Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 116 of 316
Found at i:36696563 original size:22 final size:22
Alignment explanation
Indices: 36696524--36696567 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
36696514 AATTATTAAC
36696524 ATAATAAATTTTAATTAATTTT
1 ATAATAAATTTTAATTAATTTT
*
36696546 ATAATAAATTTTGATTAATTTT
1 ATAATAAATTTTAATTAATTTT
36696568 GGTCATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (22 bp):
ATAATAAATTTTAATTAATTTT
Found at i:36710510 original size:158 final size:158
Alignment explanation
Indices: 36710222--36710530 Score: 618
Period size: 158 Copynumber: 2.0 Consensus size: 158
36710212 ATTAAGCCCC
36710222 TAATTCAATTTCTGCAATTTATAGTGAATTTCCAAAGTTGCACCACTGTAGTAACCCAAAACTGC
1 TAATTCAATTTCTGCAATTTATAGTGAATTTCCAAAGTTGCACCACTGTAGTAACCCAAAACTGC
36710287 CAAGGCTAAATTTACTCATTCATTACTATTATTCACCAAATCCATACAATATCATTTCATTCATA
66 CAAGGCTAAATTTACTCATTCATTACTATTATTCACCAAATCCATACAATATCATTTCATTCATA
36710352 ATGGTAAGAACACATAATTATTCTTATG
131 ATGGTAAGAACACATAATTATTCTTATG
36710380 TAATTCAATTTCTGCAATTTATAGTGAATTTCCAAAGTTGCACCACTGTAGTAACCCAAAACTGC
1 TAATTCAATTTCTGCAATTTATAGTGAATTTCCAAAGTTGCACCACTGTAGTAACCCAAAACTGC
36710445 CAAGGCTAAATTTACTCATTCATTACTATTATTCACCAAATCCATACAATATCATTTCATTCATA
66 CAAGGCTAAATTTACTCATTCATTACTATTATTCACCAAATCCATACAATATCATTTCATTCATA
36710510 ATGGTAAGAACACATAATTAT
131 ATGGTAAGAACACATAATTAT
36710531 GCTTCATAAG
Statistics
Matches: 151, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
158 151 1.00
ACGTcount: A:0.37, C:0.20, G:0.09, T:0.34
Consensus pattern (158 bp):
TAATTCAATTTCTGCAATTTATAGTGAATTTCCAAAGTTGCACCACTGTAGTAACCCAAAACTGC
CAAGGCTAAATTTACTCATTCATTACTATTATTCACCAAATCCATACAATATCATTTCATTCATA
ATGGTAAGAACACATAATTATTCTTATG
Found at i:36716183 original size:37 final size:37
Alignment explanation
Indices: 36716133--36716207 Score: 107
Period size: 37 Copynumber: 2.0 Consensus size: 37
36716123 TTATTACGAA
* *
36716133 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAAGTC-CCACACGAAGTCATCGG
*
36716170 GTCTTACCCGGACAAAAGTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAAGTCCCACACGAAGTCATCGG
36716207 G
1 G
36716208 CCTTTAGAGC
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 32 0.94
38 2 0.06
ACGTcount: A:0.27, C:0.31, G:0.21, T:0.21
Consensus pattern (37 bp):
GTCTTACCCGGACAAAAGTCCCACACGAAGTCATCGG
Found at i:36716408 original size:47 final size:47
Alignment explanation
Indices: 36716330--36716724 Score: 637
Period size: 47 Copynumber: 8.4 Consensus size: 47
36716320 CCCTTCGGGA
* * * * * * *
36716330 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36716377 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36716424 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36716471 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
36716518 CTTATCACACATATGCACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36716565 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36716612 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36716659 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36716706 CTTATCACATATATACACT
1 CTTATCACATATATACACT
36716725 GTGTTGGCTG
Statistics
Matches: 325, Mismatches: 23, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 325 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36731534 original size:34 final size:32
Alignment explanation
Indices: 36731454--36731534 Score: 85
Period size: 34 Copynumber: 2.4 Consensus size: 32
36731444 TTTGCTTGCA
36731454 TACTGTACTGAAATGGTCTAAGGCCTAGATTG
1 TACTGTACTGAAATGGTCTAAGGCCTAGATTG
*
36731486 TCACTGCTATTGAAATAGG-CTAAGGCCTAG-TCTG
1 T-ACTG-TACTGAAAT-GGTCTAAGGCCTAGAT-TG
36731520 CTACTGTTACTGAAA
1 -TACTG-TACTGAAA
36731535 AAGGGGCTAA
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
32 1 0.02
33 5 0.12
34 32 0.78
35 3 0.07
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (32 bp):
TACTGTACTGAAATGGTCTAAGGCCTAGATTG
Found at i:36741821 original size:18 final size:17
Alignment explanation
Indices: 36741794--36741827 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
36741784 TTCATGCATG
36741794 TTTTTTTTATTTATTTA
1 TTTTTTTTATTTATTTA
36741811 TTTTATTTTATTTATTT
1 TTTT-TTTTATTTATTT
36741828 GTTAGCTCGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (17 bp):
TTTTTTTTATTTATTTA
Found at i:36743070 original size:40 final size:40
Alignment explanation
Indices: 36742975--36743188 Score: 242
Period size: 40 Copynumber: 5.4 Consensus size: 40
36742965 ATGATAACCA
*
36742975 GGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGT-TCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TATCCG
* * * *
36743016 GGCTAAGTCCCGAAGGCATTTGTGCAAGTTATTACATCTG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
*
36743056 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATACCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
*
36743096 GGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCC-
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
* * *
36743135 GGCTATGTCCCGAAAGCA-TTGAGCGAG-TAGCTATATCC-
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCG
* *
36743173 GGTTAAATCCCGAAGG
1 GGCTAAGTCCCGAAGG
36743189 TACTTGGCTT
Statistics
Matches: 150, Mismatches: 20, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
37 2 0.01
38 27 0.18
39 16 0.11
40 81 0.54
41 21 0.14
42 3 0.02
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
Found at i:36753417 original size:42 final size:42
Alignment explanation
Indices: 36753370--36753519 Score: 153
Period size: 42 Copynumber: 3.5 Consensus size: 42
36753360 TAAAACTATG
** **
36753370 TGTAAGACCATATCTGGGATATGGCATTTATGTGAGACTTCT
1 TGTAAGACCATATCTGGGATATGGCATCGATAAGAGACTTCT
* * *
36753412 TGTAAGAGCATATTTGGGATATGGAATCGATAAGAGACTT-T
1 TGTAAGACCATATCTGGGATATGGCATCGATAAGAGACTTCT
* * *
36753453 GTGTAAGACCATAACTGGGACTATTGGCATCGATACGAGA-TCTCA
1 -TGTAAGACCATATCTGGGA-TA-TGGCATCGATAAGAGACT-TCT
36753498 T-TAAGACCATATCTGGGATATG
1 TGTAAGACCATATCTGGGATATG
36753520 AGATTGGTAT
Statistics
Matches: 89, Mismatches: 14, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
41 3 0.03
42 51 0.57
43 19 0.21
44 16 0.18
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATAAGAGACTTCT
Found at i:36754670 original size:16 final size:16
Alignment explanation
Indices: 36754649--36754680 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
36754639 TGACCAAATG
*
36754649 GCCTGCCCACATAGGA
1 GCCTGCCCACACAGGA
36754665 GCCTGCCCACACAGGA
1 GCCTGCCCACACAGGA
36754681 ATGTCCCAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.41, G:0.25, T:0.09
Consensus pattern (16 bp):
GCCTGCCCACACAGGA
Found at i:36755308 original size:48 final size:47
Alignment explanation
Indices: 36755256--36755393 Score: 161
Period size: 48 Copynumber: 2.9 Consensus size: 47
36755246 GACATGTCAT
* *
36755256 TACGAGCTTTATTGATTTTGCTTCGCGCCATGATATTAGCACTT-TGGG
1 TACGAGCTTCATTGATTTGGCTTCG-GCCATGATATTAGCACTTCT-GG
*
36755304 TACGATCTTCATTGATTTGGCTTCAGGCCATGATATTAGCACTTCTGG
1 TACGAGCTTCATTGATTTGGCTTC-GGCCATGATATTAGCACTTCTGG
* * * * *
36755352 TGCGAGCTTCATTGGTTTGGCGTCGAGCCGTGATATTGGCAC
1 TACGAGCTTCATTGATTTGGCTTCG-GCCATGATATTAGCAC
36755394 CTAGAGTGCG
Statistics
Matches: 78, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
47 1 0.01
48 75 0.96
49 2 0.03
ACGTcount: A:0.18, C:0.20, G:0.25, T:0.36
Consensus pattern (47 bp):
TACGAGCTTCATTGATTTGGCTTCGGCCATGATATTAGCACTTCTGG
Found at i:36760965 original size:39 final size:38
Alignment explanation
Indices: 36760884--36760983 Score: 94
Period size: 39 Copynumber: 2.6 Consensus size: 38
36760874 ATGTCTGAAC
* * *
36760884 TAAAGACATGTATTAAAGATGTCTTAACTAGGACACATT
1 TAAA-ACATATATTAAAGATGTCTAAACTAGGACACAAT
* * *
36760923 TAAAACATATATTTAAGATGTCCTAAACTATGACATAAT
1 TAAAACATATATTAAAGATGT-CTAAACTAGGACACAAT
*
36760962 TAAAATCCCT-TATTAAAGATGT
1 TAAAA--CATATATTAAAGATGT
36760984 TCGAATTATG
Statistics
Matches: 50, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
38 15 0.30
39 22 0.44
40 11 0.22
41 2 0.04
ACGTcount: A:0.43, C:0.13, G:0.11, T:0.33
Consensus pattern (38 bp):
TAAAACATATATTAAAGATGTCTAAACTAGGACACAAT
Found at i:36761029 original size:38 final size:39
Alignment explanation
Indices: 36760931--36761041 Score: 100
Period size: 38 Copynumber: 2.8 Consensus size: 39
36760921 TTTAAAACAT
* * * *
36760931 ATATTTAAGATGTCCTAAACTATGACATAATTAAAATCCC
1 ATATTAAAGATGT-TTAAATTATGAAATAATTAAAATCCC
* ** *
36760971 TTATTAAAGATGTTCGAATTATGAAATAATTAAAA-CTC
1 ATATTAAAGATGTTTAAATTATGAAATAATTAAAATCCC
**
36761009 ATATTAATA-ATGTTTAAATTATGATGTAATTAA
1 ATATTAA-AGATGTTTAAATTATGAAATAATTAA
36761042 TGACTTAAAC
Statistics
Matches: 57, Mismatches: 13, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
38 28 0.49
39 18 0.32
40 11 0.19
ACGTcount: A:0.44, C:0.09, G:0.09, T:0.38
Consensus pattern (39 bp):
ATATTAAAGATGTTTAAATTATGAAATAATTAAAATCCC
Found at i:36765414 original size:24 final size:24
Alignment explanation
Indices: 36765387--36765471 Score: 125
Period size: 24 Copynumber: 3.5 Consensus size: 24
36765377 AAGGCTGTCA
*
36765387 GGAGAAGATTTAGGAGCTGATTAG
1 GGAGAAGATTTAGGAGCTGATAAG
*
36765411 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* * *
36765435 GGAGAGGATTTAGGAGTTGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
36765459 GGAGAAGATTTAG
1 GGAGAAGATTTAG
36765472 AAGATGATCA
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 56 1.00
ACGTcount: A:0.35, C:0.02, G:0.39, T:0.24
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:36765479 original size:24 final size:24
Alignment explanation
Indices: 36765386--36765486 Score: 121
Period size: 24 Copynumber: 4.2 Consensus size: 24
36765376 AAAGGCTGTC
*
36765386 AGGAGAAGATTTAGGAGCTGATTA
1 AGGAGAAGATTTAGGAGCTGATAA
* *
36765410 GGGAGAGGATTTAGGAGCTGATAA
1 AGGAGAAGATTTAGGAGCTGATAA
* * *
36765434 GGGAGAGGATTTAGGAGTTGATAA
1 AGGAGAAGATTTAGGAGCTGATAA
* * *
36765458 AGGAGAAGATTTAGAAGATGATCA
1 AGGAGAAGATTTAGGAGCTGATAA
36765482 AGGAG
1 AGGAG
36765487 CAGGAGTTGG
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 68 1.00
ACGTcount: A:0.38, C:0.03, G:0.38, T:0.22
Consensus pattern (24 bp):
AGGAGAAGATTTAGGAGCTGATAA
Found at i:36776770 original size:104 final size:104
Alignment explanation
Indices: 36776590--36776797 Score: 380
Period size: 104 Copynumber: 2.0 Consensus size: 104
36776580 GACTGCTTGA
* *
36776590 TGCAAGGAAGTGTTTAATTTTGCTGCTCTTGCCATGTGGGTATAAGAAGTCGACCGAAACGCTGC
1 TGCAAGGAAGTGTTTAATTTTGCTGCTCTTGCCATGTGGGTATAAGAAATCGACCGAAACACTGC
36776655 TAAGTGGAGTGAAGTTTGAATTGGTGATGGAGGGATTTT
66 TAAGTGGAGTGAAGTTTGAATTGGTGATGGAGGGATTTT
* *
36776694 TGCAAGGAAGTGTTTAATTTTGTTGCTCTTGCCGTGTGGGTATAAGAAATCGACCGAAACACTGC
1 TGCAAGGAAGTGTTTAATTTTGCTGCTCTTGCCATGTGGGTATAAGAAATCGACCGAAACACTGC
36776759 TAAGTGGAGTGAAGTTTGAATTGGTGATGGAGGGATTTT
66 TAAGTGGAGTGAAGTTTGAATTGGTGATGGAGGGATTTT
36776798 ATGAGGGAAT
Statistics
Matches: 100, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
104 100 1.00
ACGTcount: A:0.25, C:0.11, G:0.31, T:0.32
Consensus pattern (104 bp):
TGCAAGGAAGTGTTTAATTTTGCTGCTCTTGCCATGTGGGTATAAGAAATCGACCGAAACACTGC
TAAGTGGAGTGAAGTTTGAATTGGTGATGGAGGGATTTT
Found at i:36786097 original size:46 final size:46
Alignment explanation
Indices: 36786045--36786400 Score: 316
Period size: 46 Copynumber: 7.7 Consensus size: 46
36786035 TTGGCATCCA
* * *
36786045 AACTCGTTGAGTTGAGTCTAAGTTCACTTATGGATGCGAACATCTG
1 AACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCCG
36786091 AACTCGTTGAGTTGAGT-TCGAGTTCACTTATGGATGCGAACGTCCG
1 AACTCGTTGAGTTGAGTCT-GAGTTCACTTATGGATGCGAACGTCCG
* * * * *
36786137 AACTCGTTGAGTTGAGTCCGAGTTCA-TGAAATGTAACTG-G--CATCCA
1 AACTCGTTGAGTTGAGTCTGAGTTCACT--TATG-GA-TGCGAACGTCCG
* * * * * *
36786183 AACTCATTGAGTCGAGTCCGAATTCACTTATGGATGCGAA-GGCCT
1 AACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCCG
*
36786228 AAGCTCATTGAGTTGAGT-TCGAGTTCACTTATGGATGCGAACGTCCG
1 AA-CTCGTTGAGTTGAGTCT-GAGTTCACTTATGGATGCGAACGTCCG
* * * * * * *
36786275 AACTCGTTGAGTTGAGTCCGAGTTCA-TGAAATGTA-ACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCTGAGTTCACT--TATGGATGCGA-ACGTCCG
* * *
36786322 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCG
1 AACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCCG
* *
36786368 AGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 AACTCGTTGAGTTGAGTCTGAGTTCACTTATGG
36786401 GCGGGTTACA
Statistics
Matches: 251, Mismatches: 40, Indels: 38
0.76 0.12 0.12
Matches are distributed among these distances:
43 2 0.01
