Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 114 of 316
Found at i:35987535 original size:49 final size:48
Alignment explanation
Indices: 35987384--35987607 Score: 203
Period size: 49 Copynumber: 4.6 Consensus size: 48
35987374 TATTTGCGCT
35987384 AGTGTAAGACATGTCTGGGACATGCATCG--ACCACAT-TATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGACACCA-ATATATGAGAGCC
** * *
35987430 AGTGTAACTCATGTCTGGGACATGCATCGAC-CTCGAGATATGCA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGACAC-CAATATATG-AGAGCC
* * *
35987478 AGTGTAAGACCTGTCTGGGACATGTCATTGACACCAATAGATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATG-CATCGACACCAATATATGAGAGCC
* * * *
35987527 AGTGTAAGACCTGTCTGGGACATGGCATC-AGC-CTCGACATATGTA-AGTC
1 AGTGTAAGACATGTCTGGGACAT-GCATCGA-CAC-CAATATATG-AGAGCC
*
35987576 AGTGTAAGACCTGTCTGGGACATGGCATCGAC
1 AGTGTAAGACATGTCTGGGACAT-GCATCGAC
35987608 TTAGATATGT
Statistics
Matches: 149, Mismatches: 16, Indels: 23
0.79 0.09 0.12
Matches are distributed among these distances:
46 27 0.18
47 2 0.01
48 33 0.22
49 83 0.56
50 4 0.03
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACACCAATATATGAGAGCC
Found at i:35987544 original size:97 final size:95
Alignment explanation
Indices: 35987384--35987607 Score: 292
Period size: 98 Copynumber: 2.3 Consensus size: 95
35987374 TATTTGCGCT
* * *
35987384 AGTGTAAGACATGTCTGGGACATGCATCGACCACATTATGAGAGCCAGTGTAACTCATGTCTGGG
1 AGTGTAAGACCTGTCTGGGACATGCATCGACCACATGATGAGAGCCAGTGTAACACATGTCTGGG
*
35987449 ACAT-GCATC-GACCTCGAGATATGCAAGCC
66 ACATGGCATCAG-CCTCGACATATGCAAGCC
* * *
35987478 AGTGTAAGACCTGTCTGGGACATGTCATTGA-CACCAATAGATGAGAGCCAGTGTAAGACCTGTC
1 AGTGTAAGACCTGTCTGGGACATG-CATCGACCA-C-AT-GATGAGAGCCAGTGTAACACATGTC
* *
35987542 TGGGACATGGCATCAGCCTCGACATATGTAAGTC
62 TGGGACATGGCATCAGCCTCGACATATGCAAGCC
35987576 AGTGTAAGACCTGTCTGGGACATGGCATCGAC
1 AGTGTAAGACCTGTCTGGGACAT-GCATCGAC
35987608 TTAGATATGT
Statistics
Matches: 112, Mismatches: 10, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
94 25 0.22
95 6 0.05
96 2 0.02
97 29 0.26
98 48 0.43
99 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (95 bp):
AGTGTAAGACCTGTCTGGGACATGCATCGACCACATGATGAGAGCCAGTGTAACACATGTCTGGG
ACATGGCATCAGCCTCGACATATGCAAGCC
Found at i:35993292 original size:20 final size:19
Alignment explanation
Indices: 35993256--35993306 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
35993246 AAGGGCTATT
*
35993256 TTGTAAA-GTTGTAAAATAA
1 TTGTAAATG-TGTGAAATAA
35993275 GTTGTAAATGTGTGAAATAA
1 -TTGTAAATGTGTGAAATAA
35993295 TTG-AAAT-TGTGA
1 TTGTAAATGTGTGA
35993307 GTTGCTATAG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 3 0.10
20 16 0.55
21 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.37
Consensus pattern (19 bp):
TTGTAAATGTGTGAAATAA
Found at i:35994103 original size:36 final size:34
Alignment explanation
Indices: 35994052--35994136 Score: 102
Period size: 36 Copynumber: 2.5 Consensus size: 34
35994042 TACTTTTGTA
*
35994052 TTCCTACTTCAATTTGGAATTGGATTATTCTCTCTT
1 TTCCTACTTCAATTTGGAATTGAATTATT-T-TCTT
* *
35994088 TTCCTATTTCCATTTGGAATTGAATTATTTTCTT
1 TTCCTACTTCAATTTGGAATTGAATTATTTTCTT
35994122 TT-CT-CTTTCAATTTG
1 TTCCTAC-TTCAATTTG
35994137 ATGAGGGAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
33 10 0.23
34 6 0.14
35 1 0.02
36 26 0.60
ACGTcount: A:0.19, C:0.18, G:0.09, T:0.54
Consensus pattern (34 bp):
TTCCTACTTCAATTTGGAATTGAATTATTTTCTT
Found at i:35999670 original size:36 final size:34
Alignment explanation
Indices: 35999630--35999702 Score: 85
Period size: 36 Copynumber: 2.1 Consensus size: 34
35999620 TACTTTTGTA
*
35999630 TTCCTACTTCA-ATTTAGAATTGCATTATTCTCTCTT
1 TTCCTA-TTCACATTTAGAATTGAATTATT-T-TCTT
* *
35999666 TTCCTATTTACATTTGGAATTGAATTATTTTCTT
1 TTCCTATTCACATTTAGAATTGAATTATTTTCTT
35999700 TTC
1 TTC
35999703 TCTTTTAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
34 7 0.21
35 4 0.12
36 22 0.67
ACGTcount: A:0.22, C:0.18, G:0.07, T:0.53
Consensus pattern (34 bp):
TTCCTATTCACATTTAGAATTGAATTATTTTCTT
Found at i:36001149 original size:49 final size:48
Alignment explanation
Indices: 36001000--36001268 Score: 169
Period size: 49 Copynumber: 5.6 Consensus size: 48
36000990 TATGTGTGCT
* * * *
36001000 AGTGTAAGACATGTCTGGGACAT-GCATTG-GCC-ATATTATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCCGATA-GATGAGAGCC
* * * *
36001046 AGTGTAAGACATGTCTGGGATAT-GCATCGGCCC-TTAGAT-ATGCAAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCCGATAGATGA-G--AGCC
36001094 AGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC-CCGATAGATGAGAGCC
* * * * * * * * *
36001143 AATGTAAGACTTATCTGGGATATTGCATTGGCCTCGATATAT-AGAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACC-CGATAGATGAG-AGCC
* * ** *
36001192 AGTGTAAGACCTATCTGGGACATGGCATCAACTTAGAT-G-TGTGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC-CCGATAGATGAGAGCC
* * *
36001239 ATTGTAAGACCATGTTTGGAACATGGCATC
1 AGTGTAAGACC-TGTCTGGGACATGGCATC
36001269 AGCATCGTAC
Statistics
Matches: 176, Mismatches: 34, Indels: 24
0.75 0.15 0.10
Matches are distributed among these distances:
45 1 0.01
46 30 0.17
47 18 0.10
48 44 0.25
49 74 0.42
50 2 0.01
51 6 0.03
52 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.26
Consensus pattern (48 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACCCGATAGATGAGAGCC
Found at i:36001214 original size:98 final size:97
Alignment explanation
Indices: 36001037--36001220 Score: 255
Period size: 98 Copynumber: 1.9 Consensus size: 97
36001027 TGGCCATATT
* * *
36001037 ATGAGAGCCAGTGTAAGACATGTCTGGGATATGCATCGGCCCTTAGATATGCAAGCCAGTGTAAG
1 ATGAGAGCCAATGTAAGACATATCTGGGATATGCATCGGCCCATAGATATGCAAGCCAGTGTAAG
*
36001102 ACCTGTCTGGGACATGGCATCGACACCGATAG
66 ACCTATCTGGGACATGGCATCGACACCGATAG
* * * *
36001134 ATGAGAGCCAATGTAAGACTTATCTGGGATATTGCATTGGCCTCGATATATA-G-AAGTCAGTGT
1 ATGAGAGCCAATGTAAGACATATCTGGGATA-TGCATCGGCC-C-ATAGATATGCAAGCCAGTGT
36001197 AAGACCTATCTGGGACATGGCATC
63 AAGACCTATCTGGGACATGGCATC
36001221 AACTTAGATG
Statistics
Matches: 76, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
97 28 0.37
98 41 0.54
99 2 0.03
100 5 0.07
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (97 bp):
ATGAGAGCCAATGTAAGACATATCTGGGATATGCATCGGCCCATAGATATGCAAGCCAGTGTAAG
ACCTATCTGGGACATGGCATCGACACCGATAG
Found at i:36001484 original size:76 final size:76
Alignment explanation
Indices: 36001358--36001511 Score: 272
Period size: 76 Copynumber: 2.0 Consensus size: 76
36001348 CAAAATGATA
* * *
36001358 GAACTTATGGCTATGTTGTGAGTGGTACAGGTACTTGCATGAAATTGATGATGTGTGAATTCAAT
1 GAACTTATGGCTATATTGTGAGTGGTACAGGTACTTACATGAAATTGATGAGGTGTGAATTCAAT
*
36001423 TCTTGTTGTAT
66 TCATGTTGTAT
36001434 GAACTTATGGCTATATTGTGAGTGGTACAGGTACTTACATGAAATTGATGAGGTGTGAATTCAAT
1 GAACTTATGGCTATATTGTGAGTGGTACAGGTACTTACATGAAATTGATGAGGTGTGAATTCAAT
36001499 TCATGTTGTAT
66 TCATGTTGTAT
36001510 GA
1 GA
36001512 TTAGTAAGGA
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
76 74 1.00
ACGTcount: A:0.27, C:0.09, G:0.26, T:0.38
Consensus pattern (76 bp):
GAACTTATGGCTATATTGTGAGTGGTACAGGTACTTACATGAAATTGATGAGGTGTGAATTCAAT
TCATGTTGTAT
Found at i:36013114 original size:13 final size:13
Alignment explanation
Indices: 36013096--36013125 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
36013086 GTGCCTAGGA
36013096 TAAAACATGAAAT
1 TAAAACATGAAAT
36013109 TAAAACATGAAAT
1 TAAAACATGAAAT
36013122 TAAA
1 TAAA
36013126 GGATTAGGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.63, C:0.07, G:0.07, T:0.23
Consensus pattern (13 bp):
TAAAACATGAAAT
Found at i:36020363 original size:43 final size:44
Alignment explanation
Indices: 36020189--36020361 Score: 180
Period size: 43 Copynumber: 4.0 Consensus size: 44
36020179 CAGAGGATTT
* * *
36020189 TCGATATGTGATTT-CGTGTAAGTCCACATCTGGGACGTTGGCA
1 TCGATATTTGATTTACGTGTAAGACCACGTCTGGGACGTTGGCA
* * * * *
36020232 TCGAT-TTGAGATTTAGGTGTAAGACCATGTCTGGGACATCGGCA
1 TCGATATT-TGATTTACGTGTAAGACCACGTCTGGGACGTTGGCA
36020276 TCG-TATTTGATTT-CGTGTAAGACC-CTGTCTGGGACAG-TGGCA
1 TCGATATTTGATTTACGTGTAAGACCAC-GTCTGGGAC-GTTGGCA
* *
36020318 TTGATATTTG-TTTACATGTAAGACCACGTCTGGGACGTTGGCA
1 TCGATATTTGATTTACGTGTAAGACCACGTCTGGGACGTTGGCA
36020361 T
1 T
36020362 TGTACGAGCT
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 30 0.28
43 47 0.44
44 29 0.27
ACGTcount: A:0.22, C:0.17, G:0.28, T:0.33
Consensus pattern (44 bp):
TCGATATTTGATTTACGTGTAAGACCACGTCTGGGACGTTGGCA
Found at i:36026042 original size:27 final size:27
Alignment explanation
Indices: 36026012--36026184 Score: 186
Period size: 27 Copynumber: 6.4 Consensus size: 27
36026002 AGGGCAAAAT
* * *
36026012 GGTAATTTTACCCCACAAGGGTATATC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
36026039 GGTAATTATACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
36026066 GGTATTTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
36026093 AGTAATTCTATCCTAC-AGAGGTATTTC
1 GGTAATTCTACCCTACAAG-GGTATTTC
* *
36026120 GGTAATTCTATCCTACATGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** * *
36026147 AATAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
36026174 GGTAATTCTAC
1 GGTAATTCTAC
36026185 AACTTATCCA
Statistics
Matches: 123, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
26 2 0.02
27 120 0.98
28 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:36026086 original size:54 final size:54
Alignment explanation
Indices: 36026012--36026184 Score: 220
Period size: 54 Copynumber: 3.2 Consensus size: 54
36026002 AGGGCAAAAT
* * * * * *
36026012 GGTAATTTTACCCCACAAGGGTATATCGGTAATTATACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
* * * *
36026066 GGTATTTCTACCCTATAAGGGTATTTCAGTAATTCTATCCTACAGAGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
* * * *
36026120 GGTAATTCTATCCTACATGGGTATTTCAATAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
36026174 GGTAATTCTAC
1 GGTAATTCTAC
36026185 AACTTATCCA
Statistics
Matches: 100, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 100 1.00
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
Found at i:36029177 original size:12 final size:12
Alignment explanation
Indices: 36029160--36029184 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
36029150 GCAATTCCAA
36029160 AAAATTTATATC
1 AAAATTTATATC
36029172 AAAATTTATATC
1 AAAATTTATATC
36029184 A
1 A
36029185 TTTATTTCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (12 bp):
AAAATTTATATC
Found at i:36034743 original size:16 final size:19
Alignment explanation
Indices: 36034722--36034758 Score: 53
Period size: 16 Copynumber: 2.1 Consensus size: 19
36034712 TAAGTTTAAG
36034722 AAATAA-ATT-ATTT-TTA
1 AAATAAGATTAATTTATTA
36034738 AAATAAGATTAATTTATTA
1 AAATAAGATTAATTTATTA
36034757 AA
1 AA
36034759 CAATATAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 6 0.33
17 3 0.17
18 4 0.22
19 5 0.28
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (19 bp):
AAATAAGATTAATTTATTA
