Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 111 of 316
Found at i:34946514 original size:24 final size:24
Alignment explanation
Indices: 34946482--34946533 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
34946472 GATCAATATC
* *
34946482 AAATATATTATGCTAATAAATGCT
1 AAATATATTATACTAATAAATACT
34946506 AAATATATTATACTAATAAATACT
1 AAATATATTATACTAATAAATACT
34946530 AAAT
1 AAAT
34946534 CTTCTAGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.52, C:0.08, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:34953513 original size:17 final size:18
Alignment explanation
Indices: 34953481--34953515 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
34953471 CCATGTGGCC
*
34953481 TGCCCGTGTGGGCCCACA
1 TGCCCATGTGGGCCCACA
34953499 TGCCCATGT-GGCCCACA
1 TGCCCATGTGGGCCCACA
34953516 CGACCCAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.14, C:0.40, G:0.29, T:0.17
Consensus pattern (18 bp):
TGCCCATGTGGGCCCACA
Found at i:34966805 original size:29 final size:29
Alignment explanation
Indices: 34966760--34966822 Score: 92
Period size: 29 Copynumber: 2.2 Consensus size: 29
34966750 AGCTTGGAAC
*
34966760 TGATTCGGGCCAGATGGGCCATATGAATG
1 TGATTCGGGCCAGATGGGCCATACGAATG
*
34966789 TGATTTGGGCCTA-ATGGGCCATACGAATG
1 TGATTCGGGCC-AGATGGGCCATACGAATG
34966818 TGATT
1 TGATT
34966823 GGACTTATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
29 30 0.97
30 1 0.03
ACGTcount: A:0.24, C:0.16, G:0.32, T:0.29
Consensus pattern (29 bp):
TGATTCGGGCCAGATGGGCCATACGAATG
Found at i:34970633 original size:29 final size:29
Alignment explanation
Indices: 34970592--34970658 Score: 111
Period size: 29 Copynumber: 2.3 Consensus size: 29
34970582 ACATGGCTTG
34970592 GAAT-TGATTTGGGCC-AGATGGGCCATAT
1 GAATGTGATTTGGGCCTA-ATGGGCCATAT
34970620 GAATGTGATTTGGGCCTAATGGGCCATAT
1 GAATGTGATTTGGGCCTAATGGGCCATAT
34970649 GAATGTGATT
1 GAATGTGATT
34970659 GGACTTATTT
Statistics
Matches: 37, Mismatches: 0, Indels: 3
0.93 0.00 0.08
Matches are distributed among these distances:
28 4 0.11
29 32 0.86
30 1 0.03
ACGTcount: A:0.25, C:0.12, G:0.31, T:0.31
Consensus pattern (29 bp):
GAATGTGATTTGGGCCTAATGGGCCATAT
Found at i:34971986 original size:16 final size:17
Alignment explanation
Indices: 34971954--34971986 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
34971944 TTTAAAGAAG
34971954 GGTTTTCAATGAAAACAA
1 GGTTTTCAA-GAAAACAA
34971972 GGTTTTCAA-AAAACA
1 GGTTTTCAAGAAAACA
34971987 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.45, C:0.12, G:0.15, T:0.27
Consensus pattern (17 bp):
GGTTTTCAAGAAAACAA
Found at i:34972655 original size:198 final size:199
Alignment explanation
Indices: 34972307--34972704 Score: 717
Period size: 198 Copynumber: 2.0 Consensus size: 199
34972297 GGTATCATCT
*
34972307 CAGGCTAAAGAAAATCTGAAGGCACTAGATGCTCACCGTTCACTTGCTGACAAATAAAAAACTTT
1 CAGGCTAAAGAAAATCTGAAGGCACTAGATGCTCACCATTCACTTGCTGACAAATAAAAAACTTT
*
34972372 GATACAAAATCAGAAATTTCTCATTTCATACTCGACCACCAATACGACTTCTTCAAATAATTGTA
66 GATACAAAATCAGAAATTTCTCATTTCATACCCGACCACCAATACGACTTCTTCAAATAATTGTA
*
34972437 CATTTTGGTACTCTCCGGGTGAACAGATAAACTACTACTATGTGCCTCGTGCAAAATTTTCTGAA
131 CATTTTGGTACTCTCCGGGTGAACAGATAAACTACTACTATATGCCTCGTGCAAAATTTTCTGAA
34972502 TCAA
196 TCAA
* * * *
34972506 CAGGCTAAA-AAAATCTGAAGGCACTTGATGCTCAGCATTCACTTGCTGAGAAATCAAAAACTTT
1 CAGGCTAAAGAAAATCTGAAGGCACTAGATGCTCACCATTCACTTGCTGACAAATAAAAAACTTT
*
34972570 GATACAAAATCAGAAATTTCTCATTTCATACCCGACCACCAATACGACTTCTTCAAATCATTGTA
66 GATACAAAATCAGAAATTTCTCATTTCATACCCGACCACCAATACGACTTCTTCAAATAATTGTA
34972635 CATTTTGGTACTCTCCGGGTGAACAGATAAACTACTACTATATGCCTCGTGCAAAATTTTCTGAA
131 CATTTTGGTACTCTCCGGGTGAACAGATAAACTACTACTATATGCCTCGTGCAAAATTTTCTGAA
34972700 TCAA
196 TCAA
34972704 C
1 C
34972705 TCTAGATTTT
Statistics
Matches: 191, Mismatches: 8, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
198 182 0.95
199 9 0.05
ACGTcount: A:0.35, C:0.23, G:0.14, T:0.29
Consensus pattern (199 bp):
CAGGCTAAAGAAAATCTGAAGGCACTAGATGCTCACCATTCACTTGCTGACAAATAAAAAACTTT
GATACAAAATCAGAAATTTCTCATTTCATACCCGACCACCAATACGACTTCTTCAAATAATTGTA
CATTTTGGTACTCTCCGGGTGAACAGATAAACTACTACTATATGCCTCGTGCAAAATTTTCTGAA
TCAA
Found at i:34978341 original size:29 final size:29
Alignment explanation
Indices: 34978278--34978345 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
34978268 TAATCAACCG
*
34978278 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
34978307 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
34978336 CGCACACTTA
1 CGCACACTTA
34978346 CCTTTTTCCG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:34978635 original size:174 final size:174
Alignment explanation
Indices: 34978167--34978669 Score: 934
Period size: 175 Copynumber: 2.9 Consensus size: 174
34978157 AACTCAAGGT
* *
34978167 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
34978232 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
34978297 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
34978341 ACTTACCTTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCTTTAATGTAAATAATTTAT
1 ACTTACC-TTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTAT
*
34978406 AGAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCACACACTTAGTGCCATG
65 AGAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATG
*
34978471 TACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTTGCAC
130 TACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
34978516 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTACA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
34978581 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
*
34978646 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
34978670 TGTACAATTT
Statistics
Matches: 319, Mismatches: 9, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
174 150 0.47
175 169 0.53
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:34978661 original size:29 final size:30
Alignment explanation
Indices: 34978627--34978699 Score: 93
Period size: 29 Copynumber: 2.5 Consensus size: 30
34978617 TAATCAACCG
34978627 CGCACACTTAGTGCCATGTAC-TTT-AAAC
1 CGCACACTTAGTGCCATGTACATTTAAAAC
34978655 TCGCACACTTAGTG-C-TGTACAATTTAAAAC
1 -CGCACACTTAGTGCCATGTAC-ATTTAAAAC
34978685 CGCACA-TTAGTGCCA
1 CGCACACTTAGTGCCA
34978700 ATCTCATGAC
Statistics
Matches: 39, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
27 5 0.13
28 7 0.18
29 23 0.59
30 4 0.10
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (30 bp):
CGCACACTTAGTGCCATGTACATTTAAAAC
Found at i:34986655 original size:29 final size:29
Alignment explanation
Indices: 34986592--34986659 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
34986582 TAATCAACCG
*
34986592 CGCACACTTAATGCCATGTACTTTAAACT
1 CGCACACTTAATGCCATGCACTTTAAACT
* * **
34986621 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAATGCCATGCACTTT-AAACT
34986650 CGCACACTTA
1 CGCACACTTA
34986660 CCTTTTTCCG
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
28 3 0.09
29 29 0.91
ACGTcount: A:0.29, C:0.29, G:0.12, T:0.29
Consensus pattern (29 bp):
CGCACACTTAATGCCATGCACTTTAAACT
Found at i:34986830 original size:29 final size:29
Alignment explanation
Indices: 34986767--34986834 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
34986757 TAATCAACCG
*
34986767 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
34986796 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
34986825 CGCACACTTA
1 CGCACACTTA
34986835 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:34986975 original size:29 final size:30
Alignment explanation
Indices: 34986936--34987014 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
34986926 CTTAATAATC
34986936 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
34986966 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
34986995 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
34987015 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:34987008 original size:174 final size:174
Alignment explanation
Indices: 34986481--34986983 Score: 961
Period size: 175 Copynumber: 2.9 Consensus size: 174
34986471 AACTCAAGGT
* *
34986481 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
34986546 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAATGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
34986611 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
34986655 ACTTACCTTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTAT
1 ACTTACC-TTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTAT
34986720 AGAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATG
65 AGAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATG
34986785 TACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
130 TACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
34986830 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
34986895 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
*
34986960 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
34986984 TGTACAATTT
Statistics
Matches: 324, Mismatches: 4, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
174 153 0.47
175 171 0.53
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:34989053 original size:93 final size:93
Alignment explanation
Indices: 34988942--34989114 Score: 276
Period size: 93 Copynumber: 1.9 Consensus size: 93
34988932 CGCCCATAAG
* * *
34988942 CGAACTCAGACTCAACTCAATGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCAGACTCAACTCAACGAGCTC-GGACGTTCGCATCCATAAGTGAAATCAGACTCAACTC
34989006 AACGAGTTCGGATGCCAAGTTACATTTCA
65 AACGAGTTCGGATGCCAAGTTACATTTCA
* *
34989035 CGAACTCAGACTCAACTCAACGAGTTCGGATGTTCGCATCCATAAGTGAAATCAGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAAATCAGACTCAACTCA
*
34989100 ATGAGTTCGGATGCC
66 ACGAGTTCGGATGCC
34989115 CAAATATCCG
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAAATCAGACTCAACTCA
ACGAGTTCGGATGCCAAGTTACATTTCA
Found at i:34989107 original size:46 final size:46
Alignment explanation
Indices: 34988935--34989112 Score: 177
Period size: 46 Copynumber: 3.8 Consensus size: 46
34988925 TGTAACTCGC
* * *
34988935 CCATAAGCGAACTCAGACTCAACTCAATGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGTTC-GGATGTTCGCAT
* *
34988981 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG--C-CAAGTT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGTTCGGATGTTCGC-A--T
* *
34989027 ACATTTCA-CGAACTCAGACTCAACTCAACGAGTTCGGATGTTCGCAT
1 CCA--TAAGCGAACTCAGACTCAACTCAACGAGTTCGGATGTTCGCAT
* * *
34989074 CCATAAGTGAAATCAGACTCAACTCAATGAGTTCGGATG
1 CCATAAGCGAACTCAGACTCAACTCAACGAGTTCGGATG
34989113 CCCAAATATC
Statistics
Matches: 108, Mismatches: 14, Indels: 20
0.76 0.10 0.14
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 4 0.04
46 63 0.58
47 33 0.31
48 2 0.02
49 2 0.02
50 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCAGACTCAACTCAACGAGTTCGGATGTTCGCAT
Found at i:35008633 original size:40 final size:40
Alignment explanation
Indices: 35008535--35008841 Score: 449
Period size: 40 Copynumber: 7.7 Consensus size: 40
35008525 ATGATAACCA
* * * * **
35008535 GGCTAAGTCCCGAAGGCATCTGCGCTAGTGACTAGTTCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
*
35008575 GGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCA
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
35008614 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
*
35008654 GGCTAAGTCCCGAAAGCATTTGTGCGAGTTACTAAATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
*
35008694 GGCTAAGTCCCGAAGGCATTTGTGCGAATTACTAAATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
*
35008734 GGCTAAGTCCCGAAGGCATTTTTGCGAGTTACTAAATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
* * *
35008774 GGCTAAGTCCCGAAGGCAATTGTGCGAGTTTCTCTAA-CCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAATCCG
* *
35008814 GGCTATGTCCC-AAGGCATTTGAGCGAGT
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGT
35008842 AGCTATATCC
Statistics
Matches: 245, Mismatches: 20, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
39 47 0.19
40 196 0.80
41 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
Found at i:35012439 original size:18 final size:18
Alignment explanation
Indices: 35012416--35012454 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
35012406 ACATCAGAGA
* *
35012416 AAGTGTCATGCGCATAGG
1 AAGTGTCATGCACATAAG
35012434 AAGTGTCATGCACATAAG
1 AAGTGTCATGCACATAAG
35012452 AAG
1 AAG
35012455 GGGGTACCGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.36, C:0.15, G:0.28, T:0.21
