Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 105 of 316
Found at i:32835053 original size:29 final size:29
Alignment explanation
Indices: 32834937--32835111 Score: 266
Period size: 29 Copynumber: 6.1 Consensus size: 29
32834927 ACATACATGT
*
32834937 ATATGGCCCACTAGGCCC-AATCACATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
*
32834965 ATATGGCCCATTAGACCC-AATCACATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
*
32834993 ATATGGCCCATTAGG-CCTAATCACATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
*
32835021 ATATGGCCCATTCGGCCCAAATCACATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
*
32835050 ATATGACCCATTAGGCCCAAATCACATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
* *
32835079 ATATGGCCCATTAGGCCCAAATAATATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
32835108 ATAT
1 ATAT
32835112 TCATGCTTTC
Statistics
Matches: 135, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
27 2 0.01
28 64 0.47
29 69 0.51
ACGTcount: A:0.31, C:0.30, G:0.13, T:0.26
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATTC
Found at i:32835364 original size:16 final size:16
Alignment explanation
Indices: 32835328--32835373 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
32835318 AAGCCTTCAG
*
32835328 CTTTTCAGCATTTCTG
1 CTTTTCAGCATTTCTA
* *
32835344 TTTTTTAGCATTTCTA
1 CTTTTCAGCATTTCTA
*
32835360 CTTTTCGGCATTTC
1 CTTTTCAGCATTTC
32835374 GGGATTTACC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.13, C:0.22, G:0.11, T:0.54
Consensus pattern (16 bp):
CTTTTCAGCATTTCTA
Found at i:32841149 original size:39 final size:39
Alignment explanation
Indices: 32841046--32841307 Score: 302
Period size: 39 Copynumber: 6.6 Consensus size: 39
32841036 TTGAATGATG
*
32841046 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
32841084 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
*
32841125 TCCGGGCTAAGCCCAAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
32841164 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
32841203 TTCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* *
32841242 TCCGGGTTAAGTCCCGAAGGAATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
32841281 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
32841308 AACGAGGAGC
Statistics
Matches: 196, Mismatches: 20, Indels: 13
0.86 0.09 0.06
Matches are distributed among these distances:
39 128 0.65
40 56 0.29
41 11 0.06
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:32849165 original size:39 final size:40
Alignment explanation
Indices: 32849070--32849292 Score: 257
Period size: 39 Copynumber: 5.7 Consensus size: 40
32849060 TTGAATGATG
*
32849070 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
32849108 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
*
32849149 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
32849188 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
32849227 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
32849266 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
32849293 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 13, Indels: 17
0.84 0.07 0.09
Matches are distributed among these distances:
39 91 0.56
40 59 0.36
41 11 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:32849256 original size:79 final size:80
Alignment explanation
Indices: 32849070--32849292 Score: 285
Period size: 79 Copynumber: 2.8 Consensus size: 80
32849060 TTGAATGATG
* * * *
32849070 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTATATCCGGGCTAAGACCCGAAGGCATT
*
32849133 TGTGCGAGATACTAAT
65 TGTGCGAGATACTAAA
*
32849149 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGATACTATTTCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTATATCCGGGCTAAGACCCGAAGGCATT
*
32849211 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* * * * *
32849227 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTATATCCGGGCTAAGACCCGAAGGCATTT
32849292 G
66 G
32849293 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 12, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
78 44 0.35
79 60 0.48
80 22 0.17
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTATATCCGGGCTAAGACCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:32849314 original size:79 final size:78
Alignment explanation
Indices: 32849122--32849315 Score: 216
Period size: 79 Copynumber: 2.5 Consensus size: 78
32849112 GGACTAAGAT
** * *
32849122 CCGAAGGCATTTGTGCGAGAT-ACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTA
1 CCGAAGGCATTTGAACGAG-TGACTAAATCCGGGTTAAGCCCGAAGGCATTTGTGCGAGATACTA
**
32849186 TTTCCGGGCTAAGC
65 TAACCGGGCTAAGC
** *
32849200 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT
1 CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAG-CCCGAAGGCATTTGTGCGAGA-TACT
*
32849264 ATAACCGGGCTATGTC
64 ATAACCGGGCTAAG-C
*
32849280 CCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAA
1 CCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAA
32849316 ATTTCGAAGG
Statistics
Matches: 102, Mismatches: 9, Indels: 9
0.85 0.08 0.08
Matches are distributed among these distances:
77 1 0.01
78 35 0.34
79 41 0.40
80 25 0.25
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (78 bp):
CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGCCCGAAGGCATTTGTGCGAGATACTAT
AACCGGGCTAAGC
Found at i:32853521 original size:30 final size:30
Alignment explanation
Indices: 32853487--32853547 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
32853477 GTTGGAATTG
32853487 TGCCATGCCCAAGGAGAAGAGATAGATGAA
1 TGCCATGCCCAAGGAGAAGAGATAGATGAA
32853517 TGCCATGCCCAAGGAGAAGAGATAGATGAA
1 TGCCATGCCCAAGGAGAAGAGATAGATGAA
32853547 T
1 T
32853548 CTTCCCAAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.39, C:0.16, G:0.30, T:0.15
Consensus pattern (30 bp):
TGCCATGCCCAAGGAGAAGAGATAGATGAA
Found at i:32861316 original size:28 final size:29
Alignment explanation
Indices: 32861279--32861373 Score: 140
Period size: 28 Copynumber: 3.3 Consensus size: 29
32861269 AAGTCTACAT
* *
32861279 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
32861307 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
32861336 ACATTCATAT-GTCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
32861364 ACATTCATAT
1 ACATTCATAT
32861374 TCATGCTTTC
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
28 48 0.79
29 13 0.21
ACGTcount: A:0.31, C:0.31, G:0.13, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:32861612 original size:16 final size:16
Alignment explanation
Indices: 32861591--32861621 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
32861581 AACCTTCAGC
32861591 TTTTCGGCATTTCGAT
1 TTTTCGGCATTTCGAT
32861607 TTTTCGGCATTTCGA
1 TTTTCGGCATTTCGA
32861622 GATTTGCTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.13, C:0.19, G:0.19, T:0.48
Consensus pattern (16 bp):
TTTTCGGCATTTCGAT
Found at i:32873769 original size:30 final size:30
Alignment explanation
Indices: 32873735--32873793 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
32873725 CTAGCAATGA
32873735 CTTAGTTTTCGAAAGCACTTTCATGTGACT
1 CTTAGTTTTCGAAAGCACTTTCATGTGACT
32873765 CTTAGTTTTCGAAAGCACTTTCATGTGAC
1 CTTAGTTTTCGAAAGCACTTTCATGTGAC
32873794 ATCGCCAGAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.24, C:0.20, G:0.17, T:0.39
Consensus pattern (30 bp):
CTTAGTTTTCGAAAGCACTTTCATGTGACT
Found at i:32873935 original size:10 final size:10
Alignment explanation
Indices: 32873912--32873950 Score: 60
Period size: 10 Copynumber: 3.9 Consensus size: 10
32873902 ATTTCTAAAA
* *
32873912 AAATGCTTTC
1 AAATGTTTTG
32873922 AAATGTTTTG
1 AAATGTTTTG
32873932 AAATGTTTTG
1 AAATGTTTTG
32873942 AAATGTTTT
1 AAATGTTTT
32873951 ACTGAACGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 27 1.00
ACGTcount: A:0.31, C:0.05, G:0.15, T:0.49
Consensus pattern (10 bp):
AAATGTTTTG
Found at i:32880992 original size:68 final size:68
Alignment explanation
Indices: 32880825--32881000 Score: 184
Period size: 68 Copynumber: 2.6 Consensus size: 68
32880815 TAGTACCACC
* * * *
32880825 CATGTGACCTAGC--CA-ATTTATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGTGACCTAGCTACACATATATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAAT
32880887 CACA
65 CACA
** * *
32880891 CATGTGACCTAGCTACATTTATCTCTCCCGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGT
1 CATGTGACCTAGCTACACATATATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGA
32880953 ATCACA
63 ATCACA
32880959 CATGTGACCTAGCTACTACATAGTATCTCGTAGCTCTCTTGT
1 CATGTGACCTAGCTAC-ACATA-TATCTCGTAGCTCTCTTGT
32881001 ACACATGATG
Statistics
Matches: 92, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
66 13 0.14
68 39 0.42
69 8 0.09
70 6 0.07
71 26 0.28
ACGTcount: A:0.22, C:0.28, G:0.16, T:0.34
Consensus pattern (68 bp):
CATGTGACCTAGCTACACATATATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATC
ACA
Found at i:32888027 original size:71 final size:70
Alignment explanation
Indices: 32887893--32888022 Score: 167
Period size: 71 Copynumber: 1.9 Consensus size: 70
32887883 AGCCAATTTA
* * * *
32887893 TCCCGTAGCTCTCTTGTCTACATGGATTCCTTCACTTGGAATCACACATGTGACCTAGCTACATT
1 TCCCGTAGCTCTCTTGTCTACATGGATTACATCAC-TCGAATCACACATGTGACCTAACTACATT
32887958 TATCTC
65 TATCTC
* *
32887964 TCCCGTAGCTCTCTTGTCTACATGGGA-TACATC-C-CGTATCACACATGTGACCTACCTAC
1 TCCCGTAGCTCTCTTGTCTACAT-GGATTACATCACTCGAATCACACATGTGACCTAACTAC
32888023 TACATAGTAT
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
68 22 0.42
70 1 0.02
71 27 0.51
72 3 0.06
ACGTcount: A:0.22, C:0.32, G:0.15, T:0.32
Consensus pattern (70 bp):
TCCCGTAGCTCTCTTGTCTACATGGATTACATCACTCGAATCACACATGTGACCTAACTACATTT
ATCTC
Found at i:32896500 original size:46 final size:47
Alignment explanation
Indices: 32896400--32896531 Score: 173
Period size: 47 Copynumber: 2.8 Consensus size: 47
32896390 ATATTTGTGT
32896400 GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCATTGAGATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCATTGAGATGAGA
* *
32896447 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCT-TGATGTA-A
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCAT-TGAGATG-AGA
*
32896493 G-TCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATT
1 GCT-AGTGTAAGA-CATGTCTGGGACATGGCATCGGCATT
32896532 ATACCCTATT
Statistics
Matches: 76, Mismatches: 4, Indels: 10
0.84 0.04 0.11
Matches are distributed among these distances:
45 1 0.01
46 24 0.32
47 43 0.57
48 8 0.11
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCATTGAGATGAGA
Found at i:32899191 original size:13 final size:13
Alignment explanation
Indices: 32899173--32899197 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32899163 GCCTCGTGTA
32899173 GCCGAAGCTATTC
1 GCCGAAGCTATTC
32899186 GCCGAAGCTATT
1 GCCGAAGCTATT
32899198 TCGAACCGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (13 bp):
GCCGAAGCTATTC
Found at i:32902888 original size:47 final size:47
Alignment explanation
Indices: 32902761--32902890 Score: 155
Period size: 46 Copynumber: 2.8 Consensus size: 47
32902751 TGTAACCCGC
32902761 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG-GCGTTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGAGCGTTCACAT
*
32902807 CCATAAGTGAAC-CTGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTC-GGACTCAACTCAACGAGCTCGGA-G-C--GTTCACAT
*
32902857 -C-TCA-CGAACTCGGACTCAACTCAACGAGCTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
32902891 ACTCAAATAT
Statistics
Matches: 74, Mismatches: 3, Indels: 13
0.82 0.03 0.14
Matches are distributed among these distances:
45 1 0.01
46 33 0.45
