Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 103 of 316
Found at i:32090491 original size:43 final size:43
Alignment explanation
Indices: 32090371--32090537 Score: 158
Period size: 43 Copynumber: 3.9 Consensus size: 43
32090361 AGGTCACACA
* * **
32090371 ATGCC-ATATCCCAGATATGGTCTTACACGTTATCACATATTG
1 ATGCCAATATCCCAGACATGGTCTTACACGTAATCACATAACG
* * * * ** *
32090413 ATACCACTATCCCAAACAGGGTCTTACACAAAATCATATAACG
1 ATGCCAATATCCCAGACATGGTCTTACACGTAATCACATAACG
* * *
32090456 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACA-ATACA
1 ATGCCAATATCCCAGACATGGTCTTACACGTAATCACATA-ACG
* * *
32090499 ATGCCAATGTCCCAGACATGGCCTTACATGTAATCACAT
1 ATGCCAATATCCCAGACATGGTCTTACACGTAATCACAT
32090538 CTCGATAACC
Statistics
Matches: 100, Mismatches: 22, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
42 5 0.05
43 95 0.95
ACGTcount: A:0.34, C:0.26, G:0.13, T:0.26
Consensus pattern (43 bp):
ATGCCAATATCCCAGACATGGTCTTACACGTAATCACATAACG
Found at i:32092270 original size:31 final size:31
Alignment explanation
Indices: 32092223--32092308 Score: 147
Period size: 31 Copynumber: 2.8 Consensus size: 31
32092213 TCAATCTCAG
*
32092223 CATAT-ACTGGGTCGAAGCCTTTACATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
*
32092253 CATATCACTGGGCCGAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
32092284 CATATCACTGGGCCGAAGCCTTTAC
1 CATATCACTGGGCCGAAGCCTTTAC
32092309 TGTAACAATA
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
30 5 0.10
31 47 0.90
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.33
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTACATTATT
Found at i:32092547 original size:25 final size:26
Alignment explanation
Indices: 32092519--32092597 Score: 81
Period size: 26 Copynumber: 3.1 Consensus size: 26
32092509 GCCTAGCCTC
*
32092519 TTTTAAT-GACTAGGGCAAAAGCCCT
1 TTTTAATAAACTAGGGCAAAAGCCCT
* *
32092544 TTTTGATAAACTGGGGCAAAAGCCCT
1 TTTTAATAAACTAGGGCAAAAGCCCT
*** *
32092570 TTTCGGTAAACTGGGGC-AAAGCCCT
1 TTTTAATAAACTAGGGCAAAAGCCCT
32092595 TTT
1 TTT
32092598 CGGTAATTGG
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 17 0.35
26 31 0.65
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
TTTTAATAAACTAGGGCAAAAGCCCT
Found at i:32092598 original size:25 final size:26
Alignment explanation
Indices: 32092531--32092621 Score: 125
Period size: 26 Copynumber: 3.6 Consensus size: 26
32092521 TTAATGACTA
* *
32092531 GGGCAAAAGCCCTTTTTGATAAACTG
1 GGGCAAAAGCCCTTTTCGGTAAACTG
32092557 GGGCAAAAGCCCTTTTCGGTAAACTG
1 GGGCAAAAGCCCTTTTCGGTAAACTG
*
32092583 GGGC-AAAGCCCTTTTCGGT-AATTG
1 GGGCAAAAGCCCTTTTCGGTAAACTG
*
32092607 GGGC-ATAGCCCTTTT
1 GGGCAAAAGCCCTTTT
32092622 ACACTTCCTC
Statistics
Matches: 61, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
24 18 0.30
25 15 0.25
26 28 0.46
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.27
Consensus pattern (26 bp):
GGGCAAAAGCCCTTTTCGGTAAACTG
Found at i:32108836 original size:27 final size:27
Alignment explanation
Indices: 32108806--32108983 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
32108796 ATATTGAGTC
* * * *
32108806 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
32108833 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
32108860 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
32108888 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
32108915 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
32108942 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
32108969 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32108984 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:32108945 original size:82 final size:81
Alignment explanation
Indices: 32108827--32108982 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
32108817 TGCTATATAA
* *
32108827 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
32108892 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
32108909 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
32108973 CACTTAGTGC
65 CACTTAGTGC
32108983 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:32111644 original size:47 final size:48
Alignment explanation
Indices: 32111570--32111675 Score: 142
Period size: 47 Copynumber: 2.2 Consensus size: 48
32111560 ACTAAGAACA
* * * * *
32111570 GATTGACAGAGGGAAAAAGAACAAGAAGCAATTAGT-TAAGGGAAATC
1 GATTGAGAAAGGGAAAAAGAACAAGAAGCAATCAGTCAAAGGGAAACC
*
32111617 GATTGAGAAAGGGAAAAAGAACTAGAAGCAATCAGTCAAAGGGAAACC
1 GATTGAGAAAGGGAAAAAGAACAAGAAGCAATCAGTCAAAGGGAAACC
*
32111665 AATTGAGAAAG
1 GATTGAGAAAG
32111676 AGGGAAGAAG
Statistics
Matches: 51, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
47 32 0.63
48 19 0.37
ACGTcount: A:0.50, C:0.09, G:0.27, T:0.13
Consensus pattern (48 bp):
GATTGAGAAAGGGAAAAAGAACAAGAAGCAATCAGTCAAAGGGAAACC
Found at i:32119757 original size:27 final size:26
Alignment explanation
Indices: 32119711--32119770 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
32119701 GCGAGGCTGC
32119711 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGACAAAGTCACCAGA-A
* * *
32119738 CAGATATTGTGGCTAGGTCACCAGAA
1 CAGATATTGTGACAAAGTCACCAGAA
*
32119764 TAGATAT
1 CAGATAT
32119771 ATATATGCGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 7 0.24
27 22 0.76
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.25
Consensus pattern (26 bp):
CAGATATTGTGACAAAGTCACCAGAA
Found at i:32120549 original size:27 final size:27
Alignment explanation
Indices: 32120512--32120629 Score: 139
Period size: 27 Copynumber: 4.4 Consensus size: 27
32120502 GGGGCAAAAT
* *
32120512 GGTAATT-TACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
32120538 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
32120565 GGTATTTATACACTACAATGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
32120592 GGTAAATCTACCTTACAATGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
32120619 GGTAATTCTAC
1 GGTAATTCTAC
32120630 AACTTATCCA
Statistics
Matches: 77, Mismatches: 14, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
26 7 0.09
27 70 0.91
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:32125489 original size:26 final size:27
Alignment explanation
Indices: 32125460--32125513 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
32125450 TCACACAAGT
*
32125460 TAGTCATTT-ACGCACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
32125486 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
32125513 T
1 T
32125514 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:32125545 original size:27 final size:27
Alignment explanation
Indices: 32125515--32125658 Score: 157
Period size: 27 Copynumber: 5.3 Consensus size: 27
32125505 GGGCAAAATG
* * *
32125515 GTAATTTTACCCCACAAGGGTATCTCA
1 GTAATTTTACCCTACAGGGGTATTTCA
*
32125542 GTAATTTTATCCTACAGGGGTATTTC-
1 GTAATTTTACCCTACAGGGGTATTTCA
* *
32125568 G-ATATTTCTACCCTACAAGGGTATTTCG
1 GTA-ATTT-TACCCTACAGGGGTATTTCA
* *
32125596 GTAATTCTATCCTACAGGGGTATTTCA
1 GTAATTTTACCCTACAGGGGTATTTCA
* * *
32125623 GTAATTCTACCTTACAGGGGTATTTCG
1 GTAATTTTACCCTACAGGGGTATTTCA
32125650 GTAATTTTA
1 GTAATTTTA
32125659 TAACTTATCC
Statistics
Matches: 99, Mismatches: 14, Indels: 8
0.82 0.12 0.07
Matches are distributed among these distances:
25 1 0.01
26 5 0.05
27 88 0.89
28 4 0.04
29 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.38
Consensus pattern (27 bp):
GTAATTTTACCCTACAGGGGTATTTCA
Found at i:32125587 original size:54 final size:54
Alignment explanation
Indices: 32125518--32125659 Score: 198
Period size: 54 Copynumber: 2.6 Consensus size: 54
32125508 CAAAATGGTA
* * *
32125518 ATTT-TACCCCACAAGGGTATCTCAGTAATTTTATCCTACAGGGGTATTTC-GAT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTTTATCCTACAGGGGTATTTCAG-T
*
32125571 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTATCCTACAGGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTTTATCCTACAGGGGTATTTCAGT
* * *
32125625 AATTCTACCTTACAGGGGTATTTCGGTAATTTTAT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTTTAT
32125660 AACTTATCCA
Statistics
Matches: 79, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
53 4 0.05
54 74 0.94
55 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.38
Consensus pattern (54 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTTTATCCTACAGGGGTATTTCAGT
Found at i:32126843 original size:26 final size:26
Alignment explanation
Indices: 32126811--32126861 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
32126801 TACAACCTGA
32126811 GTAAGTTAAAGAATTTTTGATTTATT
1 GTAAGTTAAAGAATTTTTGATTTATT
*
32126837 GTAAGTTAAAGAATTTTTTATTTAT
1 GTAAGTTAAAGAATTTTTGATTTAT
32126862 AGTGATGCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (26 bp):
GTAAGTTAAAGAATTTTTGATTTATT
Found at i:32134721 original size:15 final size:15
Alignment explanation
Indices: 32134701--32134769 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
32134691 GTATCTTGGG
32134701 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
32134716 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
32134731 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
32134746 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
32134761 TTTCTTTAT
1 TTTCTTTAT
32134770 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:32134770 original size:30 final size:30
Alignment explanation
Indices: 32134692--32134779 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
32134682 CATAATATCG
* * * *
32134692 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
32134722 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
32134752 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
32134780 TATTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:32147126 original size:44 final size:44
Alignment explanation
Indices: 32147067--32147175 Score: 200
Period size: 44 Copynumber: 2.5 Consensus size: 44
32147057 GCTATAATTA
* *
32147067 TATCACACACTTAGTGCCATTACCTTAAACTAAACTTATATTGG
1 TATCGCACACATAGTGCCATTACCTTAAACTAAACTTATATTGG
32147111 TATCGCACACATAGTGCCATTACCTTAAACTAAACTTATATTGG
1 TATCGCACACATAGTGCCATTACCTTAAACTAAACTTATATTGG
32147155 TATCGCACACATAGTGCCATT
1 TATCGCACACATAGTGCCATT
32147176 TACTCAGCCA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
44 63 1.00
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.32
Consensus pattern (44 bp):
TATCGCACACATAGTGCCATTACCTTAAACTAAACTTATATTGG
Found at i:32150452 original size:43 final size:43
Alignment explanation
Indices: 32150384--32150510 Score: 159
Period size: 43 Copynumber: 3.0 Consensus size: 43
32150374 TAAAGCTCGA
*
32150384 ACAATGCCATATCCCAGATATGGTCTTACATGTTATCACATAT
1 ACAATGCCATATCCCAGATATGGTCTTACATGTAATCACATAT
* * * *
32150427 A-GATGCCACTATCCCAGACAGGGTCTTACACGTAATCACA-AT
1 ACAATGCCA-TATCCCAGATATGGTCTTACATGTAATCACATAT
* *
32150469 ACAATGCCAATGTCCCAGATATGGTCTTACATGAAATCACAT
1 ACAATGCC-ATATCCCAGATATGGTCTTACATGTAATCACAT
32150511 CTTGATAACC
Statistics
Matches: 69, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
42 9 0.13
43 59 0.86
44 1 0.01
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.27
Consensus pattern (43 bp):