44 2 0.01
45 10 0.04
46 186 0.74
47 46 0.18
48 3 0.01
49 2 0.01
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCCG
Found at i:36786153 original size:92 final size:92
Alignment explanation
Indices: 36786045--36786400 Score: 348
Period size: 92 Copynumber: 3.9 Consensus size: 92
36786035 TTGGCATCCA
** * *
36786045 AACTCGTTGAGTTGAGTCTAAGTTCACTTATGGATGCGAACATCTGAACTCGTTGAGTTGAGTTC
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCCGAACTCGTTGAGTTGAGTCC
36786110 GAGTTCACTTATGGATGCGAACGTCCG
66 GAGTTCACTTATGGATGCGAACGTCCG
* * * * *
36786137 AACTCGTTGAGTTGAGTCCGAGTTCA-TGAAATGTAACTG-G--CATCCAAACTCATTGAGTCGA
1 AACTCGTTGAGTTGAGTCCGAGTTCACT--TATG-GA-TGCGAACATCCGAACTCGTTGAGTTGA
* * *
36786198 GTCCGAATTCACTTATGGATGCGAA-GGCCT
62 GTCCGAGTTCACTTATGGATGCGAACGTCCG
* * *
36786228 AAGCTCATTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGAGTC
1 AA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCCGAACTCGTTGAGTTGAGTC
* * * * * *
36786293 CGAGTTCA-TGAAATGTA-ACTAGGCATCCG
65 CGAGTTCACT--TATGGATGCGA-ACGTCCG
*** * *
36786322 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGTTGAGTCT
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCCGAACTCGTTGAGTTGAGTCC
*
36786387 GAGTTCGCTTATGG
66 GAGTTCACTTATGG
36786401 GCGGGTTACA
Statistics
Matches: 212, Mismatches: 38, Indels: 28
0.76 0.14 0.10
Matches are distributed among these distances:
89 2 0.01
90 2 0.01
91 10 0.05
92 118 0.56
93 71 0.33
94 7 0.03
95 2 0.01
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (92 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCCGAACTCGTTGAGTTGAGTCC
GAGTTCACTTATGGATGCGAACGTCCG
Found at i:36786239 original size:138 final size:138
Alignment explanation
Indices: 36786036--36786400 Score: 556
Period size: 138 Copynumber: 2.6 Consensus size: 138
36786026 TCAAATATTT
* **
36786036 TGGCATCCAAACTCGTTGAGTTGAGT-CTAAGTTCACTTATGGATGCGAACATCTGAA-CTCGTT
1 TGGCATCCAAACTCGTTGAGTTGAGTCCGAA-TTCACTTATGGATGCGAACGCCT-AAGCTCGTT
36786099 GAGTTGAGTTCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGAGTCCGAGTTCAT
64 GAGTTGAGTTCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGAGTCCGAGTTCAT
36786164 GAAATGTAAC
129 GAAATGTAAC
* * * *
36786174 TGGCATCCAAACTCATTGAGTCGAGTCCGAATTCACTTATGGATGCGAAGGCCTAAGCTCATTGA
1 TGGCATCCAAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCGAACGCCTAAGCTCGTTGA
36786239 GTTGAGTTCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGAGTCCGAGTTCATGA
66 GTTGAGTTCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGAGTCCGAGTTCATGA
36786304 AATGTAAC
131 AATGTAAC
* * * **
36786312 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTG
1 T-GGCATCCAAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCGAACGCCTAAGCTCGTTG
*
36786377 AGTTGAG-TCTGAGTTCGCTTATGG
65 AGTTGAGTTC-GAGTTCACTTATGG
36786401 GCGGGTTACA
Statistics
Matches: 207, Mismatches: 16, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
137 2 0.01
138 127 0.61
139 78 0.38
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.30
Consensus pattern (138 bp):
TGGCATCCAAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCGAACGCCTAAGCTCGTTGA
GTTGAGTTCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGAGTCCGAGTTCATGA
AATGTAAC
Found at i:36791484 original size:22 final size:22
Alignment explanation
Indices: 36791456--36791577 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
36791446 TTCCACATCC
36791456 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
36791478 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
36791502 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
36791525 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
36791549 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
36791572 ATCACA
1 ATCACA
36791578 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:36791491 original size:47 final size:47
Alignment explanation
Indices: 36791428--36791684 Score: 365
Period size: 47 Copynumber: 5.4 Consensus size: 47
36791418 CCCTTCGGGA
* * *
36791428 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
36791475 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
36791522 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
36791569 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
36791616 CTTATCACGCATATATATACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCA--CATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
36791665 CCTATCACATATATATACTT
1 CTTATCACATATATACACTT
36791685 GTACATCAAT
Statistics
Matches: 192, Mismatches: 14, Indels: 8
0.90 0.07 0.04
Matches are distributed among these distances:
46 1 0.01
47 150 0.78
49 40 0.21
50 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:36797252 original size:18 final size:20
Alignment explanation
Indices: 36797215--36797253 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
36797205 GAGAACTTAG
*
36797215 GAAACTTTTTGAAAAGTATA
1 GAAACTTTTTCAAAAGTATA
36797235 GAAA-TTTTTCAAAA-TATA
1 GAAACTTTTTCAAAAGTATA
36797253 G
1 G
36797254 GGGACATACG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 9 0.50
20 4 0.22
ACGTcount: A:0.46, C:0.05, G:0.13, T:0.36
Consensus pattern (20 bp):
GAAACTTTTTCAAAAGTATA
Found at i:36799243 original size:21 final size:20
Alignment explanation
Indices: 36799210--36799248 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
36799200 CCAAAATTTT
36799210 CATTATTTCACACATTTCAC
1 CATTATTTCACACATTTCAC
*
36799230 CATTAATTTTACACATTTC
1 CATT-ATTTCACACATTTC
36799249 TTAATTAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.31, C:0.26, G:0.00, T:0.44
Consensus pattern (20 bp):
CATTATTTCACACATTTCAC
Found at i:36801859 original size:37 final size:37
Alignment explanation
Indices: 36801796--36802121 Score: 526
Period size: 37 Copynumber: 8.8 Consensus size: 37
36801786 GCTCAGACGA
* * ** * *
36801796 AATCTCCACACGAAGTTATCAAGTCTTACCCGGATAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
36801833 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
36801870 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
* * ** * *
36801907 AATCTCCACACGAAGTTATCAAGTCTTACCCGGATAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
36801944 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
36801981 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
36802018 AATCTCCACACGTAGTCATCGGGTCTTCCCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
36802055 AATCTCCACACATAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
36802092 AATCTCCACACGTAGTCATCGGGTCTTACC
1 AATCTCCACACGTAGTCATCGGGTCTTACC
36802122 TGGAATATAT
Statistics
Matches: 267, Mismatches: 22, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 267 1.00
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.25
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:36801990 original size:111 final size:111
Alignment explanation
Indices: 36801796--36802121 Score: 580
Period size: 111 Copynumber: 2.9 Consensus size: 111
36801786 GCTCAGACGA
36801796 AATCTCCACACGAAGTTATCAAGTCTTACCCGGATAAAATCTCCACACGTAGTCATCGGGTCTTA
1 AATCTCCACACGAAGTTATCAAGTCTTACCCGGATAAAATCTCCACACGTAGTCATCGGGTCTTA
36801861 CCCGGACATAATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
66 CCCGGACATAATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
36801907 AATCTCCACACGAAGTTATCAAGTCTTACCCGGATAAAATCTCCACACGTAGTCATCGGGTCTTA
1 AATCTCCACACGAAGTTATCAAGTCTTACCCGGATAAAATCTCCACACGTAGTCATCGGGTCTTA
36801972 CCCGGACATAATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
66 CCCGGACATAATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
* * ** * * * *
36802018 AATCTCCACACGTAGTCATCGGGTCTTCCCCGGACATAATCTCCACACATAGTCATCGGGTCTTA
1 AATCTCCACACGAAGTTATCAAGTCTTACCCGGATAAAATCTCCACACGTAGTCATCGGGTCTTA
36802083 CCCGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
66 CCCGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
36802122 TGGAATATAT
Statistics
Matches: 207, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
111 207 1.00
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.25
Consensus pattern (111 bp):
AATCTCCACACGAAGTTATCAAGTCTTACCCGGATAAAATCTCCACACGTAGTCATCGGGTCTTA
CCCGGACATAATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:36802497 original size:22 final size:22
Alignment explanation
Indices: 36802469--36802543 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
36802459 GTTCACATTC
36802469 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
36802491 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
36802515 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
36802538 ATCACA
1 ATCACA
36802544 CATATGCATG
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 16 0.40
23 7 0.17
24 7 0.17
25 10 0.25
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:36802590 original size:22 final size:22
Alignment explanation
Indices: 36802469--36802590 Score: 63
Period size: 22 Copynumber: 5.3 Consensus size: 22
36802459 GTTCACATTC
*
36802469 ATCACATTGGCCATTCGGCCTT
1 ATCACATTTGCCATTCGGCCTT
* *
36802491 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-TGCCA--TTCGGCCTT
*
36802515 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTTGCCATTCGGCCTT
* * *
36802538 ATCACACATATG-CATGCTC-ACATT
1 AT--CACATTTGCCAT--TCGGCCTT
36802562 CATCACATTTGCCATTCGGCCTT
1 -ATCACATTTGCCATTCGGCCTT
36802585 ATCACA
1 ATCACA
36802591 CATATGCATG
Statistics
Matches: 73, Mismatches: 13, Indels: 28
0.64 0.11 0.25
Matches are distributed among these distances:
22 20 0.27
23 20 0.27
24 19 0.26
25 14 0.19
ACGTcount: A:0.25, C:0.30, G:0.12, T:0.32
Consensus pattern (22 bp):
ATCACATTTGCCATTCGGCCTT
Found at i:36802663 original size:47 final size:47
Alignment explanation
Indices: 36802329--36802634 Score: 479
Period size: 47 Copynumber: 6.5 Consensus size: 47
36802319 TATATATATT
* * * * * *
36802329 TCACA-TGAGCCATTCGGCTTTACCACATATATGCATGTTCATACTCA
1 TCACATTG-GCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
*
36802376 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
* * *
36802423 TCACATTGGCCACTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
* *
36802470 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
36802517 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
*
36802564 TCACATTTGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
36802611 TCACATTGGCCATTCGGCCTTATC
1 TCACATTGGCCATTCGGCCTTATC
36802635 TCATATATAC
Statistics
Matches: 242, Mismatches: 16, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
47 240 0.99
48 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.13, T:0.31
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
Found at i:36808592 original size:30 final size:30
Alignment explanation
Indices: 36808556--36808616 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
36808546 ACCTTAACTC
36808556 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
36808586 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
36808616 A
1 A
36808617 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:36811336 original size:26 final size:26
Alignment explanation
Indices: 36811302--36811356 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
36811292 TACCTTCAAG
36811302 AATACCTTGTAACCCACTTGATACTC
1 AATACCTTGTAACCCACTTGATACTC
36811328 AATACCTTGTAACCCACTTGATACTC
1 AATACCTTGTAACCCACTTGATACTC
36811354 AAT
1 AAT
36811357 TTCTATTCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.33, C:0.29, G:0.07, T:0.31
Consensus pattern (26 bp):
AATACCTTGTAACCCACTTGATACTC
Found at i:36824152 original size:13 final size:13
Alignment explanation
Indices: 36824119--36824166 Score: 60
Period size: 13 Copynumber: 3.7 Consensus size: 13
36824109 ATGAAACTAA
* *
36824119 TATACGAAATAGT
1 TATATGAAATGGT
36824132 TATATGAAATGGT
1 TATATGAAATGGT
* *
36824145 TATGTGAATTGGT
1 TATATGAAATGGT
36824158 TATATGAAA
1 TATATGAAA
36824167 ATATATGTAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 29 1.00
ACGTcount: A:0.40, C:0.02, G:0.21, T:0.38
Consensus pattern (13 bp):
TATATGAAATGGT
Found at i:36826852 original size:26 final size:26
Alignment explanation
Indices: 36826816--36826867 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
36826806 ATTAAGACCT
36826816 CAGTTTATAAAATTACCCAAATACCC
1 CAGTTTATAAAATTACCCAAATACCC
* *
36826842 CAGTTTGTAAAATTACCGAAATACCC
1 CAGTTTATAAAATTACCCAAATACCC
36826868 TTATAGTGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.40, C:0.25, G:0.08, T:0.27
Consensus pattern (26 bp):
CAGTTTATAAAATTACCCAAATACCC
