Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 110 of 316
Found at i:34641165 original size:14 final size:15
Alignment explanation
Indices: 34641146--34641174 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
34641136 TTCCCGTCTG
34641146 TTTTTCAAT-CTTAA
1 TTTTTCAATACTTAA
34641160 TTTTTCAATACTTAA
1 TTTTTCAATACTTAA
34641175 ATACGAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.31, C:0.14, G:0.00, T:0.55
Consensus pattern (15 bp):
TTTTTCAATACTTAA
Found at i:34642866 original size:4 final size:5
Alignment explanation
Indices: 34642841--34642884 Score: 72
Period size: 5 Copynumber: 8.8 Consensus size: 5
34642831 CCAATTTGTG
34642841 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT -AAAAT AAAAT AAAAT AAAA
34642885 ACATACAGAT
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
4 4 0.11
5 29 0.78
6 4 0.11
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:34644219 original size:16 final size:16
Alignment explanation
Indices: 34644185--34644224 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
34644175 AATGGATAAA
* *
34644185 TTATCTAATTAATTTT
1 TTATCTAATTAAATAT
*
34644201 TTATTTAATTAAATAT
1 TTATCTAATTAAATAT
34644217 TTATCTAA
1 TTATCTAA
34644225 ATACAAAAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (16 bp):
TTATCTAATTAAATAT
Found at i:34646193 original size:24 final size:25
Alignment explanation
Indices: 34646149--34646198 Score: 93
Period size: 24 Copynumber: 2.0 Consensus size: 25
34646139 CTTGAGACCA
34646149 TAATTATAAGGAAAAACTAAGGGGC
1 TAATTATAAGGAAAAACTAAGGGGC
34646174 TAATTATAAGG-AAAACTAAGGGGC
1 TAATTATAAGGAAAAACTAAGGGGC
34646198 T
1 T
34646199 TTTAAGTATA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 14 0.56
25 11 0.44
ACGTcount: A:0.46, C:0.08, G:0.24, T:0.22
Consensus pattern (25 bp):
TAATTATAAGGAAAAACTAAGGGGC
Found at i:34648252 original size:18 final size:19
Alignment explanation
Indices: 34648223--34648261 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
34648213 ATTAATATAT
34648223 TATAATTTTAAAAT-TTAAA
1 TATAATTTT-AAATGTTAAA
34648242 TATAA-TTTAAATGTTAAA
1 TATAATTTTAAATGTTAAA
34648260 TA
1 TA
34648262 CTATTATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.21
18 10 0.53
19 5 0.26
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (19 bp):
TATAATTTTAAATGTTAAA
Found at i:34651386 original size:15 final size:15
Alignment explanation
Indices: 34651366--34651417 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
34651356 ACTACAAAAC
34651366 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
34651381 ATTTATAATTATAATAAAT
1 ATTTATTA-T-TAAT--AT
*
34651400 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
34651415 ATT
1 ATT
34651418 CAATATGTGA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:34651403 original size:19 final size:19
Alignment explanation
Indices: 34651379--34651415 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
34651369 TATTATTAAT
*
34651379 ATATTTATAATTATAATAA
1 ATATTTATAATTAAAATAA
*
34651398 ATATTTATTATTAAAATA
1 ATATTTATAATTAAAATA
34651416 TTCAATATGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
ATATTTATAATTAAAATAA
Found at i:34651452 original size:13 final size:14
Alignment explanation
Indices: 34651432--34651472 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
34651422 ATGTGAAGAA
34651432 TATTATTTAAAATT
1 TATTATTTAAAATT
34651446 T-TTATTTTTAAAATT
1 TATTA--TTTAAAATT
34651461 TATTA-TTAAAAT
1 TATTATTTAAAAT
34651473 AAAATTTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 10 0.42
16 3 0.12
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TATTATTTAAAATT
Found at i:34651457 original size:15 final size:17
Alignment explanation
Indices: 34651432--34651468 Score: 60
Period size: 15 Copynumber: 2.3 Consensus size: 17
34651422 ATGTGAAGAA
34651432 TATTATTTAAAATTT-T
1 TATTATTTAAAATTTAT
34651448 TATT-TTTAAAATTTAT
1 TATTATTTAAAATTTAT
34651464 TATTA
1 TATTA
34651469 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 10 0.53
16 9 0.47
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
TATTATTTAAAATTTAT
Found at i:34651492 original size:18 final size:18
Alignment explanation
Indices: 34651454--34651489 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
34651444 TTTTTATTTT
*
34651454 TAAAATTTATTATTAAAA
1 TAAAATTTAATATTAAAA
34651472 TAAAATTTAAATATTAAA
1 TAAAATTT-AATATTAAA
34651490 TAATTATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
TAAAATTTAATATTAAAA
Found at i:34651519 original size:16 final size:16
Alignment explanation
Indices: 34651500--34651530 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
34651490 TAATTATTAA
34651500 AATAATTAATTATATT
1 AATAATTAATTATATT
*
34651516 AATAATTTATTATAT
1 AATAATTAATTATAT
34651531 GACTAAATAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
AATAATTAATTATATT
Found at i:34652112 original size:13 final size:13
Alignment explanation
Indices: 34652082--34652168 Score: 53
Period size: 12 Copynumber: 6.9 Consensus size: 13
34652072 GTTATCATTA
*
34652082 AATTTTAATAGGAT
1 AATTTTAATA-AAT
34652096 AATTATTAA-AAAT
1 AATT-TTAATAAAT
34652109 AA-TTTAATAAAT
1 AATTTTAATAAAT
*
34652121 AA-TTTAAT-CAT
1 AATTTTAATAAAT
34652132 AA-TTTAAT--AT
1 AATTTTAATAAAT
*
34652142 AATTATTATTAAAT
1 AATT-TTAATAAAT
*
34652156 ATAATTTAATAAA
1 A-ATTTTAATAAA
34652169 AATAAAAAAT
Statistics
Matches: 61, Mismatches: 5, Indels: 14
0.76 0.06 0.17
Matches are distributed among these distances:
10 4 0.07
11 15 0.25
12 17 0.28
13 4 0.07
14 15 0.25
15 6 0.10
ACGTcount: A:0.53, C:0.01, G:0.02, T:0.44
Consensus pattern (13 bp):
AATTTTAATAAAT
Found at i:34652115 original size:26 final size:25
Alignment explanation
Indices: 34652085--34652168 Score: 91
Period size: 26 Copynumber: 3.4 Consensus size: 25
34652075 ATCATTAAAT
*
34652085 TTTAATAGGATAATTATTAAAAATAA
1 TTTAATA-AATAATTATTAAAAATAA
**
34652111 TTTAATAAATAA-T-TTAATCATAA
1 TTTAATAAATAATTATTAAAAATAA
* *
34652134 TTTAATATAATTATTATTAAATATAA
1 TTTAATA-AATAATTATTAAAAATAA
34652160 TTTAATAAA
1 TTTAATAAA
34652169 AATAAAAAAT
Statistics
Matches: 49, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
23 15 0.31
24 5 0.10
25 7 0.14
26 22 0.45
ACGTcount: A:0.52, C:0.01, G:0.02, T:0.44
Consensus pattern (25 bp):
TTTAATAAATAATTATTAAAAATAA
Found at i:34652173 original size:63 final size:63
Alignment explanation
Indices: 34652094--34652236 Score: 173
Period size: 63 Copynumber: 2.3 Consensus size: 63
34652084 TTTTAATAGG
* ** * *
34652094 ATAATTATTAAAAATAATTTAATAAATAATTTAATCATAAT-TTAATATAATTATTATTAAA-T
1 ATAATTAATAAAAATAA-AAAATAAATAATTTAATAACAATCTTAATATAATTATTATTAAAGT
* * *
34652156 ATAATTTAATAAAAATAAAAAATATATAATTTAATAACATTCTTAATATATTTATTATTAAAGT
1 ATAA-TTAATAAAAATAAAAAATAAATAATTTAATAACAATCTTAATATAATTATTATTAAAGT
34652220 ATGAATTAATAAAAATA
1 AT-AATTAATAAAAATA
34652237 TAATATTAGA
Statistics
Matches: 69, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
62 21 0.30
63 31 0.45
64 15 0.22
65 2 0.03
ACGTcount: A:0.55, C:0.02, G:0.01, T:0.42
Consensus pattern (63 bp):
ATAATTAATAAAAATAAAAAATAAATAATTTAATAACAATCTTAATATAATTATTATTAAAGT
Found at i:34655795 original size:19 final size:19
Alignment explanation
Indices: 34655771--34655809 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
34655761 GAAGAGGGAG
34655771 GAAAGAAGTTTGAATTTTT
1 GAAAGAAGTTTGAATTTTT
34655790 GAAAGAAGTTTGAATTTTT
1 GAAAGAAGTTTGAATTTTT
34655809 G
1 G
34655810 TGAATACTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.36, C:0.00, G:0.23, T:0.41
Consensus pattern (19 bp):
GAAAGAAGTTTGAATTTTT
Found at i:34661450 original size:47 final size:47
Alignment explanation
Indices: 34661399--34661885 Score: 641
Period size: 47 Copynumber: 10.1 Consensus size: 47
34661389 TTAGGATTTT
* * *
34661399 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGCCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
**
34661446 ATGTGATGAATGTGAACCCGCATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA----CATGCATATGTGTGATAAGGCCGAATGGCCA
*
34661497 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
**
34661544 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCA
* *
34661595 ATGTGATGAATGTGAACATGCTTATGTGTAATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
** * *
34661642 ATGTGATGAATGTGAACCTGTATATATATATGCGTGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAA-C-----ATGCATATGTGTGATAAGGCCGAATGGCCA
*
34661695 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* *
34661742 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGGCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* *
34661789 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * * *
34661836 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
34661883 ATG
1 ATG
34661886 CGAAACGTGT
Statistics
Matches: 391, Mismatches: 35, Indels: 28
0.86 0.08 0.06
Matches are distributed among these distances:
47 261 0.67
48 1 0.00
49 2 0.01
51 86 0.22
52 1 0.00
53 40 0.10
ACGTcount: A:0.32, C:0.13, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:34661501 original size:24 final size:24
Alignment explanation
Indices: 34661473--34661548 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
34661463 CCGCATATAT
34661473 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
* * **
34661497 ATGTGATGA-ATGTG--AACAT-GCGT
1 ATGTG-TGATAAG-GCCGA-ATGGCCA
34661520 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
34661544 ATGTG
1 ATGTG
34661549 ATGAATGTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 4 0.11
23 12 0.32
24 17 0.46
25 4 0.11
ACGTcount: A:0.29, C:0.13, G:0.33, T:0.25
Consensus pattern (24 bp):
ATGTGTGATAAGGCCGAATGGCCA
Found at i:34661721 original size:100 final size:98
Alignment explanation
Indices: 34661399--34661885 Score: 738
Period size: 98 Copynumber: 5.0 Consensus size: 98
34661389 TTAGGATTTT
* *
34661399 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGCCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
*
34661464 CGCATATATATGTGTGATAAGGCCGAATGGCCA
66 CGTATATATATGTGTGATAAGGCCGAATGGCCA
34661497 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
34661562 CGTATATATATGTGTGATAAGGCCGAATGGCCA
66 CGTATATATATGTGTGATAAGGCCGAATGGCCA
* *
34661595 ATGTGATGAATGTGAACATGCTTATGTGTAATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