ACAATGCCATATCCCAGATATGGTCTTACATGTAATCACATAT
Found at i:32160026 original size:23 final size:26
Alignment explanation
Indices: 32159999--32160051 Score: 67
Period size: 23 Copynumber: 2.2 Consensus size: 26
32159989 ACTTCATACC
*
32159999 CATGATTTTACCATG-CAA-AT-TCT
1 CATGATATTACCATGCCAATATCTCT
*
32160022 CATGATATTCCCATGCCAATATCTCT
1 CATGATATTACCATGCCAATATCTCT
32160048 CATG
1 CATG
32160052 TAATTTGTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 13 0.52
24 3 0.12
25 2 0.08
26 7 0.28
ACGTcount: A:0.28, C:0.26, G:0.09, T:0.36
Consensus pattern (26 bp):
CATGATATTACCATGCCAATATCTCT
Found at i:32167451 original size:50 final size:49
Alignment explanation
Indices: 32167341--32167518 Score: 203
Period size: 50 Copynumber: 3.6 Consensus size: 49
32167331 CTGGTACGCA
* *** * *
32167341 TAGTAGCCTGCACATAGTACTACACATACAACCAATTATCCGATACATG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCAATACACG
* * *
32167390 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC-AATTATCCAATACACG
* * * * *
32167440 TAGTAGCCTGCACTTAGTACTACACATGTGATCGAAGTTATCGAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-TTATCCAATACACG
32167491 TAGTAGCCTGCACTTAGTACTACACATG
1 TAGTAGCCTGCACTTAGTACTACACATG
32167519 CAACCTCACA
Statistics
Matches: 110, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
49 28 0.25
50 44 0.40
51 38 0.35
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCAATACACG
Found at i:32173681 original size:40 final size:40
Alignment explanation
Indices: 32173410--32173674 Score: 333
Period size: 40 Copynumber: 6.7 Consensus size: 40
32173400 TTGAATGATG
* * * *
32173410 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
32173450 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
32173490 TCTGGGCTAAG-CCCAAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
32173529 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
32173569 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
32173609 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
32173650 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32173675 AACGAGTAGC
Statistics
Matches: 197, Mismatches: 21, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
39 33 0.17
40 154 0.78
41 10 0.05
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:32173681 original size:80 final size:78
Alignment explanation
Indices: 32173411--32173707 Score: 314
Period size: 80 Copynumber: 3.7 Consensus size: 78
32173401 TGAATGATGT
* * * * * **
32173411 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTAC-GAGTTACTAAATCCGGGTTAAG-TCCGAAGGCATTT
* *
32173475 GTGCGAGATACTAATT
64 GTGCGAGTTACTAA-A
* * **
32173491 CTGGGCTAAG-CCCAAAGGCATTTGTACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAATCCGGGTTAAG-TCCGAAGGCATTTG
32173555 TGCGAGTTACTAAA
65 TGCGAGTTACTAAA
* *
32173569 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 -CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAATCCGGGTTAAGT-CCGAAGGCATTT
32173634 GTGCGAGTTACTATAA
64 GTGCGAGTTACTA-AA
* * * *
32173650 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTA-CTAAATCCGGGTT-AAGTCCGAAGG
32173708 TACGTGATTT
Statistics
Matches: 189, Mismatches: 21, Indels: 15
0.84 0.09 0.07
Matches are distributed among these distances:
79 75 0.40
80 112 0.59
81 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTTGT
GCGAGTTACTAAA
Found at i:32173681 original size:120 final size:118
Alignment explanation
Indices: 32173463--32173707 Score: 307
Period size: 120 Copynumber: 2.1 Consensus size: 118
32173453 GGACTAAGAT
* *
32173463 CCGAAGGCATTTGTGCGAGATACTAATTCTGGGCTAAGCCCAAAGGCATTTGTACGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCAAAGGCATTTGTACGAGTTACTAA
** *
32173528 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CTAAATCCGGGTTAAGTC
66 ATCCGGACTAAGATCCGAAGGCATTTGAACGAG-TAGCTAAATCC-GGTTAAATC
* * * *
32173582 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAG-CCCAAAGGCATTTGTACGAGTTACTA
* * * *
32173647 TAA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATT
65 -AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTAGCTAAATCCGGTTAAATC
32173701 CCGAAGG
1 CCGAAGG
32173708 TACGTGATTT
Statistics
Matches: 109, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
119 51 0.47
120 56 0.51
121 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.26
Consensus pattern (118 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCAAAGGCATTTGTACGAGTTACTAA
ATCCGGACTAAGATCCGAAGGCATTTGAACGAGTAGCTAAATCCGGTTAAATC
Found at i:32180305 original size:42 final size:42
Alignment explanation
Indices: 32180258--32180367 Score: 125
Period size: 42 Copynumber: 2.6 Consensus size: 42
32180248 GAGATTCCGA
* *
32180258 ATAAGACCATATCTGGGATATGGCATC-AGTATG-TGATTTCGT
1 ATAAGACCATATCAGGGATATGGCATCGA-TATGAT-ATTTCAT
* * *
32180300 ATAAGACCATGTCAGGGACATGGCGTCGATATGATATTTCAT
1 ATAAGACCATATCAGGGATATGGCATCGATATGATATTTCAT
* *
32180342 GTAAGACCATATCCGGGATATGGCAT
1 ATAAGACCATATCAGGGATATGGCAT
32180368 AAGATCCATG
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
42 54 0.96
43 2 0.04
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (42 bp):
ATAAGACCATATCAGGGATATGGCATCGATATGATATTTCAT
Found at i:32181850 original size:18 final size:18
Alignment explanation
Indices: 32181823--32181857 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
32181813 AAGCAAAAGA
32181823 ATTTAA-TTTTATGAGAT
1 ATTTAATTTTTATGAGAT
32181840 ATTTGAATTTTTATGAGA
1 ATTT-AATTTTTATGAGA
32181858 CAAGGTCAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 2 0.12
19 10 0.62
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.51
Consensus pattern (18 bp):
ATTTAATTTTTATGAGAT
Found at i:32190938 original size:45 final size:45
Alignment explanation
Indices: 32190761--32190938 Score: 184
Period size: 45 Copynumber: 4.0 Consensus size: 45
32190751 ATGCTATCTC
* * * * *
32190761 ATATTGATGCCACTATCCCAGACAGGGTCTTACATG-AATCA-A-
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACACGAAATCACAT
* * * * **
32190803 ATA-CGATGCCGATGTCCCATACATGGTCTTACACGTAACCGTAT
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACACGAAATCACAT
* * * *
32190847 ACATCGATGTCAATGTCCCAGACGTGGTCTTTCACGAAATCACAT
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACACGAAATCACAT
*
32190892 ATATCAATGCCAATGTCCCAGACATGGTCTTACACGAAATCACAT
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACACGAAATCACAT
32190937 AT
1 AT
32190939 CGGAATCCTA
Statistics
Matches: 108, Mismatches: 24, Indels: 5
0.79 0.18 0.04
Matches are distributed among these distances:
41 25 0.23
42 6 0.06
43 1 0.01
44 2 0.02
45 74 0.69
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.26
Consensus pattern (45 bp):
ATATCGATGCCAATGTCCCAGACATGGTCTTACACGAAATCACAT
Found at i:32193522 original size:50 final size:50
Alignment explanation
Indices: 32193447--32193541 Score: 163
Period size: 50 Copynumber: 1.9 Consensus size: 50
32193437 AGTGTGATTA
32193447 TTTCAAATTCTCACAATCATCTTTTCTTTGAAAGTATGTCCTTCAAATTG
1 TTTCAAATTCTCACAATCATCTTTTCTTTGAAAGTATGTCCTTCAAATTG
** *
32193497 TTTCAAATTCTCACAATTGTCTTTTCTTTGAAAGTATGTCTTTCA
1 TTTCAAATTCTCACAATCATCTTTTCTTTGAAAGTATGTCCTTCA
32193542 TAAACTTGGC
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 42 1.00
ACGTcount: A:0.26, C:0.19, G:0.08, T:0.46
Consensus pattern (50 bp):
TTTCAAATTCTCACAATCATCTTTTCTTTGAAAGTATGTCCTTCAAATTG
Found at i:32195590 original size:47 final size:47
Alignment explanation
Indices: 32195521--32195613 Score: 159
Period size: 47 Copynumber: 2.0 Consensus size: 47
32195511 TGATGAGTGG
* *
32195521 GTATCGTTCCTATGAGGATTGGATGAGTGCTTTTTGTCTAAGTTATA
1 GTATCATTCCTATGAGGATTGGATGAGTGCTCTTTGTCTAAGTTATA
*
32195568 GTATCATTCGTATGAGGATTGGATGAGTGCTCTTTGTCTAAGTTAT
1 GTATCATTCCTATGAGGATTGGATGAGTGCTCTTTGTCTAAGTTAT
32195614 CATAATTGAA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.22, C:0.11, G:0.26, T:0.42
Consensus pattern (47 bp):
GTATCATTCCTATGAGGATTGGATGAGTGCTCTTTGTCTAAGTTATA
Found at i:32198476 original size:27 final size:27
Alignment explanation
Indices: 32198446--32198623 Score: 160
Period size: 27 Copynumber: 6.6 Consensus size: 27
32198436 ATATTGAGTC
* *
32198446 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
32198473 CGCACACATAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
32198500 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
32198528 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* * **
32198555 CACACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
32198582 CACACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
32198609 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32198624 GTACAATTTA
Statistics
Matches: 125, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
27 101 0.81
28 24 0.19
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:32206159 original size:27 final size:27
Alignment explanation
Indices: 32206129--32206306 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
32206119 ATATTTAGTC
* * * *
32206129 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
32206156 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
32206183 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
32206211 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
32206238 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
32206265 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
32206292 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32206307 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:32206268 original size:82 final size:81
Alignment explanation
Indices: 32206150--32206305 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
32206140 TGCTATATAA
* *
32206150 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
32206215 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
32206232 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
32206296 CACTTAGTGC
65 CACTTAGTGC
32206306 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:32209536 original size:14 final size:14
Alignment explanation
Indices: 32209517--32209543 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
32209507 ATATTTGATT
32209517 TGTTCTTAATTATG
1 TGTTCTTAATTATG
32209531 TGTTCTTAATTAT
1 TGTTCTTAATTAT
32209544 TGCTTTGATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.07, G:0.11, T:0.59
Consensus pattern (14 bp):
TGTTCTTAATTATG
Found at i:32212900 original size:34 final size:34
Alignment explanation
Indices: 32212862--32212931 Score: 124
Period size: 34 Copynumber: 2.1 Consensus size: 34
32212852 TATTGCATCT
32212862 AACTTGCAACCCAAGGAGAAAGAAG-AATTACTCC
1 AACTTGCAACCCAAGGAGAAA-AAGAAATTACTCC
32212896 AACTTGCAACCCAAGGAGAAAAAGAAATTACTCC
1 AACTTGCAACCCAAGGAGAAAAAGAAATTACTCC
32212930 AA
1 AA
32212932 GTATTAAGAG
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
33 3 0.09
34 32 0.91
ACGTcount: A:0.47, C:0.23, G:0.16, T:0.14
Consensus pattern (34 bp):
AACTTGCAACCCAAGGAGAAAAAGAAATTACTCC
Found at i:32214874 original size:40 final size:40
Alignment explanation
Indices: 32214784--32214968 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