Found at i:36826888 original size:27 final size:27
Alignment explanation
Indices: 36826847--36826923 Score: 127
Period size: 27 Copynumber: 2.9 Consensus size: 27
36826837 TACCCCAGTT
*
36826847 TGTAAAATTACCGAAATACCCTTATAG
1 TGTAAAATTATCGAAATACCCTTATAG
36826874 TGTAAAATTATCGAAATACCCTTATAG
1 TGTAAAATTATCGAAATACCCTTATAG
* *
36826901 TGAAAAATTATCGAGATACCCTT
1 TGTAAAATTATCGAAATACCCTT
36826924 GTAGGGCAAA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.40, C:0.17, G:0.12, T:0.31
Consensus pattern (27 bp):
TGTAAAATTATCGAAATACCCTTATAG
Found at i:36827339 original size:22 final size:22
Alignment explanation
Indices: 36827276--36827331 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
36827266 GCTGCGTAAT
36827276 CTGATTATGGCTCTGTGCCATC
1 CTGATTATGGCTCTGTGCCATC
* **
36827298 CTAAAAATGGCTCTGTGCCATC
1 CTGATTATGGCTCTGTGCCATC
*
36827320 TTGATTATGGCT
1 CTGATTATGGCT
36827332 TTATGCCAAT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCATC
Found at i:36827459 original size:22 final size:22
Alignment explanation
Indices: 36827434--36827493 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
36827424 GATAGCCTTG
36827434 TGCCATCCTGATTATAG-CTCTC
1 TGCCATCCTGATTAT-GTCTCTC
* * *
36827456 TGCCATCCTTATTATGTCTTTG
1 TGCCATCCTGATTATGTCTCTC
*
36827478 TGCCATCTTGATTATG
1 TGCCATCCTGATTATG
36827494 GTTTATAACC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
21 1 0.03
22 31 0.97
ACGTcount: A:0.17, C:0.25, G:0.15, T:0.43
Consensus pattern (22 bp):
TGCCATCCTGATTATGTCTCTC
Found at i:36830262 original size:27 final size:26
Alignment explanation
Indices: 36830231--36830323 Score: 132
Period size: 27 Copynumber: 3.5 Consensus size: 26
36830221 TTGTAAAAAT
*
36830231 ATACCCTTGTAGTGTACAATTATCGAA
1 ATACCCTTGTAGTGTAAAATTA-CGAA
36830258 ATACCCTTGTAGTGTAAAATTACCGAA
1 ATACCCTTGTAGTGTAAAATTA-CGAA
*
36830285 ATACCCTTGTAGTATAAAATTACTGAA
1 ATACCCTTGTAGTGTAAAATTAC-GAA
*
36830312 ATACCCCTGTAG
1 ATACCCTTGTAG
36830324 GGAAAATGAT
Statistics
Matches: 61, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
26 1 0.02
27 60 0.98
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.31
Consensus pattern (26 bp):
ATACCCTTGTAGTGTAAAATTACGAA
Found at i:36830720 original size:22 final size:22
Alignment explanation
Indices: 36830686--36830744 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
36830676 TAATCTGATT
*
36830686 ATGGCTTTTTGCCAACCTAAAA
1 ATGGCTTTGTGCCAACCTAAAA
* * * **
36830708 ATGGCTCTGTGCCATCCTGATT
1 ATGGCTTTGTGCCAACCTAAAA
36830730 ATGGCTTTGTGCCAA
1 ATGGCTTTGTGCCAA
36830745 TCATATTTAC
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.34
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAA
Found at i:36830917 original size:22 final size:22
Alignment explanation
Indices: 36830882--36830979 Score: 67
Period size: 22 Copynumber: 4.5 Consensus size: 22
36830872 AATAGCGTTG
* *
36830882 TGCCATCCTAATTATGGCTCTA
1 TGCCATTCTGATTATGGCTCTA
* *
36830904 TGCCATTCTGATTATGGCTTTG
1 TGCCATTCTGATTATGGCTCTA
* *
36830926 TGCTA-TCTTGATTATGG-TTTA
1 TGCCATTC-TGATTATGGCTCTA
* * *
36830947 TAACCATTTTGTTTATGGCTCT-
1 T-GCCATTCTGATTATGGCTCTA
36830969 TGGCCATTCTG
1 T-GCCATTCTG
36830980 TTTAAGGGCA
Statistics
Matches: 58, Mismatches: 14, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
21 6 0.10
22 49 0.84
23 3 0.05
ACGTcount: A:0.17, C:0.19, G:0.18, T:0.45
Consensus pattern (22 bp):
TGCCATTCTGATTATGGCTCTA
Found at i:36832976 original size:28 final size:28
Alignment explanation
Indices: 36832940--36833014 Score: 114
Period size: 28 Copynumber: 2.7 Consensus size: 28
36832930 TCAAATATGG
* *
36832940 CACTCAGTGTACGAAATATTGAGAATGA
1 CACTTAGTGTGCGAAATATTGAGAATGA
*
36832968 CACTTAGTGTGCGAGATATTGAGAATGA
1 CACTTAGTGTGCGAAATATTGAGAATGA
*
36832996 CACTTAGTGTGCAAAATAT
1 CACTTAGTGTGCGAAATAT
36833015 CGAATGATTC
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.28
Consensus pattern (28 bp):
CACTTAGTGTGCGAAATATTGAGAATGA
Found at i:36834786 original size:11 final size:11
Alignment explanation
Indices: 36834770--36834794 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
36834760 ATGCTATGGG
36834770 TGGAAACATGT
1 TGGAAACATGT
36834781 TGGAAACATGT
1 TGGAAACATGT
36834792 TGG
1 TGG
36834795 CCTAGTGAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.28
Consensus pattern (11 bp):
TGGAAACATGT
Found at i:36836169 original size:39 final size:40
Alignment explanation
Indices: 36836074--36836334 Score: 328
Period size: 39 Copynumber: 6.7 Consensus size: 40
36836064 TTGAATGATG
*
36836074 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
36836112 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
36836153 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
36836192 TCCGGGCTAAG-CCCGAAGGCATTTGT-CGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
36836230 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
36836269 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
36836308 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
36836335 AACGAGGAGC
Statistics
Matches: 201, Mismatches: 11, Indels: 19
0.87 0.05 0.08
Matches are distributed among these distances:
38 38 0.19
39 92 0.46
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:36836240 original size:77 final size:80
Alignment explanation
Indices: 36836074--36836334 Score: 326
Period size: 77 Copynumber: 3.3 Consensus size: 80
36836064 TTGAATGATG
* * *
36836074 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT-TCCGGGCTAAGACCCGAAGGCA
36836135 TTTGTGCGAGATACTAAT
63 TTTGTGCGAGATACTAAT
36836153 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGACCCGAAGGCATTT
36836216 GT-CGAGATACTAAT
66 GTGCGAGATACTAAT
* * * *
36836230 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGACCCGAAGGCATTT
36836294 GTGCGA-ATTACT-AT
66 GTGCGAGA-TACTAAT
* *
36836308 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
36836335 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 8, Indels: 17
0.87 0.04 0.09
Matches are distributed among these distances:
77 59 0.36
78 41 0.25
79 39 0.24
80 25 0.15
81 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGACCCGAAGGCATTT
GTGCGAGATACTAAT
Found at i:36844194 original size:39 final size:40
Alignment explanation
Indices: 36844099--36844360 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
36844089 TTGAATGATG
*
36844099 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
36844137 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
36844178 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
36844217 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
36844256 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
36844295 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
36844334 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
36844361 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:36846994 original size:14 final size:14
Alignment explanation
Indices: 36846975--36847004 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
36846965 ATTATGACCC
36846975 ATGTATTCGAATTT
1 ATGTATTCGAATTT
36846989 ATGTATTCGAATTT
1 ATGTATTCGAATTT
36847003 AT
1 AT
36847005 AATAAGTGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.30, C:0.07, G:0.13, T:0.50
Consensus pattern (14 bp):
ATGTATTCGAATTT
Found at i:36847946 original size:39 final size:39
Alignment explanation
Indices: 36847887--36847964 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
36847877 CAAGTGTACA
* *
36847887 TAGTCGTTATCAAGTCATAAGTAAGTATCGAGTTATCGT
1 TAGTCGTAATCAAGTAATAAGTAAGTATCGAGTTATCGT
*
36847926 TAGTCGTAATCAAGTAATAAGTAAGTCTCGAGTTATCGT
1 TAGTCGTAATCAAGTAATAAGTAAGTATCGAGTTATCGT
36847965 CTCCACAGGG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.35
Consensus pattern (39 bp):
TAGTCGTAATCAAGTAATAAGTAAGTATCGAGTTATCGT
Found at i:36853248 original size:6 final size:6
Alignment explanation
Indices: 36853230--36853286 Score: 55
Period size: 6 Copynumber: 9.3 Consensus size: 6
36853220 AAGAAACATT
* *
36853230 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
36853279 ATCAGA AT
1 ATCAGA AT
36853287 GTGAATGCAA
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
5 3 0.07
6 34 0.81
7 4 0.10
8 1 0.02
ACGTcount: A:0.49, C:0.16, G:0.16, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:36853502 original size:27 final size:27
Alignment explanation
Indices: 36853403--36853504 Score: 111
Period size: 27 Copynumber: 3.8 Consensus size: 27
36853393 CAGCATGGCT
** *
36853403 ACCAGAA-CAGATATTGTGATAGAGTC
1 ACCAGAATCAGATATTGTGGCAGAGCC
*
36853429 ACCAG-ATACAGATATTTTGGCAGAGCC
1 ACCAGAAT-CAGATATTGTGGCAGAGCC
*
36853456 ACCAGAA-CAGATATTTGTGGCATAGCC
1 ACCAGAATCAGATA-TTGTGGCAGAGCC
*
36853483 ACCAGAATCAGATAATGTGGCA
1 ACCAGAATCAGATATTGTGGCA
36853505 ATGCCACTTA
Statistics
Matches: 64, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
25 1 0.02
26 11 0.17
27 45 0.70
28 7 0.11
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.22
Consensus pattern (27 bp):
ACCAGAATCAGATATTGTGGCAGAGCC
Found at i:36853511 original size:54 final size:53
Alignment explanation
Indices: 36853403--36853504 Score: 125
Period size: 54 Copynumber: 1.9 Consensus size: 53
36853393 CAGCATGGCT
* * * *
36853403 ACCAGAACAGATATTGTGATAGAGTCACCAGATACAGATATTTTGGCAGAGCC
1 ACCAGAACAGATATTGTGACAGAGCCACCAGATACAGATAATGTGGCAGAGCC
* *
36853456 ACCAGAACAGATATTTGTGGCATAGCCACCAGA-ATCAGATAATGTGGCA
1 ACCAGAACAGATA-TTGTGACAGAGCCACCAGATA-CAGATAATGTGGCA
36853505 ATGCCACTTA
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
53 14 0.34
54 27 0.66
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.22
Consensus pattern (53 bp):
ACCAGAACAGATATTGTGACAGAGCCACCAGATACAGATAATGTGGCAGAGCC
Found at i:36854102 original size:27 final size:27
Alignment explanation
Indices: 36854072--36854302 Score: 284
Period size: 27 Copynumber: 8.6 Consensus size: 27
36854062 ACCCCAATAA
36854072 GGTATCTT-GGTAATTCTACCCTACAGG
1 GGTAT-TTCGGTAATTCTACCCTACAGG
* * * *
36854099 GGTATTTCGATAATTATACCTTACAGA
1 GGTATTTCGGTAATTCTACCCTACAGG
** *
36854126 GGTATTTCAATAATTCTACCCTAGAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
36854153 GGTATTTCGATAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * *
36854180 GGTATTTCAGTAATTCTACCATATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
36854207 GGTATTTTGGTAATTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
36854234 GGTATTTCGGTAATTCTACCTTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
36854261 GGTATTTCGGTAATTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * *
36854288 GTTGTTTTGGTAATT
1 GGTATTTCGGTAATT
36854303 TTGTAAATCA
Statistics
Matches: 177, Mismatches: 26, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
26 2 0.01
27 175 0.99
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (27 bp):
GGTATTTCGGTAATTCTACCCTACAGG
Found at i:36854326 original size:81 final size:81
Alignment explanation
Indices: 36854080--36854329 Score: 207
Period size: 81 Copynumber: 3.1 Consensus size: 81
36854070 AAGGTATCTT
* * * * ***
36854080 GGTAATTCTACCCTACAGGGGTATTTC-GATAATTATACCTTACAGAGGTATTTCAATAATTCTA
1 GGTAATTCTACCCTACAGGGGTATTTCAG-TAATTCTACCATATAGGGGTATTTTGGTAATTCTA
** * * ***
36854144 CCCTAGAGGGGTATTTC
65 CCAAATAAGGGTAAAAC
*
36854161 GATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCATATAGGGGTATTTTGGTAATTCTAC
1 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCATATAGGGGTATTTTGGTAATTCTAC
** * ***
36854226 CCTATAGGGGTATTTC
66 CAAATAAGGGTAAAAC
* * * * * **
36854242 GGTAATTCTACCTTACAGGGGTATTTCGGTAATTCTACCCTATAGGGTTGTTTTGGTAATT-TTG
1 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCATATAGGGGTATTTTGGTAATTCTAC
*
36854306 TAAATCAAGGGTAAAAC
66 CAAAT-AAGGGTAAAAC
36854323 GGTAATT
1 GGTAATT
36854330 TTGTAAATCG
Statistics
Matches: 143, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
80 3 0.02
81 139 0.97
82 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.36
Consensus pattern (81 bp):
GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCATATAGGGGTATTTTGGTAATTCTAC
CAAATAAGGGTAAAAC
Found at i:36854353 original size:27 final size:27
Alignment explanation
Indices: 36854323--36854544 Score: 189
Period size: 27 Copynumber: 8.3 Consensus size: 27
36854313 AGGGTAAAAC
* ** *
36854323 GGTAATTTTGTAAATCGGGGGTACTTT
1 GGTAATTTTGCAAATCAAGGGTATTTT
* * *
36854350 GGTAATTTTACAAGTCAAAGGTATTTT
1 GGTAATTTTGCAAATCAAGGGTATTTT
* * *
36854377 AGTAATTTTACAAATC-AGGGTATTTC
1 GGTAATTTTGCAAATCAAGGGTATTTT
* *
