Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 119 of 316
Found at i:37709037 original size:49 final size:49
Alignment explanation
Indices: 37708910--37709039 Score: 125
Period size: 49 Copynumber: 2.7 Consensus size: 49
37708900 TATACGAGCT
* ** *
37708910 AGTGTAAGACCTGTCTGGGACATGGCATCAACACCGATAGATGAGAGCC
1 AGTGTAAAACCTGTCTGGGACATGGCATTGACACCGATAGATGAAAGCC
* ** * * * * * * *
37708959 AGTGTAAGACCTGTCTAAGACACGACATTGGCCCCGGTATATGAAAGTC
1 AGTGTAAAACCTGTCTGGGACATGGCATTGACACCGATAGATGAAAGCC
*
37709008 AGTTTAAAACCTGTCTGGGACATGGCATTGAC
1 AGTGTAAAACCTGTCTGGGACATGGCATTGAC
37709040 CTTGATATGC
Statistics
Matches: 62, Mismatches: 19, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
49 62 1.00
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.22
Consensus pattern (49 bp):
AGTGTAAAACCTGTCTGGGACATGGCATTGACACCGATAGATGAAAGCC
Found at i:37709577 original size:45 final size:45
Alignment explanation
Indices: 37709528--37709618 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
37709518 TAGCCTAAGA
37709528 ATAAAAGGGCTTGTTTATTAAACTAATTATCTAAACTAATTAACT
1 ATAAAAGGGCTTGTTTATTAAACTAATTATCTAAACTAATTAACT
37709573 ATAAAAGGGCTTGTTTATTAAACTAATTATCTAAACTAATTAACT
1 ATAAAAGGGCTTGTTTATTAAACTAATTATCTAAACTAATTAACT
37709618 A
1 A
37709619 ATTTAATCAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.43, C:0.11, G:0.09, T:0.37
Consensus pattern (45 bp):
ATAAAAGGGCTTGTTTATTAAACTAATTATCTAAACTAATTAACT
Found at i:37709609 original size:13 final size:13
Alignment explanation
Indices: 37709587--37709619 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
37709577 AAGGGCTTGT
37709587 TTAT-TAAACTAA
1 TTATCTAAACTAA
37709599 TTATCTAAACTAA
1 TTATCTAAACTAA
*
37709612 TTAACTAA
1 TTATCTAA
37709620 TTTAATCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:37712548 original size:13 final size:13
Alignment explanation
Indices: 37712519--37712552 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
37712509 TCTTTATAAC
*
37712519 AAAAAATAAACAT
1 AAAAAATAAAAAT
37712532 -AAAAATAAAAAT
1 AAAAAATAAAAAT
37712544 AAAAAATAA
1 AAAAAATAA
37712553 GAGGATTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.15
Consensus pattern (13 bp):
AAAAAATAAAAAT
Found at i:37720745 original size:43 final size:43
Alignment explanation
Indices: 37720691--37720776 Score: 154
Period size: 43 Copynumber: 2.0 Consensus size: 43
37720681 GATCTATGTG
* *
37720691 GCATCCGAGCTCGTTGAGTGGTTTGAGTTCATTATGGATGCGA
1 GCATCCAAGCTCGTTGAGTGGTCTGAGTTCATTATGGATGCGA
37720734 GCATCCAAGCTCGTTGAGTGGTCTGAGTTCATTATGGATGCGA
1 GCATCCAAGCTCGTTGAGTGGTCTGAGTTCATTATGGATGCGA
37720777 TACATGTGAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.20, C:0.17, G:0.31, T:0.31
Consensus pattern (43 bp):
GCATCCAAGCTCGTTGAGTGGTCTGAGTTCATTATGGATGCGA
Found at i:37726098 original size:28 final size:28
Alignment explanation
Indices: 37726052--37726147 Score: 102
Period size: 28 Copynumber: 3.4 Consensus size: 28
37726042 GACGTCTCAT
* * *
37726052 ACACTAAGTTCCATACTCAACATCTCGC
1 ACACTAAGTGCCATGCTCAATATCTCGC
* * * * *
37726080 ACATTAAGTGTCATTCTCAATGTTTCGC
1 ACACTAAGTGCCATGCTCAATATCTCGC
* *
37726108 ACACTAAGTGCCATGCTTAATATCTCGT
1 ACACTAAGTGCCATGCTCAATATCTCGC
37726136 ACACTAAGTGCC
1 ACACTAAGTGCC
37726148 GTACATAGAC
Statistics
Matches: 54, Mismatches: 14, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 54 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.30
Consensus pattern (28 bp):
ACACTAAGTGCCATGCTCAATATCTCGC
Found at i:37726206 original size:40 final size:40
Alignment explanation
Indices: 37726136--37726267 Score: 129
Period size: 40 Copynumber: 3.3 Consensus size: 40
37726126 AATATCTCGT
* * * * *
37726136 ACACTAAGTGCCGTACATAGACGAAACTATCTCGAATCAC
1 ACACTAAGTGCCGTATATAGCCGAAGCTATCTAGAATCGC
** *
37726176 ACACTAAGTGTTGTATATAGCCGAAGCTATCTAGAACCGC
1 ACACTAAGTGCCGTATATAGCCGAAGCTATCTAGAATCGC
* ** * * *
37726216 AGACTAAGTGCCACATTTAGCCGAAGCTATTTTTGAATCGC
1 ACACTAAGTGCCGTATATAGCCGAAGCTA-TCTAGAATCGC
37726257 ACACTAAGTGC
1 ACACTAAGTGC
37726268 TACATTTAGT
Statistics
Matches: 73, Mismatches: 18, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
40 55 0.75
41 18 0.25
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.24
Consensus pattern (40 bp):
ACACTAAGTGCCGTATATAGCCGAAGCTATCTAGAATCGC
Found at i:37732781 original size:20 final size:20
Alignment explanation
Indices: 37732756--37732807 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
37732746 CGGGCTGAGG
*
37732756 ACACGGGCTTGTCCCAAGCC
1 ACACGGGCGTGTCCCAAGCC
*
37732776 ACACGGGCGTGTCCCGAGCC
1 ACACGGGCGTGTCCCAAGCC
37732796 ACACGGGCGTGT
1 ACACGGGCGTGT
37732808 GACTATCTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.17, C:0.37, G:0.33, T:0.13
Consensus pattern (20 bp):
ACACGGGCGTGTCCCAAGCC
Found at i:37740682 original size:495 final size:492
Alignment explanation
Indices: 37739753--37740759 Score: 1687
Period size: 495 Copynumber: 2.0 Consensus size: 492
37739743 GTAAAATGGA
** *
37739753 TTAAAAGACAAATTTTAAACCCCAAATGTGTCCCTTTCTTCTTGCTACAGTAGAATGTACCAAGA
1 TTAAAAGACAAATTTTAAACCCCAAATGTGTCCCTTTCTTCTTGCTACAACAAAATGTACCAAGA
*
37739818 GCAGCCATGGTTAGGGTTTGGCCAAGCTTCCAAGCTTAATAGTAAGTGATTTCGAGCTCCATTTT
66 GCAGCCATGGTTAGGGTTTGGCCAAGCTTCCAAGCTTAACAGTAAGTGATTTCGAGCTCCATTTT
* *
37739883 TAATGTTCTATGTATTTTTGAAATCCTGGTAACATGATCTGCTCATTTCTTCCATTATTTTGAGC
131 TAATGTTCTATGTATTTTTGAAATCCCGGTAACATGATCTGCTCATTTCTACCATTATTTTGAGC
37739948 TAGGATCTACGTTTAAAAATTTACCCATGAATGATATGCATGTATTTTGATGTTTAATGGTAGAA
196 TAGGATCTACGTTTAAAAATTTACCCATGAATGATATGCATGTATTTTGATGTTTAATGGTAGAA
* * * *
37740013 TATGAAGCTTGAAATTGTGTTAAATAACTTTTGCTAAGCGATTTTACGTGGAAACGAGTAGAACG
261 TATGAAGCTTGAAATTGTGTTAAACAACGTTTGCTAAGCGATTTTACGTGAAAACGAGTAAAACG
*
37740078 ACATAATCGGTAAAAATACCTAATGTCCATAAGTACATGTTAGAGTGAGAATTTGATATTGCTAT
326 ACATAATCGGTAAAAATACCTAATGTCCATAAGCACATGTTAGAGTGAGAATTTGATATTGCTAT
*
37740143 AGAAACAAAAAATGACCAGCATGTCATAAAACATAAGGAAATAGGAAGAAGTTTAA-TTTCTGAA
391 AGAAACAAAAAATGACCAGCATGTCATAAAACATAAGAAAATAGGAAGAAGTTTAATTTTC-GAA
*
37740207 CCTTGGGGAAAAAGTGCAAATATGCAAAAGTTTAGGGTG
455 CCTTCGGGAAAAAGTGCAAATATGCAAAAGTTTAGGG-G
37740246 TTAAAAGACAAATTTTAAACCCCAAATGTGTCCCTTTCTTCTTGCTACAACAAAATGTACCAAGA
1 TTAAAAGACAAATTTTAAACCCCAAATGTGTCCCTTTCTTCTTGCTACAACAAAATGTACCAAGA
*
37740311 GCAGCTATGGTTAGGGTTTGGCCAAGCTTCCAAGCTTAACAGTAAGTGA-TTCTGAGCTCCATTT
66 GCAGCCATGGTTAGGGTTTGGCCAAGCTTCCAAGCTTAACAGTAAGTGATTTC-GAGCTCCATTT
*
37740375 TTAATGTTCTATGTATTTTTTTGAAATCCCGGTAATATGATCTGCTCATTTCTACCATTATTTTG
130 TTAATGTTCTATGTA--TTTTTGAAATCCCGGTAACATGATCTGCTCATTTCTACCATTATTTTG
* * *
37740440 AGCTAGGATTTATGTTTAAAAATTTATCCATGAATGATATGCATGTATTTTGATGTTTAATGGTA
193 AGCTAGGATCTACGTTTAAAAATTTACCCATGAATGATATGCATGTATTTTGATGTTTAATGGTA
37740505 GAATATGAAGCTTGAAATTGTGTTAAACAACGTTTGCTAAGCGATTTTACGTGAAAACGAGTAAA
258 GAATATGAAGCTTGAAATTGTGTTAAACAACGTTTGCTAAGCGATTTTACGTGAAAACGAGTAAA
* * *
37740570 ACGACATAATCGGTAAAAATACCTAATGTTCATAAGCACATGTTAGAGTGAGAATTTGATGTTTC
323 ACGACATAATCGGTAAAAATACCTAATGTCCATAAGCACATGTTAGAGTGAGAATTTGATATTGC
** * *
37740635 TATAGAAAGGAAAAATGATCAGCATGTCATAAAACCTAAGAAAATAGGAAGAAGTTTAATTTTCG
388 TATAGAAACAAAAAATGACCAGCATGTCATAAAACATAAGAAAATAGGAAGAAGTTTAATTTTCG
*
37740700 AACCTTCGGGCAAAAGTGCAAATATGCAAAAGTTTAGGGG
453 AACCTTCGGGAAAAAGTGCAAATATGCAAAAGTTTAGGGG
*
37740740 TCAAAATGA-AAATTTATAAA
1 TTAAAA-GACAAATTT-TAAA
37740760 AACATGATTT
Statistics
Matches: 481, Mismatches: 27, Indels: 10
0.93 0.05 0.02
Matches are distributed among these distances:
492 3 0.01
493 135 0.28
494 12 0.02
495 327 0.68
496 4 0.01
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (492 bp):
TTAAAAGACAAATTTTAAACCCCAAATGTGTCCCTTTCTTCTTGCTACAACAAAATGTACCAAGA
GCAGCCATGGTTAGGGTTTGGCCAAGCTTCCAAGCTTAACAGTAAGTGATTTCGAGCTCCATTTT
TAATGTTCTATGTATTTTTGAAATCCCGGTAACATGATCTGCTCATTTCTACCATTATTTTGAGC
TAGGATCTACGTTTAAAAATTTACCCATGAATGATATGCATGTATTTTGATGTTTAATGGTAGAA
TATGAAGCTTGAAATTGTGTTAAACAACGTTTGCTAAGCGATTTTACGTGAAAACGAGTAAAACG
ACATAATCGGTAAAAATACCTAATGTCCATAAGCACATGTTAGAGTGAGAATTTGATATTGCTAT
AGAAACAAAAAATGACCAGCATGTCATAAAACATAAGAAAATAGGAAGAAGTTTAATTTTCGAAC
CTTCGGGAAAAAGTGCAAATATGCAAAAGTTTAGGGG
Found at i:37741365 original size:48 final size:47
Alignment explanation
Indices: 37741288--37741484 Score: 191
Period size: 47 Copynumber: 4.4 Consensus size: 47
37741278 ATGAAAAAAT
* * *
37741288 GTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGTAAC
1 GTGGTGCTAAGTGGATATTCCATGGTTACACATATTGATACAT-TAAC
* * *
37741336 ATGGTGCTAAGTGGATATTCCATGGTTACATATATTGATTCATTAAC
1 GTGGTGCTAAGTGGATATTCCATGGTTACACATATTGATACATTAAC
* *
37741383 GTGGTGCTAAGTGGATA-T--A-----ACAC--GTT-AAACATGTAAC
1 GTGGTGCTAAGTGGATATTCCATGGTTACACATATTGATACAT-TAAC
* * *
37741420 GTGGTGCTAAGTGGATATGCCATGGTTACATATATTGATTCATTAAC
1 GTGGTGCTAAGTGGATATTCCATGGTTACACATATTGATACATTAAC
*
37741467 GTGGTGCAAAGTGGATAT
1 GTGGTGCTAAGTGGATAT
37741485 ACCACAGTTA
Statistics
Matches: 120, Mismatches: 17, Indels: 25
0.74 0.10 0.15
Matches are distributed among these distances:
36 4 0.03
37 23 0.19
39 3 0.03
40 1 0.01
44 1 0.01
45 3 0.03
46 1 0.01
47 43 0.36
48 41 0.34
ACGTcount: A:0.31, C:0.13, G:0.23, T:0.32
Consensus pattern (47 bp):
GTGGTGCTAAGTGGATATTCCATGGTTACACATATTGATACATTAAC
Found at i:37741468 original size:84 final size:85
Alignment explanation
Indices: 37741327--37741525 Score: 339
Period size: 84 Copynumber: 2.4 Consensus size: 85
37741317 ACATATTGAT
* * *