Found at i:36034752 original size:18 final size:17
Alignment explanation
Indices: 36034704--36034758 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 17
36034694 ATATTAATAT
* *
36034704 AAATAAATTAAGTTTAA
1 AAATAAATTAATTTTTA
36034721 GAAATAAATT-ATTTTTA
1 -AAATAAATTAATTTTTA
36034738 AAATAAGATTAATTTATTA
1 AAATAA-ATTAATTT-TTA
36034757 AA
1 AA
36034759 CAATATAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
16 6 0.19
17 8 0.25
18 13 0.41
19 5 0.16
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (17 bp):
AAATAAATTAATTTTTA
Found at i:36038629 original size:93 final size:93
Alignment explanation
Indices: 36038519--36038689 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
36038509 GCCCATAAGT
* *
36038519 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
36038584 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* * *
36038612 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
36038677 CGAGTTCGGATGC
66 CGAGTTCGGATGC
36038690 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:36038686 original size:46 final size:46
Alignment explanation
Indices: 36038511--36038686 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
36038501 TGTAACCCGC
* * * *
36038511 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * *
36038557 CCATAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* * *
36038607 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
36038650 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
36038687 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
44 1 0.01
45 2 0.02
46 63 0.58
47 29 0.27
48 2 0.02
49 1 0.01
50 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:36039143 original size:30 final size:30
Alignment explanation
Indices: 36039109--36039168 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
36039099 ATTTAATACG
36039109 AACTTTTAAAAAATTACACTTTTGCCCCTA
1 AACTTTTAAAAAATTACACTTTTGCCCCTA
** *
36039139 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTTAAAAAATTACACTTTTGCCCCTA
36039169 GGCTTGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.32, C:0.25, G:0.05, T:0.38
Consensus pattern (30 bp):
AACTTTTAAAAAATTACACTTTTGCCCCTA
Found at i:36055700 original size:27 final size:27
Alignment explanation
Indices: 36055670--36055847 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
36055660 ATATTGAGTC
* * * *
36055670 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
36055697 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
36055724 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
36055752 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
36055779 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
36055806 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
36055833 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36055848 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:36055809 original size:82 final size:81
Alignment explanation
Indices: 36055691--36055846 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
36055681 TGCTATATAA
* *
36055691 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
36055756 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
36055773 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
36055837 CACTTAGTGC
65 CACTTAGTGC
36055847 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:36061782 original size:79 final size:80
Alignment explanation
Indices: 36061614--36061795 Score: 203
Period size: 79 Copynumber: 2.3 Consensus size: 80
36061604 GCTACTCGTT
* **
36061614 CAAATGCCTTCGGGACATAGCCC-GGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCAGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
36061678 GATTTAGTAACTCGCAC
64 GATTAAGTAACTAGCAC
* **
36061695 CAATGCCTTCGGG-CTTAGCCCAGAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAAGCCTTCGGGACTTAGCCCAGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
*
36061758 A-TAAGGTCACTTAGCA-
65 ATTAA-GTAAC-TAGCAC
36061774 CAAAGCCTTCGGGACTTAGCCC
1 CAAAGCCTTCGGGACTTAGCCC
36061796 GGACATCATT
Statistics
Matches: 86, Mismatches: 10, Indels: 11
0.80 0.09 0.10
Matches are distributed among these distances:
78 5 0.06
79 55 0.64
80 23 0.27
81 3 0.03
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCAGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TTAAGTAACTAGCAC
Found at i:36061798 original size:40 final size:39
Alignment explanation
Indices: 36061614--36061798 Score: 205
Period size: 40 Copynumber: 4.7 Consensus size: 39
36061604 GCTACTCGTT
* *
36061614 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-AGTAACTCGCA
* *
36061654 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-TAAGTAACTCGCA
* * *
36061694 CCAATGCCTTCGGG-CTTAGCCCAGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GGATAAGTAACTCGCA
* * *
36061733 CAAATGCCTTC-GGATCTTAGTCCGGATAAGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATAA-GTAAC-TCGCA
36061774 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
36061799 CATCATTCGA
Statistics
Matches: 124, Mismatches: 14, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
38 2 0.02
39 34 0.27
40 76 0.61
41 12 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATAAGTAACTCGCA
Found at i:36069747 original size:39 final size:40
Alignment explanation
Indices: 36069622--36069767 Score: 199
Period size: 40 Copynumber: 3.7 Consensus size: 40
36069612 GCTACTTGTT
*
36069622 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
36069662 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
36069702 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
36069741 CAAATGCCTTC-GGATCTTAGTCCGGAT
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT
36069768 ATGGTCACTT
Statistics
Matches: 93, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
38 2 0.02
39 32 0.34
40 57 0.61
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:36074025 original size:24 final size:24
Alignment explanation
Indices: 36073998--36074044 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
36073988 CTAAGATCCG
*
36073998 AAGGCATTTGTGCGAGATACTAAT
1 AAGGCATTGGTGCGAGATACTAAT
*
36074022 AAGGCATTGGTGCGAGTTACTAA
1 AAGGCATTGGTGCGAGATACTAA
36074045 ATCCGGGTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.32, C:0.13, G:0.28, T:0.28
Consensus pattern (24 bp):
AAGGCATTGGTGCGAGATACTAAT
Found at i:36074077 original size:40 final size:40
Alignment explanation
Indices: 36074022--36074111 Score: 137
Period size: 40 Copynumber: 2.2 Consensus size: 40
36074012 AGATACTAAT
* *
36074022 AAGGCATTGGTGCGAGTTACTA-AATCCGGGTTAAGTCCCG
1 AAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCG
*
36074062 AAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCG
1 AAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCG
36074102 AAGGCATTTG
1 AAGGCATTTG
36074112 AACGAGTAGC
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
40 44 0.96
41 2 0.04
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
AAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCG
Found at i:36079995 original size:24 final size:24
Alignment explanation
Indices: 36079968--36080014 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
36079958 CTAAGATCCG
*
36079968 AAGGCATTTGTGCGAGATACTAAT
1 AAGGCATTGGTGCGAGATACTAAT
*
36079992 AAGGCATTGGTGCGAGTTACTAA
1 AAGGCATTGGTGCGAGATACTAA
36080015 ATCCGGGTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.32, C:0.13, G:0.28, T:0.28
Consensus pattern (24 bp):
AAGGCATTGGTGCGAGATACTAAT
Found at i:36080047 original size:40 final size:40
Alignment explanation
Indices: 36079992--36080081 Score: 137
Period size: 40 Copynumber: 2.2 Consensus size: 40
36079982 AGATACTAAT
* *
36079992 AAGGCATTGGTGCGAGTTACTA-AATCCGGGTTAAGTCCCG
1 AAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCG
*
36080032 AAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCG
1 AAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCG
36080072 AAGGCATTTG
1 AAGGCATTTG
36080082 AACGAGTAGC
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
40 44 0.96
41 2 0.04
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
AAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCG
Found at i:36083984 original size:27 final size:26
Alignment explanation
Indices: 36083951--36084012 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 26
36083941 ATTTATTAAA
*
36083951 ATACCCCTAACTATAAAAATTACCATT
1 ATACCCCTAACT-GAAAAATTACCATT
** *
36083978 ATACCCCTAGGTGCAAAATTACCATT
1 ATACCCCTAACTGAAAAATTACCATT
36084004 ATACCCCTA
1 ATACCCCTA
36084013 GGGTTAATTT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
26 21 0.68
27 10 0.32
ACGTcount: A:0.39, C:0.29, G:0.05, T:0.27
Consensus pattern (26 bp):
ATACCCCTAACTGAAAAATTACCATT
Found at i:36084189 original size:28 final size:28
Alignment explanation
Indices: 36084119--36084211 Score: 145
Period size: 27 Copynumber: 3.4 Consensus size: 28
36084109 AGGAAGCATC
36084119 CTGGTGGCTCTGCCACAAATATCTG-AT
1 CTGGTGGCTCTGCCACAAATATCTGTAT
* *
36084146 CTAGTGGCTCTGCCACAAATATCTGTTT
1 CTGGTGGCTCTGCCACAAATATCTGTAT
36084174 CTGGTGGCTCTGCCAC-AATATCTGTAT
1 CTGGTGGCTCTGCCACAAATATCTGTAT
*
36084201 CTGGTGACTCT
1 CTGGTGGCTCT
36084212 ATCACAATAT
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 44 0.73
28 16 0.27
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.33
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACAAATATCTGTAT
Found at i:36084217 original size:27 final size:27
Alignment explanation
Indices: 36084119--36084223 Score: 140
Period size: 27 Copynumber: 3.9 Consensus size: 27
36084109 AGGAAGCATC
36084119 CTGGTGGCTCTGCCACAAATATCTG-AT
1 CTGGTGGCTCTGCCAC-AATATCTGTAT
* *
36084146 CTAGTGGCTCTGCCACAAATATCTGTTT
1 CTGGTGGCTCTGCCAC-AATATCTGTAT
36084174 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* **
36084201 CTGGTGACTCTATCACAATATCT
1 CTGGTGGCTCTGCCACAATATCT
36084224 ATTCTGGCAG
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
27 54 0.77
28 16 0.23
ACGTcount: A:0.22, C:0.26, G:0.19, T:0.33
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:36084218 original size:55 final size:54
Alignment explanation
Indices: 36084119--36084223 Score: 149
Period size: 55 Copynumber: 1.9 Consensus size: 54
36084109 AGGAAGCATC
* *
36084119 CTGGTGGCTCTGCCACAAATATCTGATCTAGTGGCTCTGCCACAAATATCTGTTT
1 CTGGTGGCTCTGCCACAAATATCTGATCTAGTGACTCTACCAC-AATATCTGTTT
* *
36084174 CTGGTGGCTCTGCCAC-AATATCTGTATCTGGTGACTCTATCACAATATCT
1 CTGGTGGCTCTGCCACAAATATCTG-ATCTAGTGACTCTACCACAATATCT
36084224 ATTCTGGCAG
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
54 15 0.33
55 30 0.67
ACGTcount: A:0.22, C:0.26, G:0.19, T:0.33
Consensus pattern (54 bp):
CTGGTGGCTCTGCCACAAATATCTGATCTAGTGACTCTACCACAATATCTGTTT
Found at i:36089988 original size:27 final size:27
Alignment explanation
Indices: 36089927--36090013 Score: 122
Period size: 27 Copynumber: 3.2 Consensus size: 27
36089917 GGAGGAAGCG