36854403 AGTAATTTTGCAAATCGAA-GGTATTTC
1 GGTAATTTTGCAAATC-AAGGGTATTTT
**
36854430 GGTAATTTTGCAAATCGGGGGTATTTT
1 GGTAATTTTGCAAATCAAGGGTATTTT
* * *
36854457 GGTAATTTTACAAATTAGGGGTATTTT
1 GGTAATTTTGCAAATCAAGGGTATTTT
* * *
36854484 GGTAATTTTACAAA-CCAGGGTATTTC
1 GGTAATTTTGCAAATCAAGGGTATTTT
** * * *
36854510 AATAATTTTGCTAATCGAGTGTATTTT
1 GGTAATTTTGCAAATCAAGGGTATTTT
36854537 GGTAATTT
1 GGTAATTT
36854545 GGTAAACTAA
Statistics
Matches: 159, Mismatches: 32, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
26 41 0.26
27 117 0.74
28 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (27 bp):
GGTAATTTTGCAAATCAAGGGTATTTT
Found at i:36854434 original size:80 final size:81
Alignment explanation
Indices: 36854324--36854497 Score: 208
Period size: 80 Copynumber: 2.2 Consensus size: 81
36854314 GGGTAAAACG
* ** *
36854324 GTAATTTTGTAAATCGGGGGTACTTTGGTAATTTTACAAGTCAAAGGTATTTTAGTAATTTTACA
1 GTAATTTTGCAAATCGAAGGTACTTTGGTAATTTTACAAATCAAAGGTATTTTAGTAATTTTACA
36854389 AATCA-GGGTATTTCA
66 AATCAGGGGTATTTCA
* *** *
36854404 GTAATTTTGCAAATCGAAGGTA-TTTCGGTAATTTTGCAAATCGGGGGTATTTTGGTAATTTTAC
1 GTAATTTTGCAAATCGAAGGTACTTT-GGTAATTTTACAAATCAAAGGTATTTTAGTAATTTTAC
* **
36854468 AAATTAGGGGTATTTTG
65 AAATCAGGGGTATTTCA
*
36854485 GTAATTTTACAAA
1 GTAATTTTGCAAA
36854498 CCAGGGTATT
Statistics
Matches: 79, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
79 3 0.04
80 56 0.71
81 20 0.25
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.40
Consensus pattern (81 bp):
GTAATTTTGCAAATCGAAGGTACTTTGGTAATTTTACAAATCAAAGGTATTTTAGTAATTTTACA
AATCAGGGGTATTTCA
Found at i:36854446 original size:107 final size:107
Alignment explanation
Indices: 36854322--36854544 Score: 331
Period size: 107 Copynumber: 2.1 Consensus size: 107
36854312 AAGGGTAAAA
* *
36854322 CGGTAATTTTGTAAATCGGGGGTACTTTGGTAATTTTACAAGTCAAAGGTATTTTAGTAATTTTA
1 CGGTAATTTTGCAAATCGGGGGTACTTTGGTAATTTTACAAATCAAAGGTATTTTAGTAATTTTA
* *
36854387 CAAATCAGGGTATTTCAGTAATTTTGCAAATCGAAG-GTATTT
66 CAAACCAGGGTATTTCAATAATTTTGCAAATCG-AGTGTATTT
* * ** *
36854429 CGGTAATTTTGCAAATCGGGGGTATTTTGGTAATTTTACAAATTAGGGGTATTTTGGTAATTTTA
1 CGGTAATTTTGCAAATCGGGGGTACTTTGGTAATTTTACAAATCAAAGGTATTTTAGTAATTTTA
*
36854494 CAAACCAGGGTATTTCAATAATTTTGCTAATCGAGTGTATTT
66 CAAACCAGGGTATTTCAATAATTTTGCAAATCGAGTGTATTT
*
36854536 TGGTAATTT
1 CGGTAATTT
36854545 GGTAAACTAA
Statistics
Matches: 104, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
106 2 0.02
107 102 0.98
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (107 bp):
CGGTAATTTTGCAAATCGGGGGTACTTTGGTAATTTTACAAATCAAAGGTATTTTAGTAATTTTA
CAAACCAGGGTATTTCAATAATTTTGCAAATCGAGTGTATTT
Found at i:36854506 original size:80 final size:80
Alignment explanation
Indices: 36854369--36854544 Score: 228
Period size: 80 Copynumber: 2.2 Consensus size: 80
36854359 ACAAGTCAAA
* * * **
36854369 GGTATTTTAGTAATTTTACAAATCAGGGTATTTCAGTAATTTTGCAAATCGAAGGTATTTCGGTA
1 GGTATTTTGGTAATTTTACAAATCAGGGTATTTCAGTAATTTTACAAATCCAAGGTATTTCAATA
*
36854434 ATTTTGCAAATCGGG
66 ATTTTGCAAATCGAG
* ** *
36854449 GGTATTTTGGTAATTTTACAAATTAGGGGTATTTTGGTAATTTTACAAA-CCAGGGTATTTCAAT
1 GGTATTTTGGTAATTTTACAAATCA-GGGTATTTCAGTAATTTTACAAATCCAAGGTATTTCAAT
*
36854513 AATTTTGCTAATCGAG
65 AATTTTGCAAATCGAG
*
36854529 TGTATTTTGGTAATTT
1 GGTATTTTGGTAATTT
36854545 GGTAAACTAA
Statistics
Matches: 83, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
80 63 0.76
81 20 0.24
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.42
Consensus pattern (80 bp):
GGTATTTTGGTAATTTTACAAATCAGGGTATTTCAGTAATTTTACAAATCCAAGGTATTTCAATA
ATTTTGCAAATCGAG
Found at i:36856603 original size:21 final size:20
Alignment explanation
Indices: 36856565--36856604 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
36856555 ATACTTAGTA
*
36856565 AAAGGTATCATACTTTTTGG
1 AAAGGTATCATACATTTTGG
*
36856585 AAAGGTATTGATACATTTTG
1 AAAGGTA-TCATACATTTTG
36856605 TAATTGATTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.33, C:0.07, G:0.20, T:0.40
Consensus pattern (20 bp):
AAAGGTATCATACATTTTGG
Found at i:36857926 original size:18 final size:18
Alignment explanation
Indices: 36857892--36857951 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
36857882 AATCGGTTAA
* *
36857892 TCAGTAATATTCATTTAT
1 TCAGTAACAGTCATTTAT
* *
36857910 TCAGTATCAGTCGTTTAT
1 TCAGTAACAGTCATTTAT
*
36857928 TCTA-TAACAGTCAATTAT
1 TC-AGTAACAGTCATTTAT
36857946 TCAGTA
1 TCAGTA
36857952 GCAGACAGTC
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
17 1 0.03
18 31 0.94
19 1 0.03
ACGTcount: A:0.32, C:0.15, G:0.10, T:0.43
Consensus pattern (18 bp):
TCAGTAACAGTCATTTAT
Found at i:36858487 original size:37 final size:37
Alignment explanation
Indices: 36858438--36858509 Score: 85
Period size: 37 Copynumber: 1.9 Consensus size: 37
36858428 TTCAATTTTC
*
36858438 CACTCAATATTCA-CATATTCTATTCAATATCAATAAT
1 CACTCAATATTCATCAAATTCTATTCAAT-TCAATAAT
* *
36858475 CACT-AATAATTCATGAAATTTTATTCAATTCAATA
1 CACTCAAT-ATTCATCAAATTCTATTCAATTCAATA
36858510 CCATAATAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
36 3 0.10
37 15 0.50
38 12 0.40
ACGTcount: A:0.42, C:0.18, G:0.01, T:0.39
Consensus pattern (37 bp):
CACTCAATATTCATCAAATTCTATTCAATTCAATAAT
Found at i:36858520 original size:3 final size:3
Alignment explanation
Indices: 36858512--36858541 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
36858502 ATTCAATACC
36858512 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
36858542 GTACTTATGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:36860405 original size:20 final size:20
Alignment explanation
Indices: 36860339--36860405 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
36860329 ATTTTGATAA
*
36860339 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
36860359 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
*
36860379 ACCTGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
36860399 ACGTGAT
1 ACATGAT
36860406 GTAATCATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.31, C:0.13, G:0.22, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:36860486 original size:23 final size:23
Alignment explanation
Indices: 36860456--36860622 Score: 253
Period size: 23 Copynumber: 7.1 Consensus size: 23
36860446 AGGAAGTGAA
36860456 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
36860479 AAAGGGCTTGTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
36860502 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
*
36860526 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
*
36860550 AAAGGGCTTACGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
36860573 AAAGGGCTTATGCCCCAGTTATAA
1 AAAGGGCTTATGCCCCAGTTAT-T
*
36860597 AAAGGGCTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
36860620 AAA
1 AAA
36860623 AGAGGCTAGG
Statistics
Matches: 133, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
23 67 0.50
24 66 0.50
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.28
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:36860534 original size:24 final size:23
Alignment explanation
Indices: 36860455--36860644 Score: 256
Period size: 24 Copynumber: 8.0 Consensus size: 23
36860445 GAGGAAGTGA
36860455 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
* *
36860478 TAAAGGGCTTGTGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
36860501 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
36860524 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
36860548 CAAAAGGGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
36860572 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
36860595 AAAAAGGGCTTTTGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
*
36860620 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
36860644 A
1 A
36860645 TGATAAAGCA
Statistics
Matches: 151, Mismatches: 11, Indels: 9
0.88 0.06 0.05
Matches are distributed among these distances:
23 64 0.42
24 76 0.50
25 11 0.07
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:36860577 original size:47 final size:46
Alignment explanation
Indices: 36860455--36860644 Score: 265
Period size: 47 Copynumber: 4.0 Consensus size: 46
36860445 GAGGAAGTGA
*
36860455 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTGTGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* *
36860501 TAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
*
36860548 CAAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* *
36860595 AAAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTATT-AAAG-GGCTTATGCC-CCAGTTAT
36860644 A
1 A
36860645 TGATAAAGCA
Statistics
Matches: 129, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
46 22 0.17
47 65 0.50
48 31 0.24
49 11 0.09
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (46 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:36862248 original size:16 final size:15
Alignment explanation
Indices: 36862226--36862264 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
36862216 CTTTTTCTCC
36862226 TTCTTTCTCCACTGT
1 TTCTTTCTCCACTGT
* *
36862241 TTCATTTCTTCTCTGT
1 TTC-TTTCTCCACTGT
36862257 TTCTTTCT
1 TTCTTTCT
36862265 ATTCTTTTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.05, C:0.28, G:0.05, T:0.62
Consensus pattern (15 bp):
TTCTTTCTCCACTGT
Found at i:36863566 original size:35 final size:35
Alignment explanation
Indices: 36863520--36863591 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
36863510 TATCTATTCC
*
36863520 TTTTCTTGCTGCATCCAATCAAATGCTATGAAGTT
1 TTTTCTTGCTGCATCCAATCAAATACTATGAAGTT
36863555 TTTTCTTGCTGCATCCAATCAAATACTATGAAGTT
1 TTTTCTTGCTGCATCCAATCAAATACTATGAAGTT
36863590 TT
1 TT
36863592 ACATTCACAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.26, C:0.19, G:0.12, T:0.42
Consensus pattern (35 bp):
TTTTCTTGCTGCATCCAATCAAATACTATGAAGTT
Found at i:36865461 original size:25 final size:25
Alignment explanation
Indices: 36865433--36865510 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 25
36865423 CTCGGCCCTG
36865433 TCACATATATACACTTTCACATTCA
1 TCACATATATACACTTTCACATTCA
*** *** *
36865458 TCACAT-TGGCCA-TTAGGCCTT-A
1 TCACATATATACACTTTCACATTCA
36865480 TCACATATATACACTTTCACATTCA
1 TCACATATATACACTTTCACATTCA
36865505 TCACAT
1 TCACAT
36865511 CGGCTATTAG
Statistics
Matches: 36, Mismatches: 14, Indels: 6
0.64 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 13 0.36
ACGTcount: A:0.32, C:0.28, G:0.05, T:0.35
Consensus pattern (25 bp):
TCACATATATACACTTTCACATTCA
Found at i:36865612 original size:49 final size:47
Alignment explanation
Indices: 36865382--36865817 Score: 590
Period size: 47 Copynumber: 9.4 Consensus size: 47
36865372 GCCCTTCGGA
* * * * * *
36865382 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
36865429 CCTGTCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36865476 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36865523 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36865570 CTTATCACATATATGTACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATA--TACACTTTCACATTCATCACATCGGCCATTAGGC
*
36865619 CTTATCAC----AT--ACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36865660 CTTATCACATATATACACTTTCACATTAATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36865707 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36865756 CTTATCAC----AT--ACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36865797 CTTATCTCATATATACACTTT
1 CTTATCACATATATACACTTT
36865818 ATCTTGGCCG
Statistics
Matches: 347, Mismatches: 26, Indels: 32
0.86 0.06 0.08
Matches are distributed among these distances:
41 71 0.20
43 3 0.01
45 5 0.01
47 184 0.53
49 84 0.24
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36865634 original size:41 final size:41
Alignment explanation
Indices: 36865588--36865807 Score: 242
Period size: 41 Copynumber: 5.0 Consensus size: 41
36865578 ATATATGTAC
* *
36865588 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
*
36865629 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATAT
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC----AT
*
36865674 ACACTTTCACATTAATCACATCGGCCATTAGGCCTTATCACATATATAT
1 --ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC------AT
* *
36865723 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT
1 --ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
* *
36865766 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCTCAT
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
36865807 A
1 A
36865808 TATACACTTT
Statistics
Matches: 159, Mismatches: 12, Indels: 16
