Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 115 of 316
Found at i:36390873 original size:42 final size:43
Alignment explanation
Indices: 36390810--36390927 Score: 150
Period size: 43 Copynumber: 2.8 Consensus size: 43
36390800 GACTTATAAT
*
36390810 TTACATGTAAGACCACGTCTGGGACATTGGCATCG-TATTTGA
1 TTACATGTAAGACCACATCTGGGACATTGGCATCGATATTTGA
* * * *
36390852 TTTCGTGTAAGACC-CTATCTGGGACAGTAGCATCGATATTTGA
1 TTACATGTAAGACCAC-ATCTGGGACATTGGCATCGATATTTGA
* *
36390895 TTACATGTAAGACCACATATGGGACGTTGGCAT
1 TTACATGTAAGACCACATCTGGGACATTGGCAT
36390928 TGTACGAGCT
Statistics
Matches: 62, Mismatches: 11, Indels: 5
0.79 0.14 0.06
Matches are distributed among these distances:
41 1 0.02
42 28 0.45
43 32 0.52
44 1 0.02
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.31
Consensus pattern (43 bp):
TTACATGTAAGACCACATCTGGGACATTGGCATCGATATTTGA
Found at i:36390906 original size:43 final size:42
Alignment explanation
Indices: 36390810--36390919 Score: 141
Period size: 42 Copynumber: 2.6 Consensus size: 42
36390800 GACTTATAAT
* * *
36390810 TTACATGTAAGACCACGTCTGGGACATTGGCATCGTATTTGA
1 TTACATGTAAGACCACATCTGGGACAGTAGCATCGTATTTGA
* *
36390852 TTTCGTGTAAGACC-CTATCTGGGACAGTAGCATCGATATTTGA
1 TTACATGTAAGACCAC-ATCTGGGACAGTAGCATCG-TATTTGA
*
36390895 TTACATGTAAGACCACATATGGGAC
1 TTACATGTAAGACCACATCTGGGAC
36390920 GTTGGCATTG
Statistics
Matches: 57, Mismatches: 8, Indels: 5
0.81 0.11 0.07
Matches are distributed among these distances:
41 1 0.02
42 28 0.49
43 27 0.47
44 1 0.02
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (42 bp):
TTACATGTAAGACCACATCTGGGACAGTAGCATCGTATTTGA
Found at i:36397814 original size:19 final size:19
Alignment explanation
Indices: 36397792--36397828 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
36397782 ATTGGTCTCC
36397792 ATTAAAAATTTTAATATTA
1 ATTAAAAATTTTAATATTA
*
36397811 ATTAAAAATTTTAGTATT
1 ATTAAAAATTTTAATATT
36397829 TGTTATCACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (19 bp):
ATTAAAAATTTTAATATTA
Found at i:36399245 original size:30 final size:30
Alignment explanation
Indices: 36399211--36399273 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
36399201 ACTTAACAAG
36399211 CAAATGCC-TCTAAAATAATAACAAAATTAA
1 CAAATGCCTTC-AAAATAATAACAAAATTAA
*
36399241 CAAATGCCTTCAAAATAATAGCAAAATTAA
1 CAAATGCCTTCAAAATAATAACAAAATTAA
36399271 CAA
1 CAA
36399274 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.94
31 2 0.06
ACGTcount: A:0.56, C:0.17, G:0.05, T:0.22
Consensus pattern (30 bp):
CAAATGCCTTCAAAATAATAACAAAATTAA
Found at i:36399328 original size:22 final size:22
Alignment explanation
Indices: 36399303--36399345 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
36399293 TATCCAAACA
36399303 ATAACA-ATAAAATAGTAGCAAC
1 ATAACAGA-AAAATAGTAGCAAC
* *
36399325 ATAATAGAAAAATGGTAGCAA
1 ATAACAGAAAAATAGTAGCAA
36399346 AATAGGGAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 17 0.94
23 1 0.06
ACGTcount: A:0.58, C:0.09, G:0.14, T:0.19
Consensus pattern (22 bp):
ATAACAGAAAAATAGTAGCAAC
Found at i:36401831 original size:45 final size:45
Alignment explanation
Indices: 36401719--36401848 Score: 133
Period size: 45 Copynumber: 3.0 Consensus size: 45
36401709 AGATCAAATA
* * * * *
36401719 CGATGCCGATGTCCCAGACATGGTCTTACTCG-TAAC-CACATAT
1 CGATGCCAATGTCCCAGACGTGGTCTTACACGAAAACACATATAT
* * * *
36401762 CGA-CCCTAA-CTCCTAGATGTGGTCTTACACGAAAACACATATAT
1 CGATGCC-AATGTCCCAGACGTGGTCTTACACGAAAACACATATAT
*
36401806 CGATGCCAATGTCCCAGACGTGGTCTTACATGAAAACACATAT
1 CGATGCCAATGTCCCAGACGTGGTCTTACACGAAAACACATAT
36401849 CAGAATTTTA
Statistics
Matches: 68, Mismatches: 14, Indels: 8
0.76 0.16 0.09
Matches are distributed among these distances:
42 19 0.28
43 7 0.10
44 11 0.16
45 31 0.46
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.25
Consensus pattern (45 bp):
CGATGCCAATGTCCCAGACGTGGTCTTACACGAAAACACATATAT
Found at i:36414357 original size:27 final size:27
Alignment explanation
Indices: 36414327--36414416 Score: 89
Period size: 27 Copynumber: 3.3 Consensus size: 27
36414317 TATAAGATAT
*
36414327 AATGACTGTAATTTCCCTTGTGGGTAA
1 AATGACTGTATTTTCCCTTGTGGGTAA
*
36414354 AATGACTAT-TTTTCCCTTGT-GGTACAA
1 AATGACTGTATTTTCCCTTGTGGGT--AA
*
36414381 AATGAC--TATTTTGCCCTTGTGAGGCAA
1 AATGACTGTATTTT-CCCTTGTG-GGTAA
36414408 AATGACTGT
1 AATGACTGT
36414417 TTTGCCCCTA
Statistics
Matches: 52, Mismatches: 3, Indels: 14
0.75 0.04 0.20
Matches are distributed among these distances:
25 4 0.08
26 14 0.27
27 31 0.60
29 3 0.06
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.37
Consensus pattern (27 bp):
AATGACTGTATTTTCCCTTGTGGGTAA
Found at i:36414419 original size:27 final size:26
Alignment explanation
Indices: 36414341--36414423 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
36414331 ACTGTAATTT
* *
36414341 CCCTTGTGGGTAAAATGACTATTTTT
1 CCCTTGTGGGCAAAATGACTATTTTG
*
36414367 CCCTTGTGGTACAAAATGACTATTTTG
1 CCCTTGTGG-GCAAAATGACTATTTTG
*
36414394 CCCTTGTGAGGCAAAATGACTGTTTTG
1 CCCTTGTG-GGCAAAATGACTATTTTG
36414421 CCC
1 CCC
36414424 CTATGTGATG
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 9 0.18
27 40 0.80
28 1 0.02
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.36
Consensus pattern (26 bp):
CCCTTGTGGGCAAAATGACTATTTTG
Found at i:36414907 original size:34 final size:35
Alignment explanation
Indices: 36414835--36414919 Score: 118
Period size: 34 Copynumber: 2.5 Consensus size: 35
36414825 TGTATTGAGG
* *
36414835 TGGGCTTAGGCCTAGACTGTTTACTGATATTAAAA
1 TGGGCTTAGGCCCAGACTGTTTACTGATACTAAAA
* * *
36414870 TGGGCTAAGGCCCAGACTG-TTACTGTTACTAATA
1 TGGGCTTAGGCCCAGACTGTTTACTGATACTAAAA
36414904 TGGGCTTAGGCCCAGA
1 TGGGCTTAGGCCCAGA
36414920 ATGTATTCGC
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
34 27 0.61
35 17 0.39
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (35 bp):
TGGGCTTAGGCCCAGACTGTTTACTGATACTAAAA
Found at i:36419495 original size:27 final size:28
Alignment explanation
Indices: 36419381--36419508 Score: 168
Period size: 28 Copynumber: 4.6 Consensus size: 28
36419371 ATCATGAGAT
* * * *
36419381 TAGCGCTAAGTGTGCGGGTTTAAATTGTA
1 TAGCACTAAGTGTGCGAGTTT-GATTATA
*
36419410 CAGCACTAAGTGTGCGAGTTTGATTATA
1 TAGCACTAAGTGTGCGAGTTTGATTATA
* *
36419438 TAGCAATAAGTGTGCGAGTTTGATTACA
1 TAGCACTAAGTGTGCGAGTTTGATTATA
36419466 TAGCACTAAGTGTGCGAG-TTGATTATA
1 TAGCACTAAGTGTGCGAGTTTGATTATA
*
36419493 TAGCACTGAGTGTGCG
1 TAGCACTAAGTGTGCG
36419509 GACTTAATAT
Statistics
Matches: 88, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
27 23 0.26
28 47 0.53
29 18 0.20
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.32
Consensus pattern (28 bp):
TAGCACTAAGTGTGCGAGTTTGATTATA
Found at i:36419519 original size:27 final size:27
Alignment explanation
Indices: 36419411--36419521 Score: 107
Period size: 28 Copynumber: 4.0 Consensus size: 27
36419401 TAAATTGTAC
* *
36419411 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* * * *
36419439 AGCAATAAGTGTGCGAGTTTGATTACAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
36419467 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
36419494 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
36419521 A
1 A
36419522 CTTTTGAATC
Statistics
Matches: 74, Mismatches: 8, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
27 29 0.39
28 45 0.61
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.32
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:36427433 original size:28 final size:28
Alignment explanation
Indices: 36427390--36427511 Score: 183
Period size: 28 Copynumber: 4.4 Consensus size: 28
36427380 GAGATTGGCG
* * * *
36427390 CTAAGTGTGCGGGTTTAATTGTACAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
36427418 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
36427446 CTAAGTGTGCGAGTTTGATTACATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
36427474 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
36427501 CTGAGTGTGCG
1 CTAAGTGTGCG
36427512 GACTTAATAT
Statistics
Matches: 87, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
27 23 0.26
28 64 0.74
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:36427522 original size:27 final size:27
Alignment explanation
Indices: 36427414--36427524 Score: 134
Period size: 28 Copynumber: 4.0 Consensus size: 27
36427404 TTAATTGTAC
*
36427414 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGATTATAT
* *
36427442 AGCACTAAGTGTGCGAGTTTGATTACAT
1 AGCACTAAGTGTGCGA-CTTGATTATAT
*
36427470 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGATTATAT
* *
36427497 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGATTATAT
36427524 A
1 A
36427525 CTTTTGAATC
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
27 29 0.38
28 47 0.62
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.32
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGATTATAT
Found at i:36429469 original size:22 final size:22
Alignment explanation
Indices: 36429437--36429480 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
36429427 GATTAATATT
*
36429437 TTATATTTAATATTTATAAATA
1 TTATATATAATATTTATAAATA
* *
36429459 TTATATATAATTTTTTTAAATA
1 TTATATATAATATTTATAAATA
36429481 CAATAAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (22 bp):
TTATATATAATATTTATAAATA
Found at i:36430689 original size:26 final size:28
Alignment explanation
Indices: 36430644--36430695 Score: 74
Period size: 26 Copynumber: 1.9 Consensus size: 28
36430634 AGAAGTGGCA
36430644 TTGTGGGAGAAGCGCTGCT-AAGGTCGT
1 TTGTGGGAGAAGCGCTGCTAAAGGTCGT
36430671 TTGT-GGAGAAGCG-TCGCTAAAGGTC
1 TTGTGGGAGAAGCGCT-GCTAAAGGTC
36430696 ATGACTTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 1 0.04
26 12 0.52
27 10 0.43
ACGTcount: A:0.21, C:0.15, G:0.38, T:0.25
Consensus pattern (28 bp):
TTGTGGGAGAAGCGCTGCTAAAGGTCGT
Found at i:36435778 original size:21 final size:21
Alignment explanation
Indices: 36435739--36435778 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
36435729 GAAGTGCTTT
* *
36435739 AACAGTAGGCACCGTAGTGAA
1 AACAATAGGCACCGAAGTGAA
*
36435760 AACAATAGGCACTGAAGTG
1 AACAATAGGCACCGAAGTG
36435779 CAGAATAGTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.40, C:0.17, G:0.28, T:0.15
Consensus pattern (21 bp):
AACAATAGGCACCGAAGTGAA
Found at i:36451732 original size:23 final size:24
Alignment explanation
Indices: 36451706--36451753 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
36451696 TATTTTCTAG
*
36451706 TCATCGTTACTTTTTTA-ATAATA
1 TCATCGTTAATTTTTTATATAATA
**
36451729 TCATTTTTAATTTTTTATATAATA
1 TCATCGTTAATTTTTTATATAATA
36451753 T
1 T
36451754 TAAAAGTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 14 0.67
24 7 0.33
ACGTcount: A:0.31, C:0.08, G:0.02, T:0.58
Consensus pattern (24 bp):
TCATCGTTAATTTTTTATATAATA
Found at i:36452332 original size:29 final size:29
Alignment explanation
Indices: 36452290--36452354 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
36452280 CTAAAACAGG
*
36452290 GGTCACATGCCTATGCGGGCAGGGTGTGT
1 GGTCACATGCCTATGCGGGCAGGGCGTGT
*
36452319 GGTCACATGCCTATGTGGGCAGGGCGTGT
1 GGTCACATGCCTATGCGGGCAGGGCGTGT
36452348 GGTCACA
1 GGTCACA
36452355 CACGCCCGTG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.15, C:0.22, G:0.40, T:0.23
