
**
220405 ATATATATAATCTTAGATATG
1 --ATATGCAATCTTAGATATG
220426 ATATGCAATCTTAGA
1 ATATGCAATCTTAGA
220441 ATATATGATT
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
19 30 0.67
21 15 0.33
ACGTcount: A:0.41, C:0.11, G:0.14, T:0.35
Consensus pattern (19 bp):
ATATGCAATCTTAGATATG
Found at i:221898 original size:98 final size:98
Alignment explanation
Indices: 221775--222167 Score: 741
Period size: 98 Copynumber: 4.0 Consensus size: 98
221765 TTAAAAATAA
* * * * *
221775 TAAAGGAAATATTTCGAGTTTGGGATTTTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCAAGTTTGGGATTCTAAAGGAATCGTGCCCTAATGTATTGGGTGTGATTTC
221840 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
221873 TAAAGGAAATATTCCAAGTTTGGGATTCTAAAGGAATCGTGCCCTAATGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCAAGTTTGGGATTCTAAAGGAATCGTGCCCTAATGTATTGGGTGTGATTTC
221938 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
221971 TAAAGGAAATATTCCAAGTTTGGGATTCTAAAGGAATCGTGCCCTAATGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCAAGTTTGGGATTCTAAAGGAATCGTGCCCTAATGTATTGGGTGTGATTTC
222036 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
222069 TAAAGGAAATATTCCAAGTTTGGGATTCTAAAGGAATCGTGCCCTAATGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCAAGTTTGGGATTCTAAAGGAATCGTGCCCTAATGTATTGGGTGTGATTTC
222134 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
222167 T
1 T
222168 TTTATTGTAC
Statistics
Matches: 290, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
98 290 1.00
ACGTcount: A:0.29, C:0.10, G:0.24, T:0.37
Consensus pattern (98 bp):
TAAAGGAAATATTCCAAGTTTGGGATTCTAAAGGAATCGTGCCCTAATGTATTGGGTGTGATTTC
TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
Found at i:231342 original size:22 final size:22
Alignment explanation
Indices: 231301--231342 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
231291 CTTGAATTTT
*
231301 TAAATTCAGAAAGTAGAAAAAC
1 TAAATTCAGAAAATAGAAAAAC
231323 TAAATTCCAGAAAATA-AAAA
1 TAAATT-CAGAAAATAGAAAA
231343 TAGGTTATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.62, C:0.10, G:0.10, T:0.19
Consensus pattern (22 bp):
TAAATTCAGAAAATAGAAAAAC
Found at i:233278 original size:12 final size:13
Alignment explanation
Indices: 233255--233296 Score: 52
Period size: 12 Copynumber: 3.4 Consensus size: 13
233245 AAAAAAAGAG
*
233255 ATTTGACATTATA
1 ATTTTACATTATA
233268 ATTTT-CATTATA
1 ATTTTACATTATA
*
233280 TTTTTACATT-TA
1 ATTTTACATTATA
233292 ATTTT
1 ATTTT
233297 TTTTTATAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
12 17 0.68
13 8 0.32
ACGTcount: A:0.31, C:0.07, G:0.02, T:0.60
Consensus pattern (13 bp):
ATTTTACATTATA
Found at i:246423 original size:29 final size:31
Alignment explanation
Indices: 246390--246464 Score: 75
Period size: 29 Copynumber: 2.5 Consensus size: 31
246380 AAATATAATT
*
246390 TAAAATAATTATTATTAAATATAA-T-TTAA
1 TAAAATAATTATTATTAAATAAAATTCTTAA
* *
246419 TAAAA-AATATATAATTTAATAAAATTCTTAA
1 TAAAATAAT-TATTATTAAATAAAATTCTTAA
* *
246450 TAAAATTATTCTTAT
1 TAAAATAATTATTAT
246465 ATGAATTTAC
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
28 3 0.08
29 17 0.47
30 1 0.03
31 13 0.36
32 2 0.06
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (31 bp):
TAAAATAATTATTATTAAATAAAATTCTTAA
Found at i:246501 original size:60 final size:60
Alignment explanation
Indices: 246316--246502 Score: 201
Period size: 60 Copynumber: 3.1 Consensus size: 60
246306 ATATAATTTA
246316 ATAAAATTCTTAATATTAAA-TATTCTTATATGAATTTACTAAAATCATAATATATAATACT
1 ATAAAATTCTTAATA--AAATTATTCTTATATGAATTTACTAAAATCATAATATATAATACT
* * * *
246377 ATAAAATATAATTTAA-AATAATTATTATTAAATAT-AATTTAAT-AAA--A-AATATATAAT-T
1 ATAAAAT-T--CTTAATAA-AATTATTCTT--ATATGAATTTACTAAAATCATAATATATAATAC
246435 T
60 T
246436 AATAAAATTCTTAATAAAATTATTCTTATATGAATTTACTAAAATCATAATATATAATACT
1 -ATAAAATTCTTAATAAAATTATTCTTATATGAATTTACTAAAATCATAATATATAATACT
246497 ATAAAA
1 ATAAAA
246503 ATAATATATA
Statistics
Matches: 103, Mismatches: 8, Indels: 31
0.73 0.06 0.22
Matches are distributed among these distances:
55 4 0.04
56 7 0.07
57 16 0.16
58 2 0.02
59 3 0.03
60 33 0.32
61 10 0.10
62 3 0.03
63 10 0.10
64 11 0.11
65 4 0.04
ACGTcount: A:0.52, C:0.05, G:0.01, T:0.41
Consensus pattern (60 bp):
ATAAAATTCTTAATAAAATTATTCTTATATGAATTTACTAAAATCATAATATATAATACT
Found at i:248777 original size:43 final size:43
Alignment explanation
Indices: 248716--248801 Score: 154
Period size: 43 Copynumber: 2.0 Consensus size: 43
248706 GGGAGGAATG
248716 CCGGAGTCAGAGGAAGCAAGAAATGGCTGCCGTTGAGTGTTTT
1 CCGGAGTCAGAGGAAGCAAGAAATGGCTGCCGTTGAGTGTTTT
* *
248759 CCGGAGTCGGAGGAAGCAAGAAATGGCTGTCGTTGAGTGTTTT
1 CCGGAGTCAGAGGAAGCAAGAAATGGCTGCCGTTGAGTGTTTT
248802 TGAGGTAAGA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.24, C:0.15, G:0.36, T:0.24
Consensus pattern (43 bp):
CCGGAGTCAGAGGAAGCAAGAAATGGCTGCCGTTGAGTGTTTT
Found at i:249827 original size:19 final size:19
Alignment explanation
Indices: 249787--249833 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
249777 CACTTAATGC
** *
249787 TTATATTAA-TATTAATAT
1 TTATATTAATTAAAAATAA
249805 TTATATTAATTAAAAATAA
1 TTATATTAATTAAAAATAA
249824 TTATATTAAT
1 TTATATTAAT
249834 ATTAAAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
18 9 0.36
19 16 0.64
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
TTATATTAATTAAAAATAA
Found at i:251253 original size:43 final size:43
Alignment explanation
Indices: 250940--251236 Score: 432
Period size: 43 Copynumber: 6.9 Consensus size: 43
250930 TCGCTAAAAG
* * * *
250940 TCATGACCTTTAGCGGCGCTTTTCCCTCAAACGTCGCTATAAA
1 TCATGACTTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGA
** *
250983 TCATGACTTTTAGCGATGCTTTTCCCACAAACGCCACTATAGA
