Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 117 of 316
Found at i:37023457 original size:27 final size:27
Alignment explanation
Indices: 37023427--37023558 Score: 153
Period size: 27 Copynumber: 4.9 Consensus size: 27
37023417 ACAAAATTAC
*
37023427 CGAAATACCCTTGTAGGGTAGAAATGT
1 CGAAATACCCTTGTAGGGTAGAAATAT
37023454 CGAAATACCCTTGTAGGGTAGAAATAT
1 CGAAATACCCTTGTAGGGTAGAAATAT
* *
37023481 CGAAATACCCCTGTAGGGTAGAATTA-
1 CGAAATACCCTTGTAGGGTAGAAATAT
** * *
37023507 CTGAAATACTCC-TGTAAAGTAGAATTAC
1 C-GAAATAC-CCTTGTAGGGTAGAAATAT
*
37023535 CGAGATACCCTTGTAGGGTA-AAAT
1 CGAAATACCCTTGTAGGGTAGAAAT
37023559 TACCATTTTA
Statistics
Matches: 92, Mismatches: 9, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
26 6 0.07
27 83 0.90
28 3 0.03
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.26
Consensus pattern (27 bp):
CGAAATACCCTTGTAGGGTAGAAATAT
Found at i:37023485 original size:54 final size:55
Alignment explanation
Indices: 37023424--37023561 Score: 169
Period size: 54 Copynumber: 2.6 Consensus size: 55
37023414 TTTACAAAAT
**
37023424 TACCGAAATACCCTTGTAGGGTAGAAATGT-C-GAAATAC-CCTTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAAT-TACTGAAATACTCC-TGTAAAGTAGAAA
* * *
37023478 TATCGAAATACCCCTGTAGGGTAG-AATTACTGAAATACTCCTGTAAAGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAATTACTGAAATACTCCTGTAAAGTAGAAA
*
37023532 TACCGAGATACCCTTGTAGGGTA-AAATTAC
1 TACCGAAATACCCTTGTAGGGTAGAAATTAC
37023562 CATTTTACCC
Statistics
Matches: 72, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
52 1 0.01
53 4 0.06
54 65 0.90
55 2 0.03
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (55 bp):
TACCGAAATACCCTTGTAGGGTAGAAATTACTGAAATACTCCTGTAAAGTAGAAA
Found at i:37023985 original size:6 final size:6
Alignment explanation
Indices: 37023976--37024187 Score: 132
Period size: 6 Copynumber: 34.3 Consensus size: 6
37023966 TTGCATTCAC
* *
37023976 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
* * * *
37024026 ATTCTA ATTCTG ATTCTG -TTACCTA ATTCTG ATTCTG GTTCTG ATTTTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
37024075 ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TTACCTA ATTCTG ATTCTG
1 ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * * * * *
37024125 ATTCTG ATTTTG ATTCTG -TCACCTG ATTCTA ATTCTG ATTTTC ATTTTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
37024174 ATTCT- AGTTCTG AT
1 ATTCTG A-TTCTG AT
37024188 AATGTTTCTT
Statistics
Matches: 162, Mismatches: 24, Indels: 40
0.72 0.11 0.18
Matches are distributed among these distances:
5 12 0.07
6 125 0.77
7 16 0.10
8 9 0.06
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:37024007 original size:25 final size:25
Alignment explanation
Indices: 37023976--37024068 Score: 150
Period size: 25 Copynumber: 3.7 Consensus size: 25
37023966 TTGCATTCAC
*
37023976 ATTCTGATTCTGATTCTGTTACCTG
1 ATTCTGATTCTGATTCTGTTACCTA
*
37024001 ATACTGATTCTGATTCTGTTACCTA
1 ATTCTGATTCTGATTCTGTTACCTA
*
37024026 ATTCTAATTCTGATTCTGTTACCTA
1 ATTCTGATTCTGATTCTGTTACCTA
*
37024051 ATTCTGATTCTGGTTCTG
1 ATTCTGATTCTGATTCTG
37024069 ATTTTGATTC
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 62 1.00
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.47
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTTACCTA
Found at i:37024077 original size:62 final size:62
Alignment explanation
Indices: 37023998--37024164 Score: 271
Period size: 62 Copynumber: 2.7 Consensus size: 62
37023988 ATTCTGTTAC
* * *
37023998 CTGATACTGATTCTGATTCTGTTACCTAATTCTAATTCTGATTCTGTTACCTAATTCTGATT
1 CTGATTCTGATTTTGATTCTGTTACCTGATTCTAATTCTGATTCTGTTACCTAATTCTGATT
* * *
37024060 CTGGTTCTGATTTTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATT
1 CTGATTCTGATTTTGATTCTGTTACCTGATTCTAATTCTGATTCTGTTACCTAATTCTGATT
*
37024122 CTGATTCTGATTTTGATTCTGTCACCTGATTCTAATTCTGATT
1 CTGATTCTGATTTTGATTCTGTTACCTGATTCTAATTCTGATT
37024165 TTCATTTTGA
Statistics
Matches: 95, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 95 1.00
ACGTcount: A:0.20, C:0.19, G:0.14, T:0.48
Consensus pattern (62 bp):
CTGATTCTGATTTTGATTCTGTTACCTGATTCTAATTCTGATTCTGTTACCTAATTCTGATT
Found at i:37024096 original size:25 final size:25
Alignment explanation
Indices: 37024066--37024130 Score: 103
Period size: 25 Copynumber: 2.6 Consensus size: 25
37024056 GATTCTGGTT
* *
37024066 CTGATTTTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTAATA
*
37024091 CTGATTCTGATTCTGTTACCTAATT
1 CTGATTCTGATTCTGTTACCTAATA
37024116 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
37024131 ATTTTGATTC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.48
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTAATA
Found at i:37024164 original size:37 final size:37
Alignment explanation
Indices: 37024085--37024178 Score: 125
Period size: 37 Copynumber: 2.5 Consensus size: 37
37024075 ATTCTGTTAC
* * * *
37024085 CTGATACTGATTCTGATTCTGTTACCTAATTCTGATT
1 CTGATTCTGATTTTGATTCTGTCACCTAATTCTAATT
*
37024122 CTGATTCTGATTTTGATTCTGTCACCTGATTCTAATT
1 CTGATTCTGATTTTGATTCTGTCACCTAATTCTAATT
* *
37024159 CTGATTTTCATTTTGATTCT
1 CTGATTCTGATTTTGATTCT
37024179 AGTTCTGATA
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 50 1.00
ACGTcount: A:0.19, C:0.18, G:0.13, T:0.50
Consensus pattern (37 bp):
CTGATTCTGATTTTGATTCTGTCACCTAATTCTAATT
Found at i:37025928 original size:21 final size:21
Alignment explanation
Indices: 37025899--37025967 Score: 59
Period size: 21 Copynumber: 3.1 Consensus size: 21
37025889 ATAGGAATTA
37025899 TGTGATCTGAACTCATTGAGT
1 TGTGATCTGAACTCATTGAGT
* ** *
37025920 TGTGGTCTGAGTTCA-TGATAT
1 TGTGATCTGAACTCATTGA-GT
37025941 ATGTGACATCTGAACTCATTGAGT
1 -TGTG--ATCTGAACTCATTGAGT
37025965 TGT
1 TGT
37025968 AGTCTGATTT
Statistics
Matches: 35, Mismatches: 8, Indels: 8
0.69 0.16 0.16
Matches are distributed among these distances:
20 3 0.09
21 13 0.37
22 4 0.11
23 3 0.09
24 9 0.26
25 3 0.09
ACGTcount: A:0.23, C:0.13, G:0.25, T:0.39
Consensus pattern (21 bp):
TGTGATCTGAACTCATTGAGT
Found at i:37025959 original size:45 final size:45
Alignment explanation
Indices: 37025903--37025990 Score: 149
Period size: 45 Copynumber: 2.0 Consensus size: 45
37025893 GAATTATGTG
*
37025903 ATCTGAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGAC
1 ATCTGAACTCATTGAGTTGTAGTCTGAGTTCATGATATATGTGAC
* *
37025948 ATCTGAACTCATTGAGTTGTAGTCTGATTTCATGATGTATGTG
1 ATCTGAACTCATTGAGTTGTAGTCTGAGTTCATGATATATGTG
37025991 TTACATGTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.24, C:0.12, G:0.24, T:0.40
Consensus pattern (45 bp):
ATCTGAACTCATTGAGTTGTAGTCTGAGTTCATGATATATGTGAC
Found at i:37028369 original size:17 final size:17
Alignment explanation
Indices: 37028347--37028392 Score: 69
Period size: 15 Copynumber: 2.8 Consensus size: 17
37028337 GTTAAAATGG
*
37028347 TAATTATATAATTAAGT
1 TAATTATATAATTAACT
37028364 TAA-T-TATAATTAACT
1 TAATTATATAATTAACT
37028379 TAATTATATAATTA
1 TAATTATATAATTA
37028393 CCATTTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
15 13 0.50
16 2 0.08
17 11 0.42
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (17 bp):
TAATTATATAATTAACT
Found at i:37054620 original size:40 final size:40
Alignment explanation
Indices: 37054583--37054714 Score: 144
Period size: 40 Copynumber: 3.3 Consensus size: 40
37054573 GCTACTCGTT
**
37054583 CAAATGCCTTCGGGACATAGGCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCA
*
37054623 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * * * *
37054663 CCAATGCCTTCGGG-CTTAGCCCGAAATTAGTATCTC-CAA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGC-A
37054702 CAAATGCCTTCGG
1 CAAATGCCTTCGG
37054715 ATCTTAGTCC
Statistics
Matches: 81, Mismatches: 9, Indels: 5
0.85 0.09 0.05
Matches are distributed among these distances:
38 1 0.01
39 31 0.38
40 47 0.58
41 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:37054708 original size:39 final size:40
Alignment explanation
Indices: 37054611--37054714 Score: 140
Period size: 39 Copynumber: 2.6 Consensus size: 40
37054601 AGGCCGGTTA
* *
37054611 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAAAT
* *
37054651 TAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGAAAT
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAAAT
*
37054690 TAGTATCTC-CAACAAATGCCTTCGG
1 TAGTAACTCGC-ACAAATGCCTTCGG
37054715 ATCTTAGTCC
Statistics
Matches: 57, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
38 1 0.02
39 31 0.54
40 25 0.44
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (40 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAAAT
Found at i:37055603 original size:23 final size:22
Alignment explanation
Indices: 37055577--37055621 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
37055567 AATATATAGG
37055577 TCATATCA-ATACATCATGTGCAA
1 TCATAT-ATATACAT-ATGTGCAA
*
37055600 TCATATATATATATATGTGCAA
1 TCATATATATACATATGTGCAA
37055622 GAGCCGAATC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.36
Consensus pattern (22 bp):
TCATATATATACATATGTGCAA
Found at i:37058014 original size:27 final size:26
Alignment explanation
Indices: 37057922--37058014 Score: 107
Period size: 27 Copynumber: 3.5 Consensus size: 26
37057912 GACAGATAAG
* *
37057922 GAAAGCCTTTGTGGCATAATATGAAAA
1 GAAAGCCTTTGTGACGTAATATG-AAA
*
37057949 GATAA-CCTTTGTCACGTAATATGAAA
1 GA-AAGCCTTTGTGACGTAATATGAAA
* *
37057975 GAAAGCCTTTGTGACGTAAAATGAATT
1 GAAAGCCTTTGTGACGTAATATGAA-A
37058002 GAAAGCCTTTGTG
1 GAAAGCCTTTGTG
37058015 GCAAACCATG
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
25 2 0.04
26 23 0.40
27 30 0.53
28 2 0.04
ACGTcount: A:0.37, C:0.13, G:0.22, T:0.29
Consensus pattern (26 bp):
GAAAGCCTTTGTGACGTAATATGAAA
Found at i:37064808 original size:48 final size:48
Alignment explanation
Indices: 37064600--37065020 Score: 275
Period size: 48 Copynumber: 8.8 Consensus size: 48
37064590 AAAGGGTAAA
* * * *
37064600 ATGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATACATCG
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGACT-ACATA-ACCG
* * * * * *
37064650 GTGCCGATGCCATGTACCAGACATAGTCTTACATTGAC-ACATAGAACA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTACATA-ACCG
* * * * * * * **
37064698 ATACCGATGTCATGTTCCAAACATGGTTTTACACTGGCTCGCAT-ATTG
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGACT-ACATAACCG
** *
37064746 A-GGTGAATGCCATGTCCCAGACATGGTCTTACACTGACTTACATAA-CA
1 ATGCCG-ATGCCATGTCCCAGACATGGTCTTACACTGAC-TACATAACCG
* * * * ** * *
37064794 ATGCTGATGTCATGTTCCAAACATGGTCTTACGTTGGCTCGCATAAACCG
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGACT-ACAT-AACCG
* * * **
37064844 GTGCTGATGCCATGTCCCAGACATTGTCTTACACTGAC-ACA-AATTG
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTACATAACCG
* * *
37064890 AGGCCGATGCCATGTCCCAGACATGATCTTACACT-ACTCTCATAAACCG
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGACT-ACAT-AACCG
* * * * *
37064939 GTGCCGATGTCATGTCCCAAACATGGTCTTACATTGAC-ACAT-ATCG
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTACATAACCG
* * *
37064985 AGGCCAACGCCATGTCCCAGACATGGTCTTACACTG
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTG
37065021 GCTCTCATAT
Statistics
Matches: 280, Mismatches: 77, Indels: 32
0.72 0.20 0.08
Matches are distributed among these distances:
45 2 0.01
46 65 0.23
47 4 0.01
48 102 0.36
49 39 0.14
50 68 0.24
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (48 bp):
ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTACATAACCG
Found at i:37064968 original size:95 final size:97
Alignment explanation
Indices: 37064605--37065029 Score: 439
Period size: 96 Copynumber: 4.4 Consensus size: 97
37064595 GTAAAATGCT
* * *
37064605 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATACATCGGTGCCGATGCCATGTACCAG
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAACCGGTGCCGATGCCATGTCCCAG
* * * **
37064670 ACATAGTCTTACATTGACACATAGAACAATACC
66 ACATGGTCTTACACTGACACATA-ATCAAGGCC
* * * * * **** *
37064703 GATGTCATGTTCCAAACATGGTTTTACACTGGCTCGCATATTGAGGTG--AATGCCATGTCCCAG
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAACCGGTGCCGATGCCATGTCCCAG
* *
37064766 ACATGGTCTTACACTGACTTACATAA-CAATGCT
66 ACATGGTCTTACACTGAC--ACATAATCAAGGCC