* * *
34661660 TGTATATATATATGCGTGATAAGGCCAAATGGCCA
66 CG--TATATATATGTGTGATAAGGCCGAATGGCCA
34661695 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA--
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
*** *
34661758 C--ATGCGTATGTGTGATAAGGCCGAATGGGCA
66 CGTATATATATGTGTGATAAGGCCGAATGGCCA
* * * *
34661789 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
* *
34661854 TG-A-ATATATGTG-G-TAAGGCCGAATGGCTA
66 CGTATATATATGTGTGATAAGGCCGAATGGCCA
34661883 ATG
1 ATG
34661886 CGAAACGTGT
Statistics
Matches: 358, Mismatches: 26, Indels: 14
0.90 0.07 0.04
Matches are distributed among these distances:
94 101 0.28
95 1 0.00
96 6 0.02
97 1 0.00
98 159 0.44
100 90 0.25
ACGTcount: A:0.32, C:0.13, G:0.29, T:0.26
Consensus pattern (98 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
CGTATATATATGTGTGATAAGGCCGAATGGCCA
Found at i:34661722 original size:23 final size:23
Alignment explanation
Indices: 34661695--34661769 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
34661685 CAAATGGCCA
34661695 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
* * **
34661718 ATGTG-TGATAAG-G-CCGAATGGCCA
1 ATGTGATGA-ATGTGAAC--AT-GCGT
34661742 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
34661765 ATGTG
1 ATGTG
34661770 TGATAAGGCC
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
21 1 0.03
22 4 0.11
23 16 0.43
24 11 0.30
25 4 0.11
26 1 0.03
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAACATGCGT
Found at i:34661948 original size:46 final size:46
Alignment explanation
Indices: 34661859--34661949 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
34661849 GAACATGAAT
* * * *
34661859 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
* * *
34661905 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATG
34661950 TGTATATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.33, C:0.10, G:0.32, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
Found at i:34661956 original size:141 final size:140
Alignment explanation
Indices: 34661399--34661894 Score: 481
Period size: 147 Copynumber: 3.4 Consensus size: 140
34661389 TTAGGATTTT
* ** * * * *
34661399 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGCCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGCCAATGCGA-GAACGTGAA--
*** * * * * * *
34661464 CGCATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
63 --CATGCGTATGTGTGATAAAGCCAAATGGGCAATGTGATGAATGTGAACATGCATATATGAGAT
*
34661529 AAGGCCGAATGGCCA
126 AAGGCCAAATGGCCA
** * *
34661544 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 ATGTGATGAATGTGAACATG-A-ATATA--TGTGATAAGGCCGAATGGCCAATGCGA-GAACGTG
* * * * * **
34661609 AACATGCTTATGTGTAATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATATATG
61 AACATGCGTATGTGTGATAAAGCCAAATGGGCAATGTGATGAATGTGAA-C---ATGCATATAT-
*
34661674 CGTGATAAGGCCAAATGGCCA
121 -GAGATAAGGCCAAATGGCCA
** * * *
34661695 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGCCAATGCGA-GAACGTGAACA
* *
34661760 TGCGTATGTGTGATAAGGCCGAATGGGCAATGTGATGAATGTGAACATGCATATATGAGATAAGG
65 TGCGTATGTGTGATAAAGCCAAATGGGCAATGTGATGAATGTGAACATGCATATATGAGATAAGG
*
34661825 CCGAATGGCCA
130 CCAAATGGCCA
* *
34661836 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTAATGCGA-AACGTG
1 ATGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGCCAATGCGAGAACGTG
34661895 TATGAGATGG
Statistics
Matches: 306, Mismatches: 35, Indels: 26
0.83 0.10 0.07
Matches are distributed among these distances:
139 5 0.02
141 65 0.21
143 8 0.03
145 60 0.20
146 2 0.01
147 84 0.27
149 45 0.15
151 37 0.12
ACGTcount: A:0.32, C:0.13, G:0.29, T:0.26
Consensus pattern (140 bp):
ATGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGCCAATGCGAGAACGTGAACAT
GCGTATGTGTGATAAAGCCAAATGGGCAATGTGATGAATGTGAACATGCATATATGAGATAAGGC
CAAATGGCCA
Found at i:34662204 original size:37 final size:37
Alignment explanation
Indices: 34662096--34662204 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
34662086 GGAAATATAT
*
34662096 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
34662133 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
34662170 TCCGGGTAAGACCCGATAACTTCATGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
34662205 CGTCTGAGCT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:34671307 original size:34 final size:36
Alignment explanation
Indices: 34671264--34671346 Score: 116
Period size: 39 Copynumber: 2.3 Consensus size: 36
34671254 GTATCGAATT
*
34671264 CAAAAATAGT-A-AGCATCAAGAGGCGTTACAAACA
1 CAAAAATAGTAACAGCATCAAGAGGCATTACAAACA
34671298 CAAAAATAGTTAACACAGCATCAAGAGGCATTACAAACA
1 CAAAAATAG-T-A-ACAGCATCAAGAGGCATTACAAACA
34671337 CAAAAATAGT
1 CAAAAATAGT
34671347 TTAACACATC
Statistics
Matches: 43, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
34 9 0.21
35 1 0.02
38 2 0.05
39 31 0.72
ACGTcount: A:0.52, C:0.18, G:0.14, T:0.16
Consensus pattern (36 bp):
CAAAAATAGTAACAGCATCAAGAGGCATTACAAACA
Found at i:34671332 original size:39 final size:40
Alignment explanation
Indices: 34671275--34671354 Score: 144
Period size: 39 Copynumber: 2.0 Consensus size: 40
34671265 AAAAATAGTA
*
34671275 AGCATCAAGAGGCGTTACAAACACAAAAATAG-TTAACAC
1 AGCATCAAGAGGCATTACAAACACAAAAATAGTTTAACAC
34671314 AGCATCAAGAGGCATTACAAACACAAAAATAGTTTAACAC
1 AGCATCAAGAGGCATTACAAACACAAAAATAGTTTAACAC
34671354 A
1 A
34671355 TCGTACCGAT
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
39 31 0.79
40 8 0.21
ACGTcount: A:0.50, C:0.20, G:0.14, T:0.16
Consensus pattern (40 bp):
AGCATCAAGAGGCATTACAAACACAAAAATAGTTTAACAC
Found at i:34685470 original size:28 final size:28
Alignment explanation
Indices: 34685432--34685538 Score: 169
Period size: 28 Copynumber: 3.8 Consensus size: 28
34685422 GAATCATTCG
* *
34685432 ATATTTTGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
34685460 ATATCTCGCACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
34685488 ATATTTCGTACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
34685516 ATATTTCGTACACTAAGTGCCAT
1 ATATTTCGCACACTAAGTGCCAT
34685539 ATTTGATTGC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 74 1.00
ACGTcount: A:0.29, C:0.25, G:0.11, T:0.35
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:34691798 original size:16 final size:16
Alignment explanation
Indices: 34691777--34691809 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
34691767 TTTTCACCTA
34691777 TTAGTTAT-AAGTTCAT
1 TTAGTTATGAAG-TCAT
34691793 TTAGTTATGAAGTCAT
1 TTAGTTATGAAGTCAT
34691809 T
1 T
34691810 CCACTATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 13 0.81
17 3 0.19
ACGTcount: A:0.30, C:0.06, G:0.15, T:0.48
Consensus pattern (16 bp):
TTAGTTATGAAGTCAT
Found at i:34696759 original size:24 final size:24
Alignment explanation
Indices: 34696732--34696780 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
34696722 TGCAAAGTAG
34696732 TTACTTTTTGAAGTGGAAAGACTT
1 TTACTTTTTGAAGTGGAAAGACTT
34696756 TTACTTTTTGAAGTGGAAAGACTT
1 TTACTTTTTGAAGTGGAAAGACTT
34696780 T
1 T
34696781 GGAACCCAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.29, C:0.08, G:0.20, T:0.43
Consensus pattern (24 bp):
TTACTTTTTGAAGTGGAAAGACTT
Found at i:34704048 original size:21 final size:22
Alignment explanation
Indices: 34704017--34704057 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
34704007 TTTAAGTAAA
*
34704017 GTTTGTAATTTTATATAATTAG
1 GTTTGTAATTTTACATAATTAG
34704039 GTTT-TAATTTTACATAATT
1 GTTTGTAATTTTACATAATT
34704058 TCATTGAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.32, C:0.02, G:0.10, T:0.56
Consensus pattern (22 bp):
GTTTGTAATTTTACATAATTAG
Found at i:34709445 original size:13 final size:13
Alignment explanation
Indices: 34709427--34709453 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
34709417 CTCTTTCGAA
34709427 CTCTGTTTAAACT
1 CTCTGTTTAAACT
34709440 CTCTGTTTAAACT
1 CTCTGTTTAAACT
34709453 C
1 C
34709454 CTTAAAGTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.26, G:0.07, T:0.44
Consensus pattern (13 bp):
CTCTGTTTAAACT
Found at i:34711337 original size:30 final size:30
Alignment explanation
Indices: 34711301--34711358 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
34711291 TTAAAATTGG
* *
34711301 GCAAAATGACCATTTTGCCCCTAGACTCTT
1 GCAAAATAACCATTTTACCCCTAGACTCTT
34711331 GCAAAATAACCATTTTACCCCTAGACTC
1 GCAAAATAACCATTTTACCCCTAGACTC
34711359 GAAAATTGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.31, G:0.10, T:0.28
Consensus pattern (30 bp):
GCAAAATAACCATTTTACCCCTAGACTCTT
Found at i:34714828 original size:74 final size:74
Alignment explanation
Indices: 34714705--34714844 Score: 253
Period size: 74 Copynumber: 1.9 Consensus size: 74
34714695 GATCCTTAGA
*
34714705 AAGGGATACTTATTCTTCACAGTCACCTTGTTGAGCTGCCTGTAATCTATTCATAACCTCATCGA
1 AAGGGATACTTATTCTTCACAGTCACCTTGTTGAGCTGCCTGTAATCTATACATAACCTCATCGA
34714770 CCCATTGGC
66 CCCATTGGC
* *
34714779 AAGGGATACTTATTCTTCACAGTCACCTTGTTGAGTTGCCTGTAGTCTATACATAACCTCATCGA
1 AAGGGATACTTATTCTTCACAGTCACCTTGTTGAGCTGCCTGTAATCTATACATAACCTCATCGA
34714844 C
66 C
34714845 TTGTCTTTCT
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
74 63 1.00
ACGTcount: A:0.25, C:0.26, G:0.16, T:0.33
Consensus pattern (74 bp):
AAGGGATACTTATTCTTCACAGTCACCTTGTTGAGCTGCCTGTAATCTATACATAACCTCATCGA
CCCATTGGC
Found at i:34717421 original size:15 final size:14
Alignment explanation
Indices: 34717335--34717425 Score: 50
Period size: 14 Copynumber: 6.6 Consensus size: 14
34717325 TTAATTTAGT
*
34717335 AAATGAAAGAAATA-
1 AAATGAAATAAA-AG
34717349 AAATGAAAT-AAAG
1 AAATGAAATAAAAG
34717362 -AAT-AAATAAAAG
1 AAATGAAATAAAAG
*
34717374 AAA-GAAATATAAG
1 AAATGAAATAAAAG
* * *
34717387 AAAAAGAAACAGGTAAG
1 -AAATGAAATA--AAAG
34717404 AAATGAAATAGAAAG
1 AAATGAAATA-AAAG
34717419 AAA-GAAA
1 AAATGAAA
34717426 GAAGAAAAAA
Statistics
Matches: 63, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
11 4 0.06
12 8 0.13
13 12 0.19
14 15 0.24
15 12 0.19
16 8 0.13
17 4 0.06
ACGTcount: A:0.70, C:0.01, G:0.16, T:0.12
Consensus pattern (14 bp):
AAATGAAATAAAAG
Found at i:34718478 original size:40 final size:37
Alignment explanation
Indices: 34718388--34718486 Score: 94
Period size: 40 Copynumber: 2.6 Consensus size: 37
34718378 CGGATAGATT
34718388 CGATGAGGCGTTGGTCGCCACTTTGCTTTGGCTTAGC
1 CGATGAGGCGTTGGTCGCCACTTTGCTTTGGCTTAGC