32214774 TCGAATGATG
* *
32214784 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
**
32214824 TCCGAACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
* *
32214863 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
*
32214903 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* *
32214943 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32214969 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
39 35 0.28
40 83 0.66
41 8 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:32214920 original size:79 final size:81
Alignment explanation
Indices: 32214784--32214966 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
32214774 TCGAATGATG
* *
32214784 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGAACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGAACTAAGATCCGAAGGCATT
32214848 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * ***
32214863 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGAACTAAGAT-CCGAAGGCA
32214925 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
32214943 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
32214967 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGAACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:32222465 original size:40 final size:40
Alignment explanation
Indices: 32222381--32222572 Score: 205
Period size: 40 Copynumber: 4.8 Consensus size: 40
32222371 TCGAATGATG
* * *
32222381 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTAC-GAGTTACTAAT
*
32222420 ATCCGGACTAAGAT-CCGAAGGCATTTGTACGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTACGAGTTACTAAT
* * *
32222461 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAT
* *
32222500 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAT
* * *
32222539 AACCGGGCTATGTCCCGAAGGCATTTGAACGAGT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGT
32222573 AGCTATATCC
Statistics
Matches: 130, Mismatches: 16, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 35 0.27
40 86 0.66
41 9 0.07
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAT
Found at i:32222517 original size:79 final size:81
Alignment explanation
Indices: 32222381--32222563 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
32222371 TCGAATGATG
* *
32222381 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
32222445 TGTACGAGTTACTA-A
66 TGTACGAGTTACTATA
* * **
32222460 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
*
32222522 TTTGTGCGAGTTACTATA
64 TTTGTACGAGTTACTATA
* *
32222540 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
32222564 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTACGAGTTACTATA
Found at i:32222587 original size:79 final size:78
Alignment explanation
Indices: 32222382--32222598 Score: 228
Period size: 79 Copynumber: 2.7 Consensus size: 78
32222372 CGAATGATGT
* *
32222382 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAG-TCCGAAGGCATT
*
32222445 TGTACGAGTTACTAATT
62 TGTACGAGTTACTAATA
* *
32222462 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAGT-CCGAAGGCATTT
*
32222525 GTGCGAGTTACT-ATAA
63 GTACGAGTTACTAAT-A
* ** *
32222541 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTT-AAGTCCGAAGG
32222599 TACGTGATTC
Statistics
Matches: 116, Mismatches: 12, Indels: 19
0.79 0.08 0.13
Matches are distributed among these distances:
78 3 0.03
79 67 0.58
80 46 0.40
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTGTA
CGAGTTACTAATA
Found at i:32229750 original size:14 final size:14
Alignment explanation
Indices: 32229731--32229758 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
32229721 TCGAGAGAGA
32229731 TAATAATATAAATT
1 TAATAATATAAATT
32229745 TAATAATATAAATT
1 TAATAATATAAATT
32229759 AGGGATTTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
TAATAATATAAATT
Found at i:32233537 original size:47 final size:47
Alignment explanation
Indices: 32233459--32233900 Score: 758
Period size: 47 Copynumber: 9.4 Consensus size: 47
32233449 CCCTTCGGGA
* * * * * * *
32233459 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32233506 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32233553 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
32233600 CTTATTACATATATACACTCTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32233647 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32233694 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32233741 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32233788 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32233835 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32233882 CTTATCACATATATACACT
1 CTTATCACATATATACACT
32233901 GTCTTGGCTG
Statistics
Matches: 376, Mismatches: 19, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 376 1.00
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32237961 original size:40 final size:40
Alignment explanation
Indices: 32237906--32238190 Score: 384
Period size: 40 Copynumber: 7.2 Consensus size: 40
32237896 CGGATGATAA
*
32237906 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTGACTATA-TCCGGGCTAAGTCC
*
32237946 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTGACTATA-TCCGGGCTAAGTCC
* *
32237986 CGAAGGCATTTGTGCTAGTGACTA-ATTCTGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTGACTATA-TCCGGGCTAAGTCC
* *
32238026 CGAAGGCATTTCTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCC
*
32238066 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCC
*
32238106 CGAAGGCATTTGTGCGAGCT-ACTATATCTGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAG-TGACTATATCCGGGCTAAGTCC
* * *
32238146 CGAAGGCATTTGAGCGAGT-AGCTATATCC-GGTTAAATCC
1 CGAAGGCATTTGTGCGAGTGA-CTATATCCGGGCTAAGTCC
32238185 CGAAGG
1 CGAAGG
32238191 TACTTGGTTT
Statistics
Matches: 231, Mismatches: 11, Indels: 7
0.93 0.04 0.03
Matches are distributed among these distances:
39 16 0.07
40 213 0.92
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCC
Found at i:32249087 original size:21 final size:21
Alignment explanation
Indices: 32249034--32249076 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
32249024 GCCAAAATAA
32249034 AACAAGAGAAATAGAAAGCTT
1 AACAAGAGAAATAGAAAGCTT
32249055 AACAAGAGAAATAGAAAGCTT
1 AACAAGAGAAATAGAAAGCTT
32249076 A
1 A
32249077 CACTCAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.58, C:0.09, G:0.19, T:0.14
Consensus pattern (21 bp):
AACAAGAGAAATAGAAAGCTT
Found at i:32252584 original size:43 final size:43
Alignment explanation
Indices: 32252484--32252590 Score: 108
Period size: 43 Copynumber: 2.5 Consensus size: 43
32252474 GGCATTATAT
* * * *
32252484 TGTGATTACATGTAAAACCATGTCCGGGACATTGGCATCGTTA
1 TGTGATTACATGTAAAACCATGTCAGGGACAGTGGCAACGATA
*** *
32252527 T-TCGATTTTGTGTAAAACCTTGTCAGGGACAGTGGCAACGATA
1 TGT-GATTACATGTAAAACCATGTCAGGGACAGTGGCAACGATA
* *
32252570 TGTGATAACATGTAAGACCAT
1 TGTGATTACATGTAAAACCAT
32252591 ATCTGGGGTA
Statistics
Matches: 48, Mismatches: 14, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
42 1 0.02
43 46 0.96
44 1 0.02
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (43 bp):
TGTGATTACATGTAAAACCATGTCAGGGACAGTGGCAACGATA
Found at i:32259618 original size:43 final size:43
Alignment explanation
Indices: 32259553--32259702 Score: 133
Period size: 43 Copynumber: 3.5 Consensus size: 43
32259543 ATTATCAATA
* * * *
32259553 TGTGCTTACATGTAAAATCATGTCTGGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * *
32259596 TGTGATTACGTGTAAGACCATGTCTGGGAAACTGGCATCGTTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCG-TAT
* * * * * *
32259640 T-CGATTTCATGTAAGACCCTGTCTAGGACAGTGACATCG-AT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* *
32259681 ATGTGATAACATGTAAGGCCAT
1 -TGTGATTACATGTAAGACCAT
32259703 ATCCGGGATT
Statistics
Matches: 84, Mismatches: 20, Indels: 6
0.76 0.18 0.05
Matches are distributed among these distances:
41 2 0.02
42 1 0.01
43 77 0.92
44 4 0.05
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
Found at i:32260662 original size:15 final size:15
Alignment explanation
Indices: 32260630--32260658 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
32260620 ATTTTCATTG
32260630 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
32260645 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
32260659 ATTTTCGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:32267967 original size:49 final size:49
Alignment explanation
Indices: 32267892--32268085 Score: 235
Period size: 49 Copynumber: 3.9 Consensus size: 49
32267882 AGCCGAAGCT
* *
32267892 ATCTGGTACGCATAGTAGTCTGCACTTAGTACTACACATGCGACCAATA
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATA
* * * * * *
32267941 ATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGATCACAGTT
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAATA
* * *
32267992 TTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATA
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATA
* * * *
32268041 ATATGATACACGTAGTAGCCTGCACTTAGTACTACACATGTGACC
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACC
32268086 TCACAATAGT
Statistics
Matches: 119, Mismatches: 24, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
49 78 0.66
50 2 0.02
51 39 0.33
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (49 bp):
ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATA
Found at i:32268015 original size:100 final size:100
Alignment explanation
Indices: 32267896--32268083 Score: 331
Period size: 100 Copynumber: 1.9 Consensus size: 100
32267886 GAAGCTATCT
* * *
32267896 GGTACGCATAGTAGTCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATATGATACACGTAGTAGCC
32267961 TACACTTAGTACTACACACGTGATCACAGTTTTCG
66 TACACTTAGTACTACACACGTGATCACAGTTTTCG
32267996 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATATGATACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATATGATACACGTAGTAGCC
* *
32268061 TGCACTTAGTACTACACATGTGA
66 TACACTTAGTACTACACACGTGA
32268084 CCTCACAATA
Statistics
Matches: 83, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 83 1.00
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.26
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATATGATACACGTAGTAGCC
TACACTTAGTACTACACACGTGATCACAGTTTTCG
Found at i:32271538 original size:46 final size:46
Alignment explanation
Indices: 32271485--32271631 Score: 172
Period size: 46 Copynumber: 3.2 Consensus size: 46
32271475 CCCATATATG
* *
32271485 GTCTTACACTGGCTATCATCTCGAGGCCGATGCATGTCACAGACAT
1 GTCTTACACTGGCTATCATCTCGAGGTCGATGCATGTCCCAGACAT
* *
32271531 GTCTTACACTGGCT-TACGTCTCGAGGTCGATGCATGTCCCGGACAT
1 GTCTTACACTGGCTAT-CATCTCGAGGTCGATGCATGTCCCAGACAT
* * ** *
32271577 GTCTTACACTAGC-ACTCATCTTGATTTTGATGCCATGTCCCAGACAT
1 GTCTTACACTGGCTA-TCATCTCGAGGTCGATG-CATGTCCCAGACAT
32271624 GTCTTACA
1 GTCTTACA
32271632 TAATGTAGCC
Statistics
Matches: 86, Mismatches: 11, Indels: 7
0.83 0.11 0.07
Matches are distributed among these distances:
45 1 0.01
46 63 0.73
47 22 0.26
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (46 bp):
GTCTTACACTGGCTATCATCTCGAGGTCGATGCATGTCCCAGACAT