37741327 ACATGTAACATGGTGCTAAGTGGATATTCCATGGTTACATATATTGATTCATTAACGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCATGGTTACATATATTGATTCATTAACGTGGTGCAA
37741392 AGTGGATATAACAC-GTTAA
66 AGTGGATATAACACAGTTAA
37741411 ACATGTAACGTGGTGCTAAGTGGATATGCCATGGTTACATATATTGATTCATTAACGTGGTGCAA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCATGGTTACATATATTGATTCATTAACGTGGTGCAA
*
37741476 AGTGGATATACCACAGTTAA
66 AGTGGATATAACACAGTTAA
*
37741496 AAATGTAACGTGGTGCT-AGTGGATATGCCA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCA
37741526 CTGTTATACA
Statistics
Matches: 109, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
84 88 0.81
85 21 0.19
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.31
Consensus pattern (85 bp):
ACATGTAACGTGGTGCTAAGTGGATATGCCATGGTTACATATATTGATTCATTAACGTGGTGCAA
AGTGGATATAACACAGTTAA
Found at i:37743029 original size:34 final size:34
Alignment explanation
Indices: 37742982--37743049 Score: 118
Period size: 34 Copynumber: 2.0 Consensus size: 34
37742972 AAGAAAATTA
37742982 GTTAAGTTGCCCAAAGATTTTCAACGTTCTTGGT
1 GTTAAGTTGCCCAAAGATTTTCAACGTTCTTGGT
* *
37743016 GTTAAGTTTCCCAAAGATTTTCAATGTTCTTGGT
1 GTTAAGTTGCCCAAAGATTTTCAACGTTCTTGGT
37743050 TTAGTCTCGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.24, C:0.16, G:0.19, T:0.41
Consensus pattern (34 bp):
GTTAAGTTGCCCAAAGATTTTCAACGTTCTTGGT
Found at i:37744830 original size:15 final size:15
Alignment explanation
Indices: 37744810--37744850 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
37744800 GCTGTAAATG
37744810 GGATTTCCTTATCAT
1 GGATTTCCTTATCAT
* *
37744825 GGATTTCTTTATCTT
1 GGATTTCCTTATCAT
37744840 GGATTTCCTTA
1 GGATTTCCTTA
37744851 CTCTGGGCTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.17, C:0.17, G:0.15, T:0.51
Consensus pattern (15 bp):
GGATTTCCTTATCAT
Found at i:37746700 original size:42 final size:42
Alignment explanation
Indices: 37746639--37746730 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
37746629 TGGCCCATAG
* *
37746639 GCCTATTTCAATAACACATGAAATATCAATGAATGTATGCAA
1 GCCTATTTCAATAACACATGAAATACCAATGAATGTATACAA
**
37746681 GCCTATTTCAATATTACATGAAATACCAATGAATGTATACAA
1 GCCTATTTCAATAACACATGAAATACCAATGAATGTATACAA
*
37746723 GCCCATTT
1 GCCTATTT
37746731 GGGGAGACTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.30
Consensus pattern (42 bp):
GCCTATTTCAATAACACATGAAATACCAATGAATGTATACAA
Found at i:37746903 original size:25 final size:25
Alignment explanation
Indices: 37746875--37746994 Score: 170
Period size: 25 Copynumber: 4.8 Consensus size: 25
37746865 CTCTTTTAAT
*
37746875 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTTGGTA
37746900 AACTGGGGCAAAGCCCTTTTTGGTA
1 AACTGGGGCAAAGCCCTTTTTGGTA
* *
37746925 AACTGGGGCGAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTTGGTA
* *
37746950 AACTGGGGTAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTTGGTA
* *
37746975 AACTAGGGCATAG-CCTTTTT
1 AACTGGGGCAAAGCCCTTTTT
37746995 AGCACTTCCT
Statistics
Matches: 86, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
24 6 0.07
25 80 0.93
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTTGGTA
Found at i:37747845 original size:27 final size:27
Alignment explanation
Indices: 37747810--37747882 Score: 103
Period size: 27 Copynumber: 2.7 Consensus size: 27
37747800 TTCGTCATTG
*
37747810 TACCATACAGGGG-TATTACAATCACTT
1 TACCCTACAGGGGCT-TTACAATCACTT
**
37747837 TACCCTACAGGGGCTTTACGGTCACTT
1 TACCCTACAGGGGCTTTACAATCACTT
37747864 TACCCTACAGGGGCTTTAC
1 TACCCTACAGGGGCTTTAC
37747883 GGTCTTTTAC
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
27 41 0.98
28 1 0.02
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (27 bp):
TACCCTACAGGGGCTTTACAATCACTT
Found at i:37747902 original size:26 final size:27
Alignment explanation
Indices: 37747831--37747886 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
37747821 GGTATTACAA
37747831 TCACTTTACCCTACAGGGGCTTTACGG
1 TCACTTTACCCTACAGGGGCTTTACGG
37747858 TCACTTTACCCTACAGGGGCTTTACGG
1 TCACTTTACCCTACAGGGGCTTTACGG
37747885 TC
1 TC
37747887 TTTTACCTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.18, C:0.30, G:0.21, T:0.30
Consensus pattern (27 bp):
TCACTTTACCCTACAGGGGCTTTACGG
Found at i:37747977 original size:27 final size:27
Alignment explanation
Indices: 37747924--37748255 Score: 203
Period size: 27 Copynumber: 12.3 Consensus size: 27
37747914 TTTCATCCTA
* * * *
37747924 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
37747951 CAAGGGTATTTTAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
37747978 CAATGGTATTTCT-ATAATTTTTAGAAAC
1 CAAGGGTATTT-TGGTAA-TTTTATAAAC
* * *
37748006 TCAAGGGTGTTTCT-GTAACTTTGT-AAC
1 -CAAGGGTATTT-TGGTAATTTTATAAAC
* * *
37748033 TCAGGGGTATTTTGGTAATTTTACAAAT
1 -CAAGGGTATTTTGGTAATTTTATAAAC
* * * * *
37748061 TAAGGGTATTTCGGTAGTTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
37748088 C-AGTGGTATTTTGGTAATTTTACAAA-
1 CAAG-GGTATTTTGGTAATTTTATAAAC
* *
37748114 CTAGGAGTATTTTGGTAATTTTACAAAC
1 CAAGG-GTATTTTGGTAATTTTATAAAC
* * * * * *
37748142 TAGGGGTA-TTTAGCAATTTTACAGAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
**
37748168 C-AGGGTATTTTGGTAATTTTATTGA-
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
37748193 TAGAGGGTATTTTGGTAATTTTGTAAAC
1 CA-AGGGTATTTTGGTAATTTTATAAAC
* * *
37748221 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
37748248 CGAGGGTA
1 CAAGGGTA
37748256 AATAGTAATT
Statistics
Matches: 240, Mismatches: 52, Indels: 26
0.75 0.16 0.08
Matches are distributed among these distances:
25 5 0.02
26 33 0.14
27 171 0.71
28 17 0.07
29 14 0.06
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAC
Found at i:37748135 original size:81 final size:79
Alignment explanation
Indices: 37748030--37748240 Score: 235
Period size: 79 Copynumber: 2.6 Consensus size: 79
37748020 GTAACTTTGT
* * * *
37748030 AACTCAGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAGTTTCACAAACCAGTGGT
1 AACT-AGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT-AGCAATTTCACAAACCAG-GGT
37748095 ATTTTGGTAATTTTACA
63 ATTTTGGTAATTTTACA
* * * *
37748112 AACTAGGAGTATTTTGGTAATTTTACAAACTAGGGGTATTTAGCAATTTTACAGACCAGGGTATT
1 AACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTAGCAATTTCACAAACCAGGGTATT
**
37748177 TTGGTAATTTTATT
66 TTGGTAATTTTACA
* ** * *
37748191 GA-TAGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTT
1 AACTAG-GGGTATTTTGGTAATTTTACAAACTAAGGGTA-TTTAGCAATTT
37748241 TGTAAATCGA
Statistics
Matches: 110, Mismatches: 17, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
78 3 0.03
79 46 0.42
80 23 0.21
81 34 0.31
82 4 0.04
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (79 bp):
AACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTAGCAATTTCACAAACCAGGGTATT
TTGGTAATTTTACA
Found at i:37748253 original size:54 final size:54
Alignment explanation
Indices: 37747926--37748308 Score: 199
Period size: 54 Copynumber: 7.1 Consensus size: 54
37747916 TCATCCTACA
* * * * * * *
37747926 AGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTTAGTAATTTTGTAAACCA
1 AGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTATAAATCG
* * * * * * *
37747980 ATGGTATTTCT-ATAATTTTTAGAAACTCAAGGGTGTTTCT-GTAACTTTGTAACTC-
1 AGGGTATTT-TGGTAA-TTTTATAAAC-CAAGGGTATTT-TAGTAATTTTATAAATCG
* ** ** * * * *
37748035 AGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAGTTTCACAAA-CC
1 A-GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTATAAATCG
* * * * *
37748089 AGTGGTATTTTGGTAATTTTACAAA-CTAGGAGTATTTTGGTAATTTTACAAA-CT
1 AG-GGTATTTTGGTAATTTTATAAACCAAGG-GTATTTTAGTAATTTTATAAATCG
* * * * * ** *
37748143 AGGGGTA-TTTAGCAATTTTACAGACC-AGGGTATTTTGGTAATTTTATTGATAG
1 A-GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTATAAATCG
* *
37748196 AGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTATAAATCG
** * * * * *** *
37748250 AGGGTA-AATAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCG
1 AGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTATAAATCG
37748303 AGGGTA
1 AGGGTA
37748309 AAACGGTAAT
Statistics
Matches: 257, Mismatches: 57, Indels: 31
0.74 0.17 0.09
Matches are distributed among these distances:
52 23 0.09
53 80 0.31
54 102 0.40
55 19 0.07
56 32 0.12
57 1 0.00
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (54 bp):
AGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTATAAATCG
Found at i:37748293 original size:27 final size:27
Alignment explanation
Indices: 37748233--37748389 Score: 199
Period size: 27 Copynumber: 5.9 Consensus size: 27
37748223 AGGGTATTTT
* * *
37748233 AGTAATTTTGTAAATCGAGGGT-AAAT
1 AGTAATTCTGTAAATCAAGGGTAAAAC
*
37748259 AGTAATTCTGTAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* *
37748286 AGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
*
37748313 GGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* *
37748340 GGTAATTCTGTAAGTCAAGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* * *
37748367 GGTAATTCTATAAATCGAGGGTA
1 AGTAATTCTGTAAATCAAGGGTA
37748390 CTTTGGTAAT
Statistics
Matches: 118, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
26 20 0.17
27 98 0.83
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (27 bp):
AGTAATTCTGTAAATCAAGGGTAAAAC
Found at i:37748372 original size:81 final size:80
Alignment explanation
Indices: 37748234--37748389 Score: 242
Period size: 81 Copynumber: 1.9 Consensus size: 80
37748224 GGGTATTTTA
* * *
37748234 GTAATTTTGTAAATCGAGGGTAAATAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAA
1 GTAATTCTGTAAATCAAGGGTAAATAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAA
37748299 ATCGAGGGTAAAACG
66 ATCGAGGGTAAAACG
* *
37748314 GTAATTCTGTAAATCAAGGGTAAA-ACGGTAATTCTGTAAGTCAAGGGTAAAACGGTAATTCTAT
1 GTAATTCTGTAAATCAAGGGTAAATA--GTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTAT
37748378 AAATCGAGGGTA
64 AAATCGAGGGTA
37748390 CTTTGGTAAT
Statistics
Matches: 69, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
79 1 0.01
80 22 0.32
81 46 0.67
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (80 bp):
GTAATTCTGTAAATCAAGGGTAAATAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAA
ATCGAGGGTAAAACG
Found at i:37748398 original size:81 final size:80
Alignment explanation
Indices: 37748223--37748400 Score: 232
Period size: 81 Copynumber: 2.2 Consensus size: 80
37748213 TTGTAAACCA
* * * * *
37748223 AGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAATAGTAATTCTGTAAATCAAGGGTAAAATAG
1 AGGGTAATTTGGTAATTCTGTAAATCAAGGGTAAATAGTAATTCTGTAAATCAAGGGTAAAACAG
37748288 TAATTCTATAAATCG
66 TAATTCTATAAATCG
*** *
37748303 AGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAA-ACGGTAATTCTGTAAGTCAAGGGTAAAAC
1 AGGGTAATTTGGTAATTCTGTAAATCAAGGGTAAATA--GTAATTCTGTAAATCAAGGGTAAAAC
*
37748367 GGTAATTCTATAAATCG
64 AGTAATTCTATAAATCG
*
37748384 AGGGTACTTTGGTAATT
1 AGGGTAATTTGGTAATT
37748401 TTACAAGTCG
Statistics
Matches: 82, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
79 1 0.01
80 28 0.34
81 53 0.65
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.31
Consensus pattern (80 bp):
AGGGTAATTTGGTAATTCTGTAAATCAAGGGTAAATAGTAATTCTGTAAATCAAGGGTAAAACAG
TAATTCTATAAATCG
Found at i:37748400 original size:54 final size:54
Alignment explanation
Indices: 37748206--37748389 Score: 228
Period size: 54 Copynumber: 3.4 Consensus size: 54
37748196 AGGGTATTTT
* * *** *
37748206 GGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAATA-
1 GGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAA-AC
*
37748260 -GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAAC
1 GGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAAC
** * *
37748313 GGTAATTCTGTAAATCAAGGGTAAAACGGTAATTCTGTAAGTCAAGGGTAAAAC
1 GGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAAC
* *
37748367 GGTAATTCTATAAATCGAGGGTA
1 GGTAATTCTGTAAATCAAGGGTA
37748390 CTTTGGTAAT
Statistics
Matches: 114, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
52 1 0.01
53 44 0.39
54 69 0.61
ACGTcount: A:0.39, C:0.09, G:0.22, T:0.30
Consensus pattern (54 bp):
GGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:37751276 original size:47 final size:48
Alignment explanation
Indices: 37751153--37751291 Score: 199
Period size: 48 Copynumber: 2.9 Consensus size: 48
37751143 TACGACAGTT
* * * *
37751153 ATACGTGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCATGGTTACATATATTG
* *
37751201 ATACATGTAACGTGGTGCTAGGTGGATATGCCATGGTTACATATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCATGGTTACATATATTG
* *
37751249 ATTCAT-TAACGTGGTGCTAAGTGGATATACCATGGTTAAATAT
1 ATACATGTAACGTGGTGCTAAGTGGATATACCATGGTTACATAT
37751292 GTAGCGTGGT
Statistics
Matches: 81, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
47 34 0.42
48 47 0.58
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (48 bp):
ATACATGTAACGTGGTGCTAAGTGGATATACCATGGTTACATATATTG
Found at i:37753925 original size:18 final size:18
Alignment explanation
Indices: 37753902--37753939 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
37753892 GGTTTTTCTT
37753902 AAATGAAAGATTTAAACA
1 AAATGAAAGATTTAAACA
37753920 AAATGAAAGATTTAAACA
1 AAATGAAAGATTTAAACA
37753938 AA
1 AA
37753940 CTTCAAAACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.63, C:0.05, G:0.11, T:0.21
Consensus pattern (18 bp):
AAATGAAAGATTTAAACA
Found at i:37756578 original size:20 final size:20
Alignment explanation
Indices: 37756536--37756578 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
37756526 CATGGATGTA
*
37756536 TATGCTAGAAATTAGAAATT
1 TATGCTAGAAAATAGAAATT
*
37756556 TATGGTAGAAAAT-GAAATAT
1 TATGCTAGAAAATAGAAAT-T
37756576 TAT
1 TAT
37756579 TGATAGATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.47, C:0.02, G:0.16, T:0.35
Consensus pattern (20 bp):
TATGCTAGAAAATAGAAATT
Found at i:37756662 original size:19 final size:19
Alignment explanation
Indices: 37756638--37756681 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
37756628 AGGGACTAAA
*
37756638 ATGAAAGTTGTAAAATTTG
1 ATGAAAGTTCTAAAATTTG
* *
37756657 ATGAAAATTTCTAAAATTTT
1 ATG-AAAGTTCTAAAATTTG
37756677 ATGAA
1 ATGAA
37756682 TACATGTGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.45, C:0.02, G:0.14, T:0.39
Consensus pattern (19 bp):
ATGAAAGTTCTAAAATTTG
Found at i:37764453 original size:28 final size:28
Alignment explanation
Indices: 37764422--37764513 Score: 139
Period size: 28 Copynumber: 3.3 Consensus size: 28
37764412 GTGATAGAGT
* * * **
37764422 CACCAGATACAGATAATTGTAGCAGGGC
1 CACCAGAAACAGATATTTGTGGCAAAGC
37764450 CACCAGAAACAGATATTTGTGGCAAAGC
1 CACCAGAAACAGATATTTGTGGCAAAGC
37764478 CACCAGAAACAGATATTTGTGGCAAAGC
1 CACCAGAAACAGATATTTGTGGCAAAGC
37764506 CACCAGAA
1 CACCAGAA
37764514 CGCTTCCTCC
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 59 1.00
ACGTcount: A:0.39, C:0.23, G:0.22, T:0.16
Consensus pattern (28 bp):
CACCAGAAACAGATATTTGTGGCAAAGC
Found at i:37765763 original size:18 final size:18
Alignment explanation
Indices: 37765719--37765767 Score: 53
Period size: 20 Copynumber: 2.6 Consensus size: 18
37765709 TATAGAGGAA
*
37765719 AAGAAGAAGAAGAAGAAAT
1 AAGAAG-AGAAGAAAAAAT
*
37765738 AGATGAAGAGAGGAAAAAAT
1 A-A-GAAGAGAAGAAAAAAT
37765758 AAGAAGAGAA
1 AAGAAGAGAA
37765768 AAGAATTGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
18 7 0.28
19 2 0.08
20 12 0.48
21 4 0.16
ACGTcount: A:0.65, C:0.00, G:0.29, T:0.06
Consensus pattern (18 bp):
AAGAAGAGAAGAAAAAAT
Found at i:37766902 original size:27 final size:27
Alignment explanation
Indices: 37766886--37767350 Score: 689
Period size: 27 Copynumber: 17.2 Consensus size: 27
37766876 TAATTTGTAA
*
37766886 AATTACCGTTTTACCCTCGATTTACAG
1 AATTACCGTTTTACCCTCGATTTATAG
37766913 AATTACCGTTTTACCCTCGATTTATAG
1 AATTACCGTTTTACCCTCGATTTATAG
*
37766940 AATTACCATTTTACCCTCGATTTATAG
1 AATTACCGTTTTACCCTCGATTTATAG
* * *
37766967 AATTATCGTTTTACCCTCAATTTACAG
1 AATTACCGTTTTACCCTCGATTTATAG
*
37766994 AATTACCATTTTACCCTCGATTTATAG
1 AATTACCGTTTTACCCTCGATTTATAG
*
37767021 AATTACCGTTTTACCCTCGATTTAAAG
1 AATTACCGTTTTACCCTCGATTTATAG
*
37767048 AATTACCGTTTTACCCTCAATTTATAG
1 AATTACCGTTTTACCCTCGATTTATAG
* * * *
37767075 AATTACCATTTTACCTTTGATTTACAG
1 AATTACCGTTTTACCCTCGATTTATAG
37767102 AATTACCGTTTTACCCTCGATTTATAG
1 AATTACCGTTTTACCCTCGATTTATAG
*
37767129 AATTACCAG-TTTACCCTCGATTTACAG
1 AATTACC-GTTTTACCCTCGATTTATAG
* *
37767156 AATTATCGTTTTACCCTCAATTTATAG
1 AATTACCGTTTTACCCTCGATTTATAG
*
37767183 AATTACCATTTTACCCTCGATTTATAG
1 AATTACCGTTTTACCCTCGATTTATAG
* *
37767210 AATTATCGTTTTACCCTCAATTTATAG
1 AATTACCGTTTTACCCTCGATTTATAG
*
37767237 AATTACCATTTTACCCTCGATTTATAG
1 AATTACCGTTTTACCCTCGATTTATAG
37767264 AATTACCGTTTTACCCTCGATTTATAG
1 AATTACCGTTTTACCCTCGATTTATAG
*
37767291 AATTACCGTTTTACCCTCGATTTACAG
1 AATTACCGTTTTACCCTCGATTTATAG
*** * *
37767318 AATTACTAATTTACCCTCGATTTACAA
1 AATTACCGTTTTACCCTCGATTTATAG
37767345 AATTAC
1 AATTAC
37767351 TAAAATACCC
Statistics
Matches: 394, Mismatches: 42, Indels: 4
0.90 0.10 0.01
Matches are distributed among these distances:
26 1 0.00
27 392 0.99
28 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.40
Consensus pattern (27 bp):
AATTACCGTTTTACCCTCGATTTATAG
Found at i:37767359 original size:27 final size:27
Alignment explanation
Indices: 37767221--37767536 Score: 143
Period size: 27 Copynumber: 11.7 Consensus size: 27
37767211 ATTATCGTTT
* * * ***
37767221 TACCCTCAATTTATAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACTAAAA
* *****
37767248 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACTAAAA
* *****
37767275 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACTAAAA
* * **
37767302 TACCCTCGATTTACAGAATTACTAATT
1 TACCCTCGATTTATAAAATTACTAAAA
*
37767329 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* * *
37767356 TACCCTTGGTTTATAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* ** *
37767383 TACCCTTGATCAATAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* *
37767410 TACCC-CTGGTTTGTAAAATTACTAAAA
1 TACCCTC-GATTTATAAAATTACTAAAA
* * **
37767437 TACCC-CTGGTTTGTAAAATTACCGAAA
1 TACCCTC-GATTTATAAAATTACTAAAA
* * ** * *
37767464 TGCCCTTGGCTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* * * * *
37767491 TACTCTTGATTTGTGAAATTA-TCGAAA
1 TACCCTCGATTTATAAAATTACT-AAAA
* *
37767518 TACTCTCGATTTGTAAAAT
1 TACCCTCGATTTATAAAAT
37767537 ATCGAAATAC
Statistics
Matches: 249, Mismatches: 37, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
27 249 1.00
ACGTcount: A:0.35, C:0.20, G:0.09, T:0.35
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACTAAAA
Found at i:37767454 original size:54 final size:54
Alignment explanation
Indices: 37767329--37767536 Score: 218
Period size: 54 Copynumber: 3.9 Consensus size: 54
37767319 ATTACTAATT
* ** * *
37767329 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAA
1 TACCCTTGATTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
*** * *
37767383 TACCCTTGATCAATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAA
1 TACCCTTGATTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
* * * * *