0.85 0.06 0.09
Matches are distributed among these distances:
41 74 0.47
43 2 0.01
45 2 0.01
47 37 0.23
49 44 0.28
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (41 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
Found at i:36865673 original size:137 final size:136
Alignment explanation
Indices: 36865382--36865817 Score: 694
Period size: 137 Copynumber: 3.2 Consensus size: 136
36865372 GCCCTTCGGA
* * * * * * * *
36865382 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATA-TACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATTACA
*
36865446 CTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
66 CTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC----AT--ACTTTCACATTCATCACAT
36865511 CGGCTATTAGGC
125 CGGCTATTAGGC
36865523 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATGTAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT-TAC
36865588 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATACTTTCACATTCATCACATCGGCT
65 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATACTTTCACATTCATCACATCGGCT
36865653 ATTAGGC
130 ATTAGGC
*
36865660 CTTATCACATATATACACTTTCACATTAATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT-TAC
36865725 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATACTTTCACATTCATCACATCGGCT
65 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATACTTTCACATTCATCACATCGGCT
36865790 ATTAGGC
130 ATTAGGC
*
36865797 CTTATCTCATATATACACTTT
1 CTTATCACATATATACACTTT
36865818 ATCTTGGCCG
Statistics
Matches: 281, Mismatches: 12, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
137 186 0.66
139 2 0.01
141 52 0.19
143 41 0.15
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (136 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATTACA
CTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATACTTTCACATTCATCACATCGGCTA
TTAGGC
Found at i:36882963 original size:43 final size:43
Alignment explanation
Indices: 36882864--36883016 Score: 247
Period size: 43 Copynumber: 3.6 Consensus size: 43
36882854 GCATTTCGCT
36882864 TGCTAGGCTCGAAGCCCGATATCATCTCACTGACATT-TAGCC
1 TGCTAGGCTCGAAGCCCGATATCATCTCACTGACATTATAGCC
* *
36882906 TGCTAGGCCCGAAGCCCGATATCAACTCACTGACATTATAGCC
1 TGCTAGGCTCGAAGCCCGATATCATCTCACTGACATTATAGCC
* *
36882949 TGCTAGGC-CTGAAGCCCGATATCATCTCACCGGCATTATAGCC
1 TGCTAGGCTC-GAAGCCCGATATCATCTCACTGACATTATAGCC
36882992 TGCTAGGCTCGAAGCCCGATATCAT
1 TGCTAGGCTCGAAGCCCGATATCAT
36883017 ATCATCGGTA
Statistics
Matches: 103, Mismatches: 5, Indels: 5
0.91 0.04 0.04
Matches are distributed among these distances:
42 36 0.35
43 66 0.64
44 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (43 bp):
TGCTAGGCTCGAAGCCCGATATCATCTCACTGACATTATAGCC
Found at i:36883051 original size:43 final size:43
Alignment explanation
Indices: 36882844--36883053 Score: 227
Period size: 43 Copynumber: 5.0 Consensus size: 43
36882834 AAGTCTGAAC
* *
36882844 TCAT-TCACCGGCATT-TCGCTTGCTAGGCTCGAAGCCCGATA
1 TCATATCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATA
* * * *
36882885 TCATCTCACTGACATT-TAGCCTGCTAGGCCCGAAGCCCGATA
1 TCATATCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATA
* *
36882927 TCA-ACTCACTGACATTATAGCCTGCTAGGC-CTGAAGCCCGATA
1 TCATA-TCACCGGCATTATAGCCTGCTAGGCTC-GAAGCCCGATA
*
36882970 TCATCTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATA
1 TCATATCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATA
* * *
36883013 TCATATCATCGGTATTATAGTCC-GGTAGGCTC-ACAGCCCGA
1 TCATATCACCGGCATTATAG-CCTGCTAGGCTCGA-AGCCCGA
36883054 ATGTCACATT
Statistics
Matches: 148, Mismatches: 13, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
41 4 0.03
42 48 0.32
43 93 0.63
44 3 0.02
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.25
Consensus pattern (43 bp):
TCATATCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATA
Found at i:36890898 original size:43 final size:43
Alignment explanation
Indices: 36890828--36891001 Score: 255
Period size: 43 Copynumber: 4.1 Consensus size: 43
36890818 AAGTCTGAAC
* *
36890828 TCAT-TCACTGGCATT-TCGCCTGCTAGGCTCGAAGCCCGATA
1 TCATCTCACTGACATTATAGCCTGCTAGGCTCGAAGCCCGATA
* *
36890869 TCATCTCACTGACATTTTAGCCTGCTAGGCCCGAAGCCCGATA
1 TCATCTCACTGACATTATAGCCTGCTAGGCTCGAAGCCCGATA
*
36890912 TCAACTCACTGACATTATAGCCTGCTAGGC-CTGAAGCCCGATA
1 TCATCTCACTGACATTATAGCCTGCTAGGCTC-GAAGCCCGATA
* *
36890955 TCATCTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATA
1 TCATCTCACTGACATTATAGCCTGCTAGGCTCGAAGCCCGATA
36890998 TCAT
1 TCAT
36891002 ATCATCGGTA
Statistics
Matches: 121, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
41 4 0.03
42 11 0.09
43 105 0.87
44 1 0.01
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.25
Consensus pattern (43 bp):
TCATCTCACTGACATTATAGCCTGCTAGGCTCGAAGCCCGATA
Found at i:36891036 original size:43 final size:43
Alignment explanation
Indices: 36890828--36891038 Score: 227
Period size: 43 Copynumber: 5.0 Consensus size: 43
36890818 AAGTCTGAAC
* *
36890828 TCAT-TCACTGGCATT-TCGCCTGCTAGGCTCGAAGCCCGATA
1 TCATATCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATA
* * * * *
36890869 TCATCTCACTGACATTTTAGCCTGCTAGGCCCGAAGCCCGATA
1 TCATATCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATA
* *
36890912 TCA-ACTCACTGACATTATAGCCTGCTAGGC-CTGAAGCCCGATA
1 TCATA-TCACCGGCATTATAGCCTGCTAGGCTC-GAAGCCCGATA
*
36890955 TCATCTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATA
1 TCATATCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATA
* * *
36890998 TCATATCATCGGTATTATAGTCC-GGTAGGCTC-ACAGCCCGA
1 TCATATCACCGGCATTATAG-CCTGCTAGGCTCGA-AGCCCGA
36891039 ATGTCACATT
Statistics
Matches: 150, Mismatches: 12, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
41 4 0.03
42 12 0.08
43 131 0.87
44 3 0.02
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.25
Consensus pattern (43 bp):
TCATATCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATA
Found at i:36896593 original size:72 final size:72
Alignment explanation
Indices: 36896501--36896688 Score: 254
Period size: 72 Copynumber: 2.6 Consensus size: 72
36896491 TATGTAATAT
* ** *
36896501 GGGTCTGGGTGCTGACTTTGTGTATAAACCAGTGAGTAACTCGCTGAGCGAGCA-TATCATGTTA
1 GGGTCCGGGTGCTGACTTTGTGTATAAACCAGTGAGTAACTCAATGAGCGAGCATTA-CATGATA
36896565 ATGCTTTG
65 ATGCTTTG
* * *
36896573 GGGTCCGGGTACTGACTTTGTGTATAAACTC-GTGAGTAGCTCAATGAGCGGGCATTACATGATA
1 GGGTCCGGGTGCTGACTTTGTGTATAAAC-CAGTGAGTAACTCAATGAGCGAGCATTACATGATA
36896637 ATGCTTTG
65 ATGCTTTG
* * *
36896645 GGGTCCGGGTGCTGACTTTGTGTACAGACCAGTGAGTAGCTCAA
1 GGGTCCGGGTGCTGACTTTGTGTATAAACCAGTGAGTAACTCAA
36896689 ATGTGGGCAT
Statistics
Matches: 103, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
71 1 0.01
72 99 0.96
73 3 0.03
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (72 bp):
GGGTCCGGGTGCTGACTTTGTGTATAAACCAGTGAGTAACTCAATGAGCGAGCATTACATGATAA
TGCTTTG
Found at i:36900959 original size:25 final size:25
Alignment explanation
Indices: 36900912--36900959 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
36900902 TTATAATATG
* * * *
36900912 AAAATGACCGTTTTGCCCTTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
36900937 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
36900960 GTTTATATAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:36901059 original size:20 final size:20
Alignment explanation
Indices: 36900996--36901061 Score: 114
Period size: 20 Copynumber: 3.3 Consensus size: 20
36900986 ATTTTGATAA
*
36900996 ACATGATATGTATGATATGC
1 ACATGACATGTATGATATGC
*
36901016 ACACGACATGTATGATATGC
1 ACATGACATGTATGATATGC
36901036 ACATGACATGTATGATATGC
1 ACATGACATGTATGATATGC
36901056 ACATGA
1 ACATGA
36901062 TGTATTCATA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.29
Consensus pattern (20 bp):
ACATGACATGTATGATATGC
Found at i:36901138 original size:24 final size:24
Alignment explanation
Indices: 36901112--36901241 Score: 215
Period size: 24 Copynumber: 5.4 Consensus size: 24
36901102 GAGAAAGTGC
* *
36901112 AAAAGGGCTTATGCCCCAATTATC
1 AAAAGGGCTTATGCCCCAGTTATT
36901136 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
36901160 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
36901184 AAAATGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
36901208 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
36901232 AAAAGAGGCT
1 AAAAG-GGCT
36901242 AGGCCTCACT
Statistics
Matches: 100, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
24 96 0.96
25 4 0.04
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:36909233 original size:25 final size:25
Alignment explanation
Indices: 36909204--36909251 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
36909194 TTATAATATG
* * *
36909204 AAAATAACCTTTTTGCCCCTAGGTA
1 AAAATAACCATTATACCCCTAGGTA
36909229 AAAATAACCATTATACCCCTAGG
1 AAAATAACCATTATACCCCTAGG
36909252 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.38, C:0.25, G:0.10, T:0.27
Consensus pattern (25 bp):
AAAATAACCATTATACCCCTAGGTA
Found at i:36909326 original size:25 final size:25
Alignment explanation
Indices: 36909288--36909335 Score: 80
Period size: 25 Copynumber: 1.9 Consensus size: 25
36909278 ATTTTGATAA
36909288 ACATGATATGTATGATATGCACACG
1 ACATGATATGTATGATATGCACACG
36909313 ACATG-TATGATATGATATGCACA
1 ACATGATATG-TATGATATGCACA
36909336 TGATGTATTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 4 0.18
25 18 0.82
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.29
Consensus pattern (25 bp):
ACATGATATGTATGATATGCACACG
Found at i:36909503 original size:25 final size:24
Alignment explanation
Indices: 36909388--36909507 Score: 179
Period size: 24 Copynumber: 5.0 Consensus size: 24
36909378 GAGGAAGTGC
*
36909388 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
*
36909412 AAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
36909436 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
36909460 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
36909484 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
36909508 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
24 77 0.88
25 11 0.12
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:36912577 original size:47 final size:47
Alignment explanation
Indices: 36912475--36912966 Score: 362
Period size: 47 Copynumber: 10.6 Consensus size: 47
36912465 GTGCTACTGT
* * *
36912475 ATGTCCCAGACATGTCTTACACTAGC-ACGAAGC-TT-A-GCCGATGC
1 ATGTCCCAGACATGTCTTACACTGGCTAC-CATCATTGAGGCCGATGC
* *
36912519 ATGTCCCAGACACGTCTTACATTGGCTACCATCATTGAGGCCGATGC
1 ATGTCCCAGACATGTCTTACACTGGCTACCATCATTGAGGCCGATGC
* * * * * * *
36912566 ATGTCCTAGACATGTCTTACACTAGCT-CTCGT-GTATAAGTG-CTACTGT
1 ATGTCCCAGACATGTCTTACACTGGCTAC-CATCAT-TGAG-GCCGA-TGC
* * * *
36912614 ATGTCCCAGACATGTCTTACACTAGC-ACGAAGC-TT-A-GTCGATGC
1 ATGTCCCAGACATGTCTTACACTGGCTAC-CATCATTGAGGCCGATGC
* * *
36912658 ATGTCCCAGACACGTCTTACATTGGCTACCATCATTGAGGTCGATGC
1 ATGTCCCAGACATGTCTTACACTGGCTACCATCATTGAGGCCGATGC
* * *
36912705 ATGTCCCAGACACGTCTTACATTGGCTACCACCATTGAGGCCGATGC
1 ATGTCCCAGACATGTCTTACACTGGCTACCATCATTGAGGCCGATGC
* * * * * * *
36912752 ATGTCCTAGACATGTCTTACACTAGCT-CTCGT-GTATAAGTG-CTACTGT
1 ATGTCCCAGACATGTCTTACACTGGCTAC-CATCAT-TGAG-GCCGA-TGC
* * *
36912800 ATGTCCCAAACATGTCTTACACTAGCATGA--AGC-TT-A-GCCGATGC
1 ATGTCCCAGACATGTCTTACACTGGC-T-ACCATCATTGAGGCCGATGC
*
36912844 ATGTCCCAGACACGTCTTACACTGGCTACCATCATTGAGGCCGATGC
1 ATGTCCCAGACATGTCTTACACTGGCTACCATCATTGAGGCCGATGC
* * *
36912891 ATGTCCTAGACATGTCTTACACTGGC-ACTTATC-TCT-ACGCCGATGCC
1 ATGTCCCAGACATGTCTTACACTGGCTAC-CATCAT-TGAGGCCGATG-C
36912938 ATGTCCCAGACATGGTCTTACACTGGCTA
1 ATGTCCCAGACAT-GTCTTACACTGGCTA
36912967 TCGTAATGTG
Statistics
Matches: 361, Mismatches: 53, Indels: 63
0.76 0.11 0.13
Matches are distributed among these distances:
42 1 0.00
43 1 0.00
44 81 0.22
45 14 0.04
46 20 0.06
47 171 0.47
48 71 0.20
49 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.27
Consensus pattern (47 bp):
ATGTCCCAGACATGTCTTACACTGGCTACCATCATTGAGGCCGATGC
Found at i:36912625 original size:48 final size:46
Alignment explanation
Indices: 36912419--36913057 Score: 241
Period size: 47 Copynumber: 13.8 Consensus size: 46
36912409 GTTAAGTTGT
36912419 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTGTATAAGTG
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTGTATAAG-G
* * * * *
36912468 CTACTGTATGTCCCAGACATGTCTTACACTAG--CACGAAGCT-T-AGC
1 CGA-TGCATGTCCCAGACATGTCTTACACTAGCTCTCG-TG-TATAAGG
* * * * * *
36912513 CGATGCATGTCCCAGACACGTCTTACATTGGCTAC-CAT-CATTGAGG