1 TCATGACTTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGA
*
251026 TCATGACTTTTAGTGGCGCTTTTCCCACAAACGCCGCTATAGA
1 TCATGACTTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGA
*
251069 TCATGACTTTTAGCGGCGCTTTTCCCAAAAACGCCGCTATAGA
1 TCATGACTTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGA
* * *
251112 TCATGACTTTTAGTGGCGCTTTTCCCAAAAATGCCGCTATAGA
1 TCATGACTTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGA
* * *
251155 TCATGACTTTTAACGGCGCTTCTCCCACAAACGCCGTTATAGA
1 TCATGACTTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGA
** *
251198 TCATGACTTTTAGCGGTACTTTTCCCACAAATGCCGCTA
1 TCATGACTTTTAGCGGCGCTTTTCCCACAAACGCCGCTA
251237 AAGAATACGA
Statistics
Matches: 227, Mismatches: 27, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 227 1.00
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (43 bp):
TCATGACTTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGA
Found at i:251585 original size:21 final size:21
Alignment explanation
Indices: 251561--251623 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
251551 TTCTCCTCTG
* *
251561 CTCTGTTGCTCTCGCTGTTGC
1 CTCTGCTGCTCTCGCTGCTGC
251582 CTCTGCTGCTCTCGCTGCTGC
1 CTCTGCTGCTCTCGCTGCTGC
* *
251603 CTCTGCTTCCCTCGCTGCTGC
1 CTCTGCTGCTCTCGCTGCTGC
251624 ATCTACTTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.00, C:0.41, G:0.22, T:0.37
Consensus pattern (21 bp):
CTCTGCTGCTCTCGCTGCTGC
Found at i:253958 original size:9 final size:9
Alignment explanation
Indices: 253940--254069 Score: 116
Period size: 9 Copynumber: 15.3 Consensus size: 9
253930 GTCTGATGTA
*
253940 TTATGAAAG
1 TTATGTAAG
253949 TTATGTAAG
1 TTATGTAAG
253958 TTATGT-A-
1 TTATGTAAG
*
253965 TTATGAAAG
1 TTATGTAAG
253974 TTATGTAAG
1 TTATGTAAG
253983 TTATGT-A-
1 TTATGTAAG
253990 TTATGTAAG
1 TTATGTAAG
*
253999 TTACGTAAG
1 TTATGTAAG
254008 TTATGTAAG
1 TTATGTAAG
254017 TTATGT-A-
1 TTATGTAAG
*
254024 TTAT-TGAAA
1 TTATGT-AAG
* * *
254033 TAATTTAAA
1 TTATGTAAG
254042 TTATGTAAG
1 TTATGTAAG
254051 TTATGT-A-
1 TTATGTAAG
*
254058 TTATGAAAG
1 TTATGTAAG
254067 TTA
1 TTA
254070 CGTATTATTT
Statistics
Matches: 101, Mismatches: 10, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
6 1 0.01
7 20 0.20
8 8 0.08
9 71 0.70
10 1 0.01
ACGTcount: A:0.37, C:0.01, G:0.18, T:0.45
Consensus pattern (9 bp):
TTATGTAAG
Found at i:253964 original size:25 final size:25
Alignment explanation
Indices: 253935--254014 Score: 142
Period size: 25 Copynumber: 3.2 Consensus size: 25
253925 CATAAGTCTG
253935 ATGTATTATGAAAGTTATGTAAGTT
1 ATGTATTATGAAAGTTATGTAAGTT
253960 ATGTATTATGAAAGTTATGTAAGTT
1 ATGTATTATGAAAGTTATGTAAGTT
* *
253985 ATGTATTATGTAAGTTACGTAAGTT
1 ATGTATTATGAAAGTTATGTAAGTT
254010 ATGTA
1 ATGTA
254015 AGTTATGTAT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 53 1.00
ACGTcount: A:0.35, C:0.01, G:0.20, T:0.44
Consensus pattern (25 bp):
ATGTATTATGAAAGTTATGTAAGTT
Found at i:253978 original size:34 final size:34
Alignment explanation
Indices: 253965--254069 Score: 133
Period size: 34 Copynumber: 3.1 Consensus size: 34
253955 AAGTTATGTA
*
253965 TTATGAAAGTTATGTAAGTTATGTATTATGTAAG
1 TTATGAAAGTTATGTAAGTTATGTATTATGAAAG
* *
253999 TTACGTAAGTTATGTAAGTTATGTATTATTGAAA-
1 TTATGAAAGTTATGTAAGTTATGTATTA-TGAAAG
* *
254033 TAATTTAAA-TTATGTAAGTTATGTATTATGAAAG
1 TTA-TGAAAGTTATGTAAGTTATGTATTATGAAAG
254067 TTA
1 TTA
254070 CGTATTATTT
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
33 5 0.08
34 49 0.82
35 6 0.10
ACGTcount: A:0.37, C:0.01, G:0.17, T:0.45
Consensus pattern (34 bp):
TTATGAAAGTTATGTAAGTTATGTATTATGAAAG
Found at i:254013 original size:59 final size:59
Alignment explanation
Indices: 253949--254212 Score: 218
Period size: 59 Copynumber: 4.4 Consensus size: 59
253939 ATTATGAAAG
* * * *
253949 TTATGTAAGTTATGTATTATGAAAGTTATGTAAGTTATGTATTATGTAAGTTACGTAAG
1 TTATGTAAGTTATGTATTATGAAAATTATGTAAGTTATGTATTATGTAAATAACGTAAA
*
254008 TTATGTAAGTTATGTATTATTGAAATAATTTAAATTATGTAAGTTATGTATTATG-AAAGTTACG
1 TTATGTAAGTTATGTATTA-TG-----A---AAATTATGTAAGTTATGTATTATGTAAA-TAACG
254072 T--A
56 TAAA
* * * * * * * **
254074 TTATTTAA-ATA-ATATCATCACAA--ATGTAAGTTATGTATTATTTAAATAAATTAAA
1 TTATGTAAGTTATGTATTATGAAAATTATGTAAGTTATGTATTATGTAAATAACGTAAA
* * **
254129 TTATGTAAGTTATGTATTATGAAAATAATGTAAGTTATGTATTATTTAAATAATTTAAA
1 TTATGTAAGTTATGTATTATGAAAATTATGTAAGTTATGTATTATGTAAATAACGTAAA
254188 TTATGTAAGTTATGTATTATTGAAA
1 TTATGTAAGTTATGTATTA-TGAAA
254213 TAATTTAAAT
Statistics
Matches: 167, Mismatches: 20, Indels: 35
0.75 0.09 0.16
Matches are distributed among these distances:
53 21 0.13
54 3 0.02
55 10 0.06
56 2 0.01
57 8 0.05
58 1 0.01
59 69 0.41
60 7 0.04
63 1 0.01
64 4 0.02
65 3 0.02
66 7 0.04
67 2 0.01
68 29 0.17
ACGTcount: A:0.40, C:0.02, G:0.14, T:0.45
Consensus pattern (59 bp):
TTATGTAAGTTATGTATTATGAAAATTATGTAAGTTATGTATTATGTAAATAACGTAAA
Found at i:254140 original size:34 final size:34
Alignment explanation
Indices: 254057--254241 Score: 194
Period size: 34 Copynumber: 5.6 Consensus size: 34
254047 TAAGTTATGT
* *
254057 ATTATGAAAGTTACGTATTATTTAAATAATATCATCACA
1 ATTATGTAAGTTATGTATTATTTAAATAA-AT--T-A-A
254096 A--ATGTAAGTTATGTATTATTTAAATAAATTAA
1 ATTATGTAAGTTATGTATTATTTAAATAAATTAA
*
254128 ATTATGTAAGTTATGTATTA--T-GA-AAA-T--
1 ATTATGTAAGTTATGTATTATTTAAATAAATTAA
*
254155 A--ATGTAAGTTATGTATTATTTAAATAATTTAA
1 ATTATGTAAGTTATGTATTATTTAAATAAATTAA
* *
254187 ATTATGTAAGTTATGTATTATTGAAATAATTTAA
1 ATTATGTAAGTTATGTATTATTTAAATAAATTAA
254221 ATTATGTAAGTTATGTATTAT
1 ATTATGTAAGTTATGTATTAT
254242 GAAAGTTATG
Statistics
Matches: 129, Mismatches: 6, Indels: 27
0.80 0.04 0.17
Matches are distributed among these distances:
25 17 0.13