Found at i:32281645 original size:18 final size:17
Alignment explanation
Indices: 32281615--32281648 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
32281605 CATCAATCGT
*
32281615 ATAACAATCACAGTCAC
1 ATAACAATAACAGTCAC
32281632 ATAATCAATAACAGTCA
1 ATAA-CAATAACAGTCA
32281649 GTCTTCAGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.50, C:0.24, G:0.06, T:0.21
Consensus pattern (17 bp):
ATAACAATAACAGTCAC
Found at i:32284546 original size:21 final size:21
Alignment explanation
Indices: 32284505--32284547 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
32284495 TCAATTCAAA
32284505 TAATAATTTAAATAATATTTT
1 TAATAATTTAAATAATATTTT
*
32284526 TAATTATTCTAAAT-AT-TTTT
1 TAATAATT-TAAATAATATTTT
32284546 TA
1 TA
32284548 CTATCTCAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 6 0.30
21 9 0.45
22 5 0.25
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (21 bp):
TAATAATTTAAATAATATTTT
Found at i:32285611 original size:10 final size:9
Alignment explanation
Indices: 32285596--32285658 Score: 54
Period size: 9 Copynumber: 6.7 Consensus size: 9
32285586 AAGATACAAT
32285596 TTTTTTATTA
1 TTTTTTA-TA
32285606 TTTTTTATAA
1 TTTTTTAT-A
* *
32285616 TTTCTAATA
1 TTTTTTATA
*
32285625 ATTTTTATA
1 TTTTTTATA
32285634 TTTTTTATA
1 TTTTTTATA
* *
32285643 CTTTTCAGTA
1 TTTTTTA-TA
32285653 TTTTTT
1 TTTTTT
32285659 CACAATTTTT
Statistics
Matches: 41, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
9 21 0.51
10 20 0.49
ACGTcount: A:0.24, C:0.05, G:0.02, T:0.70
Consensus pattern (9 bp):
TTTTTTATA
Found at i:32288416 original size:22 final size:21
Alignment explanation
Indices: 32288391--32288439 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 21
32288381 GGTAATATGT
*
32288391 TATAGAAT-ATATGAAAATATTA
1 TATA-AATAATATAAAAAT-TTA
32288413 TATAAATAATATAAAAATTTA
1 TATAAATAATATAAAAATTTA
32288434 TA-AAAT
1 TATAAAT
32288440 TTATTTAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 4 0.16
21 8 0.32
22 13 0.52
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (21 bp):
TATAAATAATATAAAAATTTA
Found at i:32288450 original size:22 final size:21
Alignment explanation
Indices: 32288424--32288470 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 21
32288414 ATAAATAATA
*
32288424 TAAAAATTTATAAAAT-TTATT
1 TAAAAAGTTATAAAATCTTA-T
32288445 TAAAAAGTTATAAAATCTTAT
1 TAAAAAGTTATAAAATCTTAT
32288466 TAAAA
1 TAAAA
32288471 GTATCAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 21 0.88
22 3 0.12
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (21 bp):
TAAAAAGTTATAAAATCTTAT
Found at i:32288937 original size:31 final size:30
Alignment explanation
Indices: 32288900--32288980 Score: 108
Period size: 31 Copynumber: 2.7 Consensus size: 30
32288890 ATATAATCTC
* **
32288900 TAAAAATCAATTAAGCCCTTTTAAAATAAT
1 TAAAAATTAATTAAGCCCTCGTAAAATAAT
* *
32288930 TAAAAAATTAATTGAGCTCTCGTAAAATAAT
1 T-AAAAATTAATTAAGCCCTCGTAAAATAAT
32288961 TAAAAATTAATTAAGCCCTC
1 TAAAAATTAATTAAGCCCTC
32288981 CATTTTAGTA
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
30 18 0.42
31 25 0.58
ACGTcount: A:0.48, C:0.14, G:0.06, T:0.32
Consensus pattern (30 bp):
TAAAAATTAATTAAGCCCTCGTAAAATAAT
Found at i:32292502 original size:42 final size:42
Alignment explanation
Indices: 32292400--32292558 Score: 135
Period size: 43 Copynumber: 3.7 Consensus size: 42
32292390 ATTTGTGACA
* * *
32292400 TCGTGTAAGACCGTGTCTGGGACA-CAAGCCTCG-ATTGAGATT
1 TCGTGTAAGACCATGTCTGGGACATC-GGCATCGTATTGA-ATT
*
32292442 TACGTATAAGACCATGTCTGGGACATCGGCATCGTATCT-AATT
1 T-CGTGTAAGACCATGTCTGGGACATCGGCATCGTAT-TGAATT
* * * **
32292485 TCGTGTAAGACCTTGTCTAGGATAGAGGCATCGATATTGAATT
1 TCGTGTAAGACCATGTCTGGGACATCGGCATCG-TATTGAATT
* * **
32292528 ACATGTAAGACCATGTCTGGGATGTCGGCAT
1 TCGTGTAAGACCATGTCTGGGACATCGGCAT
32292559 TGTACTTAAT
Statistics
Matches: 94, Mismatches: 17, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
42 28 0.30
43 61 0.65
44 4 0.04
45 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (42 bp):
TCGTGTAAGACCATGTCTGGGACATCGGCATCGTATTGAATT
Found at i:32297138 original size:6 final size:6
Alignment explanation
Indices: 32297127--32297151 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
32297117 ACTCAGTGTA
32297127 ATTCTG ATTCTG ATTCTG ATTCTG A
1 ATTCTG ATTCTG ATTCTG ATTCTG A
32297152 ATAGATGATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.20, C:0.16, G:0.16, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:32302450 original size:40 final size:40
Alignment explanation
Indices: 32302401--32302504 Score: 165
Period size: 40 Copynumber: 2.6 Consensus size: 40
32302391 ATCTAAAATG
*
32302401 TATCAAATGAAAAGTTTGAAAAGGATATATCCGAAA-TGGA
1 TATCAAATGAAAAGGTTGAAAAGGATATATCCGAAACT-GA
* *
32302441 TATCAAATGAAAAGGTTGAAAATGATATATCTGAAACTGA
1 TATCAAATGAAAAGGTTGAAAAGGATATATCCGAAACTGA
32302481 TATCAAATGAAAAGGTTGAAAAGG
1 TATCAAATGAAAAGGTTGAAAAGG
32302505 TTGTTACACT
Statistics
Matches: 59, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
40 58 0.98
41 1 0.02
ACGTcount: A:0.48, C:0.07, G:0.20, T:0.25
Consensus pattern (40 bp):
TATCAAATGAAAAGGTTGAAAAGGATATATCCGAAACTGA
Found at i:32306392 original size:20 final size:20
Alignment explanation
Indices: 32306369--32306409 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
32306359 CTGTTTTCCC
* *
32306369 AAATTTTCATGTTTTTTTGA
1 AAATTTTCATATTTGTTTGA
32306389 AAATTTTCATATTTGTTTGA
1 AAATTTTCATATTTGTTTGA
32306409 A
1 A
32306410 TTGATCCCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.29, C:0.05, G:0.10, T:0.56
Consensus pattern (20 bp):
AAATTTTCATATTTGTTTGA
Found at i:32310476 original size:93 final size:93
Alignment explanation
Indices: 32310363--32310534 Score: 249
Period size: 93 Copynumber: 1.8 Consensus size: 93
32310353 GCCCATAAGT
* * *
32310363 GAACTCAGACTCAACTCAACGAGCTT-GGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCAGACTCAACTCAACGAG-TTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
*
32310427 ATGAGCTCGGATGCCTAGTTACATCTCTG
65 ACGAGCTCGGATGCCTAGTTACATCTCTG
* *
32310456 GAACTC-GAACTCAACTCAACGAGTTCGGACATTTGTATCCATAAGTGAACTCGAACTCAACTCA
1 GAACTCAG-ACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
*
32310520 ACGAGTTCGGATGCC
65 ACGAGCTCGGATGCC
32310535 CAAATATCCT
Statistics
Matches: 70, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
92 3 0.04
93 67 0.96
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTG
Found at i:32310525 original size:46 final size:45
Alignment explanation
Indices: 32310355--32310530 Score: 160
Period size: 46 Copynumber: 3.8 Consensus size: 45
32310345 TGTAACCCGC
* * *
32310355 CCATAAGTGAACTC-AGACTCAACTCAACGAGCTT-GGGCGTTCGCAT
1 CCATAAGTGAACTCGA-ACTCAACTCAACGAG-TTCGGAC-TTAGTAT
* * * *
32310401 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGT-T
1 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGGA--CTTAGTAT
* *** *
32310447 ACATCTCTGGAACTCGAACTCAACTCAACGAGTTCGGACATTTGTAT
1 CCATAAGT-GAACTCGAACTCAACTCAACGAGTTCGGAC-TTAGTAT
32310494 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGGA
32310531 TGCCCAAATA
Statistics
Matches: 103, Mismatches: 20, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
45 2 0.02
46 67 0.65
47 33 0.32
48 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (45 bp):
CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGGACTTAGTAT
Found at i:32310549 original size:46 final size:46
Alignment explanation
Indices: 32310406--32310549 Score: 134
Period size: 46 Copynumber: 3.1 Consensus size: 46
32310396 CGCATCCATA
* * * *
32310406 AGTGAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGAACTCAACTCAACGAGTTCGGATGCCTA--TATATC-CT
* * *
32310455 -G-GAACTCGAACTCAACTCAACGAGTTCGGA--CATTTGTATCCAT
1 AGTGAACTCGAACTCAACTCAACGAGTTCGGATGCCTATATATCC-T
* *
32310498 AAGTGAACTCGAACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGAACTCAACTCAACGAGTTCGGATGCCTATATATCCT
32310545 AGTGA
1 AGTGA
32310550 CATGTCACTT
Statistics
Matches: 77, Mismatches: 12, Indels: 15
0.74 0.12 0.14
Matches are distributed among these distances:
42 1 0.01
43 5 0.06
45 3 0.04
46 34 0.44
47 27 0.35
48 7 0.09
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (46 bp):
AGTGAACTCGAACTCAACTCAACGAGTTCGGATGCCTATATATCCT
Found at i:32315934 original size:93 final size:93
Alignment explanation
Indices: 32315821--32315992 Score: 247
Period size: 93 Copynumber: 1.8 Consensus size: 93
32315811 GCCCATAAGT
* * *
32315821 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAAATCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAAATCGAACTCAACTCAA
*
32315886 TGAGCTCGGATGCCTAGTTACATCTCTG
66 CGAGCTCGGATGCCTAGTTACATCTCTG
* * *
32315914 GAACTC-GAACTCAACTCAACGAGTTCGGACATTCGTATCCATAAGTGAACTCGAACTCAACTCA
1 GAACTCAG-ACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAAATCGAACTCAACTCA
* *
32315978 ACGAGTTTGGATGCC
65 ACGAGCTCGGATGCC
32315993 CAAATATCCT
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
92 1 0.01
93 68 0.99
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAAATCGAACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTG
Found at i:32315984 original size:46 final size:45
Alignment explanation
Indices: 32315813--32315982 Score: 164
Period size: 46 Copynumber: 3.7 Consensus size: 45
32315803 TGTAACCCGC
* *
32315813 CCATAAGTGAACTC-AGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGA-ACTCAACTCAACGAGCTC-GGCATTCGTAT
* * * * *
32315859 CCATAAGTGAAATCGGACTCAACTCAATGAGCTCGG-ATGCCTAGTT
1 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGCATTCGTA--T
* *** *
32315905 ACATCTCTGGAACTCGAACTCAACTCAACGAGTTCGGACATTCGTAT
1 CCATAAGT-GAACTCGAACTCAACTCAACGAGCTCGG-CATTCGTAT
32315952 CCATAAGTGAACTCGAACTCAACTCAACGAG
1 CCATAAGTGAACTCGAACTCAACTCAACGAG
32315983 TTTGGATGCC
Statistics
Matches: 97, Mismatches: 21, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
44 3 0.03
45 2 0.02
46 58 0.60
47 29 0.30
49 5 0.05
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGCATTCGTAT
Found at i:32327038 original size:26 final size:25
Alignment explanation
Indices: 32327001--32327058 Score: 80
Period size: 26 Copynumber: 2.3 Consensus size: 25
32326991 TTACTTGAGT
*
32327001 AAAATTTTGACAATTTTATCCCAAAG
1 AAAATTTAGACAATTTTA-CCCAAAG
* *
32327027 AAAATTTAGACAATTTTACCCTAAT
1 AAAATTTAGACAATTTTACCCAAAG
32327052 AAAATTT
1 AAAATTT
32327059 CGAGAAAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
25 12 0.41
26 17 0.59
ACGTcount: A:0.45, C:0.14, G:0.05, T:0.36
Consensus pattern (25 bp):
AAAATTTAGACAATTTTACCCAAAG
Found at i:32330361 original size:46 final size:46
Alignment explanation
Indices: 32330294--32330515 Score: 288
Period size: 46 Copynumber: 4.8 Consensus size: 46
32330284 TGTAACCCGC
* * *
32330294 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
32330340 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC--AGATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--T
* *** *
32330386 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
32330433 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
32330479 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
32330516 TGCCCAAACA