Consensus pattern (29 bp):
GGTCACATGCCTATGCGGGCAGGGCGTGT
Found at i:36454096 original size:42 final size:42
Alignment explanation
Indices: 36453989--36454147 Score: 214
Period size: 42 Copynumber: 3.8 Consensus size: 42
36453979 TACCAATCCT
*
36453989 ATATCCCAGATATGGTCTTACATGTAATCTCATATCGATGCC
1 ATATCCCAGATATGGTCTTACACGTAATCTCATATCGATGCC
* * * *
36454031 AATAGCCTAGCTATGGTCTTACACG-AAGTCTCATATCGATGTC
1 -ATATCCCAGATATGGTCTTACACGTAA-TCTCATATCGATGCC
*
36454074 ATATCCCAGATATGGTCTTACACG-AACTCTCATATAGATGCC
1 ATATCCCAGATATGGTCTTACACGTAA-TCTCATATCGATGCC
*
36454116 ATATCCCAGATATTGTCTTACACGTAATCTCA
1 ATATCCCAGATATGGTCTTACACGTAATCTCA
36454148 GTAACCCTAA
Statistics
Matches: 102, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
42 66 0.65
43 36 0.35
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.31
Consensus pattern (42 bp):
ATATCCCAGATATGGTCTTACACGTAATCTCATATCGATGCC
Found at i:36455828 original size:126 final size:125
Alignment explanation
Indices: 36455633--36456139 Score: 585
Period size: 126 Copynumber: 4.1 Consensus size: 125
36455623 TTTTTTTGTT
* * * *
36455633 CAGTAGTTTTTGAAAAAATAATTTT--G-AGATGGTTCTGAAAATATAATATCAAAAACGCTTCA
1 CAGTAGTTTCTG-AAAAATAATTTTGAGAAGATGGTTCTGAAAAAATAGTGTCAAAAACGCTTCA
* * **
36455695 AGCAGGATGCATTATCAGCAAAACTACTAAAAAAAGCTCCCACATGGATGCTCTTTTTCTA
65 AGCAGGATGCACTATCAGCAAAAGTACTAAAAAAAGCTCCCACATGGACACTCTTTTTCTA
* * * * * *
36455756 CAGTAGTTTCTGAAAATTTTATTTTGAGAAGACGGTTCTGAAAAAATATTGTCAGAAACACTTCA
1 CAGTAGTTTCTGAAAA-ATAATTTTGAGAAGATGGTTCTGAAAAAATAGTGTCAAAAACGCTTCA
* * * * ** * *
36455821 AGTAGGATGTACTGTTAGCAAAAGTACTGTAAAAAGCTCTCACGTGGACACTCTTTTTCTA
65 AGCAGGATGCACTATCAGCAAAAGTACTAAAAAAAGCTCCCACATGGACACTCTTTTTCTA
* *
36455882 CAGTAGTTTCTAAAAAATAATTTTGAGAAGATGGTTCT-AAAAATATAGTGT-AAAAAGTGCTTC
1 CAGTAGTTTCTGAAAAATAATTTTGAGAAGATGGTTCTGAAAAA-ATAGTGTCAAAAA-CGCTTC
* * * ** *
36455945 AAGCAGGATGCACTGTCAGCAAAAGAACTAAAAAAAGCTCGCACATGGATGCTCTTTTTCAA
64 AAGCAGGATGCACTATCAGCAAAAGTACTAAAAAAAGCTCCCACATGGACACTCTTTTTCTA
* * * *
36456007 TAGTAGTTTATGAAGAAATAATTTTGAGAAGATAGTTCTGAAAAAATAGTGTCAAAAATGCTTCA
1 CAGTAGTTTCTGAA-AAATAATTTTGAGAAGATGGTTCTGAAAAAATAGTGTCAAAAACGCTTCA
* * * *
36456072 AGCAGGATGCACTATCA-CAAAAGTGCTGAAAAAAGTTCCCACGTGGACACTCTTTTTCTA
65 AGCAGGATGCACTATCAGCAAAAGTACTAAAAAAAGCTCCCACATGGACACTCTTTTTCTA
36456132 CAGTAGTT
1 CAGTAGTT
36456140 CCTGCTTGAC
Statistics
Matches: 320, Mismatches: 55, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
122 4 0.01
123 17 0.05
124 9 0.03
125 133 0.42
126 147 0.46
127 10 0.03
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.30
Consensus pattern (125 bp):
CAGTAGTTTCTGAAAAATAATTTTGAGAAGATGGTTCTGAAAAAATAGTGTCAAAAACGCTTCAA
GCAGGATGCACTATCAGCAAAAGTACTAAAAAAAGCTCCCACATGGACACTCTTTTTCTA
Found at i:36458319 original size:16 final size:16
Alignment explanation
Indices: 36458300--36458330 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
36458290 CTTCTTCACT
36458300 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
36458316 TACTTACTTACTTAA
1 TACTCACTTACTTAA
36458331 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:36458336 original size:20 final size:20
Alignment explanation
Indices: 36458297--36458336 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
36458287 AAACTTCTTC
* *
36458297 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
36458317 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
36458337 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:36458652 original size:53 final size:55
Alignment explanation
Indices: 36458570--36458722 Score: 186
Period size: 55 Copynumber: 2.8 Consensus size: 55
36458560 ATCCTTTTGA
* * *
36458570 AACTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCC-T-TATG
1 AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATATG
* * * * *
36458623 AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTTCCTTATATT
1 AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCC-TTGCCTTATATG
* *
36458678 AACTCATCAATGCCATGTCTTGACATGGTGTTACATGGTATCCTT
1 AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTT
36458723 AAACCCTAAT
Statistics
Matches: 83, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
52 2 0.02
53 38 0.46
54 1 0.01
55 40 0.48
56 2 0.02
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.35
Consensus pattern (55 bp):
AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATATG
Found at i:36459348 original size:27 final size:27
Alignment explanation
Indices: 36459310--36459364 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
36459300 AATTCCAAGC
36459310 TTCATATTCTACCATAAAACATCAAAA
1 TTCATATTCTACCATAAAACATCAAAA
36459337 TTCATATTCTACCATAAAACATCAAAA
1 TTCATATTCTACCATAAAACATCAAAA
36459364 T
1 T
36459365 AAACACATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.47, C:0.22, G:0.00, T:0.31
Consensus pattern (27 bp):
TTCATATTCTACCATAAAACATCAAAA
Found at i:36465158 original size:38 final size:38
Alignment explanation
Indices: 36465116--36465765 Score: 934
Period size: 38 Copynumber: 17.1 Consensus size: 38
36465106 TTAAGCTCGA
* * **
36465116 ATATAATACTAGCACTAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATAAAACCCGG
* * *
36465154 ATATAATACCAGCACGAAGCTTGTGGGAT-AAACCCGA
1 ATATAATACCAGCACGAAGCCTGCGGGATAAAACCCGG
*
36465191 ATATAATACCAGCACGAAGCCTGCGGGATAAAACCCAG
1 ATATAATACCAGCACGAAGCCTGCGGGATAAAACCCGG
*
36465229 ATATAATACCAGCACGAAGCCTGCGGAATAAAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATAAAACCCGG
* *
36465267 ATATAATACCAGCACGAAGCCTGTGGGATAAAACCCGA
1 ATATAATACCAGCACGAAGCCTGCGGGATAAAACCCGG
* * *
36465305 ATATAATACCAACACGAAGCCTGTGGGATAAAACCCGA
1 ATATAATACCAGCACGAAGCCTGCGGGATAAAACCCGG
* * **
36465343 ATATAACACCAGTACGAAGCCTGCGGGATAAAACCTAG
1 ATATAATACCAGCACGAAGCCTGCGGGATAAAACCCGG
*
36465381 ATATAATACCAGCACTAAGCCTGCGGGATAAAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATAAAACCCGG
*
36465419 ATATAATACCAGCACAAAGCCTGCGGGATAAAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATAAAACCCGG
* *
36465457 ATATAATACGAGCACGAAGCCTGTGGGAT-AAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATAAAACCCGG
* * *
36465494 --AT-ATAGCAGCACGAAGCCTGCAGGATAAAACCTGG
1 ATATAATACCAGCACGAAGCCTGCGGGATAAAACCCGG
*
36465529 ATATAATACCAGCACGAAGCCTGCGGGATAAAACCCAG
1 ATATAATACCAGCACGAAGCCTGCGGGATAAAACCCGG
* *
36465567 ATATAATACCAGCACTAAGGCTGCGGGATAAAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATAAAACCCGG
*
36465605 ATATAATACCAGCACGAAGCCTGCAGGATAAAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATAAAACCCGG
36465643 ATATAATACCAGCACGAAGCCTGCGGGAT-AAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATAAAACCCGG
36465680 ATATAATACCAGCACGAAGCCTAGCCTGCGGAATAAAACCCGG
1 ATATAATACCAGCACGAAGCCT-G-C-G-GG-ATAAAACCCGG
* *
36465723 ATATAATACCAGCACGAAACCTGCGGGATAAAACCTGG
1 ATATAATACCAGCACGAAGCCTGCGGGATAAAACCCGG
36465761 ATATA
1 ATATA
36465766 CATCAAATAT
Statistics
Matches: 551, Mismatches: 50, Indels: 22
0.88 0.08 0.04
Matches are distributed among these distances:
34 20 0.04
35 9 0.02
37 73 0.13
38 409 0.74
39 3 0.01
40 2 0.00
41 3 0.01
42 3 0.01
43 29 0.05
ACGTcount: A:0.38, C:0.25, G:0.22, T:0.16
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATAAAACCCGG
Found at i:36471677 original size:16 final size:16
Alignment explanation
Indices: 36471656--36471698 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
36471646 TTATTAGATT
36471656 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
36471672 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
36471687 AT-TATGTTAATT
1 ATATATTTTAATT
36471699 TATATTTTAC
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
14 2 0.09
15 16 0.70
16 5 0.22
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:36471691 original size:120 final size:120
Alignment explanation
Indices: 36471540--36472053 Score: 937
Period size: 120 Copynumber: 4.3 Consensus size: 120
36471530 TAAACAATAA
* *
36471540 ATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTT-TCA-TTTATAGTATCATATATT
1 ATTTTAATTATAATATATTTAATAATAATTATGTT--AATTTAT-ATTTTATAGTATCATATATT
*
36471602 ATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAGATTATAT
63 ATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATAT
*
36471660 ATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATG
1 ATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATG
36471725 ATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATAT
66 ATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATAT
36471780 ATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATG
1 ATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATG
36471845 ATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATAT
66 ATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATAT
36471900 ATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATG
1 ATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATG
36471965 ATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATT-AATTATAT
66 ATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATAT
36472019 ATTTTAATTATAATATATTTAATAATAATTATGTT
1 ATTTTAATTATAATATATTTAATAATAATTATGTT
36472054 TAAATATGAT
Statistics
Matches: 386, Mismatches: 5, Indels: 7
0.97 0.01 0.02
Matches are distributed among these distances:
119 49 0.13
120 335 0.87
121 2 0.01
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (120 bp):
ATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATG
ATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATAT
Found at i:36471719 original size:59 final size:59
Alignment explanation
Indices: 36471643--36472053 Score: 253
Period size: 59 Copynumber: 6.9 Consensus size: 59
36471633 ATTATTAAGA
*
36471643 ATTTTATTAG-ATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTAT
1 ATTTTA-TAGTATCATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTAT
* * * * * * * *
36471702 ATTTTACAGTATCATATATTATGATTTGAGTAA-ATTCATATAAGAAT-ATTA-ATT-ATTAAGA
1 ATTTTATAGTATCATATATT-TTAATT-A-TAATA-T-ATTTAATAATAATTATGTTAATTTA-T
* *
36471763 ATTTTATTA-AATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTAT
1 ATTTTA-TAGTATCATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTAT
* * * * * * *
36471822 ATTTTATAGTATCATATATTATGATTTGAGTAA-ATTCATATAAGAAT-ATTA-ATT-ATTAAGA
1 ATTTTATAGTATCATATATT-TTAATT-A-TAATA-T-ATTTAATAATAATTATGTTAATTTA-T
* *
36471883 ATTTTATTA-AATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTAT
1 ATTTTA-TAGTATCATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTAT
* * * * * * *
36471942 ATTTTATAGTATCATATATTATGATTTGAGTAA-ATTCATATAAGAAT-ATTA-ATT-ATTAAGA
1 ATTTTATAGTATCATATATT-TTAATT-A-TAATA-T-ATTTAATAATAATTATGTTAATTTA-T
*
36472003 ATTTTAT--TAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
1 ATTTTATAGT-ATCATATATTTTAATTATAATATATTTAATAATAATTATGTT
36472054 TAAATATGAT
Statistics
Matches: 265, Mismatches: 52, Indels: 71
0.68 0.13 0.18
Matches are distributed among these distances:
56 8 0.03
57 24 0.09
58 26 0.10
59 58 0.22
60 49 0.18
61 49 0.18
62 27 0.10
63 24 0.09
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.51
Consensus pattern (59 bp):
ATTTTATAGTATCATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTAT
Found at i:36471802 original size:15 final size:15
Alignment explanation
Indices: 36471767--36471818 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
36471757 TTAAGAATTT
*
36471767 TATTAAATTAT-ATA
1 TATTTAATTATAATA
36471781 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
36471795 TATTTAATAATAAT-
1 TATTTAATTATAATA
36471809 TATGTTAATT
1 TAT-TTAATT
36471819 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:36471922 original size:15 final size:15
Alignment explanation
Indices: 36471887--36471938 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
36471877 TTAAGAATTT
*
36471887 TATTAAATTAT-ATA
1 TATTTAATTATAATA
36471901 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
36471915 TATTTAATAATAAT-
1 TATTTAATTATAATA
36471929 TATGTTAATT
1 TAT-TTAATT
36471939 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:36472022 original size:16 final size:16
Alignment explanation
Indices: 36472015--36472056 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
36472005 TTTATTAATT
36472015 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
36472031 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
36472046 AT-TATGTTTAA
1 ATATAT-TTTAA
36472057 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:36472027 original size:13 final size:15
Alignment explanation
Indices: 36472009--36472047 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
36471999 AAGAATTTTA
36472009 TTAATTAT-ATAT-T
1 TTAATTATAATATAT
36472022 TTAATTATAATATAT
1 TTAATTATAATATAT
*
36472037 TTAATAATAAT
1 TTAATTATAAT
36472048 TATGTTTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 8 0.35
14 4 0.17
15 11 0.48
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
TTAATTATAATATAT
Found at i:36472168 original size:156 final size:156
Alignment explanation
Indices: 36471991--36472298 Score: 564
Period size: 156 Copynumber: 2.0 Consensus size: 156
36471981 ATAAGAATAT
*
36471991 TAATTATTAAGAATTTTATT-AATTATATATTTTAATTATAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATA-TTTAATTAAAATATATTTAATAATAATTATGTTT
* *
36472055 AAATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAA
65 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
36472120 TAATAATTTACCAAAACAAATTTCTGC
130 TAATAATTTACCAAAACAAATTTCTGC
36472147 TAATTATTAAGAATTTTATTAAATTATATATTTAATTAAAATATATTTAATAATAATTATGTTTA
1 TAATTATTAAGAATTTTATTAAATTATATATTTAATTAAAATATATTTAATAATAATTATGTTTA
36472212 AATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAAT
66 AATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAAT
*
36472277 AATCATTTACCAAAACAAATTT
131 AATAATTTACCAAAACAAATTT
36472299 ATGTTAAGGG
Statistics
Matches: 147, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
156 138 0.94
157 9 0.06
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (156 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTAATTAAAATATATTTAATAATAATTATGTTTA
AATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAAT
AATAATTTACCAAAACAAATTTCTGC
Found at i:36472179 original size:17 final size:17
Alignment explanation
Indices: 36472159--36472192 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
36472149 ATTATTAAGA
* *
36472159 ATTTTATTAAATTATAT
1 ATTTAATTAAAATATAT
36472176 ATTTAATTAAAATATAT
1 ATTTAATTAAAATATAT
36472193 TTAATAATAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
ATTTAATTAAAATATAT
Found at i:36472813 original size:36 final size:32
Alignment explanation
Indices: 36472745--36472809 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
36472735 CCTCGGCCTC
36472745 ACACGAAAACATGACACTGACTGAATTGATAG
1 ACACGAAAACATGACACTGACTGAATTGATAG
*
36472777 ACACGCAAACATGACACTGACTGAATTGATAG
1 ACACGAAAACATGACACTGACTGAATTGATAG
36472809 A
1 A
36472810 TAGAACCATC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.43, C:0.20, G:0.18, T:0.18
Consensus pattern (32 bp):
ACACGAAAACATGACACTGACTGAATTGATAG
Found at i:36481789 original size:49 final size:49
Alignment explanation
Indices: 36481623--36481847 Score: 263
Period size: 49 Copynumber: 4.5 Consensus size: 49
36481613 TGAGGTCGCA
* * * *
36481623 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTC-GAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CGGATAA-T-TGGTCACG
* * * * ** *
36481674 TGTGTAGTACTAAGTGTAGGCTACTAAGTGTATCAGATGGTTAAGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCACG
*
36481724 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCATG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
* * *
36481773 TGTGTAGTCCTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
*
36481822 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
36481848 TGCGTACCAG
Statistics
Matches: 149, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
49 75 0.50
50 43 0.29
51 31 0.21
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
Found at i:36494495 original size:48 final size:48
Alignment explanation
Indices: 36494440--36494772 Score: 323
Period size: 48 Copynumber: 6.9 Consensus size: 48
36494430 AGGTTAAATT
* *
36494440 GCCGATGCCATGTCCCAGACATGGTTTTACACTAGCT-TACATGTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CATATCGAG
* * *
36494488 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCGAG
* * ** *
36494536 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTTAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCGAG
* *
36494584 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAT-GTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-ATCGAG
* * * * * * *
36494632 GCCAACGCCATGTCCTAGACATGGTCTTACACTAGCACACATATTGAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCGAG
* * * * * * *
36494680 ACCGGTGCCATATCCCAGACATGGTCATACACTGGCTCTCATAAC-ATT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCGA-G
* * * * *
36494728 ACCGATGCCATGTTCCA-AGCATTGTCTTACACTAGCACACATATC
1 GCCGATGCCATGTCCCAGA-CATGGTCTTACACTAGCTCTCATATC
36494773 ACCCAATGTT
Statistics
Matches: 240, Mismatches: 40, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
47 4 0.02
48 234 0.98
49 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCGAG
Found at i:36494702 original size:144 final size:144
Alignment explanation
Indices: 36494442--36494721 Score: 366
Period size: 144 Copynumber: 1.9 Consensus size: 144
36494432 GTTAAATTGC
* * * *
36494442 CGATGCCATGTCCCAGACATGGTTTTACACTAGCTTACATGTCGAGGCCGATGCCATGTCCCAGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATATCGAGGCCAACGCCATGTCCCAGA
* * * *** * *
36494507 CATGGTCTTACACTAGCTCTCATCTCAATGTCGATGCCATGTCCCAGACATGGTCTTACACTAGC
66 CATGGTCTTACACTAGCACACATATCAACACCGATGCCATATCCCAGACATGGTCATACACTAGC
36494572 TCTCATCTTAATGT
131 TCTCATCTTAATGT
* *
36494586 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CATAAT-GTGGCCAACGCCATGTCCTA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCT-TACAT-ATCGAGGCCAACGCCATGTCCCA
** * *
36494649 GACATGGTCTTACACTAGCACACATATTGACACCGGTGCCATATCCCAGACATGGTCATACACTG
64 GACATGGTCTTACACTAGCACACATATCAACACCGATGCCATATCCCAGACATGGTCATACACTA
36494714 GCTCTCAT
129 GCTCTCAT
36494722 AACATTACCG
Statistics
Matches: 116, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
144 114 0.98
145 2 0.02
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (144 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATATCGAGGCCAACGCCATGTCCCAGA
CATGGTCTTACACTAGCACACATATCAACACCGATGCCATATCCCAGACATGGTCATACACTAGC
TCTCATCTTAATGT
Found at i:36494734 original size:144 final size:144
Alignment explanation
Indices: 36494441--36494772 Score: 364
Period size: 144 Copynumber: 2.3 Consensus size: 144
36494431 GGTTAAATTG
* * * *
36494441 CCGATGCCATGTCCCAGACATGGTTTTACACTAGCTTACATGTCGAGGCCGATGCCATGTCCCAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATATCGAGGCCAACGCCATGTCCCAG
* * * *** * *
36494506 ACATGGTCTTACACTAGCTCTCATCTCAATGTCGATGCCATGTCCCAGACATGGTCTTACACTAG
66 ACATGGTCTTACACTAGCACACATATCAACACCGATGCCATATCCCAGACATGGTCATACACTAG
*** *
36494571 CTCTCATCTTAATG
131 CTCTCATAACAATA
* * *
36494585 TCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CATAAT-GTGGCCAACGCCATGTCCT
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCT-TACAT-ATCGAGGCCAACGCCATGTCCC
** *
36494648 AGACATGGTCTTACACTAGCACACATATTGACACCGGTGCCATATCCCAGACATGGTCATACACT
64 AGACATGGTCTTACACTAGCACACATATCAACACCGATGCCATATCCCAGACATGGTCATACACT
* *
36494713 GGCTCTCATAACATTA
129 AGCTCTCATAACAATA
* * **
36494729 CCGATGCCATGTTCCA-AGCATTGTCTTACACTAGCACACATATC
1 CCGATGCCATGTCCCAGA-CATGGTCTTACACTAGCTTACATATC
36494773 ACCCAATGTT
Statistics
Matches: 154, Mismatches: 29, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
143 3 0.02
144 149 0.97
145 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.27
Consensus pattern (144 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATATCGAGGCCAACGCCATGTCCCAG
ACATGGTCTTACACTAGCACACATATCAACACCGATGCCATATCCCAGACATGGTCATACACTAG
CTCTCATAACAATA
Found at i:36494764 original size:96 final size:96
Alignment explanation
Indices: 36494437--36494771 Score: 357
Period size: 96 Copynumber: 3.5 Consensus size: 96
36494427 AAGAGGTTAA
* * ** * ** **
36494437 ATTGCCGATGCCATGTCCCAGACATGGTTTTACACTAGCTTACATGTCGAGGCCGATGCCATGTC
1 ATTGCCGATGCCATGTCCAAGACATGGTCTTACACTAGCACACATATTAACACCGATGCCATGTC
**
36494502 CCAGACATGGTCTTACACTAGCTCTCATCTC
66 CCAGACATGGTCTTACACTAGCTCTCATAAC
* * * * * * ***
36494533 AATGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTTAATGTCGATGCCATGTC
1 ATTGCCGATGCCATGTCCAAGACATGGTCTTACACTAGCACACATATTAACACCGATGCCATGTC
*
36494598 CCAGACATGGTCTTACACTAGCTCTCATAAT
66 CCAGACATGGTCTTACACTAGCTCTCATAAC
* * * * * * * *
36494629 GTGGCCAACGCCATGTCCTAGACATGGTCTTACACTAGCACACATATTGACACCGGTGCCATATC
1 ATTGCCGATGCCATGTCCAAGACATGGTCTTACACTAGCACACATATTAACACCGATGCCATGTC
* *
36494694 CCAGACATGGTCATACACTGGCTCTCATAAC
66 CCAGACATGGTCTTACACTAGCTCTCATAAC
* *
36494725 ATTACCGATGCCATGTTCCAAG-CATTGTCTTACACTAGCACACATAT
1 ATTGCCGATGCCATG-TCCAAGACATGGTCTTACACTAGCACACATAT
36494772 CACCCAATGT
Statistics
Matches: 199, Mismatches: 39, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
96 194 0.97
97 5 0.03
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (96 bp):
ATTGCCGATGCCATGTCCAAGACATGGTCTTACACTAGCACACATATTAACACCGATGCCATGTC
CCAGACATGGTCTTACACTAGCTCTCATAAC
Found at i:36497983 original size:27 final size:27
Alignment explanation
Indices: 36497961--36498024 Score: 92
Period size: 27 Copynumber: 2.4 Consensus size: 27
36497951 TGCCAGAAAC
*
36497961 AGTAAATGTGGCAAAGCCACCAGTATT
1 AGTAAATGTGGCAAAGCCACCAGTAAT
* *
36497988 AGTAATTGTGGCATAGCCACCAGTAAT
1 AGTAAATGTGGCAAAGCCACCAGTAAT
*
36498015 AGTGAATGTG
1 AGTAAATGTG
36498025 ACTTAGTCAC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (27 bp):
AGTAAATGTGGCAAAGCCACCAGTAAT
Found at i:36498035 original size:27 final size:27
Alignment explanation
Indices: 36497961--36498039 Score: 79
Period size: 27 Copynumber: 2.9 Consensus size: 27
36497951 TGCCAGAAAC
* * * *
36497961 AGTAAATGTGGCAAAGCCACCAGTATT
1 AGTAATTGTGACATAGCCACCAGTAAT
*
36497988 AGTAATTGTGGCATAGCCACCAGTAAT
1 AGTAATTGTGACATAGCCACCAGTAAT
* *
36498015 AGTGAA-TGTGACTTAGTCACCAGTA
1 AGT-AATTGTGACATAGCCACCAGTA
36498040 CAGTACTTCC