Consensus pattern (18 bp):
AAGTGTCATGCACATAAG
Found at i:35013404 original size:26 final size:26
Alignment explanation
Indices: 35013375--35013525 Score: 106
Period size: 27 Copynumber: 5.7 Consensus size: 26
35013365 CTAGTTTACC
* *
35013375 AAATTACTGAAATACCCCCAGTTGTG
1 AAATTACCGAAATACCCCCAGTTGTA
* *
35013401 AAATTACC-AAAGTACCCCCGATTTATA
1 AAATTACCGAAA-TACCCCC-AGTTGTA
* * * *
35013428 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACCGAAATA-CCCCCAGTTGTA
* *
35013455 AAATTACCGAAATACCCTCAGTTTGCA
1 AAATTACCGAAATACCCCCAG-TTGTA
* * * *
35013482 AAATTACTGAAATGCCCTCGATTTGTA
1 AAATTACCGAAATACCC-CCAGTTGTA
* *
35013509 AAATTGCAGAAATACCC
1 AAATTACCGAAATACCC
35013526 TCGACTTGCA
Statistics
Matches: 97, Mismatches: 22, Indels: 11
0.75 0.17 0.08
Matches are distributed among these distances:
25 3 0.03
26 17 0.18
27 70 0.72
28 7 0.07
ACGTcount: A:0.38, C:0.23, G:0.11, T:0.28
Consensus pattern (26 bp):
AAATTACCGAAATACCCCCAGTTGTA
Found at i:35013431 original size:27 final size:26
Alignment explanation
Indices: 35013375--35013569 Score: 88
Period size: 27 Copynumber: 7.3 Consensus size: 26
35013365 CTAGTTTACC
* * * *
35013375 AAATTACTGAAATACCCCC-AGTTGTG
1 AAATTAC-CAAATACCCCCGATTTATA
35013401 AAATTACCAAAGTACCCCCGATTTATA
1 AAATTACCAAA-TACCCCCGATTTATA
* * *
35013428 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTA-CCAAATACCCCCGATTTATA
* **
35013455 AAATTACCGAAATACCCTC-AGTTTGCA
1 AAATTACC-AAATACCCCCGA-TTTATA
* * * *
35013482 AAATTACTGAAATGCCCTCGATTTGTA
1 AAATTAC-CAAATACCCCCGATTTATA
* * * * **
35013509 AAATTGCAGAAATACCCTCGACTTGCA
1 AAATTAC-CAAATACCCCCGATTTATA
* **
35013536 AAATTTCCAAAGTACCATCGATTTATA
1 AAATTACCAAA-TACCCCCGATTTATA
*
35013563 GAATTAC
1 AAATTAC
35013570 TGTTATACCC
Statistics
Matches: 136, Mismatches: 25, Indels: 15
0.77 0.14 0.09
Matches are distributed among these distances:
25 3 0.02
26 20 0.15
27 107 0.79
28 6 0.04
ACGTcount: A:0.37, C:0.23, G:0.11, T:0.29
Consensus pattern (26 bp):
AAATTACCAAATACCCCCGATTTATA
Found at i:35013471 original size:54 final size:54
Alignment explanation
Indices: 35013367--35013525 Score: 144
Period size: 54 Copynumber: 3.0 Consensus size: 54
35013357 AAAATACTCT
* ** * * *
35013367 AGTTTACCAAATTACTGAAATACCC-CCAGTTGTGAAATTACC-AAAGTACCCCC
1 AGTTTACAAAATTACCCAAATACCCTCGATTTGTAAAATTACCGAAA-TACCCCC
* * *
35013420 -GATTTATAAAATTACCCAAATATCCTCGATTTGTAAAATTACCGAAATACCCTC
1 AG-TTTACAAAATTACCCAAATACCCTCGATTTGTAAAATTACCGAAATACCCCC
* ** * * *
35013474 AGTTTGCAAAATTACTGAAATGCCCTCGATTTGTAAAATTGCAGAAATACCC
1 AGTTTACAAAATTACCCAAATACCCTCGATTTGTAAAATTACCGAAATACCC
35013526 TCGACTTGCA
Statistics
Matches: 85, Mismatches: 17, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
52 1 0.01
53 18 0.21
54 62 0.73
55 4 0.05
ACGTcount: A:0.37, C:0.23, G:0.11, T:0.28
Consensus pattern (54 bp):
AGTTTACAAAATTACCCAAATACCCTCGATTTGTAAAATTACCGAAATACCCCC
Found at i:35013522 original size:81 final size:80
Alignment explanation
Indices: 35013375--35013540 Score: 183
Period size: 81 Copynumber: 2.1 Consensus size: 80
35013365 CTAGTTTACC
* *
35013375 AAATTACTGAAATACCCCCAGTTGTGAAATTACCAAAGTACCCCCGATTTATAAAATTACCCAAA
1 AAATTACCGAAATACCCCCAGTTGTGAAATTACCAAAGTACCCCCGATTTATAAAATTACACAAA
* * *
35013440 TATCCTCGATTTGTA
66 TACCCTCGACTTGCA
* * * * * * *
35013455 AAATTACCGAAATACCCTCAGTT-TGCAAAATTACTGAAA-TGCCCTCGATTTGTAAAATTGCAG
1 AAATTACCGAAATACCCCCAGTTGTG--AAATTAC-CAAAGTACCCCCGATTTATAAAATTACAC
35013518 AAATACCCTCGACTTGCA
63 AAATACCCTCGACTTGCA
35013536 AAATT
1 AAATT
35013541 TCCAAAGTAC
Statistics
Matches: 71, Mismatches: 12, Indels: 5
0.81 0.14 0.06
Matches are distributed among these distances:
79 2 0.03
80 21 0.30
81 45 0.63
82 3 0.04
ACGTcount: A:0.37, C:0.23, G:0.11, T:0.28
Consensus pattern (80 bp):
AAATTACCGAAATACCCCCAGTTGTGAAATTACCAAAGTACCCCCGATTTATAAAATTACACAAA
TACCCTCGACTTGCA
Found at i:35013557 original size:54 final size:54
Alignment explanation
Indices: 35013427--35013569 Score: 148
Period size: 54 Copynumber: 2.6 Consensus size: 54
35013417 CCCGATTTAT
* * *
35013427 AAAATTACCCAAATATCC-TCGATTTGTAAAATTACCGAAATACCCTCAGTTTGC
1 AAAATTACTCAAATA-CCATCGATTTGTAAAATTACAGAAATACCCTCAGCTTGC
* * * *
35013481 AAAATTACTGAAATGCCCTCGATTTGTAAAATTGCAGAAATACCCTC-GACTTGC
1 AAAATTACTCAAATACCATCGATTTGTAAAATTACAGAAATACCCTCAG-CTTGC
* * *
35013535 AAAATTTC-CAAAGTACCATCGATTTATAGAATTAC
1 AAAATTACTCAAA-TACCATCGATTTGTAAAATTAC
35013570 TGTTATACCC
Statistics
Matches: 73, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
53 6 0.08
54 67 0.92
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.29
Consensus pattern (54 bp):
AAAATTACTCAAATACCATCGATTTGTAAAATTACAGAAATACCCTCAGCTTGC
Found at i:35013647 original size:81 final size:80
Alignment explanation
Indices: 35013548--35013836 Score: 400
Period size: 81 Copynumber: 3.6 Consensus size: 80
35013538 ATTTCCAAAG
* * * * ** ** *
35013548 TACCATCGATTTATAGAATTACTGTTATACCCTTGATTTATAGAATTATTGTTTTACTATCGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCAATTTATAGAATTATCATTTTACTCTCGATT
35013613 TATAAAATTACCATTT
66 TA-AAAATTACCATTT
* * *
35013629 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCAATTTATAGAATTATCATTTTACTCTCGATT
35013694 TAAAGAATTACCATTT
66 TAAA-AATTACCATTT
* *
35013710 TACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTATAGAATTATCATTTTACTCTCGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCAATTTATAGAATTATCATTTTACTCTCGATT
*
35013775 TACAAAATTATCATTT
66 TA-AAAATTACCATTT
*
35013791 TACCCTCAATTTACAGAATTACCGTTTTACCCTCAATTTATA-AATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCAATTTATAGAATT
35013837 TACTAAAATA
Statistics
Matches: 187, Mismatches: 19, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
80 6 0.03
81 179 0.96
82 2 0.01
ACGTcount: A:0.31, C:0.20, G:0.07, T:0.42
Consensus pattern (80 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCTCAATTTATAGAATTATCATTTTACTCTCGATT
TAAAAATTACCATTT
Found at i:35013839 original size:27 final size:27
Alignment explanation
Indices: 35013548--35013836 Score: 355
Period size: 27 Copynumber: 10.7 Consensus size: 27
35013538 ATTTCCAAAG
* ** *
35013548 TACCATCGATTTATAGAATTACTGTTA
1 TACCCTCGATTTATAGAATTACCATTT
* ***
35013575 TACCCTTGATTTATAGAATTATTGTTT
1 TACCCTCGATTTATAGAATTACCATTT
** *
35013602 TACTATCGATTTATAAAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
35013629 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
35013656 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
35013683 TACCCTCGATTTAAAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
35013710 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
35013737 TACCCTCAATTTATAGAATTATCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * * *
35013764 TACTCTCGATTTACAAAATTATCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
35013791 TACCCTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
*
35013818 TACCCTCAATTTATA-AATT
1 TACCCTCGATTTATAGAATT
35013837 TACTAAAATA
Statistics
Matches: 230, Mismatches: 32, Indels: 1
0.87 0.12 0.00
Matches are distributed among these distances:
26 4 0.02
27 226 0.98
ACGTcount: A:0.31, C:0.20, G:0.07, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTT
Found at i:35013848 original size:27 final size:27
Alignment explanation
Indices: 35013818--35014052 Score: 167
Period size: 27 Copynumber: 8.7 Consensus size: 27
35013808 ATTACCGTTT
** * *
35013818 TACCCTCAATTTATAAATTTACTAAAA
1 TACCCTCGGTTTATAAAATTACCAAAA
* *
35013845 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGGTTTATAAAATTACCAAAA
* * *
35013872 TACCCTC-GATCAGTAAAATTACTAAAA
1 TACCCTCGGTTTA-TAAAATTACCAAAA
*
35013899 TATCCCT-GGTTTGTAAAATTACCAAAA
1 TA-CCCTCGGTTTATAAAATTACCAAAA
* *
35013926 TACCC-CTGGTTTGTAAAATTACTAAAA
1 TACCCTC-GGTTTATAAAATTACCAAAA
* *
35013953 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTC-GGTTTATAAAATTACCAAAA
* *
35013980 TACCC-CTGGCTTGTAAAATTACCAAAA
1 TACCCTC-GGTTTATAAAATTACCAAAA
* * * * * *
35014007 TACCC-CTGATTTGTGAAATGATCGAAA
1 TACCCTC-GGTTTATAAAATTACCAAAA
*
35014034 TACTCTCGGTTTATAAAAT
1 TACCCTCGGTTTATAAAAT
35014053 ATCGAAATAA
Statistics
Matches: 172, Mismatches: 30, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
26 6 0.03
27 159 0.92
28 7 0.04
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
TACCCTCGGTTTATAAAATTACCAAAA
Found at i:35013876 original size:54 final size:53
Alignment explanation
Indices: 35013818--35014052 Score: 215
Period size: 54 Copynumber: 4.4 Consensus size: 53
35013808 ATTACCGTTT
* * **
35013818 TACCCTCAATTTATAAATTTACTAAAATACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACTAAAATACCC-TGGTTTGTAAAATTACCAAAA
*
35013872 TACCCTCGA-TCAGTAAAATTACTAAAATATCCCTGGTTTGTAAAATTACCAAAA
1 TACCCTCGATTTA-TAAAATTACTAAAATA-CCCTGGTTTGTAAAATTACCAAAA
* * *
35013926 TACCC-CTGGTTTGTAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTC-GATTTATAAAATTACTAAAATA-CCCTGGTTTGTAAAATTACCAAAA
** * * * * * * *
35013980 TACCC-CTGGCTTGTAAAATTACCAAAATACCCCTGATTTGTGAAATGATCGAAA
1 TACCCTC-GATTTATAAAATTACTAAAATA-CCCTGGTTTGTAAAATTACCAAAA
* *
35014034 TACTCTCGGTTTATAAAAT
1 TACCCTCGATTTATAAAAT
35014053 ATCGAAATAA
Statistics
Matches: 155, Mismatches: 21, Indels: 10
0.83 0.11 0.05
Matches are distributed among these distances:
53 3 0.02
54 147 0.95
55 5 0.03
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.31
Consensus pattern (53 bp):
TACCCTCGATTTATAAAATTACTAAAATACCCTGGTTTGTAAAATTACCAAAA
Found at i:35013878 original size:81 final size:81
Alignment explanation
Indices: 35013521--35013868 Score: 387
Period size: 81 Copynumber: 4.3 Consensus size: 81
35013511 ATTGCAGAAA
* * * *** * * * * **
35013521 TACCCTCGACTTGCAAAATTTCCAAAGTACCATCGATTTATAGAATTACTGTTATACCCTTGATT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAATT
* *
35013586 TATAGAATTATTGTTT
66 TATAGAATTACTATTT
** * *
35013602 TACTATCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAATT
*
35013667 TATAGAATTACCATTT
66 TATAGAATTACTATTT
* *
35013683 TACCCTCGATTTA-AAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCAAT
1 TACCCTCGATTTACAA-AATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAAT
35013747 TTATAGAATTA-TCATTT
65 TTATAGAATTACT-ATTT
* * *
35013764 TACTCTCGATTTACAAAATTATCATTTTACCCTCAATTTACAGAATTACCGTTTTACCCTCAATT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAATT
***
35013829 TATA-AATTTACTAAAA
66 TATAGAA-TTACTATTT
* *
35013845 TACCCTTGGTTTACAAAATTACCA
1 TACCCTCGATTTACAAAATTACCA
35013869 AAATACCCTC
Statistics
Matches: 227, Mismatches: 35, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
80 4 0.02
81 220 0.97
82 3 0.01
ACGTcount: A:0.32, C:0.21, G:0.07, T:0.40
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAATT
TATAGAATTACTATTT
Found at i:35014020 original size:81 final size:81
Alignment explanation
Indices: 35013831--35014025 Score: 248
Period size: 81 Copynumber: 2.4 Consensus size: 81
35013821 CCTCAATTTA
* * * ** * *
35013831 TAAATTTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACTA
1 TAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTAGATCAGTAAAATTACCA
* *
35013896 AAATATCCCTGGTTTG
66 AAATACCCCTGGCTTG
* **
35013912 TAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCCTAG-TTTGTAAAATTACC
1 TAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATA-CCCTAGATCAGTAAAATTACC
35013976 AAAATACCCCTGGCTTG
65 AAAATACCCCTGGCTTG
* *
35013993 TAAAATTACCAAAATACCCCTGATTTGTGAAAT
1 TAAAATTACCAAAATACCCCTGGTTTGTAAAAT
35014026 GATCGAAATA
Statistics
Matches: 99, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
81 94 0.95
82 5 0.05
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (81 bp):
TAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTAGATCAGTAAAATTACCA
AAATACCCCTGGCTTG
Found at i:35014270 original size:27 final size:27
Alignment explanation
Indices: 35014055--35014271 Score: 245
Period size: 27 Copynumber: 8.0 Consensus size: 27
35014045 TATAAAATAT
* * *
35014055 CGAAATAACCCTGTAGGGTAGAATAAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
35014082 CGAAACACCCCTGCAGAGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
**
35014109 TAAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
35014136 CGAAATACCCCTGTAAGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
35014163 TGAAATACCCCTGTAAGGTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
35014190 TGAAATACCCTTGTAGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
35014217 TGGAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * * *
35014244 CGAGATACCCTTGTGGGGTAAAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
35014271 C
1 C
35014272 ATTTTGCCCC
Statistics
Matches: 161, Mismatches: 29, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 161 1.00
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.24
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:35014941 original size:26 final size:27
Alignment explanation
Indices: 35014905--35014978 Score: 105
Period size: 27 Copynumber: 2.8 Consensus size: 27
35014895 ATTCTGTTAA
* *
35014905 GTGGCTTTGCCACATTATCTGT-TCTG
1 GTGGCTCTGCCACAATATCTGTATCTG
35014931 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTATCTG
* *
35014958 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
35014979 ATAACTGAGC
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
26 20 0.47
27 23 0.53
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTATCTG
Found at i:35015148 original size:19 final size:19
Alignment explanation
Indices: 35015126--35015182 Score: 56
Period size: 19 Copynumber: 3.4 Consensus size: 19
35015116 TTCTGATTTT
35015126 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
*
35015145 TGATTCTG--A--T--T-T
1 TGATTCTGTTACCTGATAC
35015157 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
35015176 TGATTCT
1 TGATTCT
35015183 TATTCTAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 14
0.64 0.04 0.31
Matches are distributed among these distances:
12 8 0.28
13 1 0.03
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 15 0.52
ACGTcount: A:0.19, C:0.18, G:0.16, T:0.47
Consensus pattern (19 bp):
TGATTCTGTTACCTGATAC
Found at i:35015161 original size:31 final size:32
Alignment explanation
Indices: 35015116--35015182 Score: 127
Period size: 31 Copynumber: 2.1 Consensus size: 32
35015106 TGCATTCACT
35015116 TTCTGATTTTTGATTCTGTTACCTGATACTGA
1 TTCTGATTTTTGATTCTGTTACCTGATACTGA
35015148 TTCTGA-TTTTGATTCTGTTACCTGATACTGA
1 TTCTGATTTTTGATTCTGTTACCTGATACTGA
35015179 TTCT
1 TTCT
35015183 TATTCTAATT
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 29 0.83
32 6 0.17
ACGTcount: A:0.18, C:0.16, G:0.15, T:0.51
Consensus pattern (32 bp):
TTCTGATTTTTGATTCTGTTACCTGATACTGA
Found at i:35015194 original size:31 final size:31
Alignment explanation
Indices: 35015128--35015218 Score: 114
Period size: 31 Copynumber: 3.0 Consensus size: 31
35015118 CTGATTTTTG
* * *
35015128 ATTCTGTTACCTGATACTGATTCTGATTTTG
1 ATTCTGTTACCTGATACTGATTCTTATTCTA
35015159 ATTCTGTTACCTGATACTGATTCTTATTCTA
1 ATTCTGTTACCTGATACTGATTCTTATTCTA
* *
35015190 ATTCTAGTT--CTGATAATGTTTCTTATTCT
1 ATTCT-GTTACCTGATACTGATTCTTATTCT
35015219 GTAATGGGTT
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
30 18 0.33
31 33 0.61
32 3 0.06
ACGTcount: A:0.21, C:0.16, G:0.12, T:0.51
Consensus pattern (31 bp):
ATTCTGTTACCTGATACTGATTCTTATTCTA
Found at i:35019811 original size:44 final size:44
Alignment explanation
Indices: 35019748--35019835 Score: 158
Period size: 44 Copynumber: 2.0 Consensus size: 44
35019738 GGAGACTAGA
* *
35019748 AATGCATGGCCATGCTTGAATAAGGTGATATGAGATATCACACT
1 AATGCATGGCCATGCTTGAATAAGGTGATATGAGACACCACACT
35019792 AATGCATGGCCATGCTTGAATAAGGTGATATGAGACACCACACT
1 AATGCATGGCCATGCTTGAATAAGGTGATATGAGACACCACACT
35019836 TACTTGTTTA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (44 bp):
AATGCATGGCCATGCTTGAATAAGGTGATATGAGACACCACACT
Found at i:35021412 original size:144 final size:143
Alignment explanation
Indices: 35021150--35021513 Score: 421
Period size: 144 Copynumber: 2.5 Consensus size: 143
35021140 TGTGCGCTAG
* * *
35021150 TGTAAGACCATGTCTGGAACATGGCGTCGGCCACTT--TATGTGTGCCAGTGTAAGACCATGTTT
1 TGTAAGACCATGTCTGG-ACATGGCATCGG-CA-TTGATATGTGAGCTAGTGTAAGACCATGTTT
* *
35021213 GGGACATGGCATCGGCCACGATATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCA
63 GGGACATGGCATCGGCCACGATATGAAAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCA
* *
35021278 ATGTTG-CGAGCGCCAA
128 ATG-AGACGAGAGCCAA
* * *
35021294 TGTAAGACCATGTCTAGGACATGGCATCGGTATTGATATGTGCGCTAGTGTAAGACCATGTATGG
1 TGTAAGACCATGTCT-GGACATGGCATCGGCATTGATATGTGAGCTAGTGTAAGACCATGTTTGG
* * * * *
35021359 GACATGGCATCGGCCA-TATTATGAAAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTAT
65 GACATGGCATCGGCCACGA-TATGAAAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCAA
* *
35021423 TGAGACGAGAGCTAG
129 TGAGACGAGAGCCAA
* * * * * *
35021438 TGTAAGACCATGTCTGGGATATGGCATCGGCCTCGACATGTGAGATAGTGCAAGACCATGTTTGG
1 TGTAAGACCATGTCT-GGACATGGCATCGGCATTGATATGTGAGCTAGTGTAAGACCATGTTTGG
*
35021503 AACATGGCATC
65 GACATGGCATC
35021514 AGCAATTCAC
Statistics
Matches: 188, Mismatches: 27, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
142 2 0.01
143 3 0.02
144 181 0.96
145 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (143 bp):
TGTAAGACCATGTCTGGACATGGCATCGGCATTGATATGTGAGCTAGTGTAAGACCATGTTTGGG
ACATGGCATCGGCCACGATATGAAAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCAATG
AGACGAGAGCCAA
Found at i:35021469 original size:96 final size:95
Alignment explanation
Indices: 35021135--35021469 Score: 393
Period size: 96 Copynumber: 3.5 Consensus size: 95
35021125 GACATTTGGG
* * * * *
35021135 TGATATGTGCGCTAGTGTAAGACCATGTCTGGAACATGGCGTCGGCCACTTTATGTGTGCCAGTG
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCCA-TTTATGAGAGCCAGTG
* *
35021200 TAAGACCATGTTTGGGACATGGCATCGGCCA-
65 TAAGACCATGTCTGGGACATGGCATCGG-TAT
* * * * ** * *
35021231 CGATATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTGCGAGCGCCAATG
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCCAT-TTATGAGAGCCAGTG
*
35021296 TAAGACCATGTCTAGGACATGGCATCGGTAT
65 TAAGACCATGTCTGGGACATGGCATCGGTAT
* * * * * *
35021327 TGATATGTGCGCTAGTGTAAGACCATGTATGGGACATGGCATCGGCCATATTATGAAAGCTAGTG
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCCAT-TTATGAGAGCCAGTG
35021392 TAAGACCATGTCTGGGACATGGCATCGGTAT
65 TAAGACCATGTCTGGGACATGGCATCGGTAT
* * * *
35021423 TGAGACGAGAGCTAGTGTAAGACCATGTCTGGGATATGGCATCGGCC
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCC
35021470 TCGACATGTG
Statistics
Matches: 201, Mismatches: 36, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
95 2 0.01
96 199 0.99
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (95 bp):
TGATATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCCATTTATGAGAGCCAGTGT
AAGACCATGTCTGGGACATGGCATCGGTAT
Found at i:35021487 original size:48 final size:48
Alignment explanation
Indices: 35021136--35021513 Score: 330
Period size: 48 Copynumber: 7.9 Consensus size: 48
35021126 ACATTTGGGT
* * * * *
35021136 GATATGTGCGCTAGTGTAAGACCATGTCTGGAACATGGCGTCGGCCAC
1 GATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
** * * * * *
35021184 TTTATGTGTGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCAC
1 GATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* * * *
35021232 GATATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCAAT-
1 GATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTC
* ** * * * * ** *
35021280 GTTGCGAGCGCCAATGTAAGACCATGTCTAGGACATGGCATCGGTATT
1 GATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* * *
35021328 GATATGTGCGCTAGTGTAAGACCATGTATGGGACATGGCATCGGCCAT-
1 GATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCC-TC
* ** *
35021376 -ATTATGAAAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTATT
1 GA-TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* * *
35021424 GAGACGAGAGCTAGTGTAAGACCATGTCTGGGATATGGCATCGGCCTC
1 GATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* * * * * *
35021472 GACATGTGAGATAGTGCAAGACCATGTTTGGAACATGGCATC
1 GATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
35021514 AGCAATTCAC
Statistics
Matches: 270, Mismatches: 54, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
47 4 0.01
48 264 0.98
49 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (48 bp):
GATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
Found at i:35025542 original size:42 final size:42
Alignment explanation
Indices: 35025495--35025586 Score: 175
Period size: 42 Copynumber: 2.2 Consensus size: 42
35025485 ATGCCCTTAG
35025495 GCCCATTTCAATATCACATGTAATGCCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGCCAATGAATGTATGCAA
*
35025537 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGCCAATGAATGTATGCAA
35025579 GCCCATTT
1 GCCCATTT
35025587 GGGGAGACTA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGCCAATGAATGTATGCAA
Found at i:35025698 original size:14 final size:14
Alignment explanation
Indices: 35025679--35025705 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
35025669 ACCAACACAC
35025679 CACTGGCAGCATAT
1 CACTGGCAGCATAT
35025693 CACTGGCAGCATA
1 CACTGGCAGCATA
35025706 GCTGCTTTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.30, G:0.22, T:0.19
Consensus pattern (14 bp):
CACTGGCAGCATAT
Found at i:35025780 original size:25 final size:25
Alignment explanation
Indices: 35025746--35025814 Score: 102
Period size: 25 Copynumber: 2.8 Consensus size: 25
35025736 CTCTTTTAAT
*
35025746 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
35025771 AACTAGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
35025796 AACTGGGGCAGAGCCCTTT
1 AACTGGGGCAAAGCCCTTT
35025815 AGCACTTCCT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:35029612 original size:47 final size:47
Alignment explanation
Indices: 35029204--35029604 Score: 569
Period size: 47 Copynumber: 8.5 Consensus size: 47
35029194 CAGCCAAGAG
*
35029204 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
35029251 AGTGTATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 A--G--TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
35029302 AGTGTATGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 A--G--TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
35029353 AGTGTATATGTGTGATAAGG-CTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
35029399 AGTGTATATGT-TGATAAGG---AATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
35029442 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* * * *
35029489 AGTGTATATGTGTTATAAGGCCTAATAGCCGACGTGATGAACGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
35029536 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
35029583 AGTGTATATATGTGACAAGGCC
1 AGTGTATATATGTGATAAGGCC
35029605 GAGTGGCCAA
Statistics
Matches: 331, Mismatches: 15, Indels: 16
0.91 0.04 0.04
Matches are distributed among these distances:
43 35 0.11
44 8 0.02
45 8 0.02
46 36 0.11
47 147 0.44
49 2 0.01
51 95 0.29
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
Found at i:35029823 original size:37 final size:37
Alignment explanation
Indices: 35029767--35029845 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
35029757 CCGAGCTCTA
* * *
35029767 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
35029804 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
35029841 AAGAC
1 AAGAC
35029846 TTGGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:35031742 original size:43 final size:43
Alignment explanation
Indices: 35031693--35031839 Score: 285
Period size: 43 Copynumber: 3.4 Consensus size: 43
35031683 GTTGGTTTTC
35031693 GGCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATT
1 GGCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATT
35031736 GGCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATT
1 GGCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATT
*
35031779 GGCACTAAGTGTGTGGGCAATAAGTGTTCACGGTTGTGAGATT
1 GGCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATT
35031822 GGCACTAAGTGTGCGGGC
1 GGCACTAAGTGTGCGGGC
35031840 TTGAAATGCA
Statistics
Matches: 102, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 102 1.00
ACGTcount: A:0.22, C:0.14, G:0.36, T:0.27
Consensus pattern (43 bp):
GGCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATT
Found at i:35031856 original size:29 final size:29
Alignment explanation
Indices: 35031821--35031894 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
35031811 GTTGTGAGAT
* *
35031821 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
35031850 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
35031879 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
35031895 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:35032330 original size:40 final size:40
Alignment explanation
Indices: 35032286--35032362 Score: 127
Period size: 40 Copynumber: 1.9 Consensus size: 40
35032276 GAGTTACTAA
*
35032286 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCAATCATGCTAGTGATGT
* *