Statistics
Matches: 153, Mismatches: 16, Indels: 14
0.84 0.09 0.08
Matches are distributed among these distances:
43 1 0.01
44 3 0.02
46 113 0.74
47 30 0.20
49 5 0.03
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:32337951 original size:54 final size:54
Alignment explanation
Indices: 32337910--32338314 Score: 514
Period size: 54 Copynumber: 7.5 Consensus size: 54
32337900 AAAGTACTCC
32337910 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCT
* * *
32337964 CGATTTACAGAATTATCGTTTTACCCTTAGTTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCT
* *
32338018 CGATTTACAGAATTACCGTTTTACCCTCGATTTGTA-A-AATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTC-AGTT-TACAGAATTACCGTTTTACCCT
* * * * *
32338072 TGATTTACAGAATTACTAG-TTTACCCTCAGTTTACAAAATTATCGTTTTACCTT
1 CGATTTACAGAATTAC-CGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCT
*
32338126 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCT
* ** * * **
32338180 TGATTTGTAAAATTACCGTTTTACCCTCGATTTGTA-A-AATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTC-AGTT-TACAGAATTACCGTTTTACCCT
** * * * *
32338234 TAATTTACAGAATTACTGGTTTACCCTCAGTTTACAAAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCT
32338288 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
32338315 TGATTGTGAA
Statistics
Matches: 303, Mismatches: 38, Indels: 20
0.84 0.11 0.06
Matches are distributed among these distances:
52 4 0.01
53 9 0.03
54 277 0.91
55 9 0.03
56 4 0.01
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.41
Consensus pattern (54 bp):
CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCT
Found at i:32338001 original size:81 final size:80
Alignment explanation
Indices: 32337913--32338315 Score: 526
Period size: 81 Copynumber: 5.0 Consensus size: 80
32337903 GTACTCCCGA
* *
32337913 TTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCTCGATTTACAGAATT
1 TTTACAGAATTACTGTTTTACCCTCAGTTTACAAAATTACCGTTTTACCCTCGATTTACAGAATT
32337978 ATCGTTTTACCCTTAG
66 A-CGTTTTACCCTTAG
* ** *
32337994 TTTACAGAATTACTGTTTTACCCTC-GATTTACAGAATTACCGTTTTACCCTCGATTTGTAAAAT
1 TTTACAGAATTACTGTTTTACCCTCAG-TTTACAAAATTACCGTTTTACCCTCGATTTACAGAAT
32338058 TACTGTTTTACCCTT-G
65 TAC-GTTTTACCCTTAG
* *
32338074 ATTTACAGAATTACTAG-TTTACCCTCAGTTTACAAAATTATCGTTTTACCTTCGATTTACAGAA
1 -TTTACAGAATTACT-GTTTTACCCTCAGTTTACAAAATTACCGTTTTACCCTCGATTTACAGAA
*
32338138 TTACCGTTTTACCCTCAG
64 TTA-CGTTTTACCCTTAG
* ** ** *
32338156 TTTACAGAATTACTGTTTTACCCT-TGATTTGTAAAATTACCGTTTTACCCTCGATTTGTAAAAT
1 TTTACAGAATTACTGTTTTACCCTCAG-TTTACAAAATTACCGTTTTACCCTCGATTTACAGAAT
* *
32338220 TACTATTTTACCCTTAA
65 TAC-GTTTTACCCTTAG
* *
32338237 TTTACAGAATTACTGGTTTACCCTCAGTTTACAAAATTATCGTTTTACCCTCGATTTACAGAATT
1 TTTACAGAATTACTGTTTTACCCTCAGTTTACAAAATTACCGTTTTACCCTCGATTTACAGAATT
32338302 ACCGTTTTACCCTT
66 A-CGTTTTACCCTT
32338316 GATTGTGAAA
Statistics
Matches: 279, Mismatches: 31, Indels: 24
0.84 0.09 0.07
Matches are distributed among these distances:
80 6 0.02
81 267 0.96
82 6 0.02
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.41
Consensus pattern (80 bp):
TTTACAGAATTACTGTTTTACCCTCAGTTTACAAAATTACCGTTTTACCCTCGATTTACAGAATT
ACGTTTTACCCTTAG
Found at i:32338319 original size:27 final size:27
Alignment explanation
Indices: 32337911--32338319 Score: 418
Period size: 27 Copynumber: 15.1 Consensus size: 27
32337901 AAGTACTCCC
32337911 GATTTACAGAATTACCGTTTTACCC-T
1 GATTTACAGAATTACCGTTTTACCCTT
* *
32337937 CAGTTTACAGAATTACCGTTTTACCCTC
1 GA-TTTACAGAATTACCGTTTTACCCTT
*
32337965 GATTTACAGAATTATCGTTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTT
* *
32337992 -AGTTTACAGAATTACTGTTTTACCCTC
1 GA-TTTACAGAATTACCGTTTTACCCTT
*
32338019 GATTTACAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTT
** * *
32338046 GATTTGTAAAATTACTGTTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTT
*
32338073 GATTTACAGAATTACTAG-TTTACCC-T
1 GATTTACAGAATTAC-CGTTTTACCCTT
* * *
32338099 CAGTTTACAAAATTATCGTTTTA-CCTT
1 GA-TTTACAGAATTACCGTTTTACCCTT
32338126 CGATTTACAGAATTACCGTTTTACCC-T
1 -GATTTACAGAATTACCGTTTTACCCTT
* *
32338153 CAGTTTACAGAATTACTGTTTTACCCTT
1 GA-TTTACAGAATTACCGTTTTACCCTT
** * *
32338181 GATTTGTAAAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTT
** * **
32338208 GATTTGTAAAATTACTATTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTT
* * *
32338235 AATTTACAGAATTACTGGTTTACCC-T
1 GATTTACAGAATTACCGTTTTACCCTT
* * * *
32338261 CAGTTTACAAAATTATCGTTTTACCCTC
1 GA-TTTACAGAATTACCGTTTTACCCTT
32338289 GATTTACAGAATTACCGTTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTT
32338316 GATT
1 GATT
32338320 GTGAAATTAC
Statistics
Matches: 317, Mismatches: 52, Indels: 27
0.80 0.13 0.07
Matches are distributed among these distances:
26 10 0.03
27 298 0.94
28 9 0.03
ACGTcount: A:0.27, C:0.21, G:0.11, T:0.41
Consensus pattern (27 bp):
GATTTACAGAATTACCGTTTTACCCTT
Found at i:32338354 original size:27 final size:27
Alignment explanation
Indices: 32338324--32338519 Score: 248
Period size: 27 Copynumber: 7.3 Consensus size: 27
32338314 TTGATTGTGA
*
32338324 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
32338351 AATTTCCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
32338378 AATTACTGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
32338405 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
32338432 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
32338459 AAATACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
32338486 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
32338513 AATTACC
1 AATTACC
32338520 ATTTTGCCCC
Statistics
Matches: 144, Mismatches: 25, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 144 1.00
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:32338392 original size:54 final size:54
Alignment explanation
Indices: 32338324--32338520 Score: 279
Period size: 54 Copynumber: 3.6 Consensus size: 54
32338314 TTGATTGTGA
* * * *
32338324 AATTACTGAAATACCCCTGTAGGGTAGAATTTCCGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAG
* *
32338378 AATTACTGAAATACCCTTATAGGATAGAATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAG
*
32338432 AATTA-TCGAAATACCCTTGTAGGGTAGAAATACCAAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAG
* * * *
32338486 AATTACCGAGATACCCTTGTGGGGTAAAATTACCA
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCA
32338521 TTTTGCCCCT
Statistics
Matches: 127, Mismatches: 14, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
53 1 0.01
54 126 0.99
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.25
Consensus pattern (54 bp):
AATTACTGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAG
Found at i:32338756 original size:27 final size:26
Alignment explanation
Indices: 32338718--32338797 Score: 97
Period size: 27 Copynumber: 3.0 Consensus size: 26
32338708 CGGAGGAAGC
32338718 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
*
32338745 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * * *
32338771 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
32338798 ATTGACCGAT
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 9 0.19
27 39 0.81
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:32338920 original size:22 final size:22
Alignment explanation
Indices: 32338895--32338946 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
32338885 TTAATAGTTC
32338895 TGTGCCAACCTAAATATGGCTT
1 TGTGCCAACCTAAATATGGCTT
* * * *
32338917 TGTGCCATCTTGACTATGGCTT
1 TGTGCCAACCTAAATATGGCTT
*
32338939 CGTGCCAA
1 TGTGCCAA
32338947 ACGTATTTAC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (22 bp):
TGTGCCAACCTAAATATGGCTT
Found at i:32339133 original size:27 final size:27
Alignment explanation
Indices: 32339111--32339184 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 27
32339101 TAGGTGGGTT
*
32339111 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
* *
32339138 TGCCACAATATCTGTATCTGGTGACTG
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
32339165 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
32339185 CAGCCATGCT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
26 5 0.12
27 35 0.85
28 1 0.02
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:32339310 original size:6 final size:6
Alignment explanation
Indices: 32339301--32339402 Score: 86
Period size: 6 Copynumber: 16.8 Consensus size: 6
32339291 TTACATTCAC
* * *
32339301 ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTA ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
32339350 -TTACTA ATAT-TG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTA
1 ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
32339398 ATTCT
1 ATTCT
32339403 CATTTTGGTT
Statistics
Matches: 80, Mismatches: 7, Indels: 18
0.76 0.07 0.17
Matches are distributed among these distances:
5 6 0.08
6 67 0.84
7 5 0.06
8 2 0.03
ACGTcount: A:0.22, C:0.18, G:0.12, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:32339366 original size:30 final size:30
Alignment explanation
Indices: 32339301--32339402 Score: 143
Period size: 30 Copynumber: 3.4 Consensus size: 30
32339291 TTACATTCAC
* *
32339301 ATTCTGATTCTGATTCTGTCACCTAATTCTA
1 ATTCTGATTCTGATTCTGTTA-CTAATTCTG
32339332 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACTAAT-TCTG
*
32339362 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
*
32339392 ATTCTAATTCT
1 ATTCTGATTCT
32339403 CATTTTGGTT
Statistics
Matches: 65, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
29 1 0.02
30 43 0.66
31 21 0.32
ACGTcount: A:0.22, C:0.18, G:0.12, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:32348113 original size:3 final size:3
Alignment explanation
Indices: 32348105--32348174 Score: 140
Period size: 3 Copynumber: 23.3 Consensus size: 3
32348095 TAGGTTCATA
32348105 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC
1 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC
32348153 TAC TAC TAC TAC TAC TAC TAC T
1 TAC TAC TAC TAC TAC TAC TAC T
32348175 GTGTCATGAA
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 67 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.34
Consensus pattern (3 bp):
TAC
Found at i:32350838 original size:15 final size:16
Alignment explanation
Indices: 32350794--32350841 Score: 62
Period size: 16 Copynumber: 3.0 Consensus size: 16
32350784 TTTGACTATC
*
32350794 AAAAATATTAAATTATT
1 AAAAATATT-AATTTTT
32350811 AAAAATATTAATTTTT
1 AAAAATATTAATTTTT
*
32350827 AATAAT-TTAATTTTT
1 AAAAATATTAATTTTT
32350842 TTATGTATGT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 9 0.31
16 11 0.38
17 9 0.31
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
AAAAATATTAATTTTT
Found at i:32351202 original size:16 final size:16
Alignment explanation
Indices: 32351161--32351205 Score: 58
Period size: 15 Copynumber: 2.9 Consensus size: 16
32351151 AATTTTATAA
32351161 AGTACTTAA-TTTTTC
1 AGTACTTAATTTTTTC
**
32351176 AACACTT-ATTTTTTC
1 AGTACTTAATTTTTTC
32351191 AGTACTTAATTTTTT
1 AGTACTTAATTTTTT
32351206 TTAGTTTATC
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
14 1 0.04
15 16 0.67
16 7 0.29