47 27 0.36
48 4 0.05
49 2 0.03
50 4 0.05
51 3 0.04
ACGTcount: A:0.29, C:0.32, G:0.21, T:0.18
Consensus pattern (47 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGAGCGTTCACAT
Found at i:32906302 original size:34 final size:35
Alignment explanation
Indices: 32906264--32906334 Score: 83
Period size: 35 Copynumber: 2.1 Consensus size: 35
32906254 CACATTTTCC
* *
32906264 TATCTT-TATGTTAGA-ACTTAATTTTTTATTTTGG
1 TATCTTGTATG-TAGATACTTAACTGTTTATTTTGG
* *
32906298 TATCTTGTTTGTAGATACTTGACTGTTTATTTTGG
1 TATCTTGTATGTAGATACTTAACTGTTTATTTTGG
32906333 TA
1 TA
32906335 CATTAATGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
34 10 0.32
35 21 0.68
ACGTcount: A:0.21, C:0.07, G:0.15, T:0.56
Consensus pattern (35 bp):
TATCTTGTATGTAGATACTTAACTGTTTATTTTGG
Found at i:32911118 original size:29 final size:29
Alignment explanation
Indices: 32911076--32911132 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
32911066 TTATGGAAGA
* * *
32911076 GATGGAGAACTTGTTCGTTGAGAGTTCGC
1 GATGAAGAACTTGTTCATTGAGAATTCGC
32911105 GATGAAGAACTTGTTCATTGAGAATTCG
1 GATGAAGAACTTGTTCATTGAGAATTCG
32911133 TGTCAAGGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.26, C:0.12, G:0.30, T:0.32
Consensus pattern (29 bp):
GATGAAGAACTTGTTCATTGAGAATTCGC
Found at i:32913398 original size:31 final size:29
Alignment explanation
Indices: 32913362--32913433 Score: 83
Period size: 32 Copynumber: 2.3 Consensus size: 29
32913352 AATTAAATCA
32913362 AAATTAAAGTTT-TATGTATAACTTTGAACC
1 AAATTAAAGTTTATATGTATAA--TTGAACC
*
32913392 ACAATTAAAAGTTTCATATTTATAATTGAACC
1 A-AATT-AAAGTTT-ATATGTATAATTGAACC
32913424 AAATTAAAGT
1 AAATTAAAGT
32913434 CCATGTATTA
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
30 6 0.16
31 8 0.22
32 15 0.41
34 8 0.22
ACGTcount: A:0.44, C:0.10, G:0.08, T:0.38
Consensus pattern (29 bp):
AAATTAAAGTTTATATGTATAATTGAACC
Found at i:32914081 original size:23 final size:23
Alignment explanation
Indices: 32914055--32914121 Score: 75
Period size: 23 Copynumber: 2.9 Consensus size: 23
32914045 TGATTTAAAC
32914055 AAATATTTATATTTATATAAT-TA
1 AAATATTTATATTT-TATAATATA
*
32914078 AAAT-TTTCATATTTTATACTATA
1 AAATATTT-ATATTTTATAATATA
*
32914101 AAATATTTATTATTTTTTAAT
1 AAATATTTA-TATTTTATAAT
32914122 GCAATCAGGG
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
22 8 0.22
23 17 0.46
24 12 0.32
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (23 bp):
AAATATTTATATTTTATAATATA
Found at i:32914683 original size:16 final size:15
Alignment explanation
Indices: 32914658--32914687 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
32914648 TATTTAAAAT
32914658 TTAAAATTATTATTG
1 TTAAAATTATTATTG
32914673 TTAATAATTATTATT
1 TTAA-AATTATTATT
32914688 AAAATAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (15 bp):
TTAAAATTATTATTG
Found at i:32916395 original size:12 final size:13
Alignment explanation
Indices: 32916372--32916400 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
32916362 GGTTGGTCTA
32916372 CTTTTCTCTTCTT
1 CTTTTCTCTTCTT
32916385 CTTTT-TCTTCTT
1 CTTTTCTCTTCTT
32916397 CTTT
1 CTTT
32916401 GCATTTGGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (13 bp):
CTTTTCTCTTCTT
Found at i:32917704 original size:26 final size:25
Alignment explanation
Indices: 32917658--32917708 Score: 59
Period size: 26 Copynumber: 2.0 Consensus size: 25
32917648 ACAAAAACTT
*
32917658 CATAATCCTAATAATTATCAATATCA
1 CATAATACTAATAATTATCAA-ATCA
*
32917684 CATAATACTAA-ATTTATTCAAATCA
1 CATAATACTAATAATTA-TCAAATCA
32917709 TTTTTAAGCT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 8 0.36
26 14 0.64
ACGTcount: A:0.47, C:0.18, G:0.00, T:0.35
Consensus pattern (25 bp):
CATAATACTAATAATTATCAAATCA
Found at i:32926033 original size:37 final size:37
Alignment explanation
Indices: 32925983--32926061 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
32925973 TTATTACGAA
* *
32925983 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
32926020 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
32926057 GTCTT
1 GTCTT
32926062 TAGAGCTGGA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:32926295 original size:47 final size:47
Alignment explanation
Indices: 32926178--32926705 Score: 829
Period size: 47 Copynumber: 11.4 Consensus size: 47
32926168 CCCTTCGGGA
* * * * * * *
32926178 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACT-CGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32926224 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32926271 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA--C
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32926316 C-TAT-AC---TATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32926358 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32926405 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32926452 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32926499 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32926546 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32926593 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32926640 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32926687 CTTATCACATATATACACT
1 CTTATCACATATATACACT
32926706 GTCTTGGCTG
Statistics
Matches: 450, Mismatches: 24, Indels: 15
0.92 0.05 0.03
Matches are distributed among these distances:
40 32 0.07
42 2 0.00
43 5 0.01
44 5 0.01
45 2 0.00
46 35 0.08
47 369 0.82
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32930314 original size:40 final size:40
Alignment explanation
Indices: 32930257--32930439 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 40
32930247 CCAGCATGAT
* *
32930257 TGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
32930297 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * *
32930337 TGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATATA-TCACTAGCACGAA
* *
32930378 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGA-CTTAGCCCGGATAT-ATCAC-TAGCACGAA
*
32930418 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
32930440 CATCATTCGA
Statistics
Matches: 121, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 3 0.02
40 98 0.81
41 20 0.17
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:32930784 original size:29 final size:29
Alignment explanation
Indices: 32930745--32930823 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
32930735 CTTAATAATC
*
32930745 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
32930775 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
32930804 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
32930824 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:32930866 original size:43 final size:43
Alignment explanation
Indices: 32930805--32930898 Score: 188
Period size: 43 Copynumber: 2.2 Consensus size: 43
32930795 TGCATTTCAA
32930805 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
32930848 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
32930891 GCCCGCAC
1 GCCCGCAC
32930899 TAACTTATTG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 51 1.00
ACGTcount: A:0.27, C:0.37, G:0.15, T:0.21
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:32930925 original size:15 final size:15
Alignment explanation
Indices: 32930882--32930925 Score: 61
Period size: 17 Copynumber: 2.8 Consensus size: 15
32930872 ACAACCGTGA
32930882 ACACTTATTGCCCGC
1 ACACTTATTGCCCGC
32930897 ACTAACTTATTGCCCGC
1 AC--ACTTATTGCCCGC
*
32930914 ACACTTAGTGCC
1 ACACTTATTGCC
32930926 AATCTCACAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
15 11 0.42
17 15 0.58
ACGTcount: A:0.23, C:0.36, G:0.14, T:0.27
Consensus pattern (15 bp):
ACACTTATTGCCCGC
Found at i:32930934 original size:60 final size:60
Alignment explanation
Indices: 32930841--32930958 Score: 236
Period size: 60 Copynumber: 2.0 Consensus size: 60
32930831 AACCGTGAAC
32930841 ACTTATTGCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCCCGCACTA
1 ACTTATTGCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCCCGCACTA
32930901 ACTTATTGCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCCCGCAC
1 ACTTATTGCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCCCGCAC
32930959 CTTTAGTGCT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 58 1.00
ACGTcount: A:0.26, C:0.36, G:0.14, T:0.25
Consensus pattern (60 bp):
ACTTATTGCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCCCGCACTA
Found at i:32932868 original size:37 final size:37
Alignment explanation
Indices: 32932818--32932896 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
32932808 TTATTACGAA
* *
32932818 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
32932855 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
32932892 GTCTT
1 GTCTT
32932897 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:32933092 original size:47 final size:47
Alignment explanation
Indices: 32933014--32933443 Score: 693
Period size: 47 Copynumber: 9.2 Consensus size: 47
32933004 CCCTTCGGGA
** * * * * * *
32933014 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
32933061 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32933108 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
32933155 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32933202 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
32933249 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
32933296 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32933343 CTTATCACACATATACACTTTCA-ATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
32933389 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
32933436 CTT-TCACA
1 CTTATCACA
32933444 TTCATCACAT
Statistics
Matches: 364, Mismatches: 18, Indels: 3
0.95 0.05 0.01
Matches are distributed among these distances:
46 50 0.14
47 314 0.86
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32933175 original size:94 final size:94
Alignment explanation
Indices: 32933014--32933672 Score: 892
Period size: 94 Copynumber: 7.2 Consensus size: 94
32933004 CCCTTCGGGA
** * * * * * * * * *
32933014 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAC
32933079 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* * *
32933108 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATTACATATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAC
*
32933173 TTTCACATTCATCACATCGGCTATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
32933202 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAC
32933267 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
32933296 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAC
*
32933361 TTTCA-ATTCATCACATCGGCTATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
32933389 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT-T--CACAT-T-CA-
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAC
** * **
32933448 --TCACA-TCGGC-CATTAGGCC-TTATCAC
66 TTTCACATTCATCACA-TCGGCCATTA-GGC
* * *
32933474 ACATAT-ACACT--------TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 -CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACA
*
32933530 CTTTCACATTCATCACATCGGCTATTAGGC
65 CTTTCACATTCATCACATCGGCCATTAGGC
*
32933560 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAC
32933625 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
32933654 CTTATCACATATATACACT
1 CTTATCACACATATACACT
32933673 GTCTTGGCTG
Statistics
Matches: 503, Mismatches: 38, Indels: 48
0.85 0.06 0.08
Matches are distributed among these distances:
77 31 0.06
78 1 0.00
80 4 0.01
81 1 0.00
82 2 0.00
84 5 0.01
85 24 0.05
86 16 0.03