27 2 0.02
28 1 0.01
29 3 0.02
30 4 0.03
31 1 0.01
32 4 0.03
33 1 0.01
34 69 0.53
36 2 0.02
37 24 0.19
39 1 0.01
ACGTcount: A:0.42, C:0.02, G:0.11, T:0.45
Consensus pattern (34 bp):
ATTATGTAAGTTATGTATTATTTAAATAAATTAA
Found at i:254141 original size:9 final size:9
Alignment explanation
Indices: 254125--254253 Score: 71
Period size: 9 Copynumber: 15.2 Consensus size: 9
254115 TTAAATAAAT
254125 TAAATTATG
1 TAAATTATG
*
254134 TAAGTTATG
1 TAAATTATG
254143 T--ATTATG
1 TAAATTATG
* *
254150 AAAATAATG
1 TAAATTATG
*
254159 TAAGTTATG
1 TAAATTATG
*
254168 T--ATTATT
1 TAAATTATG
* *
254175 TAAATAATT
1 TAAATTATG
254184 TAAATTATG
1 TAAATTATG
*
254193 TAAGTTATG
1 TAAATTATG
254202 T--ATTAT-
1 TAAATTATG
* *
254208 TGAAATAATT
1 T-AAATTATG
254218 TAAATTATG
1 TAAATTATG
*
254227 TAAGTTATG
1 TAAATTATG
254236 T--ATTATG
1 TAAATTATG
254243 -AAAGTTATG
1 TAAA-TTATG
254252 TA
1 TA
254254 TTATTTAAAT
Statistics
Matches: 89, Mismatches: 19, Indels: 23
0.68 0.15 0.18
Matches are distributed among these distances:
6 1 0.01
7 19 0.21
8 1 0.01
9 66 0.74
10 2 0.02
ACGTcount: A:0.41, C:0.00, G:0.13, T:0.46
Consensus pattern (9 bp):
TAAATTATG
Found at i:254154 original size:25 final size:25
Alignment explanation
Indices: 254126--254194 Score: 93
Period size: 25 Copynumber: 2.8 Consensus size: 25
254116 TAAATAAATT
*
254126 AAATTATGTAAGTTATGTATTATGA
1 AAATAATGTAAGTTATGTATTATGA
**
254151 AAATAATGTAAGTTATGTATTATTT
1 AAATAATGTAAGTTATGTATTATGA
* *
254176 AAATAATTTAAATTATGTA
1 AAATAATGTAAGTTATGTA
254195 AGTTATGTAT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.43, C:0.00, G:0.12, T:0.45
Consensus pattern (25 bp):
AAATAATGTAAGTTATGTATTATGA
Found at i:254214 original size:59 final size:59
Alignment explanation
Indices: 254096--254228 Score: 223
Period size: 59 Copynumber: 2.3 Consensus size: 59
254086 TATCATCACA
254096 AATGTAAGTTATGTATTATTTAAATAAATTAAATTATGTAAGTTATGTATTATGAAAAT
1 AATGTAAGTTATGTATTATTTAAATAAATTAAATTATGTAAGTTATGTATTATGAAAAT
*
254155 AATGTAAGTTATGTATTATTTAAATAATTTAAATTATGTAAGTTATGTATTATTG-AAAT
1 AATGTAAGTTATGTATTATTTAAATAAATTAAATTATGTAAGTTATGTATTA-TGAAAAT
* *
254214 AATTTAAATTATGTA
1 AATGTAAGTTATGTA
254229 AGTTATGTAT
Statistics
Matches: 70, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
59 68 0.97
60 2 0.03
ACGTcount: A:0.43, C:0.00, G:0.11, T:0.46
Consensus pattern (59 bp):
AATGTAAGTTATGTATTATTTAAATAAATTAAATTATGTAAGTTATGTATTATGAAAAT
Found at i:254228 original size:180 final size:180
Alignment explanation
Indices: 253949--254290 Score: 603
Period size: 180 Copynumber: 1.9 Consensus size: 180
253939 ATTATGAAAG
* * * * *
253949 TTATGTAAGTTATGTATTATGAAAGTTATGTAAGTTATGTATTATGTAAGTTACGTAAGTTATGT
1 TTATGTAAGTTATGTATTATGAAAATAATGTAAGTTATGTATTATGTAAATAACGTAAATTATGT
254014 AAGTTATGTATTATTGAAATAATTTAAATTATGTAAGTTATGTATTATGAAAGTTACGTATTATT
66 AAGTTATGTATTATTGAAATAATTTAAATTATGTAAGTTATGTATTATGAAAGTTACGTATTATT
254079 TAAATAATATCATCACAAATGTAAGTTATGTATTATTTAAATAAATTAAA
131 TAAATAATATCATCACAAATGTAAGTTATGTATTATTTAAATAAATTAAA
* **
254129 TTATGTAAGTTATGTATTATGAAAATAATGTAAGTTATGTATTATTTAAATAATTTAAATTATGT
1 TTATGTAAGTTATGTATTATGAAAATAATGTAAGTTATGTATTATGTAAATAACGTAAATTATGT
*
254194 AAGTTATGTATTATTGAAATAATTTAAATTATGTAAGTTATGTATTATGAAAGTTATGTATTATT
66 AAGTTATGTATTATTGAAATAATTTAAATTATGTAAGTTATGTATTATGAAAGTTACGTATTATT
254259 TAAATAATATCATCACAAATGTAAGTTATGTA
131 TAAATAATATCATCACAAATGTAAGTTATGTA
254291 ATAGTCCTAT
Statistics
Matches: 153, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
180 153 1.00
ACGTcount: A:0.40, C:0.02, G:0.13, T:0.44
Consensus pattern (180 bp):
TTATGTAAGTTATGTATTATGAAAATAATGTAAGTTATGTATTATGTAAATAACGTAAATTATGT
AAGTTATGTATTATTGAAATAATTTAAATTATGTAAGTTATGTATTATGAAAGTTACGTATTATT
TAAATAATATCATCACAAATGTAAGTTATGTATTATTTAAATAAATTAAA
Found at i:255759 original size:13 final size:14
Alignment explanation
Indices: 255734--255763 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
255724 GTCATTATCG
255734 AACATGATAAGCAA
1 AACATGATAAGCAA
255748 AACATG-TAAGCAA
1 AACATGATAAGCAA
255761 AAC
1 AAC
255764 GTGTGTCTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.62
14 6 0.38
ACGTcount: A:0.57, C:0.17, G:0.13, T:0.13
Consensus pattern (14 bp):
AACATGATAAGCAA
Found at i:257337 original size:7 final size:7
Alignment explanation
Indices: 257325--257593 Score: 96
Period size: 7 Copynumber: 36.9 Consensus size: 7
257315 AGTAATTAAT
257325 CTAAACC
1 CTAAACC
257332 CTAAA-C
1 CTAAACC
257338 CTATAACC
1 CTA-AACC
257346 ACTAAATCC
1 -CTAAA-CC
257355 CTTAAACC
1 C-TAAACC
257363 CTAAACC
1 CTAAACC
* *
257370 CAAAATC
1 CTAAACC
* *
257377 ATAAGCC
1 CTAAACC
257384 CTAAACTC
1 CTAAAC-C
*
257392 GACTTAAATC
1 --C-TAAACC
*
257402 GTAAACC
1 CTAAACC
*
257409 TTAAACC
1 CTAAACC
257416 CT-AACC
1 CTAAACC
257422 TCTAAACC
1 -CTAAACC
*
257430 TTAAACC
1 CTAAACC
257437 CT-AACC
1 CTAAACC
*
257443 CTATACC
1 CTAAACC
*
257450 CTAAACT
1 CTAAACC
*
257457 GTAAACC
1 CTAAACC
* * *
257464 GTAATCA
1 CTAAACC
257471 CTAAACC
1 CTAAACC
*
257478 CATAATCC
1 C-TAAACC
*
257486 ATAAACC
1 CTAAACC
* **
257493 TTAAATA
1 CTAAACC
*
257500 GT-AACTC
1 CTAAAC-C
*
257507 ATAAACC
1 CTAAACC
*
257514 TTAAACC
1 CTAAACC
*
257521 TTAAACC
1 CTAAACC
*
257528 ATAAACC
1 CTAAACC
*
257535 ATAAACC
1 CTAAACC
*
257542 ATAAACC
1 CTAAACC
*
257549 ATGTATAATCC
1 --CTA-AA-CC
257560 CTAAACC
1 CTAAACC
*
257567 CTAAATC
1 CTAAACC
* *
257574 TTATACC
1 CTAAACC
*
257581 CTAAACT
1 CTAAACC
257588 CTAAAC
1 CTAAAC
257594 TGTAATGATA
Statistics
Matches: 197, Mismatches: 46, Indels: 38
0.70 0.16 0.14
Matches are distributed among these distances:
6 16 0.08
7 136 0.69
8 22 0.11
9 13 0.07
10 4 0.02
11 6 0.03