36089927 TTCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCAC-AATATCTGT
* *
36089955 TTTTGGTGGCTCTACCACAATATCTGT
1 TTCTGGTGGCTCTGCCACAATATCTGT
* *
36089982 TTCTGGTGACTCTGTCACAATATCTG-
1 TTCTGGTGGCTCTGCCACAATATCTGT
36090008 TTCTGG
1 TTCTGG
36090014 CAGCCATACT
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
26 6 0.11
27 31 0.58
28 16 0.30
ACGTcount: A:0.17, C:0.23, G:0.21, T:0.39
Consensus pattern (27 bp):
TTCTGGTGGCTCTGCCACAATATCTGT
Found at i:36111426 original size:44 final size:43
Alignment explanation
Indices: 36111376--36111525 Score: 137
Period size: 44 Copynumber: 3.5 Consensus size: 43
36111366 TATGTGTTAT
*
36111376 CGTGTAAGACCACGTCTGGGACATTGGCATTGATTTGTGATTTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGATTT-TGATTTA
* * * * *
36111420 CGTGTAATACCATGTCTGGAACATTGGCGTCG-TATATGATTT-
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGAT-TTTGATTTA
* * *
36111462 CGTGTAAGACC-CTGTCTCGGACAGTGGCATCGATATTTG-GTTA
1 CGTGTAAGACCAC-GTCTGGGACATTGGCATCGAT-TTTGATTTA
* *
36111505 CATGTAAGACCACGTATGGGA
1 CGTGTAAGACCACGTCTGGGA
36111526 TGCTGGCATT
Statistics
Matches: 84, Mismatches: 17, Indels: 11
0.75 0.15 0.10
Matches are distributed among these distances:
42 27 0.32
43 28 0.33
44 29 0.35
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACATTGGCATCGATTTTGATTTA
Found at i:36115653 original size:5 final size:5
Alignment explanation
Indices: 36115643--36115667 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
36115633 GCAAAATTGG
36115643 AAATA AAATA AAATA AAATA AAATA
1 AAATA AAATA AAATA AAATA AAATA
36115668 GCCAAAATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAATA
Found at i:36116663 original size:42 final size:42
Alignment explanation
Indices: 36116596--36116675 Score: 106
Period size: 42 Copynumber: 1.9 Consensus size: 42
36116586 TAGCTCTAAA
* * *
36116596 GCTTCTGTTTAACTCATATGAGTTTCTGTTCAGCTCTTTTGG
1 GCTTCAGTTTAACCCATATGAGTTTCCGTTCAGCTCTTTTGG
* * *
36116638 GCTTCAGTTTAACCCTTATGGGTTTCCGTTTAGCTCTT
1 GCTTCAGTTTAACCCATATGAGTTTCCGTTCAGCTCTT
36116676 ACGAGCTTTC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 32 1.00
ACGTcount: A:0.14, C:0.21, G:0.19, T:0.46
Consensus pattern (42 bp):
GCTTCAGTTTAACCCATATGAGTTTCCGTTCAGCTCTTTTGG
Found at i:36116676 original size:21 final size:21
Alignment explanation
Indices: 36116602--36116698 Score: 61
Period size: 21 Copynumber: 4.6 Consensus size: 21
36116592 TAAAGCTTCT
* * *
36116602 GTTTAACTCATATGAGTTTCT
1 GTTTAACTCTTATGGGTTTCA
* * * *
36116623 GTTCAGCTCTTTTGGGCTTCA
1 GTTTAACTCTTATGGGTTTCA
* *
36116644 GTTTAACCCTTATGGGTTTCC
1 GTTTAACTCTTATGGGTTTCA
* * *
36116665 GTTTAGCTCTTACGAGCTTTC-
1 GTTTAACTCTTATG-GGTTTCA
*
36116686 GTTCAACTCTTAT
1 GTTTAACTCTTAT
36116699 AGGTGTTTAG
Statistics
Matches: 55, Mismatches: 20, Indels: 2
0.71 0.26 0.03
Matches are distributed among these distances:
21 50 0.91
22 5 0.09
ACGTcount: A:0.16, C:0.22, G:0.18, T:0.44
Consensus pattern (21 bp):
GTTTAACTCTTATGGGTTTCA
Found at i:36121001 original size:22 final size:22
Alignment explanation
Indices: 36120976--36121029 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 22
36120966 ACAGCTCAAC
* * *
36120976 GCCATAGACAGGACATCACATA
1 GCCATAAACAGAACAACACATA
36120998 GCCATAAACAGAACAACACATA
1 GCCATAAACAGAACAACACATA
*
36121020 GCCGTAAACA
1 GCCATAAACA
36121030 TCGCAGCAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.46, C:0.28, G:0.15, T:0.11
Consensus pattern (22 bp):
GCCATAAACAGAACAACACATA
Found at i:36121469 original size:41 final size:41
Alignment explanation
Indices: 36121407--36121484 Score: 120
Period size: 41 Copynumber: 1.9 Consensus size: 41
36121397 TAAAAGCCAC
*
36121407 CGGTGGATCCACGATCGTCAAGCAACCATGCGATCCTTAAT
1 CGGTGGATCCACGATCATCAAGCAACCATGCGATCCTTAAT
* * *
36121448 CGGTGGATCCACGGTCATCAAGCAACTATTCGATCCT
1 CGGTGGATCCACGATCATCAAGCAACCATGCGATCCT
36121485 CAATTTCATT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 33 1.00
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (41 bp):
CGGTGGATCCACGATCATCAAGCAACCATGCGATCCTTAAT
Found at i:36121778 original size:27 final size:27
Alignment explanation
Indices: 36121746--36122094 Score: 239
Period size: 27 Copynumber: 13.0 Consensus size: 27
36121736 TTGGTAAATC
*
36121746 TACAAACCAAGGGTATTTCAGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTT
* * * *
36121773 TGCAAACCAATGGTAGTTT-TGTAATTT
1 TACAAATCAAGGGTA-TTTCAGTAATTT
** * *
36121800 TTGAAAGTCAAGGGTATTTCTGTAATAT
1 TACAAA-TCAAGGGTATTTCAGTAATTT
**
36121828 TGTAAATCAAGGGTATTTCTA-TAATTT
1 TACAAATCAAGGGTATTTC-AGTAATTT
* * * * *
36121855 TCCAAATTAATGGTATTTCGGTAATAT
1 TACAAATCAAGGGTATTTCAGTAATTT
* * * *
36121882 TCCAAATTAGGGGTATTT-GGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTT
*
36121908 TACAAATTAAGGGTATTTCAGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTT
**
36121935 TACATGTCAAGGGTATTTC-GATAATTT
1 TACAAATCAAGGGTATTTCAG-TAATTT
* * *
36121962 TACAGGAT-GAGGGTATTTCGGTAATTT
1 TACA-AATCAAGGGTATTTCAGTAATTT
**
36121989 TACAAATCAAGGGTATTTTTGGTAATTT
1 TACAAATCAAGGGTA-TTTCAGTAATTT
* **
36122017 TACAAA-CTAGGGGTATTTTGGTAATTT
1 TACAAATC-AAGGGTATTTCAGTAATTT
* *
36122044 TAC-TATCGAGGGTA-TTCAGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTT
** *
36122069 TGTAAA-CTAAGGGTATTTCAGCAATT
1 TACAAATC-AAGGGTATTTCAGTAATT
36122095 CTACCCTACA
Statistics
Matches: 262, Mismatches: 44, Indels: 32
0.78 0.13 0.09
Matches are distributed among these distances:
25 11 0.04
26 39 0.15
27 166 0.63
28 46 0.18
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
TACAAATCAAGGGTATTTCAGTAATTT
Found at i:36122055 original size:81 final size:81
Alignment explanation
Indices: 36121746--36122094 Score: 220
Period size: 80 Copynumber: 4.3 Consensus size: 81
36121736 TTGGTAAATC
* * * * *
36121746 TACAAACCAAGGGTA-TTTCAGTAATTTTGCAAAC-CAATGGTAGTTTTG-TAATTTTTGAAAG-
1 TACAAATCAAGGGTATTTTCAGTAATTTTAC-AACTCAAGGGTA-TTTCGATAA-TTTT-ACAGA
* * *
36121807 TCAAGGGTATTTCTGTAATAT
62 T-GAGGGTATTTCGGTAATTT
** * * * * * * * * *
36121828 TGTAAATCAAGGGTA-TTTCTA-TAATTTTCCAAATTAATGGTATTTCGGTAATATTCCAAATTA
1 TACAAATCAAGGGTATTTTC-AGTAATTTTACAACTCAAGGGTATTTCGATAATTTTACAGATGA
36121891 GGGGTATTT-GGTAATTT
65 -GGGTATTTCGGTAATTT
* **
36121908 TACAAATTAAGGGTA-TTTCAGTAATTTTACATGTCAAGGGTATTTCGATAATTTTACAGGATGA
1 TACAAATCAAGGGTATTTTCAGTAATTTTACAACTCAAGGGTATTTCGATAATTTTACA-GATGA
36121972 GGGTATTTCGGTAATTT
65 GGGTATTTCGGTAATTT
** * * * *
36121989 TACAAATCAAGGGTATTTTTGGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTAC-TATCG
1 TACAAATCAAGGGTATTTTCAGTAATTTTAC-AACTCAAGGGTATTTCGATAATTTTACAGAT-G
*
36122052 AGGGTA-TTCAGTAATTT
64 AGGGTATTTCGGTAATTT
** *
36122069 TGTAAA-CTAAGGGTA-TTTCAGCAATT
1 TACAAATC-AAGGGTATTTTCAGTAATT
36122095 CTACCCTACA
Statistics
Matches: 213, Mismatches: 42, Indels: 27
0.76 0.15 0.10
Matches are distributed among these distances:
79 10 0.05
80 84 0.39
81 50 0.23
82 66 0.31
83 3 0.01
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (81 bp):
TACAAATCAAGGGTATTTTCAGTAATTTTACAACTCAAGGGTATTTCGATAATTTTACAGATGAG
GGTATTTCGGTAATTT
Found at i:36122082 original size:107 final size:106
Alignment explanation
Indices: 36121746--36122087 Score: 302
Period size: 107 Copynumber: 3.2 Consensus size: 106
36121736 TTGGTAAATC
* * * * * ** *
36121746 TACAAACCAAGGGTATTTCAGTAATTTTGCAAACCAATGGTAGTTTT-GTAATTTTTGAAAGTCA
1 TACAAACTAAGGGTATTTCGGTAATTTTACAAATCAAGGGTA-TTTTGGTAATTTTACAAACT-A
*
36121810 AGGGTATTTCTGTAATATTGTA-AATCAAGGGTATTTCTA-TAATTT
64 AGGGTATTT-TGTAAT-TT-TACTATCAAGGGTATTTC-AGTAATTT
* * * * * * * *
36121855 TCCAAATTAATGGTATTTCGGTAATATTCCAAATTAGGGGTA-TTTGGTAATTTTACAAATTAAG
1 TACAAACTAAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAACTAAG
* *
36121919 GGTATTTCAGTAATTTTACATGTCAAGGGTATTTC-GATAATTT
66 GGTATTT-TGTAATTTTAC-TATCAAGGGTATTTCAG-TAATTT
* *
36121962 TACAGGA-TGAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTTTGGTAATTTTACAAACTA
1 TACA-AACTAAGGGTATTTCGGTAATTTTACAAATCAAGGGTA-TTTTGGTAATTTTACAAACTA
* *
36122026 GGGGTATTTTGGTAATTTTACTATCGAGGGTA-TTCAGTAATTT
64 AGGGTATTTT-GTAATTTTACTATCAAGGGTATTTCAGTAATTT
**
36122069 TGTAAACTAAGGGTATTTC
1 TACAAACTAAGGGTATTTC
36122088 AGCAATTCTA
Statistics
Matches: 188, Mismatches: 34, Indels: 24
0.76 0.14 0.10
Matches are distributed among these distances:
105 2 0.01
106 3 0.02
107 92 0.49
108 23 0.12
109 68 0.36
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.40
Consensus pattern (106 bp):
TACAAACTAAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAACTAAG
GGTATTTTGTAATTTTACTATCAAGGGTATTTCAGTAATTT
Found at i:36122113 original size:27 final size:27
Alignment explanation
Indices: 36122083--36122158 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
36122073 AACTAAGGGT
*
36122083 ATTTCAGCAATTCTACCCTACAGAGGC
1 ATTTCAGTAATTCTACCCTACAGAGGC
* * * *
36122110 ATTTCAGTAATTCTATCGTACAGGGGT
1 ATTTCAGTAATTCTACCCTACAGAGGC
* *
36122137 ATTTCAGTAATACTAGCCTACA
1 ATTTCAGTAATTCTACCCTACA
36122159 AATATGATAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (27 bp):
ATTTCAGTAATTCTACCCTACAGAGGC
Found at i:36124266 original size:11 final size:12
Alignment explanation
Indices: 36124240--36124274 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
36124230 TCAGTTGAGG
36124240 GATTTGAGGAGA
1 GATTTGAGGAGA
36124252 GATTTGAGG-GA
1 GATTTGAGGAGA
*
36124263 GATTTTAGGAGA
1 GATTTGAGGAGA
36124275 AAATCGTGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 10 0.48
12 11 0.52
ACGTcount: A:0.31, C:0.00, G:0.40, T:0.29
Consensus pattern (12 bp):
GATTTGAGGAGA
Found at i:36141141 original size:40 final size:40
Alignment explanation
Indices: 36141058--36141239 Score: 213
Period size: 40 Copynumber: 4.6 Consensus size: 40
36141048 AAACCAAGTA
* * * * ** *
36141058 CCTTCGGGATTTAG-CCGGATATCGCAATTCCCACAAATA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* * * *
36141097 CCTTCCGGACTTAACCCGGATATAGTAACTCGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* * *
36141137 CCTTCGGGTCTTAGCCCGGAAATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* *
36141177 CCTTCGGGTCTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
36141217 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
36141240 CATCCGAATA
Statistics
Matches: 122, Mismatches: 20, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
39 11 0.09
40 111 0.91
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:36149437 original size:40 final size:40
Alignment explanation
Indices: 36149368--36149549 Score: 267
Period size: 40 Copynumber: 4.6 Consensus size: 40
36149358 AAACCAAGTA
* * *
36149368 CCTTCGGGATTTAG-CCGGATATCGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
36149407 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
36149447 CCTTCGGGTCTTAGCCCGGAAATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
36149487 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