** * *
34718425 CGATGAGATGTTGGTCGTCACTTATTTGC-TTGGAAC-TATC
1 CGATGAGGCGTTGGTCGCCAC---TTTGCTTTGG--CTTAGC
*
34718465 CGATGAGGCGTTGGCCGCCACT
1 CGATGAGGCGTTGGTCGCCACT
34718487 CTGGTGTGTT
Statistics
Matches: 49, Mismatches: 8, Indels: 10
0.73 0.12 0.15
Matches are distributed among these distances:
37 19 0.39
39 4 0.08
40 25 0.51
41 1 0.02
ACGTcount: A:0.15, C:0.23, G:0.30, T:0.31
Consensus pattern (37 bp):
CGATGAGGCGTTGGTCGCCACTTTGCTTTGGCTTAGC
Found at i:34724277 original size:8 final size:8
Alignment explanation
Indices: 34724264--34724306 Score: 59
Period size: 8 Copynumber: 5.4 Consensus size: 8
34724254 GTAAAAGCTA
34724264 AAATGCTG
1 AAATGCTG
34724272 AAATGCTG
1 AAATGCTG
34724280 AAATGCTG
1 AAATGCTG
* *
34724288 AATTGCCG
1 AAATGCTG
*
34724296 AAATGCCG
1 AAATGCTG
34724304 AAA
1 AAA
34724307 GTTTTGCTGC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.23, T:0.21
Consensus pattern (8 bp):
AAATGCTG
Found at i:34724559 original size:29 final size:28
Alignment explanation
Indices: 34724518--34724576 Score: 100
Period size: 29 Copynumber: 2.1 Consensus size: 28
34724508 GTGAGCATGA
34724518 ATATAATGTGATTTGGGCCTAAAGGGCC
1 ATATAATGTGATTTGGGCCTAAAGGGCC
*
34724546 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATAT-AATGTGATTTGGGCCTAAAGGGCC
34724575 AT
1 AT
34724577 GTGAATATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 4 0.14
29 25 0.86
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.31
Consensus pattern (28 bp):
ATATAATGTGATTTGGGCCTAAAGGGCC
Found at i:34728738 original size:16 final size:16
Alignment explanation
Indices: 34728719--34728749 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
34728709 CTTCTTCACT
34728719 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
34728735 TACTTACTTACTTAA
1 TACTCACTTACTTAA
34728750 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:34728755 original size:20 final size:20
Alignment explanation
Indices: 34728716--34728755 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
34728706 AAACTTCTTC
* *
34728716 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
34728736 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
34728756 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:34728869 original size:23 final size:24
Alignment explanation
Indices: 34728828--34728872 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
34728818 TTTGCTCTTC
* *
34728828 TAGCATGAACTTGTTTTACCTTTT
1 TAGCATGAACTCGTCTTACCTTTT
34728852 TAGCAT-AACTCGTCTTACCTT
1 TAGCATGAACTCGTCTTACCTT
34728873 ACCTTACCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.22, C:0.22, G:0.11, T:0.44
Consensus pattern (24 bp):
TAGCATGAACTCGTCTTACCTTTT
Found at i:34729095 original size:55 final size:53
Alignment explanation
Indices: 34728938--34729124 Score: 166
Period size: 55 Copynumber: 3.5 Consensus size: 53
34728928 GATACACGGG
* * *
34728938 TGACATGGTCTTACATGGTATCCTTGCCTTATG-AACTCACCAATGTCATGCCT
1 TGACATGGTCTTACATGATATCCTTGCCTTA-GAAACTTACCAATGCCATGCCT
* * * * **
34728991 TGGCATGGTCTTACAT-AGGA-CCTTTGCCTT-GTAATAACTTATCAATGCCACGTTT
1 TGACATGGTCTTACATGA-TATCC-TTGCCTTAG--A-AACTTACCAATGCCATGCCT
*
34729046 TGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAATTGCCATGCCT
1 TGACATGGTCTTACATGATATCCTTGCCTTAGAAA-CTTACCAA-TGCCATGCCT
* *
34729101 TGGCATGGTCTTACATGGTATCCT
1 TGACATGGTCTTACATGATATCCT
34729125 GAAACCCTAA
Statistics
Matches: 104, Mismatches: 19, Indels: 20
0.73 0.13 0.14
Matches are distributed among these distances:
51 1 0.01
52 2 0.02
53 25 0.24
54 8 0.08
55 64 0.62
56 4 0.04
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (53 bp):
TGACATGGTCTTACATGATATCCTTGCCTTAGAAACTTACCAATGCCATGCCT
Found at i:34731591 original size:29 final size:28
Alignment explanation
Indices: 34731550--34731608 Score: 91
Period size: 29 Copynumber: 2.1 Consensus size: 28
34731540 GTGAGAATGA
34731550 ATATAATGTGATTTGGGCCTAAAGGGCC
1 ATATAATGTGATTTGGGCCTAAAGGGCC
* *
34731578 ATATAAATGTGATTTGGGTCTAATGGGCC
1 ATAT-AATGTGATTTGGGCCTAAAGGGCC
34731607 AT
1 AT
34731609 GTGAATATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
28 4 0.14
29 24 0.86
ACGTcount: A:0.29, C:0.12, G:0.27, T:0.32
Consensus pattern (28 bp):
ATATAATGTGATTTGGGCCTAAAGGGCC
Found at i:34734562 original size:14 final size:14
Alignment explanation
Indices: 34734511--34734571 Score: 61
Period size: 15 Copynumber: 4.2 Consensus size: 14
34734501 AATGAATAAT
34734511 AAATA-AAAGAAAG
1 AAATAGAAAGAAAG
* * *
34734524 AAAAACAAGAAAAAG
1 AAATAGAA-AGAAAG
34734539 AAATAGAGAAGAAACG
1 AAATAGA-AAGAAA-G
34734555 AAATAGAAAGAAAG
1 AAATAGAAAGAAAG
34734569 AAA
1 AAA
34734572 GAAGAAAAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
13 4 0.10
14 6 0.15
15 20 0.51
16 9 0.23
ACGTcount: A:0.74, C:0.03, G:0.18, T:0.05
Consensus pattern (14 bp):
AAATAGAAAGAAAG
Found at i:34734577 original size:15 final size:14
Alignment explanation
Indices: 34734516--34734590 Score: 55
Period size: 15 Copynumber: 5.2 Consensus size: 14
34734506 ATAATAAATA
*
34734516 AAAGAAAGAAAAAC
1 AAAGAAAGAAAAAG
* *
34734530 AAGAAAAAGAAATAG
1 AA-AGAAAGAAAAAG
*
34734545 AGAAGAAACGAAATAG
1 A-AAGAAA-GAAAAAG
34734561 AAAGAAAGAAAGAAG
1 AAAGAAAGAAA-AAG
*
34734576 AAA-AAA-AATAAG
1 AAAGAAAGAAAAAG
34734588 AAA
1 AAA
34734591 AAGGAGAAAT
Statistics
Matches: 51, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
12 6 0.12
13 2 0.04
14 9 0.18
15 25 0.49
16 9 0.18
ACGTcount: A:0.75, C:0.03, G:0.19, T:0.04
Consensus pattern (14 bp):
AAAGAAAGAAAAAG
Found at i:34735762 original size:26 final size:26
Alignment explanation
Indices: 34735714--34735763 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
34735704 AGAAAAATCA
* *
34735714 AATGAAATTGATAAATTGAATTATTG
1 AATGAAATTGAGAAAGTGAATTATTG
34735740 AATGAAA-TGAGAAAGTGATATTAT
1 AATGAAATTGAGAAAGTGA-ATTAT
34735764 AAGATGAGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 9 0.43
26 12 0.57
ACGTcount: A:0.48, C:0.00, G:0.18, T:0.34
Consensus pattern (26 bp):
AATGAAATTGAGAAAGTGAATTATTG
Found at i:34738298 original size:49 final size:49
Alignment explanation
Indices: 34738198--34738369 Score: 138
Period size: 49 Copynumber: 3.5 Consensus size: 49
34738188 AGATGCCGAC
* *
34738198 GCCATGTCCCAGACATGGTCTTACACTGGATTTCATATAGCGAGGCTGAT
1 GCCATGTCCCAGACA-GGTCTTACACCGGATCTCATATAGCGAGGCTGAT
* * *
34738248 GCCATGTCCCAGACAGGTCTTACACCGGCTCTCATTTATCG-GTG-TCGAT
1 GCCATGTCCCAGACAGGTCTTACACCGGATCTCATATAGCGAG-GCT-GAT
* * * * ** * *
34738297 GCCATGTCTCATACAGGCCTTACACTAGCTTGTC-TACT-GCGAGGCTAAT
1 GCCATGTCCCAGACAGGTCTTACAC-CGGATCTCATA-TAGCGAGGCTGAT
*
34738346 G-CATGTCCCAGACATGTCTTACAC
1 GCCATGTCCCAGACAGGTCTTACAC
34738370 TAGCTCTTGT
Statistics
Matches: 97, Mismatches: 19, Indels: 14
0.75 0.15 0.11
Matches are distributed among these distances:
48 21 0.22
49 54 0.56
50 22 0.23
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (49 bp):
GCCATGTCCCAGACAGGTCTTACACCGGATCTCATATAGCGAGGCTGAT
Found at i:34738367 original size:48 final size:46
Alignment explanation
Indices: 34738315--34738512 Score: 172
Period size: 48 Copynumber: 4.2 Consensus size: 46
34738305 TCATACAGGC
34738315 CTTACACTAGCTTGTCTACTGCGAGGCTAATGCATGTCCCAGACATGT
1 CTTACACTAGCTT-TCTACT-CGAGGCTAATGCATGTCCCAGACATGT
* * * * *
34738363 CTTACACTAGCTCTTGT-CTCAATGCCAATGCATGTCCTAGACATGT
1 CTTACACTAGCT-TTCTACTCGAGGCTAATGCATGTCCCAGACATGT
* ** *
34738409 CTTACACTGGCTTAAATATCTCGAGGCCT-ATGCATTTCCCAGACATGT
1 CTTACACTAGCTT-TCTA-CTCGAGG-CTAATGCATGTCCCAGACATGT
* * *
34738457 CTTACACTAGCTCTCATGCT-GTGGC-AGAT-CATGTCCCAGACATGT
1 CTTACACTAGCTTTC-TACTCGAGGCTA-ATGCATGTCCCAGACATGT
*
34738502 CTTACAGTAGC
1 CTTACACTAGC
34738513 ACACATATCA
Statistics
Matches: 121, Mismatches: 21, Indels: 19
0.75 0.13 0.12
Matches are distributed among these distances:
45 27 0.22
46 40 0.33
47 4 0.03
48 48 0.40
49 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (46 bp):
CTTACACTAGCTTTCTACTCGAGGCTAATGCATGTCCCAGACATGT
Found at i:34753370 original size:13 final size:13
Alignment explanation
Indices: 34753352--34753376 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
34753342 GTAAATTGAT
34753352 AATTAAACAAAAA
1 AATTAAACAAAAA
34753365 AATTAAACAAAA
1 AATTAAACAAAA
34753377 CAAAATTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (13 bp):
AATTAAACAAAAA
Found at i:34754211 original size:45 final size:43
Alignment explanation
Indices: 34754147--34754271 Score: 135
Period size: 44 Copynumber: 2.8 Consensus size: 43
34754137 TTGAGGAATA
* *
34754147 AGAAAGACCATGGTTGAAAGATATCATGGCATTATACCCAAAAT
1 AGAAAGACCATAGTTGAAAGATATCATGGCATTA-AACCAAAAT
* *
34754191 GAGAAAGACTATAGTTGAAAGATA-CTATGGCATTAAACCAGAAT
1 -AGAAAGACCATAGTTGAAAGATATC-ATGGCATTAAACCAAAAT
* * * *
34754235 AGGTAAGACCCTAGTTCAAAGATATTATGGCATTAAA
1 A-GAAAGACCATAGTTGAAAGATATCATGGCATTAAA
34754272 TTTGAATGAA
Statistics
Matches: 68, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
43 1 0.01
44 37 0.54
45 30 0.44
ACGTcount: A:0.43, C:0.14, G:0.19, T:0.24
Consensus pattern (43 bp):
AGAAAGACCATAGTTGAAAGATATCATGGCATTAAACCAAAAT
Found at i:34762570 original size:16 final size:17
Alignment explanation
Indices: 34762538--34762570 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
34762528 TGAATTCTAG
*
34762538 TAGCTATAAGGATTCAA
1 TAGCTATAAGAATTCAA
34762555 TAGCTAT-AGAATTCAA
1 TAGCTATAAGAATTCAA
34762571 GCCTAGAGGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (17 bp):
TAGCTATAAGAATTCAA
Found at i:34765691 original size:24 final size:23
Alignment explanation
Indices: 34765646--34765697 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 23
34765636 TAAGTTGAAG
34765646 AAAATTAAAAAAAACAACTAAAA
1 AAAATTAAAAAAAACAACTAAAA
34765669 CAAAATTAAAAAAGAA-AGA-TAAAA
1 -AAAATTAAAAAA-AACA-ACTAAAA
34765693 AAAAT
1 AAAAT
34765698 AATAATAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
23 5 0.19
24 18 0.69
25 3 0.12
ACGTcount: A:0.77, C:0.06, G:0.04, T:0.13
Consensus pattern (23 bp):
AAAATTAAAAAAAACAACTAAAA
Found at i:34765785 original size:21 final size:21
Alignment explanation
Indices: 34765747--34765812 Score: 62
Period size: 21 Copynumber: 3.1 Consensus size: 21
34765737 AATTGTAATG
* * *
34765747 AAAATAGTAAAAAAAACATGAA
1 AAAATAATAAAAATAACA-AAA
*
34765769 AAAA-AATAGAAATAACAAAA