ACGTcount: A:0.43, C:0.31, G:0.03, T:0.23
Consensus pattern (7 bp):
CTAAACC
Found at i:258121 original size:41 final size:41
Alignment explanation
Indices: 258064--258213 Score: 212
Period size: 41 Copynumber: 3.7 Consensus size: 41
258054 TTTAACATAT
*
258064 TCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGA
1 TCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAGA
* *
258105 TCACCGGCACGTAGCCTGCTAGGTTTATAACCTGATTCAGA
1 TCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAGA
* * * *
258146 TCACCGACACTTAGCCTGCTAAG-TTCATAACCCGGTTCAGA
1 TCACCGGCACTTAGCCTGCTAGGCTT-ATAACCTGATTCAGA
*
258187 TCACCGGCACTTAGCCTGCTAGACTTA
1 TCACCGGCACTTAGCCTGCTAGGCTTA
258214 AAGTCTGAAT
Statistics
Matches: 96, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
40 2 0.02
41 92 0.96
42 2 0.02
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (41 bp):
TCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAGA
Found at i:258232 original size:82 final size:83
Alignment explanation
Indices: 258062--258238 Score: 211
Period size: 82 Copynumber: 2.2 Consensus size: 83
258052 AATTTAACAT
* * *
258062 ATTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCACGTAGCCTGCTAG
1 ATTCACCGGCACTTAGCCTGCTAAGCTTATAACCCGATTCAGATCACCGGCACGTAGCCTGCTAG
**
258127 GTTTATAACCTGATTCAG
66 ACTTATAACCTGATTCAG
* * *
258145 A-TCACCGACACTTAGCCTGCTAAG-TTCATAACCCGGTTCAGATCACCGGCACTTAGCCTGCTA
1 ATTCACCGGCACTTAGCCTGCTAAGCTT-ATAACCCGATTCAGATCACCGGCACGTAGCCTGCTA
*
258208 GACTTA-AAGTCTGAATT-A-
65 GACTTATAA-CCTG-ATTCAG
258226 ATTCACCGGCACT
1 ATTCACCGGCACT
258239 ACATCTGCTA
Statistics
Matches: 80, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
81 5 0.06
82 71 0.89
83 4 0.05
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (83 bp):
ATTCACCGGCACTTAGCCTGCTAAGCTTATAACCCGATTCAGATCACCGGCACGTAGCCTGCTAG
ACTTATAACCTGATTCAG
Found at i:259463 original size:41 final size:41
Alignment explanation
Indices: 259405--259520 Score: 160
Period size: 41 Copynumber: 2.8 Consensus size: 41
259395 AATTTAACAT
* *
259405 ATTCAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTG
1 ATTCAGATCACCAGCACTTAGCCTGCTAGGCTTATAACCTG
* * * *
259446 ATTCATATCACTAGCACTTAGCCTACTAGGCTTATAGCCTG
1 ATTCAGATCACCAGCACTTAGCCTGCTAGGCTTATAACCTG
* *
259487 ATTCAGATCACCGGCACTTAGCCTGCTAGACTTA
1 ATTCAGATCACCAGCACTTAGCCTGCTAGGCTTA
259521 AAGTCTGAAT
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 64 1.00
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (41 bp):
ATTCAGATCACCAGCACTTAGCCTGCTAGGCTTATAACCTG
Found at i:259539 original size:41 final size:40
Alignment explanation
Indices: 259412--259545 Score: 137
Period size: 41 Copynumber: 3.3 Consensus size: 40
259402 CATATTCAGA
* *
259412 TCACCGGCACTTAGCCTGCTAGGTTTATAA-CCTGATTCAT
1 TCACCGGCACTTAGCCTGCTAGGCTTA-AAGCCTGATTAAT
** * *
259452 ATCACTAGCACTTAGCCTACTAGGCTTATAGCCTGATTCAGA-
1 -TCACCGGCACTTAGCCTGCTAGGCTTAAAGCCTGATT-A-AT
* *
259494 TCACCGGCACTTAGCCTGCTAGACTTAAAGTCTGAATTAAT
1 TCACCGGCACTTAGCCTGCTAGGCTTAAAGCCTG-ATTAAT
259535 TCACCGGCACT
1 TCACCGGCACT
259546 ACATCTGCTA
Statistics
Matches: 76, Mismatches: 12, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
40 2 0.03
41 70 0.92
42 3 0.04
43 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (40 bp):
TCACCGGCACTTAGCCTGCTAGGCTTAAAGCCTGATTAAT
Found at i:261195 original size:13 final size:13
Alignment explanation
Indices: 261177--261201 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
261167 CAATCAAATG
261177 CACACAAAATAAA
1 CACACAAAATAAA
261190 CACACAAAATAA
1 CACACAAAATAA
261202 TATTAAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.24, G:0.00, T:0.08
Consensus pattern (13 bp):
CACACAAAATAAA
Found at i:261351 original size:52 final size:52
Alignment explanation
Indices: 261283--261387 Score: 210
Period size: 52 Copynumber: 2.0 Consensus size: 52
261273 TGTTACATTA
261283 TAAGCTTCAACTTATAAAACTCAAAGCAAACATTAACTAACATACATATAAT
1 TAAGCTTCAACTTATAAAACTCAAAGCAAACATTAACTAACATACATATAAT
261335 TAAGCTTCAACTTATAAAACTCAAAGCAAACATTAACTAACATACATATAAT
1 TAAGCTTCAACTTATAAAACTCAAAGCAAACATTAACTAACATACATATAAT
261387 T
1 T
261388 CATGTGATTA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.50, C:0.19, G:0.04, T:0.28
Consensus pattern (52 bp):
TAAGCTTCAACTTATAAAACTCAAAGCAAACATTAACTAACATACATATAAT
Found at i:261632 original size:38 final size:38
Alignment explanation
Indices: 261589--261766 Score: 299
Period size: 38 Copynumber: 4.7 Consensus size: 38
261579 TTTTAACTCA
261589 TATACTTACACTTATACGAAATAACTATATATGTATAT
1 TATACTTACACTTATACGAAATAACTATATATGTATAT
261627 TATACTTACACTTATACGAAATAACTATATATGTATAT
1 TATACTTACACTTATACGAAATAACTATATATGTATAT
*
261665 TATACTTACACTTATACGAAATAACT-TAT-TTTA-ACT
1 TATACTTACACTTATACGAAATAACTATATATGTATA-T
261701 CATATACTTACACTTATACGAAATAACTATATATGTATAT
1 --TATACTTACACTTATACGAAATAACTATATATGTATAT
261741 TATACTTACACTTATACGAAATAACT
1 TATACTTACACTTATACGAAATAACT
261767 TACACATATA
Statistics
Matches: 132, Mismatches: 2, Indels: 12
0.90 0.01 0.08
Matches are distributed among these distances:
35 1 0.01
36 4 0.03
37 3 0.02
38 116 0.88
39 3 0.02
40 4 0.03
41 1 0.01
ACGTcount: A:0.42, C:0.15, G:0.04, T:0.39
Consensus pattern (38 bp):
TATACTTACACTTATACGAAATAACTATATATGTATAT
Found at i:261695 original size:114 final size:102
Alignment explanation
Indices: 261572--261845 Score: 390
Period size: 114 Copynumber: 2.6 Consensus size: 102
261562 ATTAACTAAC
261572 ACAT-ATATTTTAACTCATATACTTACACTTATACGAAATAACTATATATGTATATTATACTTAC
1 ACATAATATTTTAACTCATATACTTACACTTATACGAAATAACTATATATGTATATTATACTTAC
* *
261636 ACTTATACGAAATAACTATATATGTATATTATACTTACACTT-AT
66 ACTTATACGAAATAACT-TACA--CATA-TATAC--A-A-TTCAT