37767437 TACCCCTGGTTTGTAAAATTACCGAAATGCCCTTGGCTTGTAAAATTACCAAAA
1 TACCCTTGATTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
* * * * * * *
37767491 TACTCTTGATTTGTGAAATTATCGAAATACTCTCGATTTGTAAAAT
1 TACCCTTGATTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAAT
37767537 ATCGAAATAC
Statistics
Matches: 126, Mismatches: 28, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 126 1.00
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (54 bp):
TACCCTTGATTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
Found at i:37767520 original size:81 final size:81
Alignment explanation
Indices: 37767343--37767511 Score: 223
Period size: 81 Copynumber: 2.1 Consensus size: 81
37767333 CTCGATTTAC
*
37767343 AAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCTTGATCAATAAAATTACCAA
1 AAAATTACTAAAATACCCCTGGTTTATAAAATTACCAAAATACCCTTGATCAATAAAATTACCAA
*
37767408 AATACCCCTGGTTTGT
66 AATACCCCTGATTTGT
* * * * **
37767424 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCGAAATGCCCTTG-GCTTGTAAAATTACCA
1 AAAATTACTAAAATACCCCTGGTTTATAAAATTACCAAAATACCCTTGATC-AATAAAATTACCA
* *
37767488 AAATACTCTTGATTTGT
65 AAATACCCCTGATTTGT
*
37767505 GAAATTA
1 AAAATTA
37767512 TCGAAATACT
Statistics
Matches: 76, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
80 1 0.01
81 75 0.99
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (81 bp):
AAAATTACTAAAATACCCCTGGTTTATAAAATTACCAAAATACCCTTGATCAATAAAATTACCAA
AATACCCCTGATTTGT
Found at i:37767531 original size:81 final size:80
Alignment explanation
Indices: 37767343--37767544 Score: 194
Period size: 81 Copynumber: 2.5 Consensus size: 80
37767333 CTCGATTTAC
* * * * * * **
37767343 AAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCTT-GATCAATAAAATTACCA
1 AAAATTACTAAAATACCCCTGATTTGTAAAA-TACCGAAATGCCCTTGGCT-TGTAAAATTACCA
*
37767407 AAATACCCCTGGTTTGT
64 AAATACCCCTGATTTGT
*
37767424 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCGAAATGCCCTTGGCTTGTAAAATTACCAA
1 AAAATTACTAAAATACCCCTGATTTGTAAAA-TACCGAAATGCCCTTGGCTTGTAAAATTACCAA
* *
37767489 AATACTCTTGATTTGT
65 AATACCCCTGATTTGT
* * * *
37767505 GAAATTA-TCGAAATA-CTCTCGATTTGTAAAATATCGAAAT
1 AAAATTACT-AAAATACCCCT-GATTTGTAAAATACCGAAAT
37767545 ACCCCTGTAG
Statistics
Matches: 103, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
80 12 0.12
81 89 0.86
82 2 0.02
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (80 bp):
AAAATTACTAAAATACCCCTGATTTGTAAAATACCGAAATGCCCTTGGCTTGTAAAATTACCAAA
ATACCCCTGATTTGT
Found at i:37767546 original size:26 final size:26
Alignment explanation
Indices: 37767474--37767546 Score: 92
Period size: 27 Copynumber: 2.7 Consensus size: 26
37767464 TGCCCTTGGC
* * *
37767474 TTGTAAAATTACCAAAATACTCTTGAT
1 TTGTAAAA-TATCGAAATACTCTCGAT
*
37767501 TTGTGAAATTATCGAAATACTCTCGAT
1 TTGT-AAAATATCGAAATACTCTCGAT
37767528 TTGTAAAATATCGAAATAC
1 TTGTAAAATATCGAAATAC
37767547 CCCTGTAGGG
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
26 14 0.35
27 23 0.57
28 3 0.08
ACGTcount: A:0.40, C:0.14, G:0.11, T:0.36
Consensus pattern (26 bp):
TTGTAAAATATCGAAATACTCTCGAT
Found at i:37767605 original size:27 final size:27
Alignment explanation
Indices: 37767540--37767752 Score: 286
Period size: 27 Copynumber: 8.0 Consensus size: 27
37767530 GTAAAATATC
37767540 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
37767567 -AAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
* *
37767593 GAAATAACCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACT
* *
37767620 GAAATACCCCTATAAGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
* *
37767647 GAAATACCCCTATAGCGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
* * *
37767674 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACT
*
37767701 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACT
* * * *
37767728 G-AGTACCCTTGTGGGGTAAAATTAC
1 GAAATACCCCTGTAGGGTAGAATTAC
37767753 CATTTTGCCC
Statistics
Matches: 166, Mismatches: 19, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
26 46 0.28
27 120 0.72
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACT
Found at i:37767992 original size:25 final size:25
Alignment explanation
Indices: 37767958--37768027 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
37767948 AGGAAGTGCT
*
37767958 AAAAGGGCTTTGCCCCAGTTTA-CTG
1 AAAAGGGCTTTGCCCCAGTTTATC-A
*
37767983 AAAAGGGCTTTGCCCCAATTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
* *
37768008 AAAATGACTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
37768028 ATTGAAAGAG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
25 38 0.97
26 1 0.03
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:37770148 original size:27 final size:27
Alignment explanation
Indices: 37769629--37770137 Score: 748
Period size: 27 Copynumber: 18.8 Consensus size: 27
37769619 ATTATTGAAA
* * * *
37769629 TACCCTCAATTTGTAAAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
*
37769656 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
37769683 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
** * *
37769710 TACCCTCGATTTGCAGAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
37769737 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
37769764 TACTCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
37769791 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
*
37769818 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
37769845 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
** * *
37769872 TACCCTCGATTTGCAGAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
37769899 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
37769926 TACCCTCAATTTATAGAAATTACCATTT
1 TACCCTCGATTTATAG-AATTACCATTT
37769954 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
37769981 TACCCTTGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
37770008 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
37770035 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
**
37770062 TACCCTCGATTTATAGAATTATTATTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
37770089 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
37770116 TACCCTCGATTTATAAAATTAC
1 TACCCTCGATTTATAGAATTAC
37770138 TAAAATACCC
Statistics
Matches: 436, Mismatches: 45, Indels: 2
0.90 0.09 0.00
Matches are distributed among these distances:
27 410 0.94
28 26 0.06
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTT
Found at i:37770155 original size:27 final size:27
Alignment explanation
Indices: 37770125--37770300 Score: 138
Period size: 27 Copynumber: 6.9 Consensus size: 27
37770115 TTACCCTCGA
*
37770125 TTTATAAAATTACTAAAATACCCTTAG
1 TTTATAAAATTACCAAAATACCCTTAG
* *
37770152 TTTACAAAATTACCAAAATACCCTCAG
1 TTTATAAAATTACCAAAATACCCTTAG
* *
37770179 TTTACAAAATTACCAAAATACCC-TCG
1 TTTATAAAATTACCAAAATACCCTTAG
* * *
37770205 ---AT--CAGT---AAAATACCTC-TGG
1 TTTATAAAATTACCAAAATACC-CTTAG
* * *
37770224 TTTGTAAAATTACTAAAATACCCCTAG
1 TTTATAAAATTACCAAAATACCCTTAG
* *
37770251 TTTGTAAAATTACCAAAATACCCTTGG
1 TTTATAAAATTACCAAAATACCCTTAG
* *
37770278 CTTGTAAAATTACCAAAATACCC
1 TTTATAAAATTACCAAAATACCC
37770301 CTAATTTGTG
Statistics
Matches: 122, Mismatches: 17, Indels: 20
0.77 0.11 0.13
Matches are distributed among these distances:
18 8 0.07
19 3 0.02
21 2 0.02
22 1 0.01
23 1 0.01
24 2 0.02
26 2 0.02
27 103 0.84
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.30
Consensus pattern (27 bp):
TTTATAAAATTACCAAAATACCCTTAG
Found at i:37770174 original size:54 final size:53
Alignment explanation
Indices: 37769899--37770341 Score: 159
Period size: 54 Copynumber: 8.4 Consensus size: 53
37769889 ATTATCGTTT
* * *** * * ***
37769899 TACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTATAGAAATTACCATTT
1 TACCCTCGATTTATAAAATTACTAAAATACCCT-AGTTTACA-AAATTACCAAAA
* * *** * * * ***
37769954 TACCCTCGATTTATAGAATTACCATTTTACCCTTGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACTAAAATACCCTAG-TTTACAAAATTACCAAAA
* * *** * * ****
37770008 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACTAAAATACCCTAG-TTTACAAAATTACCAAAA
* * *** * ***
37770062 TACCCTCGATTTATAGAATTATTATTTTACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTATAAAATTACTAAAATACCCTAG-TTTACAAAATTACCAAAA
37770116 TACCCTCGATTTATAAAATTACTAAAATACCCTTAGTTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACTAAAATACCC-TAGTTTACAAAATTACCAAAA
* * * * *
37770170 TACCCTC-AGTTTACAAAATTACCAAAATACCCTCG-AT-C---AGT---AAAA
1 TACCCTCGA-TTTATAAAATTACTAAAATACCCTAGTTTACAAAATTACCAAAA
* * **
37770215 TA-CCTCTGGTTTGTAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTC-GATTTATAAAATTACTAAAATA-CCCTAGTTTACAAAATTACCAAAA
* ** * * * *** * *
37770269 TACCCTTGGCTTGTAAAATTACCAAAATACCCCTAATTTGTGAAATTATCGAAA
1 TACCCTCGATTTATAAAATTACTAAAATA-CCCTAGTTTACAAAATTACCAAAA
* *
37770323 TACTCTCGATTTGTAAAAT
1 TACCCTCGATTTATAAAAT
37770342 ATCGAAATAC
Statistics
Matches: 330, Mismatches: 43, Indels: 31
0.82 0.11 0.08
Matches are distributed among these distances:
44 4 0.01
45 23 0.07
46 5 0.02
47 1 0.00
48 2 0.01
51 3 0.01
52 1 0.00
53 3 0.01
54 244 0.74
55 44 0.13
ACGTcount: A:0.35, C:0.21, G:0.07, T:0.36
Consensus pattern (53 bp):
TACCCTCGATTTATAAAATTACTAAAATACCCTAGTTTACAAAATTACCAAAA
Found at i:37770309 original size:27 final size:27
Alignment explanation
Indices: 37770224--37770355 Score: 124
Period size: 27 Copynumber: 4.9 Consensus size: 27
37770214 ATACCTCTGG
* *
37770224 TTTGTAAAATTACTAAAATACCCCTAG
1 TTTGTAAAATTACCAAAATACCCCTAA
* **