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
27 43 0.96
28 2 0.04
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (27 bp):
AGTAATTGTGACATAGCCACCAGTAAT
Found at i:36498211 original size:27 final size:27
Alignment explanation
Indices: 36498180--36498313 Score: 153
Period size: 27 Copynumber: 5.0 Consensus size: 27
36498170 GGGCATAATC
* *
36498180 GTCATATTACCATACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* * * **
36498207 GTCATTTTACCCTATA-TGGAATTATA
1 GTCATTTTACCCTACAGGGGTATTACG
*
36498233 GTCATTTTACCCTATAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
*
36498260 GTCATTTTACCCTACAGGGGTATTACA
1 GTCATTTTACCCTACAGGGGTATTACG
* * *
36498287 ATCATTTTACCTTACAGGGGTGTTACG
1 GTCATTTTACCCTACAGGGGTATTACG
36498314 ATCAGATAAC
Statistics
Matches: 89, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
26 22 0.25
27 67 0.75
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGTATTACG
Found at i:36501268 original size:19 final size:20
Alignment explanation
Indices: 36501231--36501268 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
36501221 ATAAGGTGGT
36501231 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
36501251 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
36501269 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:36504629 original size:27 final size:27
Alignment explanation
Indices: 36504565--36504741 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
36504555 TAAATTGTAC
36504565 AGCACTAAGTGTGCGATTTGACT-TGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
36504591 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36504617 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
36504645 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
36504673 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36504700 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
36504727 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36504742 GACTCAATAT
Statistics
Matches: 128, Mismatches: 19, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
26 19 0.15
27 86 0.67
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:36504681 original size:82 final size:80
Alignment explanation
Indices: 36504566--36504720 Score: 222
Period size: 82 Copynumber: 1.9 Consensus size: 80
36504556 AAATTGTACA
* *
36504566 GCACTAAGTGTGCGATTTGACTTGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTTGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTGT
36504630 GCGAATTGACCATGCG
65 GCGAATTGACCATGCG
** *
36504646 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACT-TGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
36504711 TGCGAGTTGA
64 TGCGAATTGA
36504721 TTATATAGCA
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
80 15 0.23
81 7 0.11
82 43 0.65
83 1 0.02
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (80 bp):
GCACTAAGTGTGCGATTTGACTTGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGTG
CGAATTGACCATGCG
Found at i:36504688 original size:55 final size:53
Alignment explanation
Indices: 36504565--36504741 Score: 194
Period size: 55 Copynumber: 3.3 Consensus size: 53
36504555 TAAATTGTAC
* * **
36504565 AGCACTAAGTGTGCGATTTGACTTGTTGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACATGTAGCACTAAGTGTGCGAGTTGAATATGT
* ** *
36504617 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGT
1 A-GCACTAAGTGTGCGATTTGA-CATGTAGCACTAAGTGTGCGAG-TTGAATATGT
* * * *
36504673 AGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGA-CATGTAGCACTAAGTGTGCGAGTTGAATATGT
*
36504727 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36504742 GACTCAATAT
Statistics
Matches: 105, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
52 1 0.01
53 19 0.18
54 40 0.38
55 44 0.42
56 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (53 bp):
AGCACTAAGTGTGCGATTTGACATGTAGCACTAAGTGTGCGAGTTGAATATGT
Found at i:36504732 original size:82 final size:80
Alignment explanation
Indices: 36504562--36504741 Score: 218
Period size: 82 Copynumber: 2.2 Consensus size: 80
36504552 GATTAAATTG
* *
36504562 TACAGCACTAAGTGTGCGATTTGACTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAG
1 TACAGCACTAAGTGTGCGATTTGACTTGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAG
36504627 TGTGCGAATTGACCA
66 TGTGCGAATTGACCA
* * ** *
36504642 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACT-TGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
36504706 AAGTGTGCGAGTTGATTA
63 AAGTGTGCGAATTGACCA
* *
36504724 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
36504742 GACTCAATAT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
80 17 0.20
81 8 0.10
82 58 0.70
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.30
Consensus pattern (80 bp):
TACAGCACTAAGTGTGCGATTTGACTTGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAG
TGTGCGAATTGACCA
Found at i:36508401 original size:16 final size:16
Alignment explanation
Indices: 36508332--36508399 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
36508322 TTTGGTTCGC
36508332 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
36508348 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
36508364 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
36508380 TGTAATGGAATAGAGG
1 TGTATTGGATTAGAGG
36508396 TGTA
1 TGTA
36508400 ATAGCAAATC
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.28, C:0.00, G:0.37, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:36508434 original size:45 final size:44
Alignment explanation
Indices: 36508380--36508474 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 44
36508370 GGATTAGAGG
* *
36508380 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAAC-ACTGTTTGGTTGAA
* **
36508425 TGTAATGGAATAGAGGCGTAATAGTAAAACTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
36508469 TGTAAT
1 TGTAAT
36508475 AGAGGTGTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.33
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
Found at i:36508657 original size:18 final size:17
Alignment explanation
Indices: 36508636--36508670 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
36508626 TTATTATTTA
36508636 ATATATTTTAATTAAAAT
1 ATATATTTTAA-TAAAAT
36508654 ATATATTTTAATAAAAT
1 ATATATTTTAATAAAAT
36508671 TCTTAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
ATATATTTTAATAAAAT
Found at i:36508861 original size:26 final size:28
Alignment explanation
Indices: 36508832--36508903 Score: 85
Period size: 28 Copynumber: 2.6 Consensus size: 28
36508822 TATGAATTTG
*
36508832 TATAATTTAA-AATAAT-TATTATTACA
1 TATAATTTAATAATAATATATAATTACA
*
36508858 TATAATTTAATAATAATATATAATTTCA
1 TATAATTTAATAATAATATATAATTACA
*
36508886 TAAAATTCTTAATAATAA
1 TATAA-T-TTAATAATAA
36508904 ATTTTCTTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
26 10 0.26
27 6 0.15
28 12 0.31
29 1 0.03
30 10 0.26
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.44
Consensus pattern (28 bp):
TATAATTTAATAATAATATATAATTACA
Found at i:36509099 original size:22 final size:22
Alignment explanation
Indices: 36509071--36509115 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
36509061 ACTAAGCTTG
36509071 AATTTCATTAAATTACTTTCAA
1 AATTTCATTAAATTACTTTCAA
36509093 AATTTCATTAAATTACTTTCAA
1 AATTTCATTAAATTACTTTCAA
36509115 A
1 A
36509116 GTTAAGGATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.42, C:0.13, G:0.00, T:0.44
Consensus pattern (22 bp):
AATTTCATTAAATTACTTTCAA
Found at i:36516211 original size:27 final size:27
Alignment explanation
Indices: 36516147--36516323 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
36516137 TAAATTGTAC
36516147 AGCACTAAGTGTGCGATTTGACT-TGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
36516173 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36516199 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
36516227 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
36516255 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36516282 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
36516309 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36516324 GACTCAATAT
Statistics
Matches: 128, Mismatches: 19, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
26 19 0.15
27 86 0.67
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:36516263 original size:82 final size:80
Alignment explanation
Indices: 36516148--36516302 Score: 222
Period size: 82 Copynumber: 1.9 Consensus size: 80
36516138 AAATTGTACA
* *
36516148 GCACTAAGTGTGCGATTTGACTTGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTTGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTGT
36516212 GCGAATTGACCATGCG
65 GCGAATTGACCATGCG
** *
36516228 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACT-TGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
36516293 TGCGAGTTGA
64 TGCGAATTGA
36516303 TTATATAGCA
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
80 15 0.23
81 7 0.11
82 43 0.65
83 1 0.02
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (80 bp):
GCACTAAGTGTGCGATTTGACTTGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGTG
CGAATTGACCATGCG
Found at i:36516270 original size:55 final size:53
Alignment explanation
Indices: 36516147--36516323 Score: 194
Period size: 55 Copynumber: 3.3 Consensus size: 53
36516137 TAAATTGTAC
* * **
36516147 AGCACTAAGTGTGCGATTTGACTTGTTGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACATGTAGCACTAAGTGTGCGAGTTGAATATGT
* ** *
36516199 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGT
1 A-GCACTAAGTGTGCGATTTGA-CATGTAGCACTAAGTGTGCGAG-TTGAATATGT
* * * *
36516255 AGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGA-CATGTAGCACTAAGTGTGCGAGTTGAATATGT
*
36516309 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36516324 GACTCAATAT
Statistics
Matches: 105, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
52 1 0.01
53 19 0.18
54 40 0.38
55 44 0.42
56 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (53 bp):
AGCACTAAGTGTGCGATTTGACATGTAGCACTAAGTGTGCGAGTTGAATATGT
Found at i:36516314 original size:82 final size:80
Alignment explanation
Indices: 36516144--36516323 Score: 218
Period size: 82 Copynumber: 2.2 Consensus size: 80
36516134 GATTAAATTG
* *
36516144 TACAGCACTAAGTGTGCGATTTGACTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAG
1 TACAGCACTAAGTGTGCGATTTGACTTGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAG
36516209 TGTGCGAATTGACCA
66 TGTGCGAATTGACCA
* * ** *
36516224 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACT-TGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
36516288 AAGTGTGCGAGTTGATTA
63 AAGTGTGCGAATTGACCA
* *
36516306 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
36516324 GACTCAATAT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
80 17 0.20
81 8 0.10
82 58 0.70
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.30
Consensus pattern (80 bp):
TACAGCACTAAGTGTGCGATTTGACTTGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAG
TGTGCGAATTGACCA
Found at i:36523315 original size:48 final size:48
Alignment explanation
Indices: 36523200--36523472 Score: 219
Period size: 48 Copynumber: 5.7 Consensus size: 48