1 AAAATAATAAAAATAACAAAA
*
34765789 AAAATAATAAAAATATATAAAA
1 AAAATAATAAAAATA-ACAAAA
34765811 AA
1 AA
34765813 CTTGAAATAT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
20 6 0.17
21 19 0.53
22 11 0.31
ACGTcount: A:0.77, C:0.03, G:0.05, T:0.15
Consensus pattern (21 bp):
AAAATAATAAAAATAACAAAA
Found at i:34765839 original size:17 final size:16
Alignment explanation
Indices: 34765788--34765841 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 16
34765778 AAATAACAAA
*
34765788 AAAAATAATAAAAATAT
1 AAAAA-AATTAAAATAT
*
34765805 ATAAAAAACTTGAAATAT
1 A-AAAAAA-TTAAAATAT
34765823 AAAAAAATTAAAGATAT
1 AAAAAAATTAAA-ATAT
34765840 AA
1 AA
34765842 GTATAAGAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
16 4 0.13
17 15 0.48
18 12 0.39
ACGTcount: A:0.70, C:0.02, G:0.04, T:0.24
Consensus pattern (16 bp):
AAAAAAATTAAAATAT
Found at i:34766261 original size:30 final size:30
Alignment explanation
Indices: 34766225--34766282 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
34766215 ATGTGAGATC
* *
34766225 CCACACACCCGTATGTCCAGGCCGTGTGCT
1 CCACACACCCGTATGTCCAAGCCATGTGCT
*
34766255 CCACACACCCGTGTGTCCAAGCCATGTG
1 CCACACACCCGTATGTCCAAGCCATGTG
34766283 GGTAAAAAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.19, C:0.40, G:0.22, T:0.19
Consensus pattern (30 bp):
CCACACACCCGTATGTCCAAGCCATGTGCT
Found at i:34772332 original size:162 final size:162
Alignment explanation
Indices: 34772065--34772385 Score: 597
Period size: 162 Copynumber: 2.0 Consensus size: 162
34772055 TAAACCCCTC
*
34772065 GGTAAGGTTGTGATTGAGTAAGTTTGACTATGAGATTTATCATGACATTTATGTTAATTTACTTC
1 GGTAAGGTTGTGATTAAGTAAGTTTGACTATGAGATTTATCATGACATTTATGTTAATTTACTTC
*
34772130 ATGTTAATTGTATGTTAAATGTAAGTTTATAATTCTTATTATTTGCATGGGAACTTGCTAAGCTA
66 ATGTTAATTGTATGTTAAATGTAAGTTTATAATTCTTATTATTTGCATGGGAACTTACTAAGCTA
34772195 TATAGTTTACTCCCATTTCTTTTCCCTTTCTT
131 TATAGTTTACTCCCATTTCTTTTCCCTTTCTT
34772227 GGTAAGGTTGTGATTAAGTAAGTTTGACTATGAGATTTATCATGACATTTATGTTAATTTACTTC
1 GGTAAGGTTGTGATTAAGTAAGTTTGACTATGAGATTTATCATGACATTTATGTTAATTTACTTC
* *
34772292 ATGTTAATTGTATGTTAAATGTGAGTTTATAATTCTTATTATTTGTATGGGAACTTACTAAGCTA
66 ATGTTAATTGTATGTTAAATGTAAGTTTATAATTCTTATTATTTGCATGGGAACTTACTAAGCTA
*
34772357 TATAGTTTACTCCCCTTTCTTTTCCCTTT
131 TATAGTTTACTCCCATTTCTTTTCCCTTT
34772386 TCTTATAGTG
Statistics
Matches: 154, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
162 154 1.00
ACGTcount: A:0.26, C:0.12, G:0.16, T:0.46
Consensus pattern (162 bp):
GGTAAGGTTGTGATTAAGTAAGTTTGACTATGAGATTTATCATGACATTTATGTTAATTTACTTC
ATGTTAATTGTATGTTAAATGTAAGTTTATAATTCTTATTATTTGCATGGGAACTTACTAAGCTA
TATAGTTTACTCCCATTTCTTTTCCCTTTCTT
Found at i:34777831 original size:18 final size:17
Alignment explanation
Indices: 34777798--34777842 Score: 54
Period size: 18 Copynumber: 2.6 Consensus size: 17
34777788 TCTAATCATC
*
34777798 TTTTATAATGTTTATAT
1 TTTTATAATGTTTATAA
*
34777815 TTTTATATTGTTTTATAA
1 TTTTATAATG-TTTATAA
*
34777833 TTTTAAAATG
1 TTTTATAATG
34777843 AATGTAAACA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
17 9 0.39
18 14 0.61
ACGTcount: A:0.31, C:0.00, G:0.07, T:0.62
Consensus pattern (17 bp):
TTTTATAATGTTTATAA
Found at i:34778082 original size:13 final size:13
Alignment explanation
Indices: 34778064--34778091 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
34778054 ACTTCATCGT
34778064 TATTATTAATTAC
1 TATTATTAATTAC
34778077 TATTATTAATTAC
1 TATTATTAATTAC
34778090 TA
1 TA
34778092 ATGGCTAGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.54
Consensus pattern (13 bp):
TATTATTAATTAC
Found at i:34779732 original size:15 final size:15
Alignment explanation
Indices: 34779712--34779752 Score: 50
Period size: 14 Copynumber: 2.7 Consensus size: 15
34779702 GTAAAGAGAA
34779712 TAAATTCCA-AAAAAT
1 TAAATT-CATAAAAAT
34779727 TAAATT-ATAAAAAT
1 TAAATTCATAAAAAT
34779741 TAAATTCTATAA
1 TAAATTC-ATAA
34779753 CTAAGAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
13 1 0.04
14 12 0.52
15 6 0.26
16 4 0.17
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (15 bp):
TAAATTCATAAAAAT
Found at i:34780209 original size:9 final size:9
Alignment explanation
Indices: 34780185--34780257 Score: 51
Period size: 9 Copynumber: 7.9 Consensus size: 9
34780175 AAAATTATTA
*
34780185 TTTTAGAAAA
1 TTTTA-AAAT
34780195 TTTTAAAAT
1 TTTTAAAAT
34780204 TTTTAAAAT
1 TTTTAAAAT
*
34780213 ATATATAAAA-
1 -T-TTTAAAAT
*
34780223 -GTTAAAAT
1 TTTTAAAAT
34780231 TTTTATAAAT
1 TTTTA-AAAT
*
34780241 ATTTAAAAT
1 TTTTAAAAT
*
34780250 TCTTAAAA
1 TTTTAAAA
34780258 ATTATTTTGA
Statistics
Matches: 50, Mismatches: 8, Indels: 11
0.72 0.12 0.16
Matches are distributed among these distances:
7 5 0.10
9 25 0.50
10 14 0.28
11 6 0.12
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.45
Consensus pattern (9 bp):
TTTTAAAAT
Found at i:34780255 original size:28 final size:28
Alignment explanation
Indices: 34780191--34780257 Score: 86
Period size: 28 Copynumber: 2.4 Consensus size: 28
34780181 ATTATTTTAG
34780191 AAAATTTTAAAATTTTTAAAATATATAT
1 AAAATTTTAAAATTTTTAAAATATATAT
*
34780219 AAAA-GTTAAAATTTTTATAAATAT-T-T
1 AAAATTTTAAAATTTTTA-AAATATATAT
34780245 AAAATTCTTAAAA
1 AAAATT-TTAAAA
34780258 ATTATTTTGA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
26 5 0.15
27 13 0.38
28 16 0.47
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (28 bp):
AAAATTTTAAAATTTTTAAAATATATAT
Found at i:34781213 original size:22 final size:21
Alignment explanation
Indices: 34781188--34781242 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 21
34781178 TAATGGTAGC
34781188 AAATATATATAATGCGAATTTT
1 AAATATATATAAT-CGAATTTT
* * * *
34781210 AAATGAAAAATAATTGTATTTT
1 AAAT-ATATATAATCGAATTTT
34781232 AAATATATATA
1 AAATATATATA
34781243 GATGACTTAA
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
21 5 0.19
22 14 0.54
23 7 0.27
ACGTcount: A:0.51, C:0.02, G:0.07, T:0.40
Consensus pattern (21 bp):
AAATATATATAATCGAATTTT
Found at i:34784596 original size:19 final size:19
Alignment explanation
Indices: 34784552--34784588 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
34784542 AATAAAAATA
34784552 AAAAATTGAATGTTATTTG
1 AAAAATTGAATGTTATTTG
34784571 ATAAAATT-AATGTTATTT
1 A-AAAATTGAATGTTATTT
34784589 TTAAAAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.43, C:0.00, G:0.11, T:0.46
Consensus pattern (19 bp):
AAAAATTGAATGTTATTTG
Found at i:34784602 original size:21 final size:19
Alignment explanation
Indices: 34784550--34784602 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 19
34784540 TTAATAAAAA
34784550 TAAAAAATTGAATGTTATTT
1 TAAAAAATT-AATGTTATTT
* *
34784570 GATAAAATTAATGTTATTTT
1 TAAAAAATTAATGTTA-TTT
34784590 TAAAAATATTAAT
1 TAAAAA-ATTAAT
34784603 ATATTATTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
19 7 0.26
20 14 0.52
21 6 0.22
ACGTcount: A:0.47, C:0.00, G:0.08, T:0.45
Consensus pattern (19 bp):
TAAAAAATTAATGTTATTT
Found at i:34788462 original size:88 final size:88
Alignment explanation
Indices: 34788313--34788488 Score: 244
Period size: 88 Copynumber: 2.0 Consensus size: 88
34788303 TTTTATTCGA
* * * * **
34788313 TGCTAAGTCGTTATGTCCGTTGCTTTCATCATTCCGAGCTCAAACAAACCAGGGCGTAACTATAG
1 TGCTAAGTCGTTATGTCCGGTGCATTCATCATTCCGAGCTCAAACAAACAAGGACACAACTATAG
34788378 ATGGAAACGCGGCGGATATAATT
66 ATGGAAACGCGGCGGATATAATT
* * * *
34788401 TGCTAAGTCGTTATGTCCGGTGCATTCGTCATTCTGAGCTCAAAGAAACAAGGACACAACTATGG
1 TGCTAAGTCGTTATGTCCGGTGCATTCATCATTCCGAGCTCAAACAAACAAGGACACAACTATAG
* *
34788466 ATGGAAATGTGGCGGATATAATT
66 ATGGAAACGCGGCGGATATAATT
34788489 CTTGTTATTA
Statistics
Matches: 76, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
88 76 1.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (88 bp):
TGCTAAGTCGTTATGTCCGGTGCATTCATCATTCCGAGCTCAAACAAACAAGGACACAACTATAG
ATGGAAACGCGGCGGATATAATT
Found at i:34793776 original size:100 final size:100
Alignment explanation
Indices: 34793599--34793806 Score: 389
Period size: 100 Copynumber: 2.1 Consensus size: 100
34793589 AAAATTAATG
* *
34793599 TTTTTTAGTACAACGAGTGTCACTTTTTTGTATTACCTAATGCATAAGATTATATAATACTAGTA
1 TTTTTTGGTACAACGAATGTCACTTTTTTGTATTACCTAATGCATAAGATTATATAATACTAGTA
34793664 TAATACCCAAGTCATACATTGTGTTAGATAATTAT
66 TAATACCCAAGTCATACATTGTGTTAGATAATTAT
34793699 TTTTTTGGTACAACGAATGTCACTTTTTTGTATTACCTAATGCATAAGATTATATAATACTAGTA
1 TTTTTTGGTACAACGAATGTCACTTTTTTGTATTACCTAATGCATAAGATTATATAATACTAGTA
*
34793764 TAATACCTAAGTCATACATTGTGTTAGATAATTAT
66 TAATACCCAAGTCATACATTGTGTTAGATAATTAT
34793799 TTTTTTGG
1 TTTTTTGG
34793807 AATAATATTT
Statistics
Matches: 105, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
100 105 1.00
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.43
Consensus pattern (100 bp):
TTTTTTGGTACAACGAATGTCACTTTTTTGTATTACCTAATGCATAAGATTATATAATACTAGTA
TAATACCCAAGTCATACATTGTGTTAGATAATTAT
Found at i:34793995 original size:22 final size:23
Alignment explanation
Indices: 34793954--34794004 Score: 77
Period size: 22 Copynumber: 2.3 Consensus size: 23
34793944 TCTTAGCGGA
34793954 ATTATAGAGTAAAAGATTTTGAT
1 ATTATAGAGTAAAAGATTTTGAT
* *
34793977 ATTATA-AGTTAAAGTTTTTGAT
1 ATTATAGAGTAAAAGATTTTGAT
34793999 ATTATA
1 ATTATA
34794005 TTTATATTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
22 20 0.77
23 6 0.23
ACGTcount: A:0.41, C:0.00, G:0.14, T:0.45
Consensus pattern (23 bp):
ATTATAGAGTAAAAGATTTTGAT
Found at i:34796563 original size:12 final size:12
Alignment explanation
Indices: 34796546--34796570 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
34796536 CAATTCAAAG
34796546 TAAAAGTTACTC
1 TAAAAGTTACTC
34796558 TAAAAGTTACTC
1 TAAAAGTTACTC
34796570 T
1 T
34796571 TACAACCCCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.36
Consensus pattern (12 bp):
TAAAAGTTACTC
Found at i:34801242 original size:29 final size:29
Alignment explanation
Indices: 34801210--34801573 Score: 231
Period size: 29 Copynumber: 12.5 Consensus size: 29
34801200 TAACCGTCCA
* *
34801210 TTTTCATATTCGATGGTTGAAACCATCCC
1 TTTTCATATTCGATGGTCGAAACTATCCC
* ** *
34801239 TTTTCATTAATCGATGGTCGTCACCATCCC
1 TTTTCA-TATTCGATGGTCGAAACTATCCC
* * *
34801269 TTTTCACAGTT-GATGGTC-ATCACCATCCC
1 TTTTCATA-TTCGATGGTCGA-AACTATCCC
* * *
34801298 TTTTCATAATCGATAG-CCAAAGCTATCCC
1 TTTTCATATTCGATGGTCGAAA-CTATCCC
* * * *
34801327 -TTTCATATTCGATAGTCGAAGCAATCCT