87 5 0.01
88 2 0.00
89 1 0.00
90 5 0.01
92 1 0.00
93 72 0.14
94 333 0.66
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (94 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:32933268 original size:141 final size:141
Alignment explanation
Indices: 32933014--32933672 Score: 1030
Period size: 141 Copynumber: 4.8 Consensus size: 141
32933004 CCCTTCGGGA
* * * * * * * * * *
32933014 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAC
32933079 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
32933144 GGCCATTAGGC
131 GGCCATTAGGC
* *
32933155 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAC
* *
32933220 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
32933285 GGCCATTAGGC
131 GGCCATTAGGC
*
32933296 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAC
* *
32933361 TTTCA-ATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
32933425 GGCCATTAGG-
131 GGCCATTAGGC
32933435 -----C-C-T-T-T-CA----CA--TTCATCACATCGGCCATTAGGCCTTATCACACATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAC
32933484 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
32933549 GGCTATTAGGC
131 GGCCATTAGGC
32933560 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAC
32933625 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
32933673 GTCTTGGCTG
Statistics
Matches: 479, Mismatches: 21, Indels: 36
0.89 0.04 0.07
Matches are distributed among these distances:
123 45 0.09
124 66 0.14
125 2 0.00
129 2 0.00
130 2 0.00
131 2 0.00
132 1 0.00
133 2 0.00
134 2 0.00
135 2 0.00
139 2 0.00
140 69 0.14
141 282 0.59
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:32933442 original size:30 final size:30
Alignment explanation
Indices: 32933406--32933474 Score: 129
Period size: 30 Copynumber: 2.3 Consensus size: 30
32933396 CACATATACA
32933406 CTTTCACATTCATCACATCGGCCATTAGGC
1 CTTTCACATTCATCACATCGGCCATTAGGC
32933436 CTTTCACATTCATCACATCGGCCATTAGGC
1 CTTTCACATTCATCACATCGGCCATTAGGC
32933466 CTTATCACA
1 CTT-TCACA
32933475 CATATACACT
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 33 0.87
31 5 0.13
ACGTcount: A:0.25, C:0.33, G:0.12, T:0.30
Consensus pattern (30 bp):
CTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32933452 original size:77 final size:77
Alignment explanation
Indices: 32933360--32933522 Score: 301
Period size: 77 Copynumber: 2.1 Consensus size: 77
32933350 CACATATACA
*
32933360 CTTTCA-ATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACAT
1 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACAT
32933424 CGGCCATTAGGC
66 CGGCCATTAGGC
32933436 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACAT
1 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACAT
32933501 CGGCCATTAGGC
66 CGGCCATTAGGC
32933513 CTTATCACAT
1 CTT-TCACAT
32933523 ATATACACTT
Statistics
Matches: 84, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
76 6 0.07
77 72 0.86
78 6 0.07
ACGTcount: A:0.28, C:0.31, G:0.10, T:0.31
Consensus pattern (77 bp):
CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACAT
CGGCCATTAGGC
Found at i:32933487 original size:47 final size:47
Alignment explanation
Indices: 32933436--32933672 Score: 447
Period size: 47 Copynumber: 5.0 Consensus size: 47
32933426 GCCATTAGGC
*
32933436 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACA
1 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
32933483 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
*
32933530 CTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACA
1 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
*
32933577 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACA
1 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
32933624 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
32933671 CT
1 CT
32933673 GTCTTGGCTG
Statistics
Matches: 185, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 185 1.00
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
Found at i:32935084 original size:47 final size:47
Alignment explanation
Indices: 32935023--32935558 Score: 883
Period size: 47 Copynumber: 11.4 Consensus size: 47
32935013 CAGCCAAGAC
32935023 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
32935070 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
32935117 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
32935164 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAG
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
32935211 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTTAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
32935258 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
32935305 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGGA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
32935352 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
32935399 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
32935446 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
32935493 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
32935540 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
32935559 TCCCGAAGGG
Statistics
Matches: 460, Mismatches: 29, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 460 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:32935732 original size:37 final size:37
Alignment explanation
Indices: 32935676--32935754 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
32935666 CCGAGCTCTA
* *
32935676 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
32935713 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
32935750 AAGAC
1 AAGAC
32935755 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:32938205 original size:17 final size:17
Alignment explanation
Indices: 32938174--32938206 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
32938164 GCTAAAAACT
32938174 TAATTTTAAAGACTAAA
1 TAATTTTAAAGACTAAA
32938191 TAATGTTTAAA-ACTAA
1 TAAT-TTTAAAGACTAA
32938207 GTAGAAGTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.52, C:0.06, G:0.06, T:0.36
Consensus pattern (17 bp):
TAATTTTAAAGACTAAA
Found at i:32938868 original size:66 final size:65
Alignment explanation
Indices: 32938735--32939139 Score: 227
Period size: 66 Copynumber: 6.1 Consensus size: 65
32938725 AGCCGCGATT
* * * * * * * ** * * *
32938735 TTAGGTCAGTGAGCTATATGGGTTGTGATCTTAGGTCAACAAACCCAAATAGTTTTGGTTGCAAT
1 TTAGGTCGGTGAGCCACATAGGTCGTGATCTTATGTCAACGAACCTGAATAATTTAGGCTG-AAT
32938800 C
65 C
* * * * *
32938801 TTAGGTAGGCGAGCCACATAGGTCGTGATCTTATGTCAATGGACCTGAATAATTTCAGTCATG-A
1 TTAGGTCGGTGAGCCACATAGGTCGTGATCTTATGTCAACGAACCTGAATAATTT-AGGC-TGAA
32938865 TC
64 TC
*** * * * * * * *
32938867 TTAGGTCGGTGAGCTGTATGGGTTGTGATCTTAGGTCTACGAACCCGAAAAATTTTGGCTGCAAT
1 TTAGGTCGGTGAGCCACATAGGTCGTGATCTTATGTCAACGAACCTGAATAATTTAGGCTG-AAT
*
32938932 T
65 C
* *
32938933 TTAGGTCGGTGAGCCACATAGGTCGTGATCTTATGTCAACGAACCTGAATAATTTTGGCTGTGAT
1 TTAGGTCGGTGAGCCACATAGGTCGTGATCTTATGTCAACGAACCTGAATAATTTAGGCTG-AAT
32938998 C
65 C
* ** *** * * * * ** * * * *
32938999 TTAGGTTGGCAAGCTGTATGGGTTGTGATCTTAGGTCAGCGAACCCAAATTATTTTGGATGCGAT
1 TTAGGTCGGTGAGCCACATAGGTCGTGATCTTATGTCAACGAACCTGAATAATTTAGGCTG-AAT
32939064 C
65 C
**** * * ** * **
32939065 TTAGGTCAACAAGCCACATAGGTCGTGATCTTACGTCAGCGAACCCAAATAATTTCAGTCACAAT
1 TTAGGTCGGTGAGCCACATAGGTCGTGATCTTATGTCAACGAACCTGAATAATTT-AGGCTGAAT
32939130 C
65 C
32939131 TTAGGTCGG
1 TTAGGTCGG
32939140 CTAGTTGTAT
Statistics
Matches: 256, Mismatches: 78, Indels: 10
0.74 0.23 0.03
Matches are distributed among these distances:
64 2 0.01
65 2 0.01
66 248 0.97
67 2 0.01
68 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (65 bp):
TTAGGTCGGTGAGCCACATAGGTCGTGATCTTATGTCAACGAACCTGAATAATTTAGGCTGAATC
Found at i:32938979 original size:132 final size:132
Alignment explanation
Indices: 32938735--32939202 Score: 550
Period size: 132 Copynumber: 3.6 Consensus size: 132
32938725 AGCCGCGATT
* * * * * *
32938735 TTAGGTCAGTGAGCTATATGGGTTGTGATCTTAGGTCAACAAACCCAAATAGTTTTGGTTGCAAT
1 TTAGGTCGGTGAGCTGTATGGGTTGTGATCTTAGGTCAGCGAACCCAAATAATTTTGGCTGCAAT
* * *
32938800 CTTAGGTAGGCGAGCCACATAGGTCGTGATCTTATGTCAATGGACCTGAATAATTTCAGTCATGA
66 CTTAGGTCGGCGAGCCACATAGGTCGTGATCTTATGTCAACGAACCTGAATAATTTCAGTCATGA
32938865 TC
131 TC
32938867 TTAGGTCGGTGAGCTGTATGGGTTGTGATCTTAGGTCTA-CGAACCCGAAA-AATTTTGGCTGCA
1 TTAGGTCGGTGAGCTGTATGGGTTGTGATCTTAGGTC-AGCGAACCC-AAATAATTTTGGCTGCA
* * * * *
32938930 ATTTTAGGTCGGTGAGCCACATAGGTCGTGATCTTATGTCAACGAACCTGAATAATTT-TGGCTG
64 ATCTTAGGTCGGCGAGCCACATAGGTCGTGATCTTATGTCAACGAACCTGAATAATTTCAGTC-A
32938994 TGATC
128 TGATC
* ** * * *
32938999 TTAGGTTGGCAAGCTGTATGGGTTGTGATCTTAGGTCAGCGAACCCAAATTATTTTGGATGCGAT
1 TTAGGTCGGTGAGCTGTATGGGTTGTGATCTTAGGTCAGCGAACCCAAATAATTTTGGCTGCAAT
** * * * ** **
32939064 CTTAGGTCAACAAGCCACATAGGTCGTGATCTTACGTCAGCGAACCCAAATAATTTCAGTCACAA
66 CTTAGGTCGGCGAGCCACATAGGTCGTGATCTTATGTCAACGAACCTGAATAATTTCAGTCATGA
32939129 TC
131 TC
* ** * * *
32939131 TTAGGTCGGCT-AGTTGTATGGCCTGTGATCTTAGGTCAGTGAAACCAAATAATTTTGGCTGCGA
1 TTAGGTCGG-TGAGCTGTATGGGTTGTGATCTTAGGTCAGCGAACCCAAATAATTTTGGCTGCAA
32939195 T-TTAGGTC
65 TCTTAGGTC
32939203 AGCAAGCTGT
Statistics
Matches: 287, Mismatches: 42, Indels: 15
0.83 0.12 0.04
Matches are distributed among these distances:
131 13 0.05
132 268 0.93
133 6 0.02
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.32
Consensus pattern (132 bp):
TTAGGTCGGTGAGCTGTATGGGTTGTGATCTTAGGTCAGCGAACCCAAATAATTTTGGCTGCAAT
CTTAGGTCGGCGAGCCACATAGGTCGTGATCTTATGTCAACGAACCTGAATAATTTCAGTCATGA
TC
Found at i:32939159 original size:66 final size:65
Alignment explanation
Indices: 32938996--32939269 Score: 230
Period size: 66 Copynumber: 4.2 Consensus size: 65
32938986 TTTGGCTGTG
** ** * *
32938996 ATCTTAGGTTGGCAAGCTGTATGGGTTGTGATCTTAGGTCAGCGAACCCAAATTATTTTGGAT-G
1 ATCTTAGGTCAGCAAGCTGTATGGCCTGTGATCTTAGGTCAGCGAACCCAAA-TAATTTAG-TCG
*
32939060 CG
64 CA
* *** * * *
32939062 ATCTTAGGTCAACAAGCCACATAGGTC-GTGATCTTACGTCAGCGAACCCAAATAATTTCAGTCA
1 ATCTTAGGTCAGCAAGCTGTAT-GGCCTGTGATCTTAGGTCAGCGAACCCAAATAATTT-AGTCG
32939126 CA
64 CA
* * * * * * *
32939128 ATCTTAGGTCGGCTAGTTGTATGGCCTGTGATCTTAGGTCAGTGAAACCAAATAATTTTGGCTGC
1 ATCTTAGGTCAGCAAGCTGTATGGCCTGTGATCTTAGGTCAGCGAACCCAAATAATTTAGTC-GC
*
32939193 G
65 A
** * * *
32939194 AT-TTAGGTCAGCAAGCTGTATGGGTTGTGATCTTAGGTCAACGAGCCCAAATAATTTTAGTTGC
1 ATCTTAGGTCAGCAAGCTGTATGGCCTGTGATCTTAGGTCAGCGAACCCAAATAA-TTTAGTCGC
32939258 A
65 A
32939259 ATCTTAGGTCA
1 ATCTTAGGTCA
32939270 ATGAAGGTTA
Statistics
Matches: 160, Mismatches: 41, Indels: 14
0.74 0.19 0.07
Matches are distributed among these distances:
65 58 0.36
66 100 0.62
67 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (65 bp):
ATCTTAGGTCAGCAAGCTGTATGGCCTGTGATCTTAGGTCAGCGAACCCAAATAATTTAGTCGCA
Found at i:32943411 original size:43 final size:43
Alignment explanation
Indices: 32943357--32943470 Score: 138
Period size: 43 Copynumber: 2.7 Consensus size: 43
32943347 CCGAAAAAAC
* *
32943357 GCCGCTAAAAGTCATGGCTTTTAGCGGCGTTTGTGGGAAAAGT
1 GCCGCTAAAAGTCATGACTTTTAGCGGCGTTTGTGAGAAAAGT
* * ** ** *
32943400 GCCTCTAAAAGTTATTTCTTTTAAAGGCGTTTGTGATAAAAGT
1 GCCGCTAAAAGTCATGACTTTTAGCGGCGTTTGTGAGAAAAGT
*
32943443 GCCGCTAAAAGTCATGACTTTTTGCGGC
1 GCCGCTAAAAGTCATGACTTTTAGCGGC
32943471 ATTTTTGTTA
Statistics
Matches: 56, Mismatches: 15, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
43 56 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.32
Consensus pattern (43 bp):
GCCGCTAAAAGTCATGACTTTTAGCGGCGTTTGTGAGAAAAGT
Found at i:32943878 original size:21 final size:21
Alignment explanation