37770251 TTTGTAAAATTACCAAAATACCCTTGG
1 TTTGTAAAATTACCAAAATACCCCTAA
*
37770278 CTTGTAAAATTACCAAAATACCCCTAA
1 TTTGTAAAATTACCAAAATACCCCTAA
* * * * *
37770305 TTTGTGAAATTATCGAAATA-CTCTCGA
1 TTTGTAAAATTACCAAAATACCCCT-AA
* *
37770332 TTTGTAAAA-TATCGAAATACCCCT
1 TTTGTAAAATTACCAAAATACCCCT
37770356 GTAGGGTAGA
Statistics
Matches: 88, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
26 13 0.15
27 75 0.85
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.33
Consensus pattern (27 bp):
TTTGTAAAATTACCAAAATACCCCTAA
Found at i:37770379 original size:27 final size:27
Alignment explanation
Indices: 37770345--37770747 Score: 567
Period size: 27 Copynumber: 15.0 Consensus size: 27
37770335 GTAAAATATC
37770345 GAAATACCCCTGTAGGGTAGAATTA-T
1 GAAATACCCCTGTAGGGTAGAATTACT
*
37770371 CAAAATA-CCCTGTAGGGTAGAATTACT
1 -GAAATACCCCTGTAGGGTAGAATTACT
* *
37770398 GAAATAACCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACT
* **
37770425 GAAATACCCCTATAATGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
37770452 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
* * * *
37770479 GAAATACCCTTTTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACT
37770506 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
* * *
37770533 GAAATAACCCTATAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACT
37770560 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
*
37770587 GAAATAACCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
* *
37770614 GAAATACCCCTATAAGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
37770641 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
* * * *
37770668 AAAATACCCTTGTAGGGTAGAAGTACC
1 GAAATACCCCTGTAGGGTAGAATTACT
37770695 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
* * * *
37770722 GAGATACCCTTGTGGGGTAAAATTAC
1 GAAATACCCCTGTAGGGTAGAATTAC
37770748 CATTTTGCCC
Statistics
Matches: 331, Mismatches: 43, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
26 23 0.07
27 308 0.93
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.26
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACT
Found at i:37770987 original size:25 final size:25
Alignment explanation
Indices: 37770953--37771047 Score: 154
Period size: 25 Copynumber: 3.8 Consensus size: 25
37770943 AGGAAGTGCT
37770953 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
37770978 AAAAGGGCTTTACCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* *
37771003 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
37771028 AAAACGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
37771048 ATTAAAAGAG
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 65 1.00
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:37771060 original size:24 final size:24
Alignment explanation
Indices: 37770953--37771083 Score: 120
Period size: 25 Copynumber: 5.2 Consensus size: 24
37770943 AGGAAGTGCT
*
37770953 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTA-TG
* *
37770978 AAAAGGGCTTTACCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTA-TG
*
37771003 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTAT-G
* *
37771028 AAAACGGCTTTGCCCCAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATG
**
37771051 AAAAGAGGCTAGGCCTCCAGTTATATG
1 AAAAG-GGCTTTGCC-CCAGTT-TATG
37771078 ATAAAG
1 A-AAAG
37771084 CAGCTATGCT
Statistics
Matches: 90, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
23 4 0.04
24 11 0.12
25 66 0.73
26 1 0.01
27 4 0.04
28 4 0.04
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.25
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATG
Found at i:37773426 original size:20 final size:20
Alignment explanation
Indices: 37773388--37773432 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
37773378 AAGGGCTAAA
* *
37773388 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
* *
37773408 ATGAAAAATTCTAATATTTT
1 ATGAAAAATTCTAAAATTTG
37773428 ATGAA
1 ATGAA
37773433 TACATGTGCT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.47, C:0.02, G:0.13, T:0.38
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:37776496 original size:92 final size:92
Alignment explanation
Indices: 37776339--37776506 Score: 257
Period size: 92 Copynumber: 1.8 Consensus size: 92
37776329 GGATGGTTGA
* **
37776339 GCATCCGAACTCGTTGAGTTGAGTCTGAGTCACTTATGGATGCAAATGTCCAAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTCACTTATGGATGCAAATCCCCAAACTCGTTGAGTT
37776404 GAGTCCGAGTTTGTGAGATGTAACTAG
66 GAGTCCGAGTTTGTGAGATGTAACTAG
* * * *
37776431 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAA-CCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAG-TCACTTATGGATGCAAATCCCCAAACTCGTTGAGT
37776495 TGAGTCCGAGTT
65 TGAGTCCGAGTT
37776507 CACTTAGGGG
Statistics
Matches: 68, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
92 53 0.78
93 15 0.22
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.30
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTCACTTATGGATGCAAATCCCCAAACTCGTTGAGTT
GAGTCCGAGTTTGTGAGATGTAACTAG
Found at i:37776774 original size:19 final size:20
Alignment explanation
Indices: 37776737--37776774 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
37776727 ATAAGGTGGT
37776737 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
37776757 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
37776775 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:37784137 original size:81 final size:82
Alignment explanation
Indices: 37783980--37784220 Score: 299
Period size: 81 Copynumber: 3.0 Consensus size: 82
37783970 AAAAAATGGC
* * * *
37783980 CGAAATACCCTCATAGGGTAAAATGACCGAAATTCCC-CATAGGGTAAAATGACCTAAATACCCC
1 CGAAATACCCTCATAGGGTAAAATGACTGAAATACCCTTATAGGGTAAAATGACCGAAATACCCC
37784044 TATAAGGTAAAATGAAT
66 TATAAGGTAAAATGAAT
* ** * * *
37784061 -GTAATACCCTTGTAGGGTAAAATGACTGTAATACCCTTGTAGGGTAAAATCACCGAAATACCCC
1 CGAAATACCCTCATAGGGTAAAATGACTGAAATACCCTTATAGGGTAAAATGACCGAAATACCCC
* *
37784125 CATAGGGTAAAAT-AAT
66 TATAAGGTAAAATGAAT
* * * * *
37784141 CGAAATACCCCCATAGGGTAAAATGACTGAAATACCCTTATAAGCTAAAATGACTGTAATACCCC
1 CGAAATACCCTCATAGGGTAAAATGACTGAAATACCCTTATAGGGTAAAATGACCGAAATACCCC
*
37784206 TGTAAGGTAAAATGA
66 TATAAGGTAAAATGA
37784221 CTTATTTGCC
Statistics
Matches: 131, Mismatches: 26, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
80 33 0.25
81 97 0.74
82 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.17, T:0.23
Consensus pattern (82 bp):
CGAAATACCCTCATAGGGTAAAATGACTGAAATACCCTTATAGGGTAAAATGACCGAAATACCCC
TATAAGGTAAAATGAAT
Found at i:37784222 original size:27 final size:27
Alignment explanation
Indices: 37783972--37784222 Score: 240
Period size: 27 Copynumber: 9.3 Consensus size: 27
37783962 TGGGCCGAAA
* *
37783972 AAAATGGCCGAAATA-CCCTCATAGGGT
1 AAAATGACTGAAATACCCCT-ATAGGGT
* *
37783999 AAAATGACCGAAATTCCCC-ATAGGGT
1 AAAATGACTGAAATACCCCTATAGGGT
*
37784025 AAAATGACCT-AAATACCCCTATAAGGT
1 AAAATGA-CTGAAATACCCCTATAGGGT
* * * *
37784052 AAAATGAATGTAATACCCTTGTAGGGT
1 AAAATGACTGAAATACCCCTATAGGGT
* * *
37784079 AAAATGACTGTAATACCCTTGTAGGGT
1 AAAATGACTGAAATACCCCTATAGGGT
* * *
37784106 AAAATCACCGAAATACCCCCATAGGGT
1 AAAATGACTGAAATACCCCTATAGGGT
* *
37784133 AAAAT-AATCGAAATACCCCCATAGGGT
1 AAAATGACT-GAAATACCCCTATAGGGT
* * *
37784160 AAAATGACTGAAATACCCTTATAAGCT
1 AAAATGACTGAAATACCCCTATAGGGT
* * *
37784187 AAAATGACTGTAATACCCCTGTAAGGT
1 AAAATGACTGAAATACCCCTATAGGGT
37784214 AAAATGACT
1 AAAATGACT
37784223 TATTTGCCTA
Statistics
Matches: 190, Mismatches: 28, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
26 24 0.13
27 161 0.85
28 5 0.03
ACGTcount: A:0.40, C:0.20, G:0.17, T:0.23
Consensus pattern (27 bp):
AAAATGACTGAAATACCCCTATAGGGT
Found at i:37788978 original size:48 final size:48
Alignment explanation
Indices: 37788926--37789018 Score: 123
Period size: 48 Copynumber: 1.9 Consensus size: 48
37788916 AAATAGCCGA
* * *
37788926 AGCTATATCAATCTCGCACACTAAGTGCCAATATGTATATATAGCTGG
1 AGCTATATCAATCACACACACTAAGTGCCAATATATATATATAGCTGG
* * * *
37788974 AGCTATCTCAATCACATACACTAAGTGCTAATATATGTATATAGC
1 AGCTATATCAATCACACACACTAAGTGCCAATATATATATATAGC
37789019 CAAAGTTATC
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 38 1.00
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.30
Consensus pattern (48 bp):
AGCTATATCAATCACACACACTAAGTGCCAATATATATATATAGCTGG
Found at i:37793087 original size:20 final size:20
Alignment explanation
Indices: 37793059--37793097 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
37793049 CTAGGAACTA
37793059 TGTGATCTGAGCTCATGATT
1 TGTGATCTGAGCTCATGATT
* *
37793079 TGTGGTCTGAGTTCATGAT
1 TGTGATCTGAGCTCATGAT
37793098 ATATGTTACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.13, G:0.28, T:0.41
Consensus pattern (20 bp):
TGTGATCTGAGCTCATGATT
Found at i:37795296 original size:47 final size:47
Alignment explanation
Indices: 37795227--37795326 Score: 191
Period size: 47 Copynumber: 2.1 Consensus size: 47
37795217 AATAGTTAAG
*
37795227 ATTGGCTTATCGGTATGCTAAGAAAACTAAGTAAAATTATGCATGTT
1 ATTGGTTTATCGGTATGCTAAGAAAACTAAGTAAAATTATGCATGTT
37795274 ATTGGTTTATCGGTATGCTAAGAAAACTAAGTAAAATTATGCATGTT
1 ATTGGTTTATCGGTATGCTAAGAAAACTAAGTAAAATTATGCATGTT
37795321 ATTGGT
1 ATTGGT
37795327 AGTCATATTG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 52 1.00
ACGTcount: A:0.35, C:0.09, G:0.20, T:0.36
Consensus pattern (47 bp):
ATTGGTTTATCGGTATGCTAAGAAAACTAAGTAAAATTATGCATGTT
Found at i:37797172 original size:16 final size:16
Alignment explanation