261680 ACGAAATAACTTATTTTAACTCATATACTTACACTTATACGAAATAACTATATATGTATATTATA
1 AC---ATAA--TATTTTAACTCATATACTTACACTTATACGAAATAACTATATATGTATATTATA
261745 CTTACACTTATACGAAATAACTTACACATATATACAATTCAT
61 CTTACACTTATACGAAATAACTTACACATATATACAATTCAT
*
261787 ACATTATATTTTAACTCATATACTTACACTTATACGAAATAACTATATATGTATATTAT
1 ACATAATATTTTAACTCATATACTTACACTTATACGAAATAACTATATATGTATATTAT
261846 TACCTATTCG
Statistics
Matches: 156, Mismatches: 3, Indels: 20
0.87 0.02 0.11
Matches are distributed among these distances:
102 53 0.34
104 3 0.02
106 2 0.01
107 5 0.03
108 3 0.02
110 5 0.03
111 5 0.03
112 1 0.01
113 3 0.02
114 76 0.49
ACGTcount: A:0.42, C:0.15, G:0.04, T:0.39
Consensus pattern (102 bp):
ACATAATATTTTAACTCATATACTTACACTTATACGAAATAACTATATATGTATATTATACTTAC
ACTTATACGAAATAACTTACACATATATACAATTCAT
Found at i:263485 original size:40 final size:40
Alignment explanation
Indices: 263440--263542 Score: 145
Period size: 41 Copynumber: 2.5 Consensus size: 40
263430 CTTAATTTTT
*
263440 GCGGCGTTTTTCAAAAAGCGCCACTAATGCTCGACCTATA
1 GCGGCGTTTTTCAAAAAGCGCCACTAATGATCGACCTATA
* *
263480 GCGGCGATTTTT-AAGCAGGCGCCACTAATGATCGACCTATA
1 GCGGCG-TTTTTCAA-AAAGCGCCACTAATGATCGACCTATA
*
263521 GCGGCATTTTTCAAAAAGCGCC
1 GCGGCGTTTTTCAAAAAGCGCC
263543 GCAAATGCCG
Statistics
Matches: 54, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
40 19 0.35
41 35 0.65
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.24
Consensus pattern (40 bp):
GCGGCGTTTTTCAAAAAGCGCCACTAATGATCGACCTATA
Found at i:263654 original size:40 final size:39
Alignment explanation
Indices: 263595--263725 Score: 149
Period size: 40 Copynumber: 3.3 Consensus size: 39
263585 TTAAATTTTT
*
263595 GCGGCGTTTTTAAACAATCACTGCTTATGCTCGACCTATA
1 GCGGCGTTTTT-AACAATCACCGCTTATGCTCGACCTATA
* *
263635 GCGGCGCTTGTTTAA-AATCACCGCTAATGCTCGACTTATA
1 GCGGCG-TT-TTTAACAATCACCGCTTATGCTCGACCTATA
* * *
263675 GCGGTGTTTTTAAACAAGCGCCGC-TAGTGCTCGACCTATA
1 GCGGCGTTTTT-AACAATCACCGCTTA-TGCTCGACCTATA
263715 GCGGCGTTTTT
1 GCGGCGTTTTT
263726 TAAGAAGCGT
Statistics
Matches: 77, Mismatches: 9, Indels: 10
0.80 0.09 0.10
Matches are distributed among these distances:
38 3 0.04
39 5 0.06
40 62 0.81
41 4 0.05
42 3 0.04
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.31
Consensus pattern (39 bp):
GCGGCGTTTTTAACAATCACCGCTTATGCTCGACCTATA
Found at i:263685 original size:154 final size:151
Alignment explanation
Indices: 263308--263698 Score: 421
Period size: 154 Copynumber: 2.5 Consensus size: 151
263298 CGGGTTGTTA
* *
263308 CACTAATGCTCGACCTATAGCGGCGTTTTTCAAAAACCACCGCTAATGATAGACCTATGGCGGTG
1 CACTAATGCTCGACCTATAGCGGCGTTTTT--AAAACCACCGCTAATGATCGACCTATAGCGGTG
** * * *
263373 TTTACCAGAAAGCGCCGCTAATGCCACTAAAGCTCAAAATAAAACAACAGCACTGTGCTTAATTT
64 TTTTTCAAAAAGCGCCGCAAATGCCACTAAAGCTCAAAACAAAACAACAGCACTGTGCTTAATTT
*
263438 TTGCGGCGTTTTTCAAAAAGCGC
129 TTGCGGCGTTTTTCAAAAAGCAC
** * * *
263461 CACTAATGCTCGACCTATAGCGGCGATTTTTAAGCAGGCGCCACTAATGATCGACCTATAGCGGC
1 CACTAATGCTCGACCTATAGCGGCG-TTTTTAA--AACCACCGCTAATGATCGACCTATAGCGGT
* * * **
263526 ATTTTTCAAAAAGCGCCGCAAATGCCGCTAAAGCTCAACACAAAATGAC-G-ACGTTGTGCTTAA
63 GTTTTTCAAAAAGCGCCGCAAATGCCACTAAAGCTCAAAACAAAACAACAGCAC--TGTGCTT-A
*
263589 ATTTTTGCGGCGTTTTT-AAACAATCAC
125 ATTTTTGCGGCGTTTTTCAAA-AAGCAC
** * * * *
263616 TGCTTATGCTCGACCTATAGCGGCGCTTGTTTAAAATCACCGCTAATGCTCGACTTATAGCGGTG
1 CACTAATGCTCGACCTATAGCGGCG-TT-TTTAAAACCACCGCTAATGATCGACCTATAGCGGTG
263681 TTTTT-AAACAAGCGCCGC
64 TTTTTCAAA-AAGCGCCGC
263699 TAGTGCTCGA
Statistics
Matches: 198, Mismatches: 31, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
152 4 0.02
153 29 0.15
154 114 0.58
155 46 0.23
156 5 0.03
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (151 bp):
CACTAATGCTCGACCTATAGCGGCGTTTTTAAAACCACCGCTAATGATCGACCTATAGCGGTGTT
TTTCAAAAAGCGCCGCAAATGCCACTAAAGCTCAAAACAAAACAACAGCACTGTGCTTAATTTTT
GCGGCGTTTTTCAAAAAGCAC
Found at i:263734 original size:40 final size:39
Alignment explanation
Indices: 263622--263766 Score: 139
Period size: 40 Copynumber: 3.6 Consensus size: 39
263612 TCACTGCTTA
* * * *
263622 TGCTCGACCTATAGCGGCGCTTGTTTAAAATCACCGCTAA
1 TGCTCGACCTATAGCGGCG-TTTTTTAAAAGCGCCGCTAG
* * *
263662 TGCTCGACTTATAGCGGTGTTTTTAAACAAGCGCCGCTAG
1 TGCTCGACCTATAGCGGCGTTTTTTAA-AAGCGCCGCTAG
* *
263702 TGCTCGACCTATAGCGGCGTTTTTTAAGAAGCGTCACT-G
1 TGCTCGACCTATAGCGGCGTTTTTTAA-AAGCGCCGCTAG
* * *
263741 ATGCCCGAGCTATAGCGACGTTTTTT
1 -TGCTCGACCTATAGCGGCGTTTTTT
263767 GTCCAAACGC
Statistics
Matches: 87, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
39 7 0.08
40 80 0.92
ACGTcount: A:0.22, C:0.24, G:0.23, T:0.30
Consensus pattern (39 bp):
TGCTCGACCTATAGCGGCGTTTTTTAAAAGCGCCGCTAG
Found at i:263755 original size:80 final size:80
Alignment explanation
Indices: 263595--263765 Score: 186
Period size: 80 Copynumber: 2.1 Consensus size: 80
263585 TTAAATTTTT
* * * *
263595 GCGGCGTTTTTAAACAATCACTGCTTATGCTCGACCTATAGCGGCGCTTGTTTAAAATCACCGCT
1 GCGGCGTTTTTAAACAAGCACCGCTTATGCTCGACCTATAGCGGCGCTTGTTTAAAAGCACCACT
*
263660 AATGCTCGACTTATA
66 AATGCCCGACTTATA
* * * **
263675 GCGGTGTTTTTAAACAAGCGCCGC-TAGTGCTCGACCTATAGCGGCG-TTTTTTAAGAAGCGTCA
1 GCGGCGTTTTTAAACAAGCACCGCTTA-TGCTCGACCTATAGCGGCGCTTGTTTAA-AAGCACCA
*
263738 CTGATGCCCGAGC-TATA
64 CTAATGCCCGA-CTTATA
*
263755 GCGACGTTTTT
1 GCGGCGTTTTT
263766 TGTCCAAACG
Statistics
Matches: 75, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
79 9 0.12
80 65 0.87
81 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.23, T:0.30
Consensus pattern (80 bp):
GCGGCGTTTTTAAACAAGCACCGCTTATGCTCGACCTATAGCGGCGCTTGTTTAAAAGCACCACT
AATGCCCGACTTATA
Found at i:264949 original size:18 final size:19
Alignment explanation