Indices: 32943853--32943892 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
32943843 CTGCTCTGCT
*
32943853 CTGCCTCCCTTGCTGCTGCCA
1 CTGCCTCCCTCGCTGCTGCCA
*
32943874 CTGCCTCCCTCGCTTCTGC
1 CTGCCTCCCTCGCTGCTGC
32943893 ATCCGCTCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.03, C:0.50, G:0.17, T:0.30
Consensus pattern (21 bp):
CTGCCTCCCTCGCTGCTGCCA
Found at i:32944291 original size:13 final size:13
Alignment explanation
Indices: 32944273--32944305 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
32944263 CTAACGATGA
*
32944273 ATTATAATTAAAC
1 ATTATAATGAAAC
32944286 ATTATAATGAAAC
1 ATTATAATGAAAC
32944299 ATTATAA
1 ATTATAA
32944306 ATATTTATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.55, C:0.06, G:0.03, T:0.36
Consensus pattern (13 bp):
ATTATAATGAAAC
Found at i:32947636 original size:12 final size:12
Alignment explanation
Indices: 32947621--32947646 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
32947611 ATCATCCTCT
32947621 TCATCAGATTCA
1 TCATCAGATTCA
32947633 TCATCAGATTCA
1 TCATCAGATTCA
32947645 TC
1 TC
32947647 CCTCGATCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.35
Consensus pattern (12 bp):
TCATCAGATTCA
Found at i:32949528 original size:52 final size:52
Alignment explanation
Indices: 32949444--32949669 Score: 294
Period size: 52 Copynumber: 4.3 Consensus size: 52
32949434 CGTAAGGTAA
* * * * * * *
32949444 GTAAGTTTTGTATGTTATGCAAGTTATGATATGATATAAATTTATATAAGGTAT
1 GTAAGTTATGTAAGTTATGTAAGTTATTATATGATATATATTTATGT-A-TTAT
*
32949498 GT-A-TTATGTAAGTTTTGTAAGTTATTATATGATATATATTTATGTATTAT
1 GTAAGTTATGTAAGTTATGTAAGTTATTATATGATATATATTTATGTATTAT
*
32949548 GTAAGTTTTGTAAGTTATGTAAGTTATTATATGATATATATTTATGTATTAT
1 GTAAGTTATGTAAGTTATGTAAGTTATTATATGATATATATTTATGTATTAT
* * *
32949600 GTAAGTTTTGTAAGTTACGTAAGTTATGATATGATATATATTTATGTATTAT
1 GTAAGTTATGTAAGTTATGTAAGTTATTATATGATATATATTTATGTATTAT
* *
32949652 GTAAGTTTTGTAAATTAT
1 GTAAGTTATGTAAGTTAT
32949670 TATATGATAT
Statistics
Matches: 156, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
50 5 0.03
51 2 0.01
52 146 0.94
53 1 0.01
54 2 0.01
ACGTcount: A:0.33, C:0.01, G:0.16, T:0.50
Consensus pattern (52 bp):
GTAAGTTATGTAAGTTATGTAAGTTATTATATGATATATATTTATGTATTAT
Found at i:32949561 original size:9 final size:9
Alignment explanation
Indices: 32949544--32949627 Score: 68
Period size: 9 Copynumber: 9.6 Consensus size: 9
32949534 TATTTATGTA
32949544 TTATGTAAG
1 TTATGTAAG
*
32949553 TTTTGTAAG
1 TTATGTAAG
32949562 TTATGTAAG
1 TTATGTAAG
32949571 TTAT-TATA-
1 TTATGTA-AG
* * *
32949579 TGATATATAT
1 TTATGTA-AG
32949589 TTATGT-A-
1 TTATGTAAG
32949596 TTATGTAAG
1 TTATGTAAG
*
32949605 TTTTGTAAG
1 TTATGTAAG
*
32949614 TTACGTAAG
1 TTATGTAAG
32949623 TTATG
1 TTATG
32949628 ATATGATATA
Statistics
Matches: 61, Mismatches: 9, Indels: 10
0.76 0.11 0.12
Matches are distributed among these distances:
7 6 0.10
8 7 0.11
9 44 0.72
10 4 0.07
ACGTcount: A:0.31, C:0.01, G:0.18, T:0.50
Consensus pattern (9 bp):
TTATGTAAG
Found at i:32952713 original size:116 final size:114
Alignment explanation
Indices: 32952450--32952881 Score: 503
Period size: 116 Copynumber: 3.7 Consensus size: 114
32952440 TAATTTAACA
* ** *
32952450 TTAGCGGCGTTTATACCCTAGCGCCGCTAAAAACGCACCTATTGCGGTGTTTTACCCCAAAACGC
1 TTAGCGGCGTTTATACCCTAGCGCCGCTAAAAACGCACATATTGCGGCATTTTA-CCTAAAACGC
* *
32952515 CATTAATAATTCAACAAAACGTCG-CTGTTTTGTTTTAAACGAAATCACCT
65 CACTAATAATCCAACAAAACGTCGCCT-TTTTGTTTTAAACGAAATCACCT
* * * * * *
32952565 TTAGCAGCGTTTTTGA-CCTAGCACCGCCAAAAACGCACATATTGCGGCATTTAACCTTAAAATG
1 TTAGCGGCGTTTAT-ACCCTAGCGCCGCTAAAAACGCACATATTGCGGCATTTTACC-TAAAACG
* *
32952629 CCACTAATAATCCAACAAAACGTCGCCCTTTTTGTTTTAACCGGAATCACCT
64 CCACTAATAATCCAACAAAACGTCG-CCTTTTTGTTTTAAACGAAATCACCT
* * *
32952681 TTAGTGGCGTTTATACCCTAGCGCCGCTAAAAACGCACCA-ATTACGGCGATTTTTTCCTAAAAC
1 TTAGCGGCGTTTATACCCTAGCGCCGCTAAAAACGCA-CATATTGCGGC-A-TTTTACCTAAAAC
* * *
32952745 GCCACTAATAATCCAACAAAACTTCGCCGTTTTGTTTTAAACGAAATCACCA
63 GCCACTAATAATCCAACAAAACGTCGCCTTTTTGTTTTAAACGAAATCACCT
* * * **
32952797 TTAGTGGCGTTTATACCCTAGTGCCGCTAAAAACGCACCTATTGCAACATTTTACAC-AAAACGC
1 TTAGCGGCGTTTATACCCTAGCGCCGCTAAAAACGCACATATTGCGGCATTTTAC-CTAAAACGC
* *
32952861 CACTAACAAATCCAATAAAAC
65 CACTAA-TAATCCAACAAAAC
32952882 AGTGTCATTT
Statistics
Matches: 270, Mismatches: 36, Indels: 22
0.82 0.11 0.07
Matches are distributed among these distances:
114 20 0.07
115 88 0.33
116 122 0.45
117 35 0.13
118 5 0.02
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.27
Consensus pattern (114 bp):
TTAGCGGCGTTTATACCCTAGCGCCGCTAAAAACGCACATATTGCGGCATTTTACCTAAAACGCC
ACTAATAATCCAACAAAACGTCGCCTTTTTGTTTTAAACGAAATCACCT
Found at i:32952875 original size:232 final size:230
Alignment explanation
Indices: 32952450--32952881 Score: 580
Period size: 232 Copynumber: 1.9 Consensus size: 230
32952440 TAATTTAACA
* * *
32952450 TTAGCGGCGTTTATACCCTAGCGCCGCTAAAAACGCACCTATTGCGGTGTTTTACCCCAAAACGC
1 TTAGCGGCGTTTATACCCTAGCGCCGCTAAAAACGCACCAATTACGGCGTTTTACCCCAAAACGC
* * * * *
32952515 CATTAATAATTCAACAAAACGTCGCTGTTTTGTTTTAAACGAAATCACCTTTAGCAGCGTTTTTG
66 CACTAATAATCCAACAAAACGTCGCCGTTTTGTTTTAAACGAAATCACCATTAGCAGCGTTTATG
** * *
32952580 ACCTAGCACCGCCAAAAACGCACATATTGCGGCATTTAACCTTAAAATGCCACTAATAATCCAAC
131 ACCTAGCACCGCCAAAAACGCACATATTGCAACATTTAACC-TAAAACGCCACTAAAAATCCAAC
32952645 AAAACGTCGCCCTTTTTGTTTTAACCGGAATCACCT
195 AAAACGTCGCCCTTTTTGTTTTAACCGGAATCACCT
* ** *
32952681 TTAGTGGCGTTTATACCCTAGCGCCGCTAAAAACGCACCAATTACGGCGATTTTTTCCTAAAACG
1 TTAGCGGCGTTTATACCCTAGCGCCGCTAAAAACGCACCAATTACGGCG-TTTTACCCCAAAACG
* **
32952746 CCACTAATAATCCAACAAAACTTCGCCGTTTTGTTTTAAACGAAATCACCATTAGTGGCGTTTAT
65 CCACTAATAATCCAACAAAACGTCGCCGTTTTGTTTTAAACGAAATCACCATTAGCAGCGTTTAT
** * * *
32952811 -ACCCTAGTGCCGCTAAAAACGCACCTATTGCAACATTTTACAC-AAAACGCCACTAACAAATCC
130 GA-CCTAGCACCGCCAAAAACGCACATATTGCAACATTTAAC-CTAAAACGCCACTAA-AAATCC
*
32952874 AATAAAAC
192 AACAAAAC
32952882 AGTGTCATTT
Statistics
Matches: 172, Mismatches: 25, Indels: 7
0.84 0.12 0.03
Matches are distributed among these distances:
231 58 0.34
232 113 0.66
233 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.27
Consensus pattern (230 bp):
TTAGCGGCGTTTATACCCTAGCGCCGCTAAAAACGCACCAATTACGGCGTTTTACCCCAAAACGC
CACTAATAATCCAACAAAACGTCGCCGTTTTGTTTTAAACGAAATCACCATTAGCAGCGTTTATG
ACCTAGCACCGCCAAAAACGCACATATTGCAACATTTAACCTAAAACGCCACTAAAAATCCAACA
AAACGTCGCCCTTTTTGTTTTAACCGGAATCACCT
Found at i:32953038 original size:14 final size:16
Alignment explanation
Indices: 32953007--32953038 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
32952997 AATGCTATTT
32953007 AATATAAAATTAAAAA
1 AATATAAAATTAAAAA
32953023 AATAT-AAATTAAAAA
1 AATATAAAATTAAAAA
32953038 A
1 A
32953039 CAATCACTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (16 bp):
AATATAAAATTAAAAA
Found at i:32953189 original size:16 final size:16
Alignment explanation
Indices: 32953170--32953200 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32953160 AAATCTGGAA
*
32953170 AATTTTTTAAAATTTT
1 AATTCTTTAAAATTTT
32953186 AATTCTTTAAAATTT
1 AATTCTTTAAAATTT
32953201 GAAATTATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (16 bp):
AATTCTTTAAAATTTT
Found at i:32953211 original size:17 final size:16
Alignment explanation
Indices: 32953169--32953212 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
32953159 GAAATCTGGA
*
32953169 AAATTTTTTAAAATTT
1 AAATTATTTAAAATTT
* *
32953185 TAATTCTTTAAAATTT
1 AAATTATTTAAAATTT
32953201 GAAATTATTTAA
1 -AAATTATTTAA
32953213 TATATAGATT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
16 14 0.61
17 9 0.39
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.52
Consensus pattern (16 bp):
AAATTATTTAAAATTT
Found at i:32953330 original size:7 final size:7
Alignment explanation
Indices: 32953315--32953352 Score: 58
Period size: 7 Copynumber: 5.3 Consensus size: 7
32953305 ACACTAATTA
32953315 CCCTAAAC
1 CCCT-AAC
32953323 CCCTAAC
1 CCCTAAC
32953330 CCCTAAC
1 CCCTAAC
*
32953337 CCTTAAC
1 CCCTAAC
32953344 CCCTAAC
1 CCCTAAC
32953351 CC
1 CC
32953353 ATGTCCTCTT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
7 24 0.86
8 4 0.14
ACGTcount: A:0.29, C:0.55, G:0.00, T:0.16
Consensus pattern (7 bp):
CCCTAAC
Found at i:32953427 original size:15 final size:16
Alignment explanation
Indices: 32953398--32953427 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32953388 TTCTAAACCC
32953398 TAAACCCCATAACTCA
1 TAAACCCCATAACTCA
32953414 TAAACCCC-TAACTC
1 TAAACCCCATAACTC
32953428 TTAACCCTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.40, C:0.40, G:0.00, T:0.20
Consensus pattern (16 bp):
TAAACCCCATAACTCA
Found at i:32953725 original size:7 final size:7
Alignment explanation
Indices: 32953713--32953760 Score: 51
Period size: 7 Copynumber: 6.7 Consensus size: 7
32953703 CCCATGGCCA
32953713 TTAAACC
1 TTAAACC
32953720 TTAAACC
1 TTAAACC
*
32953727 ATAAAACC
1 -TTAAACC
*
32953735 CTAAACC
1 TTAAACC
* *
32953742 ATAGACC
1 TTAAACC
32953749 TTAAACC
1 TTAAACC
32953756 TTAAA
1 TTAAA
32953761 TATTAAACCC
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
7 27 0.82
8 6 0.18
ACGTcount: A:0.48, C:0.27, G:0.02, T:0.23
Consensus pattern (7 bp):
TTAAACC
Found at i:32953733 original size:15 final size:15
Alignment explanation
Indices: 32953710--32953760 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
32953700 AGACCCATGG
*
32953710 CCATTAAACCTTAAA
1 CCATAAAACCTTAAA
*
32953725 CCATAAAACCCTAAA
1 CCATAAAACCTTAAA
*
32953740 CCAT-AGACCTTAAA
1 CCATAAAACCTTAAA
*
32953754 CCTTAAA
1 CCATAAA
32953761 TATTAAACCC
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
14 11 0.38
15 18 0.62
ACGTcount: A:0.47, C:0.29, G:0.02, T:0.22
Consensus pattern (15 bp):
CCATAAAACCTTAAA
Found at i:32959642 original size:196 final size:195
Alignment explanation
Indices: 32959308--32959693 Score: 718
Period size: 196 Copynumber: 2.0 Consensus size: 195
32959298 TTTCAATATG
32959308 AAAATGGCACCAACTCCCTTATTGAACATAGTCACTGAAAACAAACTCAACAGAAACAACTGTAA
1 AAAATGGCACCAACTCCCTTATTGAACATAGTCACTGAAAACAAACTCAACAGAAACAACTGTAA
*
32959373 GGAATGGAAAAGGAACTTGATAATTGTCTTAAGTTGTGAGAAACTTAAAAATGTTCTTGATACTA
66 GGAATGGAAAAGGAAATTGATAATTGTCTTAAGTTGTGAGAAACTTAAAAATGTTCTTGATACTA
32959438 AGTGCCCTCCGACCACTCAAGTTAAGGCCAGAAAACGCTAGGAAGAGTTTGATGAGATAGCAACA
131 AGTGCCCT-CGACCACTCAAGTTAAGGCCAGAAAACGCTAGGAAGAGTTTGATGAGATAGCAACA
32959503 C
195 C
*
32959504 AAAATGGCACCAACTCCCTTATTGAACATAGTCACTGAAAACAAACTCAACGGAAACAACTGTAA
1 AAAATGGCACCAACTCCCTTATTGAACATAGTCACTGAAAACAAACTCAACAGAAACAACTGTAA
* * *
32959569 TGAATGGAAAAGGAAATTGATAATTGTCTTATGTTGTGAGAAACTTAAAATTGTTCTTGATACTA
66 GGAATGGAAAAGGAAATTGATAATTGTCTTAAGTTGTGAGAAACTTAAAAATGTTCTTGATACTA
32959634 AGTGCCCTCGACCACTCAAGTTAAGGCCAGAAAACGCTAGGAAGAGTTTGATGAGATAGC
131 AGTGCCCTCGACCACTCAAGTTAAGGCCAGAAAACGCTAGGAAGAGTTTGATGAGATAGC
32959694 TTGTTGCTAT
Statistics
Matches: 185, Mismatches: 5, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
195 52 0.28
196 133 0.72
ACGTcount: A:0.39, C:0.18, G:0.19, T:0.24
Consensus pattern (195 bp):
AAAATGGCACCAACTCCCTTATTGAACATAGTCACTGAAAACAAACTCAACAGAAACAACTGTAA
GGAATGGAAAAGGAAATTGATAATTGTCTTAAGTTGTGAGAAACTTAAAAATGTTCTTGATACTA
AGTGCCCTCGACCACTCAAGTTAAGGCCAGAAAACGCTAGGAAGAGTTTGATGAGATAGCAACAC
Found at i:32962838 original size:27 final size:27
Alignment explanation
Indices: 32962803--32962857 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
32962793 TTTGTATATA
32962803 ACTCGAATTTTCAACATATTTTCCTGT
1 ACTCGAATTTTCAACATATTTTCCTGT
32962830 ACTCGAATTTTCAACATATTTTCCTGT
1 ACTCGAATTTTCAACATATTTTCCTGT
32962857 A
1 A