ACGTcount: A:0.27, C:0.13, G:0.04, T:0.56
Consensus pattern (16 bp):
AGTACTTAATTTTTTC
Found at i:32358436 original size:42 final size:42
Alignment explanation
Indices: 32358377--32358486 Score: 168
Period size: 42 Copynumber: 2.6 Consensus size: 42
32358367 AGGGTTACTA
*
32358377 AGACTACGTGTAAGACCATATCT-GGGATATGGAATCGATATG
1 AGACTTCGTGTAAGACCATATCTAGGG-TATGGAATCGATATG
* *
32358419 AGACTTCTTGTAAGACCATATCTAGGGTATGGCATCGATATG
1 AGACTTCGTGTAAGACCATATCTAGGGTATGGAATCGATATG
*
32358461 AGACTTCGTGTAAGACCATAGCTAGG
1 AGACTTCGTGTAAGACCATATCTAGG
32358487 CTATTAGCAT
Statistics
Matches: 62, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
42 59 0.95
43 3 0.05
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.27
Consensus pattern (42 bp):
AGACTTCGTGTAAGACCATATCTAGGGTATGGAATCGATATG
Found at i:32360975 original size:16 final size:16
Alignment explanation
Indices: 32360956--32360986 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32360946 CTTCTTCACT
32360956 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
32360972 TACTTACTTACTTAA
1 TACTCACTTACTTAA
32360987 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:32360992 original size:20 final size:20
Alignment explanation
Indices: 32360953--32360992 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
32360943 AAACTTCTTC
* *
32360953 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
32360973 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
32360993 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:32361369 original size:55 final size:53
Alignment explanation
Indices: 32361236--32361438 Score: 187
Period size: 55 Copynumber: 3.8 Consensus size: 53
32361226 TTGAAACATT
* * *
32361236 ACCATTGCCATGTCTTGACATGGTCTTATATGGTATCCTTGCCTTATGAACTC
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTC
* * *
32361289 ACCAATGCCATGCCTTAGA-TTGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTT
1 ACCAATGCCATGTCTT-GACATGGTCTTACATGGGATCC-TTGCCTTAT-G-AACTC
* *** *
32361344 ATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAAACTT
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG--AACTC
* * * *
32361398 ACCAATTGACATGCCTTGGCATGGTCTTACATGGTATCCTT
1 ACCAA-TGCCATGTCTTGACATGGTCTTACATGGGATCCTT
32361439 AAACCCTAAT
Statistics
Matches: 123, Mismatches: 19, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
52 2 0.02
53 37 0.30
54 14 0.11
55 68 0.55
56 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (53 bp):
ACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTC
Found at i:32378145 original size:29 final size:27
Alignment explanation
Indices: 32378127--32378196 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
32378117 ATATTAAGTC
32378127 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
32378154 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
32378182 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
32378197 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:32378190 original size:28 final size:28
Alignment explanation
Indices: 32378127--32378224 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
32378117 ATATTAAGTC
*
32378127 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
32378154 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
32378182 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
32378211 CGCACACTTAGTGC
1 CGCACACTTAGTGC
32378225 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:32383083 original size:23 final size:23
Alignment explanation
Indices: 32383044--32383092 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
32383034 TCAAGATGGG
* *
32383044 AAATAGGAAAGAGAAAGAATAGA
1 AAATAGGAAAGAAAAAGAAGAGA
*
32383067 AAAT-GGAAAGACAAAAGGAGAGA
1 AAATAGGAAAGA-AAAAGAAGAGA
32383090 AAA
1 AAA
32383093 GAATAGATGA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 7 0.32
23 15 0.68
ACGTcount: A:0.65, C:0.02, G:0.27, T:0.06
Consensus pattern (23 bp):
AAATAGGAAAGAAAAAGAAGAGA
Found at i:32388235 original size:25 final size:24
Alignment explanation
Indices: 32388167--32388290 Score: 115
Period size: 25 Copynumber: 5.0 Consensus size: 24
32388157 AAATAGAACA
* *
32388167 CCACAAAGGTTTTACAGAGAGTTCT
1 CCACAAAGGCTTT-CAGAGAATTCT
* * *
32388192 CCACAAAGGCCTTACAGAGTATTCG
1 CCACAAAGG-CTTTCAGAGAATTCT
*
32388217 CCACAAAGGCTTTCTAGAGAATTTT
1 CCACAAAGGCTTTC-AGAGAATTCT
*
32388242 CC-CTAAAGGCTTTCAAGAGAATTCA
1 CCAC-AAAGGCTTTC-AGAGAATTCT
*
32388267 CCACAAAGGCTTTCCAGATAATTC
1 CCACAAAGGCTTT-CAGAGAATTC
32388291 GTGTTTACTG
Statistics
Matches: 81, Mismatches: 13, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
24 5 0.06
25 72 0.89
26 4 0.05
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (24 bp):
CCACAAAGGCTTTCAGAGAATTCT
Found at i:32392780 original size:13 final size:13
Alignment explanation
Indices: 32392762--32392786 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32392752 ACAAACGATA
32392762 AAATTTTCACACG
1 AAATTTTCACACG
32392775 AAATTTTCACAC
1 AAATTTTCACAC
32392787 ATATTGCATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:32394433 original size:45 final size:46
Alignment explanation
Indices: 32394339--32394519 Score: 276
Period size: 46 Copynumber: 4.0 Consensus size: 46
32394329 TATATATACA
* * * *
32394339 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
32394385 CATCTCATACACGTTTCGCATTAGCCA-TCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
32394430 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
32394476 CATCTCATACACATTTCGCATTAGCCATT-GGCTTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
32394520 ATACACTTCC
Statistics
Matches: 126, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
45 57 0.45
46 69 0.55
ACGTcount: A:0.25, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:32394455 original size:91 final size:91
Alignment explanation
Indices: 32394339--32394519 Score: 281
Period size: 91 Copynumber: 2.0 Consensus size: 91
32394329 TATATATACA
* * *
32394339 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATCCATCTCATACACGTTTCGC
1 CATCTCATACACATCTCACATTAGCCATTCGGCTTTACCACATATCCATCTCATACACATTTCGC
*
32394404 ATTAGCCATCGGCTTTACCTCATATC
66 ATTAGCCATCGGCTTTACCACATATC
* * * *
32394430 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATCCATCTCATACACATTTCGC
1 CATCTCATACACATCTCACATTAGCCATTCGGCTTTACCACATATCCATCTCATACACATTTCGC
*
32394495 ATTAGCCATTGGCTTTACCACATAT
66 ATTAGCCATCGGCTTTACCACATAT
32394520 ATACACTTCC
Statistics
Matches: 81, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
91 81 1.00
ACGTcount: A:0.25, C:0.31, G:0.09, T:0.34
Consensus pattern (91 bp):
CATCTCATACACATCTCACATTAGCCATTCGGCTTTACCACATATCCATCTCATACACATTTCGC
ATTAGCCATCGGCTTTACCACATATC
Found at i:32394567 original size:47 final size:47
Alignment explanation
Indices: 32394494--32394720 Score: 262
Period size: 47 Copynumber: 5.1 Consensus size: 47
32394484 ACACATTTCG
* * * * * *
32394494 CATTAGCCATT-GGCTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
*
32394540 CATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
32394587 CATTGGCCATTCGGCCTTATCTCATATATGCATATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
32394634 CATCGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
32394681 CATT-G-CATT---CCTTAT--CATATAT-CA--TTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
32394718 CAT
1 CAT
32394721 AAAATCCTAA
Statistics
Matches: 163, Mismatches: 16, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
37 16 0.10
39 2 0.01
40 6 0.04
42 6 0.04
45 4 0.02
46 12 0.07
47 117 0.72
ACGTcount: A:0.27, C:0.29, G:0.09, T:0.35
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:32398598 original size:40 final size:40
Alignment explanation
Indices: 32398539--32398829 Score: 502
Period size: 40 Copynumber: 7.4 Consensus size: 40
32398529 CCTTCGAGGT
32398539 TTAGCCC-GATATATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
32398578 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
32398618 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
32398658 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGG-AC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
*
32398697 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCAGG-AC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTC-GGAAC
*
32398737 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
* *
32398777 TTAGCCTGGATATATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
32398817 TTA-CCC-GATATAT
1 TTAGCCCGGATATAT
32398830 ATAACTCTCA
Statistics
Matches: 245, Mismatches: 4, Indels: 7
0.96 0.02 0.03
Matches are distributed among these distances:
38 7 0.03
39 47 0.19
40 191 0.78
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
Found at i:32398714 original size:119 final size:119
Alignment explanation
Indices: 32398539--32398823 Score: 495
Period size: 119 Copynumber: 2.4 Consensus size: 119
32398529 CCTTCGAGGT
*
32398539 TTAGCCC-GATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACG
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGG-ACTTAGCCCGGATACATCACTAGCACG
32398603 AATGCTCTTC-GGAACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
65 AATGCTCTTCAGG-ACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
32398658 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGACTTAGCCCGGATACATCACTAGCACGA
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGACTTAGCCCGGATACATCACTAGCACGA
*
32398723 ATGCTCTTCAGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
66 ATGCTCTTCAGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
*
32398777 TTAGCCTGGATATATCACTAGCACGAATGCTCTTCGGGACTTA-CCCG
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTC-GGACTTAGCCCG
32398824 ATATATATAA
Statistics
Matches: 160, Mismatches: 3, Indels: 6
0.95 0.02 0.04
Matches are distributed among these distances:
119 122 0.76
120 38 0.24
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (119 bp):
TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGACTTAGCCCGGATACATCACTAGCACGA
ATGCTCTTCAGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
Found at i:32400380 original size:46 final size:46
Alignment explanation
Indices: 32400312--32400494 Score: 258
Period size: 46 Copynumber: 4.0 Consensus size: 46
32400302 TATATATACA
* * *
32400312 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
* * *
32400358 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
* * *
32400404 CATCTCATACACGTTTCACATTAGCCATTCGGCTTTAGCTCATATC
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
* * *
32400450 CATCTCATATACATTTCGCATTAGCCATTCGACTTTACCACATAT
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATAT
32400495 ATACACTTCC
Statistics
Matches: 123, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 123 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
Found at i:32400539 original size:47 final size:47
Alignment explanation
Indices: 32400468--32400752 Score: 419
Period size: 47 Copynumber: 6.1 Consensus size: 47
32400458 ATACATTTCG
* * * * * * *
32400468 CATTAGCCATTCGACTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