1 CGATGCATGTCCCAGACATGTCTTACACTAGCT-CTCGTGTA-TAAGG
*
36912559 CCGATGCATGTCCTAGACATGTCTTACACTAGCTCTCGTGTATAAGTG
1 -CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTGTATAAG-G
* * * * *
36912607 CTACTGTATGTCCCAGACATGTCTTACACTAG--CACGAAGCT-T-AGT
1 CGA-TGCATGTCCCAGACATGTCTTACACTAGCTCTCG-TG-TATAAGG
* * * * * *
36912652 CGATGCATGTCCCAGACACGTCTTACATTGGCTAC-CAT-CATTGAGG
1 CGATGCATGTCCCAGACATGTCTTACACTAGCT-CTCGTGTA-TAAGG
* * * *** *
36912698 TCGATGCATGTCCCAGACACGTCTTACATTGGCTAC-C-ACCATTGAGG
1 -CGATGCATGTCCCAGACATGTCTTACACTAGCT-CTCGTGTA-TAAGG
*
36912745 CCGATGCATGTCCTAGACATGTCTTACACTAGCTCTCGTGTATAAGTG
1 -CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTGTATAAG-G
* * * * * *
36912793 CTACTGTATGTCCCAAACATGTCTTACACTAGC-AT-GAAGCT-T-AGC
1 CGA-TGCATGTCCCAGACATGTCTTACACTAGCTCTCG-TG-TATAAGG
* * * * *
36912838 CGATGCATGTCCCAGACACGTCTTACACTGGCTAC-CAT-CATTGAGG
1 CGATGCATGTCCCAGACATGTCTTACACTAGCT-CTCGTGTA-TAAGG
* * * ** * * * *
36912884 CCGATGCATGTCCTAGACATGTCTTACACTGGCACTTATCTCTACGC
1 -CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTGTATAAGG
* * * **
36912931 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGT-AATGTGG
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTGTATAAGG
* * * * * *
36912978 C--TG-ATGT-CCAAACACGTCTTACACTAGCCCTCGTCTCA-ATGT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTGT-ATAAGG
* *
36913020 CGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTC
36913058 ACATAAACCA
Statistics
Matches: 446, Mismatches: 95, Indels: 99
0.70 0.15 0.15
Matches are distributed among these distances:
41 16 0.04
42 9 0.02
43 5 0.01
44 75 0.17
45 11 0.02
46 33 0.07
47 180 0.40
48 100 0.22
49 15 0.03
50 2 0.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTGTATAAGG
Found at i:36912690 original size:139 final size:139
Alignment explanation
Indices: 36912419--36912725 Score: 560
Period size: 139 Copynumber: 2.2 Consensus size: 139
36912409 GTTAAGTTGT
36912419 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTGTATAAGTGCTACTGTATGTCCCAG
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTGTATAAGTGCTACTGTATGTCCCAG
36912484 ACATGTCTTACACTAGCACGAAGCTTAGCCGATGCATGTCCCAGACACGTCTTACATTGGCTACC
64 ACATGTCTTACACTAGCACGAAGCTTAGCCGATGCATGTCCCAGACACGTCTTACATTGGCTACC
36912549 ATCATTGAGGC
129 ATCATTGAGGC
*
36912560 CGATGCATGTCCTAGACATGTCTTACACTAGCTCTCGTGTATAAGTGCTACTGTATGTCCCAGAC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTGTATAAGTGCTACTGTATGTCCCAGAC
*
36912625 ATGTCTTACACTAGCACGAAGCTTAGTCGATGCATGTCCCAGACACGTCTTACATTGGCTACCAT
66 ATGTCTTACACTAGCACGAAGCTTAGCCGATGCATGTCCCAGACACGTCTTACATTGGCTACCAT
*
36912690 CATTGAGGT
131 CATTGAGGC
*
36912699 CGATGCATGTCCCAGACACGTCTTACA
1 CGATGCATGTCCCAGACATGTCTTACA
36912726 TTGGCTACCA
Statistics
Matches: 161, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
139 143 0.89
140 13 0.08
141 5 0.03
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (139 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTGTATAAGTGCTACTGTATGTCCCAGAC
ATGTCTTACACTAGCACGAAGCTTAGCCGATGCATGTCCCAGACACGTCTTACATTGGCTACCAT
CATTGAGGC
Found at i:36912943 original size:186 final size:186
Alignment explanation
Indices: 36912511--36912970 Score: 737
Period size: 186 Copynumber: 2.5 Consensus size: 186
36912501 ACGAAGCTTA
36912511 GCCGATGCATGTCCCAGACACGTCTTACATTGGCTACCATCATTGAGGCCGATGCATGTCCTAGA
1 GCCGATGCATGTCCCAGACACGTCTTACATTGGCTACCATCATTGAGGCCGATGCATGTCCTAGA
*
36912576 CATGTCTTACACTAGCTCTCGTGTATAAGTGCTACTGTATGTCCCAGACATGTCTTACACTAGCA
66 CATGTCTTACACTAGCTCTCGTGTATAAGTGCTACTGTATGTCCCAAACATGTCTTACACTAGCA
* *
36912641 CGAAGCTTAGTCGATGCATGTCCCAGACACGTCTTACATTGGCTACCATCATTGAG
131 CGAAGCTTAGCCGATGCATGTCCCAGACACGTCTTACACTGGCTACCATCATTGAG
* *
36912697 GTCGATGCATGTCCCAGACACGTCTTACATTGGCTACCACCATTGAGGCCGATGCATGTCCTAGA
1 GCCGATGCATGTCCCAGACACGTCTTACATTGGCTACCATCATTGAGGCCGATGCATGTCCTAGA
36912762 CATGTCTTACACTAGCTCTCGTGTATAAGTGCTACTGTATGTCCCAAACATGTCTTACACTAGCA
66 CATGTCTTACACTAGCTCTCGTGTATAAGTGCTACTGTATGTCCCAAACATGTCTTACACTAGCA
*
36912827 TGAAGCTTAGCCGATGCATGTCCCAGACACGTCTTACACTGGCTACCATCATTGAG
131 CGAAGCTTAGCCGATGCATGTCCCAGACACGTCTTACACTGGCTACCATCATTGAG
* * * * * *
36912883 GCCGATGCATGTCCTAGACATGTCTTACACTGGC-ACTTATC-TCT-ACGCCGATGCCATGTCCC
1 GCCGATGCATGTCCCAGACACGTCTTACATTGGCTAC-CATCAT-TGAGGCCGATG-CATGTCCT
* *
36912945 AGACATGGTCTTACACTGGCTATCGT
63 AGACAT-GTCTTACACTAGCTCTCGT
36912971 AATGTGGCTG
Statistics
Matches: 254, Mismatches: 16, Indels: 7
0.92 0.06 0.03
Matches are distributed among these distances:
185 11 0.04
186 226 0.89
187 17 0.07
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (186 bp):
GCCGATGCATGTCCCAGACACGTCTTACATTGGCTACCATCATTGAGGCCGATGCATGTCCTAGA
CATGTCTTACACTAGCTCTCGTGTATAAGTGCTACTGTATGTCCCAAACATGTCTTACACTAGCA
CGAAGCTTAGCCGATGCATGTCCCAGACACGTCTTACACTGGCTACCATCATTGAG
Found at i:36912956 original size:139 final size:139
Alignment explanation
Indices: 36912699--36912961 Score: 377
Period size: 139 Copynumber: 1.9 Consensus size: 139
36912689 TCATTGAGGT
*
36912699 CGATGCATGTCCCAGACACGTCTTACATTGGCTACCACCATTGAGGCCGATGCATGTCCTAGACA
1 CGATGCATGTCCCAGACACGTCTTACACTGGCTACCACCATTGAGGCCGATGCATGTCCTAGACA
* * * * * *
36912764 TGTCTTACACTAGCTCTCGTGTATAAGTGCTACTGTATGTCCCAAACATGTCTTACACTAGCATG
66 TGTCTTACACTAGCACTCATCTATAAGTCCGACTGCATGTCCCAAACATGTCTTACACTAGCATG
36912829 AAGCTTAGC
131 AAGCTTAGC
*
36912838 CGATGCATGTCCCAGACACGTCTTACACTGGCTACCATCATTGAGGCCGATGCATGTCCTAGACA
1 CGATGCATGTCCCAGACACGTCTTACACTGGCTACCACCATTGAGGCCGATGCATGTCCTAGACA
* * * * *
36912903 TGTCTTACACTGGCACTTATCTCTACG-CCGA-TGCCATGTCCCAGACATGGTCTTACACT
66 TGTCTTACACTAGCACTCATCTATAAGTCCGACTG-CATGTCCCAAACAT-GTCTTACACT
36912962 GGCTATCGTA
Statistics
Matches: 109, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
137 2 0.02
138 14 0.13
139 93 0.85
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (139 bp):
CGATGCATGTCCCAGACACGTCTTACACTGGCTACCACCATTGAGGCCGATGCATGTCCTAGACA
TGTCTTACACTAGCACTCATCTATAAGTCCGACTGCATGTCCCAAACATGTCTTACACTAGCATG
AAGCTTAGC
Found at i:36915168 original size:46 final size:47
Alignment explanation
Indices: 36915081--36915183 Score: 145
Period size: 46 Copynumber: 2.2 Consensus size: 47
36915071 TACATAAATT
* *
36915081 ATTCCTGTCTCCAATGCCATATATATATAATATGGGCTTACATGGCTC
1 ATTCCTGTCTCCAAAGCCA-ATATATATAATATGGACTTACATGGCTC
* *
36915129 ATTCCTGTCTCCAAAGCC-ATATATCTAATATGGATTTACATGGCTC
1 ATTCCTGTCTCCAAAGCCAATATATATAATATGGACTTACATGGCTC
*
36915175 ATTTCTGTC
1 ATTCCTGTC
36915184 CTGCCCTGTC
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
46 33 0.66
48 17 0.34
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (47 bp):
ATTCCTGTCTCCAAAGCCAATATATATAATATGGACTTACATGGCTC
Found at i:36916781 original size:30 final size:30
Alignment explanation
Indices: 36916747--36916807 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
36916737 TCCTTTACTC
*
36916747 AAAC-TTTGCAAAAATTACATTTTTGCCCCT
1 AAACTTTTGC-AAAATTACACTTTTGCCCCT
* *
36916777 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGCAAAATTACACTTTTGCCCCT
36916807 A
1 A
36916808 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACACTTTTGCCCCT
Found at i:36923785 original size:46 final size:47
Alignment explanation
Indices: 36923681--36923800 Score: 143
Period size: 46 Copynumber: 2.6 Consensus size: 47
36923671 TGTCTTCGAC
** * *
36923681 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCA-ATATATATAAT
* * * *
36923729 ATGGGCTTACATGGCTCATTCTTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATAAT
*
36923775 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
36923801 CTGTCCTGTC
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
46 32 0.52
48 29 0.48
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.37
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATAAT
Found at i:36924170 original size:30 final size:30
Alignment explanation
Indices: 36924136--36924196 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
36924126 TCCTTTACTC
*
36924136 AAAC-TTTGCAAAAATTACATTTTTGCCCCT
1 AAACTTTTGC-AAAATTACACTTTTGCCCCT
* *
36924166 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGCAAAATTACACTTTTGCCCCT
36924196 A
1 A
36924197 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACACTTTTGCCCCT
Found at i:36959838 original size:43 final size:43
Alignment explanation
Indices: 36959789--36959939 Score: 169
Period size: 43 Copynumber: 3.5 Consensus size: 43
36959779 GATTACCGAG
* * *
36959789 ATGTGATTACATGTAAGACCATGTCTGGGACGTTGGCATTGTGT
1 ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGT-T
36959833 -TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTT
1 ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTT
* * * * * *
36959875 ATATGATTTCGTGTAAGACCATGTTTGGGAAATTAGCATCGAT
1 ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTT
* * * *
36959918 ATGTTATAACATGCAAGACCAT
1 ATGTGATTACGTGTAAGACCAT
36959940 ATCTAGGATA
Statistics
Matches: 91, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
42 1 0.01
43 90 0.99
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (43 bp):
ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTT
Found at i:36961298 original size:8 final size:8
Alignment explanation
Indices: 36961285--36961322 Score: 60
Period size: 8 Copynumber: 4.9 Consensus size: 8
36961275 CTAAATACCG
36961285 TTCTTCTC
1 TTCTTCTC
36961293 TTCTTCTC
1 TTCTTCTC
*
36961301 ATCTTCTC
1 TTCTTCTC
36961309 TTCTTCTC
1 TTCTTCTC
36961317 TT-TTCT
1 TTCTTCT
36961323 GTGCTTGACT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
7 4 0.14
8 24 0.86
ACGTcount: A:0.03, C:0.34, G:0.00, T:0.63
Consensus pattern (8 bp):
TTCTTCTC
Found at i:36964221 original size:12 final size:12
Alignment explanation
Indices: 36964204--36964229 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
36964194 AAATTATTCT
36964204 TTGTTATTATTA
1 TTGTTATTATTA
36964216 TTGTTATTATTA
1 TTGTTATTATTA
36964228 TT
1 TT
36964230 ATTTATTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69
Consensus pattern (12 bp):
TTGTTATTATTA
Found at i:36964565 original size:36 final size:36
Alignment explanation
Indices: 36964518--36964587 Score: 122
Period size: 36 Copynumber: 1.9 Consensus size: 36
36964508 ATGCCTAAAA
*
36964518 GCCTAGCTATCATTTCATTCTTCTTCATCTTCTTAT
1 GCCTAGCTATCATTTCATTCTTCCTCATCTTCTTAT
*
36964554 GCCTAGCTATCATTTCCTTCTTCCTCATCTTCTT
1 GCCTAGCTATCATTTCATTCTTCCTCATCTTCTT
36964588 TCTCCACTGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.14, C:0.31, G:0.06, T:0.49
Consensus pattern (36 bp):
GCCTAGCTATCATTTCATTCTTCCTCATCTTCTTAT
Found at i:36964686 original size:12 final size:12
Alignment explanation
Indices: 36964669--36964705 Score: 74
Period size: 12 Copynumber: 3.1 Consensus size: 12
36964659 GTGTAAGTGA
36964669 TCTTGATGATTT
1 TCTTGATGATTT
36964681 TCTTGATGATTT
1 TCTTGATGATTT
36964693 TCTTGATGATTT
1 TCTTGATGATTT
36964705 T
1 T
36964706 TACATTTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.59
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:36965060 original size:30 final size:30
Alignment explanation
Indices: 36965021--36965081 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
36965011 ATCGATTTTC
* * *
36965021 AGGCATAGGGGTAAAATGGTTATTTTGCCA
1 AGGCATAGGGGCAAAATGGTCATTTTACCA
*
36965051 AGGCCTAGGGGCAAAATGGTCATTTTACCA
1 AGGCATAGGGGCAAAATGGTCATTTTACCA
36965081 A
1 A
36965082 AGTTGTGAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (30 bp):
AGGCATAGGGGCAAAATGGTCATTTTACCA
Found at i:36965545 original size:46 final size:46
Alignment explanation
Indices: 36965424--36965690 Score: 175
Period size: 47 Copynumber: 5.7 Consensus size: 46
36965414 GGTGTTTCGT
* ** **
36965424 GTGCCAGTGTAAGACATGTCTGGGACATGCTTTGGCCACATTATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACAAGATGA
* * *
36965470 GAGCTAGTGTAAGGACATGTCTGGAACATGCATCAG-CACAAAGATGA
1 GTGCCAGTGTAA-GACATGTCTGGGACATGCATCAGCCAC-AAGATGA
* * * *
36965517 GTGCCAGAGTAAGACATGTCTGGGACATGCATCGGCCTCAACA-GA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACAAGATGA
* ** * * * *
36965562 GATAGCTAGTGTAAGATTTGGCTGGGACACGCATCAG-C-TAAGA-GTT
1 G-T-GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACAAGATG-A
* * * * * **
36965608 GTGCTAGTGTAAGACATGTCTCGGACATGCACCAGTACGCATTTATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCAG-CCACA-AGATGA
*
36965656 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
36965691 GATAATATAT
Statistics
Matches: 169, Mismatches: 39, Indels: 22
0.73 0.17 0.10