* * * ** * *
37064799 GATGTCATGTTCCAAACATGGTCTTACGTTGGCTCGCATAAACCGGTGCTGATGCCATGTCCCAG
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAACCGGTGCCGATGCCATGTCCCAG
* **
37064864 ACATTGTCTTACACTGACACA-AATTGAGGCC
66 ACATGGTCTTACACTGACACATAATCAAGGCC
* * * *
37064895 GATGCCATGTCCCAGACATGATCTTACACT-ACTCTCATAAACCGGTGCCGATGTCATGTCCCAA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAACCGGTGCCGATGCCATGTCCCAG
* *
37064959 ACATGGTCTTACATTGACACAT-ATCGAGGCC
66 ACATGGTCTTACACTGACACATAATCAAGGCC
* *
37064990 AACGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA
37065030 TCGTCATTGT
Statistics
Matches: 274, Mismatches: 46, Indels: 16
0.82 0.14 0.05
Matches are distributed among these distances:
95 85 0.31
96 113 0.41
97 1 0.00
98 75 0.27
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (97 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAACCGGTGCCGATGCCATGTCCCAG
ACATGGTCTTACACTGACACATAATCAAGGCC
Found at i:37065753 original size:15 final size:15
Alignment explanation
Indices: 37065729--37065760 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
37065719 TTTGAGGTGG
*
37065729 TTTCATAAAAAATCC
1 TTTCAGAAAAAATCC
37065744 TTTCAGAAAAAATCC
1 TTTCAGAAAAAATCC
37065759 TT
1 TT
37065761 CCACAAAAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.44, C:0.19, G:0.03, T:0.34
Consensus pattern (15 bp):
TTTCAGAAAAAATCC
Found at i:37065768 original size:15 final size:15
Alignment explanation
Indices: 37065735--37065768 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
37065725 GTGGTTTCAT
* *
37065735 AAAAAATCCTTTCAG
1 AAAAAATCCTTCCAC
37065750 AAAAAATCCTTCCAC
1 AAAAAATCCTTCCAC
37065765 AAAA
1 AAAA
37065769 GTTGTTAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.53, C:0.24, G:0.03, T:0.21
Consensus pattern (15 bp):
AAAAAATCCTTCCAC
Found at i:37068193 original size:46 final size:46
Alignment explanation
Indices: 37068143--37068271 Score: 206
Period size: 46 Copynumber: 2.8 Consensus size: 46
37068133 TGATTGAGCA
*
37068143 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
37068189 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
37068235 -CCTGAGCTTGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
37068272 GCAGGTTACA
Statistics
Matches: 78, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
45 2 0.03
46 76 0.97
ACGTcount: A:0.19, C:0.20, G:0.29, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:37075253 original size:46 final size:46
Alignment explanation
Indices: 37075203--37075378 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
37075193 TGATTGAGCA
37075203 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
37075249 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
37075294 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGGACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
37075342 -CCTGAGCTTGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
37075379 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 60 0.55
47 29 0.27
48 3 0.03
50 4 0.04
51 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:37075359 original size:93 final size:93
Alignment explanation
Indices: 37075200--37075371 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
37075190 GGATGATTGA
*
37075200 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
37075265 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
37075293 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGGACG-CCTGAGCTTGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
37075357 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
37075372 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:37077973 original size:20 final size:21
Alignment explanation
Indices: 37077948--37077989 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
37077938 TTCTGATTTG
*
37077948 AGAAAATTA-TTATAAATTAT
1 AGAAAAATATTTATAAATTAT
*
37077968 AGAAAAATATTTATGAATTAT
1 AGAAAAATATTTATAAATTAT
37077989 A
1 A
37077990 ATTTATATGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (21 bp):
AGAAAAATATTTATAAATTAT
Found at i:37080795 original size:138 final size:138
Alignment explanation
Indices: 37080556--37080865 Score: 340
Period size: 138 Copynumber: 2.2 Consensus size: 138
37080546 CATTATGAGA
* **
37080556 GTCAGTGTAAGACCATGTCGAGGACATGGCATCGGCATTGAGACGAGTGCTAGTGTAAGACATGT
1 GTCAGTGTAAGACCATGTTG-GGACATGGCATCGGCACGGAGACGAGTGCTAGTGTAAGACATGT
* * * * * *
37080621 TTGGGACATACATCGACCTCGGGACGTAAGCCAGTGTAAGA-CATGTTTAGGACAT-GCATCGGC
65 CTGGGACATACATCGACCACAGCACGAAAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGC
37080684 TACGAGATGT
130 T-CGAGATGT
* * * *
37080694 GTCAGTGTAAGACCATGTATGGGACATGGCGTCGGCACGGATATGTGTGCTAGTGTAAGACATGT
1 GTCAGTGTAAGACCATGT-TGGGACATGGCATCGGCACGGAGACGAGTGCTAGTGTAAGACATGT
* * * * * *
37080759 CTGGGACATGCATC-AGCCACATCATGAAAGCTAGTGTAAGACCGTGTCTGGGACATGGCATCGG
65 CTGGGACATACATCGA-CCACAGCACGAAAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGG
* * *
37080823 GTTGATATGT
129 CTCGAGATGT
*
37080833 GTCAGTGTAAGACC-TGTCTGGGACACGGCATCG
1 GTCAGTGTAAGACCATGT-TGGGACATGGCATCG
37080866 ACACAGATGG
Statistics
Matches: 143, Mismatches: 25, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
137 1 0.01
138 102 0.71
139 32 0.22
140 8 0.06
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (138 bp):
GTCAGTGTAAGACCATGTTGGGACATGGCATCGGCACGGAGACGAGTGCTAGTGTAAGACATGTC
TGGGACATACATCGACCACAGCACGAAAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCT
CGAGATGT
Found at i:37080885 original size:94 final size:94
Alignment explanation
Indices: 37080697--37080870 Score: 230
Period size: 94 Copynumber: 1.9 Consensus size: 94
37080687 GAGATGTGTC
*
37080697 AGTGTAAGACCATGTATGGGACATGGCGTCGGCACGGATATGTGTGCTAGTGTAAGACATGTCTG
1 AGTGTAAGACCATGTATGGGACATGGCATCGGCACGGATATGTGTGCTAGTGTAAGACATGTCTG
* *
37080762 GGACATGCATCAGCCACATCATGAAAGCT
66 GGACAGGCATCAGACACATCATGAAAGCT
* * *** *
37080791 AGTGTAAGACCGTGTCTGGGACATGGCATCGG-GTTGATATGTGT-C-AGTGTAAGACCTGTCTG
1 AGTGTAAGACCATGTATGGGACATGGCATCGGCACGGATATGTGTGCTAGTGTAAGACATGTCTG
37080853 GGACACGGCATC-GACACA
66 GGACA-GGCATCAGACACA
37080871 GATGGACGAG
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
91 26 0.37
92 6 0.09
93 9 0.13
94 29 0.41
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.24
Consensus pattern (94 bp):
AGTGTAAGACCATGTATGGGACATGGCATCGGCACGGATATGTGTGCTAGTGTAAGACATGTCTG
GGACAGGCATCAGACACATCATGAAAGCT
Found at i:37084352 original size:42 final size:41
Alignment explanation
Indices: 37084236--37084386 Score: 126
Period size: 43 Copynumber: 3.6 Consensus size: 41
37084226 ACCTGAGATA
* * *
37084236 TCGTGTAAGACCGTGTCTGAGACACAGGCCTCG-ATTGAGATT
1 TCGTGTAAGACCATGTCTGGGACACAGGCATCGTATT--GATT
* * *
37084278 TAGGTATAAGACCATGTCTGGGAGATCA-GCATCGTATCTGATT
1 T-CGTGTAAGACCATGTCTGGGACA-CAGGCATCGTAT-TGATT
* *
37084321 TCGTGTAAGACCCTGTCTGGGACAAAGGCATCGATATTGAATT
1 TCGTGTAAGACCATGTCTGGGACACAGGCATCG-TATTG-ATT
* * *
37084364 ACATGTAAGACCATGTCCGGGAC
1 TCGTGTAAGACCATGTCTGGGAC
37084387 GTCGGCGTTG
Statistics
Matches: 87, Mismatches: 15, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
41 1 0.01
42 28 0.32
43 53 0.61
44 4 0.05
45 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.26
Consensus pattern (41 bp):
TCGTGTAAGACCATGTCTGGGACACAGGCATCGTATTGATT
Found at i:37085480 original size:6 final size:6
Alignment explanation
Indices: 37085471--37085562 Score: 57
Period size: 6 Copynumber: 14.8 Consensus size: 6
37085461 AACCAAAATG
* *
37085471 AGAATC AGAATC AGAATC AG-GTGAC AGAATC AGAATC AGAATC AG-GTGAC
1 AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC AGAAT--C
* *
37085521 AGAATC AGAACC A-ATATC AGGTAA-C AGAATC AAAATC AGAAT
1 AGAATC AGAATC AGA-ATC A-G-AATC AGAATC AGAATC AGAAT
37085563 GTGAATGCAA
Statistics
Matches: 67, Mismatches: 8, Indels: 22
0.69 0.08 0.23
Matches are distributed among these distances:
5 5 0.07
6 50 0.75
7 8 0.12
8 3 0.04
9 1 0.01
ACGTcount: A:0.48, C:0.16, G:0.20, T:0.16
Consensus pattern (6 bp):
AGAATC
Found at i:37085504 original size:25 final size:25
Alignment explanation
Indices: 37085471--37085562 Score: 141
Period size: 25 Copynumber: 3.7 Consensus size: 25
37085461 AACCAAAATG
37085471 AGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTGAC
37085496 AGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTGAC
* *
37085521 AGAATCAGAACCA-ATATCAGGTAAC
1 AGAATCAGAATCAGA-ATCAGGTGAC
*
37085546 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
37085563 GTGAATGCAA
Statistics
Matches: 61, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
24 1 0.02
25 59 0.97
26 1 0.02
ACGTcount: A:0.48, C:0.16, G:0.20, T:0.16
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTGAC
Found at i:37085718 original size:27 final size:27
Alignment explanation
Indices: 37085680--37085760 Score: 94
Period size: 27 Copynumber: 3.0 Consensus size: 27
37085670 AGCATGGCTG
* *
37085680 CCAGAAT-AGATATTGTGATAGAGTCA
1 CCAGAATCAGATATTGTGACAGAGCCA
37085706 CCAG-ATACAGATATTGTGACAGAGCCA
1 CCAGAAT-CAGATATTGTGACAGAGCCA
* * *
37085733 CCAGAATCAGATAATGTGGCAAAGCCA
1 CCAGAATCAGATATTGTGACAGAGCCA
37085760 C
1 C
37085761 TTAACAGAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
25 2 0.04
26 4 0.09
27 39 0.83
28 2 0.04
ACGTcount: A:0.38, C:0.20, G:0.22, T:0.20
Consensus pattern (27 bp):
CCAGAATCAGATATTGTGACAGAGCCA
Found at i:37085829 original size:20 final size:20
Alignment explanation
Indices: 37085804--37085851 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
37085794 CGAGTCTATA
37085804 ATCGGCACGAAGCCCACAAT
1 ATCGGCACGAAGCCCACAAT
37085824 ATCGGCACGAAGCCCACAAT
1 ATCGGCACGAAGCCCACAAT
*
37085844 AACGGCAC
1 ATCGGCAC
37085852 ACAGCCATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.35, C:0.35, G:0.21, T:0.08
Consensus pattern (20 bp):
ATCGGCACGAAGCCCACAAT
Found at i:37085872 original size:22 final size:22
Alignment explanation
Indices: 37085847--37085905 Score: 82
Period size: 22 Copynumber: 2.7 Consensus size: 22
37085837 CCACAATAAC
*
37085847 GGCACACAGCCATAAACAGGTT
1 GGCACAAAGCCATAAACAGGTT
***
37085869 GGCACAAAGCCATATGTAGGTT
1 GGCACAAAGCCATAAACAGGTT
37085891 GGCACAAAGCCATAA
1 GGCACAAAGCCATAA
37085906 TCAGAATAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.15
Consensus pattern (22 bp):
GGCACAAAGCCATAAACAGGTT
Found at i:37086471 original size:27 final size:27
Alignment explanation
Indices: 37086441--37086651 Score: 184
Period size: 27 Copynumber: 8.0 Consensus size: 27
37086431 TACCCCGCAA
* * *
37086441 GGGTATCTCGGTAATTCTACCCTATAG
1 GGGTATTTCAGTAATTCTACCCTACAG
*
37086468 GGGTATTTC-GATATTTCTACCCTACAG
1 GGGTATTTCAG-TAATTCTACCCTACAG
37086495 GGGTATTTCAGTAATTCTACCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
* *
37086522 GGGTATTTCAGTAACTCTACCCTATAG
1 GGGTATTTCAGTAATTCTACCCTACAG
*
37086549 GGGTATTTTAGTAA--C-ACCCT--AG
1 GGGTATTTCAGTAATTCTACCCTACAG
* ** * * ** *
37086571 GGGCAAAAT-GGTAATTTTACCCCGCAA
1 GGG-TATTTCAGTAATTCTACCCTACAG
* *
37086598 GGGTATCTCGGTAATTCTACCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
* *
37086625 GGGTATTTCAGTAATGCTAGCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
37086652 ATATGAGATT
Statistics
Matches: 150, Mismatches: 25, Indels: 18
0.78 0.13 0.09
Matches are distributed among these distances:
22 9 0.06
23 2 0.01
24 5 0.03
25 5 0.03
26 3 0.02
27 125 0.83
28 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (27 bp):
GGGTATTTCAGTAATTCTACCCTACAG
Found at i:37093012 original size:40 final size:40
Alignment explanation
Indices: 37092956--37093158 Score: 268
Period size: 40 Copynumber: 5.1 Consensus size: 40
37092946 CGGAATTCAA
* * *
37092956 CCGGATATAGCT-ACTCGCTCGAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
37092996 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
37093036 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
37093076 CCGGATATAATAACTCGCACAATTGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * * *
37093115 CC-AAAATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
37093155 CCGG
1 CCGG
37093159 TTATCATCCG
Statistics
Matches: 143, Mismatches: 16, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