32962858 ACTTCAAATC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.27, C:0.22, G:0.07, T:0.44
Consensus pattern (27 bp):
ACTCGAATTTTCAACATATTTTCCTGT
Found at i:32962893 original size:29 final size:29
Alignment explanation
Indices: 32962860--32962917 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
32962850 TTCCTGTAAC
32962860 TTCAAATCCAACAACAAACTTCAAATCTA
1 TTCAAATCCAACAACAAACTTCAAATCTA
32962889 TTCAAATCCAACAACAAACTTCAAATCTA
1 TTCAAATCCAACAACAAACTTCAAATCTA
32962918 AATGACAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.48, C:0.28, G:0.00, T:0.24
Consensus pattern (29 bp):
TTCAAATCCAACAACAAACTTCAAATCTA
Found at i:32963764 original size:28 final size:30
Alignment explanation
Indices: 32963714--32963770 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 30
32963704 TTACCCTTAA
* *
32963714 TTGAGTCAAAACTAAAATTTTTAATTAAAT
1 TTGAGTCAAAACTAAAATGTTTAAATAAAT
*
32963744 TTGAGT-AAAA-TCAAATGTTTAAATAAA
1 TTGAGTCAAAACTAAAATGTTTAAATAAA
32963771 AGATAAGCTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 14 0.58
29 4 0.17
30 6 0.25
ACGTcount: A:0.49, C:0.05, G:0.09, T:0.37
Consensus pattern (30 bp):
TTGAGTCAAAACTAAAATGTTTAAATAAAT
Found at i:32968239 original size:48 final size:48
Alignment explanation
Indices: 32968168--32968295 Score: 125
Period size: 48 Copynumber: 2.7 Consensus size: 48
32968158 AGCTTTTGTA
* * * *
32968168 TAAGACCATATCTTGGATATGGCTTCGGTAGT-GACATGTGATGC-CATG
1 TAAGACCATGTCTGGGACATGGCTTCGGCA-TCGACATGTGAT-CTCATG
* ** *
32968216 TAAGACCATGTCTGGGACATGGCTTTGGCATCGTTATGTGATCTTATG
1 TAAGACCATGTCTGGGACATGGCTTCGGCATCGACATGTGATCTCATG
* * *
32968264 TAAGACCAGGTCCGGGACATGGCTTTGGCATC
1 TAAGACCATGTCTGGGACATGGCTTCGGCATC
32968296 ATAATGGGAC
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
47 2 0.03
48 66 0.97
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCTTCGGCATCGACATGTGATCTCATG
Found at i:32968319 original size:48 final size:48
Alignment explanation
Indices: 32968213--32968304 Score: 130
Period size: 48 Copynumber: 1.9 Consensus size: 48
32968203 ATGTGATGCC
* * * * * *
32968213 ATGTAAGACCATGTCTGGGACATGGCTTTGGCATCGTTATGTGATCTT
1 ATGTAAGACCAGGTCCGGGACATGGCTTTGGCATCATAATGGGATCGT
32968261 ATGTAAGACCAGGTCCGGGACATGGCTTTGGCATCATAATGGGA
1 ATGTAAGACCAGGTCCGGGACATGGCTTTGGCATCATAATGGGA
32968305 CATCGTAGAA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 39 1.00
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.29
Consensus pattern (48 bp):
ATGTAAGACCAGGTCCGGGACATGGCTTTGGCATCATAATGGGATCGT
Found at i:32968364 original size:45 final size:43
Alignment explanation
Indices: 32968313--32968408 Score: 106
Period size: 42 Copynumber: 2.2 Consensus size: 43
32968303 GACATCGTAG
*
32968313 AAGACCATAG-CTGGGCTATCAACTTTGATATGTGTGATCCCATGT
1 AAGACCATAGTCTGGGC-ATCAACATTGATATGTG-G-TCCCATGT
*** *
32968358 AAGACCAT-GTCTGGGCATTGGCATTGTTATGTGGTCCCATGT
1 AAGACCATAGTCTGGGCATCAACATTGATATGTGGTCCCATGT
32968400 AAGACCATA
1 AAGACCATA
32968409 CCTAGGATAT
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
42 16 0.36
43 1 0.02
44 13 0.30
45 14 0.32
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (43 bp):
AAGACCATAGTCTGGGCATCAACATTGATATGTGGTCCCATGT
Found at i:32968422 original size:42 final size:42
Alignment explanation
Indices: 32968345--32968426 Score: 112
Period size: 42 Copynumber: 2.0 Consensus size: 42
32968335 CTTTGATATG
** *
32968345 TGTGATCCCATGTAAGACCATGTCTGGGCATTGGCATTGTTA
1 TGTGATCCCATGTAAGACCATACCTAGGCATTGGCATTGTTA
*
32968387 TGTGGTCCCATGTAAGACCATACCTAGG-ATATGGCATTGT
1 TGTGATCCCATGTAAGACCATACCTAGGCAT-TGGCATTGT
32968427 CACCCTACCC
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
41 2 0.06
42 33 0.94
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.32
Consensus pattern (42 bp):
TGTGATCCCATGTAAGACCATACCTAGGCATTGGCATTGTTA
Found at i:32977138 original size:21 final size:21
Alignment explanation
Indices: 32977114--32977179 Score: 59
Period size: 21 Copynumber: 3.3 Consensus size: 21
32977104 TTGAGAAATT
32977114 TGGCTGGATGAGGGTGAAGAA
1 TGGCTGGATGAGGGTGAAGAA
** * *
32977135 TGGCT-GAT--TTGAGAA-ATT
1 TGGCTGGATGAGGGTGAAGA-A
32977153 TGGCTGGATGAGGGTGAAGAA
1 TGGCTGGATGAGGGTGAAGAA
32977174 TGGCTG
1 TGGCTG
32977180 ATTTTTTTCC
Statistics
Matches: 32, Mismatches: 8, Indels: 10
0.64 0.16 0.20
Matches are distributed among these distances:
17 1 0.03
18 9 0.28
19 3 0.09
20 3 0.09
21 15 0.47
22 1 0.03
ACGTcount: A:0.26, C:0.06, G:0.42, T:0.26
Consensus pattern (21 bp):
TGGCTGGATGAGGGTGAAGAA
Found at i:32977158 original size:39 final size:39
Alignment explanation
Indices: 32977104--32977183 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
32977094 TATGGAGGGC
32977104 TTGAGAAATTTGGCTGGATGAGGGTGAAGAATGGCTGAT
1 TTGAGAAATTTGGCTGGATGAGGGTGAAGAATGGCTGAT
32977143 TTGAGAAATTTGGCTGGATGAGGGTGAAGAATGGCTGAT
1 TTGAGAAATTTGGCTGGATGAGGGTGAAGAATGGCTGAT
32977182 TT
1 TT
32977184 TTTTCCTTCA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.28, C:0.05, G:0.38, T:0.30
Consensus pattern (39 bp):
TTGAGAAATTTGGCTGGATGAGGGTGAAGAATGGCTGAT
Found at i:32985458 original size:23 final size:23
Alignment explanation
Indices: 32985428--32985479 Score: 104
Period size: 23 Copynumber: 2.3 Consensus size: 23
32985418 AATGCATGCA
32985428 ACATGTTTGCAAAGTATTGGGTG
1 ACATGTTTGCAAAGTATTGGGTG
32985451 ACATGTTTGCAAAGTATTGGGTG
1 ACATGTTTGCAAAGTATTGGGTG
32985474 ACATGT
1 ACATGT
32985480 GAGATATGGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.27, C:0.10, G:0.29, T:0.35
Consensus pattern (23 bp):
ACATGTTTGCAAAGTATTGGGTG
Found at i:32994176 original size:40 final size:40
Alignment explanation
Indices: 32993979--32994169 Score: 260
Period size: 40 Copynumber: 4.8 Consensus size: 40
32993969 GGATTGATAC
* * *
32993979 CCGGGCTAAGTCCCGAAGGCATTTGTACTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATA-A
* * * *
32994019 CCGGGCTAAG-CCCGAAGGTAGTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAA
*
32994058 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAA
* *
32994098 CCAGGCTAAGTCCCAAAGGCATTTGTGCTAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAA
*
32994138 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT
32994170 AGCTATATCC
Statistics
Matches: 135, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
39 32 0.24
40 103 0.76
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAA
Found at i:33019182 original size:40 final size:40
Alignment explanation
Indices: 33019078--33019283 Score: 285
Period size: 40 Copynumber: 5.2 Consensus size: 40
33019068 GATTGATACT
** *
33019078 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGGGACTA-ATTT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATA-TC
* *
33019118 CGGGCTAAG-CCCGAAGGCAGTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATATC
* *
33019157 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATATC
*
33019197 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATATC
*
33019237 CGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTA-CTATATC
33019277 C-GGCTAA
1 CGGGCTAA
33019284 ACTCCGAAGG
Statistics
Matches: 153, Mismatches: 10, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 40 0.26
40 113 0.74
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATATC
Found at i:33019291 original size:119 final size:119
Alignment explanation
Indices: 33019078--33019293 Score: 296
Period size: 119 Copynumber: 1.8 Consensus size: 119
33019068 GATTGATACT
** *
33019078 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGGGACTAATTTCGGGCTAAGCCCGAAGGCAGTTGTG
1 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGGGACTAATACCGGGCTAAGCCCGAAGGCAGTTGAG
*
33019143 CGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAC
66 CGAGTTACTATATCCGGGCTAACTCCCGAAGGCATTTGTGCGAGTTACTATAAC
** *
33019197 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACT-ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGGGACTAAT-ACCGGGCTAAG-CCCGAAGGCAGTTG
*
33019261 AGCTAG-TAGCTATATCC-GGCTAAACT-CCGAAGG
64 AGCGAGTTA-CTATATCCGGGCT-AACTCCCGAAGG
33019294 TACTTGGTTT
Statistics
Matches: 85, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
118 2 0.02
119 55 0.65
120 28 0.33
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (119 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCTAGGGACTAATACCGGGCTAAGCCCGAAGGCAGTTGAG
CGAGTTACTATATCCGGGCTAACTCCCGAAGGCATTTGTGCGAGTTACTATAAC
Found at i:33022650 original size:15 final size:15
Alignment explanation
Indices: 33022630--33022666 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
33022620 CTAACTTGCC
*
33022630 GTGTCATCTGGCCAT
1 GTGTCACCTGGCCAT
33022645 GTGTCACCTGGCCAT
1 GTGTCACCTGGCCAT
*
33022660 GTTTCAC
1 GTGTCAC
33022667 ACAAGGCTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.14, C:0.30, G:0.24, T:0.32
Consensus pattern (15 bp):
GTGTCACCTGGCCAT
Found at i:33024261 original size:15 final size:16
Alignment explanation
Indices: 33024241--33024270 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
33024231 CGAATGAATT
33024241 TAACTCA-ATTCAATA
1 TAACTCATATTCAATA
33024256 TAACTCATATTCAAT
1 TAACTCATATTCAAT
33024271 TTAGTCCAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.43, C:0.20, G:0.00, T:0.37
Consensus pattern (16 bp):
TAACTCATATTCAATA
Found at i:33028164 original size:50 final size:50
Alignment explanation
Indices: 33028040--33028288 Score: 275
Period size: 50 Copynumber: 4.8 Consensus size: 50
33028030 GATAATAACA
* * ** * *
33028040 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
33028091 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
33028141 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
33028191 TGCCCATGCCATGTCCCAGACATGATCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
33028246 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
33028289 TTACCCAAAT
Statistics
Matches: 168, Mismatches: 23, Indels: 9
0.84 0.12 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.54
51 33 0.20
53 2 0.01
54 1 0.01
55 2 0.01
56 38 0.23
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:33028220 original size:100 final size:104
Alignment explanation
Indices: 33028039--33028288 Score: 348
Period size: 100 Copynumber: 2.4 Consensus size: 104
33028029 TGATAATAAC
**
33028039 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* * *
33028104 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGATCTTACAGGGGACCTCTCAATCTTAAGG
* *
33028141 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
33028204 TCCCAGACATGATCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGATCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
33028246 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
33028289 TTACCCAAAT
Statistics
Matches: 132, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
99 1 0.01
100 49 0.37
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGATCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:33028404 original size:13 final size:13
Alignment explanation
Indices: 33028383--33028414 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
33028373 GCTTGGATCA
*
33028383 TCATCAAATAAAT
1 TCATAAAATAAAT
33028396 TCATAAAATAAAT
1 TCATAAAATAAAT
33028409 TCATAA
1 TCATAA
33028415 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:33028661 original size:30 final size:30
Alignment explanation
Indices: 33028626--33028683 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
33028616 CCTCGACTCT
*
33028626 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
33028656 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