36149527 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
36149550 CATCCGAATA
Statistics
Matches: 127, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 12 0.09
40 115 0.91
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:36153568 original size:68 final size:68
Alignment explanation
Indices: 36153496--36153657 Score: 191
Period size: 68 Copynumber: 2.4 Consensus size: 68
36153486 AAGCATGTCT
* ** * *
36153496 TTTGCTATTGTATTGATTTGA-TATAAACATATTAATTGCTACCGCATTGATTTGTTATAAGCAT
1 TTTGCTATTGTATTGATCT-ATTATAAACATATTAATTGCTACCGCATCAAGTTGTTATAAGCAA
36153560 ATTA
65 ATTA
* * *
36153564 TTTGCTATTGTATTGATCTATTATAAGCATATTATTTGCTACCGTATCAAGTTGTTATAAGCAAA
1 TTTGCTATTGTATTGATCTATTATAAACATATTAATTGCTACCGCATCAAGTTGTTATAAGCAAA
36153629 TTA
66 TTA
* * ***
36153632 ATTACTACCATATTGATCTATTATAA
1 TTTGCTATTGTATTGATCTATTATAA
36153658 GCATGTCATA
Statistics
Matches: 80, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
67 1 0.01
68 79 0.99
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.44
Consensus pattern (68 bp):
TTTGCTATTGTATTGATCTATTATAAACATATTAATTGCTACCGCATCAAGTTGTTATAAGCAAA
TTA
Found at i:36153622 original size:34 final size:33
Alignment explanation
Indices: 36153505--36153661 Score: 143
Period size: 34 Copynumber: 4.6 Consensus size: 33
36153495 TTTTGCTATT
* *
36153505 GTATTGATTTGATATAAACATATTAATTGCTACC
1 GTATTGA-TTGTTATAAGCATATTAATTGCTACC
* * **
36153539 GCATTGATTTGTTATAAGCATATTATTTGCTATT
1 GTATTGA-TTGTTATAAGCATATTAATTGCTACC
* *
36153573 GTATTGATCTATTATAAGCATATTATTTGCTACC
1 GTATTGAT-TGTTATAAGCATATTAATTGCTACC
** * *
36153607 GTATCAAGTTGTTATAAGCAAATTAATTACTACC
1 GTATTGA-TTGTTATAAGCATATTAATTGCTACC
* *
36153641 ATATTGATCTATTATAAGCAT
1 GTATTGAT-TGTTATAAGCAT
36153662 GTCATATTGC
Statistics
Matches: 99, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
33 2 0.02
34 96 0.97
35 1 0.01
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.43
Consensus pattern (33 bp):
GTATTGATTGTTATAAGCATATTAATTGCTACC
Found at i:36154547 original size:12 final size:12
Alignment explanation
Indices: 36154530--36154560 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
36154520 GCCACCCATG
36154530 AAAGATGCTTCA
1 AAAGATGCTTCA
36154542 AAAGATGCTTCA
1 AAAGATGCTTCA
36154554 AAAGATG
1 AAAGATG
36154561 AAAACTCTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.45, C:0.13, G:0.19, T:0.23
Consensus pattern (12 bp):
AAAGATGCTTCA
Found at i:36157639 original size:16 final size:16
Alignment explanation
Indices: 36157618--36157657 Score: 80
Period size: 16 Copynumber: 2.5 Consensus size: 16
36157608 TCATGAAATT
36157618 ATTTATTTTCAATTTG
1 ATTTATTTTCAATTTG
36157634 ATTTATTTTCAATTTG
1 ATTTATTTTCAATTTG
36157650 ATTTATTT
1 ATTTATTT
36157658 CTAACATTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.25, C:0.05, G:0.05, T:0.65
Consensus pattern (16 bp):
ATTTATTTTCAATTTG
Found at i:36161619 original size:37 final size:37
Alignment explanation
Indices: 36161569--36161647 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
36161559 TTATTACGAA
* * *
36161569 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
36161606 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
36161643 GTCTT
1 GTCTT
36161648 TAGAGCTCGA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:36161843 original size:47 final size:47
Alignment explanation
Indices: 36161765--36162199 Score: 654
Period size: 47 Copynumber: 9.2 Consensus size: 47
36161755 CCCTTCGGGA
* * * * * **
36161765 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
36161812 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
** *
36161859 CTTATCACGCATATACACTTTCACATTCATCACATTGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
36161906 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* * *
36161955 CTTATCGCACATATACACTTTCACATTCATCACATCGACCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
36162002 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
36162049 CTTATCACATATATACACTTTCACATTCATCACATCGGGCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
36162096 CCTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
36162144 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
36162191 CTTATCACA
1 CTTATCACA
36162200 ATTTAGAATT
Statistics
Matches: 351, Mismatches: 34, Indels: 6
0.90 0.09 0.02
Matches are distributed among these distances:
47 266 0.76
48 44 0.13
49 41 0.12
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
Found at i:36161981 original size:143 final size:142
Alignment explanation
Indices: 36161765--36162199 Score: 680
Period size: 143 Copynumber: 3.1 Consensus size: 142
36161755 CCCTTCGGGA
* * * * * *
36161765 CTTATCACAT-T-TATGCACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGG-CATTAGGCCCTATCACATATATAC
**
36161828 ACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCACA
65 ACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATACACTTTCACATTCATCACA
*
36161893 TTGGCCATTAAGC
130 TCGGCCATTAAGC
* * *
36161906 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCGCACATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGC-ATTAGGCCCTATCACATATATAC
*
36161971 ACTTTCACATTCATCACATCGACCATTAAGCCTTATCACATATATACACTTTCACATTCATCACA
65 ACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATACACTTTCACATTCATCACA
36162036 TCGGCCATTAAGC
130 TCGGCCATTAAGC
36162049 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGGCATTAGGCCCTATTCACATATATA
1 CTTATCACATATATATACACTTTCACATTCATCACATC-GGCATTAGGCCCTA-TCACATATATA
36162112 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATACACTTTCACATTCATCAC
64 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATACACTTTCACATTCATCAC
*
36162177 ATCGGCCATTAGGC
129 ATCGGCCATTAAGC
36162191 CTTATCACA
1 CTTATCACA
36162200 ATTTAGAATT
Statistics
Matches: 270, Mismatches: 18, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
141 48 0.18
142 99 0.37
143 123 0.46
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (142 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCATTAGGCCCTATCACATATATACA
CTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATACACTTTCACATTCATCACAT
CGGCCATTAAGC
Found at i:36174046 original size:3 final size:3
Alignment explanation
Indices: 36174038--36174077 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
36174028 ACCACATGAA
36174038 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
36174078 CAAGTCATAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:36180136 original size:54 final size:54
Alignment explanation
Indices: 36180077--36180185 Score: 191
Period size: 54 Copynumber: 2.0 Consensus size: 54
36180067 TAGGCATACA
*
36180077 TAATACCAAAACTTGCTCTTATTTAGCTATCATAAGCTAATCATTACCAAGTAT
1 TAATACCAAAACTTGCTCTTATTTAGCTATCATAAGCTAACCATTACCAAGTAT
* *
36180131 TAATACCAAAACTTGTTCTTATTTAGCTATCTTAAGCTAACCATTACCAAGTAT
1 TAATACCAAAACTTGCTCTTATTTAGCTATCATAAGCTAACCATTACCAAGTAT
36180185 T
1 T
36180186 CACATGCCAT
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.36, C:0.20, G:0.07, T:0.37
Consensus pattern (54 bp):
TAATACCAAAACTTGCTCTTATTTAGCTATCATAAGCTAACCATTACCAAGTAT
Found at i:36180695 original size:55 final size:53
Alignment explanation
Indices: 36180571--36180762 Score: 143
Period size: 55 Copynumber: 3.6 Consensus size: 53
36180561 ACCATTGTCG
* * *
36180571 TGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAACTCACCATTGCCA
1 TGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAATGCCA
** * ** * *
36180624 TACCTT-AGCATGGTCTTACATGGGATCTTTGCCTTATAGTAGTTTATCAATGCCA
1 TGTCTTGA-CATGGTCTTACATGGGATCCTTGCCTTAT-G-AACTCACCAATGCCA
* *** * * * *
36180679 TGTCTTGACATGGTCTTCCATGATTTACTTGCCTTGTAAAACTTACCAATGCCA
1 TGTCTTGACATGGTCTTACATGGGATCCTTGCCTTAT-GAACTCACCAATGCCA
* * * *
36180733 TGCCTTGGCATGGTCTTACTTGGTATCCTT
1 TGTCTTGACATGGTCTTACATGGGATCCTT
36180763 AAACCCTAAT
Statistics
Matches: 105, Mismatches: 30, Indels: 7
0.74 0.21 0.05
Matches are distributed among these distances:
52 1 0.01
53 30 0.29
54 36 0.34
55 37 0.35
56 1 0.01
ACGTcount: A:0.20, C:0.23, G:0.18, T:0.38
Consensus pattern (53 bp):
TGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAATGCCA
Found at i:36188218 original size:23 final size:23
Alignment explanation
Indices: 36188190--36188248 Score: 109
Period size: 23 Copynumber: 2.6 Consensus size: 23
36188180 CACATTTACC
*
36188190 ACTATTAGCAGCTTTGCTGCGTT
1 ACTATTAGCAGCTTTGATGCGTT
36188213 ACTATTAGCAGCTTTGATGCGTT
1 ACTATTAGCAGCTTTGATGCGTT
36188236 ACTATTAGCAGCT
1 ACTATTAGCAGCT
36188249 ACCCTACGAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.37
Consensus pattern (23 bp):
ACTATTAGCAGCTTTGATGCGTT
Found at i:36193786 original size:29 final size:29
Alignment explanation
Indices: 36193728--36193884 Score: 203
Period size: 29 Copynumber: 5.5 Consensus size: 29
36193718 ATAGTAAGTC
*
36193728 CGCACACTTAGTG-TTATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
36193756 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
*
36193785 CGCACACTTAGTGCTTACAAAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
* *
36193814 CGCACACTTAGT-CCTATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
* * * * *
36193842 TGCACACTTAGTGCTATGCA-ATTTAAACC
1 CGCACACTTAGTGCT-TACATAATCAAACT
36193871 CGCACACTTAGTGC
1 CGCACACTTAGTGC
36193885 CAATCTCATG
Statistics
Matches: 113, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
28 37 0.33
29 74 0.65
30 2 0.02
ACGTcount: A:0.34, C:0.27, G:0.11, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCAAACT
Found at i:36193835 original size:57 final size:58
Alignment explanation
Indices: 36193728--36193885 Score: 205
Period size: 57 Copynumber: 2.8 Consensus size: 58
36193718 ATAGTAAGTC
* * *
36193728 CGCACACTTAGTG-TTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACAAAATCAAACTCGCACACTTAGTGCCTACATAATCAAACT
*
36193785 CGCACACTTAGTGCTTACAAAATCAAACTCGCACACTTAGT-CCTATATAATCAAACT
1 CGCACACTTAGTGCTTACAAAATCAAACTCGCACACTTAGTGCCTACATAATCAAACT
* * * * *
36193842 TGCACACTTAGTGCTATGC-AATTTAAACCCGCACACTTAGTGCC
1 CGCACACTTAGTGCT-TACAAAATCAAACTCGCACACTTAGTGCC
36193886 AATCTCATGA
Statistics
Matches: 89, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
57 60 0.67
58 29 0.33
ACGTcount: A:0.34, C:0.27, G:0.11, T:0.28
Consensus pattern (58 bp):
CGCACACTTAGTGCTTACAAAATCAAACTCGCACACTTAGTGCCTACATAATCAAACT
Found at i:36201171 original size:22 final size:22
Alignment explanation
Indices: 36201143--36201189 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
36201133 GTTTTGTTTC
*
36201143 ATTATTAAATATTGTTATTATT
1 ATTATTAAATATTGTCATTATT
36201165 ATTATTAAATATTGTCATTATT
1 ATTATTAAATATTGTCATTATT
36201187 ATT
1 ATT
36201190 CTAATATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.57
Consensus pattern (22 bp):
ATTATTAAATATTGTCATTATT
Found at i:36201414 original size:12 final size:14
Alignment explanation
Indices: 36201396--36201433 Score: 53