38 2 0.01
39 31 0.22
40 110 0.77
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:37097596 original size:13 final size:13
Alignment explanation
Indices: 37097578--37097603 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
37097568 GGGATTTGTT
37097578 TTAACTAAACTAA
1 TTAACTAAACTAA
37097591 TTAACTAAACTAA
1 TTAACTAAACTAA
37097604 GAATGCACAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACTAAACTAA
Found at i:37102781 original size:21 final size:22
Alignment explanation
Indices: 37102755--37102797 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
37102745 TCAGAGTTGG
37102755 GGCCCCTG-TGCTGTTACTGGA
1 GGCCCCTGTTGCTGTTACTGGA
*
37102776 GGCCCCTGTTGCTGTTATTGGA
1 GGCCCCTGTTGCTGTTACTGGA
37102798 CTATAGCCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.09, C:0.26, G:0.33, T:0.33
Consensus pattern (22 bp):
GGCCCCTGTTGCTGTTACTGGA
Found at i:37108791 original size:57 final size:57
Alignment explanation
Indices: 37108730--37108848 Score: 238
Period size: 57 Copynumber: 2.1 Consensus size: 57
37108720 AATTTACATA
37108730 TATAACCTTAATGAAATAATATAAAAACTATATAATATATGCCTATAAAACCAATGG
1 TATAACCTTAATGAAATAATATAAAAACTATATAATATATGCCTATAAAACCAATGG
37108787 TATAACCTTAATGAAATAATATAAAAACTATATAATATATGCCTATAAAACCAATGG
1 TATAACCTTAATGAAATAATATAAAAACTATATAATATATGCCTATAAAACCAATGG
37108844 TATAA
1 TATAA
37108849 TTGCATTATA
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 62 1.00
ACGTcount: A:0.51, C:0.12, G:0.07, T:0.30
Consensus pattern (57 bp):
TATAACCTTAATGAAATAATATAAAAACTATATAATATATGCCTATAAAACCAATGG
Found at i:37109272 original size:17 final size:17
Alignment explanation
Indices: 37109250--37109297 Score: 87
Period size: 17 Copynumber: 2.8 Consensus size: 17
37109240 AGTTTACCTA
*
37109250 TGTGGGGCCCACATGCC
1 TGTGGGGCCCACACGCC
37109267 TGTGGGGCCCACACGCC
1 TGTGGGGCCCACACGCC
37109284 TGTGGGGCCCACAC
1 TGTGGGGCCCACAC
37109298 AACCCAATGC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.12, C:0.38, G:0.35, T:0.15
Consensus pattern (17 bp):
TGTGGGGCCCACACGCC
Found at i:37123422 original size:40 final size:40
Alignment explanation
Indices: 37123365--37123676 Score: 525
Period size: 40 Copynumber: 7.8 Consensus size: 40
37123355 CCAGCATGAT
* *
37123365 TGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
37123405 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACTAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
37123445 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
37123485 TGCTCTTCGGGACTTAGCCCGGATAGATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
37123525 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
37123565 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
37123605 TGCTCTTCGGGACTTAGCCTGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
37123645 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
37123677 CTCAATTCTT
Statistics
Matches: 256, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 256 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:37124830 original size:47 final size:47
Alignment explanation
Indices: 37124765--37124930 Score: 244
Period size: 47 Copynumber: 3.5 Consensus size: 47
37124755 TCTCATACAT
* *
37124765 ATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCACAC
1 ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* *
37124812 ATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACAT
1 ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* *
37124859 ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCAT
1 ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* *
37124906 ATATAC-TCATTCACATTCATCACAT
1 ATATGCAT-GTTCACATTCATCACAT
37124931 AAAATCCTAA
Statistics
Matches: 110, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
46 1 0.01
47 109 0.99
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
Found at i:37124857 original size:22 final size:22
Alignment explanation
Indices: 37124830--37124901 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
37124820 GCTCACATTC
37124830 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
37124852 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
37124876 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
37124899 ATC
1 ATC
37124902 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:37128862 original size:40 final size:40
Alignment explanation
Indices: 37128799--37129230 Score: 729
Period size: 40 Copynumber: 10.8 Consensus size: 40
37128789 CCAGCATGAT
* * * *
37128799 TGCTTTTCGGGATTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
37128839 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
37128879 TTCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
37128919 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
37128959 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
37128999 TGCTCTTCGGGACTTAGTCTGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
37129039 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
37129079 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
37129119 TGCTCTTCGGGACTTTGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
37129159 TGCTCTTCGGGACTTAGCCTGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
37129199 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
37129231 CTCAATTCTT
Statistics
Matches: 371, Mismatches: 21, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 371 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:37129268 original size:14 final size:14
Alignment explanation
Indices: 37129249--37129285 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
37129239 TTATGTACAT
37129249 ATACACATATAGCA
1 ATACACATATAGCA
37129263 ATACACATATAGCA
1 ATACACATATAGCA
37129277 ATACACATA
1 ATACACATA
37129286 AACATTTCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.51, C:0.22, G:0.05, T:0.22
Consensus pattern (14 bp):
ATACACATATAGCA
Found at i:37130569 original size:40 final size:40
Alignment explanation
Indices: 37130485--37130941 Score: 725
Period size: 40 Copynumber: 11.4 Consensus size: 40
37130475 CTAGGCACGA
* * * * *
37130485 AGCCCGAATACACGTCACCAGCATGATTGCTCTTCGGGATTT
1 AGCCCGGATACA--TCACTAGCACGAATGCTCTTCGGGACTT
* * * *
37130527 AGCACGGATATATCACTAGCACGAATGCTCTTTGGAACTT
1 AGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTT
*
37130567 AGCCCGGATACATCACTAGCACGAATTCTCTTCGGGACTT
1 AGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTT
*
37130607 AGTCCGGATACATCACTAGCACGAATGCTCTTCGGGACTT
1 AGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTT
37130647 AGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTT
1 AGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTT
37130687 AGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTT
1 AGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTT
* *
37130727 AGTCCAGATACATCACTAGCACGAATGCTCTTCGGGACTT
1 AGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTT
*
37130767 AGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTT
1 AGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTT
37130807 AGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTT
1 AGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTT
* *
37130847 TGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTT
1 AGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTT
* *
37130887 AGCCTGGATATATCACTAGCACGAATGCTCTTCGGGACTT
1 AGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTT
*
37130927 AGCCCGGATATATCA
1 AGCCCGGATACATCA
37130942 GTCTCAATTC
Statistics
Matches: 387, Mismatches: 28, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
40 378 0.98
42 9 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
AGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTT
Found at i:37130992 original size:45 final size:45
Alignment explanation
Indices: 37130926--37131019 Score: 161
Period size: 45 Copynumber: 2.1 Consensus size: 45
37130916 CTTCGGGACT
* * *
37130926 TAGCCCGGATATATCAGTCTCAATTCTTATGTACATATACACATA
1 TAGCCCAGATATATCACTCTCAATTCTCATGTACATATACACATA
37130971 TAGCCCAGATATATCACTCTCAATTCTCATGTACATATACACATA
1 TAGCCCAGATATATCACTCTCAATTCTCATGTACATATACACATA
37131016 TAGC
1 TAGC
37131020 AATACACATT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.34, C:0.24, G:0.10, T:0.32
Consensus pattern (45 bp):
TAGCCCAGATATATCACTCTCAATTCTCATGTACATATACACATA
Found at i:37132438 original size:37 final size:37
Alignment explanation
Indices: 37132257--37132430 Score: 258
Period size: 37 Copynumber: 4.7 Consensus size: 37
37132247 GCTCAGACGA
* * * * *
37132257 AATCTCCACAAGAAGTTATCGGTTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
37132294 AATCTCCACATGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
* *
37132331 ACTCCCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
* *
37132368 AATCCCCACACGTTGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
37132405 AATCTCCACACGTAGTCATCGGGTCT
1 AATCTCCACACGTAGTCATCGGGTCT
37132431 CATCCGGAAT
Statistics
Matches: 125, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 125 1.00
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:37132642 original size:50 final size:48
Alignment explanation
Indices: 37132588--37132769 Score: 285
Period size: 48 Copynumber: 3.8 Consensus size: 48
37132578 CATCGCCTAC
*
37132588 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATAT
* * *
37132638 ATATTTCACATT-GACCATTCGGCTTTACCACGTATGCATATCTCATAC
1 ATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCATAT
*
37132686 ATATTTCACATTAGCCATTCGACTTTACCACATATACATATCTCATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAT
37132734 ATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATA
37132770 TGCATGTTCA
Statistics
Matches: 121, Mismatches: 9, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
48 80 0.66
49 2 0.02
50 39 0.32
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAT
Found at i:37132774 original size:98 final size:97
Alignment explanation
Indices: 37132585--37132768 Score: 309
Period size: 98 Copynumber: 1.9 Consensus size: 97
37132575 GCACATCGCC
*
37132585 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCGACTTTACCACATATACATATCTCA-ATATATATTTCACATT
*
37132650 GACCATTCGGCTTTACCACGTATGCATATCTCA
65 GACCATTCGGCTTTACCACATATGCATATCTCA
*
37132683 TACATATTTCACATTAGCCATTCGACTTTACCACATATACATATCTC-ATATATATTTCACATT-
1 TACATATTTCACACTAGCCATTCGACTTTACCACATATACATATCTCAATATATATTTCACATTG
37132746 AGCCATTCGGCTTTACCACATAT
66 A-CCATTCGGCTTTACCACATAT
37132769 ATGCATGTTC
Statistics
Matches: 82, Mismatches: 3, Indels: 4
0.92 0.03 0.04
Matches are distributed among these distances:
95 1 0.01
96 36 0.44
98 45 0.55
ACGTcount: A:0.30, C:0.26, G:0.07, T:0.36
Consensus pattern (97 bp):
TACATATTTCACACTAGCCATTCGACTTTACCACATATACATATCTCAATATATATTTCACATTG
ACCATTCGGCTTTACCACATATGCATATCTCA
Found at i:37132802 original size:47 final size:47
Alignment explanation
Indices: 37132739--37132911 Score: 265
Period size: 47 Copynumber: 3.7 Consensus size: 47
37132729 CATATATATT
* * * *
37132739 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
37132786 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
37132833 TCACATTGGCCATTCGGCCTTATCACATATATGCAAGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
37132880 TCACATTGGCCATTCGGCCTTATCTCATATAT
1 TCACATTGGCCATTCGGCCTTATCACATATAT
37132912 ACTCATCCAC
Statistics
Matches: 114, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 114 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:37132859 original size:22 final size:22
Alignment explanation
Indices: 37132832--37132903 Score: 65
Period size: 22 Copynumber: 3.1 Consensus size: 22
37132822 GCTCACATTC
37132832 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * * *
37132854 ATCACATATATGCAAGTTC-ACATT
1 ATCACAT-T-GGCCA-TTCGGCCTT
37132878 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
37132901 ATC
1 ATC
37132904 TCATATATAC
Statistics
Matches: 37, Mismatches: 8, Indels: 10
0.67 0.15 0.18
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.25, C:0.29, G:0.14, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:37132923 original size:47 final size:45