Indices: 264917--264959 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
264907 TTTAAAATTT
264917 TTTTATAAATAATTTAAAA
1 TTTTATAAATAATTTAAAA
* *
264936 TTTTA-AAATTATTTTAAA
1 TTTTATAAATAATTTAAAA
264954 TTTTAT
1 TTTTAT
264960 TTTATAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 16 0.76
19 5 0.24
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (19 bp):
TTTTATAAATAATTTAAAA
Found at i:268643 original size:18 final size:18
Alignment explanation
Indices: 268608--268652 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
268598 GCAATAAGTG
*
268608 ACGTTTTGAAAATTAATA
1 ACGTTTTGAAAATGAATA
268626 ACGTTTTGAAAGA-GAATA
1 ACGTTTTGAAA-ATGAATA
268644 AC-TTTTGAA
1 ACGTTTTGAA
268653 TACGAATCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 7 0.28
18 17 0.68
19 1 0.04
ACGTcount: A:0.42, C:0.07, G:0.16, T:0.36
Consensus pattern (18 bp):
ACGTTTTGAAAATGAATA
Found at i:270103 original size:12 final size:12
Alignment explanation
Indices: 270086--270112 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
270076 GGTGGCATTG
270086 TTTTGTTTTTCT
1 TTTTGTTTTTCT
270098 TTTTGTTTTTCT
1 TTTTGTTTTTCT
270110 TTT
1 TTT
270113 CCATTTTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.00, C:0.07, G:0.07, T:0.85
Consensus pattern (12 bp):
TTTTGTTTTTCT
Found at i:271328 original size:5 final size:5
Alignment explanation
Indices: 271295--271368 Score: 53
Period size: 5 Copynumber: 14.8 Consensus size: 5
271285 TTTGTGTAAC
* * *
271295 TCTGT TCAGT TCTGCT T-TGT T-TCGT TCTGT TCTGC TCTGT TCTGT TCTAT
1 TCTGT TCTGT TCTG-T TCTGT TCT-GT TCTGT TCTGT TCTGT TCTGT TCTGT
** * *
271345 AATGT TCTGC TCTGT CCTGT TCTG
1 TCTGT TCTGT TCTGT TCTGT TCTG
271369 GTTGGTTTGT
Statistics
Matches: 52, Mismatches: 14, Indels: 6
0.72 0.19 0.08
Matches are distributed among these distances:
4 3 0.06
5 46 0.88
6 3 0.06
ACGTcount: A:0.05, C:0.23, G:0.19, T:0.53
Consensus pattern (5 bp):
TCTGT
Found at i:271341 original size:20 final size:20
Alignment explanation
Indices: 271295--271342 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
271285 TTTGTGTAAC
* *
271295 TCTGTTCAGTTCTGCTTTGT
1 TCTGTTCTGTTCTGCTCTGT
271315 T-TCGTTCTGTTCTGCTCTGT
1 TCT-GTTCTGTTCTGCTCTGT
271335 TCTGTTCT
1 TCTGTTCT
271343 ATAATGTTCT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 1 0.04
20 22 0.92
21 1 0.04
ACGTcount: A:0.02, C:0.23, G:0.19, T:0.56
Consensus pattern (20 bp):
TCTGTTCTGTTCTGCTCTGT
Found at i:273611 original size:26 final size:24
Alignment explanation
Indices: 273582--273649 Score: 70
Period size: 23 Copynumber: 2.8 Consensus size: 24
273572 GCCATGATCA
*
273582 GTAAGCTCAT-TCTGAGTTGAAGAACG
1 GTAAGCTCATATC-GAGCTG-A-AACG
273608 GTAAGCTC-TATCGAGCTGAAACG
1 GTAAGCTCATATCGAGCTGAAACG
*
273631 GTAAGCTCATA-AGAGCTGA
1 GTAAGCTCATATCGAGCTGA
273650 TATATCAGTA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
23 19 0.50
24 3 0.08
25 6 0.16
26 10 0.26
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (24 bp):
GTAAGCTCATATCGAGCTGAAACG
Found at i:280823 original size:40 final size:40
Alignment explanation
Indices: 280779--280858 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
280769 TAAGTAAGCA
280779 TTAAAGCTTAGTAAGCCCGTATAATAGAATTAAACTTACC
1 TTAAAGCTTAGTAAGCCCGTATAATAGAATTAAACTTACC
*
280819 TTAAAGCTTAGTAAGCTCGTATAATAGAATTAAACTTACC
1 TTAAAGCTTAGTAAGCCCGTATAATAGAATTAAACTTACC
280859 ACAATACATA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.40, C:0.16, G:0.12, T:0.31
Consensus pattern (40 bp):
TTAAAGCTTAGTAAGCCCGTATAATAGAATTAAACTTACC
Found at i:286897 original size:39 final size:38
Alignment explanation
Indices: 286854--286938 Score: 91
Period size: 39 Copynumber: 2.2 Consensus size: 38
286844 TTAAAATAAT
* *
286854 TAAAAATTTAAAAATATTATAAAATATTA-TAGAAAATCA
1 TAAAAATTTAAAAA-ATTATAAAA-ATTACAAAAAAATCA
* * *
286893 TAAAAAAATTATAAAATTATAAAAATTACAAAAAAATTA
1 T-AAAAATTTAAAAAATTATAAAAATTACAAAAAAATCA
286932 TAAAAAT
1 TAAAAAT
286939 ATATAAAAGT
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
38 9 0.24
39 18 0.47
40 11 0.29
ACGTcount: A:0.66, C:0.02, G:0.01, T:0.31
Consensus pattern (38 bp):
TAAAAATTTAAAAAATTATAAAAATTACAAAAAAATCA
Found at i:286941 original size:8 final size:9
Alignment explanation
Indices: 286854--286946 Score: 73
Period size: 10 Copynumber: 9.6 Consensus size: 9
286844 TTAAAATAAT
286854 TAAAAATT-
1 TAAAAATTA
286862 TAAAAATATTA
1 T-AAAA-ATTA
286873 TAAAATATTA
1 TAAAA-ATTA
286883 TAGAAAATCATA
1 TA-AAAAT--TA
*
286895 AAAAAATTA
1 TAAAAATTA
286904 T-AAAATTA
1 TAAAAATTA
286912 TAAAAATTACA
1 TAAAAATT--A
*
286923 AAAAAATTA
1 TAAAAATTA
286932 TAAAAATATA
1 TAAAAAT-TA
286942 TAAAA
1 TAAAA
286947 GTGAAAAATT
Statistics
Matches: 71, Mismatches: 4, Indels: 18
0.76 0.04 0.19
Matches are distributed among these distances:
8 9 0.13
9 19 0.27
10 23 0.32
11 17 0.24
12 3 0.04
ACGTcount: A:0.67, C:0.02, G:0.01, T:0.30
Consensus pattern (9 bp):
TAAAAATTA
Found at i:286954 original size:28 final size:28
Alignment explanation
Indices: 286863--286948 Score: 84
Period size: 28 Copynumber: 2.9 Consensus size: 28
286853 TTAAAAATTT
* *
286863 AAAAATATTATAAAATATTATAGAAAA-TCAT
1 AAAAAAATTATAAAA-A-TATA-AAAAGT-AC
* *
286894 AAAAAAATTATAAAATTATAAAAATTAC
1 AAAAAAATTATAAAAATATAAAAAGTAC
286922 AAAAAAATTATAAAAATATATAAAAGT
1 AAAAAAATTATAAAAATATA-AAAAGT
286949 GAAAAATTTT
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
28 24 0.50
29 10 0.21
31 14 0.29
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.29
Consensus pattern (28 bp):
AAAAAAATTATAAAAATATAAAAAGTAC
Found at i:290059 original size:22 final size:22
Alignment explanation
Indices: 290010--290052 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