36523190 ATAAATTGCT
* * * * *
36523200 GATGCCATATCCCAGACATGGTCTTACACTAGGT-TACATGTCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CATATCAATGCC
* * * * *
36523248 AATACCTTGTCCTAGACATGGTCTTACACTAGCTCTCATCTCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCC
* * * * *
36523296 GATGCCTTATCCCAAACATGGTCTTACACTGGCTCTCATA--ATGTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCA-AT-GCC
* * * * * * *
36523344 GACGCCATGTCCCAGACATTGTCTTACATTAGCACACATATCGATGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCC
* * * * *
36523392 GATGCCATGCCCCATACATGGTCTTACACTGGCTCTCATAACATTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCC
* * * *
36523440 AATGCCATGTACCAAACATGGTATTACACTAGC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGC
36523473 ATACATATCA
Statistics
Matches: 173, Mismatches: 47, Indels: 10
0.75 0.20 0.04
Matches are distributed among these distances:
46 1 0.01
47 1 0.01
48 169 0.98
49 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCC
Found at i:36523368 original size:96 final size:96
Alignment explanation
Indices: 36523255--36523482 Score: 267
Period size: 96 Copynumber: 2.4 Consensus size: 96
36523245 GCCAATACCT
* * * * * *
36523255 TGTCCTAGACATGGTCTTACACTAGCTCTCATCTCAATGCCGATGCCTTATCCCAAACATGGTCT
1 TGTCCCAGACATGGTCTTACACTAGCACACATATCAATGCCGATGCCATACCCCAAACATGGTCT
36523320 TACACTGGCTCTCATAATGTGGCCGACGCCA
66 TACACTGGCTCTCATAATGTGGCCGACGCCA
* * * * * *
36523351 TGTCCCAGACATTGTCTTACATTAGCACACATATCGATGCTGATGCCATGCCCCATACATGGTCT
1 TGTCCCAGACATGGTCTTACACTAGCACACATATCAATGCCGATGCCATACCCCAAACATGGTCT
** * * *
36523416 TACACTGGCTCTCATAACATTGCCAATGCCA
66 TACACTGGCTCTCATAATGTGGCCGACGCCA
* * * *
36523447 TGTACCAAACATGGTATTACACTAGCATACATATCA
1 TGTCCCAGACATGGTCTTACACTAGCACACATATCA
36523483 TCCAATGTCA
Statistics
Matches: 108, Mismatches: 24, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
96 108 1.00
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.28
Consensus pattern (96 bp):
TGTCCCAGACATGGTCTTACACTAGCACACATATCAATGCCGATGCCATACCCCAAACATGGTCT
TACACTGGCTCTCATAATGTGGCCGACGCCA
Found at i:36526876 original size:96 final size:94
Alignment explanation
Indices: 36526766--36527134 Score: 639
Period size: 96 Copynumber: 3.9 Consensus size: 94
36526756 CAGCCAAGAC
36526766 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGAT
*
36526831 AAGGCTTAATGGCCGATGTGATGAATGTGAA
64 AAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
36526862 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGCGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
36526927 GGCCTAATAGCCGATGTGATGAATGTGAA
66 GGCCTAATGGCCGATGTGATGAATGTGAA
* *
36526956 AGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGAT
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
36527021 AAGGCCTAATGGCCGATGTGATGAATGTGAA
64 AAGGCCTAATGGCCGATGTGATGAATGTGAA
36527052 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
36527117 GGCCTAATGGCCGATGTG
66 GGCCTAATGGCCGATGTG
36527135 TATATATGTG
Statistics
Matches: 260, Mismatches: 11, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
94 120 0.46
96 140 0.54
ACGTcount: A:0.31, C:0.08, G:0.30, T:0.30
Consensus pattern (94 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
GGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:36526888 original size:47 final size:47
Alignment explanation
Indices: 36526766--36527134 Score: 639
Period size: 47 Copynumber: 7.8 Consensus size: 47
36526756 CAGCCAAGAC
36526766 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
36526813 AGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
36526862 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
36526909 AGTGTATATGTGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
36526956 AGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
36527005 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
36527052 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
36527099 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
36527135 TATATATGTG
Statistics
Matches: 306, Mismatches: 12, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
47 217 0.71
49 89 0.29
ACGTcount: A:0.31, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:36527024 original size:143 final size:141
Alignment explanation
Indices: 36526766--36527478 Score: 1060
Period size: 141 Copynumber: 5.1 Consensus size: 141
36526756 CAGCCAAGAC
* *
36526766 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGAT
*
36526831 AAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATG
64 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATG
36526896 TGATGAATGTGAA
129 TGATGAATGTGAA
*
36526909 AGTGTATATGTGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGAT
*
36526974 AAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATG
64 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATG
36527039 TGATGAATGTGAA
129 TGATGAATGTGAA
* *
36527052 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
36527117 GGCCTAATGGCC-----GATG--TGT---A---TATA--TGTGATAAGGCCTAATGGCCGATGTG
66 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTG
36527167 ATGAATGTGAA
131 ATGAATGTGAA
* *
36527178 AGTGTATATGTGTGACAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* *
36527243 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTG
66 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTG
36527308 ATGAATGTGAA
131 ATGAATGTGAA
* *
36527319 AGTGTATATGTGTGACAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* * * * * * * *
36527384 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTG
66 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTG
*
36527449 ATGGATGTGAA
131 ATGAATGTGAA
* **
36527460 AGTGCATAAATGTGATAAG
1 AGTGTATATGTGTGATAAG
36527479 TCCCGAAGGG
Statistics
Matches: 529, Mismatches: 26, Indels: 32
0.90 0.04 0.05
Matches are distributed among these distances:
126 109 0.21
128 4 0.01
131 5 0.01
133 3 0.01
134 3 0.01
136 5 0.01
139 4 0.01
141 208 0.39
143 188 0.36
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (141 bp):
AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTG
ATGAATGTGAA
Found at i:36527141 original size:32 final size:32
Alignment explanation
Indices: 36527100--36527166 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
36527090 GAATGTGAAA
36527100 GTGTATATATGTGATAAGGCCTAATGGCCGAT
1 GTGTATATATGTGATAAGGCCTAATGGCCGAT
36527132 GTGTATATATGTGATAAGGCCTAATGGCCGAT
1 GTGTATATATGTGATAAGGCCTAATGGCCGAT
36527164 GTG
1 GTG
36527167 ATGAATGTGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.27, C:0.12, G:0.30, T:0.31
Consensus pattern (32 bp):
GTGTATATATGTGATAAGGCCTAATGGCCGAT
Found at i:36527142 original size:79 final size:79
Alignment explanation
Indices: 36527053--36527213 Score: 295
Period size: 79 Copynumber: 2.0 Consensus size: 79
36527043 GAATGTGAAA
*
36527053 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAG
*
36527118 GCCTAATGGCCGAT
66 GCCTAATAGCCGAT
*
36527132 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGACAAG
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAG
36527197 GCCTAATAGCCGAT
66 GCCTAATAGCCGAT
36527211 GTG
1 GTG
36527214 ATGAATGTGA
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
79 79 1.00
ACGTcount: A:0.30, C:0.11, G:0.30, T:0.30
Consensus pattern (79 bp):
GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAG
GCCTAATAGCCGAT
Found at i:36527185 original size:47 final size:47
Alignment explanation
Indices: 36527132--36527478 Score: 550
Period size: 47 Copynumber: 7.4 Consensus size: 47
36527122 AATGGCCGAT
* *
36527132 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
*
36527179 GTGTATATGTGTGACAAGGCCTAATAGCCGATGTGATGAATGTGAAA
1 GTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
36527226 GTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
1 GTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
36527273 GTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
1 GTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
*
36527320 GTGTATATGTGTGACAAGGCCTAATAGCCGATGTGATGAATGTGAAA
1 GTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
36527367 GTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
1 GTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
* * * * * * * * *
36527414 GTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAA
1 GTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
* **
36527461 GTGCATAAATGTGATAAG
1 GTGTATATGTGTGATAAG
36527479 TCCCGAAGGG
Statistics
Matches: 281, Mismatches: 19, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 281 1.00
ACGTcount: A:0.32, C:0.10, G:0.31, T:0.28
Consensus pattern (47 bp):
GTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
Found at i:36527653 original size:37 final size:37
Alignment explanation
Indices: 36527601--36527675 Score: 107
Period size: 37 Copynumber: 2.0 Consensus size: 37
36527591 GCTCTAAAGG
* *
36527601 CCCGATGACTACGTGTGG-GAATTTTGTCCGGGTAAGA
1 CCCGATAACTACGTGTGGAG-ATTATGTCCGGGTAAGA
*
36527638 CCCGATAACTTCGTGTGGAGATTATGTCCGGGTAAGA
1 CCCGATAACTACGTGTGGAGATTATGTCCGGGTAAGA
36527675 C
1 C
36527676 TTCGTAATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 33 0.97
38 1 0.03
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.27
Consensus pattern (37 bp):
CCCGATAACTACGTGTGGAGATTATGTCCGGGTAAGA
Found at i:36530044 original size:34 final size:35
Alignment explanation
Indices: 36529919--36530079 Score: 227
Period size: 34 Copynumber: 4.6 Consensus size: 35
36529909 AGTACTTTAA
* *
36529919 TAATCCAACCGAAACACACTAGATGCTCATAAGAGC
1 TAATCCATCCGAAACACACCA-ATGCTCATAAGAGC
* * *
36529955 TAATCCATCTGGAACACACCAATGCTCATAAGAGT
1 TAATCCATCCGAAACACACCAATGCTCATAAGAGC
36529990 TAATCCATCCGAAACACACCAATGCTCATAAGAGC
1 TAATCCATCCGAAACACACCAATGCTCATAAGAGC
* * *
36530025 T-ATCCGTCCAAAACACACCAATGTTCATAAGAGC
1 TAATCCATCCGAAACACACCAATGCTCATAAGAGC
36530059 T-ATCCATCCGAAACACACCAA
1 TAATCCATCCGAAACACACCAA
36530080 AACAGAGAGT
Statistics
Matches: 112, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
34 49 0.44
35 46 0.41
36 17 0.15
ACGTcount: A:0.40, C:0.30, G:0.12, T:0.19
Consensus pattern (35 bp):
TAATCCATCCGAAACACACCAATGCTCATAAGAGC
Found at i:36530054 original size:69 final size:70
Alignment explanation
Indices: 36529919--36530079 Score: 227
Period size: 69 Copynumber: 2.3 Consensus size: 70
36529909 AGTACTTTAA
* * ***
36529919 TAATCCAACCGAAACACACTAGATGCTCATAAGAGCTAATCCATCTGGAACACACCAATGCTCAT
1 TAATCCATCCGAAACACACCA-ATGCTCATAAGAGCTAATCCATCCAAAACACACCAATGCTCAT
*
36529984 AAGAGT
65 AAGAGC
* *
36529990 TAATCCATCCGAAACACACCAATGCTCATAAGAGCT-ATCCGTCCAAAACACACCAATGTTCATA
1 TAATCCATCCGAAACACACCAATGCTCATAAGAGCTAATCCATCCAAAACACACCAATGCTCATA
36530054 AGAGC
66 AGAGC
36530059 T-ATCCATCCGAAACACACCAA
1 TAATCCATCCGAAACACACCAA
36530080 AACAGAGAGT
Statistics
Matches: 82, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
68 20 0.24
69 28 0.34
70 15 0.18
71 19 0.23
ACGTcount: A:0.40, C:0.30, G:0.12, T:0.19
Consensus pattern (70 bp):
TAATCCATCCGAAACACACCAATGCTCATAAGAGCTAATCCATCCAAAACACACCAATGCTCATA
AGAGC
Found at i:36535020 original size:43 final size:43
Alignment explanation