Period size: 12 Copynumber: 2.8 Consensus size: 14
36201386 ATCATCGTTT
36201396 CTATTATTATTTCA
1 CTATTATTATTTCA
36201410 -T-TTATTATTTTCA
1 CTATTATTA-TTTCA
36201423 CTATTATTATT
1 CTATTATTATT
36201434 ATTTTATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 6
0.78 0.00 0.22
Matches are distributed among these distances:
12 6 0.29
13 6 0.29
14 3 0.14
15 6 0.29
ACGTcount: A:0.26, C:0.11, G:0.00, T:0.63
Consensus pattern (14 bp):
CTATTATTATTTCA
Found at i:36201417 original size:15 final size:17
Alignment explanation
Indices: 36201397--36201437 Score: 54
Period size: 15 Copynumber: 2.6 Consensus size: 17
36201387 TCATCGTTTC
36201397 TATTATTATTTCA-T-T
1 TATTATTATTTCACTAT
36201412 TATTA-T-TTTCACTAT
1 TATTATTATTTCACTAT
36201427 TATTATTATTT
1 TATTATTATTT
36201438 TATTATACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
13 5 0.23
14 2 0.09
15 11 0.50
16 1 0.05
17 3 0.14
ACGTcount: A:0.27, C:0.07, G:0.00, T:0.66
Consensus pattern (17 bp):
TATTATTATTTCACTAT
Found at i:36202123 original size:21 final size:21
Alignment explanation
Indices: 36202090--36202136 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 21
36202080 ATATATATTG
36202090 TATATGTTCATTTATACTATGTA
1 TATATGTTCA-TT-TACTATGTA
*
36202113 TATATG-T-ATTTAGTATGTA
1 TATATGTTCATTTACTATGTA
36202132 TATAT
1 TATAT
36202137 TTAGTATTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 13 0.57
20 2 0.09
21 1 0.04
22 1 0.04
23 6 0.26
ACGTcount: A:0.32, C:0.04, G:0.11, T:0.53
Consensus pattern (21 bp):
TATATGTTCATTTACTATGTA
Found at i:36202128 original size:15 final size:15
Alignment explanation
Indices: 36202110--36202143 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
36202100 TTTATACTAT
*
36202110 GTATATATGTATTTA
1 GTATATATATATTTA
*
36202125 GTATGTATATATTTA
1 GTATATATATATTTA
36202140 GTAT
1 GTAT
36202144 TATTACACAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.15, T:0.53
Consensus pattern (15 bp):
GTATATATATATTTA
Found at i:36203794 original size:13 final size:13
Alignment explanation
Indices: 36203778--36203803 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
36203768 TCTTCATGTG
36203778 AGTTCAATTCTTA
1 AGTTCAATTCTTA
36203791 AGTTCAATTCTTA
1 AGTTCAATTCTTA
36203804 CCCGTTTCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.08, T:0.46
Consensus pattern (13 bp):
AGTTCAATTCTTA
Found at i:36204639 original size:21 final size:21
Alignment explanation
Indices: 36204611--36204692 Score: 84
Period size: 21 Copynumber: 4.0 Consensus size: 21
36204601 TGGATGAACC
36204611 AGCTCTTACGAGCTTCTGTTCG
1 AGCTCTTACGAGCTTCTGTT-G
* *
36204633 A-CTCTTATGAGCTTCT-TTC
1 AGCTCTTACGAGCTTCTGTTG
*
36204652 AGCT-TATACGAGCTTCTGTTT
1 AGCTCT-TACGAGCTTCTGTTG
36204673 AGC-CTT-CGAGCTTCTGTTG
1 AGCTCTTACGAGCTTCTGTTG
36204692 A
1 A
36204693 CTTATTCGGG
Statistics
Matches: 51, Mismatches: 5, Indels: 11
0.76 0.07 0.16
Matches are distributed among these distances:
19 15 0.29
20 15 0.29
21 20 0.39
22 1 0.02
ACGTcount: A:0.16, C:0.24, G:0.20, T:0.40
Consensus pattern (21 bp):
AGCTCTTACGAGCTTCTGTTG
Found at i:36205236 original size:4 final size:4
Alignment explanation
Indices: 36205227--36205445 Score: 429
Period size: 4 Copynumber: 54.8 Consensus size: 4
36205217 ATAAGTGATA
*
36205227 TATG TATG TATA TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
36205275 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
36205323 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
36205371 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
36205419 TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TAT
36205446 TTGAATTATA
Statistics
Matches: 213, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
4 213 1.00
ACGTcount: A:0.26, C:0.00, G:0.24, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:36206630 original size:15 final size:16
Alignment explanation
Indices: 36206610--36206639 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
36206600 AAAGACCACA
36206610 TTTCAA-TTTATTTGT
1 TTTCAATTTTATTTGT
36206625 TTTCAATTTTATTTG
1 TTTCAATTTTATTTG
36206640 CTTGATGTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.20, C:0.07, G:0.07, T:0.67
Consensus pattern (16 bp):
TTTCAATTTTATTTGT
Found at i:36208613 original size:43 final size:43
Alignment explanation
Indices: 36208474--36208687 Score: 153
Period size: 43 Copynumber: 5.0 Consensus size: 43
36208464 AGGAAAAAGT
* * * *
36208474 CACTATAGAACATGAACTTTAGCAGC-ATTTCTCATAAAAACGC
1 CACTATAGAACATGAACTTTAGCGGCGCTTTCTC-CACAAACGC
* ** ** * * * *
36208517 CACTATAAAACATGATTTTTAGCGATGTTTTCCCCATAAATGC
1 CACTATAGAACATGAACTTTAGCGGCGCTTTCTCCACAAACGC
* * * *
36208560 CGCTAAAGAACATGACCTTTAGCGGCGCTTTCTCTACAAACGC
1 CACTATAGAACATGAACTTTAGCGGCGCTTTCTCCACAAACGC
** * * * *
36208603 CGTTATAGAACATAAACTCTAGCGGCGCTTTTTCCACAAATGC
1 CACTATAGAACATGAACTTTAGCGGCGCTTTCTCCACAAACGC
* * * * *
36208646 TACTAAAGAACATGATCTTTACCAGCGCTTT-TCCACAAACGC
1 CACTATAGAACATGAACTTTAGCGGCGCTTTCTCCACAAACGC
36208688 TGTGACAGCC
Statistics
Matches: 129, Mismatches: 41, Indels: 3
0.75 0.24 0.02
Matches are distributed among these distances:
42 10 0.08
43 114 0.88
44 5 0.04
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.28
Consensus pattern (43 bp):
CACTATAGAACATGAACTTTAGCGGCGCTTTCTCCACAAACGC
Found at i:36210810 original size:40 final size:40
Alignment explanation
Indices: 36210755--36210976 Score: 322
Period size: 40 Copynumber: 5.6 Consensus size: 40
36210745 TATTCGAACG
* *
36210755 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
*
36210795 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
36210835 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* * *
36210875 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* * * *
36210915 ATATCCGGGCTAAGACCCGAAGGCATTTGCGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGATT
*
36210955 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
36210977 TACTTGGGTT
Statistics
Matches: 167, Mismatches: 14, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
39 14 0.08
40 151 0.90
41 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
Found at i:36219391 original size:39 final size:40
Alignment explanation
Indices: 36219212--36219432 Score: 313
Period size: 40 Copynumber: 5.6 Consensus size: 40
36219202 GTATTCGAAG
* * *
36219212 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
36219252 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
*
36219292 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
* *
36219332 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
* * * *
36219372 ATAT-CGGGCTAAGACCCGAAGGCATTTGCGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGATT
*
36219411 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
36219433 TACTTGGGTT
Statistics
Matches: 166, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 45 0.27
40 121 0.73
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
Found at i:36221355 original size:66 final size:65
Alignment explanation
Indices: 36221219--36221343 Score: 162
Period size: 66 Copynumber: 1.9 Consensus size: 65
36221209 TCATATTCTG
* * * *
36221219 AAGTTGTAGTTGGAGTTCGTCATATTTTCTACTTGCCTCTGCTTCCCTCGCTGCTGCCTCCACTT
1 AAGTTGTAGCTGGAGTTCGTCATATTTTCTA-TTGCCTCTACTTCCCTCGATGCTGCATCCACTT
36221284 T
65 T
* *
36221285 AAGTTGTAGCTGGAGTTCTTCATATTTTCT-TTGAGCCTCTACTTCTCTCGATGCTGCAT
1 AAGTTGTAGCTGGAGTTCGTCATATTTTCTATT--GCCTCTACTTCCCTCGATGCTGCAT
36221344 TCGTTTTAAG
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
64 2 0.04
66 49 0.96
ACGTcount: A:0.14, C:0.26, G:0.18, T:0.42
Consensus pattern (65 bp):
AAGTTGTAGCTGGAGTTCGTCATATTTTCTATTGCCTCTACTTCCCTCGATGCTGCATCCACTTT
Found at i:36224670 original size:35 final size:35
Alignment explanation
Indices: 36224631--36224697 Score: 125
Period size: 35 Copynumber: 1.9 Consensus size: 35
36224621 TTTTTTTATT
36224631 CTTTAAATGTTTATGTAAATTATGATAATCATAAA
1 CTTTAAATGTTTATGTAAATTATGATAATCATAAA
*
36224666 CTTTAAATGTTTATGTAAATTATGATTATCAT
1 CTTTAAATGTTTATGTAAATTATGATAATCAT
36224698 CTTTAAATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.39, C:0.06, G:0.09, T:0.46
Consensus pattern (35 bp):
CTTTAAATGTTTATGTAAATTATGATAATCATAAA
Found at i:36224716 original size:13 final size:13
Alignment explanation
Indices: 36224698--36224724 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
36224688 TGATTATCAT
36224698 CTTTAAATTTTAA
1 CTTTAAATTTTAA
36224711 CTTTAAATTTTAA
1 CTTTAAATTTTAA
36224724 C
1 C
36224725 CCTTTAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.52
Consensus pattern (13 bp):
CTTTAAATTTTAA
Found at i:36225297 original size:19 final size:19
Alignment explanation
Indices: 36225252--36225299 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
36225242 TAAATTTTAA
* **
36225252 AATAAAAATAAAAATTTAG
1 AATAAAAATTAAAATAAAG
* *
36225271 AATCAAAATTAAAATAAAT
1 AATAAAAATTAAAATAAAG
36225290 AATAAAAATT
1 AATAAAAATT
36225300 GGATTAAATA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (19 bp):
AATAAAAATTAAAATAAAG
Found at i:36229870 original size:34 final size:34
Alignment explanation
Indices: 36229830--36229940 Score: 127
Period size: 34 Copynumber: 3.3 Consensus size: 34
36229820 GAAGTACATA
* *
36229830 AATATATATGTATGGCTTGGCT-TAATCGAAGGTG
1 AATATATATGTATAGCTTGG-TATAATCGAAAGTG
*
36229864 ATTATATATGTATAGCTTGGTATAATCGAAAGTG
1 AATATATATGTATAGCTTGGTATAATCGAAAGTG
* ** *
36229898 AATATATATGTATAGTTTAATATAA-CCAAAGGTG
1 AATATATATGTATAGCTTGGTATAATCGAAA-GTG
36229932 AATATATAT
1 AATATATAT
36229941 ATACATTTAT
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
33 5 0.07
34 62 0.93
ACGTcount: A:0.38, C:0.06, G:0.19, T:0.37
Consensus pattern (34 bp):
AATATATATGTATAGCTTGGTATAATCGAAAGTG
Found at i:36230144 original size:59 final size:61
Alignment explanation
Indices: 36230013--36230150 Score: 151
Period size: 59 Copynumber: 2.3 Consensus size: 61
36230003 TAAACTTGAG
* *
36230013 ATGAGCACTAAGTGTGCGAAATGAAATTGGTACTGAGTACTAAGTGTACGAAATTAGTCAT
1 ATGAGCACTAAGTGTGCGAAATGAAATTGATACTGAGTACTAAGTGTACGAAATCAGTCAT
* * * * * *
36230074 TTG-GCATTAAGTGTGC-AAATTG-AATTTATA-TCGAGTACTAAGTGTACGAGATCGGTTA-
1 ATGAGCACTAAGTGTGCGAAA-TGAAATTGATACT-GAGTACTAAGTGTACGAAATCAGTCAT
36230132 ATGAGCACTAAGTGTGCGA
1 ATGAGCACTAAGTGTGCGA
36230151 GTTTATCTTT
Statistics
Matches: 63, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
58 3 0.05
59 43 0.68
60 15 0.24
61 2 0.03
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (61 bp):
ATGAGCACTAAGTGTGCGAAATGAAATTGATACTGAGTACTAAGTGTACGAAATCAGTCAT
Found at i:36235282 original size:31 final size:31
Alignment explanation
Indices: 36235213--36235275 Score: 101
Period size: 31 Copynumber: 2.0 Consensus size: 31
36235203 AAGCACAATT
36235213 TAATTTGCATCTCATATCCATATCTTGTTTA
1 TAATTTGCATCTCATATCCATATCTTGTTTA
*
36235244 TAATTTGCATCTTATATCCATAT-TATGTTTA
1 TAATTTGCATCTCATATCCATATCT-TGTTTA
36235275 T
1 T