Indices: 37797151--37797189 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
37797141 AAAATTAAAG
* *
37797151 AAATATATATTTTTTA
1 AAATATATATCTTTAA
*
37797167 AAATATTTATCTTTAA
1 AAATATATATCTTTAA
37797183 AAATATA
1 AAATATA
37797190 AGTCCATCTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (16 bp):
AAATATATATCTTTAA
Found at i:37800251 original size:18 final size:18
Alignment explanation
Indices: 37800220--37800265 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
37800210 CTTCCAAACA
* *
37800220 TATTTATAATTTTTATTT
1 TATTTTTAAGTTTTATTT
*
37800238 TATTTTTAAGTTTTTTTT
1 TATTTTTAAGTTTTATTT
37800256 TAATTTTTAA
1 T-ATTTTTAA
37800266 TTAATAAACA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
18 16 0.67
19 8 0.33
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (18 bp):
TATTTTTAAGTTTTATTT
Found at i:37800261 original size:19 final size:19
Alignment explanation
Indices: 37800220--37800265 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
37800210 CTTCCAAACA
*
37800220 TATTTATAA-TTTTTATTT
1 TATTTTTAAGTTTTTATTT
37800238 TATTTTTAAGTTTTT-TTT
1 TATTTTTAAGTTTTTATTT
37800256 TAATTTTTAA
1 T-ATTTTTAA
37800266 TTAATAAACA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
18 12 0.48
19 13 0.52
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (19 bp):
TATTTTTAAGTTTTTATTT
Found at i:37802124 original size:27 final size:27
Alignment explanation
Indices: 37802094--37802270 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
37802084 ATATTGAGTC
* * * *
37802094 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
37802121 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
37802148 CGCACACTTAGTGCTACATAGT-AAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
37802175 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
37802202 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
37802229 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
37802256 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37802271 GTACAATTTA
Statistics
Matches: 128, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
26 3 0.02
27 122 0.95
28 3 0.02
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:37802232 original size:81 final size:81
Alignment explanation
Indices: 37802115--37802269 Score: 224
Period size: 81 Copynumber: 1.9 Consensus size: 81
37802105 TGCTATATAA
* *
37802115 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGT-AAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
37802179 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
37802196 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
37802260 CACTTAGTGC
65 CACTTAGTGC
37802270 TGTACAATTT
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
80 1 0.02
81 62 0.94
82 3 0.05
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:37810304 original size:27 final size:27
Alignment explanation
Indices: 37810274--37810451 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
37810264 ATATTGAGTC
* * * *
37810274 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
37810301 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
37810328 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
37810356 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
37810383 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
37810410 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
37810437 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37810452 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:37810413 original size:82 final size:81
Alignment explanation
Indices: 37810295--37810450 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
37810285 TGCTATATAA
* *
37810295 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
37810360 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
37810377 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
37810441 CACTTAGTGC
65 CACTTAGTGC
37810451 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:37817354 original size:93 final size:93
Alignment explanation
Indices: 37817246--37817416 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
37817236 GCCCCTAAGT
* * *
37817246 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37817311 CAAGTTCGGATGCCTAGTTACATTTCAC
66 CAAGTTCGGATGCCTAGTTACATTTCAC
*
37817339 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
37817404 CGAGTTCGGATGC
66 CAAGTTCGGATGC
37817417 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CAAGTTCGGATGCCTAGTTACATTTCAC
Found at i:37817413 original size:46 final size:46
Alignment explanation
Indices: 37817241--37817413 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
37817231 AACCCGCCCC
* * * *
37817241 TAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* * *
37817287 TAAGTGAACTCGGACTCAACTCAACAAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
37817335 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
37817380 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
37817414 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 59 0.57
47 28 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:37817871 original size:30 final size:30
Alignment explanation
Indices: 37817837--37817895 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
37817827 TTTAATACGA
37817837 ACTTTGGAAAAATTACACTTTTGCCCCTAC
1 ACTTTGGAAAAATTACACTTTTGCCCCTAC
* * **
37817867 ACTTTTGCATTATTACACTTTTGCCCCTA
1 ACTTTGGAAAAATTACACTTTTGCCCCTA
37817896 GGCTCGGGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.08, T:0.39
Consensus pattern (30 bp):
ACTTTGGAAAAATTACACTTTTGCCCCTAC
Found at i:37819454 original size:17 final size:17
Alignment explanation
Indices: 37819400--37819454 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 17
37819390 GATAATGAAG
*
37819400 ATTACATACCAAAGAAT
1 ATTACAAACCAAAGAAT
*
37819417 ATATA-AAACAAAAGGAAT
1 AT-TACAAACCAAA-GAAT
*
37819435 ATTACAAACCAAATAAT
1 ATTACAAACCAAAGAAT
37819452 ATT
1 ATT
37819455 GGTGGCGATT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
17 16 0.52
18 15 0.48
ACGTcount: A:0.58, C:0.13, G:0.05, T:0.24
Consensus pattern (17 bp):
ATTACAAACCAAAGAAT
Found at i:37821815 original size:30 final size:31
Alignment explanation
Indices: 37821764--37821843 Score: 103
Period size: 30 Copynumber: 2.6 Consensus size: 31
37821754 CCCTAAAATC
37821764 ATAA-AAAAACCTAAACAACCTAAAACCATA
1 ATAATAAAAACCTAAACAACCTAAAACCATA
* *
37821794 ATAATAAAATCCTAAA-AACCTAAAACCCTA
1 ATAATAAAAACCTAAACAACCTAAAACCATA
*
37821824 ATTAAT-AAACCCTAAACAAC
1 A-TAATAAAAACCTAAACAAC
37821844 AAAAAAGGGG
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
30 27 0.61
31 17 0.39
ACGTcount: A:0.59, C:0.24, G:0.00, T:0.17
Consensus pattern (31 bp):
ATAATAAAAACCTAAACAACCTAAAACCATA
Found at i:37821823 original size:16 final size:16
Alignment explanation
Indices: 37821768--37821824 Score: 55
Period size: 16 Copynumber: 3.6 Consensus size: 16
37821758 AAAATCATAA
*
37821768 AAAAACCTAAACAACCT
1 AAAACCCTAAA-AACCT
* *
37821785 AAAACCATAATAA--T
1 AAAACCCTAAAAACCT
*
37821799 AAAATCCTAAAAACCT
1 AAAACCCTAAAAACCT
37821815 AAAACCCTAA
1 AAAACCCTAA
37821825 TTAATAAACC
Statistics
Matches: 31, Mismatches: 7, Indels: 5
0.72 0.16 0.12
Matches are distributed among these distances:
14 11 0.35
16 12 0.39
17 8 0.26
ACGTcount: A:0.60, C:0.25, G:0.00, T:0.16
Consensus pattern (16 bp):
AAAACCCTAAAAACCT
Found at i:37823830 original size:29 final size:27
Alignment explanation
Indices: 37823812--37823881 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
37823802 ATATTAAGTC
37823812 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
37823839 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
37823867 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
37823882 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:37823875 original size:28 final size:28
Alignment explanation
Indices: 37823812--37823909 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
37823802 ATATTAAGTC
*
37823812 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
37823839 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
37823867 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
37823896 CGCACACTTAGTGC
1 CGCACACTTAGTGC
37823910 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:37831915 original size:29 final size:27
Alignment explanation
Indices: 37831897--37831966 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
37831887 ATATTAAGTC
37831897 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
37831924 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
37831952 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
37831967 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:37831960 original size:28 final size:28
Alignment explanation
Indices: 37831897--37831994 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
37831887 ATATTAAGTC
*
37831897 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
37831924 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
37831952 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
37831981 CGCACACTTAGTGC
1 CGCACACTTAGTGC
37831995 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:37836597 original size:18 final size:19
Alignment explanation
Indices: 37836571--37836606 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
37836561 AAAATAACCT
*
37836571 AAATGAAAA-CTAAGAATG
1 AAATAAAAACCTAAGAATG
37836589 AAATAAAAACCTAAGAAT
1 AAATAAAAACCTAAGAAT