1 TTTTCATATTCGATGGTCGAAACTATCCC
* * * ** *
34801355 TTTTCATTTTTGTTGGTCGTCACCATCCC
1 TTTTCATATTCGATGGTCGAAACTATCCC
34801384 TTTTCATAGTT-GATGGTC-ATCAA-TATCCC
1 TTTTCATA-TTCGATGGTCGA--AACTATCCC
* *** *
34801413 TTTTCATAATCGATAACCGAAGCTATCCC
1 TTTTCATATTCGATGGTCGAAACTATCCC
* * * ** *
34801442 TTTTCATATTCAATAGCCGAAGTTATACC
1 TTTTCATATTCGATGGTCGAAACTATCCC
* * *
34801471 TTTTTATATTCGATGG-CTGAAGCTATCCT
1 TTTTCATATTCGATGGTC-GAAACTATCCC
34801500 TTTTCATATTCGATGGTCGAAACTATCCC
1 TTTTCATATTCGATGGTCGAAACTATCCC
* * *
34801529 TTTTCATATTCGATGGCCAAAATTATCCC
1 TTTTCATATTCGATGGTCGAAACTATCCC
*
34801558 TTTTCATTAGTCGATG
1 TTTTCA-TATTCGATG
34801574 ATCACCTATA
Statistics
Matches: 264, Mismatches: 54, Indels: 33
0.75 0.15 0.09
Matches are distributed among these distances:
28 25 0.09
29 200 0.76
30 39 0.15
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.38
Consensus pattern (29 bp):
TTTTCATATTCGATGGTCGAAACTATCCC
Found at i:34801411 original size:86 final size:86
Alignment explanation
Indices: 34801264--34801448 Score: 203
Period size: 86 Copynumber: 2.1 Consensus size: 86
34801254 GGTCGTCACC
*** *
34801264 ATCCCTTTTCACAGTTGATGGTCATCACCATCCCTTTTCATAATCGATAGCCAAAGCTATCCC-T
1 ATCCCTTTTCATTTTTGTTGGTCATCACCATCCCTTTTCATAATCGATAGCCAAA-CTATCCCTT
* **
34801328 TTCATATTCGATAGTCGAAGCA
65 TTCATAATCGATAACCGAAGCA
* * * * * *
34801350 ATCCTTTTTCATTTTTGTTGGTCGTCACCATCCCTTTTCATAGTTGATGGTCATCAA-TATCCCT
1 ATCCCTTTTCATTTTTGTTGGTCATCACCATCCCTTTTCATAATCGATAGCCA--AACTATCCCT
*
34801414 TTTCATAATCGATAACCGAAGCT
64 TTTCATAATCGATAACCGAAGCA
34801437 ATCCCTTTTCAT
1 ATCCCTTTTCAT
34801449 ATTCAATAGC
Statistics
Matches: 81, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
86 49 0.60
87 30 0.37
88 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.12, T:0.38
Consensus pattern (86 bp):
ATCCCTTTTCATTTTTGTTGGTCATCACCATCCCTTTTCATAATCGATAGCCAAACTATCCCTTT
TCATAATCGATAACCGAAGCA
Found at i:34801414 original size:115 final size:117
Alignment explanation
Indices: 34801210--34801463 Score: 359
Period size: 115 Copynumber: 2.2 Consensus size: 117
34801200 TAACCGTCCA
* * * *
34801210 TTTTCATATTCGATGGTTGAAACCATCCCTTTTCATTAATCGATGGTCGTCACCATCCCTTTTCA
1 TTTTCATATTCGATAGTCGAAGCAATCCCTTTTCATTAATCGATGGTCGTCACCATCCCTTTTCA
* *
34801275 CAGTTGATGGTCATCACCATCCCTTTTCATAATCGATAGCCAAAGCTATCCC
66 CAGTTGATGGTCATCAACATCCCTTTTCATAATCGATAACCAAAGCTATCCC
* * * *
34801327 -TTTCATATTCGATAGTCGAAGCAATCCTTTTTCATT-TTTGTTGGTCGTCACCATCCCTTTTCA
1 TTTTCATATTCGATAGTCGAAGCAATCCCTTTTCATTAATCGATGGTCGTCACCATCCCTTTTCA
* * *
34801390 TAGTTGATGGTCATCAATATCCCTTTTCATAATCGATAACCGAAGCTATCCC
66 CAGTTGATGGTCATCAACATCCCTTTTCATAATCGATAACCAAAGCTATCCC
* *
34801442 TTTTCATATTCAATAGCCGAAG
1 TTTTCATATTCGATAGTCGAAG
34801464 TTATACCTTT
Statistics
Matches: 121, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
115 71 0.59
116 50 0.41
ACGTcount: A:0.24, C:0.26, G:0.13, T:0.37
Consensus pattern (117 bp):
TTTTCATATTCGATAGTCGAAGCAATCCCTTTTCATTAATCGATGGTCGTCACCATCCCTTTTCA
CAGTTGATGGTCATCAACATCCCTTTTCATAATCGATAACCAAAGCTATCCC
Found at i:34803508 original size:43 final size:42
Alignment explanation
Indices: 34803455--34803539 Score: 143
Period size: 43 Copynumber: 2.0 Consensus size: 42
34803445 TCATATTTCA
*
34803455 TTTCTTATCTCATAATCATTTCTCATCTTTGCCATTTCAATAT
1 TTTCTCATCTCATAATCATTTCTCAT-TTTGCCATTTCAATAT
*
34803498 TTTCTCATCTCATATTCATTTCTCATTTTGCCATTTCAATAT
1 TTTCTCATCTCATAATCATTTCTCATTTTGCCATTTCAATAT
34803540 CAATCACATA
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
42 16 0.40
43 24 0.60
ACGTcount: A:0.22, C:0.24, G:0.02, T:0.52
Consensus pattern (42 bp):
TTTCTCATCTCATAATCATTTCTCATTTTGCCATTTCAATAT
Found at i:34803862 original size:49 final size:49
Alignment explanation
Indices: 34803789--34803885 Score: 176
Period size: 49 Copynumber: 2.0 Consensus size: 49
34803779 TCTAACTCAG
*
34803789 CCCGATACAGTTAATAGGGTTCTATTTTACTTTTCAATACAACCAATGA
1 CCCGATACAGTTAATAGGGATCTATTTTACTTTTCAATACAACCAATGA
*
34803838 CCCGATATAGTTAATAGGGATCTATTTTACTTTTCAATACAACCAATG
1 CCCGATACAGTTAATAGGGATCTATTTTACTTTTCAATACAACCAATG
34803886 TCTTAATTTC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (49 bp):
CCCGATACAGTTAATAGGGATCTATTTTACTTTTCAATACAACCAATGA
Found at i:34804239 original size:18 final size:19
Alignment explanation
Indices: 34804216--34804251 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
34804206 AATATTACAC
34804216 AATTCAA-TTTCACATTAA
1 AATTCAATTTTCACATTAA
34804234 AATTCAATTTTCACATTA
1 AATTCAATTTTCACATTA
34804252 TATTTTACTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.42, C:0.17, G:0.00, T:0.42
Consensus pattern (19 bp):
AATTCAATTTTCACATTAA
Found at i:34807674 original size:13 final size:13
Alignment explanation
Indices: 34807656--34807699 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
34807646 TAGTACACCC
34807656 TCAGTTGCACACT
1 TCAGTTGCACACT
*
34807669 TCAGTTAGTACACCT
1 TCAGTT-GCACA-CT
*
34807684 TTAGTTGCACACT
1 TCAGTTGCACACT
34807697 TCA
1 TCA
34807700 AACTTTCAAC
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
13 10 0.40
14 8 0.32
15 7 0.28
ACGTcount: A:0.25, C:0.27, G:0.14, T:0.34
Consensus pattern (13 bp):
TCAGTTGCACACT
Found at i:34807681 original size:14 final size:14
Alignment explanation
Indices: 34807650--34807699 Score: 50
Period size: 13 Copynumber: 3.6 Consensus size: 14
34807640 ACTAGTTAGT
*
34807650 ACACCCTCAGTTGC
1 ACACCTTCAGTTGC
*
34807664 ACA-CTTCAGTTAGT
1 ACACCTTCAGTT-GC
*
34807678 ACACCTTTAGTTGC
1 ACACCTTCAGTTGC
34807692 ACA-CTTCA
1 ACACCTTCA
34807700 AACTTTCAAC
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
13 11 0.38
14 11 0.38
15 7 0.24
ACGTcount: A:0.26, C:0.32, G:0.12, T:0.30
Consensus pattern (14 bp):
ACACCTTCAGTTGC
Found at i:34807689 original size:28 final size:28
Alignment explanation
Indices: 34807643--34807699 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
34807633 ATTCTAAACT
34807643 AGTTAGTACACCCTCAGTTGCACACTTC
1 AGTTAGTACACCCTCAGTTGCACACTTC
* *
34807671 AGTTAGTACACCTTTAGTTGCACACTTC
1 AGTTAGTACACCCTCAGTTGCACACTTC
34807699 A
1 A
34807700 AACTTTCAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.26, C:0.28, G:0.14, T:0.32
Consensus pattern (28 bp):
AGTTAGTACACCCTCAGTTGCACACTTC
Found at i:34810428 original size:23 final size:22
Alignment explanation
Indices: 34810391--34810442 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 22
34810381 AATAAAAATT
*
34810391 AAATATATTTGATATT-ATATTA
1 AAATAAATTTGATATTGATA-TA
34810413 AAATAAATATTGATATTGATATA
1 AAATAAAT-TTGATATTGATATA
*
34810436 AATTAAA
1 AAATAAA
34810443 AACTATTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 7 0.27
23 16 0.62
24 3 0.12
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (22 bp):
AAATAAATTTGATATTGATATA
Found at i:34811478 original size:12 final size:12
Alignment explanation
Indices: 34811461--34811492 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
34811451 TATTAAAATG
34811461 AATTAAAAACAA
1 AATTAAAAACAA
34811473 AATTAAAAACAA
1 AATTAAAAACAA
34811485 AATTAAAA
1 AATTAAAA
34811493 GCCAATTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.75, C:0.06, G:0.00, T:0.19
Consensus pattern (12 bp):
AATTAAAAACAA
Found at i:34812461 original size:46 final size:46
Alignment explanation
Indices: 34812411--34812583 Score: 217
Period size: 46 Copynumber: 3.7 Consensus size: 46
34812401 TGGTTGAGCA
*
34812411 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
34812457 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
34812504 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
34812550 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
34812584 GGGGCGGGTT
Statistics
Matches: 109, Mismatches: 11, Indels: 14
0.81 0.08 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 62 0.57
47 30 0.28
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:34812567 original size:93 final size:93
Alignment explanation
Indices: 34812408--34812579 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
34812398 GGATGGTTGA
* *
34812408 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
34812473 TGAGTCCGAGTTCATGAGATGTAACTAG
66 TGAGTCCGAGTTCATGAGATGTAACTAG
* * *
34812501 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
34812566 TGAGTCCGAGTTCA
66 TGAGTCCGAGTTCA
34812580 CTTAGGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCATGAGATGTAACTAG
Found at i:34816376 original size:80 final size:78
Alignment explanation
Indices: 34816197--34816416 Score: 226
Period size: 80 Copynumber: 2.8 Consensus size: 78
34816187 TCGTTCAAGT
* * * * *
34816197 GCCTTCGGGACATAGCCCGGTTTTAGTAACTCAGACAATGCCTTCGGGACATAACCCGGATTTAA
1 GCCTTCGGGACTTAACCCGGATTTAGT-ACTCACACAATGCCTTCGGGACTTAACCCGGATTTAA
* *
34816262 CAACTCGCACGAAT
65 CAACTCGCACAAAG
34816276 GCCTTCGGGACTTAACCCGGATTTAGTATCTCACACGAATGCCTTCGGGACTTAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATTTAGTA-CTCACAC-AATGCCTTCGGGACTTAACCCGGATTTA
** *
34816341 GTATCTCGCACAAAG
64 ACAACTCGCACAAAG
** * * * * *
34816356 GCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGA-CTTAACCCGGATTTAGT-ACTCA-CACAATGCCTTCGGGACTTAACCCGGA
34816417 CAGCATTCAA
Statistics
Matches: 119, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
78 1 0.01
79 33 0.28
80 81 0.68
81 4 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
GCCTTCGGGACTTAACCCGGATTTAGTACTCACACAATGCCTTCGGGACTTAACCCGGATTTAAC
AACTCGCACAAAG
Found at i:34816377 original size:40 final size:40
Alignment explanation
Indices: 34816196--34816363 Score: 214
Period size: 40 Copynumber: 4.2 Consensus size: 40
34816186 CTCGTTCAAG
* * * *
34816196 TGCCTTCGGGACATAGCCCGGTTTTAGTAACTCAG-AC-AA
1 TGCCTTCGGGACTTAACCCGGATTTAGTATCTC-GCACGAA
* ** *
34816235 TGCCTTCGGGACATAACCCGGATTTAACAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACGAA
*
34816275 TGCCTTCGGGACTTAACCCGGATTTAGTATCTCACACGAA
1 TGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACGAA
*
34816315 TGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACGAA
*
34816355 GGCCTTCGG
1 TGCCTTCGG
34816364 ATCTTAGTCC
Statistics
Matches: 115, Mismatches: 12, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
38 1 0.01
39 31 0.27
40 83 0.72
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACGAA
Found at i:34816425 original size:41 final size:41