33028684 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:33029620 original size:28 final size:28
Alignment explanation
Indices: 33029557--33029738 Score: 276
Period size: 28 Copynumber: 6.5 Consensus size: 28
33029547 ATATTAAGTC
*
33029557 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
33029584 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
33029612 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
33029640 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
33029668 CGCACACTTAGTGCTATATAATTAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
33029696 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
33029725 CGCACACTTAGTGC
1 CGCACACTTAGTGC
33029739 CAATCTCATG
Statistics
Matches: 144, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
27 21 0.15
28 103 0.72
29 20 0.14
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:33031969 original size:67 final size:66
Alignment explanation
Indices: 33031769--33032205 Score: 303
Period size: 67 Copynumber: 6.5 Consensus size: 66
33031759 GTATGCTACT
* * * * * * *
33031769 ATAGCCAAGCTATAGTTTTACACATCATACCTCATGTTTAATGTCATGGA-GGACTCTCCACGTT
1 ATAGCCTAGCTATGGTCTTACACATCATA-CTCATGTTTAATGTCCT-GACAGACTCTCTATGTT
33031833 -TAC
64 GT-C
* * ** * * * *
33031836 ATAGTCAAGAAATGTTCTTACACATCATACCCTATGTTTAATG-CCTTCG-CAGACACTGTATGT
1 ATAGCCTAGCTATGGTCTTACACATCATACTC-ATGTTTAATGTCC-T-GACAGACTCTCTATGT
33031899 TGTC
63 TGTC
* * * *
33031903 ATAGCCTAGCTATAGTCTTACACATCATATCGCATGTTTAATGTCCTGACGGACTCTCTATATTG
1 ATAGCCTAGCTATGGTCTTACACATCATA-CTCATGTTTAATGTCCTGACAGACTCTCTATGTTG
33031968 TC
65 TC
* * ** * * * ***
33031970 ATCGCCGAAATATGGTTTTACACATCATACTTTATGTTTGATGTCCTGGTGGACTCTCTATGTTG
1 ATAGCCTAGCTATGGTCTTACACATCATAC-TCATGTTTAATGTCCTGACAGACTCTCTATGTTG
*
33032035 CC
65 TC
* * * * *
33032037 ATAGCCGAGCTATCGTCTTACACATCATACCTCATGTTTAATGTCCTAACAGATTCTCTTTGTTG
1 ATAGCCTAGCTATGGTCTTACACATCATA-CTCATGTTTAATGTCCTGACAGACTCTCTATGTTG
33032102 TC
65 TC
* * * * * * *
33032104 ATAG-ATGAGCTATGGTTTTACGCATCATACCCTATGTTTAATGTTCTGGCAAACTCTCTATGTT
1 ATAGCCT-AGCTATGGTCTTACACATCATACTC-ATGTTTAATGTCCTGACAGACTCTCTATGTT
33032168 -TCC
64 GT-C
* *
33032171 ATAG-TTGAGATATGGTCTTACACATCATACCTCAT
1 ATAGCCT-AGCTATGGTCTTACACATCATA-CTCAT
33032206 TACAGCCCAT
Statistics
Matches: 288, Mismatches: 69, Indels: 26
0.75 0.18 0.07
Matches are distributed among these distances:
66 8 0.03
67 272 0.94
68 8 0.03
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.36
Consensus pattern (66 bp):
ATAGCCTAGCTATGGTCTTACACATCATACTCATGTTTAATGTCCTGACAGACTCTCTATGTTGT
C
Found at i:33031991 original size:134 final size:134
Alignment explanation
Indices: 33031769--33032205 Score: 425
Period size: 134 Copynumber: 3.3 Consensus size: 134
33031759 GTATGCTACT
* * * *
33031769 ATAGCCAAGCTATAGTTTTACACATCATACCTCATGTTTAATGTCATGGA-GGACTCTCCACGTT
1 ATAGCCAAGCTATAGTCTTACACATCATACCTCATGTTTAATGTCCT-GACGGACTCTCTATGTT
* * *
33031833 -TACATAGTC-AAGAAAT-GTTCTTACACATCATACCCTATGTTTAATG-CCTTCGCAGACACTG
65 GT-CATAGACGAA-ATATGGTT-TTACACATCATACCCTATGTTTAATGTCC-TCGCAGACACTC
*
33031894 TATGTTGTC
126 TATGTTGCC
* * * *
33031903 ATAGCCTAGCTATAGTCTTACACATCATATCGCATGTTTAATGTCCTGACGGACTCTCTATATTG
1 ATAGCCAAGCTATAGTCTTACACATCATACCTCATGTTTAATGTCCTGACGGACTCTCTATGTTG
* * ** * * ** *
33031968 TCATCGCCGAAATATGGTTTTACACATCATACTTTATGTTTGATGTCCTGGTGGACTCTCTATGT
66 TCATAGACGAAATATGGTTTTACACATCATACCCTATGTTTAATGTCCTCGCAGACACTCTATGT
33032033 TGCC
131 TGCC
* * * * * *
33032037 ATAGCCGAGCTATCGTCTTACACATCATACCTCATGTTTAATGTCCTAACAGATTCTCTTTGTTG
1 ATAGCCAAGCTATAGTCTTACACATCATACCTCATGTTTAATGTCCTGACGGACTCTCTATGTTG
* ** * * * * *
33032102 TCATAGATGAGCTATGGTTTTACGCATCATACCCTATGTTTAATGTTCTGGCAAACTCTCTATGT
66 TCATAGACGAAATATGGTTTTACACATCATACCCTATGTTTAATGTCCTCGCAGACACTCTATGT
*
33032167 TTCC
131 TGCC
*** * *
33032171 ATAGTTGAGATATGGTCTTACACATCATACCTCAT
1 ATAGCCAAGCTATAGTCTTACACATCATACCTCAT
33032206 TACAGCCCAT
Statistics
Matches: 251, Mismatches: 47, Indels: 10
0.81 0.15 0.03
Matches are distributed among these distances:
133 2 0.01
134 241 0.96
135 8 0.03
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.36
Consensus pattern (134 bp):
ATAGCCAAGCTATAGTCTTACACATCATACCTCATGTTTAATGTCCTGACGGACTCTCTATGTTG
TCATAGACGAAATATGGTTTTACACATCATACCCTATGTTTAATGTCCTCGCAGACACTCTATGT
TGCC
Found at i:33032132 original size:201 final size:201
Alignment explanation
Indices: 33031783--33032205 Score: 444
Period size: 201 Copynumber: 2.1 Consensus size: 201
33031773 CCAAGCTATA
* *
33031783 GTTTTACACATCATACCTCATGTTTAATGTCATGGAGGACTCTCCACGTTTACATAGTCAAGAAA
1 GTTTTACACATCATACCTCATGTTTAATGTCATGGAGGACTCTCCACGTTGACATAGCCAAGAAA
** * *
33031848 TGTTCTTACACATCATACCCTATGTTTAATGCCTTCGCAGACACTGTATGTTGTCATAGCCTAGC
66 TGTTCTTACACATCATACCCTATGTTTAATGCCTTAACAGACACTCTATGTTGTCATAGCATAGC
* ** *
33031913 TATAGTCTTACACATCATATCGC-ATGTTTAATGTCCTGACGGACTCTCTATATTGT-CATCGCC
131 TATAGTCTTACACATCATA-CCCTATGTTTAATGTCCTGACAAACTCTCTATATT-TCCATAGCC
33031976 GAAATATG
194 GAAATATG
* * * * * * * * * **
33031984 GTTTTACACATCATACTTTATGTTTGATGTCCTGGTGGACTCTCTATGTTGCCATAGCCGAGCTA
1 GTTTTACACATCATACCTCATGTTTAATGTCATGGAGGACTCTCCACGTTGACATAGCCAAGAAA
** *
33032049 TCG-TCTTACACATCATA-CCTCATGTTTAATGTCC-TAACAGATTCTCTTTGTTGTCATAG-AT
66 T-GTTCTTACACATCATACCCT-ATGTTTAATG-CCTTAACAGACACTCTATGTTGTCATAGCAT
* * * * * *
33032110 GAGCTATGGTTTTACGCATCATACCCTATGTTTAATGTTCTGGCAAACTCTCTATGTTTCCATAG
128 -AGCTATAGTCTTACACATCATACCCTATGTTTAATGTCCTGACAAACTCTCTATATTTCCATAG
** *
33032175 TTGAGATATG
192 CCGAAATATG
*
33032185 GTCTTACACATCATACCTCAT
1 GTTTTACACATCATACCTCAT
33032206 TACAGCCCAT
Statistics
Matches: 180, Mismatches: 36, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
200 7 0.04
201 170 0.94
202 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.37
Consensus pattern (201 bp):
GTTTTACACATCATACCTCATGTTTAATGTCATGGAGGACTCTCCACGTTGACATAGCCAAGAAA
TGTTCTTACACATCATACCCTATGTTTAATGCCTTAACAGACACTCTATGTTGTCATAGCATAGC
TATAGTCTTACACATCATACCCTATGTTTAATGTCCTGACAAACTCTCTATATTTCCATAGCCGA
AATATG
Found at i:33050434 original size:11 final size:10
Alignment explanation
Indices: 33050408--33050459 Score: 50
Period size: 10 Copynumber: 4.8 Consensus size: 10
33050398 CAAAATAGTG
*
33050408 AAAATAAAAT
1 AAAATAAAAC
33050418 AAAATAATAAC
1 AAAATAA-AAC
*
33050429 AAAATAGAAAAA
1 AAAAT--AAAAC
33050441 AAAATAAAAC
1 AAAATAAAAC
33050451 AATAATAAA
1 AA-AATAAA
33050460 GTAGATTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
10 13 0.37
11 13 0.37
12 7 0.20
13 2 0.06
ACGTcount: A:0.79, C:0.04, G:0.02, T:0.15
Consensus pattern (10 bp):
AAAATAAAAC
Found at i:33050438 original size:28 final size:28
Alignment explanation
Indices: 33050398--33050464 Score: 80
Period size: 28 Copynumber: 2.3 Consensus size: 28
33050388 GAAATGGTAG
* *
33050398 CAAAATAGTGAAAATAAAATAAAATAATAA
1 CAAAATA--GAAAAAAAAATAAAACAATAA
33050428 CAAAATAGAAAAAAAAATAAAACAATAA
1 CAAAATAGAAAAAAAAATAAAACAATAA
* *
33050456 TAAAGTAGA
1 CAAAATAGA
33050465 TTTTTGTTGC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 26 0.79
30 7 0.21
ACGTcount: A:0.72, C:0.04, G:0.07, T:0.16
Consensus pattern (28 bp):
CAAAATAGAAAAAAAAATAAAACAATAA
Found at i:33053527 original size:49 final size:49
Alignment explanation
Indices: 33053454--33053628 Score: 152
Period size: 49 Copynumber: 3.7 Consensus size: 49
33053444 GGTAAAGTGT
* * * *
33053454 CGATGCCATATCCTAGACATGGTCTTACACTGGCTATTATC-T-TCG-AGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCA-CATATCGTA--C
* * *
33053503 CGATGCCATGTCCCAGACACGGTCTTACACTAACTCTCACATAATCGTAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCACAT-ATCGTAC
*
33053553 CGATGCCATGTCCCAGACATGGTCTTACACTGAC-A-CAC--CTCGTAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCACATATCGTA-C
* *
33053599 TGATG-CATGTCCCAGACAT-GTCTTATACTG
1 CGATGCCATGTCCCAGACATGGTCTTACACTG
33053629 GCTTATGTCC
Statistics
Matches: 108, Mismatches: 13, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
44 10 0.09
45 19 0.18
46 5 0.05
48 4 0.04
49 33 0.31
50 33 0.31
51 3 0.03
52 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCACATATCGTAC
Found at i:33053767 original size:46 final size:48
Alignment explanation
Indices: 33053454--33053772 Score: 178
Period size: 46 Copynumber: 6.7 Consensus size: 48
33053444 GGTAAAGTGT
* * * * ** *
33053454 CGATGCCATATCCTAGACATGGTCTTACACTGGCTATTATCTTCGAGGC
1 CGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCTCATAATCGTGGC
* ** *
33053503 CGATGCCATGTCCCAGACACGGTCTTACACTAACTCTCACATAATCGT-AC
1 CGATGCCATGTCCCAGACA-TGTCTTACACTGGCTCT--CATAATCGTGGC
* * ** *
33053553 CGATGCCATGTCCCAGACATGGTCTTACACT-G-ACACA-CCTCGTAGC
1 CGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCTCATAATCGTGGC
* * * **
33053599 TGATG-CATGTCCCAGACATGTCTTATACTGGCT-T-AT-GTCCCAAGGC
1 CGATGCCATGTCCCAGACATGTCTTACACTGGCTCTCATAAT--CGTGGC
* * * * * * *
33053645 TGATG-CATGTCCCAAACATGTCTTACACTCGCACTCGT-CTCAAT-GC
1 CGATGCCATGTCCCAGACATGTCTTACACTGGCTCTCATAATC-GTGGC
* * *
33053691 CAATGCCATGTCCCAAATATGGTCTTACACTGGCTCTCATAAT-GTGGC
1 CGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCTCATAATCGTGGC
*
33053739 CGATG-CATGTCCCAGACATGTCTTACACTAGCTC
1 CGATGCCATGTCCCAGACATGTCTTACACTGGCTC
33053773 ATACAAATGA
Statistics
Matches: 208, Mismatches: 45, Indels: 37
0.72 0.16 0.13
Matches are distributed among these distances:
44 11 0.05
45 19 0.09
46 59 0.28
47 28 0.13
48 25 0.12
49 31 0.15
50 30 0.14
51 5 0.02
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.27
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGTCTTACACTGGCTCTCATAATCGTGGC
Found at i:33054375 original size:35 final size:35
Alignment explanation
Indices: 33054329--33054400 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
33054319 GCTAACAGCT
33054329 TTCACAAAAGTTGTTTATAAGACAACCAAGACTCA
1 TTCACAAAAGTTGTTTATAAGACAACCAAGACTCA
33054364 TTCACAAAAGTTGTTTATAAGACAACCAAGACTCA
1 TTCACAAAAGTTGTTTATAAGACAACCAAGACTCA
33054399 TT
1 TT
33054401 TTCTTCCATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.42, C:0.19, G:0.11, T:0.28
Consensus pattern (35 bp):
TTCACAAAAGTTGTTTATAAGACAACCAAGACTCA
Found at i:33063049 original size:27 final size:27
Alignment explanation
Indices: 33062982--33063050 Score: 75
Period size: 27 Copynumber: 2.6 Consensus size: 27
33062972 ACCGTTTCTC
* *
33062982 TCAGTGTTTTCCATATGCACTATTCTT
1 TCAGTGTTTACCATATGCACTATTCCT
** ** *
33063009 TCAAAGTTCGCCATATGTACTATTCCT
1 TCAGTGTTTACCATATGCACTATTCCT
33063036 TCAGTGTTTACCATA
1 TCAGTGTTTACCATA
33063051 CCTTCTAGTC
Statistics
Matches: 32, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.23, C:0.23, G:0.12, T:0.42
Consensus pattern (27 bp):
TCAGTGTTTACCATATGCACTATTCCT
Found at i:33063305 original size:27 final size:27
Alignment explanation
Indices: 33063244--33063305 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
33063234 CCACAAAGTT
* *
33063244 TTCCATTCCATAGATTTCCAGAAAGGC
1 TTCCATTTCATAGATTTCCAAAAAGGC
*
33063271 TTCCATTTCATATATTTCCAAAAAGGC
1 TTCCATTTCATAGATTTCCAAAAAGGC
33063298 TTCCATTT
1 TTCCATTT
33063306 TTTTAGCACG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.29, C:0.24, G:0.10, T:0.37
Consensus pattern (27 bp):
TTCCATTTCATAGATTTCCAAAAAGGC
Found at i:33064868 original size:29 final size:28
Alignment explanation
Indices: 33064834--33064888 Score: 83
Period size: 29 Copynumber: 1.9 Consensus size: 28
33064824 AGTTATACCA
*
33064834 ATTTGGCTTCGGGCCAAGCATATCAGTTG
1 ATTTGGCTTCAGGCCAAG-ATATCAGTTG
*
33064863 ATTTGGCTTCAGGCCATGATATCAGT
1 ATTTGGCTTCAGGCCAAGATATCAGT
33064889 ACTTTAGAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 8 0.33