37836607 CAAACCTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.64, C:0.08, G:0.11, T:0.17
Consensus pattern (19 bp):
AAATAAAAACCTAAGAATG
Found at i:37838268 original size:25 final size:25
Alignment explanation
Indices: 37838240--37838290 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
37838230 CATTAGAAGG
37838240 TATATTAAATGGATATTGTTCACAA
1 TATATTAAATGGATATTGTTCACAA
37838265 TATATTAAATGGATATTGTTCACAA
1 TATATTAAATGGATATTGTTCACAA
37838290 T
1 T
37838291 GTCATAACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.39, C:0.08, G:0.12, T:0.41
Consensus pattern (25 bp):
TATATTAAATGGATATTGTTCACAA
Found at i:37844950 original size:13 final size:13
Alignment explanation
Indices: 37844932--37844956 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37844922 TACAATAAGG
37844932 GGCACACGACCAA
1 GGCACACGACCAA
37844945 GGCACACGACCA
1 GGCACACGACCA
37844957 TGGCCAGAGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.40, G:0.24, T:0.00
Consensus pattern (13 bp):
GGCACACGACCAA
Found at i:37845925 original size:44 final size:44
Alignment explanation
Indices: 37845862--37845982 Score: 188
Period size: 44 Copynumber: 2.8 Consensus size: 44
37845852 AGGTTAAGAT
* *
37845862 GCTGACGTCATGTCCCAGACAAGTCTTACACTGACACACTACAA
1 GCTGACGCCATGTCCCAGACAAGTCTTACACTAACACACTACAA
* * *
37845906 GCTGACGCCATGTCCCAGACATGCCTTACACTAACACACTGCAA
1 GCTGACGCCATGTCCCAGACAAGTCTTACACTAACACACTACAA
*
37845950 GCTGACGCCATGTCCCAGAGAAGTCTTACACTA
1 GCTGACGCCATGTCCCAGACAAGTCTTACACTA
37845983 GCTTGTGTAT
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 69 1.00
ACGTcount: A:0.30, C:0.33, G:0.17, T:0.20
Consensus pattern (44 bp):
GCTGACGCCATGTCCCAGACAAGTCTTACACTAACACACTACAA
Found at i:37846115 original size:46 final size:48
Alignment explanation
Indices: 37845958--37846123 Score: 187
Period size: 48 Copynumber: 3.5 Consensus size: 48
37845948 AAGCTGACGC
* * * * **
37845958 CATGTCCCAGAGAAGTCTTACACTAGCTT-GTGTATCGCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTTAAT-TATCTTGAGGCCGATG
*
37846006 CATGTCCCAGACATGTCTTACACTGGCTTAATTATCTTGAGGCCAATG
1 CATGTCCCAGACATGTCTTACACTGGCTTAATTATCTTGAGGCCGATG
* * * *
37846054 CATGTCCCAAACATGTCTTACACTGGCTCTCA-TA-C-TGTGGCTGATG
1 CATGTCCCAGACATGTCTTACACTGGCT-TAATTATCTTGAGGCCGATG
37846100 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
37846124 AGCACACCTA
Statistics
Matches: 103, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
46 31 0.30
47 1 0.01
48 68 0.66
49 3 0.03
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.29
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTGGCTTAATTATCTTGAGGCCGATG
Found at i:37848500 original size:27 final size:26
Alignment explanation
Indices: 37848452--37848503 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
37848442 GTGAGGCTGC
*
37848452 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
37848478 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
37848504 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:37849133 original size:26 final size:27
Alignment explanation
Indices: 37849104--37849157 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
37849094 TCACACAAGT
*
37849104 TAGTCATTT-ACGCACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
37849130 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
37849157 T
1 T
37849158 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:37849188 original size:27 final size:27
Alignment explanation
Indices: 37849158--37849357 Score: 249
Period size: 27 Copynumber: 7.4 Consensus size: 27
37849148 GGGGCAAAAT
* * *
37849158 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
37849185 GGTAATTCTACCCTAC-AGAGGTATTTC
1 GGTAATTCTACCCTACAAG-GGTATTTC
* * *
37849212 GATAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
37849239 GGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** *
37849266 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
37849293 GGGAATTCTACCTTACAATGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
37849320 GGTAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
37849347 GGTAATTCTAC
1 GGTAATTCTAC
37849358 AACTTATCCA
Statistics
Matches: 151, Mismatches: 20, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
26 2 0.01
27 148 0.98
28 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:37849282 original size:81 final size:81
Alignment explanation
Indices: 37849158--37849357 Score: 276
Period size: 81 Copynumber: 2.5 Consensus size: 81
37849148 GGGGCAAAAT
* * *
37849158 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGAGGTATTTCGATAATTCTAT
1 GGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGAGGTATTTCGAGAATTCTA-
*
37849223 CC-TACAGGGGTATTTC
65 CCTTACAAGGGTATTTC
* ** * *
37849239 GGTAATTTTACCCTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCGGGAATTCTAC
1 GGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGAGGTATTTCGAGAATTCTAC
*
37849304 CTTACAATGGTATTTC
66 CTTACAAGGGTATTTC
* *
37849320 GGTAATTCTACCTTACAAGGGTATTTCGGTAATTCTAC
1 GGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTAC
37849358 AACTTATCCA
Statistics
Matches: 103, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
80 2 0.02
81 101 0.98
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.35
Consensus pattern (81 bp):
GGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGAGGTATTTCGAGAATTCTAC
CTTACAAGGGTATTTC
Found at i:37852141 original size:24 final size:24
Alignment explanation
Indices: 37852107--37852182 Score: 134
Period size: 24 Copynumber: 3.2 Consensus size: 24
37852097 AAAATTCGCT
37852107 CTTACTGAACTTGGCATATAACTG
1 CTTACTGAACTTGGCATATAACTG
* *
37852131 CTTACTAAACTTGACATATAACTG
1 CTTACTGAACTTGGCATATAACTG
37852155 CTTACTGAACTTGGCATATAACTG
1 CTTACTGAACTTGGCATATAACTG
37852179 CTTA
1 CTTA
37852183 TCTCTCAAGG
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.34
Consensus pattern (24 bp):
CTTACTGAACTTGGCATATAACTG
Found at i:37855421 original size:60 final size:59
Alignment explanation
Indices: 37855347--37855464 Score: 182
Period size: 60 Copynumber: 2.0 Consensus size: 59
37855337 TTTGACTTGC
* * * *
37855347 AATTTTTACGTGCAGGGGACACATGGCCGAGCAACACACCCATGGGGCTGGCTGTGTGTA
1 AATTTTTACGTGCAGGGGACACACGACCGAACAACACACCCAT-GGGCTGGCCGTGTGTA
*
37855407 AATTTTTATGTGCAGGGGACACACGACCGAACAACACACCCATGGGCTGGCCGTGTGT
1 AATTTTTACGTGCAGGGGACACACGACCGAACAACACACCCATGGGCTGGCCGTGTGT
37855465 CACACACGGC
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
59 14 0.26
60 39 0.74
ACGTcount: A:0.25, C:0.25, G:0.30, T:0.21
Consensus pattern (59 bp):
AATTTTTACGTGCAGGGGACACACGACCGAACAACACACCCATGGGCTGGCCGTGTGTA
Found at i:37856377 original size:48 final size:49
Alignment explanation
Indices: 37856250--37856426 Score: 179
Period size: 46 Copynumber: 3.7 Consensus size: 49
37856240 GTTAAGATGT
*
37856250 CGATGCCATATCCCAGACATGGTCTTACACTAGCTTTCACATAGCGAGGC
1 CGATGCCATGTCCCAGACAT-GTCTTACACTAGCTTTCACATAGCGAGGC
* *
37856300 CGATGCCATGTCCCAGACA-GATCTTACACTAGCTTGT-ATATCGCGAGGC
1 CGATGCCATGTCCCAGACATG-TCTTACACTAGCTT-TCACATAGCGAGGC
* * * *
37856349 CGATG-CATGTCCTAGACATGTCTTACACTGGC--TCTCATA-CTGTGGC
1 CGATGCCATGTCCCAGACATGTCTTACACTAGCTTTCACATAGC-GAGGC
* * *
37856395 TGAT-ACATGTCCCAGACATGTTTTACACTAGC
1 CGATGCCATGTCCCAGACATGTCTTACACTAGC
37856427 ACACCTATTA
Statistics
Matches: 108, Mismatches: 13, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
45 2 0.02
46 33 0.31
48 24 0.22
49 30 0.28
50 19 0.18
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.27
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACATGTCTTACACTAGCTTTCACATAGCGAGGC
Found at i:37859427 original size:18 final size:18
Alignment explanation
Indices: 37859404--37859463 Score: 72
Period size: 18 Copynumber: 3.4 Consensus size: 18
37859394 CATATATTAT
37859404 ATATTTATATATAATAAA
1 ATATTTATATATAATAAA
*
37859422 ATATTTAT-TA-AA-GAA
1 ATATTTATATATAATAAA
*
37859437 TTAATTTATATATAATAAA
1 AT-ATTTATATATAATAAA
37859456 ATATTTAT
1 ATATTTAT
37859464 TAAAGAATTA
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
15 3 0.09
16 8 0.24
17 4 0.12
18 16 0.47
19 3 0.09
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (18 bp):
ATATTTATATATAATAAA
Found at i:37859449 original size:34 final size:34
Alignment explanation
Indices: 37859406--37859474 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
37859396 TATATTATAT
37859406 ATTTATATATAATAAAATATTTATTAAAGAATTA
1 ATTTATATATAATAAAATATTTATTAAAGAATTA
37859440 ATTTATATATAATAAAATATTTATTAAAGAATTA
1 ATTTATATATAATAAAATATTTATTAAAGAATTA
37859474 A
1 A
37859475 GCCATGTGTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (34 bp):
ATTTATATATAATAAAATATTTATTAAAGAATTA
Found at i:37867035 original size:20 final size:21
Alignment explanation
Indices: 37866999--37867037 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
37866989 TACTTAATCG
37866999 AAAACTCATAAAGATTTTCAA
1 AAAACTCATAAAGATTTTCAA
37867020 AAAACTTCA-AAA-ATTTTC
1 AAAAC-TCATAAAGATTTTC
37867038 CAAGGTTGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 6 0.35
21 8 0.47
22 3 0.18
ACGTcount: A:0.51, C:0.15, G:0.03, T:0.31
Consensus pattern (21 bp):
AAAACTCATAAAGATTTTCAA
Found at i:37869961 original size:48 final size:48
Alignment explanation
Indices: 37869905--37870115 Score: 198
Period size: 46 Copynumber: 4.5 Consensus size: 48
37869895 TGACGCCATA
* * * *
37869905 TCCCAGACAGGTTTTACACTAGCTTGTATATCGCGAGGCCGATGCATG
1 TCCCAGACATGTCTTACACTAGCTTATATATCTCGAGGCCGATGCATG
* * * * *