Indices: 36534959--36535081 Score: 237
Period size: 43 Copynumber: 2.8 Consensus size: 43
36534949 ACCAAGTTCA
36534959 ATATCTACATGGCAAGAATTAGCAAGAGATTTTTGGTTATTTC
1 ATATCTACATGGCAAGAATTAGCAAGAGATTTTTGGTTATTTC
36535002 ATATCTACATGGCAAGAATTAGCAAGAGATTTTTGGTTATTTC
1 ATATCTACATGGCAAGAATTAGCAAGAGATTTTTGGTTATTTC
36535045 ATATCTACATGGCAAGAATTAGCAAAGAGATTTTTGG
1 ATATCTACATGGCAAGAATTAGC-AAGAGATTTTTGG
36535082 CTAAGTATTT
Statistics
Matches: 79, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
43 66 0.84
44 13 0.16
ACGTcount: A:0.34, C:0.11, G:0.20, T:0.35
Consensus pattern (43 bp):
ATATCTACATGGCAAGAATTAGCAAGAGATTTTTGGTTATTTC
Found at i:36541283 original size:56 final size:56
Alignment explanation
Indices: 36541209--36541316 Score: 180
Period size: 56 Copynumber: 1.9 Consensus size: 56
36541199 CATATCGGCA
* *
36541209 CCAACGTATTAAACGTGGTCTTACTCGCACACATATATCAGAATCACATATCGATG
1 CCAACATATTAAACGTGGTCTTACTCGCACACATATATCAAAATCACATATCGATG
* *
36541265 CCAACATATTAAATGTGGTCTTACTCGTACACATATATCAAAATCACATATC
1 CCAACATATTAAACGTGGTCTTACTCGCACACATATATCAAAATCACATATC
36541317 AAAATCCTAT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 48 1.00
ACGTcount: A:0.36, C:0.24, G:0.11, T:0.29
Consensus pattern (56 bp):
CCAACATATTAAACGTGGTCTTACTCGCACACATATATCAAAATCACATATCGATG
Found at i:36550364 original size:27 final size:27
Alignment explanation
Indices: 36550326--36550390 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
36550316 TGGATAAGTT
36550326 GTAGAATTACCGAAATACCCTTATAGG
1 GTAGAATTACCGAAATACCCTTATAGG
* * *
36550353 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCTTATAGG
*
36550380 GTAAAATTACC
1 GTAGAATTACC
36550391 ATTTTGCCCC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCTTATAGG
Found at i:36562858 original size:12 final size:14
Alignment explanation
Indices: 36562843--36562874 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
36562833 GTGAGAACAC
36562843 ATGTGTA-G-TACT
1 ATGTGTAGGCTACT
36562855 ATGTGTAGGCTACT
1 ATGTGTAGGCTACT
36562869 ATGTGT
1 ATGTGT
36562875 TTAAGATGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.39
13 1 0.06
14 10 0.56
ACGTcount: A:0.22, C:0.09, G:0.28, T:0.41
Consensus pattern (14 bp):
ATGTGTAGGCTACT
Found at i:36563060 original size:49 final size:49
Alignment explanation
Indices: 36562842--36563078 Score: 192
Period size: 49 Copynumber: 4.7 Consensus size: 49
36562832 TGTGAGAACA
* * ** * *
36562842 CATGTGTAGTACTATGTGTAGGCTACTATGTGT-TTAAGATGGTTTTAGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAA-AT--TATT-GGTCG
* * * * * *
36562894 CGTGTGTAATACTAAGTGCAGGTTACTACGTGTATCAGA-TAGTTAGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAATTA-TT-GGTCG
* ** * * *
36562944 CATGTGTAGTACAAAGTGCAGGCTACTATGCATACCCGACAATT-TCGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CC-A-AATTATTGGTCG
* *
36562995 CGTGTGTAGTACTAAGTGCAGGCTACTAGGTGTACCAAATTATTGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAATTATTGGTCG
36563044 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTAC
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTAC
36563079 TAGATAGCGT
Statistics
Matches: 146, Mismatches: 32, Indels: 17
0.75 0.16 0.09
Matches are distributed among these distances:
48 4 0.03
49 39 0.27
50 36 0.25
51 33 0.23
52 30 0.21
53 3 0.02
54 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (49 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAATTATTGGTCG
Found at i:36563073 original size:100 final size:101
Alignment explanation
Indices: 36562891--36563073 Score: 289
Period size: 101 Copynumber: 1.8 Consensus size: 101
36562881 TGGTTTTAGG
* * *
36562891 TCACGTGTGTAATACTAAGTGCAGGTTACTACGTGTATCAGATAGTTAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAATACTAAGTGCAGGCTACTACGTGTACCAAATAGTTAGGTCGCATGTGTAGTAC
36562956 AAAGTGCAGGCTACTATGCATACCCGACAATTTCGA
66 AAAGTGCAGGCTACTATGCATACCCGACAATTTCGA
* *
36562992 TCACGTGTGTAGTACTAAGTGCAGGCTACTAGGTGTACCAAATTA-TT-GGTCGCATGTGTAGTA
1 TCACGTGTGTAATACTAAGTGCAGGCTACTACGTGTACCAAA-TAGTTAGGTCGCATGTGTAGTA
*
36563055 CTAAGTGCAGGCTACTATG
65 CAAAGTGCAGGCTACTATG
36563074 TGTACTAGAT
Statistics
Matches: 75, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
100 34 0.45
101 39 0.52
102 2 0.03
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (101 bp):
TCACGTGTGTAATACTAAGTGCAGGCTACTACGTGTACCAAATAGTTAGGTCGCATGTGTAGTAC
AAAGTGCAGGCTACTATGCATACCCGACAATTTCGA
Found at i:36563304 original size:16 final size:15
Alignment explanation
Indices: 36563283--36563312 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
36563273 GAATGGAGTA
36563283 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
36563299 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
36563313 TTAAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:36565522 original size:27 final size:27
Alignment explanation
Indices: 36565492--36565669 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
36565482 ATATTGAGTC
* * * *
36565492 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
36565519 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
36565546 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
36565574 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
36565601 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
36565628 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
36565655 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36565670 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:36565631 original size:82 final size:81
Alignment explanation
Indices: 36565513--36565668 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
36565503 TGCTATATAA
* *
36565513 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
36565578 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
36565595 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
36565659 CACTTAGTGC
65 CACTTAGTGC
36565669 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:36573465 original size:27 final size:27
Alignment explanation
Indices: 36573435--36573612 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
36573425 ATATTGAGTC
* * * *
36573435 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
36573462 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
36573489 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
36573517 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
36573544 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
36573571 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
36573598 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36573613 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:36573574 original size:82 final size:81
Alignment explanation
Indices: 36573456--36573611 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
36573446 TGCTATATAA
* *
36573456 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
36573521 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
36573538 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
36573602 CACTTAGTGC
65 CACTTAGTGC
36573612 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:36583507 original size:13 final size:13
Alignment explanation
Indices: 36583489--36583519 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
36583479 TAGACTTCCT
36583489 CACACGGGTAAGC
1 CACACGGGTAAGC
36583502 CACACGGGTAAGC
1 CACACGGGTAAGC
36583515 CACAC
1 CACAC
36583520 AGTTGTGTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.32, C:0.35, G:0.26, T:0.06
Consensus pattern (13 bp):
CACACGGGTAAGC
Found at i:36589457 original size:51 final size:49
Alignment explanation
Indices: 36589396--36589529 Score: 135
Period size: 49 Copynumber: 2.7 Consensus size: 49
36589386 GTTAGGTCGT
* * *
36589396 ATGTATAGTACTAAGTGCAGGCTACTATGTGTACCCGACAACTTCGATCAT
1 ATGTGTAGTACTAAGTGCAGGCTACTATGTGTACACGA-AACTT-GATCAC
* * * *** * *
36589447 GTGTGTAGTACTAAGTGTAGGCTACTACT-TGTACAGGATTGTTGGTCGC
1 ATGTGTAGTACTAAGTGCAGGCTACTA-TGTGTACACGAAACTTGATCAC
36589496 ATGTGTAGTACTAAGTGCAGGCTACTATGTGTAC
1 ATGTGTAGTACTAAGTGCAGGCTACTATGTGTAC
36589530 TAGATAACTT
Statistics
Matches: 68, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
48 1 0.01
49 33 0.49
50 2 0.03
51 31 0.46
52 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.32
Consensus pattern (49 bp):
ATGTGTAGTACTAAGTGCAGGCTACTATGTGTACACGAAACTTGATCAC
Found at i:36589755 original size:16 final size:15
Alignment explanation
Indices: 36589734--36589763 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
36589724 GAATGGAGTA
36589734 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
36589750 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
36589764 TAAAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:36592770 original size:27 final size:27
Alignment explanation
Indices: 36592735--36592873 Score: 165
Period size: 27 Copynumber: 5.1 Consensus size: 27
36592725 AGCGAGGCTG
*
36592735 CCAGGACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCA
36592762 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCA
* *
36592789 CCAGATCAGATA-ATTGTGGCATAGCCA
1 CCAGAACAGATATA-TGTGGCAGAGCCA
* * *
36592816 CCAGGACAGATATATGTGGTAGAACCA
1 CCAGAACAGATATATGTGGCAGAGCCA
* * *
36592843 CCAGATCAGATA-ATTATGGCATAGCCA
1 CCAGAACAGATATA-TGTGGCAGAGCCA
36592870 CCAG
1 CCAG
36592874 GATGCTTCCT
Statistics
Matches: 95, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
26 2 0.02
27 92 0.97
28 1 0.01
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAACAGATATATGTGGCAGAGCCA
Found at i:36592874 original size:54 final size:54
Alignment explanation
Indices: 36592751--36592875 Score: 205
Period size: 54 Copynumber: 2.3 Consensus size: 54
36592741 CAGATATATG
* * * *
36592751 TGGCAGAGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTG
1 TGGCATAGCCACCAGGACAGATATATGTGGCAGAACCACCAGATCAGATAATTA
*
36592805 TGGCATAGCCACCAGGACAGATATATGTGGTAGAACCACCAGATCAGATAATTA
1 TGGCATAGCCACCAGGACAGATATATGTGGCAGAACCACCAGATCAGATAATTA
36592859 TGGCATAGCCACCAGGA
1 TGGCATAGCCACCAGGA
36592876 TGCTTCCTCC
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 66 1.00
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.18
Consensus pattern (54 bp):
TGGCATAGCCACCAGGACAGATATATGTGGCAGAACCACCAGATCAGATAATTA
Found at i:36594503 original size:26 final size:26
Alignment explanation
Indices: 36594472--36594579 Score: 173
Period size: 26 Copynumber: 4.2 Consensus size: 26
36594462 TGAAATGCCC
36594472 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
36594498 ATCATGGAACATTTACCT-AACTCATT
1 ATCATGGAACATTTACCTAAAC-CATT
* *
36594524 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
36594550 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
36594576 ATCA
1 ATCA
36594580 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
25 3 0.04
26 71 0.93
27 2 0.03
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:36598400 original size:10 final size:10
Alignment explanation
Indices: 36598373--36598402 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
36598363 ACAGACAGAT
36598373 AATTTAGAAA
1 AATTTAGAAA
36598383 ATATTTAGAAA
1 A-ATTTAGAAA
36598394 AATTTAGAA
1 AATTTAGAA