Alignment explanation
Indices: 34816348--34816425 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
34816338 TTAGTATCTC
* * *
34816348 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
34816389 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
34816426 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:34824246 original size:40 final size:40
Alignment explanation
Indices: 34824064--34824286 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
34824054 TCCTCGTTCA
* * * * *
34824064 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
34824103 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
34824143 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
34824183 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
34824223 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
34824263 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
34824287 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 115 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:34824295 original size:41 final size:41
Alignment explanation
Indices: 34824218--34824295 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
34824208 TTAGTATCTC
* * *
34824218 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
34824259 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
34824296 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:34827544 original size:39 final size:40
Alignment explanation
Indices: 34827332--34827553 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
34827322 TTGAATGCTG
* * * * * *
34827332 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
34827372 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
34827412 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
34827452 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
*
34827492 TCCGGGTT-AGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
34827530 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
34827554 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
38 18 0.11
39 30 0.19
40 103 0.65
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:34827573 original size:78 final size:80
Alignment explanation
Indices: 34827407--34827588 Score: 226
Period size: 78 Copynumber: 2.3 Consensus size: 80
34827397 GTGCGAGATA
* * *
34827407 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
34827472 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * *
34827487 TTAAATCCGGGTT-AGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
34827550 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
34827565 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
34827589 TACGTGATTT
Statistics
Matches: 87, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
77 4 0.05
78 56 0.64
79 15 0.17
80 12 0.14
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:34835308 original size:40 final size:40
Alignment explanation
Indices: 34835278--34835447 Score: 216
Period size: 40 Copynumber: 4.3 Consensus size: 40
34835268 GGACTAAGAT
* *
34835278 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* *
34835318 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* ** *
34835358 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* * * * *
34835398 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
34835437 CCGAAGGCATT
1 CCGAAGGCATT
34835448 TGAACGAGGA
Statistics
Matches: 118, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 33 0.28
40 85 0.72
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
Found at i:34835362 original size:80 final size:79
Alignment explanation
Indices: 34835225--34835449 Score: 254
Period size: 80 Copynumber: 2.8 Consensus size: 79
34835215 TTGAATGCTG
* * * * * * *
34835225 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTAATAAATCCGGGCTAAG-TCCCGAAGGCATT
34835289 TGTGCGAGATACTAAA
64 TGTGCGAGATACTAAA
* * *
34835305 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTT
* **
34835370 GTGCGAGTTGTTAAA
65 GTGCGAGATACTAAA
* * * * *
34835385 TCCGGGTTACGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTTG
34835450 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
79 36 0.29
80 83 0.67
81 4 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:34835467 original size:79 final size:80
Alignment explanation
Indices: 34835300--34835482 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
34835290 GTGCGAGATA
* * *
34835300 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
34835365 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
34835380 TTAAATCCGGGTTACGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
34835444 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
34835459 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
34835483 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:34838004 original size:91 final size:91
Alignment explanation
Indices: 34837879--34838086 Score: 317
Period size: 91 Copynumber: 2.3 Consensus size: 91
34837869 TTGATTTTAG
* *
34837879 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATTAAGAATTTTATGAAATTACATATCATTATTAAATTAT
* *
34837944 ATTTAATATTAATTATTTTAAATTGTA
65 ATGTAATATTAATTATTTTAAATTATA
*
34837971 TAAATTCATATAAGAAAATTTATTATTAAGAATTTTATGAAATTACATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATTAAGAATTTTATGAAATTACATATCATTATTAAATTATA
*
34838036 TGTAATATTTATTATTTTAAATTATA
66 TGTAATATTAATTATTTTAAATTATA
* * * *
34838062 CAAATTCATAAAATATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
34838087 GTTATAATTA
Statistics
Matches: 106, Mismatches: 10, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
91 90 0.85
92 16 0.15
ACGTcount: A:0.45, C:0.03, G:0.04, T:0.48
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATTAAGAATTTTATGAAATTACATATCATTATTAAATTATA
TGTAATATTAATTATTTTAAATTATA
Found at i:34838006 original size:44 final size:44
Alignment explanation
Indices: 34837879--34838015 Score: 118
Period size: 47 Copynumber: 3.0 Consensus size: 44
34837869 TTGATTTTAG
*
34837879 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTA
1 TAAATTCATATAAGAA-AATTTATTATTAAGAATTTTA-GAAATTA
* * * ** *
34837925 TATA-TCATTATTAA-ATTATATTTAATATTAATTATTTTA-AATTGTA
1 TAAATTCA-TA-TAAGA--AAATTTATTATTAAGAATTTTAGAAAT-TA
34837971 TAAATTCATATAAGAAAATTTATTATTAAGAATTTTATGAAATTA
1 TAAATTCATATAAGAAAATTTATTATTAAGAATTTTA-GAAATTA
34838016 CATATTATTA
Statistics
Matches: 69, Mismatches: 13, Indels: 19
0.68 0.13 0.19
Matches are distributed among these distances:
44 18 0.26
45 11 0.16
46 17 0.25
47 22 0.32
48 1 0.01
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (44 bp):
TAAATTCATATAAGAAAATTTATTATTAAGAATTTTAGAAATTA
Found at i:34838228 original size:120 final size:120
Alignment explanation
Indices: 34838102--34838394 Score: 466
Period size: 120 Copynumber: 2.4 Consensus size: 120
34838092 AATTATTTTA
* * *
34838102 AATTTTATTAAATCATATATTTTAATT-TAAATATATTTAATATTAATTAT-TTCAAATTT-TCT
1 AATTTTATTAAATTATATATTTTAATTAT-AATATATTTAATAATAATTATGTT--AATTTATAT
*
34838164 TTTATAGTATCATATATTATGATTTGAATAAATTCATATAAGAATAATAATTATTAAG
63 TTTACAGTATCATATATTATGATTTGAATAAATTCATATAAGAATAATAATTATTAAG
34838222 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
* * *
34838287 ACAGTATCATATATTATGATTTGAGTAAATTCATGTAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTGAATAAATTCATATAAGAATAATAATTATTAAG
*
34838342 AATTTTATTAAATTATATAATTTAATTATAATATATTTAATAATAATTATGTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
34838395 TAAATATGAT
Statistics
Matches: 162, Mismatches: 8, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
119 5 0.03
120 154 0.95
121 3 0.02
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
ACAGTATCATATATTATGATTTGAATAAATTCATATAAGAATAATAATTATTAAG
Found at i:34838262 original size:15 final size:15
Alignment explanation
Indices: 34838227--34838278 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
34838217 TTAAGAATTT
*
34838227 TATTAAATTAT-ATA
1 TATTTAATTATAATA
34838241 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
34838255 TATTTAATAATAAT-
1 TATTTAATTATAATA
34838269 TATGTTAATT
1 TAT-TTAATT
34838279 TATATTTTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:34838381 original size:15 final size:15
Alignment explanation
Indices: 34838347--34838388 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
34838337 TTAAGAATTT
*
34838347 TATTAAATTAT-ATA
1 TATTTAATTATAATA
34838361 -ATTTAATTATAATA
1 TATTTAATTATAATA
*
34838375 TATTTAATAATAAT
1 TATTTAATTATAAT
34838389 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 3 0.12
15 12 0.50
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:34838501 original size:155 final size:157
Alignment explanation
Indices: 34838331--34838645 Score: 553
Period size: 155 Copynumber: 2.0 Consensus size: 157
34838321 GTAAGAATAT
*
34838331 TAATTATTAAGAATTTTATTAAATTATATAATTTAATTATAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATAATTTAATTAAAATATATTTAATAATAATTATGTTT
* * *
34838396 AAATATGATTAACTTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAAC-A
66 AAATATAATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
34838460 -AATAATTTACCAAAACAAATTTCTGC
131 TAATAATTTACCAAAACAAATTTATGC
*
34838486 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATAATTTAATTAAAATATATTTAATAATAATTATGTTT
34838551 AAATATAATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATAATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
34838616 TAATCATTTACCAAAACAAATTTATGC
131 TAATAATTTACCAAAACAAATTTATGC
34838643 TAA
1 TAA
34838646 GGGTATTCTA
Statistics
Matches: 151, Mismatches: 7, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
155 123 0.81
156 1 0.01
157 27 0.18
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (157 bp):
TAATTATTAAGAATTTTATTAAATTATATAATTTAATTAAAATATATTTAATAATAATTATGTTT
AAATATAATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
TAATAATTTACCAAAACAAATTTATGC
Found at i:34838526 original size:18 final size:17
Alignment explanation
Indices: 34838498--34838532 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
34838488 ATTATTAAGA
*
34838498 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
34838515 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