*
32400515 CATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
32400562 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
32400609 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
32400656 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * * **
32400703 CATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
32400750 CAT
1 CAT
32400753 AAAATCCTAA
Statistics
Matches: 221, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
46 1 0.00
47 220 1.00
ACGTcount: A:0.26, C:0.29, G:0.10, T:0.34
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:32400632 original size:22 final size:22
Alignment explanation
Indices: 32400558--32400676 Score: 59
Period size: 22 Copynumber: 5.1 Consensus size: 22
32400548 GTTCACATTC
32400558 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
32400580 ATCACACATAT-G-CATGTTC-ACATT
1 AT--CACAT-TGGCCA--TTCGGCCTT
32400604 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * *
32400627 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
32400651 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
32400674 ATC
1 ATC
32400677 TCATATATGC
Statistics
Matches: 71, Mismatches: 10, Indels: 32
0.63 0.09 0.28
Matches are distributed among these distances:
22 19 0.27
23 18 0.25
24 18 0.25
25 16 0.23
ACGTcount: A:0.24, C:0.29, G:0.13, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:32409230 original size:43 final size:42
Alignment explanation
Indices: 32409182--32409304 Score: 133
Period size: 42 Copynumber: 2.9 Consensus size: 42
32409172 TCCCAGACGA
* *
32409182 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAAACA-
1 GGTCTTACACGTAATCAAA-ATCGATGCCAATGTCCCAAACAT
* *
32409224 GTGTCTTACACGAAATCATACA-CGATGCCAATGTCCCAAACAT
1 G-GTCTTACACGTAATCA-AAATCGATGCCAATGTCCCAAACAT
* *
32409267 GGTCTTACACGTAGATCTCAAATCGATGCCAACGTCCC
1 GGTCTTACACGTA-ATC-AAAATCGATGCCAATGTCCC
32409305 TGATGTGGTC
Statistics
Matches: 67, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
42 31 0.46
43 21 0.31
44 15 0.22
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.24
Consensus pattern (42 bp):
GGTCTTACACGTAATCAAAATCGATGCCAATGTCCCAAACAT
Found at i:32412673 original size:47 final size:47
Alignment explanation
Indices: 32412606--32413228 Score: 1016
Period size: 47 Copynumber: 13.3 Consensus size: 47
32412596 ACAAGATATG
32412606 TATATGTGATAA-GCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
32412652 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
32412699 TATATGTGATAAGG-CTGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCT-AATGGCCAATGTGATGAATGTGAAAGTGTA
*
32412746 TATATGTGATAAAGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
32412793 TATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
32412840 TATATGAGATAAGACCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
32412887 TATATGTGATAAAGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
32412934 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
32412981 TATATGTGATAAAGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
32413028 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
32413075 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * *
32413122 TATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
32413169 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
32413216 TAAATGTGATAAG
1 TATATGTGATAAG
32413229 TCCCGAAGGG
Statistics
Matches: 533, Mismatches: 41, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
46 13 0.02
47 518 0.97
48 2 0.00
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (47 bp):
TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:32416633 original size:13 final size:12
Alignment explanation
Indices: 32416609--32416654 Score: 56
Period size: 13 Copynumber: 3.7 Consensus size: 12
32416599 TGTAAATAAG
*
32416609 AAAAATATCTTT
1 AAAAATTTCTTT
32416621 AAAAATTTCCTTT
1 AAAAATTT-CTTT
*
32416634 AATAATTTCTTT
1 AAAAATTTCTTT
32416646 AGAAAATTT
1 A-AAAATTT
32416655 TCTCTTTACA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
12 12 0.41
13 17 0.59
ACGTcount: A:0.43, C:0.09, G:0.02, T:0.46
Consensus pattern (12 bp):
AAAAATTTCTTT
Found at i:32418991 original size:14 final size:14
Alignment explanation
Indices: 32418972--32419000 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
32418962 TAAGTTACTT
32418972 AATCTTTGATGCAA
1 AATCTTTGATGCAA
32418986 AATCTTTGATGCAA
1 AATCTTTGATGCAA
32419000 A
1 A
32419001 CATATTTGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (14 bp):
AATCTTTGATGCAA
Found at i:32422218 original size:57 final size:56
Alignment explanation
Indices: 32422084--32422219 Score: 139
Period size: 57 Copynumber: 2.4 Consensus size: 56
32422074 TATACAATAA
* * * * *
32422084 GATTACCAGTCCAGGCTAAATCCTTTTTATGACATATGCTCTAAGGAGCTTGATCTG
1 GATTACCAGTCCAGGCTAAAT-CTATCTATAACATATGCTCGAAGGAGCTTGATCAG
* * * * *
32422141 GATTACCCGTCCGGGATAAATCTAATCTATAACATATGCTCGGAGGA-CTTATATCAG
1 GATTACCAGTCCAGGCTAAATCT-ATCTATAACATATGCTCGAAGGAGCTT-GATCAG
*
32422198 GATTACCAATCCAGGCTAAATC
1 GATTACCAGTCCAGGCTAAATC
32422220 CTTTCTGTAA
Statistics
Matches: 63, Mismatches: 14, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
56 5 0.08
57 58 0.92
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.29
Consensus pattern (56 bp):
GATTACCAGTCCAGGCTAAATCTATCTATAACATATGCTCGAAGGAGCTTGATCAG
Found at i:32436911 original size:48 final size:49
Alignment explanation
Indices: 32436792--32436977 Score: 216
Period size: 48 Copynumber: 3.8 Consensus size: 49
32436782 AAGATGCTGG
* * * * *
32436792 TGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCGATGCTGA
1 TGCCATGTCCCAAACATGGTCTTACACTAGCTCT-ACATATCAATGCCGA
* * *
32436842 TGCCATGTTCCAAACATGGTCTTACACTAGC-CTACATGTCAAGGCCGA
1 TGCCATGTCCCAAACATGGTCTTACACTAGCTCTACATATCAATGCCGA
* * * *
32436890 TACCATGTCCCAGACATGGTCTTACACTAGCTCT-CATATAAATGTCGA
1 TGCCATGTCCCAAACATGGTCTTACACTAGCTCTACATATCAATGCCGA
* *
32436938 TGCCATGTTCCAAACATGGTCTTACACTGGCTC-ACATATC
1 TGCCATGTCCCAAACATGGTCTTACACTAGCTCTACATATC
32436978 CCTAGTATCA
Statistics
Matches: 114, Mismatches: 20, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
48 82 0.72
49 4 0.04
50 28 0.25
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.28
Consensus pattern (49 bp):
TGCCATGTCCCAAACATGGTCTTACACTAGCTCTACATATCAATGCCGA
Found at i:32439789 original size:31 final size:31
Alignment explanation
Indices: 32439556--32439788 Score: 403
Period size: 31 Copynumber: 7.5 Consensus size: 31
32439546 TTTAACGGTT
*
32439556 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
*
32439587 ACTAGGCCGAAGCCTTATCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
32439618 ACTGGGCCGAAGCCTTATCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
32439649 ACTGGGCCGAAGCCTTATCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
32439680 ACTGGGCCGAAGCCTTATCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
* *
32439711 TCTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
* *
32439742 ACTGGGCCGAATCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
*
32439773 ATTGGGCCGAAGCCTT
1 ACTGGGCCGAAGCCTT
32439789 TACTGTAAAC
Statistics
Matches: 193, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 193 1.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTATCATAAATCATATC
Found at i:32440022 original size:24 final size:25
Alignment explanation
Indices: 32439995--32440102 Score: 121
Period size: 25 Copynumber: 4.4 Consensus size: 25
32439985 CTGGAGGCCT
32439995 AGCCTCTTTT-AAT-AACTGGGGCAA
1 AGCC-CTTTTCAATAAACTGGGGCAA
*
32440019 AGCCCTTTTCAGTAAACTGGGGCAA
1 AGCCCTTTTCAATAAACTGGGGCAA
*** *
32440044 AGCCCTTTTTGGTAAACTGGGGAAA
1 AGCCCTTTTCAATAAACTGGGGCAA
** *
32440069 AGCCCTTTTCGGTAAACTGGGGCAT
1 AGCCCTTTTCAATAAACTGGGGCAA
32440094 AGCCCTTTT
1 AGCCCTTTT
32440103 AGCACTTCCT
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
23 5 0.07
24 6 0.08
25 64 0.85
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29
Consensus pattern (25 bp):
AGCCCTTTTCAATAAACTGGGGCAA
Found at i:32440036 original size:25 final size:25
Alignment explanation
Indices: 32440008--32440102 Score: 154
Period size: 25 Copynumber: 3.8 Consensus size: 25
32439998 CTCTTTTAAT
*
32440008 AACTGGGGCAAAGCCCTTTTCAGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
32440033 AACTGGGGCAAAGCCCTTTTTGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
32440058 AACTGGGGAAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
32440083 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
32440103 AGCACTTCCT
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 64 1.00
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:32440973 original size:27 final size:27
Alignment explanation
Indices: 32440911--32440988 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
32440901 GGGCATATTC
32440911 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
32440938 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
* *
32440965 GTCTTTTTACC-TAATAGGGGTATT
1 GTCATTTTACCAT-ACAGGGGTATT
32440989 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 2 0.05
27 40 0.93
28 1 0.02
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:32441059 original size:27 final size:27
Alignment explanation
Indices: 32441029--32441311 Score: 189
Period size: 27 Copynumber: 10.4 Consensus size: 27
32441019 GTAAATCTAC
*
32441029 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
*
32441056 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTT-TAGTAATTTTGT
*
32441082 AGAAAGTCAAGGGTATTTCT-GTAATTTTGT
1 --AAA-CCAAGGGTATTT-TAGTAATTTTGT
* * * **
32441112 AAATCAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTTAGTAATTTTGT
*** * **
32441139 AAATTGAGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTTAGTAATTTTGT
* * * **
32441166 AAACTAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTTAGTAATTTTGT
* * **
32441193 AAACCAGGGGTATTTTAGCAATTTTAC
1 AAACCAAGGGTATTTTAGTAATTTTGT
* * *
32441220 AGACCAA-GGTATTTTGGTAATTTTACT
1 AAACCAAGGGTATTTTAGTAATTTT-GT
* * * *
32441247 -GATCGAGGGTATTTTGGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
32441273 AAACCAAGGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
* *
32441300 AAATCGAGGGTA
1 AAACCAAGGGTA
32441312 AAACAATAAT
Statistics
Matches: 215, Mismatches: 31, Indels: 20
0.81 0.12 0.08
Matches are distributed among these distances:
26 22 0.10
27 166 0.77
28 7 0.03
29 19 0.09
30 1 0.00
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTTAGTAATTTTGT
Found at i:32441175 original size:54 final size:54
Alignment explanation
Indices: 32441009--32441311 Score: 245
Period size: 54 Copynumber: 5.6 Consensus size: 54
32440999 CACCCTACAA
* * * * * ** ** *
32441009 GGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAACCAG
* * * * ** *
32441063 TGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCT-GTAATTTTGTAAATCAG
1 GGGTATTT-TGGTAA-TTTTACAAA-TCGAGGGTATTT-TGGTAATTTTACAAACCAG
* *
32441119 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAACCAG
* * * *
32441173 GGGTATTTTGGTAATTTTACAAA-CCAGGGGTATTTTAGCAATTTTACAGACCA-