Alignment explanation
Indices: 37132739--37132932 Score: 208
Period size: 47 Copynumber: 4.1 Consensus size: 45
37132729 CATATATATT
* * * * * *
37132739 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATCCA--TCCACATTCA
* * *
37132786 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATCCAT-C-CACATTCA
* *
37132833 TCACATTGGCCATTCGGCCTTATCACATATATGCAAGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATAT-CCA-TCCACATTCA
*
37132880 TCACATTGGCCATTCGGCCTTATCTCATATATACTCATCCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATAT-C-CATCCACATTCA
37132927 TCACAT
1 TCACAT
37132933 AAAATCTTAA
Statistics
Matches: 126, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
45 1 0.01
47 122 0.97
48 2 0.02
49 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (45 bp):
TCACATTGGCCATTCGGCCTTATCACATATATCCATCCACATTCA
Found at i:37147067 original size:26 final size:25
Alignment explanation
Indices: 37147038--37147096 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 25
37147028 TATTTTCTAA
* *
37147038 AAAATTTAATTAGTATCAAT-AAATT
1 AAAATTTAATTAAT-TAAATAAAATT
*
37147063 GAAAAATTAATTAATTAAATAAAATT
1 -AAAATTTAATTAATTAAATAAAATT
37147089 AAAATTTA
1 AAAATTTA
37147097 GGAGAAAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
25 11 0.39
26 17 0.61
ACGTcount: A:0.58, C:0.02, G:0.03, T:0.37
Consensus pattern (25 bp):
AAAATTTAATTAATTAAATAAAATT
Found at i:37155128 original size:9 final size:9
Alignment explanation
Indices: 37155116--37155183 Score: 91
Period size: 9 Copynumber: 7.6 Consensus size: 9
37155106 AAAAGTATAA
37155116 AATTAATCG
1 AATTAATCG
37155125 AATTAATCG
1 AATTAATCG
*
37155134 AATTAACCG
1 AATTAATCG
*
37155143 AATTAACCG
1 AATTAATCG
* *
37155152 AATTACTCA
1 AATTAATCG
*
37155161 AATTAACCG
1 AATTAATCG
37155170 AATTAATCG
1 AATTAATCG
37155179 AATTA
1 AATTA
37155184 TTTGTATAAA
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 51 1.00
ACGTcount: A:0.46, C:0.16, G:0.09, T:0.29
Consensus pattern (9 bp):
AATTAATCG
Found at i:37155146 original size:27 final size:27
Alignment explanation
Indices: 37155116--37155183 Score: 109
Period size: 27 Copynumber: 2.5 Consensus size: 27
37155106 AAAAGTATAA
*
37155116 AATTAATCGAATTAATCGAATTAACCG
1 AATTAATCGAATTAATCAAATTAACCG
* *
37155143 AATTAACCGAATTACTCAAATTAACCG
1 AATTAATCGAATTAATCAAATTAACCG
37155170 AATTAATCGAATTA
1 AATTAATCGAATTA
37155184 TTTGTATAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.46, C:0.16, G:0.09, T:0.29
Consensus pattern (27 bp):
AATTAATCGAATTAATCAAATTAACCG
Found at i:37155218 original size:5 final size:6
Alignment explanation
Indices: 37155203--37155249 Score: 67
Period size: 6 Copynumber: 7.5 Consensus size: 6
37155193 AATTATATGT
*
37155203 TTTTTA TTTTTA TTTTTA TTTTTA CTTTTAGA TTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA -TTTT-TA TTTTTA TTTTTA TTT
37155250 ATTAAAATTA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
6 28 0.76
7 8 0.22
8 1 0.03
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.79
Consensus pattern (6 bp):
TTTTTA
Found at i:37155270 original size:32 final size:31
Alignment explanation
Indices: 37155181--37155273 Score: 84
Period size: 32 Copynumber: 2.9 Consensus size: 31
37155171 ATTAATCGAA
*
37155181 TTATTTGTATAAAATTATATGT--TTTTTATTT
1 TTATTT-T-TAAAATTATTTGTAATTTTTATTT
***
37155212 TTATTTTTATTTTTACTTT-TAGATTTTTATTT
1 TTATTTTTAAAATTA-TTTGTA-ATTTTTATTT
37155244 TTATTTATTAAAATTATTTGTAATTTTTAT
1 TTATTT-TTAAAATTATTTGTAATTTTTAT
37155274 GATTGGGTTG
Statistics
Matches: 49, Mismatches: 7, Indels: 11
0.73 0.10 0.16
Matches are distributed among these distances:
29 6 0.12
30 3 0.06
31 6 0.12
32 26 0.53
33 8 0.16
ACGTcount: A:0.27, C:0.01, G:0.04, T:0.68
Consensus pattern (31 bp):
TTATTTTTAAAATTATTTGTAATTTTTATTT
Found at i:37160595 original size:49 final size:49
Alignment explanation
Indices: 37160521--37160812 Score: 470
Period size: 49 Copynumber: 6.1 Consensus size: 49
37160511 CCCTTCGGGA
* * * * *
37160521 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
37160568 CCTGTCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37160617 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37160664 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37160713 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37160760 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37160809 CTTA
1 CTTA
37160813 CTATCATTTC
Statistics
Matches: 228, Mismatches: 11, Indels: 10
0.92 0.04 0.04
Matches are distributed among these distances:
47 101 0.44
48 1 0.00
49 126 0.55
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37160685 original size:96 final size:96
Alignment explanation
Indices: 37160521--37160812 Score: 503
Period size: 96 Copynumber: 3.0 Consensus size: 96
37160511 CCCTTCGGGA
* * * * * * * *
37160521 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
37160586 ACTTCCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
37160617 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
37160682 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
37160713 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
37160778 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
37160809 CTTA
1 CTTA
37160813 CTATCATTTC
Statistics
Matches: 187, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
96 187 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37164369 original size:40 final size:40
Alignment explanation
Indices: 37164339--37164599 Score: 296
Period size: 40 Copynumber: 6.5 Consensus size: 40
37164329 ATCATGATTA
* * *
37164339 CTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* ** *
37164379 CTCTTTGGGGTTTAGCACGGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* *
37164419 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* *
37164459 CTCCTCGGGACTTAGCCCGGATATATCACTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* * * *
37164499 CTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATG
1 CTCTTCGGGACTTAGCCCGGATATA-TCACTAGCACGAATG
* * *
37164540 C-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AAAG
1 CTCTTCGGGA-CTTAGCCCGGATAT-ATCAC-TAGCACGAATG
37164580 C-CTTCGGGACTTAGCCCGGA
1 CTCTTCGGGACTTAGCCCGGA
37164600 CATCATTCGA
Statistics
Matches: 186, Mismatches: 30, Indels: 10
0.82 0.13 0.04
Matches are distributed among these distances:
39 3 0.02
40 163 0.88
41 20 0.11
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
Found at i:37164944 original size:29 final size:29
Alignment explanation
Indices: 37164905--37164983 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
37164895 CTTAATAATC
*
37164905 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
37164935 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
**
37164964 GGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
37164984 ATCTCACAAC
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
28 3 0.07
29 37 0.86
30 3 0.07
ACGTcount: A:0.27, C:0.33, G:0.16, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:37165026 original size:43 final size:43
Alignment explanation
Indices: 37164965--37165067 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
37164955 TGCATTTCAG
37164965 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
37165008 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
37165051 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
37165068 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:37167168 original size:49 final size:49
Alignment explanation
Indices: 37167094--37167385 Score: 470
Period size: 49 Copynumber: 6.1 Consensus size: 49
37167084 CCCTTCGGGA
* * * * *
37167094 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
37167141 CCTGTCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37167190 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37167237 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37167286 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37167333 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37167382 CTTA
1 CTTA
37167386 CTATCATTTC
Statistics
Matches: 228, Mismatches: 11, Indels: 10
0.92 0.04 0.04
Matches are distributed among these distances:
47 101 0.44
48 1 0.00
49 126 0.55
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37167258 original size:96 final size:96
Alignment explanation
Indices: 37167094--37167385 Score: 503
Period size: 96 Copynumber: 3.0 Consensus size: 96
37167084 CCCTTCGGGA
* * * * * * * *
37167094 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
37167159 ACTTCCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
37167190 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
37167255 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
37167286 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
37167351 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
37167382 CTTA
1 CTTA
37167386 CTATCATTTC
Statistics
Matches: 187, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
96 187 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37188931 original size:14 final size:14
Alignment explanation
Indices: 37188912--37188938 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
37188902 GTGAATTAAT
37188912 TTAAAATTAAAATA
1 TTAAAATTAAAATA
37188926 TTAAAATTAAAAT
1 TTAAAATTAAAAT
37188939 TTTCAAAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (14 bp):
TTAAAATTAAAATA
Found at i:37193381 original size:18 final size:18
Alignment explanation
Indices: 37193358--37193395 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
37193348 TTATAGGATT
37193358 AAAATATGTTT-AGGATAA
1 AAAATATGTTTGA-GATAA
37193376 AAAATATGTTTGAGATAA
1 AAAATATGTTTGAGATAA
37193394 AA
1 AA
37193396 GTATTGTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 18 0.95
19 1 0.05
ACGTcount: A:0.53, C:0.00, G:0.16, T:0.32
Consensus pattern (18 bp):
AAAATATGTTTGAGATAA
Found at i:37197201 original size:14 final size:14
Alignment explanation
Indices: 37197179--37197232 Score: 63
Period size: 14 Copynumber: 3.9 Consensus size: 14
37197169 TTAATTATCA
*
37197179 TTATAGTTTAGGGT
1 TTATGGTTTAGGGT
*
37197193 TTATGGTTTAGGAT
1 TTATGGTTTAGGGT
* *
37197207 ATATGGTGTAGGGT
1 TTATGGTTTAGGGT
*
37197221 TTAAGGTTTAGG
1 TTATGGTTTAGG
37197233 AGTTACTATT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
14 32 1.00
ACGTcount: A:0.22, C:0.00, G:0.33, T:0.44
Consensus pattern (14 bp):
TTATGGTTTAGGGT
Found at i:37197337 original size:29 final size:28
Alignment explanation
Indices: 37197298--37197388 Score: 105
Period size: 29 Copynumber: 3.2 Consensus size: 28
37197288 AACAGTTGGA
37197298 GTTTAAGGTTTAGGGGTTAAGGGTTAGAG
1 GTTTAAGGTTTA-GGGTTAAGGGTTAGAG
* * *
37197327 GTTTATGGTTTAGAGTCTAAGGGTTATAG
1 GTTTAAGGTTTAGGGT-TAAGGGTTAGAG
37197356 G-TTAAGGGTTTAGGGTTAAGGGTTTAG-G
1 GTTTAA-GGTTTAGGGTTAAGGG-TTAGAG
37197384 GTTTA
1 GTTTA
37197389 GGATATAGGG
Statistics
Matches: 52, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
28 14 0.27
29 38 0.73
ACGTcount: A:0.23, C:0.01, G:0.37, T:0.38
Consensus pattern (28 bp):
GTTTAAGGTTTAGGGTTAAGGGTTAGAG
Found at i:37197385 original size:14 final size:14
Alignment explanation
Indices: 37197300--37197400 Score: 91
Period size: 14 Copynumber: 7.1 Consensus size: 14
37197290 CAGTTGGAGT
37197300 TTAA-GGTTTAGGGG
1 TTAAGGGTTTA-GGG
37197314 TTAAGGG-TTAGAGG
1 TTAAGGGTTTAG-GG
* * *
37197328 TTTATGGTTTAGAG
1 TTAAGGGTTTAGGG
37197342 TCTAAGGGTTATA-GG
1 T-TAAGGGTT-TAGGG
37197357 TTAAGGGTTTAGGG
1 TTAAGGGTTTAGGG
37197371 TTAAGGGTTTAGGG
1 TTAAGGGTTTAGGG
* * *
37197385 TTTAGGATATAGGG
1 TTAAGGGTTTAGGG
37197399 TT
1 TT
37197401 TAAAGTTTAG
Statistics
Matches: 72, Mismatches: 9, Indels: 12
0.77 0.10 0.13
Matches are distributed among these distances:
13 3 0.04
14 53 0.74
15 14 0.19
16 2 0.03
ACGTcount: A:0.24, C:0.01, G:0.38, T:0.38
Consensus pattern (14 bp):
TTAAGGGTTTAGGG
Found at i:37197387 original size:7 final size:7
Alignment explanation
Indices: 37197298--37197416 Score: 80
Period size: 7 Copynumber: 16.7 Consensus size: 7
37197288 AACAGTTGGA
*
37197298 GTTTAAG
1 GTTTAGG
37197305 GTTTAGGG