290000 TGGACAAGCC
*
290010 ACCACATAATTGCCGATAAACG
1 ACCACATAATTGCAGATAAACG
290032 ACCACATAATTGCAGATAAAC
1 ACCACATAATTGCAGATAAAC
290053 TGCCACAGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.44, C:0.26, G:0.12, T:0.19
Consensus pattern (22 bp):
ACCACATAATTGCAGATAAACG
Found at i:290317 original size:18 final size:19
Alignment explanation
Indices: 290287--290323 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
290277 TTTGCACAAA
*
290287 CATCACAATCACATAATAT
1 CATCACAATCACACAATAT
290306 CATCAC-ATCACACAATAT
1 CATCACAATCACACAATAT
290324 ACTTTTCAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.46, C:0.30, G:0.00, T:0.24
Consensus pattern (19 bp):
CATCACAATCACACAATAT
Found at i:297959 original size:96 final size:96
Alignment explanation
Indices: 297795--298180 Score: 745
Period size: 96 Copynumber: 4.0 Consensus size: 96
297785 CTGAAACAAA
*
297795 TAAATTCAGATTTTGGCTTTTGGGTTTAATTAAGAATGTCTAATATTTTAAATAGATTAGTTGAA
1 TAAATTCAGATTTTGACTTTTGGGTTTAATTAAGAATGTCTAATATTTTAAATAGATTAGTTGAA
297860 ACAAAATGCCACCAAAATGACCTCTTTTGTG
66 ACAAAATGCCACCAAAATGACCTCTTTTGTG
297891 TAAATTCAGATTTTGACTTTTGGGTTTAATTAAGAATGTCTAATATTTTAAATAGATTAGTTGAA
1 TAAATTCAGATTTTGACTTTTGGGTTTAATTAAGAATGTCTAATATTTTAAATAGATTAGTTGAA
297956 ACAAAATGCCACCAAAATGACCTCTTTTGTG
66 ACAAAATGCCACCAAAATGACCTCTTTTGTG
297987 TAAATTCAGATTTTGACTTTTGGGTTTAATTAAGAATGTCTAATATTTTAAATAGATTAGTTGAA
1 TAAATTCAGATTTTGACTTTTGGGTTTAATTAAGAATGTCTAATATTTTAAATAGATTAGTTGAA
298052 ACAAAATGCCACCAAAATGACCTCTTTTGTG
66 ACAAAATGCCACCAAAATGACCTCTTTTGTG
298083 TAAATTCAGATTTTGACTTTTGGGTTTAATTAAGAATGTCTAATATTTTAAATAGATTAGTTGAA
1 TAAATTCAGATTTTGACTTTTGGGTTTAATTAAGAATGTCTAATATTTTAAATAGATTAGTTGAA
* *
298148 ACAAAATGCCGCCAAAGTGACCTCTTTTGTG
66 ACAAAATGCCACCAAAATGACCTCTTTTGTG
298179 TA
1 TA
298181 GATTAGTTTA
Statistics
Matches: 287, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
96 287 1.00
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.39
Consensus pattern (96 bp):
TAAATTCAGATTTTGACTTTTGGGTTTAATTAAGAATGTCTAATATTTTAAATAGATTAGTTGAA
ACAAAATGCCACCAAAATGACCTCTTTTGTG
Found at i:300601 original size:18 final size:19
Alignment explanation
Indices: 300560--300603 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
300550 TGTTAATTTC
*
300560 ATGAATTATATAATGTATG
1 ATGAAATATATAATGTATG
*
300579 ATGAAATATAT-ATTTATG
1 ATGAAATATATAATGTATG
*
300597 TTGAAAT
1 ATGAAAT
300604 GAGAATAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 12 0.55
19 10 0.45
ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43
Consensus pattern (19 bp):
ATGAAATATATAATGTATG
Found at i:300739 original size:46 final size:46
Alignment explanation
Indices: 300672--301703 Score: 1830
Period size: 46 Copynumber: 22.6 Consensus size: 46
300662 TTTGAGTACT
300672 TCTGATCAAGTGACAAAGTGATAAGTGGTAACTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAACTTTAGCTACACTTA
*
300718 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAACTTTAGCTACACTTA
*
300764 TCTGATCAAGTGACAAAGTGATAAGTGG-AAGCTTTAGCTACACCTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAA-CTTTAGCTACACTTA
* *
300810 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACCTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAACTTTAGCTACACTTA
* *
300856 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-CTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAACTTTAGCTACACTTA
300901 TCTGATTCAAGTGACAAAGTGATAAGTGGTAACTTTAGCTACACTTA
1 TCTGA-TCAAGTGACAAAGTGATAAGTGGTAACTTTAGCTACACTTA
300948 TCTGATCAAGTGACAAAGTGATAAGTGGTAACTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAACTTTAGCTACACTTA
300994 TCTGATCAAGTGACAAAGTGATAAGTGGTAACTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAACTTTAGCTACACTTA
301040 TCTGATCAAGTGACAAAGTGATAAGTGGTAACTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAACTTTAGCTACACTTA
301086 TCTGATCAAGTGACAAAGTGATAAGTGGTAACTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAACTTTAGCTACACTTA
301132 TCTGATCAAGTGACAAAGTGATAAGTGGTAACTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAACTTTAGCTACACTTA
301178 TCTGATCAAGTGACAAAGTGATAAGTGGTAACTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAACTTTAGCTACACTTA
301224 TCTGATCAAGTGACAAAGTGATAAGTGGTAACTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAACTTTAGCTACACTTA
301270 TCTGATCAAGTGACAAAGTGATAAGTGGTAACTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAACTTTAGCTACACTTA
301316 TCTGATCAAGTGACAAAGTGATAAGTGGTAACTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAACTTTAGCTACACTTA
301362 TCTGATCAAGTGACAAAGTGATAAGTGGTAACTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAACTTTAGCTACACTTA
301408 TCTGATCAAGTGACAAAGTGATAAGTGGTAACTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAACTTTAGCTACACTTA
* *
301454 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-CTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAACTTTAGCTACACTTA
* *
301499 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-CTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAACTTTAGCTACACTTA
* *
301544 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-CTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAACTTTAGCTACACTTA
* *
301589 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-CTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAACTTTAGCTACACTTA
* *
301634 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-CTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAACTTTAGCTACACTTA
*
301679 TCTGATC-AGGGAC-AAGTGATAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTG
301704 ATCATACGTA
Statistics
Matches: 971, Mismatches: 11, Indels: 11