Matches are distributed among these distances:
44 27 0.16
45 8 0.05
46 41 0.24
47 62 0.37
48 13 0.08
49 14 0.08
50 4 0.02
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.23
Consensus pattern (46 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACAAGATGA
Found at i:36965596 original size:93 final size:91
Alignment explanation
Indices: 36965424--36965638 Score: 229
Period size: 93 Copynumber: 2.3 Consensus size: 91
36965414 GGTGTTTCGT
* * **
36965424 GTGCCAGTGTAAGACATGTCTGGGACATGCTTTGGCCACATTATGAGAGCTAGTGTAAGGACATG
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAACATGAGAGCTAGTGTAAGGACATG
* *
36965489 TCTGGAACATGCATCAGCACAA-AGATGA
66 GCTGGAACACGCATCAGCA-AAGAG-T-A
* * **
36965517 GTGCCAGAGTAAGACATGTCTGGGACATGCATCGGCCTCAACA-GAGATAGCTAGTGTAA-GATT
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAACATGAG--AGCTAGTGTAAGGACA
* * *
36965580 TGGCTGGGACACGCATCAGCTAAGAGTT
64 TGGCTGGAACACGCATCAGCAAAGAGTA
* *
36965608 GTGCTAGTGTAAGACATGTCTCGGACATGCA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCA
36965639 CCAGTACGCA
Statistics
Matches: 103, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
91 28 0.27
92 6 0.06
93 58 0.56
94 11 0.11
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (91 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAACATGAGAGCTAGTGTAAGGACATG
GCTGGAACACGCATCAGCAAAGAGTA
Found at i:36972516 original size:93 final size:93
Alignment explanation
Indices: 36972388--36972559 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
36972378 GCCCATAAGT
* * *
36972388 GAACTCGGGCTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAAAGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
36972453 CGACCTCGGATGCCTAGTTACATCTCTC
66 CGACCTCGGATGCCTAGTTACATCTCTC
* *
36972481 GAACTTGGACTCAACTCAAAGAGTTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAAAGAGCTCAGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
**
36972545 ACGAGTTCGGATGCC
65 ACGACCTCGGATGCC
36972560 CAAATATCCT
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAAAGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGACCTCGGATGCCTAGTTACATCTCTC
Found at i:36972555 original size:46 final size:45
Alignment explanation
Indices: 36972380--36972554 Score: 174
Period size: 46 Copynumber: 3.8 Consensus size: 45
36972370 TGTAACCCGC
* *
36972380 CCATAAGTGAACTCGGGCTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGCATTCGCAT
* *
36972426 CCATAAGTGAACTCGGACTCAACTCAACGACCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* *** * * *
36972472 ACATCTCTCGAACTTGGACTCAACTCAAAGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
*
36972519 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
36972555 ATGCCCAAAT
Statistics
Matches: 103, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 63 0.61
47 29 0.28
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:36975520 original size:220 final size:221
Alignment explanation
Indices: 36974969--36975859 Score: 1723
Period size: 220 Copynumber: 4.0 Consensus size: 221
36974959 GAAATGTTCT
36974969 TCGAGTTGGGCCAGATGAGTCAGATAACTTGTCTGTGGTAATATCGTCTTTGGTAGCCGAAAGAT
1 TCGAGTTGGGCCAGATGAGTCAGATAACTTGTCTGTGGTAATATCGTCTTTGGTAGCCGAAAGAT
*
36975034 ATTTGAGAAAAGGTTATGAAGCTTATCTAGCTTTTGTGCTGAATATCCAAGTGTCAAAGTCGAAG
66 ATTTGAGAAAAGGTTATGAAGCTTATCTAGCTTTTGTGCTGAATACCCAAGTGTCAAAGTCGAAG
*
36975099 ATTGAGTCAGTACCAGTGGTTTGTGAGTTTATAGACGTATTTCTGGAGGAGTTACCAGGGTTACC
131 ATTGAGTCAGTACCAGTGGTTTGTGAGTTTATAGACGTCTTTCTGGAGGAGTTACCAGGGTTACC
36975164 CCCAGAAAGAAAGGTTGAGTTTGGTA
196 CCCAGAAAGAAAGGTTGAGTTTGGTA
36975190 TCGAGTTGGGCCAGATGAGTCAGATAACTTGTCTGTGGTAATATCGTCTTTGGTAGCCGAAAGAT
1 TCGAGTTGGGCCAGATGAGTCAGATAACTTGTCTGTGGTAATATCGTCTTTGGTAGCCGAAAGAT
36975255 ATTTGAGAAAAGGTTATGAAGCTTATCTAGCTTTTGTGCTGAATACCCAAGTGTCAAAGTCGAAG
66 ATTTGAGAAAAGGTTATGAAGCTTATCTAGCTTTTGTGCTGAATACCCAAGTGTCAAAGTCGAAG
36975320 ATTGAGTCAGTACCAGTGGTTTGTGAGTTTATAGACGTCTTTCTGGAGGAGTTACCAGGGTTA-C
131 ATTGAGTCAGTACCAGTGGTTTGTGAGTTTATAGACGTCTTTCTGGAGGAGTTACCAGGGTTACC
*
36975384 CCTAGAAAGAAAGGTTGAGTTTGGTA
196 CCCAGAAAGAAAGGTTGAGTTTGGTA
36975410 TCGAGTTGGGCCAGATGAGTCAGATAACTTGTCTGTGGTAATATCGTCTTTGGTAGCCGAAAGAT
1 TCGAGTTGGGCCAGATGAGTCAGATAACTTGTCTGTGGTAATATCGTCTTTGGTAGCCGAAAGAT
36975475 ATTTGAGAAAAGGTTATGAAGCTTATCTAGCTTTTGTGCTGAATACCCAAGTGTCAAAGTCGAAG
66 ATTTGAGAAAAGGTTATGAAGCTTATCTAGCTTTTGTGCTGAATACCCAAGTGTCAAAGTCGAAG
36975540 ATTGAGTCAGTACCAGTGGTTTGTGAGTTTATAGACGTCTTTCTGGAGGAGTTACCAGGGTTA-C
131 ATTGAGTCAGTACCAGTGGTTTGTGAGTTTATAGACGTCTTTCTGGAGGAGTTACCAGGGTTACC
*
36975604 CCCAGAATGAAAGGTTGAGTTTGGTA
196 CCCAGAAAGAAAGGTTGAGTTTGGTA
36975630 TCGAGTTGGGCCAGATGAGTCAGATAACTTGTCTGTGGTAATATCGTCTTTGGTAGCCGAAAGAT
1 TCGAGTTGGGCCAGATGAGTCAGATAACTTGTCTGTGGTAATATCGTCTTTGGTAGCCGAAAGAT
*
36975695 ATTTAAGAAAAGGTTATGAAGCTTATCTAGCTTTTGTGCTGAATACCCAAGTGTCAAAGTCGAAG
66 ATTTGAGAAAAGGTTATGAAGCTTATCTAGCTTTTGTGCTGAATACCCAAGTGTCAAAGTCGAAG
36975760 ATTGAGTCAGTACCAGTGGTTTGTGAGTTTATAGACGTCTTTCTGGAGGAGTTACCAGGGTTACC
131 ATTGAGTCAGTACCAGTGGTTTGTGAGTTTATAGACGTCTTTCTGGAGGAGTTACCAGGGTTACC
36975825 CCCAGAAAGAAAGGTTGAGTTTGGTA
196 CCCAGAAAGAAAGGTTGAGTTTGGTA
36975851 TCGAGTTGG
1 TCGAGTTGG
36975860 CTCCTGGTAC
Statistics
Matches: 662, Mismatches: 7, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
220 436 0.66
221 226 0.34
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (221 bp):
TCGAGTTGGGCCAGATGAGTCAGATAACTTGTCTGTGGTAATATCGTCTTTGGTAGCCGAAAGAT
ATTTGAGAAAAGGTTATGAAGCTTATCTAGCTTTTGTGCTGAATACCCAAGTGTCAAAGTCGAAG
ATTGAGTCAGTACCAGTGGTTTGTGAGTTTATAGACGTCTTTCTGGAGGAGTTACCAGGGTTACC
CCCAGAAAGAAAGGTTGAGTTTGGTA
Found at i:36975834 original size:441 final size:441
Alignment explanation
Indices: 36974969--36975859 Score: 1721
Period size: 441 Copynumber: 2.0 Consensus size: 441
36974959 GAAATGTTCT
36974969 TCGAGTTGGGCCAGATGAGTCAGATAACTTGTCTGTGGTAATATCGTCTTTGGTAGCCGAAAGAT
1 TCGAGTTGGGCCAGATGAGTCAGATAACTTGTCTGTGGTAATATCGTCTTTGGTAGCCGAAAGAT
*
36975034 ATTTGAGAAAAGGTTATGAAGCTTATCTAGCTTTTGTGCTGAATATCCAAGTGTCAAAGTCGAAG
66 ATTTGAGAAAAGGTTATGAAGCTTATCTAGCTTTTGTGCTGAATACCCAAGTGTCAAAGTCGAAG
36975099 ATTGAGTCAGTACCAGTGGTTTGTGAGTTTATAGACGTATTTCTGGAGGAGTTACCAGGGTTACC
131 ATTGAGTCAGTACCAGTGGTTTGTGAGTTTATAGACGTATTTCTGGAGGAGTTACCAGGGTTACC
36975164 CCCAGAAAGAAAGGTTGAGTTTGGTATCGAGTTGGGCCAGATGAGTCAGATAACTTGTCTGTGGT
196 CCCAGAAAGAAAGGTTGAGTTTGGTATCGAGTTGGGCCAGATGAGTCAGATAACTTGTCTGTGGT
*
36975229 AATATCGTCTTTGGTAGCCGAAAGATATTTGAGAAAAGGTTATGAAGCTTATCTAGCTTTTGTGC
261 AATATCGTCTTTGGTAGCCGAAAGATATTTAAGAAAAGGTTATGAAGCTTATCTAGCTTTTGTGC
36975294 TGAATACCCAAGTGTCAAAGTCGAAGATTGAGTCAGTACCAGTGGTTTGTGAGTTTATAGACGTC
326 TGAATACCCAAGTGTCAAAGTCGAAGATTGAGTCAGTACCAGTGGTTTGTGAGTTTATAGACGTC
*
36975359 TTTCTGGAGGAGTTACCAGGGTTACCCTAGAAAGAAAGGTTGAGTTTGGTA
391 TTTCTGGAGGAGTTACCAGGGTTACCCCAGAAAGAAAGGTTGAGTTTGGTA
36975410 TCGAGTTGGGCCAGATGAGTCAGATAACTTGTCTGTGGTAATATCGTCTTTGGTAGCCGAAAGAT
1 TCGAGTTGGGCCAGATGAGTCAGATAACTTGTCTGTGGTAATATCGTCTTTGGTAGCCGAAAGAT
36975475 ATTTGAGAAAAGGTTATGAAGCTTATCTAGCTTTTGTGCTGAATACCCAAGTGTCAAAGTCGAAG
66 ATTTGAGAAAAGGTTATGAAGCTTATCTAGCTTTTGTGCTGAATACCCAAGTGTCAAAGTCGAAG
*
36975540 ATTGAGTCAGTACCAGTGGTTTGTGAGTTTATAGACGTCTTTCTGGAGGAGTTACCAGGGTTA-C
131 ATTGAGTCAGTACCAGTGGTTTGTGAGTTTATAGACGTATTTCTGGAGGAGTTACCAGGGTTACC
*
36975604 CCCAGAATGAAAGGTTGAGTTTGGTATCGAGTTGGGCCAGATGAGTCAGATAACTTGTCTGTGGT
196 CCCAGAAAGAAAGGTTGAGTTTGGTATCGAGTTGGGCCAGATGAGTCAGATAACTTGTCTGTGGT
36975669 AATATCGTCTTTGGTAGCCGAAAGATATTTAAGAAAAGGTTATGAAGCTTATCTAGCTTTTGTGC
261 AATATCGTCTTTGGTAGCCGAAAGATATTTAAGAAAAGGTTATGAAGCTTATCTAGCTTTTGTGC
36975734 TGAATACCCAAGTGTCAAAGTCGAAGATTGAGTCAGTACCAGTGGTTTGTGAGTTTATAGACGTC
326 TGAATACCCAAGTGTCAAAGTCGAAGATTGAGTCAGTACCAGTGGTTTGTGAGTTTATAGACGTC
36975799 TTTCTGGAGGAGTTACCAGGGTTACCCCCAGAAAGAAAGGTTGAGTTTGGTA
391 TTTCTGGAGGAGTTACCAGGGTTA-CCCCAGAAAGAAAGGTTGAGTTTGGTA
36975851 TCGAGTTGG
1 TCGAGTTGG
36975860 CTCCTGGTAC
Statistics
Matches: 444, Mismatches: 5, Indels: 2
0.98 0.01 0.00
Matches are distributed among these distances:
440 218 0.49
441 226 0.51
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (441 bp):
TCGAGTTGGGCCAGATGAGTCAGATAACTTGTCTGTGGTAATATCGTCTTTGGTAGCCGAAAGAT
ATTTGAGAAAAGGTTATGAAGCTTATCTAGCTTTTGTGCTGAATACCCAAGTGTCAAAGTCGAAG
ATTGAGTCAGTACCAGTGGTTTGTGAGTTTATAGACGTATTTCTGGAGGAGTTACCAGGGTTACC
CCCAGAAAGAAAGGTTGAGTTTGGTATCGAGTTGGGCCAGATGAGTCAGATAACTTGTCTGTGGT
AATATCGTCTTTGGTAGCCGAAAGATATTTAAGAAAAGGTTATGAAGCTTATCTAGCTTTTGTGC
TGAATACCCAAGTGTCAAAGTCGAAGATTGAGTCAGTACCAGTGGTTTGTGAGTTTATAGACGTC
TTTCTGGAGGAGTTACCAGGGTTACCCCAGAAAGAAAGGTTGAGTTTGGTA
Found at i:36978737 original size:20 final size:20
Alignment explanation
Indices: 36978712--36978760 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
36978702 CACAGATCCG
36978712 AAAAGCCTAAAATAATGCCC
1 AAAAGCCTAAAATAATGCCC
* *
36978732 AAAAGCCTAAAATAGTGCCT
1 AAAAGCCTAAAATAATGCCC
36978752 AAAAGCCTA
1 AAAAGCCTA
36978761 GCTATCATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.49, C:0.22, G:0.12, T:0.16
Consensus pattern (20 bp):
AAAAGCCTAAAATAATGCCC
Found at i:36979691 original size:47 final size:44
Alignment explanation
Indices: 36979590--36979756 Score: 131
Period size: 47 Copynumber: 3.7 Consensus size: 44
36979580 TTCGTGTGCC
* * * *
36979590 AGTGTAAGGCATGTCTGGGACATGGCATCGGC-ACAGAGATGAGTGCC
1 AGTGTAAGACATGTCTGGGACAT-GCATCAGCTA-AAAGATGA--GCT
* **
36979637 AGAGTAAGACATGTCTGGGACATGCATTGGCCTCGACAAAGAT-AGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAG-CT--A-AAAGATGAGCT
** * * * *
36979684 AGTGTAAGATGTGGCTGGGACATGCATCAGCTAAGAGTTGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCTAAAAGATGAGCT
36979728 AGTGTAAGACATGTCTGGGACATGCATCA
1 AGTGTAAGACATGTCTGGGACATGCATCA
36979757 ATATGCATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
43 4 0.04
44 30 0.31
46 8 0.08
47 48 0.49
49 1 0.01
50 7 0.07
ACGTcount: A:0.28, C:0.17, G:0.32, T:0.23
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCTAAAAGATGAGCT
Found at i:36981460 original size:25 final size:25
Alignment explanation
Indices: 36981432--36981481 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
36981422 ATACATAACC
36981432 TATTTCTAAAAAGTTTAAATAAAAT
1 TATTTCTAAAAAGTTTAAATAAAAT
*
36981457 TATTTTTAAAAAGTTTAAATAAAAT
1 TATTTCTAAAAAGTTTAAATAAAAT
36981482 AAATCATAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.52, C:0.02, G:0.04, T:0.42
Consensus pattern (25 bp):
TATTTCTAAAAAGTTTAAATAAAAT
Found at i:36987760 original size:26 final size:26
Alignment explanation
Indices: 36987731--36987806 Score: 84
Period size: 26 Copynumber: 2.9 Consensus size: 26
36987721 TTTCATCCTT
36987731 ATTTTACCCTTAGAAAAATTTTGACA
1 ATTTTACCCTTAGAAAAATTTTGACA
* *
36987757 ATTTTA-CCTATAGTAAAATTTTGACG
1 ATTTTACCCT-TAGAAAAATTTTGACA
* *
36987783 ATTTTTCCTCTT-GGAAAATTTTGA
1 ATTTTACC-CTTAGAAAAATTTTGA
36987807 GAAAATATGT
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
25 3 0.07
26 36 0.84
27 2 0.05
28 2 0.05
ACGTcount: A:0.33, C:0.13, G:0.11, T:0.43
Consensus pattern (26 bp):
ATTTTACCCTTAGAAAAATTTTGACA
Found at i:36989849 original size:47 final size:47
Alignment explanation
Indices: 36989777--36989918 Score: 225
Period size: 47 Copynumber: 3.0 Consensus size: 47
36989767 GTTGAATTTA
36989777 AAGCTTGTTAAA-TTGCTCTTAATATTTTCGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTTCGGATAAGTTACTTAGTT
36989823 AAGCTTGTTAAATTTGCTCTTAATA-TTTCTGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTTC-GGATAAGTTACTTAGTT
* * * *
36989870 AAGCTTGTTAAATTTTCCCTTATTATTTCCGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTTCGGATAAGTTACTTAGTT
36989917 AA
1 AA
36989919 AGAAAATTTT
Statistics
Matches: 89, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
46 16 0.18
47 70 0.79
48 3 0.03
ACGTcount: A:0.28, C:0.12, G:0.14, T:0.46
Consensus pattern (47 bp):
AAGCTTGTTAAATTTGCTCTTAATATTTTCGGATAAGTTACTTAGTT
Found at i:36990801 original size:43 final size:43
Alignment explanation
Indices: 36990708--36990883 Score: 185
Period size: 43 Copynumber: 4.0 Consensus size: 43
36990698 AATATCGCAC
* ** *
36990708 AATACTATTTGGGCCTTTAAGCCTAGCAGGCTATAATGCCGGTGA
1 AATACTATTCGGG-CTTCGAGCCTAGCAGGCGA-AATGCCGGTGA
* * *
36990753 AATACTATTCGGGCTTCGAGCCTTGTAGGCGAAATGTCGGTGA
1 AATACTATTCGGGCTTCGAGCCTAGCAGGCGAAATGCCGGTGA
* * * * *
36990796 GATACTATTAGAGCTTTCAAGCCTAGCAGGCTATAATGCCGGTGA
1 AATACTATTCGGGC-TTCGAGCCTAGCAGGCGA-AATGCCGGTGA
36990841 AATGA-TA-TCGGGCTTCGAGCCTAGCAGGCGAAATGCCGGTGA
1 AAT-ACTATTCGGGCTTCGAGCCTAGCAGGCGAAATGCCGGTGA
36990883 A
1 A