1 GTTTA-GG
*
37197313 GTTAAGG
1 GTTTAGG
37197320 G-TTAGAG
1 GTTTAG-G
*
37197327 GTTTATG
1 GTTTAGG
*
37197334 GTTTAGA
1 GTTTAGG
*
37197341 GTCTAAGG
1 GT-TTAGG
37197349 GTTATA-G
1 GTT-TAGG
*
37197356 GTTAAGG
1 GTTTAGG
37197363 GTTTAGG
1 GTTTAGG
*
37197370 GTTAAGG
1 GTTTAGG
37197377 GTTTAGG
1 GTTTAGG
37197384 GTTTAGG
1 GTTTAGG
* *
37197391 ATATAGG
1 GTTTAGG
**
37197398 GTTTAAA
1 GTTTAGG
*
37197405 GTTTAGT
1 GTTTAGG
37197412 GTTTA
1 GTTTA
37197417 TGCATGGGAT
Statistics
Matches: 85, Mismatches: 21, Indels: 12
0.72 0.18 0.10
Matches are distributed among these distances:
6 4 0.05
7 67 0.79
8 14 0.16
ACGTcount: A:0.24, C:0.01, G:0.35, T:0.39
Consensus pattern (7 bp):
GTTTAGG
Found at i:37197831 original size:61 final size:61
Alignment explanation
Indices: 37197762--37197886 Score: 214
Period size: 61 Copynumber: 2.0 Consensus size: 61
37197752 GTGGCATTTC
*
37197762 TTAAAAAACGCCGCAAAAAACATAATAGTTTAACAAAAATGGCATCGTTTTAATTGGAGAT
1 TTAAAAAACGCCGCAAAAAACATAATAGTTTAACAAAAACGGCATCGTTTTAATTGGAGAT
* * *
37197823 TTAAAAAACGCCGCAAAAAACATAGTAGTTTAACGAAAACGGCATTGTTTTAATTGGAGAT
1 TTAAAAAACGCCGCAAAAAACATAATAGTTTAACAAAAACGGCATCGTTTTAATTGGAGAT
37197884 TTA
1 TTA
37197887 GGGGATTAGC
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
61 60 1.00
ACGTcount: A:0.44, C:0.13, G:0.16, T:0.27
Consensus pattern (61 bp):
TTAAAAAACGCCGCAAAAAACATAATAGTTTAACAAAAACGGCATCGTTTTAATTGGAGAT
Found at i:37197941 original size:84 final size:83
Alignment explanation
Indices: 37197825--37198041 Score: 267
Period size: 84 Copynumber: 2.6 Consensus size: 83
37197815 TTGGAGATTT
* * * * *
37197825 AAAAAACGCCGCAAAAAACATAGTAGTTTAACGAAAACGGCATTGTTTTAATTGGAGATTTAGGG
1 AAAAAACGCCGCAAAAAACAAAATAGTATAACGAAAACGGCATCGTTTTAATTGAAGATTTAGGG
* *
37197890 GATTAGCGGA-ATTTTTTG
66 GAGTAGC-GACATTTTTTA
* *
37197908 AAAAAATGCCGCAAGAAAACAAAATAGTATAACGAAAACGGCGTCGTTTTAATTGAAGATTTAGG
1 AAAAAACGCCGCAA-AAAACAAAATAGTATAACGAAAACGGCATCGTTTTAATTGAAGATTTAGG
37197973 GGAGTAGCGACATTTTTTA
65 GGAGTAGCGACATTTTTTA
* * * *
37197992 AAAAAACGCCGCAAAAAAACATAGTAGCT-TAATGAAAACGGCGTCGTTTT
1 AAAAAACGCCGC-AAAAAACAAAATAG-TATAACGAAAACGGCATCGTTTT
37198042 CATATATTTC
Statistics
Matches: 117, Mismatches: 13, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
83 15 0.13
84 99 0.85
85 3 0.03
ACGTcount: A:0.41, C:0.13, G:0.21, T:0.25
Consensus pattern (83 bp):
AAAAAACGCCGCAAAAAACAAAATAGTATAACGAAAACGGCATCGTTTTAATTGAAGATTTAGGG
GAGTAGCGACATTTTTTA
Found at i:37215245 original size:110 final size:106
Alignment explanation
Indices: 37215111--37215718 Score: 563
Period size: 110 Copynumber: 5.7 Consensus size: 106
37215101 TTTTAAATAT
* * *
37215111 TTTATTTTATTTGAATCACGAAAATTAATTTCAATATTTTATTTTATTTTAACATTACATAATTA
1 TTTATTTAATTT-AATCACAAAAATTAATTTCAATATTTTATTTTATTTTAA-ATTACCTAATTA
*
37215176 AATTAAGTTGTATTTAAAGTTTTATTTTAAATATTTTAATTTA
64 AATTAAATTGTATTTAAAGTTTTATTTTAAATATTTTAATTTA
* *** * *
37215219 TTTCACTTTAATTTAATCACAAAAAAT-ATTTTGTTTTCTTTAATTTTATTTTCAATTTACCTAA
1 TTT-A-TTTAATTTAATCACAAAAATTAATTTCAATAT-TTT-ATTTTATTTT-AAATTACCTAA
* * *
37215283 TTAAATTAAATTATATTTAAAGATTCATTTTAAATATTTT-A--T-
61 TTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTTAATTTA
* * *
37215325 TTTATTT-A---AATTACTAAAATTAATTTCAATATTTTATTTTATTTTAATATTACATAATTAA
1 TTTATTTAATTTAATCACAAAAATTAATTTCAATATTTTATTTTATTTTAA-ATTACCTAATTAA
* *
37215386 ATTAAGTTGTATTTAAAGTTTTATTTTAAATATTTTATTTTA
65 ATTAAATTGTATTTAAAGTTTTATTTTAAATATTTTAATTTA
*** * *
37215428 TTTCACTTTAATTTAATCACGAAAAA-T-ATTTTGTTTTCTTTAATTTTATTTTCAATTTACCTA
1 TTT-A-TTTAATTTAATCAC-AAAAATTAATTTCAATAT-TTT-ATTTTATTTT-AAATTACCTA
* * *
37215491 ATTAAATTAAAATATATTTAAAGTTTCATTTTAAATATTTT-A--T-
60 ATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTTAATTTA
* *
37215534 TTTA--T--TTGAATCACGAAAATTAATTTCAATATTTTATTTTATTTTAACATTACCTAATTAA
1 TTTATTTAATTTAATCACAAAAATTAATTTCAATATTTTATTTTATTTTAA-ATTACCTAATTAA
*
37215595 ATTAAATTGTATTTAAAGTTTTATTTTAAATATTTTATTTTA
65 ATTAAATTGTATTTAAAGTTTTATTTTAAATATTTTAATTTA
* *** * *
37215637 TTTTAATTTAATTTAATCACAAAAAAT-ATTTTGTTTTCTTTAATTTTATTTTCAATTTACCTAA
1 -TTT-ATTTAATTTAATCACAAAAATTAATTTCAATAT-TTT-ATTTTATTTT-AAATTACCTAA
* *
37215701 TTAAATTAAGTTCTATTT
61 TTAAATTAAATTGTATTT
37215719 TCAAGTTCAC
Statistics
Matches: 402, Mismatches: 61, Indels: 72
0.75 0.11 0.13
Matches are distributed among these distances:
98 4 0.01
99 112 0.28
100 25 0.06
101 12 0.03
102 3 0.01
103 4 0.01
104 7 0.02
105 6 0.01
106 7 0.02
107 3 0.01
108 21 0.05
109 41 0.10
110 151 0.38
111 6 0.01
ACGTcount: A:0.37, C:0.06, G:0.03, T:0.54
Consensus pattern (106 bp):
TTTATTTAATTTAATCACAAAAATTAATTTCAATATTTTATTTTATTTTAAATTACCTAATTAAA
TTAAATTGTATTTAAAGTTTTATTTTAAATATTTTAATTTA
Found at i:37215261 original size:99 final size:99
Alignment explanation
Indices: 37215066--37215679 Score: 473
Period size: 99 Copynumber: 6.0 Consensus size: 99
37215056 TATTTTCAAT
* *
37215066 TTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAATATTTTATTTTATTTGAATCAC-
1 TTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTTATTTTA-TT---TCACT
** * ** *
37215130 GAAAATTAATTTC---AATATTTTATTTTATTTTAACA
62 TTAATTTAATCACAAAAATATTTTATTTTACTTTAACA
* * *
37215165 TTACATAATTAAATTAAGTTGTATTTAAAGTTTTATTTTAAATATTTTAATTTATTTCACTTTAA
1 TTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTTATTTTATTTCACTTTAA
*
37215230 TTTAATCACAAAAAATATTTTGTTTT-CTTTAATTTTATTTTCAA
66 TTTAATCAC-AAAAATATTTTATTTTACTTT-A----A----C-A
* * * * *
37215274 TTTACCTAATTAAATTAAATTATATTTAAAGATTCATTTTAAATATTTTATTTTATTTAAATTAC
1 -TTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTTATTTTATTTCACTT--
* ** * *
37215339 TAAAATTAATTTC---AATATTTTATTTTATTTTAATA
63 T-AATTTAATCACAAAAATATTTTATTTTACTTTAACA
* *
37215374 TTACATAATTAAATTAAGTTGTATTTAAAGTTTTATTTTAAATATTTTATTTTATTTCACTTTAA
1 TTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTTATTTTATTTCACTTTAA
*
37215439 TTTAATCACGAAAAATATTTTGTTTT-CTTTAATTTTATTTTCAA
66 TTTAATCAC-AAAAATATTTTATTTTACTTT-A----A----C-A
* * *
37215483 TTTACCTAATTAAATTAAAATATATTTAAAGTTTCATTTTAAATATTTTATTTTATTTGAATCAC
1 -TTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTTATTTTA-TT---TCAC
** * ** *
37215548 -GAAAATTAATTTC---AATATTTTATTTTATTTTAACA
61 TTTAATTTAATCACAAAAATATTTTATTTTACTTTAACA
* *
37215583 TTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTTATTTTATTTTAATTTAA
1 TTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTTATTTTATTTCACTTTAA
*
37215648 TTTAATCACAAAAAATATTTTGTTTT-CTTTAA
66 TTTAATCAC-AAAAATATTTTATTTTACTTTAA
37215680 TTTTATTTTC
Statistics
Matches: 407, Mismatches: 63, Indels: 90
0.73 0.11 0.16
Matches are distributed among these distances:
95 6 0.01
96 24 0.06
97 1 0.00
98 4 0.01
99 166 0.41
100 40 0.10
101 1 0.00
104 2 0.00
105 2 0.00
108 1 0.00
109 28 0.07
110 109 0.27
111 2 0.00
112 1 0.00
113 16 0.04
114 4 0.01
ACGTcount: A:0.37, C:0.06, G:0.03, T:0.53
Consensus pattern (99 bp):
TTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTTATTTTATTTCACTTTAA
TTTAATCACAAAAATATTTTATTTTACTTTAACA
Found at i:37215334 original size:18 final size:18
Alignment explanation
Indices: 37215311--37215375 Score: 58
Period size: 18 Copynumber: 3.6 Consensus size: 18
37215301 AAAGATTCAT
37215311 TTTAAATATTTTATTTTA
1 TTTAAATATTTTATTTTA
* ** * *
37215329 TTTAAATTACTAAAATTAA
1 TTTAAA-TATTTTATTTTA
*
37215348 TTTCAATATTTTATTTTA
1 TTTAAATATTTTATTTTA
*
37215366 TTTTAATATT
1 TTTAAATATT
37215376 ACATAATTAA
Statistics
Matches: 34, Mismatches: 12, Indels: 2
0.71 0.25 0.04
Matches are distributed among these distances:
18 22 0.65
19 12 0.35
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (18 bp):
TTTAAATATTTTATTTTA
Found at i:37215334 original size:42 final size:37
Alignment explanation
Indices: 37215311--37215390 Score: 108
Period size: 37 Copynumber: 2.1 Consensus size: 37
37215301 AAAGATTCAT
37215311 TTTAAATATTTTATTTTATTTAAATTACTAAAATTAA
1 TTTAAATATTTTATTTTATTTAAATTACTAAAATTAA
* *
37215348 TTTCAATATTTTATTTTATTTTAATATTAC-ATAATTAA
1 TTTAAATATTTTATTTTA-TTTAA-ATTACTAAAATTAA
*
37215386 ATTAA
1 TTTAA
37215391 GTTGTATTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
37 17 0.46
38 15 0.41
39 5 0.14
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.55
Consensus pattern (37 bp):
TTTAAATATTTTATTTTATTTAAATTACTAAAATTAA
Found at i:37215399 original size:209 final size:209
Alignment explanation
Indices: 37215039--37215718 Score: 1225
Period size: 209 Copynumber: 3.3 Consensus size: 209
37215029 ATGGCATACA
*
37215039 TTTGTTTTCTTTAATTCTATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTT
1 TTTGTTTTCTTTAATTTTATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTT
37215104 TAAATATTTTATTTTATTTGAATCACGAAAATTAATTTCAATATTTTATTTTATTTTAACATTAC
66 TAAATATTTTATTTTATTTGAATCACGAAAATTAATTTCAATATTTTATTTTATTTTAACATTAC
*
37215169 ATAATTAAATTAAGTTGTATTTAAAGTTTTATTTTAAATATTTTAATTTATTTCACTTTAATTTA
131 ATAATTAAATTAAGTTGTATTTAAAGTTTTATTTTAAATATTTTATTTTATTTCACTTTAATTTA
37215234 ATCACAAAAAATAT
196 ATCACAAAAAATAT
*
37215248 TTTGTTTTCTTTAATTTTATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGATTCATTT
1 TTTGTTTTCTTTAATTTTATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTT
* * * *
37215313 TAAATATTTTATTTTATTTAAATTACTAAAATTAATTTCAATATTTTATTTTATTTTAATATTAC
66 TAAATATTTTATTTTATTTGAATCACGAAAATTAATTTCAATATTTTATTTTATTTTAACATTAC
37215378 ATAATTAAATTAAGTTGTATTTAAAGTTTTATTTTAAATATTTTATTTTATTTCACTTTAATTTA
131 ATAATTAAATTAAGTTGTATTTAAAGTTTTATTTTAAATATTTTATTTTATTTCACTTTAATTTA
*
37215443 ATCACGAAAAATAT
196 ATCACAAAAAATAT
*
37215457 TTTGTTTTCTTTAATTTTATTTTCAATTTACCTAATTAAATTAAAATATATTTAAAGTTTCATTT
1 TTTGTTTTCTTTAATTTTATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTT
37215522 TAAATATTTTATTTTATTTGAATCACGAAAATTAATTTCAATATTTTATTTTATTTTAACATTAC
66 TAAATATTTTATTTTATTTGAATCACGAAAATTAATTTCAATATTTTATTTTATTTTAACATTAC
* * * *
37215587 CTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTTATTTTATTTTAATTTAATTTA
131 ATAATTAAATTAAGTTGTATTTAAAGTTTTATTTTAAATATTTTATTTTATTTCACTTTAATTTA
37215652 ATCACAAAAAATAT
196 ATCACAAAAAATAT
* *
37215666 TTTGTTTTCTTTAATTTTATTTTCAATTTACCTAATTAAATTAAGTTCTATTT
1 TTTGTTTTCTTTAATTTTATTTTCAATTTACCTAATTAAATTAAATTATATTT
37215719 TCAAGTTCAC
Statistics
Matches: 449, Mismatches: 22, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
209 449 1.00
ACGTcount: A:0.36, C:0.07, G:0.03, T:0.54
Consensus pattern (209 bp):
TTTGTTTTCTTTAATTTTATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTT
TAAATATTTTATTTTATTTGAATCACGAAAATTAATTTCAATATTTTATTTTATTTTAACATTAC
ATAATTAAATTAAGTTGTATTTAAAGTTTTATTTTAAATATTTTATTTTATTTCACTTTAATTTA
ATCACAAAAAATAT
Found at i:37215752 original size:9 final size:9
Alignment explanation
Indices: 37215738--37215890 Score: 93
Period size: 9 Copynumber: 16.8 Consensus size: 9
37215728 CCAGCAACTC
37215738 ACATAATTT
1 ACATAATTT
37215747 ACATAATTT
1 ACATAATTT
37215756 ACATAA--T
1 ACATAATTT
*
37215763 ACATAACTT
1 ACATAATTT
37215772 ACATAATTT
1 ACATAATTT
*
37215781 AAAGATCAAATTT
1 --ACAT--AATTT
*
37215794 -CATAACTT
1 ACATAATTT
*
37215802 ATATAATTT
1 ACATAATTT
*
37215811 ACATAACTT
1 ACATAATTT
37215820 ACATAA--T
1 ACATAATTT
* *
37215827 ACACAACTT
1 ACATAATTT
*
37215836 ACATAGTTT
1 ACATAATTT
*
37215845 AAAGATAAAATTT
1 --ACAT--AATTT
*
37215858 -CATAACTT
1 ACATAATTT
37215866 ACATAATTT
1 ACATAATTT
*
37215875 ACATAACTT
1 ACATAATTT
37215884 ACATAAT
1 ACATAAT
37215891 ACATAAATAT
Statistics
Matches: 111, Mismatches: 19, Indels: 28
0.70 0.12 0.18
Matches are distributed among these distances:
7 13 0.12
8 8 0.07
9 71 0.64
10 4 0.04
11 6 0.05
13 9 0.08
ACGTcount: A:0.47, C:0.14, G:0.02, T:0.37
Consensus pattern (9 bp):
ACATAATTT
Found at i:37215767 original size:16 final size:16
Alignment explanation
Indices: 37215746--37215896 Score: 80
Period size: 16 Copynumber: 9.4 Consensus size: 16
37215736 TCACATAATT
*
37215746 TACATAATTTACATAA
1 TACATAACTTACATAA
37215762 TACATAACTTACATAA
1 TACATAACTTACATAA
** **
37215778 TTTA-AAGAT-CA-AA
1 TACATAACTTACATAA
* *
37215791 TTTCATAACTTATATAA
1 -TACATAACTTACATAA
37215808 TTTACATAACTTACATAA
1 --TACATAACTTACATAA
* *
37215826 TACACAACTTACATAG
1 TACATAACTTACATAA