36235276 CTTTTGCCAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 1 0.03
31 29 0.97
ACGTcount: A:0.27, C:0.16, G:0.06, T:0.51
Consensus pattern (31 bp):
TAATTTGCATCTCATATCCATATCTTGTTTA
Found at i:36239905 original size:19 final size:20
Alignment explanation
Indices: 36239861--36239910 Score: 61
Period size: 19 Copynumber: 2.5 Consensus size: 20
36239851 ACCATGTTTA
36239861 TATTTTTAACATATTTTAAT
1 TATTTTTAACATATTTTAAT
36239881 TA-TTTTATA-ATA-TTTAAT
1 TATTTTTA-ACATATTTTAAT
36239899 TATTTTTCAACA
1 TATTTTT-AACA
36239911 AGAATTTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
18 8 0.31
19 13 0.50
20 5 0.19
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (20 bp):
TATTTTTAACATATTTTAAT
Found at i:36241137 original size:47 final size:48
Alignment explanation
Indices: 36241068--36241287 Score: 215
Period size: 47 Copynumber: 4.7 Consensus size: 48
36241058 AATGTACCGG
* *
36241068 TGCCATATCCCAGACATGGTCTTACACTGGCTCATATCTC-AAGTCGA
1 TGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCGAAGCCGA
* * *
36241115 TGCCATGTCCTAGACATGGTCTTACACTGACT-ATCATTTCGTAA-CCGA
1 TGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-ATCTCG-AAGCCGA
* * ** *
36241163 TG-CATGTCCCAGACAT-GTTTTACACTGGCTTACGTCTCGAGGCCGA
1 TGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCGAAGCCGA
* * *
36241209 TG-CATGTCCCAGACAT-GTCTTACACTAGCACTCGT-T-TCGATGCCGA
1 TGCCATGTCCCAGACATGGTCTTACACT-G-GCTCATATCTCGAAGCCGA
*
36241255 TGCCATGTCCCAGTCATGGTCTTACACTGGCTC
1 TGCCATGTCCCAGACATGGTCTTACACTGGCTC
36241288 TTATAATGTG
Statistics
Matches: 144, Mismatches: 20, Indels: 19
0.79 0.11 0.10
Matches are distributed among these distances:
45 1 0.01
46 61 0.42
47 63 0.44
48 17 0.12
49 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.29
Consensus pattern (48 bp):
TGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCGAAGCCGA
Found at i:36241209 original size:46 final size:45
Alignment explanation
Indices: 36241075--36241328 Score: 183
Period size: 46 Copynumber: 5.4 Consensus size: 45
36241065 CGGTGCCATA
* * *
36241075 TCCCAGACATGGTCTTACACTGGC-TCATATCTC-AAGTCGATGCCATG
1 TCCCAGACAT-GTCTTACACTGGCTTC--GTCTCGAGGCCGATG-CATG
* * * * *
36241122 TCCTAGACATGGTCTTACACTGACTATCATTTCGTA-ACCGATGCATG
1 TCCCAGACAT-GTCTTACACTGGCT-TCGTCTCG-AGGCCGATGCATG
*
36241169 TCCCAGACATGTTTTACACTGGCTTACGTCTCGAGGCCGATGCATG
1 TCCCAGACATGTCTTACACTGGCTT-CGTCTCGAGGCCGATGCATG
* * * *
36241215 TCCCAGACATGTCTTACACTAGCACTCGTTTCGATGCCGATGCCATG
1 TCCCAGACATGTCTTACACTGGC-TTCGTCTCGAGGCCGATG-CATG
* * * * *
36241262 TCCCAGTCATGGTCTTACACTGGC-TCTTATAATGTGGCCGATGCATG
1 TCCCAGACAT-GTCTTACACTGGCTTCGTCT--CGAGGCCGATGCATG
* *
36241309 TGCCAAACATGTCTTACACT
1 TCCCAGACATGTCTTACACT
36241329 AGCCTACAAT
Statistics
Matches: 170, Mismatches: 26, Indels: 23
0.78 0.12 0.11
Matches are distributed among these distances:
45 2 0.01
46 76 0.45
47 64 0.38
48 25 0.15
49 3 0.02
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (45 bp):
TCCCAGACATGTCTTACACTGGCTTCGTCTCGAGGCCGATGCATG
Found at i:36241303 original size:94 final size:94
Alignment explanation
Indices: 36241063--36241331 Score: 275
Period size: 94 Copynumber: 2.9 Consensus size: 94
36241053 GGGGTAATGT
* * * * * * *
36241063 ACCGGTGCCATATCCCAGACATGGTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTCCTAG
1 ACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTATCTGAGGCCGATG-CATGTCCCAG
36241128 ACATGGTCTTACACT-G-ACTATCATTTCGTA
65 ACAT-GTCTTACACTAGCAC-ATCATTTCGTA
*
36241158 ACCGATG-CATGTCCCAGACAT-GTTTTACACTGG--CTTACGTCTCGAGGCCGATGCATGTCCC
1 ACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTA--TCT-GAGGCCGATGCATGTCCC
*
36241219 AGACATGTCTTACACTAGCAC-TCGTTTCG-A
63 AGACATGTCTTACACTAGCACATCATTTCGTA
* * * * *
36241249 TGCCGATGCCATGTCCCAGTCATGGTCTTACACTGGCTCTTATAATGTGGCCGATGCATGTGCCA
1 -ACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTAT-CTGAGGCCGATGCATGTCCCA
*
36241314 AACATGTCTTACACTAGC
64 GACATGTCTTACACTAGC
36241332 CTACAATAAC
Statistics
Matches: 147, Mismatches: 16, Indels: 23
0.79 0.09 0.12
Matches are distributed among these distances:
91 4 0.03
92 23 0.16
93 41 0.28
94 68 0.46
95 7 0.05
96 4 0.03
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.29
Consensus pattern (94 bp):
ACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTATCTGAGGCCGATGCATGTCCCAGA
CATGTCTTACACTAGCACATCATTTCGTA
Found at i:36242336 original size:17 final size:17
Alignment explanation
Indices: 36242316--36242348 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
36242306 ACACACGACC
36242316 GTGTCACACACAGCTGT
1 GTGTCACACACAGCTGT
*
36242333 GTGTCACACACGGCTG
1 GTGTCACACACAGCTG
36242349 AGACACACAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.30, G:0.27, T:0.21
Consensus pattern (17 bp):
GTGTCACACACAGCTGT
Found at i:36247210 original size:23 final size:24
Alignment explanation
Indices: 36247183--36247232 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
36247173 AGCTTATCGA
* *
36247183 ATTTCTTCCCCT-GTTAAACTTTG
1 ATTTCTTCCCCTACTTAAACTCTG
*
36247206 ATTTCTTTCCCTACTTAAACTCTG
1 ATTTCTTCCCCTACTTAAACTCTG
36247230 ATT
1 ATT
36247233 ATTTTAGGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 11 0.48
24 12 0.52
ACGTcount: A:0.20, C:0.26, G:0.06, T:0.48
Consensus pattern (24 bp):
ATTTCTTCCCCTACTTAAACTCTG
Found at i:36250710 original size:15 final size:16
Alignment explanation
Indices: 36250680--36250713 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
36250670 TTTTTTAAAA
*
36250680 AATAATTTATTGAATT
1 AATAATTTATTCAATT
36250696 AATAA-TTATTCAATT
1 AATAATTTATTCAATT
36250711 AAT
1 AAT
36250714 TTCTCTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (16 bp):
AATAATTTATTCAATT
Found at i:36256215 original size:27 final size:27
Alignment explanation
Indices: 36256185--36256362 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
36256175 ATATTGAGTC
* * * *
36256185 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
36256212 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
36256239 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
36256267 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
36256294 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
36256321 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
36256348 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36256363 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:36256324 original size:82 final size:81
Alignment explanation
Indices: 36256206--36256361 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
36256196 TGCTATATAA
* *
36256206 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
36256271 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
36256288 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
36256352 CACTTAGTGC
65 CACTTAGTGC
36256362 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:36264159 original size:27 final size:27
Alignment explanation
Indices: 36264129--36264305 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
36264119 ATATTGAGTC
* *
36264129 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
36264156 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
36264183 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
36264211 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
36264238 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
36264265 C-CACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
36264291 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36264306 GTACAATTTA
Statistics
Matches: 127, Mismatches: 19, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
26 21 0.17
27 83 0.65
28 23 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:36264221 original size:55 final size:54
Alignment explanation
Indices: 36264129--36264305 Score: 205
Period size: 55 Copynumber: 3.3 Consensus size: 54
36264119 ATATTGAGTC
* * * * *
36264129 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
* ** * *
36264183 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCAACATAGTCAAAT
* **
36264238 CGCACACTTAGTGC-ATCATATTCATTTC-CACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
36264291 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36264306 GTACAATTTA
Statistics
Matches: 104, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
53 35 0.34
54 24 0.23
55 45 0.43
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:36270044 original size:46 final size:45
Alignment explanation
Indices: 36269959--36270174 Score: 188
Period size: 46 Copynumber: 4.7 Consensus size: 45
36269949 TATACCTATA
* * * *
36269959 CCGATGCCATATCTCAGACATGGTCTTACACTGAC-ACATCTCGTAG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTCATCTCGTAG
*
36270005 CCGATGCATGTCCTAGACATGTCTTACACTGGCTTACATCTCG-AGG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCTT-CATCTCGTA-G
* * * * *
36270051 CCGAAGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAATA-
1 CCGATGCATGTCCCAGACATGTCTTACACTGGC-TTCATCTC-GTAG
* * * *
36270097 CTGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAAT-GTGG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TCAT-CTCGTAG
36270145 CCGATGCATGTCCCAGACATGTCTTACACT
1 CCGATGCATGTCCCAGACATGTCTTACACT
36270175 ATCCCACACA
Statistics
Matches: 137, Mismatches: 22, Indels: 22
0.76 0.12 0.12
Matches are distributed among these distances:
44 12 0.09
45 12 0.09
46 63 0.46
47 28 0.20
48 21 0.15
49 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (45 bp):
CCGATGCATGTCCCAGACATGTCTTACACTGGCTTCATCTCGTAG
Found at i:36270125 original size:94 final size:92
Alignment explanation
Indices: 36270007--36270175 Score: 261
Period size: 94 Copynumber: 1.8 Consensus size: 92
36269997 TCTCGTAGCC
*
36270007 GATGCATGTCCTAGACATGTCTTACACTGGCT-TACAT-CTCGAGGCCGAAGCATGTCCCAGACA
1 GATGCATGTCCTAGACATGTCTTACACTGGCTCT-CATAAT-GAGGCCGAAGCATGTCCCAGACA
36270070 TGTCTTACACTAGCACTCGTCTCAATACT
64 TGTCTTACACTAGCACTCGTCTCAATACT
* *
36270099 GATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAGACA
1 GATG-CATGTCCTAGACAT-GTCTTACACTGGCTCTCATAATGAGGCCGAAGCATGTCCCAGACA
36270164 TGTCTTACACTA
64 TGTCTTACACTA
36270176 TCCCACACAA
Statistics
Matches: 70, Mismatches: 3, Indels: 6
0.89 0.04 0.08
Matches are distributed among these distances:
92 4 0.06
93 14 0.20
94 50 0.71
95 2 0.03
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (92 bp):
GATGCATGTCCTAGACATGTCTTACACTGGCTCTCATAATGAGGCCGAAGCATGTCCCAGACATG
TCTTACACTAGCACTCGTCTCAATACT
Found at i:36277718 original size:46 final size:45
Alignment explanation
Indices: 36277666--36277788 Score: 138
Period size: 46 Copynumber: 2.6 Consensus size: 45
36277656 CGTAGCCGGC
* *
36277666 GCATGTCCAAGACATGTCTTACACTGGCTTGCGTCTCGAGGCTGAA
1 GCATGTCCAAGACATGTCTTACACTGGCTT-CGTCTCAAGGCCGAA
* * * * *
36277712 GCATGTCCTAGACATGTCTTACACTAGCACTCGTCTCAATGCCGAT
1 GCATGTCCAAGACATGTCTTACACTGGC-TTCGTCTCAAGGCCGAA
*
36277758 GCCATGTCCCAGACATGGTCTTACACTGGCT