0.98 0.01 0.01
Matches are distributed among these distances:
43 12 0.01
44 5 0.01
45 216 0.22
46 720 0.74
47 18 0.02
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (46 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAACTTTAGCTACACTTA
Found at i:304220 original size:17 final size:18
Alignment explanation
Indices: 304200--304234 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
304190 TTTTATTCTA
304200 GTTTTGGTTT-AAGTTTT
1 GTTTTGGTTTAAAGTTTT
*
304217 GTTTTGTTTTAAAGTTTT
1 GTTTTGGTTTAAAGTTTT
304235 AAAGTTTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.14, C:0.00, G:0.20, T:0.66
Consensus pattern (18 bp):
GTTTTGGTTTAAAGTTTT
Found at i:305383 original size:23 final size:23
Alignment explanation
Indices: 305334--305383 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
305324 CACACCAAAC
*
305334 TTTGGACAGCATAAATACATCAA
1 TTTGGACAGCATAAATACAACAA
* * *
305357 TTTGGGCAGCATATATACAACAG
1 TTTGGACAGCATAAATACAACAA
305380 TTTG
1 TTTG
305384 AGCAACATTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (23 bp):
TTTGGACAGCATAAATACAACAA
Found at i:305867 original size:43 final size:42
Alignment explanation
Indices: 305780--305903 Score: 126
Period size: 43 Copynumber: 2.9 Consensus size: 42
305770 AACTCGTACA
* * * *
305780 ATGCCAACGTCCTAGACGTGGTCTTACATGTAATCACGTATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAACAC-AATCG
* *
305823 ATGTC-ACTGTCCCAGACATGGTCTTACACGTAAACACAAGTCG
1 ATGCCAAC-GTCCCAGACGTGGTCTTACACGTAAACACAA-TCG
* *
305866 ATGCCAACATCCCAGATGTGGTCTTACACG-ATAACACA
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTA-AACACA
305904 TCTCGAAAAT
Statistics
Matches: 67, Mismatches: 10, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
42 4 0.06
43 61 0.91
44 2 0.03
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAAACACAATCG
Found at i:311884 original size:23 final size:23
Alignment explanation
Indices: 311835--311884 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
311825 CACACCAAAC
*
311835 TTTGGACAGCATAAATACATCAA
1 TTTGGACAGCATAAATACAACAA
* * *
311858 TTTGGGCAGCATATATACAACAG
1 TTTGGACAGCATAAATACAACAA
311881 TTTG
1 TTTG
311885 AGCAACATTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (23 bp):
TTTGGACAGCATAAATACAACAA
Found at i:311967 original size:23 final size:23
Alignment explanation
Indices: 311938--312108 Score: 137
Period size: 23 Copynumber: 7.3 Consensus size: 23
311928 TTAAGCATCA
* *
311938 AAATTGGACAGCATATATGTAAC
1 AAATTGGGCAGCATATATGTATC
* * * *
311961 AAATTGGGCAACATTTAAGCATC
1 AAATTGGGCAGCATATATGTATC
*
311984 AAAATTGGGCAGCATATATGTAGC
1 -AAATTGGGCAGCATATATGTATC
* * * *
312008 AAATTGGGTAGCATTTAAGCATC
1 AAATTGGGCAGCATATATGTATC
* *
312031 AAAATTGGACAGCATATATGTAGC
1 -AAATTGGGCAGCATATATGTATC
* *
312055 AAATTGGGCAGCATTTAAT-CATC
1 AAATTGGGCAGCATAT-ATGTATC
* * *
312078 AAAATTGGACAGCATACATGTAAC
1 -AAATTGGGCAGCATATATGTATC
312102 AAATTGG
1 AAATTGG
312109 TTCAACTCAT
Statistics
Matches: 112, Mismatches: 31, Indels: 10
0.73 0.20 0.07
Matches are distributed among these distances:
23 60 0.54
24 52 0.46
ACGTcount: A:0.40, C:0.14, G:0.20, T:0.26
Consensus pattern (23 bp):
AAATTGGGCAGCATATATGTATC
Found at i:311990 original size:47 final size:47
Alignment explanation
Indices: 311921--312108 Score: 304
Period size: 47 Copynumber: 4.0 Consensus size: 47
311911 CAGCATATAT
311921 GCAACATTTAAGCATCAAAATTGGACAGCATATATGTAACAAATTGG
1 GCAACATTTAAGCATCAAAATTGGACAGCATATATGTAACAAATTGG
* *
311968 GCAACATTTAAGCATCAAAATTGGGCAGCATATATGTAGCAAATTGG
1 GCAACATTTAAGCATCAAAATTGGACAGCATATATGTAACAAATTGG
* * *
312015 GTAGCATTTAAGCATCAAAATTGGACAGCATATATGTAGCAAATTGG
1 GCAACATTTAAGCATCAAAATTGGACAGCATATATGTAACAAATTGG
* * *
312062 GCAGCATTTAATCATCAAAATTGGACAGCATACATGTAACAAATTGG
1 GCAACATTTAAGCATCAAAATTGGACAGCATATATGTAACAAATTGG
312109 TTCAACTCAT
Statistics
Matches: 132, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 132 1.00
ACGTcount: A:0.40, C:0.15, G:0.19, T:0.26
Consensus pattern (47 bp):
GCAACATTTAAGCATCAAAATTGGACAGCATATATGTAACAAATTGG
Found at i:311991 original size:24 final size:24
Alignment explanation
Indices: 311925--312092 Score: 153
Period size: 24 Copynumber: 7.1 Consensus size: 24
311915 ATATATGCAA
*
311925 CATTTAAGCATCAAAATTGGACAG
1 CATTTAAGCATCAAAATTGGGCAG
* * * * *
311949 CATATATGTAAC-AAATTGGGCAA
1 CATTTAAGCATCAAAATTGGGCAG
311972 CATTTAAGCATCAAAATTGGGCAG
1 CATTTAAGCATCAAAATTGGGCAG
* * * * *
311996 CATATATGTAGC-AAATTGGGTAG
1 CATTTAAGCATCAAAATTGGGCAG
*
312019 CATTTAAGCATCAAAATTGGACAG
1 CATTTAAGCATCAAAATTGGGCAG
* * * *
312043 CATATATGTAGC-AAATTGGGCAG
1 CATTTAAGCATCAAAATTGGGCAG
* *
312066 CATTTAATCATCAAAATTGGACAG
1 CATTTAAGCATCAAAATTGGGCAG
312090 CAT
1 CAT
312093 ACATGTAACA
Statistics
Matches: 108, Mismatches: 33, Indels: 6
0.73 0.22 0.04
Matches are distributed among these distances:
23 52 0.48
24 56 0.52
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (24 bp):
CATTTAAGCATCAAAATTGGGCAG
Found at i:313042 original size:43 final size:44
Alignment explanation
Indices: 312955--313068 Score: 130
Period size: 43 Copynumber: 2.7 Consensus size: 44
312945 AACTCGTACA
* * *
312955 ATGCCAA-TGTCCCAGACGTGGTCTTACATGTAATCACGTATCG
1 ATGCCAACTGTCCCAGACGTGGTCTTACACGTAAACACGAATCG
*
312998 ATGGC-ACTGTCCCAGACAG-GGTCTTACACGTAAACAC-AAGTCG
1 ATGCCAACTGTCCCAGAC-GTGGTCTTACACGTAAACACGAA-TCG
*
313041 ATGCCAAC-GTCCCAGATGTGGTCTTACA
1 ATGCCAACTGTCCCAGACGTGGTCTTACA
313069 TGATAACACA
Statistics
Matches: 60, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
42 3 0.05
43 54 0.90
44 3 0.05
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (44 bp):
ATGCCAACTGTCCCAGACGTGGTCTTACACGTAAACACGAATCG
Done.