29 16 0.67
ACGTcount: A:0.22, C:0.20, G:0.25, T:0.33
Consensus pattern (28 bp):
ATTTGGCTTCAGGCCAAGATATCAGTTG
Found at i:33078572 original size:286 final size:286
Alignment explanation
Indices: 33078060--33078632 Score: 1146
Period size: 286 Copynumber: 2.0 Consensus size: 286
33078050 CTTATAAGGG
33078060 ACAATGTGAATGTGTTGAATGAATTTTGATTATGAATGCATATATGTATGATTTATGTTGTGATG
1 ACAATGTGAATGTGTTGAATGAATTTTGATTATGAATGCATATATGTATGATTTATGTTGTGATG
33078125 GATCGGTAATGCCTCGTAACCCTATTTTGACTATGGATACAGGTTAGAGGTGTTACAATGAGGCT
66 GATCGGTAATGCCTCGTAACCCTATTTTGACTATGGATACAGGTTAGAGGTGTTACAATGAGGCT
33078190 ATGAGAAAACAAAACCCTAACCTCTTTGTTGGTAAGTTTTTCGGGGACGAAAATCCCTAAGGGGA
131 ATGAGAAAACAAAACCCTAACCTCTTTGTTGGTAAGTTTTTCGGGGACGAAAATCCCTAAGGGGA
33078255 GAGAGTTGTAATAGCCCATTTTTAGTCAAATTGAAACAGTGGTTTCAGGACCACAAATCTAAAGT
196 GAGAGTTGTAATAGCCCATTTTTAGTCAAATTGAAACAGTGGTTTCAGGACCACAAATCTAAAGT
33078320 CAAAATAATTATTTTATTATTAATTT
261 CAAAATAATTATTTTATTATTAATTT
33078346 ACAATGTGAATGTGTTGAATGAATTTTGATTATGAATGCATATATGTATGATTTATGTTGTGATG
1 ACAATGTGAATGTGTTGAATGAATTTTGATTATGAATGCATATATGTATGATTTATGTTGTGATG
33078411 GATCGGTAATGCCTCGTAACCCTATTTTGACTATGGATACAGGTTAGAGGTGTTACAATGAGGCT
66 GATCGGTAATGCCTCGTAACCCTATTTTGACTATGGATACAGGTTAGAGGTGTTACAATGAGGCT
33078476 ATGAGAAAACAAAACCCTAACCTCTTTGTTGGTAAGTTTTTCGGGGACGAAAATCCCTAAGGGGA
131 ATGAGAAAACAAAACCCTAACCTCTTTGTTGGTAAGTTTTTCGGGGACGAAAATCCCTAAGGGGA
33078541 GAGAGTTGTAATAGCCCATTTTTAGTCAAATTGAAACAGTGGTTTCAGGACCACAAATCTAAAGT
196 GAGAGTTGTAATAGCCCATTTTTAGTCAAATTGAAACAGTGGTTTCAGGACCACAAATCTAAAGT
33078606 CAAAATAATTATTTTATTATTAATTT
261 CAAAATAATTATTTTATTATTAATTT
33078632 A
1 A
33078633 ATGTTTACGA
Statistics
Matches: 287, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
286 287 1.00
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.34
Consensus pattern (286 bp):
ACAATGTGAATGTGTTGAATGAATTTTGATTATGAATGCATATATGTATGATTTATGTTGTGATG
GATCGGTAATGCCTCGTAACCCTATTTTGACTATGGATACAGGTTAGAGGTGTTACAATGAGGCT
ATGAGAAAACAAAACCCTAACCTCTTTGTTGGTAAGTTTTTCGGGGACGAAAATCCCTAAGGGGA
GAGAGTTGTAATAGCCCATTTTTAGTCAAATTGAAACAGTGGTTTCAGGACCACAAATCTAAAGT
CAAAATAATTATTTTATTATTAATTT
Found at i:33083919 original size:45 final size:45
Alignment explanation
Indices: 33083821--33083993 Score: 192
Period size: 45 Copynumber: 3.9 Consensus size: 45
33083811 TTTTCTCAAA
* * * * *
33083821 TCACCGGCATT-TCGCCTGCTAGGATC-GAGGCCCGATTA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATC
* * *
33083864 TCATCAGCATTATAGCCTGCTAGGCTTGAAA-GCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGC-TCAAAGGCCCGAATAGTATC
* * *
33083909 TCACCGGCATTATAGCCTACTAGGCCCAAAGGCCCGAATAGTGTC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
33083954 TCACCGGCATAATAGCCTGCTAGGCTCAAAGGCCCGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
33083994 TAATACCAGC
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
43 9 0.08
44 14 0.13
45 83 0.77
46 2 0.02
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:33084033 original size:38 final size:38
Alignment explanation
Indices: 33083986--33084194 Score: 310
Period size: 38 Copynumber: 5.5 Consensus size: 38
33083976 GGCTCAAAGG
* ** * *
33083986 CCCGAATATAATACCAGCATTAGGCCTGTGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
33084024 CCCGGATATAATACCAGCACGAAGCCTGCGGGAATTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
33084062 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
33084100 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* * *
33084138 CCCAGATATATTACCAACACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
33084176 CCCGGATATAATTCCAGCA
1 CCCGGATATAATACCAGCA
33084195 TATTGCCTAC
Statistics
Matches: 157, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 157 1.00
ACGTcount: A:0.32, C:0.26, G:0.22, T:0.21
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:33084597 original size:43 final size:43
Alignment explanation
Indices: 33084491--33084617 Score: 164
Period size: 43 Copynumber: 2.9 Consensus size: 43
33084481 ATAACATTTC
* *
33084491 ATTTCACCGGCATTATAGCCTTCTAGGCTCAAAGGCTCGAATAAT
1 ATTTCACCGGCATTATAGCCTACTAGGCTCAAA-GCCCG-ATAAT
* * *
33084536 ATTTCACCGGCATCATAGCCTACTAAGCTCAAAGCCCGATATT
1 ATTTCACCGGCATTATAGCCTACTAGGCTCAAAGCCCGATAAT
* * *
33084579 ATTTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGA
1 ATTTCACCGGCATTATAGCCTACTAGGCTCAAAGCCCGA
33084618 ATATCACATT
Statistics
Matches: 72, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
43 38 0.53
44 4 0.06
45 30 0.42
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (43 bp):
ATTTCACCGGCATTATAGCCTACTAGGCTCAAAGCCCGATAAT
Found at i:33090045 original size:45 final size:45
Alignment explanation
Indices: 33090014--33090138 Score: 178
Period size: 45 Copynumber: 2.8 Consensus size: 45
33090004 TCATTTCATT
* *
33090014 GGCATTATAGCCTGCCAGGCTCGAAAGCCCGAATAGTATCTCACC
1 GGCATTATAGCCTGCCAGGCCCAAAAGCCCGAATAGTATCTCACC
* *
33090059 GGCATTATAGCCTGCTAGGCCCAAAAGCCCGAATAGTGTCTCACC
1 GGCATTATAGCCTGCCAGGCCCAAAAGCCCGAATAGTATCTCACC
* * * *
33090104 GGCATAATAGCCTGCTAGGCTCAAAGGCCCGAATA
1 GGCATTATAGCCTGCCAGGCCCAAAAGCCCGAATA
33090139 TAATACCAAT
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 73 1.00
ACGTcount: A:0.28, C:0.30, G:0.23, T:0.19
Consensus pattern (45 bp):
GGCATTATAGCCTGCCAGGCCCAAAAGCCCGAATAGTATCTCACC
Found at i:33090179 original size:38 final size:38
Alignment explanation
Indices: 33090131--33090301 Score: 227
Period size: 38 Copynumber: 4.5 Consensus size: 38
33090121 GGCTCAAAGG
* ** * *
33090131 CCCGAATATAATACCAATACTAGGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
33090169 CCCAGATATAATACCAGCACGAAGCCTGCGGGAATTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
33090207 CCCGGATA-AATTACCAGCACAAAGCCTGCGGGATTTAA
1 CCCGGATATAA-TACCAGCACGAAGCCTGCGGGATTTAA
* *
33090245 CCCGAATATATTACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
33090283 CCCGGATATAATTCCAGCA
1 CCCGGATATAATACCAGCA
33090302 TATAGCCTAC
Statistics
Matches: 115, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
37 2 0.02
38 112 0.97
39 1 0.01
ACGTcount: A:0.34, C:0.26, G:0.20, T:0.20
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:33090309 original size:38 final size:39
Alignment explanation
Indices: 33090154--33090301 Score: 232
Period size: 38 Copynumber: 3.9 Consensus size: 39
33090144 CCAATACTAG
*
33090154 GCCTGCGGGATTTAACCCAGATATAA-TACCAGCACGAA
1 GCCTGCGGGATTTAACCCGGATATAATTACCAGCACGAA
* *
33090192 GCCTGCGGGAATTAACCCGGATA-AATTACCAGCACAAA
1 GCCTGCGGGATTTAACCCGGATATAATTACCAGCACGAA
*
33090230 GCCTGCGGGATTTAACCCGAATAT-ATTACCAGCACGAA
1 GCCTGCGGGATTTAACCCGGATATAATTACCAGCACGAA
33090268 GCCTGCGGGATTTAACCCGGATATAATT-CCAGCA
1 GCCTGCGGGATTTAACCCGGATATAATTACCAGCA
33090302 TATAGCCTAC
Statistics
Matches: 100, Mismatches: 7, Indels: 6
0.88 0.06 0.05
Matches are distributed among these distances:
37 2 0.02
38 95 0.95
39 3 0.03
ACGTcount: A:0.32, C:0.26, G:0.22, T:0.20
Consensus pattern (39 bp):
GCCTGCGGGATTTAACCCGGATATAATTACCAGCACGAA
Found at i:33090706 original size:43 final size:46
Alignment explanation
Indices: 33090598--33090708 Score: 149
Period size: 45 Copynumber: 2.5 Consensus size: 46
33090588 ACATATCATT
* ** *
33090598 TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCTCGAATAA
1 TCATTTCACCGGCATTATAGCCTACTAAACTCAAAGGCCCGAATAA
*
33090644 T-ATTTCACCGGCATCATAGCCTACTAAACTCAAA-GCCCG-AT-A
1 TCATTTCACCGGCATTATAGCCTACTAAACTCAAAGGCCCGAATAA
33090686 TCATTTCACCGGCATTATAGCCT
1 TCATTTCACCGGCATTATAGCCT
33090709 GCTAGGCCCG
Statistics
Matches: 58, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
42 2 0.03
43 22 0.38
44 4 0.07
45 29 0.50
46 1 0.02
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (46 bp):
TCATTTCACCGGCATTATAGCCTACTAAACTCAAAGGCCCGAATAA
Found at i:33090723 original size:43 final size:44
Alignment explanation
Indices: 33090598--33090732 Score: 175
Period size: 43 Copynumber: 3.1 Consensus size: 44
33090588 ACATATCATT
*
33090598 TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCTCGAATAA
1 TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAA-GCCCGAAT-A
* * **
33090644 T-ATTTCACCGGCATCATAGCCTACTAAACTCAAAGCCCG-ATA
1 TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGAATA
* *
33090686 TCATTTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGAATA
1 TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGAATA
33090730 TCA
1 TCA
33090733 CATTTCGATA
Statistics
Matches: 76, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
42 2 0.03
43 34 0.45
44 10 0.13
45 29 0.38
46 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (44 bp):
TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGAATA
Found at i:33092727 original size:47 final size:47
Alignment explanation
Indices: 33092664--33093168 Score: 803
Period size: 47 Copynumber: 10.6 Consensus size: 47
33092654 CCCTTCGGGA
* * * * *
33092664 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
33092711 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
33092758 CTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
33092805 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
33092854 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33092901 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33092948 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
33092997 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33093046 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
33093093 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33093142 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
33093169 ACCAACCCTT
Statistics
Matches: 429, Mismatches: 23, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
47 245 0.57
49 184 0.43
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:33092861 original size:96 final size:96
Alignment explanation
Indices: 33092664--33093168 Score: 847
Period size: 96 Copynumber: 5.3 Consensus size: 96
33092654 CCCTTCGGGA
* * * * * * *
33092664 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCATTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* *
33092727 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATTGGCCATTCGGC
*
33092758 CTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
33092823 ACTTTCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATTGGCCATTCGGC
*
33092854 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* *
33092917 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATTGGCCATTCGGC
33092948 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
33093013 ACACTTTCACATTCATCACATTGGCCATTCGGC
64 ACACTTTCACATTCATCACATTGGCCATTCGGC
33093046 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
33093111 ACTTTCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATTGGCCATTCGGC
33093142 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
33093169 ACCAACCCTT
Statistics
Matches: 388, Mismatches: 17, Indels: 10
0.93 0.04 0.02
Matches are distributed among these distances:
94 92 0.24
96 251 0.65
98 45 0.12
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:33092933 original size:143 final size:143
Alignment explanation
Indices: 33092664--33093168 Score: 888
Period size: 143 Copynumber: 3.5 Consensus size: 143
33092654 CCCTTCGGGA
* * * *
33092664 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCATTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
33092727 ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
33092792 TCGGCCATTAGGC
131 TCGGCCATTAGGC
33092805 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