1 G-CATGTCCAAGACAT-GTCTTACACTGGCT
36277789 CTTATACTGT
Statistics
Matches: 64, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
46 38 0.59
47 14 0.22
48 12 0.19
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.27
Consensus pattern (45 bp):
GCATGTCCAAGACATGTCTTACACTGGCTTCGTCTCAAGGCCGAA
Found at i:36280720 original size:22 final size:22
Alignment explanation
Indices: 36280695--36280767 Score: 62
Period size: 19 Copynumber: 3.2 Consensus size: 22
36280685 ATAATATCTT
36280695 TAGTTAGCTCTATTATCTTGCA
1 TAGTTAGCTCTATTATCTTGCA
* *
36280717 TAGTTTTTAGGTTCATAATATCTT---
1 TAG---TTA-GCTC-TATTATCTTGCA
36280741 TAGTTAGCTCTATTATCTTGCA
1 TAGTTAGCTCTATTATCTTGCA
36280763 TAGTT
1 TAGTT
36280768 TTTACATAGT
Statistics
Matches: 39, Mismatches: 4, Indels: 16
0.66 0.07 0.27
Matches are distributed among these distances:
19 8 0.21
20 3 0.08
21 3 0.08
22 8 0.21
24 3 0.08
25 3 0.08
26 3 0.08
27 8 0.21
ACGTcount: A:0.23, C:0.14, G:0.14, T:0.49
Consensus pattern (22 bp):
TAGTTAGCTCTATTATCTTGCA
Found at i:36280746 original size:46 final size:46
Alignment explanation
Indices: 36280679--36280771 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
36280669 GACTAAGTTA
36280679 AGGTTCATAATATCTTTAGTTAGCTCTATTATCTTGCATAGTTTTT
1 AGGTTCATAATATCTTTAGTTAGCTCTATTATCTTGCATAGTTTTT
36280725 AGGTTCATAATATCTTTAGTTAGCTCTATTATCTTGCATAGTTTTT
1 AGGTTCATAATATCTTTAGTTAGCTCTATTATCTTGCATAGTTTTT
36280771 A
1 A
36280772 CATAGTTTTT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.25, C:0.13, G:0.13, T:0.49
Consensus pattern (46 bp):
AGGTTCATAATATCTTTAGTTAGCTCTATTATCTTGCATAGTTTTT
Found at i:36281520 original size:323 final size:325
Alignment explanation
Indices: 36280930--36281578 Score: 1212
Period size: 323 Copynumber: 2.0 Consensus size: 325
36280920 CAAACCCATA
* *
36280930 AGAGATCGAGTTGCCATGGAAGTAATTCTGAACATGTTAGCATGATGAAGGTAAATTGAATTAAT
1 AGAGATCGAGTTGCCATGGAAGTAATTCTGAACATGTTAGCATGATGAAGGAAAATTGAATAAAT
36280995 TAATATAATTATCCTAGCTCATTTAAAGTTGATTGTTTTTTTATTGCTAAAGCCCTCATTCATAC
66 TAATATAATTATCCTAGCTCATTTAAAGTTGATTGTTTTTTTATTGCTAAAGCCCTCATTCATAC
*
36281060 ATTTAGGTAAAATTACATTTAGATTAAGAATTGCATAGGGATCACTCTTGCATTTAATTAATCTA
131 ATTTAGGTAAAATTACATTTAGATTAAGAATTGCATAGGGACCACTCTTGCATTTAATTAATCTA
36281125 ATCATCACTATCTAAATTTATTGAGTTTTTTTACATCAAATTGTTAATTATAATTTTGCAATTAA
196 ATCATCACTATCTAAATTTATTGAGTTTTTTTACATCAAATTGTTAATTATAATTTTGCAATTAA
*
36281190 ATTGGTTAAGCTTTTACAGCCCCTATAGAGACGATAACTCATATTACTTACTTATTACTTGGATG
261 ATTGGTTAAGCTTTTACAGCCCCTATAGAGACGATAACTCATATTACTTACTTATAACTTGGATG
36281255 AGAGATCGAGTTGCCATGGAAGTAATTCTGAACATGTTAGCATGATGAAGGAAAATTGAATAAAT
1 AGAGATCGAGTTGCCATGGAAGTAATTCTGAACATGTTAGCATGATGAAGGAAAATTGAATAAAT
36281320 TAATATAATTATCCTAGCTCATTTAAAGTTGA-T-TTTTTTTATTGCTAAAGCCCTCATTCATAC
66 TAATATAATTATCCTAGCTCATTTAAAGTTGATTGTTTTTTTATTGCTAAAGCCCTCATTCATAC
36281383 ATTTAGGTAAAATTACATTTAGATTAAGAATTGCATAGGGACCACTCTTGCATTTAATTAATCTA
131 ATTTAGGTAAAATTACATTTAGATTAAGAATTGCATAGGGACCACTCTTGCATTTAATTAATCTA
*
36281448 ATCATCACTATTTAAATTTATTGAGTTTTTTTACATCAAATTGTTAATTATAATTTTGCAATTAA
196 ATCATCACTATCTAAATTTATTGAGTTTTTTTACATCAAATTGTTAATTATAATTTTGCAATTAA
** *
36281513 ATTGGTTAAGCTTTTACAGCTTCTATGGAGACGATAACTCATATTACTTACTTATAACTTGGATG
261 ATTGGTTAAGCTTTTACAGCCCCTATAGAGACGATAACTCATATTACTTACTTATAACTTGGATG
36281578 A
1 A
36281579 CTACCTACAC
Statistics
Matches: 316, Mismatches: 8, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
323 220 0.70
324 1 0.00
325 95 0.30
ACGTcount: A:0.34, C:0.13, G:0.14, T:0.39
Consensus pattern (325 bp):
AGAGATCGAGTTGCCATGGAAGTAATTCTGAACATGTTAGCATGATGAAGGAAAATTGAATAAAT
TAATATAATTATCCTAGCTCATTTAAAGTTGATTGTTTTTTTATTGCTAAAGCCCTCATTCATAC
ATTTAGGTAAAATTACATTTAGATTAAGAATTGCATAGGGACCACTCTTGCATTTAATTAATCTA
ATCATCACTATCTAAATTTATTGAGTTTTTTTACATCAAATTGTTAATTATAATTTTGCAATTAA
ATTGGTTAAGCTTTTACAGCCCCTATAGAGACGATAACTCATATTACTTACTTATAACTTGGATG
Found at i:36287998 original size:40 final size:40
Alignment explanation
Indices: 36287943--36288126 Score: 244
Period size: 40 Copynumber: 4.5 Consensus size: 40
36287933 TATTCGGATG
*
36287943 ATATCCGGGCTAAGTCCCAAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
36287983 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTG-CA--AGTTACT
* * *
36288026 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
36288066 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
36288106 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
36288127 ATACTTGGGT
Statistics
Matches: 126, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
39 13 0.10
40 76 0.60
41 1 0.01
43 36 0.29
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:36288086 original size:83 final size:80
Alignment explanation
Indices: 36287947--36288126 Score: 263
Period size: 83 Copynumber: 2.2 Consensus size: 80
36287937 CGGATGATAT
* * *
36287947 CCGGGCTAAGTCCCAAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCA-TT-
36288012 TGTGAGTAGTTGCTATAC
64 TGTGAG-AGTTGCTATAC
*
36288030 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTG
* *
36288095 TGCGAGTTGCTATAT
66 TGAGAGTTGCTATAC
*
36288110 CC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAG
36288127 ATACTTGGGT
Statistics
Matches: 90, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
79 14 0.16
80 12 0.13
81 5 0.06
82 2 0.02
83 57 0.63
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTG
TGAGAGTTGCTATAC
Found at i:36291747 original size:42 final size:42
Alignment explanation
Indices: 36291688--36291770 Score: 130
Period size: 42 Copynumber: 2.0 Consensus size: 42
36291678 TCTTGGACTT
*
36291688 CATAAAAAACTTAACTTAGGCATTTCCGAGTTCCCTTAAATA
1 CATAAAAAACTTAACTTAGGCATTTCCGAGTTACCTTAAATA
** *
36291730 CATAAAAAACTTAACTTAGTTATTTCTGAGTTACCTTAAAT
1 CATAAAAAACTTAACTTAGGCATTTCCGAGTTACCTTAAAT
36291771 CCAAATATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.35
Consensus pattern (42 bp):
CATAAAAAACTTAACTTAGGCATTTCCGAGTTACCTTAAATA
Found at i:36295932 original size:38 final size:38
Alignment explanation
Indices: 36295881--36295953 Score: 119
Period size: 38 Copynumber: 1.9 Consensus size: 38
36295871 CTTATTCAAA
36295881 GCATCCAACTGTCATTTGAATTCTAAGCTAGAGAGTTT
1 GCATCCAACTGTCATTTGAATTCTAAGCTAGAGAGTTT
* * *
36295919 GCATCCGATTGTCATTTGAATTTTAAGCTAGAGAG
1 GCATCCAACTGTCATTTGAATTCTAAGCTAGAGAG
36295954 CGAAATAAAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (38 bp):
GCATCCAACTGTCATTTGAATTCTAAGCTAGAGAGTTT
Found at i:36298566 original size:37 final size:37
Alignment explanation
Indices: 36298516--36298589 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
36298506 AATGAAGAGT
36298516 GAGCTTAACTGAGATGGAAGAACAAGAGGAAGTAATG
1 GAGCTTAACTGAGATGGAAGAACAAGAGGAAGTAATG
36298553 GAGCTTAACTGAGATGGAAGAACAAGAGGAAGTAATG
1 GAGCTTAACTGAGATGGAAGAACAAGAGGAAGTAATG
36298590 TTAAACCATG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.43, C:0.08, G:0.32, T:0.16
Consensus pattern (37 bp):
GAGCTTAACTGAGATGGAAGAACAAGAGGAAGTAATG
Found at i:36307129 original size:16 final size:16
Alignment explanation
Indices: 36307108--36307147 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
36307098 TGTAATACCA
*
36307108 TAAAGATATTTTTAAT
1 TAAAGATACTTTTAAT
*
36307124 TAAAGAAGACTTTTAAT
1 TAAAG-ATACTTTTAAT
36307141 TAAAGAT
1 TAAAGAT
36307148 CTCCTAATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.47, C:0.03, G:0.10, T:0.40
Consensus pattern (16 bp):
TAAAGATACTTTTAAT
Found at i:36309425 original size:29 final size:29
Alignment explanation
Indices: 36309386--36309443 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
36309376 GGTAAAAAAC
* *
36309386 AAGATTGAGAAATTTAGTTCACGGGTAAG
1 AAGATTGAGAAATTTAGGTCACAGGTAAG
36309415 AAGATTGAGAAATTTAGGTCACAGGTAAG
1 AAGATTGAGAAATTTAGGTCACAGGTAAG
36309444 TTCACTAACA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.40, C:0.07, G:0.28, T:0.26
Consensus pattern (29 bp):
AAGATTGAGAAATTTAGGTCACAGGTAAG
Found at i:36310129 original size:16 final size:17
Alignment explanation
Indices: 36310108--36310141 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
36310098 GAAAAAAAAA
36310108 ACAAAAGAAT-AGACTG
1 ACAAAAGAATAAGACTG
36310124 ACAAAAGAATAAGACTG
1 ACAAAAGAATAAGACTG
36310141 A
1 A
36310142 TGAACATCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.59, C:0.12, G:0.18, T:0.12
Consensus pattern (17 bp):
ACAAAAGAATAAGACTG
Found at i:36316054 original size:18 final size:18
Alignment explanation
Indices: 36316031--36316067 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
36316021 TAATCATAAA
*
36316031 GGTTTCAAGTGTTTTCCT
1 GGTTTCAAGTGTCTTCCT
36316049 GGTTTCAAGTGTCTTCCT
1 GGTTTCAAGTGTCTTCCT
36316067 G
1 G
36316068 ACGATGGCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.11, C:0.19, G:0.24, T:0.46
Consensus pattern (18 bp):
GGTTTCAAGTGTCTTCCT
Found at i:36320771 original size:25 final size:25
Alignment explanation
Indices: 36320743--36320793 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
36320733 TAAGAGTATG
*
36320743 AAAATCAAATAATCATTAAAACATC
1 AAAATCAAACAATCATTAAAACATC
36320768 AAAATCAAACAATCATTAAAACATC
1 AAAATCAAACAATCATTAAAACATC
36320793 A
1 A
36320794 TGTTGATAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.61, C:0.18, G:0.00, T:0.22
Consensus pattern (25 bp):
AAAATCAAACAATCATTAAAACATC
Found at i:36324344 original size:40 final size:40
Alignment explanation
Indices: 36324163--36324384 Score: 227
Period size: 40 Copynumber: 5.6 Consensus size: 40
36324153 TCCTCGTTCA
* * * * *
36324163 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
36324202 AATGCCTTC-GGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
36324241 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
36324281 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
36324321 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
36324361 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
36324385 CAGCATTCAA
Statistics
Matches: 158, Mismatches: 20, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
38 24 0.15
39 21 0.13
40 105 0.66
41 8 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:36324393 original size:41 final size:41
Alignment explanation
Indices: 36324316--36324393 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
36324306 TTAGTATCTC
* * *
36324316 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
36324357 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
36324394 AGTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:36347607 original size:27 final size:27
Alignment explanation
Indices: 36347577--36347630 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
36347567 ATGACCAAAA
*
36347577 TACCCCTATAGGGTAAAATGACT-ATTT
1 TACCCCTAGAGGGT-AAATGACTGATTT
*
36347604 TACCCCTCGAGGGTAAATGACTGATTT
1 TACCCCTAGAGGGTAAATGACTGATTT
36347631 GTGCTATGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 8 0.33
27 16 0.67