** **
37215842 TTTA-AAGATA-A-AA
1 TACATAACTTACATAA
*
37215855 TTTCATAACTTACATAA
1 -TACATAACTTACATAA
37215872 TTTACATAACTTACATAA
1 --TACATAACTTACATAA
37215890 TACATAA
1 TACATAA
37215897 ATATATATCA
Statistics
Matches: 103, Mismatches: 22, Indels: 20
0.71 0.15 0.14
Matches are distributed among these distances:
13 3 0.03
14 9 0.09
15 14 0.14
16 42 0.41
17 4 0.04
18 31 0.30
ACGTcount: A:0.48, C:0.15, G:0.02, T:0.36
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:37215800 original size:30 final size:30
Alignment explanation
Indices: 37215764--37215875 Score: 111
Period size: 30 Copynumber: 3.6 Consensus size: 30
37215754 TTACATAATA
37215764 CATAACTTACATAATTTAAAGATCAAATTT
1 CATAACTTACATAATTTAAAGATCAAATTT
* *
37215794 CATAACTTATATAATTTACATA-ACTTACATAA-TA
1 CATAACTTACATAATTTA-A-AGA--T-CA-AATTT
* * *
37215828 CACAACTTACATAGTTTAAAGATAAAATTT
1 CATAACTTACATAATTTAAAGATCAAATTT
37215858 CATAACTTACATAATTTA
1 CATAACTTACATAATTTA
37215876 CATAACTTAC
Statistics
Matches: 65, Mismatches: 9, Indels: 16
0.72 0.10 0.18
Matches are distributed among these distances:
29 2 0.03
30 35 0.54
31 3 0.05
32 2 0.03
33 3 0.05
34 18 0.28
35 2 0.03
ACGTcount: A:0.46, C:0.14, G:0.03, T:0.37
Consensus pattern (30 bp):
CATAACTTACATAATTTAAAGATCAAATTT
Found at i:37215846 original size:64 final size:64
Alignment explanation
Indices: 37215733--37215893 Score: 268
Period size: 64 Copynumber: 2.5 Consensus size: 64
37215723 GTTCACCAGC
* * * *
37215733 AACTCACATAATTTACATAATTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCAT
1 AACTTACATAATTTACATAACTTACATAATACACAACTTACATAATTTAAAGATAAAATTTCAT
* *
37215797 AACTTATATAATTTACATAACTTACATAATACACAACTTACATAGTTTAAAGATAAAATTTCAT
1 AACTTACATAATTTACATAACTTACATAATACACAACTTACATAATTTAAAGATAAAATTTCAT
37215861 AACTTACATAATTTACATAACTTACATAATACA
1 AACTTACATAATTTACATAACTTACATAATACA
37215894 TAAATATATA
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
64 90 1.00
ACGTcount: A:0.47, C:0.16, G:0.02, T:0.35
Consensus pattern (64 bp):
AACTTACATAATTTACATAACTTACATAATACACAACTTACATAATTTAAAGATAAAATTTCAT
Found at i:37220989 original size:13 final size:14
Alignment explanation
Indices: 37220971--37221002 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
37220961 TTACTATAAA
37220971 TAATTATAAT-GTT
1 TAATTATAATGGTT
37220984 TAATTATAATGGTT
1 TAATTATAATGGTT
37220998 TAATT
1 TAATT
37221003 CATCGTTAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.38, C:0.00, G:0.09, T:0.53
Consensus pattern (14 bp):
TAATTATAATGGTT
Found at i:37221866 original size:43 final size:43
Alignment explanation
Indices: 37221805--37221895 Score: 164
Period size: 43 Copynumber: 2.1 Consensus size: 43
37221795 TCTGCCAAAA
37221805 TTAGCGGCGTTTGTAACAAAAGCGCAACTAAAAGACATGACTT
1 TTAGCGGCGTTTGTAACAAAAGCGCAACTAAAAGACATGACTT
* *
37221848 TTAGCGGCGTTTGTAACAATAGCGCCACTAAAAGACATGACTT
1 TTAGCGGCGTTTGTAACAAAAGCGCAACTAAAAGACATGACTT
37221891 TTAGC
1 TTAGC
37221896 TACGCTTGAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (43 bp):
TTAGCGGCGTTTGTAACAAAAGCGCAACTAAAAGACATGACTT
Found at i:37221917 original size:43 final size:43
Alignment explanation
Indices: 37221831--37221966 Score: 143
Period size: 43 Copynumber: 3.2 Consensus size: 43
37221821 CAAAAGCGCA
* * *
37221831 ACTAAAAGACATGACTTTTAGCGGCGTTTGTAA-CA-ATAGCGCC
1 ACTAAAAGACATGACTTTTAGCGACGCTTG-AACCACA-AACGCC
*
37221874 ACTAAAAGACATGACTTTTAGCTACGCTTGAACCACAAACGCC
1 ACTAAAAGACATGACTTTTAGCGACGCTTGAACCACAAACGCC
* * ***
37221917 ACT-AAAGCCATGGCTTTTAGCGACGCTTTTCCCACAAACGCC
1 ACTAAAAGACATGACTTTTAGCGACGCTTGAACCACAAACGCC
*
37221959 GCTAAAAG
1 ACTAAAAG
37221967 TTATGATCTT
Statistics
Matches: 79, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
42 37 0.47
43 41 0.52
44 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (43 bp):
ACTAAAAGACATGACTTTTAGCGACGCTTGAACCACAAACGCC
Found at i:37221943 original size:42 final size:42
Alignment explanation
Indices: 37221835--37221964 Score: 129
Period size: 42 Copynumber: 3.1 Consensus size: 42
37221825 AGCGCAACTA
* * *
37221835 AAAGACATGACTTTTAGCGGCGTTTGTAA-CA-ATAGCGCCACT
1 AAAGACATGACTTTTAGCGACGCTTG-AACCACA-AACGCCACT
*
37221877 AAAAGACATGACTTTTAGCTACGCTTGAACCACAAACGCCACT
1 -AAAGACATGACTTTTAGCGACGCTTGAACCACAAACGCCACT
* * *** *
37221920 AAAGCCATGGCTTTTAGCGACGCTTTTCCCACAAACGCCGCT
1 AAAGACATGACTTTTAGCGACGCTTGAACCACAAACGCCACT
37221962 AAA
1 AAA
37221965 AGTTATGATC
Statistics
Matches: 74, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
42 40 0.54
43 33 0.45
44 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (42 bp):
AAAGACATGACTTTTAGCGACGCTTGAACCACAAACGCCACT
Found at i:37224034 original size:50 final size:45
Alignment explanation
Indices: 37223954--37224175 Score: 148
Period size: 46 Copynumber: 4.8 Consensus size: 45
37223944 ATGGAGTCAG
* * *
37223954 GTGCCGATGCCATGTCCTAGACATGATCTTACACAAGTTCTACTATATC
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACAC-AG-AC-AC-ATATC
* *
37224003 TGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTC
1 -GTGCCGATGCCATGTCCCAGACATGGTCTTACACAGACACATATC
* * ** *
37224049 GTAGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTATGTCTC
1 GT-GCCGATGCCATGTCCCAGACATGGTCTTACACAGAC--ACATATC
* *
37224095 GAGGCCGATG-CATGTCCCAGACAT-GTCTTACACTAG-CACTAGTCTC
1 G-TGCCGATGCCATGTCCCAGACATGGTCTTACAC-AGACAC-A-TATC
* * * *
37224141 AGTGTCAATGCCATGTCCCAAATATGGTCTTACAC
1 -GTGCCGATGCCATGTCCCAGACATGGTCTTACAC
37224176 TGGCTCTCAT
Statistics
Matches: 145, Mismatches: 17, Indels: 22
0.79 0.09 0.12
Matches are distributed among these distances:
44 13 0.09
45 16 0.11
46 57 0.39
47 16 0.11
48 10 0.07
49 1 0.01
50 32 0.22
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (45 bp):
GTGCCGATGCCATGTCCCAGACATGGTCTTACACAGACACATATC
Found at i:37224095 original size:46 final size:46
Alignment explanation
Indices: 37224006--37224222 Score: 178
Period size: 46 Copynumber: 4.7 Consensus size: 46
37223996 CTATATCTGT
* **
37224006 GCCGATGCCATGTCCCAGACATGGTCTTACACTGAC--ACATCTCGTA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTATGTCTCGTA
37224052 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTATGTCTCG-A
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTATGTCTCGTA
* *
37224097 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCACTA-GTCTCAGT-
1 -GCCGATGCATGTCCCAGACATGTCTTACACTGGC-TTATGTCTC-GTA
* * * * ** *
37224144 GTCAATGCCATGTCCCAAATATGGTCTTACACTGGCTCTCAT-AAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-T-ATGTCTCGTA
* *
37224192 GCCGATGCATGCCCCATACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
37224223 AGCTCACACA
Statistics
Matches: 141, Mismatches: 18, Indels: 24
0.77 0.10 0.13
Matches are distributed among these distances:
44 12 0.09
45 15 0.11
46 66 0.47
47 28 0.20
48 18 0.13
49 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTATGTCTCGTA
Found at i:37224173 original size:94 final size:90
Alignment explanation
Indices: 37224006--37224225 Score: 241
Period size: 94 Copynumber: 2.4 Consensus size: 90
37223996 CTATATCTGT
* *
37224006 GCCGATGCCATGTCCCAGACATGGTCTTACACT-GACACATCTCGTAGCCGATGCATGTCCCAGA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAG-CACATCTCGTAGCCAATGCATGTCCCAAA
**
37224070 CATGTCTTACACTGGCT-T-ATGTCTCGAG
63 CATGTCTTACACTGGCTCTCAT-AAT-GAG
*
37224098 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTAGTCTCAGT-GTCAATGCCATGTCCCAA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCAC-A-TCTC-GTAGCCAATG-CATGTCCCAA
* *
37224162 ATATGGTCTTACACTGGCTCTCATAATGTG
62 ACAT-GTCTTACACTGGCTCTCATAATGAG
* *
37224192 GCCGATGCATGCCCCATACATGTCTTACACTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
37224226 TCACACAAGT
Statistics
Matches: 111, Mismatches: 9, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
90 13 0.12
91 16 0.14
92 16 0.14
93 14 0.13
94 48 0.43
95 2 0.02
96 2 0.02
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (90 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCAATGCATGTCCCAAACAT
GTCTTACACTGGCTCTCATAATGAG
Found at i:37224217 original size:140 final size:141
Alignment explanation
Indices: 37223956--37224222 Score: 328
Period size: 140 Copynumber: 1.9 Consensus size: 141
37223946 GGAGTCAGGT
* * *
37223956 GCCGATGCCATGTCCTAGACATGATCTTACACAAGTTCTACTATATCTGTGCCGATGCCATGTCC
1 GCCGATGCCATGTCCCAGACATGATCTTACACAAG-TCTACTATATCAGTGCCAATGCCATGTCC
* *
37224021 CAGACATGGTCTTACACTGACACATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGC
65 CAAACATGGTCTTACACTGACACATCTCGTAGCCGATGCATGCCCCAGACATGTCTTACACTGGC
37224086 TTATGTCTCGAG
130 TTATGTCTCGAG
* * *
37224098 GCCGATG-CATGTCCCAGACATG-TCTTACACTAG-C-ACTAGTCTCAGTGTCAATGCCATGTCC
1 GCCGATGCCATGTCCCAGACATGATCTTACACAAGTCTACTA-TATCAGTGCCAATGCCATGTCC
* * * * * *
37224159 CAAATATGGTCTTACACTGGCTC-TCATAATGTGGCCGATGCATGCCCCATACATGTCTTACACT
65 CAAACATGGTCTTACACTGACACATC-T--CGTAGCCGATGCATGCCCCAGACATGTCTTACACT
37224223 AGCTCACACA
Statistics
Matches: 107, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
137 6 0.06
138 39 0.36
140 41 0.38
141 14 0.13
142 7 0.07
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (141 bp):
GCCGATGCCATGTCCCAGACATGATCTTACACAAGTCTACTATATCAGTGCCAATGCCATGTCCC
AAACATGGTCTTACACTGACACATCTCGTAGCCGATGCATGCCCCAGACATGTCTTACACTGGCT
TATGTCTCGAG
Found at i:37227339 original size:21 final size:21
Alignment explanation
Indices: 37227313--37227354 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
37227303 TTTGTGATCC
*
37227313 CATGTAAGACCATGTCTGGGA
1 CATGTAAGACCATATCTGGGA
*
37227334 CATGTAGGACCATATCTGGGA
1 CATGTAAGACCATATCTGGGA
37227355 TATGGCATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (21 bp):
CATGTAAGACCATATCTGGGA
Found at i:37240416 original size:20 final size:20
Alignment explanation
Indices: 37240393--37240431 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
37240383 TGAAATTAAA
37240393 GGAAAAATACTAAAATTTTG
1 GGAAAAATACTAAAATTTTG
* *
37240413 GGAAAAATTCTTAAATTTT
1 GGAAAAATACTAAAATTTT
37240432 ATGTAAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.46, C:0.05, G:0.13, T:0.36
Consensus pattern (20 bp):
GGAAAAATACTAAAATTTTG
Found at i:37241478 original size:14 final size:14
Alignment explanation
Indices: 37241459--37241486 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
37241449 GTAGGTTTAG
37241459 TTTCTATTATACAA
1 TTTCTATTATACAA
37241473 TTTCTATTATACAA
1 TTTCTATTATACAA
37241487 ACTTACTAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.00, T:0.50
Consensus pattern (14 bp):
TTTCTATTATACAA
Found at i:37242098 original size:43 final size:43
Alignment explanation
Indices: 37241986--37242098 Score: 165
Period size: 43 Copynumber: 2.6 Consensus size: 43
37241976 ACAGGTAGAC
*
37241986 ACACGGGCATGT-GTCTAGACCGTGTGTGACACATGGCATGGTA
1 ACACGGGCATGTGGT-TAGGCCGTGTGTGACACATGGCATGGTA
* * *
37242029 ACACAGGCATGTGGTTAGGTCGTGTGTGACACATGGCCTGGTA
1 ACACGGGCATGTGGTTAGGCCGTGTGTGACACATGGCATGGTA
*
37242072 ACACGGGCATGTGGTTAGGCCATGTGT
1 ACACGGGCATGTGGTTAGGCCGTGTGT
37242099 CCCCTGTACT
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
43 60 0.97
44 2 0.03
ACGTcount: A:0.21, C:0.19, G:0.35, T:0.25
Consensus pattern (43 bp):
ACACGGGCATGTGGTTAGGCCGTGTGTGACACATGGCATGGTA
Found at i:37243258 original size:20 final size:20
Alignment explanation
Indices: 37243233--37243280 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
37243223 GGTCTCACAA
37243233 GCCCGTGTGGCTTGGGACAC
1 GCCCGTGTGGCTTGGGACAC
*
37243253 GCCCGTGTGGCTTGGGACAT
1 GCCCGTGTGGCTTGGGACAC
37243273 GCCCGTGT
1 GCCCGTGT
37243281 AACTATTTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.08, C:0.29, G:0.40, T:0.23
Consensus pattern (20 bp):
GCCCGTGTGGCTTGGGACAC
Found at i:37250304 original size:48 final size:48
Alignment explanation
Indices: 37250077--37250304 Score: 307
Period size: 48 Copynumber: 4.8 Consensus size: 48
37250067 TAAAGTACCA
* * *
37250077 ATGCCATGTCCCAGACATGGTCTTACA-T-GAATCCACATATCATCGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCA--CATATATCATCGCCG
* * * *
37250125 ATGCCATGTCCCAGACATGGTCTTACATTGACACATATATCATCACTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCG
* * *