36598403 TACTTACAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.57, C:0.00, G:0.10, T:0.33
Consensus pattern (10 bp):
AATTTAGAAA
Found at i:36599541 original size:27 final size:26
Alignment explanation
Indices: 36599499--36599629 Score: 106
Period size: 27 Copynumber: 4.9 Consensus size: 26
36599489 CACGAGATAC
*
36599499 AGATAT-TGTGGTAGAGCCACCAGAAT
1 AGATATATGTGGCAGAGCCACCAG-AT
* *
36599525 AGATATACGTGGCAGAGCAACCAGAT
1 AGATATATGTGGCAGAGCCACCAGAT
* *
36599551 CAGATA-ATTGTGGCATAGCCACCAGGAC
1 -AGATATA-TGTGGCAGAGCCACCA-GAT
* *
36599579 AGATATATGTGGCAAAGCCACTAGAT
1 AGATATATGTGGCAGAGCCACCAGAT
**
36599605 CAGATA-ATTGTGGCCTAGCCACCAG
1 -AGATATA-TGTGGCAGAGCCACCAG
36599630 GACGCTTCCT
Statistics
Matches: 85, Mismatches: 13, Indels: 13
0.77 0.12 0.12
Matches are distributed among these distances:
26 12 0.14
27 70 0.82
28 3 0.04
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (26 bp):
AGATATATGTGGCAGAGCCACCAGAT
Found at i:36599630 original size:54 final size:54
Alignment explanation
Indices: 36599493--36599632 Score: 183
Period size: 54 Copynumber: 2.6 Consensus size: 54
36599483 CGAAGTCACG
* * * * *
36599493 AGATACAGAT-ATTGTGGTAGAGCCACCAGAATAGATATACGTGGCAGAGCAACC
1 AGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATACGTGGCAAAGCAACC
* * *
36599547 AGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAAAGCCACT
1 AGATCAGATAATTGTGGCATAGCCACCAGGACAGATATACGTGGCAAAGCAACC
*
36599601 AGATCAGATAATTGTGGCCTAGCCACCAGGAC
1 AGATCAGATAATTGTGGCATAGCCACCAGGAC
36599633 GCTTCCTCCA
Statistics
Matches: 76, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
53 5 0.07
54 71 0.93
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (54 bp):
AGATCAGATAATTGTGGCATAGCCACCAGGACAGATATACGTGGCAAAGCAACC
Found at i:36601258 original size:26 final size:26
Alignment explanation
Indices: 36601227--36601334 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
36601217 TGAAATGCCC
*
36601227 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
36601253 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
36601279 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
36601305 ATCATTGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
36601331 ATCA
1 ATCA
36601335 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:36602723 original size:26 final size:26
Alignment explanation
Indices: 36602687--36602795 Score: 182
Period size: 26 Copynumber: 4.2 Consensus size: 26
36602677 ATGAAATGCC
*
36602687 TATCATGGAACATTTACCTAAACCAT
1 TATCATGGAACATTTACCTAACCCAT
36602713 TATCATGGAACATTTACCTAACCCAT
1 TATCATGGAACATTTACCTAACCCAT
* *
36602739 TATCATGGAATATTTACCTAATCCAT
1 TATCATGGAACATTTACCTAACCCAT
*
36602765 TATCATAGAACATTTACCTAACCCAT
1 TATCATGGAACATTTACCTAACCCAT
36602791 TATCA
1 TATCA
36602796 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.33
Consensus pattern (26 bp):
TATCATGGAACATTTACCTAACCCAT
Found at i:36604178 original size:26 final size:26
Alignment explanation
Indices: 36604148--36604229 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
36604138 TGAAATGCCC
*
36604148 ATCATGGAACATTTATCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
36604174 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
36604200 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
36604226 ATCA
1 ATCA
36604230 ATTTGTACCA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.35, C:0.23, G:0.07, T:0.34
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:36605613 original size:26 final size:26
Alignment explanation
Indices: 36605582--36605689 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
36605572 TGAAATGCCC
*
36605582 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
36605608 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
36605634 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
36605660 ATCATAGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
36605686 ATCA
1 ATCA
36605690 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:36607072 original size:26 final size:26
Alignment explanation
Indices: 36607042--36607123 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
36607032 TGAAATGCCC
*
36607042 ATCATGGAACATTTATCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
36607068 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
36607094 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
36607120 ATCA
1 ATCA
36607124 ATTTGTACCA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.35, C:0.23, G:0.07, T:0.34
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:36608790 original size:27 final size:27
Alignment explanation
Indices: 36608760--36608937 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 27
36608750 ATATTGAGCC
* *
36608760 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
** *
36608787 CGCACACTTAGTGCTATGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
36608814 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** * *
36608842 CGCACACTTAGTGCCGCATGATCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
36608869 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
36608896 CGTACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
36608923 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36608938 GTACAATTTA
Statistics
Matches: 126, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
27 102 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:36608903 original size:82 final size:81
Alignment explanation
Indices: 36608780--36608936 Score: 217
Period size: 82 Copynumber: 1.9 Consensus size: 81
36608770 GTGCTATATA
* *
36608780 ATCAACTCGCACACTTAGTGCTATGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGC
1 ATCAACTCGCACACTTAGTGCTATATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGC
36608845 ACACTTAGTGCCGCATG
65 ACACTTAGTGCCGCATG
* * ** * *
36608862 ATCAATTCGCACACTTAGTGC-ATCATATTCATTTCGTACACTTAGTGCAACATAGTCGAATCGC
1 ATCAACTCGCACACTTAGTGCTAT-ATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGC
36608926 ACACTTAGTGC
65 ACACTTAGTGC
36608937 TGTACAATTT
Statistics
Matches: 66, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
81 17 0.26
82 49 0.74
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (81 bp):
ATCAACTCGCACACTTAGTGCTATATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
CACTTAGTGCCGCATG
Found at i:36611742 original size:26 final size:26
Alignment explanation
Indices: 36611711--36611818 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
36611701 TGAAATGCCC
*
36611711 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
36611737 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
36611763 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
36611789 ATCATAGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
36611815 ATCA
1 ATCA
36611819 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:36613202 original size:26 final size:26
Alignment explanation
Indices: 36613171--36613278 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
36613161 TGAAATTCCC
*
36613171 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
36613197 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
36613223 ATCATGAAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
36613249 ATCATCGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
36613275 ATCA
1 ATCA
36613279 ATTTGTACCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.37, C:0.25, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:36614661 original size:26 final size:26
Alignment explanation
Indices: 36614630--36614711 Score: 128
Period size: 26 Copynumber: 3.2 Consensus size: 26
36614620 TGAAATGCCC
*
36614630 ATCATGGAACATTTACCCAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
36614656 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
36614682 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
36614708 ATCA
1 ATCA
36614712 ATTTGTACCA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.37, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:36627491 original size:66 final size:66
Alignment explanation
Indices: 36627385--36627519 Score: 270
Period size: 66 Copynumber: 2.0 Consensus size: 66
36627375 AGAGTGTCAG
36627385 CTTGAGATTATGTAATCAAAGCAAAAGAGAATGTTGAATTGCCAGGGGTTATAACGGGTAAATTT
1 CTTGAGATTATGTAATCAAAGCAAAAGAGAATGTTGAATTGCCAGGGGTTATAACGGGTAAATTT
36627450 T
66 T
36627451 CTTGAGATTATGTAATCAAAGCAAAAGAGAATGTTGAATTGCCAGGGGTTATAACGGGTAAATTT
1 CTTGAGATTATGTAATCAAAGCAAAAGAGAATGTTGAATTGCCAGGGGTTATAACGGGTAAATTT
36627516 T
66 T
36627517 CTT
1 CTT
36627520 TTCTAGAAAT
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 69 1.00
ACGTcount: A:0.36, C:0.10, G:0.24, T:0.31
Consensus pattern (66 bp):
CTTGAGATTATGTAATCAAAGCAAAAGAGAATGTTGAATTGCCAGGGGTTATAACGGGTAAATTT
T
Found at i:36632878 original size:38 final size:38
Alignment explanation
Indices: 36632742--36632889 Score: 165
Period size: 38 Copynumber: 3.8 Consensus size: 38
36632732 TAAAGACATG
* *
36632742 TATTAAAGATGTCTAAACTAGGACACAATTAAAACAT-A
1 TATTAAAGATGTCTAAACTATGACATAATTAAAAC-TCA
* *
36632780 TATTTAAGATGTCCTAAACTATGACATAATTAAAATCTCT
1 TATTAAAGATGT-CTAAACTATGACATAATTAAAA-CTCA
* *
36632820 TATTAAAGATGT-TCAGATTATGACATAATTAAAACTCA
1 TATTAAAGATGTCT-AAACTATGACATAATTAAAACTCA
* * *
36632858 TATTAATGATGTTTAAATTATGACATAATTAA
1 TATTAAAGATGTCTAAACTATGACATAATTAA
36632890 TTACTTAAAC
Statistics
Matches: 95, Mismatches: 10, Indels: 10
0.83 0.09 0.09
Matches are distributed among these distances:
38 43 0.45
39 40 0.42
40 12 0.13
ACGTcount: A:0.45, C:0.11, G:0.09, T:0.35
Consensus pattern (38 bp):
TATTAAAGATGTCTAAACTATGACATAATTAAAACTCA
Found at i:36637284 original size:42 final size:41
Alignment explanation
Indices: 36637192--36637341 Score: 167
Period size: 42 Copynumber: 3.6 Consensus size: 41
36637182 CTAAAATTAT
* * *
36637192 GTGTAAGACCATATCTAGGATATGCATCTATATGAGACTTT
1 GTGTAAGACCATATCTAGGATATGCATCGATAAGAGACTTC
*
36637233 GTGTAAGACCATATCTGGGATATGACATCGATAAGAGACTTC
1 GTGTAAGACCATATCTAGGATATG-CATCGATAAGAGACTTC
* * * *
36637275 GTGTAAGACCATAGCTAGGCTATTGCCATCGATACGAGA-TCCC
1 GTGTAAGACCATATCTAGGATA-TG-CATCGATAAGAGACT-TC
* *
36637318 ATGTAAGACCATATCTGGGATATG
1 GTGTAAGACCATATCTAGGATATG
36637342 GCATTGGTAT
Statistics
Matches: 92, Mismatches: 14, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
41 23 0.25
42 36 0.39
43 33 0.36
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (41 bp):
GTGTAAGACCATATCTAGGATATGCATCGATAAGAGACTTC
Found at i:36639687 original size:37 final size:37
Alignment explanation
Indices: 36639624--36639732 Score: 155
Period size: 37 Copynumber: 2.9 Consensus size: 37
36639614 AGCTCAGGCG
* * *
36639624 AAATCTCCACACGAAGTTATCAGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
**
36639661 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGATT
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
36639698 TAATCTGCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
36639733 ATATATTTCC
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:36640015 original size:47 final size:47
Alignment explanation
Indices: 36639936--36640129 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