1 GGGTATTTTGGTAATTTTACAAATCGA-GGGTATTTTGGTAATTTTACAAACCAG
* ** ** *
32441226 AGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAACCAG
* **
32441280 GGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 GGGTATTTTGGTAATTTTACAAATCGAGGGTA
32441312 AAACAATAAT
Statistics
Matches: 200, Mismatches: 40, Indels: 18
0.78 0.16 0.07
Matches are distributed among these distances:
53 43 0.22
54 105 0.52
55 16 0.08
56 36 0.18
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAACCAG
Found at i:32441262 original size:80 final size:80
Alignment explanation
Indices: 32441029--32441297 Score: 258
Period size: 80 Copynumber: 3.3 Consensus size: 80
32441019 GTAAATCTAC
* * ** * * *
32441029 AAACCAAGGGTATTTCAGTAATTTTGTAAA-CCAATGGTATTTCT-ATAATTTTTAGAAAGTCAA
1 AAACCAGGGGTATTTTAGTAATTTTACAAATCCAA-GGTATTT-TGGTAA-TTTTACAAA--CGA
32441092 GGGTATTTCT-GTAATTTTGT
61 GGGTATTT-TGGTAATTTTGT
* * ** * *
32441112 AAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTTACAAACTAGGGGT
1 AAACCAGGGGTATTTTAGTAATTTTACAAATCCAAGGTATTTTGGTAATTTTACAAACGA-GGGT
**
32441177 ATTTTGGTAATTTTAC
65 ATTTTGGTAATTTTGT
* * * *
32441193 AAACCAGGGGTATTTTAGCAATTTTACAGA-CCAAGGTATTTTGGTAATTTTACTGATCGAGGGT
1 AAACCAGGGGTATTTTAGTAATTTTACAAATCCAAGGTATTTTGGTAATTTTAC-AAACGAGGGT
32441257 ATTTTGGTAATTTTGT
65 ATTTTGGTAATTTTGT
*
32441273 AAACCAAGGGTATTTTAGTAATTTT
1 AAACCAGGGGTATTTTAGTAATTTT
32441298 GTAAATCGAG
Statistics
Matches: 153, Mismatches: 28, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
80 64 0.42
81 45 0.29
82 9 0.06
83 34 0.22
84 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (80 bp):
AAACCAGGGGTATTTTAGTAATTTTACAAATCCAAGGTATTTTGGTAATTTTACAAACGAGGGTA
TTTTGGTAATTTTGT
Found at i:32441321 original size:27 final size:27
Alignment explanation
Indices: 32441289--32441419 Score: 163
Period size: 27 Copynumber: 4.9 Consensus size: 27
32441279 AGGGTATTTT
*
32441289 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
32441316 AATAATTCTGTAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
32441343 AGTAATTCTATAAATCGATGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
32441370 GGTAATTCTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
32441397 GGTAATTATGTAAATCGGGGGTA
1 AGTAATTCTGTAAATCGAGGGTA
32441420 CTTTGGTAAT
Statistics
Matches: 89, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 89 1.00
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.30
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:32441322 original size:54 final size:54
Alignment explanation
Indices: 32441264--32441419 Score: 186
Period size: 54 Copynumber: 2.9 Consensus size: 54
32441254 GGTATTTTGG
* * *** *
32441264 TAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAA
1 TAATTCTGTAAATCAAGGGTAAAATAGTAATTATGTAAATCGAGGGTAAAACAA
* * * **
32441318 TAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGATGGTAAAACGG
1 TAATTCTGTAAATCAAGGGTAAAATAGTAATTATGTAAATCGAGGGTAAAACAA
* * *
32441372 TAATTCTGTAAATCGAGGGTAAAATGGTAATTATGTAAATCGGGGGTA
1 TAATTCTGTAAATCAAGGGTAAAATAGTAATTATGTAAATCGAGGGTA
32441420 CTTTGGTAAT
Statistics
Matches: 86, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 86 1.00
ACGTcount: A:0.39, C:0.08, G:0.21, T:0.32
Consensus pattern (54 bp):
TAATTCTGTAAATCAAGGGTAAAATAGTAATTATGTAAATCGAGGGTAAAACAA
Found at i:32441335 original size:107 final size:105
Alignment explanation
Indices: 32441014--32441335 Score: 279
Period size: 107 Copynumber: 3.0 Consensus size: 105
32441004 TACAAGGGTG
* * * * ** *
32441014 TTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCTA-TAAT
1 TTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTT-TAGTAAT
* *
32441078 TTTTAGAAAGTCAAGGGTATTTCTGTAATTTTGTAAATCAGGGGTA
65 TTTT--AAA-TCAAGGGTATTTCAGTAA-TTTGTAAATCA-AGGTA
* ** * * *
32441124 TTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATT
1 TTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATT
* * * * * *
32441189 TTACAAACCAGGGGTATTTTAGCAATTT-TACAGACCAAGGTA
66 TT-TAAATCAAGGGTATTTCAGTAATTTGTA-A-ATCAAGGTA
**
32441231 TTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATT
1 TTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATT
* *** *
32441296 TTGTAAATCGAGGGTAAAACAATAATTCTGTAAATCAAGG
66 TT-TAAATCAAGGGTATTTCAGTAATT-TGTAAATCAAGG
32441336 GTAAAATAGT
Statistics
Matches: 165, Mismatches: 41, Indels: 15
0.75 0.19 0.07
Matches are distributed among these distances:
106 2 0.01
107 87 0.53
108 18 0.11
109 6 0.04
110 52 0.32
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (105 bp):
TTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATT
TTTAAATCAAGGGTATTTCAGTAATTTGTAAATCAAGGTA
Found at i:32441426 original size:27 final size:27
Alignment explanation
Indices: 32441290--32441446 Score: 143
Period size: 27 Copynumber: 5.8 Consensus size: 27
32441280 GGGTATTTTA
* **
32441290 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTATGTAAATCGAGGGTAAAATG
* * * *
32441317 ATAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTATGTAAATCGAGGGTAAAATG
* * * *
32441344 GTAATTCTATAAATCGATGGTAAAACG
1 GTAATTATGTAAATCGAGGGTAAAATG
*
32441371 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTATGTAAATCGAGGGTAAAATG
* ***
32441398 GTAATTATGTAAATCGGGGGTACTTTG
1 GTAATTATGTAAATCGAGGGTAAAATG
* * *
32441425 GTAATTTTATAAGTCGAGGGTA
1 GTAATTATGTAAATCGAGGGTA
32441447 TTTCAATAAT
Statistics
Matches: 108, Mismatches: 22, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 108 1.00
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.32
Consensus pattern (27 bp):
GTAATTATGTAAATCGAGGGTAAAATG
Found at i:32441457 original size:81 final size:81
Alignment explanation
Indices: 32441248--32441457 Score: 204
Period size: 81 Copynumber: 2.6 Consensus size: 81
32441238 AATTTTACTG
* * * * * *
32441248 ATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAA
1 ATCGAGGGTAATTTGGTAATTTTATAAATCGAGGGTATTTCAGTAATTCTGTAAATCGAGGGTAA
*
32441313 AACAATAATTCTGTAA
66 AACAATAATTATGTAA
* ** * * * *** *
32441329 ATCAAGGGTAAAATAGTAATTCTATAAATCGATGGTAAAACGGTAATTCTGTAAATCGAGGGTAA
1 ATCGAGGGTAATTTGGTAATTTTATAAATCGAGGGTATTTCAGTAATTCTGTAAATCGAGGGTAA
***
32441394 AATGGTAATTATGTAA
66 AACAATAATTATGTAA
* * * *
32441410 ATCGGGGGTACTTTGGTAATTTTATAAGTCGAGGGTATTTCAATAATT
1 ATCGAGGGTAATTTGGTAATTTTATAAATCGAGGGTATTTCAGTAATT
32441458 GGTAAACTAA
Statistics
Matches: 95, Mismatches: 34, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
81 95 1.00
ACGTcount: A:0.36, C:0.08, G:0.22, T:0.35
Consensus pattern (81 bp):
ATCGAGGGTAATTTGGTAATTTTATAAATCGAGGGTATTTCAGTAATTCTGTAAATCGAGGGTAA
AACAATAATTATGTAA
Found at i:32452436 original size:40 final size:40
Alignment explanation
Indices: 32452374--32452591 Score: 300
Period size: 40 Copynumber: 5.5 Consensus size: 40
32452364 AAACCAAGTA
* * *
32452374 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
**
32452413 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
32452453 CCTTCGAGACTTAGCCCGGATATAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
32452493 CCTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* *
32452533 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
32452573 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
32452592 TTATCATCCG
Statistics
Matches: 163, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 14 0.09
40 149 0.91
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:32457462 original size:25 final size:25
Alignment explanation
Indices: 32457432--32457488 Score: 80
Period size: 24 Copynumber: 2.3 Consensus size: 25
32457422 AAGCTTCTCC
*
32457432 TGAGCTGATAAACAATAAGCTCTAT
1 TGAGCTGAGAAACAATAAGCTCTAT
**
32457457 TGAGCTG-GAAACGGTAAGCTCTAT
1 TGAGCTGAGAAACAATAAGCTCTAT
32457481 TGAGCTGA
1 TGAGCTGA
32457489 ATAATAAGCT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 21 0.75
25 7 0.25
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.26
Consensus pattern (25 bp):
TGAGCTGAGAAACAATAAGCTCTAT
Found at i:32457499 original size:22 final size:22
Alignment explanation
Indices: 32457445--32457500 Score: 69
Period size: 24 Copynumber: 2.5 Consensus size: 22
32457435 GCTGATAAAC
32457445 AATAAGCTCTATTGAGCTGGAA
1 AATAAGCTCTATTGAGCTGGAA
*
32457467 ACGGTAAGCTCTATTGAGCT-GAA
1 A--ATAAGCTCTATTGAGCTGGAA
32457490 TAATAAGCTCT
1 -AATAAGCTCT
32457501 TTCCAGCTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
22 9 0.31
23 3 0.10
24 17 0.59
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (22 bp):
AATAAGCTCTATTGAGCTGGAA
Found at i:32457523 original size:23 final size:23
Alignment explanation
Indices: 32457447--32457523 Score: 77
Period size: 22 Copynumber: 3.3 Consensus size: 23
32457437 TGATAAACAA
* *
32457447 TAAGCTCTATTGAGCTGGAAACGG
1 TAAGCTCTATTCAGCT-GAATCGG
* **
32457471 TAAGCTCTATTGAGCTGAAT-AA
1 TAAGCTCTATTCAGCTGAATCGG
32457493 TAAGCTCT-TTCCAGCTGAATCGG
1 TAAGCTCTATT-CAGCTGAATCGG
32457516 TAAGCTCT
1 TAAGCTCT
32457524 GAAACAGTAA
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.04
22 16 0.36
23 11 0.24
24 16 0.36
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (23 bp):
TAAGCTCTATTCAGCTGAATCGG
Found at i:32458891 original size:19 final size:21
Alignment explanation
Indices: 32458853--32458893 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
32458843 TTTTTTCACA
32458853 TAGCTTCCTCAGGTTCCCATG
1 TAGCTTCCTCAGGTTCCCATG
32458874 TAGCTTCCTC-GG-TCCCATG
1 TAGCTTCCTCAGGTTCCCATG
32458893 T
1 T
32458894 TTATGCCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 8 0.40
20 2 0.10
21 10 0.50
ACGTcount: A:0.12, C:0.34, G:0.20, T:0.34
Consensus pattern (21 bp):
TAGCTTCCTCAGGTTCCCATG
Found at i:32462854 original size:19 final size:20
Alignment explanation
Indices: 32462830--32462867 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
32462820 GGTACCACCA
32462830 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
32462849 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
32462868 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:32463207 original size:93 final size:93
Alignment explanation
Indices: 32463097--32463267 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
32463087 GCCCCTAAGT
*
32463097 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
*
32463162 CGGGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
32463190 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
32463255 CGAGTTCGGATGC
66 CGAGTTCGGATGC
32463268 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:32463264 original size:46 final size:46
Alignment explanation
Indices: 32463092--32463264 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
32463082 AACCCGCCCC
* * *
32463092 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * * *
32463138 TAAATGAACTCGGACTCAACTCAACGGGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
32463186 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
32463231 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
32463265 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 59 0.56
47 28 0.26
48 2 0.02
49 2 0.02
50 5 0.05
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Done.