34838533 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:34838743 original size:44 final size:45
Alignment explanation
Indices: 34838693--34838787 Score: 129
Period size: 45 Copynumber: 2.1 Consensus size: 45
34838683 TTACACCTCT
**
34838693 ATTACATTCAACCAAACACAGGA-TTACTATTATGCCTCTATTCC
1 ATTACATTCAACCAAACACAGGATTTACTATTACACCTCTATTCC
*** *
34838737 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACACAGGATTTACTATTACACCTCTATTCC
34838782 ATTACA
1 ATTACA
34838788 CCTCTAATCC
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 20 0.45
45 24 0.55
ACGTcount: A:0.34, C:0.26, G:0.06, T:0.34
Consensus pattern (45 bp):
ATTACATTCAACCAAACACAGGATTTACTATTACACCTCTATTCC
Found at i:34838787 original size:16 final size:16
Alignment explanation
Indices: 34838768--34838819 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
34838758 GATTTGCTAT
* *
34838768 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
34838784 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
34838800 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
34838816 TACA
1 TACA
34838820 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:34843583 original size:34 final size:34
Alignment explanation
Indices: 34843540--34843609 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
34843530 CTTGTATGTA
34843540 TGATTATATTGGCAACATTGCATGGTGGATCCAT
1 TGATTATATTGGCAACATTGCATGGTGGATCCAT
34843574 TGATTATATTGGCAACATTGCATGGTGGATCCAT
1 TGATTATATTGGCAACATTGCATGGTGGATCCAT
34843608 TG
1 TG
34843610 GACATAGTTG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.36
Consensus pattern (34 bp):
TGATTATATTGGCAACATTGCATGGTGGATCCAT
Found at i:34844263 original size:12 final size:12
Alignment explanation
Indices: 34844248--34844273 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
34844238 GTAATGGACA
34844248 TTGGACATTTAT
1 TTGGACATTTAT
34844260 TTGGACATTTAT
1 TTGGACATTTAT
34844272 TT
1 TT
34844274 TGGTGATGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.08, G:0.15, T:0.54
Consensus pattern (12 bp):
TTGGACATTTAT
Found at i:34855726 original size:29 final size:29
Alignment explanation
Indices: 34855694--34855764 Score: 99
Period size: 29 Copynumber: 2.4 Consensus size: 29
34855684 TGTTGTCACC
* *
34855694 ATCCCTTTTTATAATCGATAGCCGAAGCT-
1 ATCCCTTTTCATAATCAATAGCCGAAG-TA
*
34855723 ATCCCTTTTCATATTCAATAGCCGAAGTA
1 ATCCCTTTTCATAATCAATAGCCGAAGTA
34855752 ATCCCTTTTCATA
1 ATCCCTTTTCATA
34855765 GTTGATGATC
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
28 1 0.03
29 37 0.97
ACGTcount: A:0.28, C:0.25, G:0.10, T:0.37
Consensus pattern (29 bp):
ATCCCTTTTCATAATCAATAGCCGAAGTA
Found at i:34861940 original size:39 final size:40
Alignment explanation
Indices: 34861823--34862045 Score: 248
Period size: 39 Copynumber: 5.7 Consensus size: 40
34861813 GCTCCTCGTT
* * *
34861823 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCACA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * * *
34861863 CAAATGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
34861903 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
34861942 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
34861981 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
34862022 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
34862046 CATCATTCAA
Statistics
Matches: 163, Mismatches: 12, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
38 2 0.01
39 89 0.55
40 61 0.37
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:34862000 original size:79 final size:80
Alignment explanation
Indices: 34861823--34862045 Score: 246
Period size: 79 Copynumber: 2.8 Consensus size: 80
34861813 GCTCCTCGTT
* * * * *
34861823 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCACACAAATGCCTTTGGGACTTAACCC
1 CAAATGCCTTC-GGACTTAGCCCGGAAT-TAGTAATCTCGCACAAATGCCTTCGGGACTTAGCCC
*
34861886 GGATTTAGTAACTCGCA
64 GGAATTAGTAACTCGCA
*
34861903 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGACTTAGCCCGGAATTAGTAATCTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
34861966 AATTAGTATCTCGCA
66 AATTAGTAACTCGCA
* * *
34861981 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCAC-AA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGA-CTTAGCCCGGA-ATTAGTAATC-TCGCACAAATGCCTTCGGGACTTAGCC
34862042 CGGA
63 CGGA
34862046 CATCATTCAA
Statistics
Matches: 125, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
78 46 0.37
79 58 0.46
80 21 0.17
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGACTTAGCCCGGAATTAGTAATCTCGCACAAATGCCTTCGGGACTTAGCCCGG
AATTAGTAACTCGCA
Found at i:34876185 original size:80 final size:78
Alignment explanation
Indices: 34876006--34876225 Score: 226
Period size: 80 Copynumber: 2.8 Consensus size: 78
34875996 TCGTTCAAGT
* * * * *
34876006 GCCTTCGGGACATAGCCCGGTTTTAGTAACTCAGACAATGCCTTCGGGACATAACCCGGATTTAA
1 GCCTTCGGGACTTAACCCGGATTTAGT-ACTCACACAATGCCTTCGGGACTTAACCCGGATTTAA
* *
34876071 CAACTCGCACGAAT
65 CAACTCGCACAAAG
34876085 GCCTTCGGGACTTAACCCGGATTTAGTATCTCACACGAATGCCTTCGGGACTTAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATTTAGTA-CTCACAC-AATGCCTTCGGGACTTAACCCGGATTTA
** *
34876150 GTATCTCGCACAAAG
64 ACAACTCGCACAAAG
** * * * * *
34876165 GCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGA-CTTAACCCGGATTTAGT-ACTCA-CACAATGCCTTCGGGACTTAACCCGGA
34876226 CAGCATTCAA
Statistics
Matches: 119, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
78 1 0.01
79 33 0.28
80 81 0.68
81 4 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
GCCTTCGGGACTTAACCCGGATTTAGTACTCACACAATGCCTTCGGGACTTAACCCGGATTTAAC
AACTCGCACAAAG
Found at i:34876186 original size:40 final size:40
Alignment explanation
Indices: 34876005--34876172 Score: 214
Period size: 40 Copynumber: 4.2 Consensus size: 40
34875995 CTCGTTCAAG
* * * *
34876005 TGCCTTCGGGACATAGCCCGGTTTTAGTAACTCAG-AC-AA
1 TGCCTTCGGGACTTAACCCGGATTTAGTATCTC-GCACGAA
* ** *
34876044 TGCCTTCGGGACATAACCCGGATTTAACAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACGAA
*
34876084 TGCCTTCGGGACTTAACCCGGATTTAGTATCTCACACGAA
1 TGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACGAA
*
34876124 TGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACGAA
*
34876164 GGCCTTCGG
1 TGCCTTCGG
34876173 ATCTTAGTCC
Statistics
Matches: 115, Mismatches: 12, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
38 1 0.01
39 31 0.27
40 83 0.72
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACGAA
Found at i:34876234 original size:41 final size:41
Alignment explanation
Indices: 34876157--34876234 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
34876147 TTAGTATCTC
* * *
34876157 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
34876198 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
34876235 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:34884078 original size:80 final size:80
Alignment explanation
Indices: 34883899--34884118 Score: 214
Period size: 80 Copynumber: 2.8 Consensus size: 80
34883889 TCGTTCAAGT
* * * * * * *
34883899 GCCTTCGGGACATAGCCCGGTTTTAGTAACTCAG-ACAATGCCTTCGGGACATAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATATAGTCACTTAGCACAATGCCTTCGGGACTTAACCCGGATTTA
* *
34883963 ACAACTCGCACGAAT
66 ACAACTCGCACAAAG
* *
34883978 GCCTTCGGGACTTAACCCGGATTTAGT-A-TCTCGCACGAATGCCTTCGGGACTTAACCCGGATT
1 GCCTTCGGGACTTAACCCGGATATAGTCACT-TAGCAC-AATGCCTTCGGGACTTAACCCGGATT
** *
34884041 TAGTATCTCGCACAAAG
64 TAACAACTCGCACAAAG
** * * *
34884058 GCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGA-CTTAACCCGGATATAGTCACTTAGCACAATGCCTTCGGGACTTAACCCGGA
34884119 CAGCATTCAA
Statistics
Matches: 117, Mismatches: 18, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
77 1 0.01
78 2 0.02
79 29 0.25
80 78 0.67
81 6 0.05
82 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATAGTCACTTAGCACAATGCCTTCGGGACTTAACCCGGATTTA
ACAACTCGCACAAAG
Found at i:34884079 original size:40 final size:40
Alignment explanation
Indices: 34883898--34884065 Score: 223
Period size: 40 Copynumber: 4.2 Consensus size: 40
34883888 CTCGTTCAAG
* * * *
34883898 TGCCTTCGGGACATAGCCCGGTTTTAGTAACTCAG-AC-AA
1 TGCCTTCGGGACTTAACCCGGATTTAGTATCTC-GCACGAA
* ** *
34883937 TGCCTTCGGGACATAACCCGGATTTAACAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACGAA
34883977 TGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACGAA
*
34884017 TGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACGAA
*
34884057 GGCCTTCGG
1 TGCCTTCGG
34884066 ATCTTAGTCC
Statistics
Matches: 117, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
38 1 0.01
39 31 0.26
40 85 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACGAA
Found at i:34884127 original size:41 final size:41
Alignment explanation
Indices: 34884050--34884127 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
34884040 TTAGTATCTC
* * *
34884050 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
34884091 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
34884128 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:34889885 original size:12 final size:12
Alignment explanation
Indices: 34889868--34889899 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
34889858 TATTAAAATG
34889868 AATTAAAAACAA
1 AATTAAAAACAA
34889880 AATTAAAAACAA
1 AATTAAAAACAA
34889892 AATTAAAA
1 AATTAAAA
34889900 GCCAATTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.75, C:0.06, G:0.00, T:0.19
Consensus pattern (12 bp):
AATTAAAAACAA
Found at i:34890868 original size:46 final size:46
Alignment explanation
Indices: 34890818--34890990 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
34890808 TGGTTGAGCA
*
34890818 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAATG
* * * *
34890864 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAA--ATG
* *
34890909 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGTGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAATG
* * *
34890957 CCCGAGCTCGTTGGGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
34890991 GGGGTGGGTT
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 58 0.55
47 28 0.26
48 4 0.04
50 6 0.06
ACGTcount: A:0.21, C:0.19, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAATG
Found at i:34890975 original size:93 final size:93
Alignment explanation
Indices: 34890815--34890985 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