35032326 ATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCAATCATGCTAGTGA
35032363 CGTGTATTCG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.22
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCAATCATGCTAGTGATGT
Found at i:35036426 original size:47 final size:47
Alignment explanation
Indices: 35035872--35036418 Score: 860
Period size: 47 Copynumber: 11.5 Consensus size: 47
35035862 CAGCCAAGAG
*
35035872 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
35035919 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGACGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
35035966 AGTGTATGTATATATGTGATATGGCCTAATGGCCGATGTGATGAATGTGAA
1 A--G--TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
35036017 AGTGTATGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 A--G--TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
35036068 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
35036115 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
35036162 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
35036209 AGTGTATTTGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
35036256 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
35036303 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
35036350 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
35036397 AGTGTATATATGTGACAAGGCC
1 AGTGTATATATGTGATAAGGCC
35036419 GAGTGGCCAA
Statistics
Matches: 477, Mismatches: 19, Indels: 8
0.95 0.04 0.02
Matches are distributed among these distances:
47 383 0.80
49 2 0.00
51 92 0.19
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
Found at i:35036603 original size:37 final size:36
Alignment explanation
Indices: 35036546--35036623 Score: 111
Period size: 37 Copynumber: 2.1 Consensus size: 36
35036536 CCGAGCTCTA
* * *
35036546 AAGACCCATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCATAACTACGTGTGGAGATTATGTCCGGGT
*
35036582 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCC-ATAACTACGTGTGGAGATTATGTCCGGGT
35036619 AAGAC
1 AAGAC
35036624 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 7 0.19
37 30 0.81
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (36 bp):
AAGACCCATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:35038078 original size:27 final size:27
Alignment explanation
Indices: 35038052--35038237 Score: 142
Period size: 27 Copynumber: 6.7 Consensus size: 27
35038042 ATCTACAAAC
* *
35038052 CAAGGGTATTTCAGCAATTTTGTAAAC
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* * *
35038079 CAATGGTATTTTTA-TAATTTTTTAAAAGT
1 CAAGGGTA-TTTCAGTAATTTTGT-AAA-T
*
35038108 CAAGGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* *
35038135 CAATGGTATTTCTA-TAATTTTTTAAAAGT
1 CAAGGGTATTTC-AGTAATTTTGT-AAA-T
*
35038164 CAAGGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* * ** **
35038191 TAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
** *
35038218 TGAGGGTATTTCGGTAATTT
1 CAAGGGTATTTCAGTAATTT
35038238 CACAAACCAG
Statistics
Matches: 127, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
27 73 0.57
28 19 0.15
29 35 0.28
ACGTcount: A:0.31, C:0.07, G:0.18, T:0.45
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTTTGTAAAT
Found at i:35038116 original size:29 final size:29
Alignment explanation
Indices: 35038052--35038189 Score: 151
Period size: 29 Copynumber: 4.9 Consensus size: 29
35038042 ATCTACAAAC
* *
35038052 CAAGGGTATTTC-AGCAATTTTGT-AAA-C
1 CAAGGGTATTTCTA-TAATTTTGTAAAAGT
* * *
35038079 CAATGGTATTTTTATAATTTTTTAAAAGT
1 CAAGGGTATTTCTATAATTTTGTAAAAGT
*
35038108 CAAGGGTATTTCTGTAATTTTGT-AAA-T
1 CAAGGGTATTTCTATAATTTTGTAAAAGT
* *
35038135 CAATGGTATTTCTATAATTTTTTAAAAGT
1 CAAGGGTATTTCTATAATTTTGTAAAAGT
*
35038164 CAAGGGTATTTCTGTAATTTTGTAAA
1 CAAGGGTATTTCTATAATTTTGTAAA
35038190 TTAGGGGTAT
Statistics
Matches: 91, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
27 38 0.42
28 10 0.11
29 43 0.47
ACGTcount: A:0.33, C:0.08, G:0.15, T:0.44
Consensus pattern (29 bp):
CAAGGGTATTTCTATAATTTTGTAAAAGT
Found at i:35038201 original size:56 final size:56
Alignment explanation
Indices: 35038052--35038190 Score: 242
Period size: 56 Copynumber: 2.5 Consensus size: 56
35038042 ATCTACAAAC
* * * *
35038052 CAAGGGTATTTCAGCAATTTTGTAAACCAATGGTATTTTTATAATTTTTTAAAAGT
1 CAAGGGTATTTCTGTAATTTTGTAAATCAATGGTATTTCTATAATTTTTTAAAAGT
35038108 CAAGGGTATTTCTGTAATTTTGTAAATCAATGGTATTTCTATAATTTTTTAAAAGT
1 CAAGGGTATTTCTGTAATTTTGTAAATCAATGGTATTTCTATAATTTTTTAAAAGT
35038164 CAAGGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTTCTGTAATTTTGTAAAT
35038191 TAGGGGTATT
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 79 1.00
ACGTcount: A:0.32, C:0.08, G:0.15, T:0.45
Consensus pattern (56 bp):
CAAGGGTATTTCTGTAATTTTGTAAATCAATGGTATTTCTATAATTTTTTAAAAGT
Found at i:35038242 original size:27 final size:27
Alignment explanation
Indices: 35038167--35038317 Score: 178
Period size: 27 Copynumber: 5.6 Consensus size: 27
35038157 TAAAAGTCAA
* ** *
35038167 GGGTATTTCTGTAATTTTGTAAATTAG
1 GGGTATTTCGGTAATTTTACAAACTAG
* *
35038194 GGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTCGGTAATTTTACAAACTAG
* *
35038220 AGGGTATTTCGGTAATTTCACAAACCAG
1 -GGGTATTTCGGTAATTTTACAAACTAG
* *
35038248 TGGTATTTCGATAATTTTACAAACTAG
1 GGGTATTTCGGTAATTTTACAAACTAG
*
35038275 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTCGGTAATTTTACAAACTAG
*
35038302 GGGTATTTTGGTAATT
1 GGGTATTTCGGTAATT
35038318 CTATCCTACA
Statistics
Matches: 106, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
26 2 0.02
27 103 0.97
28 1 0.01
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.42
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAACTAG
Found at i:35038284 original size:81 final size:81
Alignment explanation
Indices: 35038168--35038317 Score: 223
Period size: 81 Copynumber: 1.9 Consensus size: 81
35038158 AAAAGTCAAG
** * *
35038168 GGTATTTCTGTAATTTTGTAAATTAGGGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGG
1 GGTATTTCTGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTCGG
35038232 TAATTTCACAAACCAGT
65 TAATTTCACAAACCAGT
*
35038249 GGTATTTC-GATAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
1 GGTATTTCTG-TAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGG
35038313 TAATT
65 TAATT
35038318 CTATCCTACA
Statistics
Matches: 62, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
80 1 0.02
81 59 0.95
82 2 0.03
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (81 bp):
GGTATTTCTGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGT
AATTTCACAAACCAGT
Found at i:35038333 original size:27 final size:27
Alignment explanation
Indices: 35038195--35038344 Score: 126
Period size: 27 Copynumber: 5.6 Consensus size: 27
35038185 GTAAATTAGG
* *
35038195 GGTATTTTGGTAATTTTACAAA-TTGA
1 GGTATTTTGGTAATTCTACAAACTAGA
* * *
35038221 GGGTATTTCGGTAATT-TCACAAACCAGT
1 -GGTATTTTGGTAATTCT-ACAAACTAGA
* * * *
35038249 GGTATTTCGATAATTTTACAAACTAGG
1 GGTATTTTGGTAATTCTACAAACTAGA
* *
35038276 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTCTACAAACTAGA
**
35038303 GGTATTTTGGTAATTCTATCCTAC-AGA
1 GGTATTTTGGTAATTCTA-CAAACTAGA
*
35038330 GGTATTTTAGTAATT
1 GGTATTTTGGTAATT
35038345 TGACAATCGA
Statistics
Matches: 105, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.01
27 99 0.94
28 5 0.05
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (27 bp):
GGTATTTTGGTAATTCTACAAACTAGA
Found at i:35038334 original size:54 final size:53
Alignment explanation
Indices: 35038168--35038350 Score: 170
Period size: 54 Copynumber: 3.4 Consensus size: 53
35038158 AAAAGTCAAG
** * **
35038168 GGTATTTCT-GTAATTTTGTAAATTAGGGGTATTTTGGTAATTTTACAAATTGA
1 GGTATTT-TGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACAGA
* * * * * * *
35038221 GGGTATTTCGGTAATTTCACAAACCAGTGGTATTTCGATAATTTTACAAACTAGG
1 -GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAAC-AGA
* **
35038276 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTATCCTACAGA
1 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTA-CAAACAGA
* *
35038330 GGTATTTTAGTAATTTGACAA
1 GGTATTTTGGTAATTTTACAA
35038351 TCGAGGGTAA
Statistics
Matches: 102, Mismatches: 24, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
54 98 0.96
55 4 0.04
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (53 bp):
GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACAGA
Found at i:35038540 original size:27 final size:27
Alignment explanation
Indices: 35038349--35038532 Score: 278
Period size: 27 Copynumber: 6.8 Consensus size: 27
35038339 GTAATTTGAC
35038349 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * * *
35038376 AATCAAAGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
35038403 AATCGAGCGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
35038430 AATCGAGGGTAAAACGGTAATTCCATA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
35038457 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
35038484 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
35038511 AATCGAAGGTAAAACGGTAATT
1 AATCGAGGGTAAAACGGTAATT
35038533 TTACAAATTG
Statistics
Matches: 142, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 142 1.00
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTATA
Found at i:35046376 original size:55 final size:55
Alignment explanation
Indices: 35046264--35046382 Score: 141
Period size: 55 Copynumber: 2.2 Consensus size: 55
35046254 GTAGGCCCAT
* *
35046264 GCCTGTGTTAATCTGACAGGTTCACCCACGGTTGCTCGGCATGGGCGTGTCGCAC
1 GCCTGTGTTAATCTGACAGGTTCACCCACGGTTGCTAGGCATGGGCGTCTCGCAC
* ** * * *
35046319 GCCTGTGTTAATTTGACAGGTTCGGCCACGGTTTCTAGGCACT-GGCGTCTTGGAC
1 GCCTGTGTTAATCTGACAGGTTCACCCACGGTTGCTAGGCA-TGGGCGTCTCGCAC
*
35046374 GCCCGTGTT
1 GCCTGTGTT
35046383 GTTTTGGCAA
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
55 53 0.98
56 1 0.02
ACGTcount: A:0.13, C:0.27, G:0.31, T:0.29
Consensus pattern (55 bp):
GCCTGTGTTAATCTGACAGGTTCACCCACGGTTGCTAGGCATGGGCGTCTCGCAC
Found at i:35057886 original size:22 final size:21
Alignment explanation
Indices: 35057834--35057912 Score: 67
Period size: 21 Copynumber: 3.9 Consensus size: 21
35057824 ATAAACTTAT
35057834 AAAA-TATAAAAAAAATCATA
1 AAAATTATAAAAAAAATCATA
**
35057854 AAAATTATAAAAGGAATCATA
1 AAAATTATAAAAAAAATCATA
* * *
35057875 CAAACTTAT--AAATATTC-TA
1 -AAAATTATAAAAAAAATCATA
35057894 AAAATTTATAAAAAAAATC
1 AAAA-TTATAAAAAAAATC
35057913 TAATAAAATT
Statistics
Matches: 45, Mismatches: 9, Indels: 9
0.71 0.14 0.14
Matches are distributed among these distances:
18 3 0.07
19 6 0.13
20 9 0.20
21 20 0.44
22 7 0.16
ACGTcount: A:0.63, C:0.08, G:0.03, T:0.27
Consensus pattern (21 bp):
AAAATTATAAAAAAAATCATA
Found at i:35057906 original size:41 final size:38
Alignment explanation
Indices: 35057851--35057985 Score: 116
Period size: 41 Copynumber: 3.4 Consensus size: 38
35057841 AAAAAAAATC
35057851 ATAAAAA-TTATAAAAGGAATCATACAAACTTATAAATATT
1 ATAAAAATTTATAAAA--AATCATA-AAACTTATAAATATT
* *
35057891 CTAAAAATTTATAAAAAAAATCTAATAAAATTTA-ATAAT-TT
1 ATAAAAATTTAT--AAAAAATC--ATAAAACTTATA-AATATT
* *
35057932 ATAAAAAATTAT-AAAAAGCATAAAAACTTATAAATATT
1 ATAAAAATTTATAAAAAATCAT-AAAACTTATAAATATT
35057970 ATACAAAATTTATAAA
1 ATA-AAAATTTATAAA
35057986 CTATCTAACA
Statistics
Matches: 77, Mismatches: 7, Indels: 22
0.73 0.07 0.21
Matches are distributed among these distances:
36 2 0.03
37 10 0.13
38 12 0.16
39 8 0.10
40 8 0.10
41 21 0.27
42 9 0.12
43 7 0.09
ACGTcount: A:0.60, C:0.06, G:0.02, T:0.32
Consensus pattern (38 bp):
ATAAAAATTTATAAAAAATCATAAAACTTATAAATATT
Found at i:35057943 original size:10 final size:10
Alignment explanation
Indices: 35057830--35057985 Score: 63
Period size: 9 Copynumber: 15.7 Consensus size: 10
35057820 TAATATAAAC
*
35057830 TTATAAAATA
1 TTATAAAAAA
*
35057840 -TAAAAAAAA
1 TTATAAAAAA
*
35057849 TCAT-AAAAA
1 TTATAAAAAA
35057858 TTATAAAAGGAA
1 TTATAAAA--AA
* * *
35057870 TCATACAAAC
1 TTATAAAAAA
*
35057880 TTAT-AAATA
1 TTATAAAAAA
* *
35057889 TTCTAAAAAT
1 TTATAAAAAA
35057899 TTATAAAAAAA
1 TTAT-AAAAAA
* *
35057910 ATCTAATAAAA
1 TTATAA-AAAA
* *
35057921 TT-TAATAAT
1 TTATAAAAAA
35057930 TTATAAAAAA
1 TTATAAAAAA
35057940 TTAT-AAAAA
1 TTATAAAAAA
** *
35057949 GCATAAAAAC
1 TTATAAAAAA
*
35057959 TTAT-AAATA
1 TTATAAAAAA
*
35057968 TTATACAAAAT
1 TTATA-AAAAA
35057979 TTATAAA
1 TTATAAA
35057986 CTATCTAACA
Statistics
Matches: 102, Mismatches: 33, Indels: 22
0.65 0.21 0.14
Matches are distributed among these distances:
9 38 0.37
10 36 0.35
11 20 0.20
12 8 0.08
ACGTcount: A:0.61, C:0.06, G:0.02, T:0.31
Consensus pattern (10 bp):