37250173 ATGCCATGTCCTAGACATGGTCTTACACTGGCACATATAACATTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCG
*
37250221 ATGCCATGTCCCAGACATGGTCTTACAATGGCACATATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCG
* *
37250269 ATGCCATGTCCCATACATGGTCTTGCACTGGCACAT
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACAT
37250305 TGTACCACCC
Statistics
Matches: 158, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
48 156 0.99
49 1 0.01
50 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCG
Found at i:37251127 original size:20 final size:20
Alignment explanation
Indices: 37251102--37251147 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
37251092 TGTGGGCCTT
37251102 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
37251122 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
37251141 GCCCATA
1 GCCCATA
37251148 ACAAAACAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:37251156 original size:19 final size:20
Alignment explanation
Indices: 37251114--37251157 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
37251104 CCATATTAAC
** *
37251114 ACAGTTGGGCCCATTTCAAT
1 ACAGTTGGGCCCATAACAAA
37251134 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCATAACAAA
37251153 ACAGT
1 ACAGT
37251158 CTCATATGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (20 bp):
ACAGTTGGGCCCATAACAAA
Found at i:37253057 original size:38 final size:38
Alignment explanation
Indices: 37253015--37253441 Score: 502
Period size: 38 Copynumber: 11.1 Consensus size: 38
37253005 GAAGGCCCGA
* * * *
37253015 ATATAATACCAGCACTAGGCCTG-GAAGATTTATCCCAG
1 ATATAATACCAGCACGAAGCCTGCG-GGATTTAACCCAG
* *
37253053 ATATAACACCAGCACGAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAG
** * * *
37253091 ATATTTTACCAGCACGAAGCCTGTGGGTCTTTAAGCCCGG
1 ATATAATACCAGCACGAAGCCTGCGGG-ATTTAA-CCCAG
*
37253131 ATATAATACCATCACGAAGCCTGCGGGATTTAACCCAG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAG
** * *
37253169 ATATTTTACCAACACGAAGCCTGCGGGTCTTTAAGCCCAG
1 ATATAATACCAGCACGAAGCCTGCGGG-ATTTAA-CCCAG
* *
37253209 ATATAATACTAGCACGAAGCCTGCAGGATTTAACCC-G
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAG
* * *
37253246 AATATAATATCAGCACGAAGCCTGCGAGATTTAA-CCTG
1 -ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAG
* *
37253284 AATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
1 -ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAG
*
37253323 ATATAATACCAGCACGAAGCCTGCAGGATTTAACCC-G
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAG
* *
37253360 AATATAATACCAGCAGGAAGCCTGCGGGATTTAACCCGG
1 -ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAG
* *
37253399 ATAAAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAG
37253437 ATATA
1 ATATA
37253442 CATCGAATAT
Statistics
Matches: 337, Mismatches: 42, Indels: 20
0.84 0.11 0.05
Matches are distributed among these distances:
37 4 0.01
38 253 0.75
39 25 0.07
40 55 0.16
ACGTcount: A:0.33, C:0.25, G:0.21, T:0.21
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAG
Found at i:37263893 original size:19 final size:19
Alignment explanation
Indices: 37263869--37263919 Score: 102
Period size: 19 Copynumber: 2.7 Consensus size: 19
37263859 TGGACACAAA
37263869 GACATGCCCGTGTGCCCTT
1 GACATGCCCGTGTGCCCTT
37263888 GACATGCCCGTGTGCCCTT
1 GACATGCCCGTGTGCCCTT
37263907 GACATGCCCGTGT
1 GACATGCCCGTGT
37263920 CCCCAAGCTG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.12, C:0.35, G:0.27, T:0.25
Consensus pattern (19 bp):
GACATGCCCGTGTGCCCTT
Found at i:37265180 original size:48 final size:47
Alignment explanation
Indices: 37265109--37265280 Score: 220
Period size: 48 Copynumber: 3.6 Consensus size: 47
37265099 CAATAAAGTA
* *
37265109 CCAATGCCATGTCCCAGACATGGTCTTACAT-GAATCCACATATCATCG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGCA--CATATATCATCG
* * *
37265157 CCAATGCCATGTCCTAGGCATGGTCTTACAATGGCACATATATCATCA
1 CCAATGCCATGTCCCAGACATGGTCTTAC-ATGGCACATATATCATCG
* *
37265205 CCGATGCCATGTCCCAGACATAGTCTTACACTGGCACATATATCATCG
1 CCAATGCCATGTCCCAGACATGGTCTTACA-TGGCACATATATCATCG
**
37265253 CTGATGCCATGTCCCAGACATGGTCTTA
1 CCAATGCCATGTCCCAGACATGGTCTTA
37265281 TATAGAATCT
Statistics
Matches: 109, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
47 1 0.01
48 104 0.95
49 2 0.02
50 2 0.02
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (47 bp):
CCAATGCCATGTCCCAGACATGGTCTTACATGGCACATATATCATCG
Found at i:37269805 original size:56 final size:56
Alignment explanation
Indices: 37269716--37269835 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
37269706 ACAAGGGATG
37269716 ATGGGCAAAACATGTCATGAAACATGTTCTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTCTGTTAATGGAAAAATAAAATAAGAAGC
* *
37269772 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTCTGTTAATGGAAAAATAAAATAAGAAGC
37269828 ATGGGCAA
1 ATGGGCAA
37269836 TAAACTAATA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.45, C:0.10, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTCTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:37271052 original size:40 final size:39
Alignment explanation
Indices: 37270962--37271146 Score: 169
Period size: 40 Copynumber: 4.6 Consensus size: 39
37270952 TCGAATGATG
* * * *
37270962 TCCAGGCTAAGTCTCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCAGGCTAAGTC-CGAAGGCATTTGTGC-GAGTTACTAAA
* *
37271002 TCC-GGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCAGG-CTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
37271042 TCCAGGCTAAGCCCAAAGGCATTGGTGCGAGTTACTAAA
1 TCCAGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* *
37271081 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCAGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
37271122 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCAGGCTAAGT-CCGAAGGCATTTG
37271147 AACGAGTTGC
Statistics
Matches: 121, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
39 34 0.28
40 74 0.61
41 13 0.11
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
TCCAGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:37271129 original size:79 final size:79
Alignment explanation
Indices: 37271015--37271179 Score: 190
Period size: 79 Copynumber: 2.1 Consensus size: 79
37271005 GGACTAAGAT
* **
37271015 CCGAAGGCATTTGTGCGAGATACTAATTCCAGGCTAAG-CCCAAAGGCATTGGTGCGAGTTACTA
1 CCGAAGGCATTTGTGCGAGATACTAATACCAGGCTAAGTCCCAAAGGCATTGGAACGAGTTACTA
*
37271079 AATCCGGGTTAAGTC
66 AATCC-GGTTAAATC
* * * * * *
37271094 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAGTTGCT
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCAGGCTAAGTCCCAAAGGCATTGGAACGAGTTACT
* *
37271158 ATATCCGGTTAAATT
65 AAATCCGGTTAAATC
37271173 CCGAAGG
1 CCGAAGG
37271180 TACGTGATTT
Statistics
Matches: 72, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
78 2 0.03
79 45 0.62
80 25 0.35
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCAGGCTAAGTCCCAAAGGCATTGGAACGAGTTACTA
AATCCGGTTAAATC
Found at i:37271153 original size:40 final size:40
Alignment explanation
Indices: 37271015--37271165 Score: 128
Period size: 40 Copynumber: 3.8 Consensus size: 40
37271005 GGACTAAGAT
** * * *
37271015 CCGAAGGCATTTGTGCGAGATACTA-ATTCCAGGCTAAG-C
1 CCGAAGGCATTTGAACGAGTTACTATA-ACCGGGCTAAGTC
* * ** *
37271054 CCAAAGGCATTGGTGCGAGTTACTA-AATCCGGGTTAAGTC
1 CCGAAGGCATTTGAACGAGTTACTATAA-CCGGGCTAAGTC
** *
37271094 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTC
1 CCGAAGGCATTTGAACGAGTTACTATAACCGGGCTAAGTC
* *
37271134 CCGAAGGCATTTGAACGAGTTGCTATATCCGG
1 CCGAAGGCATTTGAACGAGTTACTATAACCGG
37271166 TTAAATTCCG
Statistics
Matches: 95, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
39 31 0.33
40 62 0.65
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTTGAACGAGTTACTATAACCGGGCTAAGTC
Found at i:37278417 original size:69 final size:69
Alignment explanation
Indices: 37278290--37278419 Score: 161
Period size: 69 Copynumber: 1.9 Consensus size: 69
37278280 CTTAAAGAAG
* * * * * *
37278290 TATAAGGTGTAAGACCATAGCTCGACTCTAGCAAGCAATGCAATCTATCAAGATAGTAAACATGG
1 TATAAGGTGTAAGACCATAGCTCGACTATAGAAACCAATGCAACCAATCAAGACAGTAAACATGG
37278355 GGAT
66 GGAT
* * * **
37278359 TATAAGGTGTAAGACCATAGCTCGACTATGGAAACCAATGTAGCCAATCGGGACAGTAAAC
1 TATAAGGTGTAAGACCATAGCTCGACTATAGAAACCAATGCAACCAATCAAGACAGTAAAC
37278420 TTAGGGTAGT
Statistics
Matches: 50, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
69 50 1.00
ACGTcount: A:0.38, C:0.18, G:0.22, T:0.22
Consensus pattern (69 bp):
TATAAGGTGTAAGACCATAGCTCGACTATAGAAACCAATGCAACCAATCAAGACAGTAAACATGG
GGAT
Found at i:37279890 original size:37 final size:37
Alignment explanation
Indices: 37279840--37279918 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
37279830 TTATAACGAA
* * *
37279840 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
37279877 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
37279914 GTCTT
1 GTCTT
37279919 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:37280115 original size:47 final size:47
Alignment explanation
Indices: 37280037--37280306 Score: 416
Period size: 47 Copynumber: 5.7 Consensus size: 47
37280027 CCCTTCGGGA
* * * * * *
37280037 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37280084 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37280131 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37280178 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37280225 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
37280272 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
37280307 AGAATCCTAA
Statistics
Matches: 208, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
46 1 0.00
47 207 1.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37286676 original size:25 final size:25
Alignment explanation
Indices: 37286648--37286710 Score: 110
Period size: 25 Copynumber: 2.5 Consensus size: 25
37286638 AATAACTAGA
37286648 GCAAAGCCCTTTTC-GATAAACTGGG
1 GCAAAGCCCTTTTCAG-TAAACTGGG
37286673 GCAAAGCCCTTTTCAGTAAACTGGG
1 GCAAAGCCCTTTTCAGTAAACTGGG
37286698 GCAAAGCCCTTTT
1 GCAAAGCCCTTTT
37286711 AGCACTTCCT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
25 36 0.97
26 1 0.03
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.25
Consensus pattern (25 bp):
GCAAAGCCCTTTTCAGTAAACTGGG
Found at i:37286976 original size:27 final size:27
Alignment explanation
Indices: 37286915--37287054 Score: 158
Period size: 27 Copynumber: 5.2 Consensus size: 27
37286905 GGGCAAAATG
* * *
37286915 GTAATTTTACCCCACAAGGGT-TTCTCG
1 GTAATTCTACCCTACAAGGGTATT-TCA
*
37286942 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* * *
37286969 GTATTTCTACCATACAAGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCA
* * * *
37286996 GTAATTCTACCTTATAGGGGTA-TTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
37287022 GTAATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
37287049 GTAATT
1 GTAATT
37287055 TTGTAAATTG
Statistics
Matches: 93, Mismatches: 18, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
26 21 0.23
27 70 0.75
28 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:37286986 original size:54 final size:53
Alignment explanation
Indices: 37286928--37287054 Score: 166
Period size: 53 Copynumber: 2.4 Consensus size: 53
37286918 ATTTTACCCC
* *
37286928 ACAAGGGT-TTCTCGGTAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCAT
1 ACAAGGGTATT-TCAGTAATTCTACCCTACAGGGGTA-TTCAGTAATTCTACCAT
* * * * *
37286982 ACAAGGGTATTTTAGTAATTCTACCTTATAGGGGTATTCGGTAATTCTACCCT
1 ACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTCAGTAATTCTACCAT
37287035 ACAAGGGTATTTCAGTAATT
1 ACAAGGGTATTTCAGTAATT
37287055 TTGTAAATTG
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
53 33 0.52
54 29 0.45
55 2 0.03
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (53 bp):
ACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTCAGTAATTCTACCAT
Found at i:37287229 original size:27 final size:27
Alignment explanation
Indices: 37287147--37287223 Score: 127
Period size: 27 Copynumber: 2.9 Consensus size: 27
37287137 TACAGGTCGA
* *
37287147 GGGTATTTTAGTAATTTCACAAATTAG
1 GGGTATTTTAGTAATTTTACAAATAAG
*
37287174 GGGTATTTTGGTAATTTTACAAATAAG
1 GGGTATTTTAGTAATTTTACAAATAAG