36990884 TGAATTCGGG
Statistics
Matches: 108, Mismatches: 20, Indels: 9
0.79 0.15 0.07
Matches are distributed among these distances:
42 12 0.11
43 37 0.34
44 32 0.30
45 26 0.24
46 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.26
Consensus pattern (43 bp):
AATACTATTCGGGCTTCGAGCCTAGCAGGCGAAATGCCGGTGA
Found at i:36990835 original size:88 final size:86
Alignment explanation
Indices: 36990722--36990882 Score: 261
Period size: 87 Copynumber: 1.8 Consensus size: 86
36990712 CTATTTGGGC
* *
36990722 CTTTAAGCCTAGCAGGCTATAATGCCGGTGAAAT-ACTATTCGGGCTTCGAGCCTTGTAGGCGAA
1 CTTTAAGCCTAGCAGGCTATAATGCCGGTGAAATGA-TA-TCGGGCTTCGAGCCTAGCAGGCGAA
*
36990786 ATGTCGGTGAGATACTATTAGAG
64 ATGCCGGTGAGATACTATTAGAG
36990809 CTTTCAAGCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGGCTTCGAGCCTAGCAGGCGAAA
1 CTTT-AAGCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGGCTTCGAGCCTAGCAGGCGAAA
36990874 TGCCGGTGA
65 TGCCGGTGA
36990883 ATGAATTCGG
Statistics
Matches: 69, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
87 36 0.52
88 32 0.46
89 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (86 bp):
CTTTAAGCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGGCTTCGAGCCTAGCAGGCGAAAT
GCCGGTGAGATACTATTAGAG
Found at i:36990906 original size:42 final size:41
Alignment explanation
Indices: 36990729--36990924 Score: 112
Period size: 43 Copynumber: 4.6 Consensus size: 41
36990719 GGCCTTTAAG
* * *
36990729 CCTAGCAGGCTATAATGCCGGTGAAAT-ACTATTCGGGCTTCGAG
1 CCTAGCAGGCGA-AATGCCGGTG-AATGA-TA-TCGGGCTTCAAA
* * * * * *
36990773 CCTTGTAGGCGAAATGTCGGTGAGAT-ACTATTAGAGCTTTCAAG
1 CCTAGCAGGCGAAATGCCGGTGA-ATGA-TA-TCGGGC-TTCAAA
* * *
36990817 CCTAGCAGGCTATAATGCCGGTGAAATGATATCGGGCTTCGAG
1 CCTAGCAGGCGA-AATGCCGGTG-AATGATATCGGGCTTCAAA
* *
36990860 CCTAGCAGGCGAAATGCCGGTGAATGA-ATTCGGGTTTTTAAA
1 CCTAGCAGGCGAAATGCCGGTGAATGATA-TCGGG-CTTCAAA
*
36990902 CCTAGCAGGCTG-AATGCGGGTGA
1 CCTAGCAGGC-GAAATGCCGGTGA
36990925 TTTGATAAAA
Statistics
Matches: 124, Mismatches: 20, Indels: 18
0.77 0.12 0.11
Matches are distributed among these distances:
40 1 0.01
41 10 0.08
42 34 0.27
43 37 0.30
44 27 0.22
45 13 0.10
46 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (41 bp):
CCTAGCAGGCGAAATGCCGGTGAATGATATCGGGCTTCAAA
Found at i:36993260 original size:13 final size:13
Alignment explanation
Indices: 36993227--36993253 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
36993217 AAATATCTCT
36993227 AGAAATTTTATGA
1 AGAAATTTTATGA
36993240 AGAAATTTTATGA
1 AGAAATTTTATGA
36993253 A
1 A
36993254 ATGATTTCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.37
Consensus pattern (13 bp):
AGAAATTTTATGA
Found at i:37003213 original size:43 final size:43
Alignment explanation
Indices: 37003152--37003299 Score: 110
Period size: 43 Copynumber: 3.5 Consensus size: 43
37003142 CAATGCTGAC
*
37003152 GTCCCAGAC-GTGGTCTTACATGTAATTCAATATCGATGCCTCT
1 GTCCCAGACAG-GGTCTTACATGTAATTCAATATCGATGCCTAT
** * *
37003195 GTCCCAGACAGGGTCTTACA-CAAAATCAGATA-CGATGCCAAAT
1 GTCCCAGACAGGGTCTTACATGTAATTCA-ATATCGATGCC-TAT
* * * * *
37003238 -TACCAGACATGGTCTTATATGTAAATCTC-A-ATCGAGGCCTGT
1 GTCCCAGACAGGGTCTTACATGT-AAT-TCAATATCGATGCCTAT
*
37003280 GTCCCAGACACGGTCTTACA
1 GTCCCAGACAGGGTCTTACA
37003300 CGATATCTCA
Statistics
Matches: 80, Mismatches: 17, Indels: 16
0.71 0.15 0.14
Matches are distributed among these distances:
42 30 0.38
43 45 0.56
44 3 0.04
45 2 0.03
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (43 bp):
GTCCCAGACAGGGTCTTACATGTAATTCAATATCGATGCCTAT
Found at i:37006701 original size:79 final size:78
Alignment explanation
Indices: 37006599--37006821 Score: 265
Period size: 79 Copynumber: 2.8 Consensus size: 78
37006589 GCTCCTCGTT
* *
37006599 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
37006664 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
*
37006679 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
*
37006742 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * * * *
37006757 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
37006820 GA
63 GA
37006822 CATCATTCAA
Statistics
Matches: 125, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
78 47 0.38
79 57 0.46
80 20 0.16
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:37006716 original size:39 final size:40
Alignment explanation
Indices: 37006599--37006821 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
37006589 GCTCCTCGTT
* *
37006599 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
37006639 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
37006679 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
37006718 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
37006757 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
37006798 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37006822 CATCATTCAA
Statistics
Matches: 166, Mismatches: 9, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
38 2 0.01
39 89 0.54
40 64 0.39
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:37007217 original size:13 final size:13
Alignment explanation
Indices: 37007199--37007223 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37007189 GGATGAGCAT
37007199 TTTTTTTTCTTTG
1 TTTTTTTTCTTTG
37007212 TTTTTTTTCTTT
1 TTTTTTTTCTTT
37007224 CTAGTTTCGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.08, G:0.04, T:0.88
Consensus pattern (13 bp):
TTTTTTTTCTTTG
Found at i:37013952 original size:79 final size:78
Alignment explanation
Indices: 37013850--37014072 Score: 265
Period size: 79 Copynumber: 2.8 Consensus size: 78
37013840 GCTCCTCGTT
* *
37013850 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
37013915 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
*
37013930 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
*
37013993 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * * * *
37014008 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
37014071 GA
63 GA
37014073 CATCATTCAA
Statistics
Matches: 125, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
78 47 0.38
79 57 0.46
80 20 0.16
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:37013967 original size:39 final size:40
Alignment explanation
Indices: 37013850--37014072 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
37013840 GCTCCTCGTT
* *
37013850 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
37013890 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
37013930 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
37013969 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
37014008 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
37014049 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37014073 CATCATTCAA
Statistics
Matches: 166, Mismatches: 9, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
38 2 0.01
39 89 0.54
40 64 0.39
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:37014468 original size:13 final size:13
Alignment explanation
Indices: 37014450--37014474 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37014440 GGATGAGCAT
37014450 TTTTTTTTCTTTG
1 TTTTTTTTCTTTG
37014463 TTTTTTTTCTTT
1 TTTTTTTTCTTT
37014475 CTAGTTTCGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.08, G:0.04, T:0.88
Consensus pattern (13 bp):
TTTTTTTTCTTTG
Found at i:37020578 original size:20 final size:21
Alignment explanation
Indices: 37020532--37020578 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
37020522 GTTGATTTCG
37020532 TACTTTGGCCCATTTTCTCCT
1 TACTTTGGCCCATTTTCTCCT
* *
37020553 T-TTTTGGCCCA-TTTCTCGT
1 TACTTTGGCCCATTTTCTCCT
37020572 TACTTTG
1 TACTTTG
37020579 ACTCTCTTGT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
19 8 0.36
20 13 0.59
21 1 0.05
ACGTcount: A:0.09, C:0.28, G:0.13, T:0.51
Consensus pattern (21 bp):
TACTTTGGCCCATTTTCTCCT
Found at i:37022859 original size:27 final size:27
Alignment explanation
Indices: 37022829--37023319 Score: 608
Period size: 27 Copynumber: 18.3 Consensus size: 27
37022819 TTAGTTTATC
37022829 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* ** *
37022856 AAATTACTAAAATACCGTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
37022883 AAATCACCAAAATACCCCTGATTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
37022910 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
37022937 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
37022964 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
37022991 AAATCACCAAAATACCCCTGATTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
37023018 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
37023045 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
37023072 AAATTACTAGAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
37023099 AAATCACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** ***
37023126 AAATTACCAAAATACCATTGGTTCACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
37023153 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
37023180 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
37023207 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
37023234 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
37023261 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
37023288 AAATTACC-AAA-ACCCCTGATTTGTT
1 AAATTACCAAAATACCCCTGGTTTGTA
37023313 AAATTAC
1 AAATTAC
37023320 TGAAATACAC
Statistics
Matches: 392, Mismatches: 72, Indels: 2
0.84 0.15 0.00
Matches are distributed among these distances:
25 18 0.05
26 3 0.01
27 371 0.95
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:37022894 original size:54 final size:54
Alignment explanation
Indices: 37022822--37023299 Score: 744
Period size: 54 Copynumber: 8.9 Consensus size: 54
37022812 GAATACTTTA
* * * *
37022822 GTTTATCAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCGTTG
1 GTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTG
*
37022876 GTTTATAAAATCACCAAAATACCCCT-GATTTGTAAAATTACCAAAATACCCTTG
1 GTTTATAAAATTACCAAAATACCCCTAG-TTTGTAAAATTACCAAAATACCCTTG
* *
37022930 GTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTG
1 GTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTG
*
37022984 GTTTATAAAATCACCAAAATACCCCT-GATTTGTAAAATTACCAAAATACCCTTG
1 GTTTATAAAATTACCAAAATACCCCTAG-TTTGTAAAATTACCAAAATACCCTTG
* * *
37023038 GTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAGAATACCCTTG
1 GTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTG
* *
37023092 GTTTATAAAATCACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCATTG
1 GTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTG
* * * *
37023146 GTTCACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTT
1 GTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTG
* *
37023200 GTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTA
1 GTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTG
*
37023254 GTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAA
1 GTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAA
37023300 CCCCTGATTT
Statistics
Matches: 389, Mismatches: 31, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
53 2 0.01
54 385 0.99
55 2 0.01
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.31
Consensus pattern (54 bp):
GTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTG
Found at i:37023349 original size:26 final size:26
Alignment explanation
Indices: 37023312--37023372 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
37023302 CCTGATTTGT
37023312 TAAATTACTGAAATACACTCGACCTG
1 TAAATTACTGAAATACACTCGACCTG
* *
37023338 TAAATTATTGAAATACACTCGACTTG
1 TAAATTACTGAAATACACTCGACCTG
37023364 TAAAATTAC
1 T-AAATTAC
37023373 CAAAGTACCC
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
26 25 0.81
27 6 0.19
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.31
Consensus pattern (26 bp):
TAAATTACTGAAATACACTCGACCTG
Found at i:37023435 original size:27 final size:27
Alignment explanation
Indices: 37023365--37023437 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
37023355 CTCGACTTGT
**
37023365 AAAATTACC-AAAGTACCCTTGATTTAC
1 AAAATTACCGAAA-TACCCTCAATTTAC
* ***
37023392 AGAATTACCGTTTTACCCTCAATTTAC
1 AAAATTACCGAAATACCCTCAATTTAC
37023419 AAAATTACCGAAATACCCT
1 AAAATTACCGAAATACCCT
37023438 TGTAGGGTAG
Statistics
Matches: 35, Mismatches: 10, Indels: 2
0.74 0.21 0.04
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.38, C:0.25, G:0.07, T:0.30
Consensus pattern (27 bp):
AAAATTACCGAAATACCCTCAATTTAC
Done.