TTATAAAAAA
Found at i:35058671 original size:9 final size:9
Alignment explanation
Indices: 35058659--35058714 Score: 62
Period size: 9 Copynumber: 6.0 Consensus size: 9
35058649 AAATGATTTT
35058659 TTTTTATAA
1 TTTTTATAA
35058668 TTTTTAT-A
1 TTTTTATAA
35058676 TTATTTATAA
1 TT-TTTATAA
35058686 GTTTTTATGAA
1 -TTTTTAT-AA
35058697 -TTTTATAAA
1 TTTTTAT-AA
35058706 TTTTTATAA
1 TTTTTATAA
35058715 AATTTTAAAA
Statistics
Matches: 41, Mismatches: 1, Indels: 10
0.79 0.02 0.19
Matches are distributed among these distances:
8 3 0.07
9 22 0.54
10 12 0.29
11 4 0.10
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (9 bp):
TTTTTATAA
Found at i:35058692 original size:19 final size:17
Alignment explanation
Indices: 35058660--35058714 Score: 65
Period size: 19 Copynumber: 3.0 Consensus size: 17
35058650 AATGATTTTT
*
35058660 TTTTATAATTTTTATAT
1 TTTTATAATTTTTATAA
35058677 TATTTATAAGTTTTTATGAA
1 T-TTTATAA-TTTTTAT-AA
35058697 TTTTATAAATTTTTATAA
1 TTTTAT-AATTTTTATAA
35058715 AATTTTAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
17 1 0.03
18 9 0.27
19 19 0.58
20 4 0.12
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.62
Consensus pattern (17 bp):
TTTTATAATTTTTATAA
Found at i:35058713 original size:10 final size:10
Alignment explanation
Indices: 35058659--35058743 Score: 70
Period size: 10 Copynumber: 8.7 Consensus size: 10
35058649 AAATGATTTT
35058659 TTTTTAT-AA
1 TTTTTATAAA
35058668 TTTTTAT--A
1 TTTTTATAAA
*
35058676 TTATTTATAAG
1 TT-TTTATAAA
*
35058687 TTTTTATGAA
1 TTTTTATAAA
35058697 -TTTTATAAA
1 TTTTTATAAA
35058706 TTTTTATAAA
1 TTTTTATAAA
* *
35058716 ATTTTAAAAA
1 TTTTTATAAA
* *
35058726 TTTTAAAAAA
1 TTTTTATAAA
35058736 TGTTTTAT
1 T-TTTTAT
35058744 TCATTTTATA
Statistics
Matches: 61, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
8 3 0.05
9 20 0.33
10 32 0.52
11 6 0.10
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.58
Consensus pattern (10 bp):
TTTTTATAAA
Found at i:35058720 original size:29 final size:29
Alignment explanation
Indices: 35058660--35058730 Score: 74
Period size: 29 Copynumber: 2.4 Consensus size: 29
35058650 AATGATTTTT
* **
35058660 TTTTATAATTTT-TATATTATTTATAAGT
1 TTTTATAATTTTATAAATTATTTATAAAA
35058688 TTTTATGAATTTTATAAATT-TTTATAAAA
1 TTTTAT-AATTTTATAAATTATTTATAAAA
*
35058717 TTTTAAAAATTTTA
1 TTTT-ATAATTTTA
35058731 AAAAATGTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
28 6 0.17
29 24 0.67
30 6 0.17
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (29 bp):
TTTTATAATTTTATAAATTATTTATAAAA
Found at i:35059432 original size:31 final size:30
Alignment explanation
Indices: 35059380--35059437 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 30
35059370 TGAATTTGAT
35059380 CAAATTTAGTCCCTACTCTTTTTGAAATGGG
1 CAAATTTAGTCCCTACTCTTTTT-AAATGGG
* *
35059411 CAAATTTAGTTCCT-GTACTTTTTAAAT
1 CAAATTTAGTCCCTACT-CTTTTTAAAT
35059438 TTTGAAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 5 0.21
31 19 0.79
ACGTcount: A:0.28, C:0.17, G:0.12, T:0.43
Consensus pattern (30 bp):
CAAATTTAGTCCCTACTCTTTTTAAATGGG
Found at i:35061835 original size:12 final size:11
Alignment explanation
Indices: 35061813--35061853 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
35061803 AAAATTACAA
35061813 AAAATAATTTC
1 AAAATAATTTC
35061824 AAAATAATTTTC
1 AAAATAA-TTTC
35061836 -AAA-AA-TTC
1 AAAATAATTTC
35061844 AAAATAATTT
1 AAAATAATTT
35061854 TTAAAATTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
8 3 0.12
9 3 0.12
10 4 0.15
11 12 0.46
12 4 0.15
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (11 bp):
AAAATAATTTC
Found at i:35061861 original size:19 final size:20
Alignment explanation
Indices: 35061821--35061868 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
35061811 AAAAAATAAT
35061821 TTCAAAATAATTTTCAAAAA
1 TTCAAAATAATTTTCAAAAA
*
35061841 TTCAAAATAATTTT-TAAAA
1 TTCAAAATAATTTTCAAAAA
35061860 TTCAAAATA
1 TTCAAAATA
35061869 TTTATGAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
19 13 0.48
20 14 0.52
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (20 bp):
TTCAAAATAATTTTCAAAAA
Found at i:35061878 original size:19 final size:19
Alignment explanation
Indices: 35061821--35061880 Score: 77
Period size: 19 Copynumber: 3.1 Consensus size: 19
35061811 AAAAAATAAT
*
35061821 TTCAAAATAATTTTCAAAAA
1 TTCAAAATAATTTT-GAAAA
*
35061841 TTCAAAATAATTTTTAAAA
1 TTCAAAATAATTTTGAAAA
35061860 TTCAAAAT-ATTTATGAAAA
1 TTCAAAATAATTT-TGAAAA
35061879 TT
1 TT
35061881 TCGATAAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
18 4 0.11
19 19 0.51
20 14 0.38
ACGTcount: A:0.52, C:0.07, G:0.02, T:0.40
Consensus pattern (19 bp):
TTCAAAATAATTTTGAAAA
Found at i:35062014 original size:15 final size:15
Alignment explanation
Indices: 35061994--35062023 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
35061984 CCTAAATAAG
35061994 TTAATTAATGATTCA
1 TTAATTAATGATTCA
35062009 TTAATTAATGATTCA
1 TTAATTAATGATTCA
35062024 AGTTTATCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.07, G:0.07, T:0.47
Consensus pattern (15 bp):
TTAATTAATGATTCA
Found at i:35063914 original size:27 final size:27
Alignment explanation
Indices: 35063840--35063923 Score: 104
Period size: 24 Copynumber: 3.3 Consensus size: 27
35063830 TTAGCTCTTA
* * *
35063840 TGAGCATCCCGTTATA-TGGCTCTTCG
1 TGAGCTTCCCGTTAAATTGGCTCTTTG
*
35063866 TGAGCTTCCCG---AATTGGCTCTTTT
1 TGAGCTTCCCGTTAAATTGGCTCTTTG
35063890 TGAGCTTCCCGTTAAATTGGCTCTTTG
1 TGAGCTTCCCGTTAAATTGGCTCTTTG
35063917 TGAGCTT
1 TGAGCTT
35063924 TCCAATAGTG
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
23 1 0.02
24 19 0.39
26 10 0.20
27 19 0.39
ACGTcount: A:0.14, C:0.24, G:0.23, T:0.39
Consensus pattern (27 bp):
TGAGCTTCCCGTTAAATTGGCTCTTTG
Found at i:35064010 original size:23 final size:23
Alignment explanation
Indices: 35063983--35064026 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
35063973 CCATTACATT
*
35063983 GCTCTTTATGAGCTCCCCGATAG
1 GCTCTTCATGAGCTCCCCGATAG
* *
35064006 GCTCTTCGTGAGCTTCCCGAT
1 GCTCTTCATGAGCTCCCCGAT
35064027 TAAAAGTTCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.14, C:0.32, G:0.23, T:0.32
Consensus pattern (23 bp):
GCTCTTCATGAGCTCCCCGATAG
Found at i:35064135 original size:24 final size:24
Alignment explanation
Indices: 35064089--35064151 Score: 83
Period size: 24 Copynumber: 2.7 Consensus size: 24
35064079 ATAGCCCGAA
*
35064089 TAAGCTTCCCGATA-GGCTCTTTG
1 TAAGCTTCCTGATATGGCTCTTTG
*
35064112 TGAGCTTCCTGATATGGCTCTTTG
1 TAAGCTTCCTGATATGGCTCTTTG
* *
35064136 TAAGCTACCTGTTATG
1 TAAGCTTCCTGATATG
35064152 TAACACCCCT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
23 12 0.35
24 22 0.65
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.38
Consensus pattern (24 bp):
TAAGCTTCCTGATATGGCTCTTTG
Found at i:35065637 original size:23 final size:23
Alignment explanation
Indices: 35065577--35065711 Score: 96
Period size: 23 Copynumber: 5.7 Consensus size: 23
35065567 GTCATGATCG
*
35065577 GTAAGCTCTTCTTGAGCTGATGAACA
1 GTAAGCTC-TATTGAGCTGA--AACA
* * *
35065603 ATATGCTCTATTGAGCTGAAACG
1 GTAAGCTCTATTGAGCTGAAACA
*
35065626 GTAAGCTCTATTGAGTTG-AACA
1 GTAAGCTCTATTGAGCTGAAACA
* **
35065648 GTAAGCTC-ATACGAGCTGAAATG
1 GTAAGCTCTAT-TGAGCTGAAACA
* * *
35065671 GTAAGCTCCAATGAGCTAAAAACA
1 GTAAGCTCTATTGAGCT-GAAACA
35065695 GTAAGCTCT-TATGAGCT
1 GTAAGCTCTAT-TGAGCT
35065712 AAAATATCAG
Statistics
Matches: 85, Mismatches: 19, Indels: 12
0.73 0.16 0.10
Matches are distributed among these distances:
21 2 0.02
22 16 0.19
23 33 0.39
24 18 0.21
25 10 0.12
26 6 0.07
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (23 bp):
GTAAGCTCTATTGAGCTGAAACA
Found at i:35072169 original size:37 final size:37
Alignment explanation
Indices: 35072128--35072199 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
35072118 CTGCACTGGA
*
35072128 GTAAGGAACCAATGACATATAATTTTCTTTATCTTTG
1 GTAAGGAACCAATGACATATAATTTTCGTTATCTTTG
*
35072165 GTAAGGAACCGATGACATATAATTTTCGTTATCTT
1 GTAAGGAACCAATGACATATAATTTTCGTTATCTT
35072200 CGATTTTTGG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.39
Consensus pattern (37 bp):
GTAAGGAACCAATGACATATAATTTTCGTTATCTTTG
Found at i:35077049 original size:30 final size:30
Alignment explanation
Indices: 35077015--35077075 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
35077005 TCCTTAACTC
35077015 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
35077045 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
35077075 A
1 A
35077076 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:35083018 original size:28 final size:27
Alignment explanation
Indices: 35082961--35083112 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
35082951 TAAATTGTGC
* *
35082961 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
35082988 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
35083016 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
35083043 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
* *
35083071 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
35083098 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
35083113 GACTTAATAA
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:35083026 original size:55 final size:55
Alignment explanation
Indices: 35082961--35083112 Score: 241
Period size: 55 Copynumber: 2.8 Consensus size: 55
35082951 TAAATTGTGC
* *
35082961 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* *
35083016 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* * *
35083071 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCG
35083113 GACTTAATAA
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 90 1.00
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
Found at i:35090996 original size:55 final size:54
Alignment explanation
Indices: 35090935--35091108 Score: 208
Period size: 55 Copynumber: 3.2 Consensus size: 54
35090925 GAGATTGGCG
* *
35090935 CTAAGTGTGCGGGTTTAAATTGTGCAGCACTAAGTGTGCGAATTGA-TATGTAGCA
1 CTAAGTGTGCGAGTTT-AATTGTG-AGCACTAAGTGTGCGAGTTGACTATGTAGCA
*
35090990 CTAAGTGTGCGAGTTTGACTATGT-AGCACTAAGTGTGCGAGTTGACTATGTAGCA
1 CTAAGTGTGCGAGTTT-AAT-TGTGAGCACTAAGTGTGCGAGTTGACTATGTAGCA
* * * * *
35091045 CTAAGTGTGCGAGTATGATTATGTAGCACTAAGTGTGCGAGTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAATTGTG-AGCACTAAGTGTGCGAGTTGACTATGTAGCA
*
35091100 CTGAGTGTG
1 CTAAGTGTG
35091109 GGACTTAATA
Statistics
Matches: 104, Mismatches: 11, Indels: 8
0.85 0.09 0.07
Matches are distributed among these distances:
53 2 0.02
54 21 0.20
55 78 0.75
56 3 0.03
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (54 bp):
CTAAGTGTGCGAGTTTAATTGTGAGCACTAAGTGTGCGAGTTGACTATGTAGCA
Found at i:35091042 original size:27 final size:27
Alignment explanation
Indices: 35090960--35091108 Score: 228
Period size: 27 Copynumber: 5.5 Consensus size: 27
35090950 TAAATTGTGC
*
35090960 AGCACTAAGTGTGCGAATTGA-TATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
35090986 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
35091014 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
35091041 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
* *
35091069 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
35091096 AGCACTGAGTGTG
1 AGCACTAAGTGTG
35091109 GGACTTAATA
Statistics
Matches: 116, Mismatches: 4, Indels: 5
0.93 0.03 0.04
Matches are distributed among these distances:
26 16 0.14
27 52 0.45
28 48 0.41
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:35093389 original size:32 final size:32
Alignment explanation
Indices: 35093348--35093426 Score: 88
Period size: 33 Copynumber: 2.4 Consensus size: 32
35093338 GGTCGTGTAA
*
35093348 GCCACACGGGCTAGACCAAAT-TGGGGGTGTGG
1 GCCACACGGGC-AAACCAAATCTGGGGGTGTGG
* * *
35093380 GCCACACGGGGCAAAGCTAATCTGGGTGTGTGG
1 GCCACAC-GGGCAAACCAAATCTGGGGGTGTGG
35093413 GCCCACACGGGCAA
1 G-CCACACGGGCAA
35093427 GCCACACGGG
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
32 13 0.32
33 21 0.52
34 6 0.15
ACGTcount: A:0.23, C:0.25, G:0.38, T:0.14
Consensus pattern (32 bp):
GCCACACGGGCAAACCAAATCTGGGGGTGTGG
Found at i:35095905 original size:25 final size:25
Alignment explanation
Indices: 35095876--35095925 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
35095866 AGCATATTAT
*
35095876 TGATGAAGATG-GCTAGCATGCTGCA
1 TGATGAAG-TGAGCCAGCATGCTGCA
35095901 TGATGAAGTGAGCCAGCATGCTGCA
1 TGATGAAGTGAGCCAGCATGCTGCA
35095926 GCACAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 2 0.09
25 21 0.91
ACGTcount: A:0.28, C:0.18, G:0.32, T:0.22