34890805 GGATGGTTGA
*
34890815 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
*
34890880 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* ** * *
34890908 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGTGAATGCCCGAGCTCGTTGGGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
34890973 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
34890986 ACTTAGGGGT
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:34896469 original size:28 final size:29
Alignment explanation
Indices: 34896430--34896485 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 29
34896420 ACACGGGCGA
*
34896430 GGACACGAGCGTGT-CTAGGTCGTGTGAG
1 GGACACGAGCGTGTGCTAGGCCGTGTGAG
* *
34896458 GGACACGGGCGTGTGCTCGGCCGTGTGA
1 GGACACGAGCGTGTGCTAGGCCGTGTGA
34896486 AAACCCATGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 13 0.54
29 11 0.46
ACGTcount: A:0.14, C:0.21, G:0.45, T:0.20
Consensus pattern (29 bp):
GGACACGAGCGTGTGCTAGGCCGTGTGAG
Found at i:34907270 original size:14 final size:14
Alignment explanation
Indices: 34907251--34907278 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
34907241 ATAAATCTCT
34907251 AGTTAATGGTTCAA
1 AGTTAATGGTTCAA
34907265 AGTTAATGGTTCAA
1 AGTTAATGGTTCAA
34907279 CATACTTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.21, T:0.36
Consensus pattern (14 bp):
AGTTAATGGTTCAA
Found at i:34911277 original size:48 final size:48
Alignment explanation
Indices: 34911206--34911420 Score: 235
Period size: 48 Copynumber: 4.6 Consensus size: 48
34911196 GCCTCATGTT
* * * **
34911206 GATGCCATGTACCAGACATGGTCTTGCACTGGCTCATATAATGATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATGCC
* *
34911254 GATGCCATGTCCCAAACATGGTCTTACATTGGCTCACATAACAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATGCC
* * * *
34911302 AATGCCATGTCCCAGGCATGGTCTTACACTGGCTCACATAACAATACT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATGCC
* * * *
34911350 GATGCCATGTCCCAGACATGGTATTATAC-GG----GATCAC-ATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATGCC
* *
34911392 GATGCCATATCCCAGATATGGTCTTACAC
1 GATGCCATGTCCCAGACATGGTCTTACAC
34911421 GGTTACACAT
Statistics
Matches: 142, Mismatches: 25, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
42 28 0.20
43 4 0.03
47 2 0.01
48 108 0.76
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATGCC
Found at i:34918027 original size:45 final size:45
Alignment explanation
Indices: 34917975--34918121 Score: 138
Period size: 45 Copynumber: 3.2 Consensus size: 45
34917965 CCCAGACATG
34917975 GTCTTACATGGGATCACACATATCGAAGCTGATAACCCAGCTATA
1 GTCTTACATGGGATCACACATATCGAAGCTGATAACCCAGCTATA
* ** * * ** *
34918020 GTCTTACA--CGATGTTCTCATATCGATGCCAATGCCATGTCCCAGAC-ATG
1 GTCTTACATGGGAT-CACACATATCGAAG-C--TG--ATAACCCAG-CTATA
34918069 GTCTTACATGGGATCACACATATCGAAGCTGATAACCCAGCTATA
1 GTCTTACATGGGATCACACATATCGAAGCTGATAACCCAGCTATA
34918114 GTCTTACA
1 GTCTTACA
34918122 CGATGTTCTC
Statistics
Matches: 76, Mismatches: 16, Indels: 20
0.68 0.14 0.18
Matches are distributed among these distances:
43 3 0.04
44 11 0.14
45 26 0.34
47 4 0.05
49 18 0.24
50 11 0.14
51 3 0.04
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.27
Consensus pattern (45 bp):
GTCTTACATGGGATCACACATATCGAAGCTGATAACCCAGCTATA
Found at i:34918055 original size:94 final size:94
Alignment explanation
Indices: 34917945--34918179 Score: 454
Period size: 94 Copynumber: 2.5 Consensus size: 94
34917935 TGGGACCACT
34917945 TATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACACATATCGAAGCTGATAA
1 TATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACACATATCGAAGCTGATAA
34918010 CCCAGCTATAGTCTTACACGATGTTCTCA
66 CCCAGCTATAGTCTTACACGATGTTCTCA
34918039 TATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACACATATCGAAGCTGATAA
1 TATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACACATATCGAAGCTGATAA
34918104 CCCAGCTATAGTCTTACACGATGTTCTCA
66 CCCAGCTATAGTCTTACACGATGTTCTCA
*
34918133 TATCGATGCCAATGCCATGTCCCAAACATGGTCTTACAT-GGATCACA
1 TATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACA
34918180 TAACGATGCC
Statistics
Matches: 140, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
93 8 0.06
94 132 0.94
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (94 bp):
TATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACACATATCGAAGCTGATAA
CCCAGCTATAGTCTTACACGATGTTCTCA
Found at i:34918190 original size:47 final size:48
Alignment explanation
Indices: 34917903--34918272 Score: 289
Period size: 48 Copynumber: 7.8 Consensus size: 48
34917893 CATAGTAGGG
* * * ** * *
34917903 TGCCAATGCCATATCCCGGATATGGTCTTTTATGGGACCACTTATCGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGA
34917951 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACACATATCGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT--CACATATCGA
* ** * * * * *
34918001 AG-C--TG--ATAACCCAG-CTATAGTCTTACACGATGTTCTCATATCGA
1 TGCCAATGCCATGTCCCAGAC-ATGGTCTTACATG-GGATCACATATCGA
34918045 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACACATATCGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT--CACATATCGA
* ** * * * * *
34918095 AG-C--TG--ATAACCCAG-CTATAGTCTTACACGATGTTCTCATATCGA
1 TGCCAATGCCATGTCCCAGAC-ATGGTCTTACATG-GGATCACATATCGA
* *
34918139 TGCCAATGCCATGTCCCAAACATGGTCTTACAT-GGATCACATAACGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGA
34918186 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGA
* ** * * * *
34918234 TTCTGATGCCATATCCCAGATATGGTCTTATACGGGATC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
34918273 TCATCAACCT
Statistics
Matches: 251, Mismatches: 50, Indels: 42
0.73 0.15 0.12
Matches are distributed among these distances:
44 22 0.09
45 38 0.15
46 4 0.02
47 50 0.20
48 79 0.31
49 36 0.14
50 22 0.09
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (48 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGA
Found at i:34919101 original size:21 final size:21
Alignment explanation
Indices: 34919075--34919117 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
34919065 CTAAAGAGAG
*
34919075 AGGAAGATGGACACCATTTTA
1 AGGAAGATGGACACAATTTTA
34919096 AGGAAGATGGACACAATTTTA
1 AGGAAGATGGACACAATTTTA
34919117 A
1 A
34919118 CTTATTTTCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.42, C:0.12, G:0.23, T:0.23
Consensus pattern (21 bp):
AGGAAGATGGACACAATTTTA
Found at i:34919902 original size:104 final size:103
Alignment explanation
Indices: 34919632--34920170 Score: 440
Period size: 104 Copynumber: 5.2 Consensus size: 103
34919622 GATGAACTTA
* * * ** * * * *
34919632 GGTTGTGATCTTAACTCAACTAACCTTTAAACATCAGCTGGGAATGTAAGTCCACCGAGTTGTTT
1 GGTTGCGAGCTTAACTC-ACTAACCTTTAAGCATCAGCTGGGAACATAGGTCCA-CAAGCTATTT
34919697 TAGAGTTGCGAGCTTAACTT-AGCTAACTCAAATAACTAAG
64 TAGAGTTGCGAGCTTAA-TTCAGCTAACTCAAATAACTAAG
* *** * * *****
34919737 GGTTGTGAGCTTAACTCAGCTAACCTTTAAGCATCAG-TTAAAACTGTAGATTTGTGAGCTATTT
1 GGTTGCGAGCTTAACTCA-CTAACCTTTAAGCATCAGCTGGGAAC-ATAGGTCCACAAGCTATTT
* * * * * **
34919801 TAGAGTTGTGAGCTTGATTCAGTTAACTAAAATAAATTTG
64 TAGAGTTGCGAGCTTAATTCAGCTAACTCAAATAACTAAG
* * * **
34919841 GATTGCAAGCTTAACTCATCTAATCTTTAAGCATCAGCTGGGAACATAGGTCCACGGGCTATTTT
1 GGTTGCGAGCTTAACTCA-CTAACCTTTAAGCATCAGCTGGGAACATAGGTCCACAAGCTATTTT
* * **
34919906 AGAGTTACGAGCTTAACTCAGCTAACTCAAATAACTGGG
65 AGAGTTGCGAGCTTAATTCAGCTAACTCAAATAACTAAG
* * * * * * * *
34919945 GGTTGTGAGCTTAACTTAGCTAACCTTTAAGCATCAGCTGCGAACGTTGGTCCGCAAGCTGTTTC
1 GGTTGCGAGCTTAACTCA-CTAACCTTTAAGCATCAGCTGGGAACATAGGTCCACAAGCTATTTT
*
34920010 GGAGTTGCGAGCTTAACTT-AGCTAACTCAAATAACTAAG
65 AGAGTTGCGAGCTTAA-TTCAGCTAACTCAAATAACTAAG
* **** * *
34920049 GGTTGCGAGCTTAACTCGACTAACCTTTAAGCATTAGCTGGGAACATAGGTCTTTGAGTTGTTTT
1 GGTTGCGAGCTTAACTC-ACTAACCTTTAAGCATCAGCTGGGAACATAGGTCCACAAGCTATTTT
* * *
34920114 GGAGTTGCGAGTTTAATGT-AGCTAACTCAAATAACT-GG
65 AGAGTTGCGAGCTTAAT-TCAGCTAACTCAAATAACTAAG
*
34920152 AGGTTGCAAGCTTAACTCA
1 -GGTTGCGAGCTTAACTCA
34920171 AGTAACTTAA
Statistics
Matches: 347, Mismatches: 79, Indels: 18
0.78 0.18 0.04
Matches are distributed among these distances:
103 5 0.01
104 299 0.86
105 43 0.12
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (103 bp):
GGTTGCGAGCTTAACTCACTAACCTTTAAGCATCAGCTGGGAACATAGGTCCACAAGCTATTTTA
GAGTTGCGAGCTTAATTCAGCTAACTCAAATAACTAAG
Found at i:34920062 original size:208 final size:207
Alignment explanation
Indices: 34919632--34920170 Score: 589
Period size: 208 Copynumber: 2.6 Consensus size: 207
34919622 GATGAACTTA
* * * ** *
34919632 GGTTGTGATCTTAACTCAACTAACCTTTAAACATCAGCTGGGAATGTAAGTCCACCGAGTTGTTT
1 GGTTGCGAGCTTAACTC-ACTAACCTTTAAGCATCAGCTGGGAACATAGGTCCA-CGAGTTGTTT
**
34919697 TAGAGTTGCGAGCTTAACTTAGCTAACTCAAATAACTAAGGGTTGTGAGCTTAACTCAGCTAACC
64 TAGAGTTGCGAGCTTAACTTAGCTAACTCAAATAACTGGGGGTTGTGAGCTTAACTCAGCTAACC
* ** ** * * * *
34919762 TTTAAGCATCAGTTAAAACTGTAGATTTGTGAGCTATTTTAGAGTTGTGAGCTTGATTCAGTTAA
129 TTTAAGCATCAGTGAAAACTGTAGATCCGCAAGCTATTTCAGAGTTGCGAGCTTAATTCAGCTAA
**
34919827 CTAAAATAAATTTG
194 CTAAAATAAATAAG
* * * * * *
34919841 GATTGCAAGCTTAACTCATCTAATCTTTAAGCATCAGCTGGGAACATAGGTCCACGGGCTATTTT
1 GGTTGCGAGCTTAACTCA-CTAACCTTTAAGCATCAGCTGGGAACATAGGTCCACGAGTTGTTTT
* * *
34919906 AGAGTTACGAGCTTAACTCAGCTAACTCAAATAACTGGGGGTTGTGAGCTTAACTTAGCTAACCT
65 AGAGTTGCGAGCTTAACTTAGCTAACTCAAATAACTGGGGGTTGTGAGCTTAACTCAGCTAACCT
** * * * *
34919971 TTAAGCATCAGCTGCGAAC-GTTGGTCCGCAAGCTGTTTCGGAGTTGCGAGCTTAACTT-AGCTA
130 TTAAGCATCAG-TGAAAACTGTAGATCCGCAAGCTATTTCAGAGTTGCGAGCTTAA-TTCAGCTA
* *
34920034 ACTCAAATAACTAAG
193 ACTAAAATAAATAAG
* ***
34920049 GGTTGCGAGCTTAACTCGACTAACCTTTAAGCATTAGCTGGGAACATAGGTCTTTGAGTTGTTTT
1 GGTTGCGAGCTTAACTC-ACTAACCTTTAAGCATCAGCTGGGAACATAGGTCCACGAGTTGTTTT
* * * **
34920114 GGAGTTGCGAGTTTAA-TGTAGCTAACTCAAATAACTGGAGGTTGCAAGCTTAACTCA
65 AGAGTTGCGAGCTTAACT-TAGCTAACTCAAATAACTGGGGGTTGTGAGCTTAACTCA
34920171 AGTAACTTAA
Statistics
Matches: 271, Mismatches: 54, Indels: 11
0.81 0.16 0.03
Matches are distributed among these distances:
207 1 0.00
208 220 0.81
209 50 0.18
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (207 bp):
GGTTGCGAGCTTAACTCACTAACCTTTAAGCATCAGCTGGGAACATAGGTCCACGAGTTGTTTTA
GAGTTGCGAGCTTAACTTAGCTAACTCAAATAACTGGGGGTTGTGAGCTTAACTCAGCTAACCTT
TAAGCATCAGTGAAAACTGTAGATCCGCAAGCTATTTCAGAGTTGCGAGCTTAATTCAGCTAACT
AAAATAAATAAG
Done.