36639926 TATATATATT
* * * * *
36639936 TCACATTAGCCATTCGACTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
36639983 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
36640030 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
36640077 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
36640124 TCACAT
1 TCACAT
36640130 AAAAATCCTA
Statistics
Matches: 132, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 132 1.00
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:36640056 original size:22 final size:22
Alignment explanation
Indices: 36640029--36640100 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
36640019 GCTCACATTC
36640029 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
36640051 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
36640075 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
36640098 ATC
1 ATC
36640101 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:36653837 original size:16 final size:17
Alignment explanation
Indices: 36653807--36653839 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
36653797 TAAAAACTAG
36653807 AAAACAAAAACAAAAAT
1 AAAACAAAAACAAAAAT
*
36653824 AAAA-AAAAATAAAAAT
1 AAAACAAAAACAAAAAT
36653840 TATTATGTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.85, C:0.06, G:0.00, T:0.09
Consensus pattern (17 bp):
AAAACAAAAACAAAAAT
Found at i:36655196 original size:27 final size:27
Alignment explanation
Indices: 36655131--36655203 Score: 80
Period size: 27 Copynumber: 2.7 Consensus size: 27
36655121 TTTATATATG
36655131 TATATATATATTCTTTT-AAATCTATT
1 TATATATATATTCTTTTAAAATCTATT
*
36655157 TATATAATTTATTCTTTTAAAGATCCTATT
1 TATAT-ATATATTCTTTTAAA-AT-CTATT
*
36655187 T-TAT-TATATTTTTTTAA
1 TATATATATATTCTTTTAA
36655204 CACTTTCATA
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
26 5 0.12
27 22 0.55
28 2 0.05
29 5 0.12
30 6 0.15
ACGTcount: A:0.33, C:0.07, G:0.01, T:0.59
Consensus pattern (27 bp):
TATATATATATTCTTTTAAAATCTATT
Found at i:36668830 original size:25 final size:25
Alignment explanation
Indices: 36668786--36668834 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
36668776 TTATAATATG
* * *
36668786 AAAAATGACTATTTTGCCCCTAGGT
1 AAAAATGACCATTATACCCCTAGGT
36668811 AAAAATGACCATTATACCCCTAGG
1 AAAAATGACCATTATACCCCTAGG
36668835 GTTTAATTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.27
Consensus pattern (25 bp):
AAAAATGACCATTATACCCCTAGGT
Found at i:36668898 original size:21 final size:20
Alignment explanation
Indices: 36668874--36668950 Score: 73
Period size: 21 Copynumber: 3.7 Consensus size: 20
36668864 TTGTTATTAT
*
36668874 ACATTATATGACATGATATGC
1 ACATGATATG-CATGATATGC
**
36668895 ACATGATATGTTTTGATATGC
1 ACATGATATG-CATGATATGC
*
36668916 ACATGATATGCCATGATATAC
1 ACATGATATG-CATGATATGC
* *
36668937 TCATTATATGCATG
1 ACATGATATGCATG
36668951 GGTTGGGTTT
Statistics
Matches: 46, Mismatches: 10, Indels: 1
0.81 0.18 0.02
Matches are distributed among these distances:
20 4 0.09
21 42 0.91
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36
Consensus pattern (20 bp):
ACATGATATGCATGATATGC
Found at i:36668900 original size:11 final size:11
Alignment explanation
Indices: 36668874--36668948 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
36668864 TTGTTATTAT
*
36668874 ACATTATATG-
1 ACATGATATGC
36668884 ACATGATATGC
1 ACATGATATGC
36668895 ACATGATATG-
1 ACATGATATGC
***
36668905 TTTTGATATGC
1 ACATGATATGC
36668916 ACATGATATGC
1 ACATGATATGC
*
36668927 -CATGATATAC
1 ACATGATATGC
* *
36668937 TCATTATATGC
1 ACATGATATGC
36668948 A
1 A
36668949 TGGGTTGGGT
Statistics
Matches: 51, Mismatches: 11, Indels: 5
0.76 0.16 0.07
Matches are distributed among these distances:
10 25 0.49
11 26 0.51
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.36
Consensus pattern (11 bp):
ACATGATATGC
Found at i:36668930 original size:10 final size:10
Alignment explanation
Indices: 36668879--36668934 Score: 58
Period size: 10 Copynumber: 5.4 Consensus size: 10
36668869 ATTATACATT
*
36668879 ATATGACATG
1 ATATGCCATG
36668889 ATATGCACATG
1 ATATGC-CATG
***
36668900 ATATGTTTTG
1 ATATGCCATG
36668910 ATATGCACATG
1 ATATGC-CATG
36668921 ATATGCCATG
1 ATATGCCATG
36668931 ATAT
1 ATAT
36668935 ACTCATTATA
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
10 20 0.54
11 17 0.46
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.36
Consensus pattern (10 bp):
ATATGCCATG
Found at i:36669056 original size:25 final size:25
Alignment explanation
Indices: 36668981--36669049 Score: 93
Period size: 25 Copynumber: 2.8 Consensus size: 25
36668971 AGGAAGTGCT
* ***
36668981 AAAGGGCTTTGCCCTAGTTTACCGA
1 AAAGGGCTTTGCCCCAGTTTATTAA
*
36669006 AAAGGGCTTTGTCCCAGTTTATTAA
1 AAAGGGCTTTGCCCCAGTTTATTAA
36669031 AAAGGGCTTTGCCCCAGTT
1 AAAGGGCTTTGCCCCAGTT
36669050 ATTTAAAGAG
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (25 bp):
AAAGGGCTTTGCCCCAGTTTATTAA
Found at i:36669062 original size:24 final size:25
Alignment explanation
Indices: 36669006--36669078 Score: 71
Period size: 25 Copynumber: 3.0 Consensus size: 25
36668996 AGTTTACCGA
*
36669006 AAAG-GGCTTTGTCCCAGTT-TATT
1 AAAGAGGCTTTGCCCCAGTTATATT
*
36669029 AAAAAGGGCTTTGCCCCAGTTAT-TT
1 AAAGA-GGCTTTGCCCCAGTTATATT
**
36669054 AAAGAGGCTAGGCCTCCAGTTATAT
1 AAAGAGGCTTTGCC-CCAGTTATAT
36669079 GGTAAAGCAG
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
23 3 0.08
24 7 0.17
25 28 0.70
26 2 0.05
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (25 bp):
AAAGAGGCTTTGCCCCAGTTATATT
Found at i:36670128 original size:26 final size:26
Alignment explanation
Indices: 36670094--36670146 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36670084 GCAAATATTC
36670094 TTTTATTCTTTCCATACAAGTAATTA
1 TTTTATTCTTTCCATACAAGTAATTA
* *
36670120 TTTTATTCTTTCCGTATAAGTAATTA
1 TTTTATTCTTTCCATACAAGTAATTA
36670146 T
1 T
36670147 CTTGGTGCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.13, G:0.06, T:0.53
Consensus pattern (26 bp):
TTTTATTCTTTCCATACAAGTAATTA
Found at i:36678592 original size:44 final size:44
Alignment explanation
Indices: 36678529--36678643 Score: 194
Period size: 44 Copynumber: 2.6 Consensus size: 44
36678519 TGACATAGGG
36678529 TTCTGATATGTGTTTACGAGTAAGACCATGGCATCGATATATGA
1 TTCTGATATGTGTTTACGAGTAAGACCATGGCATCGATATATGA
* * *
36678573 TTCTGACATGTGTTTACGAGTAAGACCATGGCATCGTTATGTGA
1 TTCTGATATGTGTTTACGAGTAAGACCATGGCATCGATATATGA
*
36678617 TTCCGATATGTGTTTACGAGTAAGACC
1 TTCTGATATGTGTTTACGAGTAAGACC
36678644 TTGTCTGGGA
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 66 1.00
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (44 bp):
TTCTGATATGTGTTTACGAGTAAGACCATGGCATCGATATATGA
Found at i:36678671 original size:56 final size:56
Alignment explanation
Indices: 36678601--36678727 Score: 193
Period size: 56 Copynumber: 2.3 Consensus size: 56
36678591 AGTAAGACCA
*
36678601 TGGCATCGTTATGTGATTCCGATATGTGTTTACGAGTAAGAC-CTTGTCTGGGACAG
1 TGGCATCGATATGTGATTCCGATATGTGTTTACGAGTAAGACTC-TGTCTGGGACAG
* * *
36678657 TGGTATCGATATGTGATTCCGATATGTGTTTACGAGTAAGACTCTGTTTGGGATAG
1 TGGCATCGATATGTGATTCCGATATGTGTTTACGAGTAAGACTCTGTCTGGGACAG
*
36678713 TGGCATCTATATGTG
1 TGGCATCGATATGTG
36678728 GTTACATGTA
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
56 63 0.98
57 1 0.02
ACGTcount: A:0.22, C:0.13, G:0.28, T:0.36
Consensus pattern (56 bp):
TGGCATCGATATGTGATTCCGATATGTGTTTACGAGTAAGACTCTGTCTGGGACAG
Found at i:36681806 original size:40 final size:40
Alignment explanation
Indices: 36681735--36681918 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
36681725 GCTCCTCGTT
36681735 CAAATGCCTTC-GGACTTAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAATTCGCA
* *
36681774 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAATTCGCA
*
36681814 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAAT-TCGCA
* * * * *
36681853 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AATTCGCA
36681894 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
36681919 CAGCATTCAA
Statistics
Matches: 125, Mismatches: 12, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
38 3 0.02
39 42 0.34
40 66 0.53
41 13 0.10
42 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAATTCGCA
Found at i:36681832 original size:79 final size:80
Alignment explanation
Indices: 36681735--36681918 Score: 225
Period size: 79 Copynumber: 2.3 Consensus size: 80
36681725 GCTCCTCGTT
* *
36681735 CAAATGCCTTCGGACTTAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGCTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAACCC
* *
36681797 GGATTTAGTAAC-TCGCA
63 GGATATAGTAACTTAGCA
**
36681814 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
36681879 TATGGTCACTTAGCA
66 TATAGTAACTTAGCA
36681894 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
36681919 CAGCATTCAA
Statistics
Matches: 92, Mismatches: 8, Indels: 9
0.84 0.07 0.08
Matches are distributed among these distances:
78 5 0.05
79 67 0.73
80 20 0.22
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCA
Found at i:36689588 original size:39 final size:40
Alignment explanation
Indices: 36689431--36689655 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
36689421 GCTCCTCGTT
* * *
36689431 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
36689471 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
36689511 CAAATACCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
36689551 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
36689590 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
36689631 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
36689656 CATCATTCAA
Statistics
Matches: 162, Mismatches: 18, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
38 2 0.01
39 32 0.20
40 115 0.71
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:36689615 original size:119 final size:120
Alignment explanation
Indices: 36689433--36689655 Score: 283
Period size: 119 Copynumber: 1.9 Consensus size: 120
36689423 TCCTCGTTCA
*
36689433 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGGAT
* *
36689498 TTAGTAAC-TCGCACAAATACCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-ACCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * * **
36689553 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCACACAAATGCCTTCGGGA-CTTAACCCGG
* * * *
36689615 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAACCTTCGGGACTTAACCCGGA
36689656 CATCATTCAA
Statistics
Matches: 88, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
118 4 0.05
119 64 0.73
120 20 0.23
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAACCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:36696539 original size:22 final size:21
Alignment explanation
Indices: 36696514--36696562 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 21
36696504 TTTGTACTTA
36696514 AATTATTAACATAATAAATTTT
1 AATTATT-ACATAATAAATTTT
**
36696536 AATTAATTTTATAATAAATTTT
1 AATT-ATTACATAATAAATTTT
*
36696558 GATTA
1 AATTA
36696563 ATTTTGGTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
21 1 0.04
22 19 0.83
23 3 0.13
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (21 bp):
AATTATTACATAATAAATTTT
Done.