Consensus pattern (25 bp):
TGATGAAGTGAGCCAGCATGCTGCA
Found at i:35120504 original size:55 final size:55
Alignment explanation
Indices: 35120443--35120619 Score: 261
Period size: 55 Copynumber: 3.3 Consensus size: 55
35120433 ATATTAAGTC
* * * *
35120443 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
35120498 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
* * *
35120553 CGCACACTTAGTGCTACATAGTCAACTTGCACACTTAGTGCTACAT--T-TAATT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
35120605 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
35120620 GCACAATTTA
Statistics
Matches: 114, Mismatches: 8, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
52 18 0.16
53 1 0.01
55 95 0.83
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:35120507 original size:28 final size:27
Alignment explanation
Indices: 35120443--35120619 Score: 259
Period size: 27 Copynumber: 6.6 Consensus size: 27
35120433 ATATTAAGTC
* * *
35120443 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
35120470 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAGTCA-ACT
35120498 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
35120525 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
35120553 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* * *
35120580 TGCACACTTAGTGCTACAT--TTAATT
1 CGCACACTTAGTGCTACATAGTCAACT
35120605 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
35120620 GCACAATTTA
Statistics
Matches: 141, Mismatches: 7, Indels: 6
0.92 0.05 0.04
Matches are distributed among these distances:
25 18 0.13
27 70 0.50
28 53 0.38
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:35126920 original size:29 final size:29
Alignment explanation
Indices: 35126863--35127019 Score: 212
Period size: 29 Copynumber: 5.5 Consensus size: 29
35126853 ATAGTAAGTC
* *
35126863 CGCACACTTAGT-TTTATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
35126891 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
35126920 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
*
35126949 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
* * * * *
35126977 TGCACACTTAGTGCTATGCA-ATTTAAACC
1 CGCACACTTAGTGCT-TACATAATCAAACT
35127006 CGCACACTTAGTGC
1 CGCACACTTAGTGC
35127020 CAATCTCATG
Statistics
Matches: 116, Mismatches: 10, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
28 38 0.33
29 76 0.66
30 2 0.02
ACGTcount: A:0.33, C:0.26, G:0.11, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCAAACT
Found at i:35126971 original size:57 final size:58
Alignment explanation
Indices: 35126863--35127019 Score: 212
Period size: 57 Copynumber: 2.7 Consensus size: 58
35126853 ATAGTAAGTC
* *
35126863 CGCACACTTAGT-TTTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
*
35126920 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
* * * * *
35126977 TGCACACTTAGTGCTATGCA-ATTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCT-TACATAATCAAACTCGCACACTTAGTGC
35127020 CAATCTCATG
Statistics
Matches: 90, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
57 59 0.66
58 31 0.34
ACGTcount: A:0.33, C:0.26, G:0.11, T:0.29
Consensus pattern (58 bp):
CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
Found at i:35129982 original size:42 final size:42
Alignment explanation
Indices: 35129870--35130024 Score: 168
Period size: 42 Copynumber: 3.7 Consensus size: 42
35129860 TATTACACCA
* * ** * *
35129870 ATGCCATATCCCAGATATGGTCATACATGGGATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATTG
* *
35129912 ATGCCAATAACCTAGCA-ATGGTCTTACACGAAATCTCATATTG
1 ATGCC-ATATCCCAG-ATATGGTCTTACACGAAATCTCATATTG
*
35129955 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATAATG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATTG
* * * *
35129997 CTGTCATATCCCAGATATAGACTTACAC
1 ATGCCATATCCCAGATATGGTCTTACAC
35130025 ATAGCCTCGG
Statistics
Matches: 95, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
41 1 0.01
42 61 0.64
43 32 0.34
44 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATTG
Found at i:35134703 original size:17 final size:18
Alignment explanation
Indices: 35134677--35134712 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
35134667 CAATTTGGGC
35134677 CGTGTAGGCC-ACACGGG
1 CGTGTAGGCCAACACGGG
*
35134694 CGTGTGGGCCAACACGGG
1 CGTGTAGGCCAACACGGG
35134712 C
1 C
35134713 AAGCCACATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.17, C:0.31, G:0.42, T:0.11
Consensus pattern (18 bp):
CGTGTAGGCCAACACGGG
Found at i:35137779 original size:46 final size:46
Alignment explanation
Indices: 35137627--35137889 Score: 216
Period size: 46 Copynumber: 5.6 Consensus size: 46
35137617 ATTTGTTTGT
* * * *
35137627 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCAACGGCCTCGA-GACGA
* * * *
35137673 GTGCTAGTGTAAGACGATGTCTGGGACATGGCATCGGCATTGAGACGA
1 GAGCTAGTGTAAGAC-ATGTCTGGGACAT-GCAACGGCCTCGAGACGA
35137721 GAGCTAGTGTAAGACATGTCTGGGACATGCAACGGCCTCGAGACGTA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCAACGGCCTCGAGACG-A
* * * *
35137768 -AGCTAGGGTAAGACATG-CTTGGGACAAGTAACGG-CTACGAGATGA
1 GAGCTAGTGTAAGACATGTC-TGGGACATGCAACGGCCT-CGAGACGA
* * * * *
35137813 TAG-TCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGAGA-TA
1 GAGCT-AGTGTAAGA-CATGTCTGGGACAT-GCAACGGCCTCGAGACGA
*
35137859 TGAGCCAGTGTAAGACCATGTCTGGGACATG
1 -GAGCTAGTGTAAGA-CATGTCTGGGACATG
35137890 GCATTGGCAC
Statistics
Matches: 181, Mismatches: 22, Indels: 28
0.78 0.10 0.12
Matches are distributed among these distances:
45 5 0.03
46 75 0.41
47 69 0.38
48 31 0.17
49 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.32, T:0.22
Consensus pattern (46 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCAACGGCCTCGAGACGA
Found at i:35137857 original size:47 final size:47
Alignment explanation
Indices: 35137626--35137893 Score: 243
Period size: 47 Copynumber: 5.7 Consensus size: 47
35137616 CATTTGTTTG
* *
35137626 TGAGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGC-C-ACATTA
1 TGAGCTAGTGTAAGACATGTCTGGGACATGGCATCGGCTCGAGATGA
* *
35137670 TGAGTGCTAGTGTAAGACGATGTCTGGGACATGGCATCGGCATTGAGACGA
1 TGA--GCTAGTGTAAGAC-ATGTCTGGGACATGGCATCGGC-TCGAGATGA
* *
35137721 -GAGCTAGTGTAAGACATGTCTGGGACAT-GCAACGGCCTCGAGACG-
1 TGAGCTAGTGTAAGACATGTCTGGGACATGGCATCGG-CTCGAGATGA
* * * * *
35137766 TAAGCTAGGGTAAGACATG-CTTGGGACA-AGTAACGGCTACGAGATGA
1 TGAGCTAGTGTAAGACATGTC-TGGGACATGGCATCGGCT-CGAGATGA
* *
35137813 T-AG-TCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGAT-A
1 TGAGCT-AGTGTAAGA-CATGTCTGGGACATGGCATCGGCTCGAGATGA
*
35137859 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
1 TGAGCTAGTGTAAGA-CATGTCTGGGACATGGCAT
35137894 TGGCACCTTA
Statistics
Matches: 188, Mismatches: 17, Indels: 35
0.78 0.07 0.15
Matches are distributed among these distances:
44 3 0.02
45 4 0.02
46 73 0.39
47 75 0.40
48 28 0.15
50 2 0.01
51 3 0.02
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.22
Consensus pattern (47 bp):
TGAGCTAGTGTAAGACATGTCTGGGACATGGCATCGGCTCGAGATGA
Found at i:35144928 original size:140 final size:139
Alignment explanation
Indices: 35144683--35144937 Score: 352
Period size: 140 Copynumber: 1.8 Consensus size: 139
35144673 GTGAGCCAAT
* * * * *
35144683 GTAAGACATGTCTGGGACATGCATCGGCCATATTATGAGAGCCAGTGTAAGACGATGTCTGGGAC
1 GTAAGACATGCCTGGGACATGCAACGGCCAGATGATGAGAGCCAGTGTAAGACCATGTCTGGGAC
* *
35144748 ATGGCATCAGTATTGAGATGAGAGCTAGTTTAAGACATGTCTGGGACATGCATCGGCCTCGAGAC
66 ATGGCATCAG-ATTGAGATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAC
35144813 TTAAGCCAGG
130 TTAAGCCAGG
* * *
35144823 GTAAGACATGCCTGGGACATGCAACGGCTACGA-GATGATAGTCAGTGTAAGACCATGTCTGGGA
1 GTAAGACATGCCTGGGACATGCAACGGCCA-GATGATGAGAGCCAGTGTAAGACCATGTCTGGGA
**
35144887 CATGGCATCA-ACTTGAGATTTGAGCCAGTGTAAGACCATGTCTGGGACATG
65 CATGGCATCAGA-TTGAGATGAGAGCCAGTGTAAGA-CATGTCTGGGACATG
35144938 GCATTGGCAT
Statistics
Matches: 100, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
138 1 0.01
139 19 0.19
140 79 0.79
141 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (139 bp):
GTAAGACATGCCTGGGACATGCAACGGCCAGATGATGAGAGCCAGTGTAAGACCATGTCTGGGAC
ATGGCATCAGATTGAGATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACT
TAAGCCAGG
Found at i:35144938 original size:47 final size:47
Alignment explanation
Indices: 35144674--35144941 Score: 196
Period size: 47 Copynumber: 5.7 Consensus size: 47
35144664 CATTTGTTTG
* ** *
35144674 TGAGCCAATGTAAGA-CATGTCTGGGACAT-GCATCGGC-C-ATATT
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACTCGAGATT
* * *
35144717 ATGAGAGCCAGTGTAAGACGATGTCTGGGACATGGCATCAGTA-TTGAGATG
1 -T--GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCA--ACTCGAGATT
* * * ** *
35144768 AGAGCTAGTTTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACT
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-AACTCGAGATT
* * * * ** *
35144814 TAAGCCAGGGTAAGA-CATGCCTGGGACAT-GCAACGGCTACGAGATGA
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACT-CGAGAT-T
* *
35144861 T-AGTCAGTGTAAGACCATGTCTGGGACATGGCATCAACTTGAGATT
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACTCGAGATT
35144907 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
35144942 TGGCATCTTA
Statistics
Matches: 174, Mismatches: 35, Indels: 27
0.74 0.15 0.11
Matches are distributed among these distances:
44 1 0.01
45 3 0.02
46 67 0.39
47 77 0.44
48 23 0.13
51 3 0.02
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.23
Consensus pattern (47 bp):
TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACTCGAGATT
Found at i:35152211 original size:77 final size:75
Alignment explanation
Indices: 35152117--35152260 Score: 182
Period size: 77 Copynumber: 1.9 Consensus size: 75
35152107 TACCTATACT
*
35152117 ATGGCCCGAAGCCAAATCAAGGT-AACTTATATCCGAAGTACTAATATCATGGCCCGAAGCCAAA
1 ATGGCCCGAAGCCAAATC--GGTAAACTTACATCCGAAGTACT-ATATCATGGCCCGAAGCCAAA
35152181 TCAACTGATATTC
63 TCAACTGATATTC
* * * * * *
35152194 ATGGCTCGAAGCCAAATCGGTACAACTTGCATCTGAAGTGCTATATCATGGCCTGAAGCCAACTC
1 ATGGCCCGAAGCCAAATCGGTA-AACTTACATCCGAAGTACTATATCATGGCCCGAAGCCAAATC
35152259 AA
65 AA
35152261 TGTATCCCCT
Statistics
Matches: 58, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
75 3 0.05
76 23 0.40
77 32 0.55
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.22
Consensus pattern (75 bp):
ATGGCCCGAAGCCAAATCGGTAAACTTACATCCGAAGTACTATATCATGGCCCGAAGCCAAATCA
ACTGATATTC
Found at i:35153863 original size:50 final size:50
Alignment explanation
Indices: 35153788--35153888 Score: 175
Period size: 50 Copynumber: 2.0 Consensus size: 50
35153778 CTCGTAAGAG
*
35153788 TTAATTCGCCCGATAACACATCAGATGCTCATAAGAGCTAATCCATCCGA
1 TTAATTCACCCGATAACACATCAGATGCTCATAAGAGCTAATCCATCCGA
* *
35153838 TTAATTCACCCGATAACACGTCAGATGCTTATAAGAGCTAATCCATCCGA
1 TTAATTCACCCGATAACACATCAGATGCTCATAAGAGCTAATCCATCCGA
35153888 T
1 T
35153889 AACATGCCAG
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.34, C:0.27, G:0.14, T:0.26
Consensus pattern (50 bp):
TTAATTCACCCGATAACACATCAGATGCTCATAAGAGCTAATCCATCCGA
Found at i:35153900 original size:37 final size:37
Alignment explanation
Indices: 35153847--35153967 Score: 154
Period size: 37 Copynumber: 3.3 Consensus size: 37
35153837 ATTAATTCAC
*
35153847 CCGATAACACGTCAGATGCTTATAAGAGCTAATCCAT
1 CCGATAACACGCCAGATGCTTATAAGAGCTAATCCAT
*
35153884 CCGATAACATGCCAGATGCTCT-TAAGAGCTAATCCAT
1 CCGATAACACGCCAGATGCT-TATAAGAGCTAATCCAT
* * * * *
35153921 TCGATAACACGCTAGATGCTCATAAGAGCTAGTCCAA
1 CCGATAACACGCCAGATGCTTATAAGAGCTAATCCAT
*
35153958 CCGAAAACAC
1 CCGATAACAC
35153968 ACCAAAACAG
Statistics
Matches: 72, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
37 71 0.99
38 1 0.01
ACGTcount: A:0.36, C:0.26, G:0.17, T:0.21
Consensus pattern (37 bp):
CCGATAACACGCCAGATGCTTATAAGAGCTAATCCAT
Found at i:35173685 original size:21 final size:21
Alignment explanation
Indices: 35173644--35173685 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
35173634 TCCCCCACCT
*
35173644 CCCCCGATTCCTCAATCTGTA
1 CCCCCGATTCCTCAAGCTGTA
*
35173665 CCCCCGATGT-CTCAAGGTGTA
1 CCCCCGAT-TCCTCAAGCTGTA
35173686 GATCTGATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 17 0.94
22 1 0.06
ACGTcount: A:0.19, C:0.38, G:0.17, T:0.26
Consensus pattern (21 bp):
CCCCCGATTCCTCAAGCTGTA
Found at i:35177092 original size:47 final size:47
Alignment explanation
Indices: 35177014--35177336 Score: 328
Period size: 47 Copynumber: 6.5 Consensus size: 47
35177004 CCTTGCGGGA
* * * * * *
35177014 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