33092870 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
33092935 TCGGCCATTAGGC
131 TCGGCCATTAGGC
* *
33092948 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATAT
* *
33093013 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCA
64 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
33093078 CATCGGCCATTAGGC
129 CATCGGCCATTAGGC
33093093 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
33093158 ACTTTCACATT
66 ACTTTCACATT
33093169 ACCAACCCTT
Statistics
Matches: 347, Mismatches: 13, Indels: 6
0.95 0.04 0.02
Matches are distributed among these distances:
141 10 0.03
142 1 0.00
143 198 0.57
145 138 0.40
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (143 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:33093498 original size:40 final size:40
Alignment explanation
Indices: 33093393--33093535 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
33093383 GCTACTCGTT
*
33093393 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
33093433 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
33093473 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
33093514 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
33093536 AGACATCATT
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
39 3 0.03
40 74 0.82
41 13 0.14
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:33100718 original size:5 final size:5
Alignment explanation
Indices: 33100708--33100779 Score: 78
Period size: 5 Copynumber: 14.0 Consensus size: 5
33100698 ATAGAAGATA
33100708 TTATT TTATT TTATT TTA-T TTAGTT TTATTAT TTATT TT-TAT TTATT
1 TTATT TTATT TTATT TTATT TTA-TT TTA-T-T TTATT TTAT-T TTATT
33100755 TTA-T TTATT TTATTT TTATT TTATT
1 TTATT TTATT TTA-TT TTATT TTATT
33100780 AATTTAGTTT
Statistics
Matches: 59, Mismatches: 1, Indels: 14
0.80 0.01 0.19
Matches are distributed among these distances:
4 9 0.15
5 34 0.58
6 12 0.20
7 4 0.07
ACGTcount: A:0.21, C:0.00, G:0.01, T:0.78
Consensus pattern (5 bp):
TTATT
Found at i:33100739 original size:13 final size:12
Alignment explanation
Indices: 33100706--33100791 Score: 76
Period size: 11 Copynumber: 7.2 Consensus size: 12
33100696 AAATAGAAGA
33100706 TATTATTTTATTT
1 TATTA-TTTATTT
33100719 TATTTTATTTAGTTT
1 TA--TTATTTA-TTT
33100734 TATTATTTA-TT
1 TATTATTTATTT
33100745 T-TTATTTA--T
1 TATTATTTATTT
33100754 T-TTATTTATTT
1 TATTATTTATTT
33100765 TATT-TTTATTT
1 TATTATTTATTT
33100776 TATTAATTTAGTTT
1 TATT-ATTTA-TTT
33100790 TA
1 TA
33100792 GCCTATTTTT
Statistics
Matches: 64, Mismatches: 0, Indels: 17
0.79 0.00 0.21
Matches are distributed among these distances:
9 9 0.14
10 7 0.11
11 16 0.25
12 2 0.03
13 13 0.20
14 9 0.14
15 8 0.12
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.74
Consensus pattern (12 bp):
TATTATTTATTT
Found at i:33100747 original size:28 final size:27
Alignment explanation
Indices: 33100706--33100779 Score: 86
Period size: 28 Copynumber: 2.8 Consensus size: 27
33100696 AAATAGAAGA
33100706 TATTATTT-TATTTTATTTTA-TTTAGTTT
1 TATTATTTAT-TTTTATTTTATTTTA--TT
33100734 TATTATTTATTTTTA-TTTATTTTATT
1 TATTATTTATTTTTATTTTATTTTATT
33100760 TA-T-TTTATTTTTATTTTATT
1 TATTATTTATTTTTATTTTATT
33100780 AATTTAGTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 9
0.83 0.00 0.17
Matches are distributed among these distances:
24 10 0.23
25 7 0.16
26 4 0.09
27 4 0.09
28 17 0.40
29 1 0.02
ACGTcount: A:0.22, C:0.00, G:0.01, T:0.77
Consensus pattern (27 bp):
TATTATTTATTTTTATTTTATTTTATT
Found at i:33100785 original size:28 final size:31
Alignment explanation
Indices: 33100708--33100784 Score: 113
Period size: 32 Copynumber: 2.5 Consensus size: 31
33100698 ATAGAAGATA
33100708 TTATTTTATTTTATTTTATTTAGTTTTATTAT
1 TTATTTTA-TTTATTTTATTTAGTTTTATTAT
33100740 TTATTTTTATTTATTTTATTTA-TTTTATT-T
1 TTA-TTTTATTTATTTTATTTAGTTTTATTAT
*
33100770 TTATTTTATTAATTT
1 TTATTTTATTTATTT
33100785 AGTTTTAGCC
Statistics
Matches: 43, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
29 11 0.26
30 4 0.09
31 7 0.16
32 16 0.37
33 5 0.12
ACGTcount: A:0.22, C:0.00, G:0.01, T:0.77
Consensus pattern (31 bp):
TTATTTTATTTATTTTATTTAGTTTTATTAT
Found at i:33100790 original size:19 final size:20
Alignment explanation
Indices: 33100711--33100791 Score: 82
Period size: 19 Copynumber: 4.2 Consensus size: 20
33100701 GAAGATATTA
*
33100711 TTTTATTTTATTTTATTTAG
1 TTTTATTTTATTTAATTTAG
*
33100731 TTTTA--TTATTT-ATTT-T
1 TTTTATTTTATTTAATTTAG
* *
33100747 TATTTATTTTATTTATTTTAT
1 T-TTTATTTTATTTAATTTAG
33100768 TTTTATTTTA-TTAATTTAG
1 TTTTATTTTATTTAATTTAG
33100787 TTTTA
1 TTTTA
33100792 GCCTATTTTT
Statistics
Matches: 52, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
16 1 0.02
17 8 0.15
18 6 0.12
19 18 0.35
20 17 0.33
21 2 0.04
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.75
Consensus pattern (20 bp):
TTTTATTTTATTTAATTTAG
Found at i:33110424 original size:4 final size:4
Alignment explanation
Indices: 33110409--33110455 Score: 58
Period size: 4 Copynumber: 10.8 Consensus size: 4
33110399 CTACACAAAA
33110409 AAAT ATAAT AAAT AAAAT AAAT AAAT AATAT ATAAT AAAT AAAT AAA
1 AAAT A-AAT AAAT -AAAT AAAT AAAT AA-AT A-AAT AAAT AAAT AAA
33110456 ATTTAAGACT
Statistics
Matches: 39, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
4 24 0.62
5 14 0.36
6 1 0.03
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (4 bp):
AAAT
Found at i:33110445 original size:18 final size:17
Alignment explanation
Indices: 33110405--33110455 Score: 68
Period size: 18 Copynumber: 2.9 Consensus size: 17
33110395 GCCTCTACAC
33110405 AAAA-AAATATAATAAAT
1 AAAATAAATA-AATAAAT
33110422 AAAATAAATAAATAATAT
1 AAAATAAATAAATAA-AT
*
33110440 ATAATAAATAAATAAA
1 AAAATAAATAAATAAA
33110456 ATTTAAGACT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
17 10 0.32
18 21 0.68
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (17 bp):
AAAATAAATAAATAAAT
Found at i:33115775 original size:44 final size:42
Alignment explanation
Indices: 33115713--33115866 Score: 145
Period size: 43 Copynumber: 3.6 Consensus size: 42
33115703 TGTGTTTTCG
* *
33115713 TGTAAGACCACATCTGGGACGTTGGCATCGACTTATGATTTACG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGA-TT-TGATTTACA
* * *
33115757 TGTAAGACCACGTTTGGGACGATGGTATCGTATTTGATTT-CA
1 TGTAAGACCACGTCTGGGACGTTGGCATCG-ATTTGATTTACA
* *
33115799 TGTAAGACC-CTATCTGGGACAG-TGGCATCAATATTTGA-TTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATC--GATTTGATTTACA
*
33115842 TGTAAGACCACGTCTGGGACATTGG
1 TGTAAGACCACGTCTGGGACGTTGG
33115867 TATTGTACGA
Statistics
Matches: 91, Mismatches: 11, Indels: 17
0.76 0.09 0.14
Matches are distributed among these distances:
41 1 0.01
42 25 0.27
43 35 0.38
44 29 0.32
45 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATTTGATTTACA
Found at i:33125309 original size:27 final size:28
Alignment explanation
Indices: 33125256--33125309 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 28
33125246 CAAAAATTAA
** *
33125256 AAATATTTATAAAAATTTTAATTTTTAT
1 AAATATTTATAAAAATTACAATATTTAT
*
33125284 AAATCTTT-TAAAAATTACAATATTTA
1 AAATATTTATAAAAATTACAATATTTA
33125310 AAAAAGCAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
27 15 0.68
28 7 0.32
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (28 bp):
AAATATTTATAAAAATTACAATATTTAT
Found at i:33127019 original size:3 final size:3
Alignment explanation
Indices: 33127011--33127038 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
33127001 TTTGGGACCA
33127011 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
33127039 TACCAACACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:33134886 original size:24 final size:24
Alignment explanation
Indices: 33134827--33134900 Score: 94
Period size: 24 Copynumber: 3.0 Consensus size: 24
33134817 TCGAACTCAC
* *
33134827 CTCAGCTCGTATGAGCTTACCGATAT
1 CTCAGCTCGTAAGAGCTTACTG-T-T
*
33134853 ATCAGCTCGTAAGAGCTTACTGTT
1 CTCAGCTCGTAAGAGCTTACTGTT
*
33134877 CTCAGCTCGTCAGAGCTTACTGTT
1 CTCAGCTCGTAAGAGCTTACTGTT
33134901 TCAACTCAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
24 23 0.53
25 1 0.02
26 19 0.44
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (24 bp):
CTCAGCTCGTAAGAGCTTACTGTT
Found at i:33134918 original size:23 final size:24
Alignment explanation
Indices: 33134864--33134918 Score: 69
Period size: 23 Copynumber: 2.3 Consensus size: 24
33134854 TCAGCTCGTA
* *
33134864 AGAGCTTACTGTTCTCAGCTCGTC
1 AGAGCTTACTGTTCTCAACTCATC
33134888 AGAGCTTACTGTT-TCAACTCAAT-
1 AGAGCTTACTGTTCTCAACTC-ATC
33134911 AGAGCTTA
1 AGAGCTTA
33134919 TTGTCCATCA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 14 0.50
24 14 0.50
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.33
Consensus pattern (24 bp):
AGAGCTTACTGTTCTCAACTCATC
Found at i:33142601 original size:24 final size:23
Alignment explanation
Indices: 33142565--33142642 Score: 77
Period size: 23 Copynumber: 3.3 Consensus size: 23
33142555 CCGATATATA
33142565 AGCTC-ATATGAGCTTACTGTTCTC
1 AGCTCAATA-GAGCTTACTGTT-TC
** * *
33142589 AGCTCGTTAGAGCTTACTATTTT
1 AGCTCAATAGAGCTTACTGTTTC
33142612 AGCTCAATAGAGCTTACTGTCTATC
1 AGCTCAATAGAGCTTACTGT-T-TC
33142637 AGCTCA
1 AGCTCA
33142643 GGAGGAGCTT
Statistics
Matches: 44, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
23 18 0.41
24 17 0.39
25 9 0.20
ACGTcount: A:0.24, C:0.23, G:0.17, T:0.36
Consensus pattern (23 bp):
AGCTCAATAGAGCTTACTGTTTC
Found at i:33147565 original size:16 final size:16
Alignment explanation
Indices: 33147540--33147585 Score: 69
Period size: 16 Copynumber: 2.9 Consensus size: 16
33147530 CTAGATCGGC
33147540 AAAA-GCCGAAAAG-T
1 AAAATGCCGAAAAGCT
33147554 AGAAATGCCGAAAAGCT
1 A-AAATGCCGAAAAGCT
33147571 AAAATGCCGAAAAGC
1 AAAATGCCGAAAAGC
33147586 CGGCATTTCG
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
14 1 0.03
15 3 0.10
16 23 0.79
17 2 0.07
ACGTcount: A:0.52, C:0.17, G:0.22, T:0.09
Consensus pattern (16 bp):
AAAATGCCGAAAAGCT
Found at i:33149019 original size:26 final size:26
Alignment explanation
Indices: 33148990--33149040 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
33148980 TACAAATTGA
33148990 TAATGGGTTAGGTAAATGTTCCATGG
1 TAATGGGTTAGGTAAATGTTCCATGG
33149016 TAATGGGTTAGGTAAATGTTCCATG
1 TAATGGGTTAGGTAAATGTTCCATG
33149041 ATGGGAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.08, G:0.29, T:0.35
Consensus pattern (26 bp):
TAATGGGTTAGGTAAATGTTCCATGG
Found at i:33150702 original size:27 final size:26
Alignment explanation
Indices: 33150662--33150748 Score: 129
Period size: 27 Copynumber: 3.2 Consensus size: 26
33150652 AGGAAGTGTC
33150662 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTATGCCAC-ATTATCTGAT
* *
33150689 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAT-TATCTGAT
33150716 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTATGCCAC-ATTATCTGAT
33150743 CTGGTG
1 CTGGTG
33150749 TGTAATATCC
Statistics
Matches: 54, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
26 2 0.04
27 50 0.93
28 2 0.04
ACGTcount: A:0.17, C:0.23, G:0.25, T:0.34
Consensus pattern (26 bp):
CTGGTGGCTATGCCACATTATCTGAT
Found at i:33152091 original size:46 final size:46
Alignment explanation
Indices: 33152041--33152166 Score: 207
Period size: 46 Copynumber: 2.7 Consensus size: 46
33152031 TGGTTGAGCA
* *
33152041 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
33152087 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
33152133 CCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
33152167 GGGGCGGGTT
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 75 1.00
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Done.