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (27 bp):
TACCCCTAGAGGGTAAATGACTGATTT
Found at i:36347843 original size:26 final size:25
Alignment explanation
Indices: 36347767--36347843 Score: 66
Period size: 26 Copynumber: 3.0 Consensus size: 25
36347757 ACAAACACTG
* * *
36347767 ATACTAGCAGTTTTGCTGCATTACTG
1 ATACTGGCAGCTTTGCTGCATTA-TT
* * *
36347793 ATACTGGCAACTCTGCTACGA-TATT
1 ATACTGGCAGCTTTGCTGC-ATTATT
36347818 ATTACTGGCAGCTTTGCTGCATTATT
1 A-TACTGGCAGCTTTGCTGCATTATT
36347844 GATGTGTTGG
Statistics
Matches: 39, Mismatches: 9, Indels: 6
0.72 0.17 0.11
Matches are distributed among these distances:
25 3 0.08
26 35 0.90
27 1 0.03
ACGTcount: A:0.23, C:0.21, G:0.18, T:0.38
Consensus pattern (25 bp):
ATACTGGCAGCTTTGCTGCATTATT
Found at i:36349283 original size:40 final size:40
Alignment explanation
Indices: 36349246--36349427 Score: 192
Period size: 40 Copynumber: 4.6 Consensus size: 40
36349236 GCTACTCGTT
*
36349246 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* * *
36349286 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
36349326 CAAATGCCTTCGGG-CTTAGCCCGAAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
36349365 CAAATGCCTTC-GGATCTTTGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
36349406 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
36349428 AGACATCATT
Statistics
Matches: 116, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
38 2 0.02
39 31 0.27
40 70 0.60
41 13 0.11
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:36349348 original size:79 final size:81
Alignment explanation
Indices: 36349246--36349427 Score: 212
Period size: 79 Copynumber: 2.3 Consensus size: 81
36349236 GCTACTCGTT
* ** *
36349246 CAAATGCCTTCGGGACATAGCCCG-GTTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGAAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
*
36349309 GGATTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* ***
36349326 CAAATGCCTTCGGG-CTTAGCCCGAAATTAGTATCTCGCACAAATGCCTTCGGATCTTTGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
36349390 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
36349406 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
36349428 AGACATCATT
Statistics
Matches: 87, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
78 3 0.03
79 54 0.62
80 30 0.34
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGAAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:36357254 original size:79 final size:82
Alignment explanation
Indices: 36357152--36357336 Score: 211
Period size: 79 Copynumber: 2.3 Consensus size: 82
36357142 GCTACTCGTT
* ** *
36357152 CAAATGCCTTCGGGACATAGCCCGGTTA-TAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
*
36357215 GGATTTAGTAACTT-GCA
65 GGATATAGTAACTTAGCA
* * ***
36357232 CAAATGCCTTCGGG-TTTAGCCC-GAAATTAGTATCTCGCACAAATGCCTTCGGATCTTTGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
36357295 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
36357312 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
36357337 CATCATTCAA
Statistics
Matches: 87, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
78 5 0.06
79 52 0.60
80 28 0.32
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:36357336 original size:40 final size:41
Alignment explanation
Indices: 36357152--36357336 Score: 186
Period size: 40 Copynumber: 4.6 Consensus size: 41
36357142 GCTACTCGTT
* *
36357152 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAAC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTCGCA
* * *
36357192 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTT-GCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTCGCA
* * *
36357232 CAAATGCCTTCGGG-TTTAGCCC-GAAATTAGTATC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTTCGCA
* * * * *
36357271 CAAATGCCTTC-GGATCTTTGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAACTTCGCA
36357312 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
36357337 CATCATTCAA
Statistics
Matches: 116, Mismatches: 21, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
38 5 0.04
39 26 0.22
40 70 0.60
41 15 0.13
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTCGCA
Found at i:36371465 original size:40 final size:39
Alignment explanation
Indices: 36371395--36371613 Score: 244
Period size: 40 Copynumber: 5.5 Consensus size: 39
36371385 AAACCAAGTA
* * *
36371395 CCTTCGGGATTTAG-TCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGG-TATAG-TAACTCGCACAAATG
36371434 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGG-TATAGTAACTCGCACAAATG
* *
36371474 CCTTCGGGACTTAGCCGGGATATAGTAACTCGCACAAATT
1 CCTTCGGGACTTAGCCCGG-TATAGTAACTCGCACAAATG
* * * *
36371514 CCTTCGGGGCTTAGCCCGGAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCACAAATG
* * * * *
36371554 CCTTCGGGGCTTAGCTCGGAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCACAAATG
36371594 CCTTCGGGACTTAGCCCGGT
1 CCTTCGGGACTTAGCCCGGT
36371614 TATCATCCGA
Statistics
Matches: 160, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 15 0.09
40 145 0.91
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGTATAGTAACTCGCACAAATG
Found at i:36371549 original size:80 final size:79
Alignment explanation
Indices: 36371395--36371612 Score: 271
Period size: 80 Copynumber: 2.7 Consensus size: 79
36371385 AAACCAAGTA
* * * *
36371395 CCTTCGGGATTTAGTC-GGATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAG
1 CCTTCGGGACTTAGCCGGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
36371459 TAACTCGCACAAATG
65 TAACTAGCACAAATG
* *
36371474 CCTTCGGGACTTAGCCGGGATATAGTAACTCGCACAAATTCCTTCGGGGCTTAGCCCGGA-ATTA
1 CCTTCGGGACTTAGCCGGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TA
*
36371538 GTCACTAGCACAAATG
64 GTAACTAGCACAAATG
* * *
36371554 CCTTCGGGGCTTAGCTCGGAAT-TAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGC-CGGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
36371613 TTATCATCCG
Statistics
Matches: 121, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
79 16 0.13
80 100 0.83
81 5 0.04
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCGGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
AACTAGCACAAATG
Found at i:36373808 original size:43 final size:43
Alignment explanation
Indices: 36373735--36373850 Score: 107
Period size: 43 Copynumber: 2.7 Consensus size: 43
36373725 CAGAGAACAT
* * * *
36373735 ATACAATGCCAAC-GTCCCAGAC-GTGATCTTACATGTAATCA-
1 ATACGATGCCAACTGTCCCAGACAG-GGTCTTACACGAAATCAG
*
36373776 ATCATTGATGCC-ACTGTCCCAGACAGGGTCTTACACGAAATCAG
1 AT-A-CGATGCCAACTGTCCCAGACAGGGTCTTACACGAAATCAG
* *
36373820 ATACGATGCCGA-TGTCCCAGACATGGTCTTA
1 ATACGATGCCAACTGTCCCAGACAGGGTCTTA
36373851 TACATAAAAC
Statistics
Matches: 62, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
41 2 0.03
42 27 0.44
43 30 0.48
44 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (43 bp):
ATACGATGCCAACTGTCCCAGACAGGGTCTTACACGAAATCAG
Found at i:36379333 original size:77 final size:77
Alignment explanation
Indices: 36379243--36379399 Score: 305
Period size: 77 Copynumber: 2.0 Consensus size: 77
36379233 CTTTGACCAA
36379243 GACCATACAAAAGCCTATACATGCCATATAAACCGTATTTAACATTTCAAAAACTACAGAGATAA
1 GACCATACAAAAGCCTATACATGCCATATAAACCGTATTTAACATTTCAAAAACTACAGAGATAA
36379308 GCTGGATAGTGT
66 GCTGGATAGTGT
*
36379320 GACCATACAAAAGCCTATACATGCCATATAAACCGTATTTAACATTTCAAAAACTACCGAGATAA
1 GACCATACAAAAGCCTATACATGCCATATAAACCGTATTTAACATTTCAAAAACTACAGAGATAA
36379385 GCTGGATAGTGT
66 GCTGGATAGTGT
36379397 GAC
1 GAC
36379400 TTGGGTGCTA
Statistics
Matches: 79, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
77 79 1.00
ACGTcount: A:0.41, C:0.20, G:0.15, T:0.24
Consensus pattern (77 bp):
GACCATACAAAAGCCTATACATGCCATATAAACCGTATTTAACATTTCAAAAACTACAGAGATAA
GCTGGATAGTGT
Found at i:36379768 original size:21 final size:21
Alignment explanation
Indices: 36379742--36379805 Score: 110
Period size: 21 Copynumber: 3.0 Consensus size: 21
36379732 CGAATAAGTC
*
36379742 AACAGAAGCTCGTATGAGCTG
1 AACAGAAGCTCGTAAGAGCTG
*
36379763 AACAGAAGCTCATAAGAGCTG
1 AACAGAAGCTCGTAAGAGCTG
36379784 AACAGAAGCTCGTAAGAGCTG
1 AACAGAAGCTCGTAAGAGCTG
36379805 A
1 A
36379806 TCCGTTCAGT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.39, C:0.19, G:0.27, T:0.16
Consensus pattern (21 bp):
AACAGAAGCTCGTAAGAGCTG
Found at i:36383268 original size:42 final size:42
Alignment explanation
Indices: 36383167--36383304 Score: 145
Period size: 42 Copynumber: 3.2 Consensus size: 42
36383157 TGTGTTATCA
* * * *
36383167 TGTAAGACCACGTCTGGGACGTTGGCATCG-ACTTATGATTTACG
1 TGTAAGACCGCATTTGGGACATTGGCATCGTA-TT-TGATTT-CG
36383211 TGTAAGACCGCATTTGGGACATTGGCATCGTATTTGATTTCG
1 TGTAAGACCGCATTTGGGACATTGGCATCGTATTTGATTTCG
* * * *
36383253 TGTAAGACC-CTATTTGGGACAGTGGCATCGATATTTGAGTACA
1 TGTAAGACCGC-ATTTGGGACATTGGCATCG-TATTTGATTTCG
36383296 TGTAAGACC
1 TGTAAGACC
36383305 ATGTCTGGAC
Statistics
Matches: 83, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
41 1 0.01
42 29 0.35
43 24 0.29
44 28 0.34
45 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (42 bp):
TGTAAGACCGCATTTGGGACATTGGCATCGTATTTGATTTCG
Found at i:36383322 original size:43 final size:43
Alignment explanation
Indices: 36383165--36383323 Score: 132
Period size: 43 Copynumber: 3.7 Consensus size: 43
36383155 TATGTGTTAT
* *
36383165 CATGTAAGACCACGTCTGGGACGTTGGCATCGACT-TATGATTTA
1 CATGTAAGACCATGTCTGGGACGTTGGCATCGA-TATTTGA-TTA
* * *
36383209 CGTGTAAGACCGCAT-T-TGGGACATTGGCATCG-TATTTGATTT
1 CATGTAAGA-C-CATGTCTGGGACGTTGGCATCGATATTTGATTA
* * * * *
36383251 CGTGTAAGACCCTATTTGGGACAG-TGGCATCGATATTTGAGTA
1 CATGTAAGACCATGTCTGGGAC-GTTGGCATCGATATTTGATTA
36383294 CATGTAAGACCATGTCT-GGACCGTTGGCAT
1 CATGTAAGACCATGTCTGGGA-CGTTGGCAT
36383324 TGTACGAGCT
Statistics
Matches: 93, Mismatches: 13, Indels: 19
0.74 0.10 0.15
Matches are distributed among these distances:
40 2 0.02
41 2 0.02
42 30 0.32
43 32 0.34
44 23 0.25
45 2 0.02
46 2 0.02
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (43 bp):
CATGTAAGACCATGTCTGGGACGTTGGCATCGATATTTGATTA
Found at i:36390840 original size:44 final size:42
Alignment explanation
Indices: 36390771--36390927 Score: 140
Period size: 43 Copynumber: 3.7 Consensus size: 42
36390761 TGTGTTATCG
* * * * *
36390771 TGTAAGACCACGTCTAGAACGTTGGCATCGACTTATAATTTACA
1 TGTAAGACCACATCTGGGACATTGGCATCGA-TT-TGATTTACA
* *
36390815 TGTAAGACCACGTCTGGGACATTGGCATCGTATTTGATTT-CG
1 TGTAAGACCACATCTGGGACATTGGCATCG-ATTTGATTTACA
* *
36390857 TGTAAGACC-CTATCTGGGACAGTAGCATCGATATTTGA-TTACA
1 TGTAAGACCAC-ATCTGGGACATTGGCATCG--ATTTGATTTACA
* *
36390900 TGTAAGACCACATATGGGACGTTGGCAT
1 TGTAAGACCACATCTGGGACATTGGCAT
36390928 TGTACGAGCT
Statistics
Matches: 95, Mismatches: 13, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
41 1 0.01
42 28 0.29
43 35 0.37
44 30 0.32
45 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (42 bp):
TGTAAGACCACATCTGGGACATTGGCATCGATTTGATTTACA
Done.