35177061 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
35177108 CTTATCACATATATACACATATATATACTTTTCACATTCATCACATCGGCCTATTAGG-
1 CTTATCACATATAT--AC--------AC-TTTCACATTCATCACATCGGCC-ATTAGGC
*
35177166 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
35177213 CTTATCACATATATATACACTTTCATATTCA--ACATCGGCCATTTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCA-TTAGGC
* * *
35177261 CTTATCACATATATATACACTTTCACATTTATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
35177310 CTTATCACATATATATACACTTTCACA
1 CTTATCAC--ATATATACACTTTCACA
35177337 CATTCATATT
Statistics
Matches: 241, Mismatches: 17, Indels: 34
0.83 0.06 0.12
Matches are distributed among these distances:
46 6 0.02
47 89 0.37
48 36 0.15
49 55 0.23
50 9 0.04
56 2 0.01
57 2 0.01
58 36 0.15
59 6 0.02
ACGTcount: A:0.29, C:0.28, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:35177214 original size:105 final size:100
Alignment explanation
Indices: 35177065--35177324 Score: 336
Period size: 97 Copynumber: 2.6 Consensus size: 100
35177055 CTCGGCCCTG
*
35177065 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACATAT
1 TCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATAT--A-ATAT
*
35177130 ATATACTTTTCACATTCATCACATCGGCC-TATTAGG-CTTA
63 ATACAC-TTTCACATTCA--ACATCGGCCAT-TTAGGCCTTA
35177170 TCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCAC----AT-ATATATA
1 TCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAATATATA
* *
35177230 CACTTTCATATTCAACATCGGCCATTTCGGCCTTA
66 CACTTTCACATTCAACATCGGCCATTTAGGCCTTA
* *
35177265 TCACATATATATACACTTTCACATTTATCACATTGGCCATTCGGCCTTATCACATATATA
1 TCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
35177325 TACACTTTCA
Statistics
Matches: 140, Mismatches: 6, Indels: 21
0.84 0.04 0.13
Matches are distributed among these distances:
94 13 0.09
95 9 0.06
96 10 0.07
97 54 0.39
101 4 0.03
105 50 0.36
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.35
Consensus pattern (100 bp):
TCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAATATATA
CACTTTCACATTCAACATCGGCCATTTAGGCCTTA
Found at i:35177229 original size:49 final size:49
Alignment explanation
Indices: 35177123--35177336 Score: 305
Period size: 49 Copynumber: 4.4 Consensus size: 49
35177113 CACATATATA
*
35177123 CACATATATATAC-TTTTCACATTCATCACATCGGCCTATTAGG-CTTAT
1 CACATATATATACACTTTCACATTCATCACATCGGCC-ATTAGGCCTTAT
*
35177171 CAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTAT
1 CACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
* *
35177218 CACATATATATACACTTTCATATTCA--ACATCGGCCATTTCGGCCTTAT
1 CACATATATATACACTTTCACATTCATCACATCGGCCA-TTAGGCCTTAT
* * *
35177266 CACATATATATACACTTTCACATTTATCACATTGGCCATTCGGCCTTAT
1 CACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
35177315 CACATATATATACACTTTCACA
1 CACATATATATACACTTTCACA
35177337 CATTCATATT
Statistics
Matches: 151, Mismatches: 8, Indels: 13
0.88 0.05 0.08
Matches are distributed among these distances:
46 14 0.09
47 38 0.25
48 37 0.25
49 53 0.35
50 9 0.06
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (49 bp):
CACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
Found at i:35178238 original size:24 final size:25
Alignment explanation
Indices: 35178198--35178247 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
35178188 AAGGAATTCG
35178198 CACACCACAGTGCCTC-TAATCATT
1 CACACCACAGTGCCTCTTAATCATT
* *
35178222 CACACACATAGTG-CTCTTATTCATT
1 CACAC-CACAGTGCCTCTTAATCATT
35178247 C
1 C
35178248 GTTATTACAC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
24 8 0.36
25 14 0.64
ACGTcount: A:0.28, C:0.34, G:0.08, T:0.30
Consensus pattern (25 bp):
CACACCACAGTGCCTCTTAATCATT
Found at i:35178456 original size:40 final size:40
Alignment explanation
Indices: 35178411--35178771 Score: 510
Period size: 40 Copynumber: 9.1 Consensus size: 40
35178401 CGAATACACG
* * * *
35178411 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * * * *
35178451 ACACCAGCACGAATGCTCTTCGAGG-TTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCG-GGACTTAGCCCGGATACA
* * *
35178491 TTACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
35178531 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
35178571 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * *
35178611 TCACTAACATGAATGCTCTTCAGGACTTAGCCCGGGTACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
35178651 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
35178691 TCACTAGCATGAATGCTCTTCGGGACTCAGCCCGGGTACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
35178731 TCATTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT-CA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
35178770 TC
1 TC
35178772 GTCGAGACCT
Statistics
Matches: 288, Mismatches: 31, Indels: 5
0.89 0.10 0.02
Matches are distributed among these distances:
39 5 0.02
40 281 0.98
41 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:35181073 original size:47 final size:47
Alignment explanation
Indices: 35180995--35181512 Score: 712
Period size: 49 Copynumber: 10.6 Consensus size: 47
35180985 CCCTTCGGGA
* * * *
35180995 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
35181042 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
35181089 CTTATCACATATATACACATATACACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC----AT----ATAT--ACACTTTCACATTCATCACATTGGCCATTCGGC
* *
35181146 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
35181193 CTTATCACATATATTACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATA-TACACTTTCACATTCATCACATTGGCCATTCGGC
35181241 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
35181290 CTTATCACATTTATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACA--TATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
35181339 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
35181386 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
35181435 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
35181484 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
35181513 TATTCAAAAT
Statistics
Matches: 436, Mismatches: 18, Indels: 32
0.90 0.04 0.07
Matches are distributed among these distances:
47 135 0.31
48 40 0.09
49 208 0.48
50 5 0.01
51 2 0.00
53 2 0.00
55 4 0.01
57 40 0.09
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:35181406 original size:145 final size:144
Alignment explanation
Indices: 35180995--35181512 Score: 797
Period size: 145 Copynumber: 3.5 Consensus size: 144
35180985 CCCTTCGGGA
* * * * *
35180995 CTTATCACATT-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACA
1 CTTATCACATTATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA
35181059 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACATATACACACTTTCACA
66 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATAT----ATAT--ACACTTTCACA
* * *
35181124 TTCATCACATCGGCTATTAGGC
123 TTCATCACATTGGCCATTCGGC
* *
35181146 CTTATCACA-TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATTAC
1 CTTATCACATTATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATA-TAC
* *
35181210 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCA
65 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
35181275 CATTGGCCATTCGGC
130 CATTGGCCATTCGGC
35181290 CTTATCACATTTATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACA-TTATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
35181355 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
65 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
35181420 CATTGGCCATTCGGC
130 CATTGGCCATTCGGC
35181435 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAT
1 CTTATCACAT-TATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATAT
35181500 ACACTTTCACATT
63 ACACTTTCACATT
35181513 TATTCAAAAT
Statistics
Matches: 344, Mismatches: 16, Indels: 18
0.91 0.04 0.05
Matches are distributed among these distances:
144 40 0.12
145 136 0.40
146 53 0.15
147 19 0.06
150 5 0.01
151 51 0.15
152 40 0.12
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (144 bp):
CTTATCACATTATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA
CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC
ATTGGCCATTCGGC
Found at i:35196021 original size:46 final size:45
Alignment explanation
Indices: 35195968--35196137 Score: 179
Period size: 46 Copynumber: 3.7 Consensus size: 45
35195958 GTGTGTGCTA
35195968 GTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCT
1 GTGTAAGACATGTCTGGGACATGCATCGGCC-CATTATGAGAGCCT
*
35196014 GTGTAAGACCATGTCTGGGACATGGCATCGG--CATTGA-GACGAGAGCT
1 GTGTAAGA-CATGTCTGGGACAT-GCATCGGCCCATT-ATGA-GAG-CCT
* * *
35196061 AGTGTAAGACATGTCTGGGACATGCATTGGCCTCGA-GATGTA-AGCCA
1 -GTGTAAGACATGTCTGGGACATGCATCGGCC-C-ATTATG-AGAGCCT
35196108 GTGTAAGACATGTCTGGGACATGCATCGGC
1 GTGTAAGACATGTCTGGGACATGCATCGGC
35196138 TACGAGGTGT
Statistics
Matches: 106, Mismatches: 6, Indels: 24
0.78 0.04 0.18
Matches are distributed among these distances:
45 6 0.06
46 47 0.44
47 31 0.29
48 18 0.17
49 2 0.02
50 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (45 bp):
GTGTAAGACATGTCTGGGACATGCATCGGCCCATTATGAGAGCCT
Found at i:35196198 original size:140 final size:140
Alignment explanation
Indices: 35195967--35196225 Score: 362
Period size: 140 Copynumber: 1.8 Consensus size: 140
35195957 TGTGTGTGCT
* * *
35195967 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCTGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACA-GAGGAGAGCCAGTGTAAGACCATGTCTGG
*
35196032 GACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAGA-CATGTCTGGGACATGCATTGGCCTCG
65 GACATGGCATCGACATTGAGACGAGAGCTAGTGTAAGACCATGTCTGGGACATGCATTGGCCTCG
35196096 AGATGTAAGCC
130 AGATGTAAGCC
* * * *
35196107 AGTGTAAGACATGTCTGGGACATGCATCGGCTAC-GAGGTGTGTCAGTGTAAGACCATGTCTGGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAGAGGAGAGCCAGTGTAAGACCATGTCTGGG
* * *
35196171 ACATGGCATCGACA-TGTATATGTGAGAGCTAGTGTAAGACCATGTTTGGGACATG
66 ACATGGCATCGACATTG-AGA--CGAGAGCTAGTGTAAGACCATGTCTGGGACATG
35196226 GAGTCAGCCT
Statistics
Matches: 104, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
137 2 0.02
138 39 0.38
140 49 0.47
141 14 0.13
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.24
Consensus pattern (140 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACAGAGGAGAGCCAGTGTAAGACCATGTCTGGG
ACATGGCATCGACATTGAGACGAGAGCTAGTGTAAGACCATGTCTGGGACATGCATTGGCCTCGA
GATGTAAGCC
Found at i:35196206 original size:94 final size:93
Alignment explanation
Indices: 35195958--35196225 Score: 266
Period size: 94 Copynumber: 2.9 Consensus size: 93
35195948 TGGGCGATGT
* * *
35195958 GTGTGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCA-CAT-TATGAGAGCCT-GTGTAA
1 GTGTGT-CTAGTGTAAGACATGTCTGGGACATGCATC-GACATGATATGTGAGAG-CTAGTGTAA
35196020 GACCATGTCTGGGACATGGCATCGGCATTGA-GAC
63 GACCATGTCTGGGACAT-GCATCGGC--T-ACGAC
* * * * * * *
35196054 GAGAG-CTAGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGATGT-A-AGCCAGTGTAAGA
1 GTGTGTCTAGTGTAAGACATGTCTGGGACATGCATCGACAT-GATATGTGAGAGCTAGTGTAAGA
*
35196116 -CATGTCTGGGACATGCATCGGCTACGAG
65 CCATGTCTGGGACATGCATCGGCTACGAC
35196144 GTGTGTC-AGTGTAAGACCATGTCTGGGACATGGCATCGACATGTATATGTGAGAGCTAGTGTAA
1 GTGTGTCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGACATG-ATATGTGAGAGCTAGTGTAA
*
35196208 GACCATGTTTGGGACATG
63 GACCATGTCTGGGACATG
35196226 GAGTCAGCCT
Statistics
Matches: 142, Mismatches: 18, Indels: 25
0.77 0.10 0.14
Matches are distributed among these distances:
89 1 0.01
90 15 0.11
91 16 0.11
92 20 0.14
93 18 0.13
94 51 0.36
95 16 0.11
96 5 0.04
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (93 bp):
GTGTGTCTAGTGTAAGACATGTCTGGGACATGCATCGACATGATATGTGAGAGCTAGTGTAAGAC
CATGTCTGGGACATGCATCGGCTACGAC
Found at i:35207000 original size:40 final size:40
Alignment explanation
Indices: 35206943--35207172 Score: 336
Period size: 40 Copynumber: 5.8 Consensus size: 40
35206933 ATTTGAATAC
* * * *
35206943 ATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTTT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGA-TAT
35206983 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
35207023 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* *
35207063 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGATGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* * *
35207103 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* * *
35207143 ACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
35207173 TTGTGGTTAT
Statistics
Matches: 176, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