37287201 GGGTATTTTAGTAATTTTACAAA
1 GGGTATTTTAGTAATTTTACAAA
37287224 CCAGGGTATT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.34, C:0.05, G:0.19, T:0.42
Consensus pattern (27 bp):
GGGTATTTTAGTAATTTTACAAATAAG
Found at i:37287241 original size:26 final size:26
Alignment explanation
Indices: 37287147--37287245 Score: 83
Period size: 27 Copynumber: 3.7 Consensus size: 26
37287137 TACAGGTCGA
* * **
37287147 GGGTATTTTAGTAATTTCACAAATTAG
1 GGGTATTTGA-TAATTTTACAAACAAG
* *
37287174 GGGTATTTTGGTAATTTTACAAATAAG
1 GGGTA-TTTGATAATTTTACAAACAAG
* *
37287201 GGGTATTTTAGTAATTTTACAAACCA-
1 GGGTATTTGA-TAATTTTACAAACAAG
37287227 GGGTATTTCGATAATTTTA
1 GGGTATTT-GATAATTTTA
37287246 GTAAACTAAA
Statistics
Matches: 60, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
26 19 0.32
27 38 0.63
28 3 0.05
ACGTcount: A:0.32, C:0.07, G:0.19, T:0.41
Consensus pattern (26 bp):
GGGTATTTGATAATTTTACAAACAAG
Found at i:37298165 original size:47 final size:47
Alignment explanation
Indices: 37298112--37298548 Score: 676
Period size: 47 Copynumber: 9.2 Consensus size: 47
37298102 AATTCTAAAT
37298112 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
37298159 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
37298206 TGTGAATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
37298254 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
*
37298303 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
37298350 TGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
* *
37298399 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
37298446 CGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * * * *
37298493 TGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATAAA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
37298540 TGTGATAAG
1 TGTGATAAG
37298549 TCCCGATGGG
Statistics
Matches: 359, Mismatches: 26, Indels: 10
0.91 0.07 0.03
Matches are distributed among these distances:
47 224 0.62
48 45 0.13
49 90 0.25
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:37298359 original size:96 final size:94
Alignment explanation
Indices: 37298112--37298548 Score: 676
Period size: 96 Copynumber: 4.6 Consensus size: 94
37298102 AATTCTAAAT
*
37298112 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
37298177 CCGATGTGATGAATGTGAAAGTGTATATA
66 CCGATGTGATGAATGTGAAAGTGTATATA
*
37298206 TGTGAATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
1 TGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
37298271 GCCGATGTGATGAATGTGAAAGTGTATATATA
65 GCCGATGTGATGAATGTGAAAGTG--TATATA
* * *
37298303 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGCGATAAGGCCTAATAG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
37298368 CCGATGTGATGAATGTGAAAGTGTATATATA
66 CCGATGTGATGAATGTGAAAGTG--TATATA
* ** *
37298399 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGCGTGATAAGGCTTAATGG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
37298464 CCGATGTGATGAATGTGAAAGTGTATATA
66 CCGATGTGATGAATGTGAAAGTGTATATA
* * * * * * * *
37298493 TGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
37298549 TCCCGATGGG
Statistics
Matches: 318, Mismatches: 22, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
94 55 0.17
95 82 0.26
96 171 0.54
97 10 0.03
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (94 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
CCGATGTGATGAATGTGAAAGTGTATATA
Found at i:37298453 original size:143 final size:142
Alignment explanation
Indices: 37298112--37298548 Score: 691
Period size: 143 Copynumber: 3.1 Consensus size: 142
37298102 AATTCTAAAT
37298112 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGG
37298177 CCGATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCGATGTGATGAATGTG
66 CCGATGTGATGAATGTGAAAGTGTATATATGTG-ATAGGGCCTAATGGCCGATGTGATGAATGTG
37298242 AAAGTG-TATATA
130 AAAGTGATATATA
*
37298254 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCTTAAT
* * * *
37298319 GGCCGATGTGATGAATGTGAAAGTGTATATGTGCGATAAGGCCTAATAGCCGATGTGATGAATGT
64 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGT
37298384 GAAAGTGTATATATA
129 GAAAGTG-ATATATA
* **
37298399 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGCGTGATAAGGCTTAATGG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGG
* * * * *
37298464 CCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGA
66 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGA
37298529 AAGTGCATA-A-A
131 AAGTG-ATATATA
37298540 TGTGATAAG
1 TGTGATAAG
37298549 TCCCGATGGG
Statistics
Matches: 272, Mismatches: 19, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
141 10 0.04
142 42 0.15
143 120 0.44
144 54 0.20
145 46 0.17
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (142 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGG
CCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGA
AAGTGATATATA
Found at i:37298722 original size:37 final size:37
Alignment explanation
Indices: 37298666--37298744 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
37298656 TCGAGCTCTA
* * *
37298666 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
37298703 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
37298740 AAGAC
1 AAGAC
37298745 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:37300643 original size:43 final size:43
Alignment explanation
Indices: 37300595--37300783 Score: 351
Period size: 43 Copynumber: 4.4 Consensus size: 43
37300585 TTGGTTTTCA
*
37300595 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
37300638 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
37300681 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
* *
37300724 GCACTAAGTGTGCGGGCAATAAGTATTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
37300767 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
37300784 TTGAAATGCA
Statistics
Matches: 143, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 143 1.00
ACGTcount: A:0.23, C:0.16, G:0.35, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
Found at i:37300798 original size:29 final size:29
Alignment explanation
Indices: 37300765--37300838 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
37300755 GTTGTGAGAT
* *
37300765 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
37300794 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
37300823 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
37300839 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:37301176 original size:40 final size:40
Alignment explanation
Indices: 37301132--37301399 Score: 242
Period size: 40 Copynumber: 6.7 Consensus size: 40
37301122 CATTTGAATG
*
37301132 ATATCCGGGCTAAGTCCCGAAGGCAATT-GAGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCAATTCGTGCTAGTGA-T
* * * *
37301172 ATATCCGGGCTAAGACCCGAAGGC-ATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGTCCCGAAGGCAATTCGTGC-TAGTGAT
* *
37301212 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTGAT
1 ATATCCGGGCTAAGTCCCGAAGGCAATTCGTGCTAG-TGAT
* * * *
37301252 ATATCCGGGCTAAGACCCGAAGGC-ATTGGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCAATTCGTGCTAGTGA-T
* * * *
37301292 AAATCCGGGCTAAATTCCGAAGAGC-ATTCGTGCTAGTGAG
1 ATATCCGGGCTAAGTCCCGAAG-GCAATTCGTGCTAGTGAT
* * * * *
37301332 GTATCCGGACTAAGTTCCGAAGAGC-ATTCGTGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAG-GCAATTCGTGCTAGTGAT
*
37301372 ATATCCGGGCTAGGTCCCGAAGAGCAAT
1 ATATCCGGGCTAAGTCCCGAAG-GCAAT
37301400 CATGCTGGTG
Statistics
Matches: 194, Mismatches: 26, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
39 10 0.05
40 162 0.84
41 22 0.11
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCAATTCGTGCTAGTGAT
Found at i:37301345 original size:120 final size:120
Alignment explanation
Indices: 37301132--37301399 Score: 276
Period size: 120 Copynumber: 2.2 Consensus size: 120
37301122 CATTTGAATG
* * *
37301132 ATATCCGGGCTAAGTCCCGAAGGCAATTGAGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCAATTGAGCGAGTGACTAAATCCGGGCTAAGACCCGAAGGCA
* * * * *
37301197 TTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAG-GCAATT-GTGCAAGTTGAT
66 TTCGTGCGAAGTGAGATATCCGGACTAAGACCCGAAGAGC-ATTCGTGC-AGGTGAT
* * * *
37301252 ATATCCGGGCTAAGACCCGAAGGC-ATTGGTGCGAGTTACTAAATCCGGGCTAA-ATTCCGAAGA
1 ATATCCGGGCTAAGTCCCGAAGGCAATT-GAGCGAGTGACTAAATCCGGGCTAAGA-CCCGAAG-
* * ** * *
37301315 GCATTCGTGC-TAGTGAGGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTGGTGTT
63 GCATTCGTGCGAAGTGAGATATCCGGACTAAGACCCGAAGAGCATTCGTGCAGGTGAT
*
37301372 ATATCCGGGCTAGGTCCCGAAGAGCAAT
1 ATATCCGGGCTAAGTCCCGAAG-GCAAT
37301400 CATGCTGGTG
Statistics
Matches: 121, Mismatches: 20, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
119 4 0.03
120 98 0.81
121 17 0.14
122 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (120 bp):
ATATCCGGGCTAAGTCCCGAAGGCAATTGAGCGAGTGACTAAATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAAGTGAGATATCCGGACTAAGACCCGAAGAGCATTCGTGCAGGTGAT
Found at i:37301406 original size:40 final size:40
Alignment explanation
Indices: 37301333--37301409 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
37301323 GCTAGTGAGG
* * *
37301333 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTGGTGTTA
1 TATCCGGACTAAGTCCCGAAGAGCAATCATGCTGGTGTTA
* *
37301373 TATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTG
1 TATCCGGACTAAGTCCCGAAGAGCAATCATGCTGGTG
37301410 ACATGTATTC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (40 bp):
TATCCGGACTAAGTCCCGAAGAGCAATCATGCTGGTGTTA
Found at i:37304748 original size:47 final size:47
Alignment explanation
Indices: 37304685--37305121 Score: 658
Period size: 47 Copynumber: 9.2 Consensus size: 47
37304675 AATTCTAAAT
*
37304685 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
37304732 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
37304779 TGTGAATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
37304827 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
* *
37304876 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
37304923 TGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
* *
37304972 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * *
37305019 CGTGATAAGGCTTAATGGCCGATATGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * * *
37305066 TGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGTATAAA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
37305113 TGTGATAAG
1 TGTGATAAG
37305122 TCCCGATGGG
Statistics
Matches: 355, Mismatches: 30, Indels: 10
0.90 0.08 0.03
Matches are distributed among these distances:
47 221 0.62
48 45 0.13
49 89 0.25
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.30
Consensus pattern (47 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:37304932 original size:96 final size:94
Alignment explanation
Indices: 37304685--37305121 Score: 658
Period size: 96 Copynumber: 4.6 Consensus size: 94
37304675 AATTCTAAAT
* *
37304685 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
37304750 CCGATGTGATGAATGTGAAAGTGTATATA
66 CCGATGTGATGAATGTGAAAGTGTATATA
*
37304779 TGTGAATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
1 TGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
37304844 GCCGATGTGATGAATGTGAAAGTGTATATATA
65 GCCGATGTGATGAATGTGAAAGTG--TATATA
* * * *
37304876 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGCGATAAGGCCTAATAG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
37304941 CCGATGTGATGAATGTGAAAGTGTATATATA
66 CCGATGTGATGAATGTGAAAGTG--TATATA
* ** *
37304972 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGCGTGATAAGGCTTAATGG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
*
37305037 CCGATATGATGAATGTGAAAGTGTATATA
66 CCGATGTGATGAATGTGAAAGTGTATATA
* * * * * * *
37305066 TGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
37305122 TCCCGATGGG
Statistics
Matches: 317, Mismatches: 23, Indels: 6
0.92 0.07 0.02
Matches are distributed among these distances:
94 56 0.18
95 81 0.26
96 170 0.54
97 10 0.03
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.30
Consensus pattern (94 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
CCGATGTGATGAATGTGAAAGTGTATATA
Done.