40 173 0.98
41 3 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
Found at i:35215557 original size:40 final size:40
Alignment explanation
Indices: 35215500--35215689 Score: 247
Period size: 40 Copynumber: 4.8 Consensus size: 40
35215490 ATTTGAATAC
* * * *
35215500 ATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTTT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGATGA-TAT
*
35215540 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGATGATAT
*
35215580 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGATGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGATGATAT
* * * *
35215620 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGATGATAT
* * *
35215660 ACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
35215690 TTGTGGTTAT
Statistics
Matches: 136, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
40 133 0.98
41 3 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGATGATAT
Found at i:35215633 original size:80 final size:80
Alignment explanation
Indices: 35215500--35215709 Score: 280
Period size: 80 Copynumber: 2.6 Consensus size: 80
35215490 ATTTGAATAC
* * * *
35215500 ATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATT
*
35215565 TGTGCAAGTTGATAT
66 CGTGCAAGTTGATAT
35215580 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGATGA-TATATCCGGGCTAAGACCCGAAGGCAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATTATATCCGGGCTAAGACCCGAAGGCAT
* *
35215644 TCGTGCGAGTTGCTAT
65 TCGTGCAAGTTGATAT
* * * ** *
35215660 ACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAA
35215710 ATTCCGAAGA
Statistics
Matches: 115, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
79 8 0.07
80 104 0.90
81 3 0.03
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTTGATAT
Found at i:35231056 original size:40 final size:40
Alignment explanation
Indices: 35230804--35231049 Score: 406
Period size: 40 Copynumber: 6.2 Consensus size: 40
35230794 AACCCAAGTA
* *
35230804 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
35230843 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
35230883 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
35230923 CCTTTGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
35230963 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
35231003 CCTTCGGGACTTAGCCCGAATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
35231043 CCTTCGG
1 CCTTCGG
35231050 ATCTTAGTCC
Statistics
Matches: 196, Mismatches: 9, Indels: 3
0.94 0.04 0.01
Matches are distributed among these distances:
39 13 0.07
40 182 0.93
41 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:35233197 original size:53 final size:53
Alignment explanation
Indices: 35233131--35233281 Score: 205
Period size: 53 Copynumber: 2.8 Consensus size: 53
35233121 CTTACACGGT
* *
35233131 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
* *
35233186 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATATGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
35233239 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
35233282 GCACACTTAT
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
52 1 0.01
53 79 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:35238698 original size:47 final size:47
Alignment explanation
Indices: 35238644--35239021 Score: 508
Period size: 47 Copynumber: 8.1 Consensus size: 47
35238634 TTAGGATTTT
** * * ** *
35238644 ATGTGATGAATGTGAATGTGTATATATGAGATAATTCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
35238691 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGTCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
35238738 ATGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
35238785 ATGTGATGAATATGAACATGCATATGTGTGATAAGGCCGAGTGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
35238832 AAGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCC-
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
35238878 ATATGATGAATGTGAATATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
35238925 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * * *
35238972 ATGTGATGAACGTGGAA-GTGTATATAAGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
35239019 ATG
1 ATG
35239022 CGAAATGTGT
Statistics
Matches: 299, Mismatches: 30, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
46 42 0.14
47 254 0.85
48 3 0.01
ACGTcount: A:0.35, C:0.11, G:0.28, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:35238919 original size:25 final size:25
Alignment explanation
Indices: 35238891--35238966 Score: 61
Period size: 25 Copynumber: 3.2 Consensus size: 25
35238881 TGATGAATGT
*
35238891 GAATATGCATATATGTGATAAGGCC
1 GAATATGCATATATGTGATAAGGCA
* * * *
35238916 GAAT-GGC-CA-ATGTGATGAATG-T
1 GAATATGCATATATGTGAT-AAGGCA
*
35238938 GAACATGCATATATGTGATAAGGCA
1 GAATATGCATATATGTGATAAGGCA
35238963 GAAT
1 GAAT
35238967 GGCCAATGTG
Statistics
Matches: 36, Mismatches: 10, Indels: 10
0.64 0.18 0.18
Matches are distributed among these distances:
22 10 0.28
23 6 0.17
24 6 0.17
25 14 0.39
ACGTcount: A:0.37, C:0.11, G:0.26, T:0.26
Consensus pattern (25 bp):
GAATATGCATATATGTGATAAGGCA
Found at i:35238978 original size:22 final size:22
Alignment explanation
Indices: 35238903--35238978 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
35238893 ATATGCATAT
*
35238903 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCAGAATGGCCA
*
35238925 ATGTGATGAATGTG-A-ACAT-GCATA
1 ATGTGAT-AA-G-GCAGA-ATGGC-CA
35238949 TATGTGATAAGGCAGAATGGCCA
1 -ATGTGATAAGGCAGAATGGCCA
35238972 ATGTGAT
1 ATGTGAT
35238979 GAACGTGGAA
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 15 0.36
23 10 0.24
24 9 0.21
25 8 0.19
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCAGAATGGCCA
Found at i:35239045 original size:140 final size:139
Alignment explanation
Indices: 35238644--35239016 Score: 417
Period size: 140 Copynumber: 2.7 Consensus size: 139
35238634 TTAGGATTTT
* ** * * ** * *
35238644 ATGTGATGAATGTGAATGTGTATATATGAGATAATTCCGAATGG-CAAATGTGATGAATGTGAAC
1 ATGTGATGAATATGAACATGCATATATGTGATAAGGCAGAATGGCCAAA-GTGATGAACGTGAAC
* * * * * * * *
35238708 ATGCATATATGAGATAAGGCCGAATGGTCAATGTGATGAATATGAACATGCATATATGTGATAAG
65 ATGCATATAAGTGATAAAGCCGAATGG-CCATATGACGAATGTG-ATATGCATATATGTGATAAG
35238773 GCCGAATGGCCA
128 GCCGAATGGCCA
* * * *
35238785 ATGTGATGAATATGAACATGCATATGTGTGATAAGGCCGAGTGGCCAAAGTGATGAATGTGAACA
1 ATGTGATGAATATGAACATGCATATATGTGATAAGGCAGAATGGCCAAAGTGATGAACGTGAACA
** * *
35238850 TGCATATGTGTGATAAGGCCGAATGGCCATATGATGAATGTGAATATGCATATATGTGATAAGGC
66 TGCATATAAGTGATAAAGCCGAATGGCCATATGACGAATGTG-ATATGCATATATGTGATAAGGC
35238915 CGAATGGCCA
130 CGAATGGCCA
* *
35238925 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCAATGTGATGAACGTGGAA-
1 ATGTGATGAATATGAACATGCATATATGTGATAAGGCAGAATGGCCAAAGTGATGAACGT-GAAC
* * *
35238989 GTGTATATAAGTGGTAAAGCCGAATGGC
65 ATGCATATAAGTGATAAAGCCGAATGGC
35239017 TAATGCGAAA
Statistics
Matches: 203, Mismatches: 27, Indels: 5
0.86 0.11 0.02
Matches are distributed among these distances:
140 121 0.60
141 78 0.38
142 4 0.02
ACGTcount: A:0.35, C:0.11, G:0.28, T:0.26
Consensus pattern (139 bp):
ATGTGATGAATATGAACATGCATATATGTGATAAGGCAGAATGGCCAAAGTGATGAACGTGAACA
TGCATATAAGTGATAAAGCCGAATGGCCATATGACGAATGTGATATGCATATATGTGATAAGGCC
GAATGGCCA
Found at i:35239057 original size:140 final size:139
Alignment explanation
Indices: 35238644--35239067 Score: 390
Period size: 140 Copynumber: 3.0 Consensus size: 139
35238634 TTAGGATTTT
* ** * * ** * *
35238644 ATGTGATGAATGTGAATGTGTATATATGAGATAATTCCGAATGG-CAAATGTGATGAATGTGAAC
1 ATGTGATGAATATGAACATGCATATATGTGATAAGGCAGAATGGCCAAA-GTGATGAACGTGAAC
* * * * * * * * * *
35238708 ATGCATATATGAGATAAGGCCGAATGGTCAATGTGATGAATATGAACATGCATATATGTGATAAG
65 ATGCATATAAGTGATAAAGCCGAATGG-CCATATGACGAATGTG-ATATGCATATATGAGATAAA
35238773 GCCGAATGGCCA
128 GCCGAATGGCCA
* * * *
35238785 ATGTGATGAATATGAACATGCATATGTGTGATAAGGCCGAGTGGCCAAAGTGATGAATGTGAACA
1 ATGTGATGAATATGAACATGCATATATGTGATAAGGCAGAATGGCCAAAGTGATGAACGTGAACA
** * * * *
35238850 TGCATATGTGTGATAAGGCCGAATGGCCATATGATGAATGTGAATATGCATATATGTGATAAGGC
66 TGCATATAAGTGATAAAGCCGAATGGCCATATGACGAATGTG-ATATGCATATATGAGATAAAGC
35238915 CGAATGGCCA
130 CGAATGGCCA
* *
35238925 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCAATGTGATGAACGTGGAA-
1 ATGTGATGAATATGAACATGCATATATGTGATAAGGCAGAATGGCCAAAGTGATGAACGT-GAAC
* * * * * *
35238989 GTGTATATAAGTGGTAAAGCCGAATGGCTA-ATG-CGAAATGTG-TATGAGATGGATATGAGGTA
65 ATGCATATAAGTGATAAAGCCGAATGGCCATATGACG-AATGTGATATG-CAT--ATATGAGATA
*
35239051 AAGCCGAATGGCTA
126 AAGCCGAATGGCCA
35239065 ATG
1 ATG
35239068 CGAAACGTGT
Statistics
Matches: 243, Mismatches: 34, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
137 4 0.02
138 3 0.01
139 9 0.04
140 145 0.60
141 78 0.32
142 4 0.02
ACGTcount: A:0.35, C:0.10, G:0.29, T:0.26
Consensus pattern (139 bp):
ATGTGATGAATATGAACATGCATATATGTGATAAGGCAGAATGGCCAAAGTGATGAACGTGAACA
TGCATATAAGTGATAAAGCCGAATGGCCATATGACGAATGTGATATGCATATATGAGATAAAGCC
GAATGGCCA
Found at i:35239177 original size:46 final size:46
Alignment explanation
Indices: 35239001--35239160 Score: 275
Period size: 46 Copynumber: 3.5 Consensus size: 46
35238991 GTATATAAGT
*
35239001 GGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGGATATGA
1 GGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGA
35239047 GGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGA
1 GGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGA
* *
35239093 GGTAAAGCCGAATGGCTAATGCAAAACGTGTATGAGATGGATATGT
1 GGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGA
* *
35239139 GGTAAAGCCAAATAGCTAATGC
1 GGTAAAGCCGAATGGCTAATGC
35239161 AAGATATATA
Statistics
Matches: 109, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 109 1.00
ACGTcount: A:0.36, C:0.11, G:0.31, T:0.23
Consensus pattern (46 bp):
GGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGA
Found at i:35244579 original size:40 final size:40
Alignment explanation
Indices: 35244407--35244571 Score: 242
Period size: 40 Copynumber: 4.2 Consensus size: 40
35244397 AACCCAAGTA
* * *
35244407 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
35244446 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* * *
35244486 CCTTCGGGACTTACCCCGGATATAGTAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* *
35244526 CCTTTGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
35244566 CCTTCG
1 CCTTCG
35244572 AATCTTAGTC
Statistics
Matches: 111, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 13 0.12
40 98 0.88
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:35246030 original size:14 final size:14
Alignment explanation
Indices: 35246008--35246050 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
35245998 TTTCATTTTG
35246008 TAACATAAAATTAT
1 TAACATAAAATTAT
*
35246022 TAGCATAAAA-TAT
1 TAACATAAAATTAT
* *
35246035 TAACACAAAATAAT
1 TAACATAAAATTAT
35246049 TA
1 TA
35246051 TAATATGTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
13 11 0.46
14 13 0.54
ACGTcount: A:0.58, C:0.09, G:0.02, T:0.30
Consensus pattern (14 bp):
TAACATAAAATTAT
Found at i:35246044 original size:13 final size:13
Alignment explanation
Indices: 35246008--35246046 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
35245998 TTTCATTTTG
35246008 TAACATAAAATTAT
1 TAACATAAAA-TAT
*
35246022 TAGCATAAAATAT
1 TAACATAAAATAT
*
35246035 TAACACAAAATA
1 TAACATAAAATA
35246047 ATTATAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 13 0.59
14 9 0.41
ACGTcount: A:0.59, C:0.10, G:0.03, T:0.28
Consensus pattern (13 bp):
TAACATAAAATAT
Found at i:35259024 original size:33 final size:33
Alignment explanation
Indices: 35258982--35259048 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
35258972 TTCAGTAAAT
* *
35258982 GTGAATTTTGGCTCTAAGAGGTTGGATTTTTGG
1 GTGAATTTTGGCTCCAAGAGGTTAGATTTTTGG
35259015 GTGAATTTTGGCTCCAAGAGGTTAGATTTTTGG
1 GTGAATTTTGGCTCCAAGAGGTTAGATTTTTGG
35259048 G
1 G
35259049 ACATATTGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.19, C:0.07, G:0.33, T:0.40
Consensus pattern (33 bp):
GTGAATTTTGGCTCCAAGAGGTTAGATTTTTGG
Found at i:35265493 original size:12 final size:12
Alignment explanation
Indices: 35265476--35265500 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
35265466 GAGATTAGAC
35265476 GTTATTAGTCTT
1 GTTATTAGTCTT
35265488 GTTATTAGTCTT
1 GTTATTAGTCTT
35265500 G
1 G
35265501 AATAGGGATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.20, T:0.56
Consensus pattern (12 bp):
GTTATTAGTCTT
Done.