37869953 TCCCAGACATGTCATACACTAGC-TCT-TGTCTCAATGCCGATGCATG
1 TCCCAGACATGTCTTACACTAGCTTATATATCTCGAGGCCGATGCATG
* * *
37869999 TCCTAGACATGTCTTACACTAGCGTAAATATCTCGAGGCCGATGCATG
1 TCCCAGACATGTCTTACACTAGCTTATATATCTCGAGGCCGATGCATG
* * * * * * *
37870047 TTCCAGACATGTCTTACACAAGCTGT-CAT-GCT-GTGGCTGGTGCATG
1 TCCCAGACATGTCTTACACTAGCT-TATATATCTCGAGGCCGATGCATG
*
37870093 TCCCAAACATGTCTTACACTAGC
1 TCCCAGACATGTCTTACACTAGC
37870116 ACACATATCA
Statistics
Matches: 133, Mismatches: 27, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
46 68 0.51
47 5 0.04
48 59 0.44
49 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (48 bp):
TCCCAGACATGTCTTACACTAGCTTATATATCTCGAGGCCGATGCATG
Found at i:37870007 original size:46 final size:46
Alignment explanation
Indices: 37869907--37870070 Score: 159
Period size: 48 Copynumber: 3.5 Consensus size: 46
37869897 ACGCCATATC
* * ** * *
37869907 CCAGACAGGTTTTACACTAGCTTGTATATCGCGAGGCCGATGCATGT
1 CCAGACATGTCTTACACTAGC-TAAATATCTCAAGGCCGATGCATGT
* ** * *
37869954 CCCAGACATGTCATACACTAGCT-CTTGTCTCAATGCCGATGCATGT
1 -CCAGACATGTCTTACACTAGCTAAATATCTCAAGGCCGATGCATGT
*
37870000 CCTAGACATGTCTTACACTAGCGTAAATATCTCGAGGCCGATGCATGTT
1 CC-AGACATGTCTTACACTAGC-TAAATATCTCAAGGCCGATGCATG-T
*
37870049 CCAGACATGTCTTACACAAGCT
1 CCAGACATGTCTTACACTAGCT
37870071 GTCATGCTGT
Statistics
Matches: 96, Mismatches: 16, Indels: 9
0.79 0.13 0.07
Matches are distributed among these distances:
45 2 0.02
46 35 0.36
47 3 0.03
48 53 0.55
49 3 0.03
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (46 bp):
CCAGACATGTCTTACACTAGCTAAATATCTCAAGGCCGATGCATGT
Found at i:37870091 original size:94 final size:93
Alignment explanation
Indices: 37869905--37870115 Score: 237
Period size: 94 Copynumber: 2.2 Consensus size: 93
37869895 TGACGCCATA
* * * **
37869905 TCCCAGACAGGTTTTACACTAGCTTGTATATCGCGAGGCCGATGCATGTCCCAGACATGTCATAC
1 TCCCAGACATGTCTTACACTAGCGTAAATATCGCGAGGCCGATGCATGTCCCAGACATGTCATAC
*
37869970 ACTAGCTCTTGTCTCAATGCCGATGCATG
66 ACAAGC-CTTGTCTCAATGCCGATGCATG
* * * *
37869999 TCCTAGACATGTCTTACACTAGCGTAAATATCTCGAGGCCGATGCATGTTCCAGACATGTCTTAC
1 TCCCAGACATGTCTTACACTAGCGTAAATATCGCGAGGCCGATGCATGTCCCAGACATGTCATAC
** * *
37870064 ACAAG-C-TGTCATGCTGTGGCTGGTGCATG
66 ACAAGCCTTGTC-T-CAAT-GCCGATGCATG
*
37870093 TCCCAAACATGTCTTACACTAGC
1 TCCCAGACATGTCTTACACTAGC
37870116 ACACATATCA
Statistics
Matches: 98, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
91 4 0.04
92 2 0.02
93 2 0.02
94 90 0.92
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (93 bp):
TCCCAGACATGTCTTACACTAGCGTAAATATCGCGAGGCCGATGCATGTCCCAGACATGTCATAC
ACAAGCCTTGTCTCAATGCCGATGCATG
Found at i:37873034 original size:27 final size:26
Alignment explanation
Indices: 37872994--37873067 Score: 73
Period size: 25 Copynumber: 2.8 Consensus size: 26
37872984 ATTTAATTAC
*
37872994 CAATAATAATAATTTTATAAAT-ATA
1 CAATAATAAAAATTTTATAAATAATA
37873019 TCTAATAATAAAAA-TTTA-AAATAATA
1 -C-AATAATAAAAATTTTATAAATAATA
*
37873045 CAGTAAATAAAAATTTTCATAAA
1 CAAT-AATAAAAATTTT-ATAAA
37873068 AATTTTTCAA
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
24 2 0.05
25 13 0.32
26 11 0.28
27 11 0.28
28 3 0.08
ACGTcount: A:0.58, C:0.05, G:0.01, T:0.35
Consensus pattern (26 bp):
CAATAATAAAAATTTTATAAATAATA
Found at i:37877341 original size:23 final size:26
Alignment explanation
Indices: 37877291--37877345 Score: 71
Period size: 27 Copynumber: 2.2 Consensus size: 26
37877281 CATAGAAATC
*
37877291 TCAATTCAGTCATAATTTCTCACATTT
1 TCAATTCAATCAT-ATTTCTCACATTT
37877318 TCAATTCAATCAT-TTTC-CAC-TTT
1 TCAATTCAATCATATTTCTCACATTT
37877341 TCAAT
1 TCAAT
37877346 CAAATTTTCA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
23 8 0.30
24 3 0.11
25 4 0.15
27 12 0.44
ACGTcount: A:0.29, C:0.24, G:0.02, T:0.45
Consensus pattern (26 bp):
TCAATTCAATCATATTTCTCACATTT
Found at i:37877836 original size:17 final size:18
Alignment explanation
Indices: 37877802--37877837 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
37877792 TGAATTTCTA
37877802 TCCAATTTATACCCTAAT
1 TCCAATTTATACCCTAAT
*
37877820 TCCAATTTA-ATCCTAAT
1 TCCAATTTATACCCTAAT
37877837 T
1 T
37877838 AACTCATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.33, C:0.25, G:0.00, T:0.42
Consensus pattern (18 bp):
TCCAATTTATACCCTAAT
Found at i:37879053 original size:16 final size:15
Alignment explanation
Indices: 37879028--37879064 Score: 56
Period size: 16 Copynumber: 2.4 Consensus size: 15
37879018 TATAATTTAA
37879028 AATAAAATAATAATT
1 AATAAAATAATAATT
*
37879043 ATATAATATAATAATT
1 A-ATAAAATAATAATT
37879059 AATAAA
1 AATAAA
37879065 TTAAGAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
AATAAAATAATAATT
Found at i:37879592 original size:21 final size:21
Alignment explanation
Indices: 37879568--37879637 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
37879558 TGATTTGAAC
37879568 TCATTGAATTGTGGTCTGAGT
1 TCATTGAATTGTGGTCTGAGT
* * **
37879589 TCA-TGATATATGTGACATATGAAC
1 TCATTGA-AT-TGTG--GTCTGAGT
*
37879613 TCATTGAGTTGTGGTCTGAGT
1 TCATTGAATTGTGGTCTGAGT
37879634 TCAT
1 TCAT
37879638 GATGTATGTG
Statistics
Matches: 35, Mismatches: 9, Indels: 10
0.65 0.17 0.19
Matches are distributed among these distances:
20 3 0.09
21 13 0.37
22 4 0.11
23 4 0.11
24 8 0.23
25 3 0.09
ACGTcount: A:0.24, C:0.11, G:0.24, T:0.40
Consensus pattern (21 bp):
TCATTGAATTGTGGTCTGAGT
Found at i:37879616 original size:45 final size:45
Alignment explanation
Indices: 37879563--37879650 Score: 158
Period size: 45 Copynumber: 2.0 Consensus size: 45
37879553 CTATGTGATT
37879563 TGAACTCATTGAATTGTGGTCTGAGTTCATGATATATGTGACATA
1 TGAACTCATTGAATTGTGGTCTGAGTTCATGATATATGTGACATA
* *
37879608 TGAACTCATTGAGTTGTGGTCTGAGTTCATGATGTATGTGACA
1 TGAACTCATTGAATTGTGGTCTGAGTTCATGATATATGTGACA
37879651 CATGTTTTGA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.26, C:0.11, G:0.25, T:0.38
Consensus pattern (45 bp):
TGAACTCATTGAATTGTGGTCTGAGTTCATGATATATGTGACATA
Found at i:37883817 original size:31 final size:31
Alignment explanation
Indices: 37883779--37883842 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
37883769 ACCCATCCAG
37883779 TTTCTCAGATTCAACCCAGAGTAACTCAACA
1 TTTCTCAGATTCAACCCAGAGTAACTCAACA
**
37883810 TTTCTCAGATTCAACCTGGAGTAACTCAACA
1 TTTCTCAGATTCAACCCAGAGTAACTCAACA
37883841 TT
1 TT
37883843 CTGACACTTC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.33, C:0.27, G:0.11, T:0.30
Consensus pattern (31 bp):
TTTCTCAGATTCAACCCAGAGTAACTCAACA
Found at i:37888100 original size:12 final size:12
Alignment explanation
Indices: 37888083--37888107 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
37888073 ATGTAAGTGA
37888083 TCTTGATGATTT
1 TCTTGATGATTT
37888095 TCTTGATGATTT
1 TCTTGATGATTT
37888107 T
1 T
37888108 TACATTTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:37888444 original size:17 final size:17
Alignment explanation
Indices: 37888422--37888455 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
37888412 ATCAATTTTC
37888422 GGGCATAGGGGTAAAAT
1 GGGCATAGGGGTAAAAT
37888439 GGGCATAGGGGTAAAAT
1 GGGCATAGGGGTAAAAT
37888456 TCATAGTGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.06, G:0.41, T:0.18
Consensus pattern (17 bp):
GGGCATAGGGGTAAAAT
Found at i:37888867 original size:47 final size:45
Alignment explanation
Indices: 37888798--37889063 Score: 214
Period size: 47 Copynumber: 5.7 Consensus size: 45
37888788 TAATTTGTGT
* * * *
37888798 GCCAGTGTAACACATGTATGGGACATGCTTCGGCCACATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACA-GATGAGA
* * *
37888844 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTACAGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGG-CCACAGATGAGA
* * *
37888892 GCCAGAGTAAGACATGTTTGGGACATGCATCGGCCTCGACAGA-GATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGG-C-C-ACAGATGAGA
* * * * * *
37888939 GCCAGTGTAAGACGTGTCTGGGACACGCATCGACTA-AGA-GTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAGATG-AGA
* * * *
37888983 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCCGCATATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-G-GC-CACAGATGAGA
37889031 GCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
37889064 AGCAATTTAT
Statistics
Matches: 175, Mismatches: 32, Indels: 22
0.76 0.14 0.10
Matches are distributed among these distances:
43 4 0.02
44 29 0.17
45 1 0.01
46 20 0.11
47 58 0.33
48 40 0.23
49 18 0.10
50 5 0.03
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAGATGAGA
Found at i:37888957 original size:94 final size:93
Alignment explanation
Indices: 37888796--37889063 Score: 314
Period size: 94 Copynumber: 2.9 Consensus size: 93
37888786 GGTAATTTGT
* *
37888796 GTGCCAGTGTAACACATGTATGGGACATGCTTCGG-CC-ACATTATGAGAGCCAGTGTAAGACCA
1 GTGCCAGTGTAAGACATGTATGGGACATGCATCGGCCCGACA-TATGAGAGCCAGTGTAAGACCA
*
37888859 TGTCTGGGACATGGCATCG-GTACAGAGATGA
65 TGTCTGGGACATGGCATCGACTA-AGAG-T-A
* * * * *
37888890 GTGCCAGAGTAAGACATGTTTGGGACATGCATCGGCCTCGACAGA-GATAGCCAGTGTAAGA-CG
1 GTGCCAGTGTAAGACATGTATGGGACATGCATCGGCC-CGACATATGAGAGCCAGTGTAAGACCA
* *
37888953 TGTCTGGGACA-CGCATCGACTAAGAGTT
65 TGTCTGGGACATGGCATCGACTAAGAGTA
* * * *
37888981 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCCGCATATATGAGAGCCAGTGTAAGACCA
1 GTGCCAGTGTAAGACATGTATGGGACATGCATCGGCCCG-ACATATGAGAGCCAGTGTAAGACCA
37889046 TGTCTGGGACATGGCATC
65 TGTCTGGGACATGGCATC
37889064 AGCAATTTAT
Statistics
Matches: 147, Mismatches: 19, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
90 2 0.01
91 36 0.24
92 16 0.11
93 22 0.15
94 50 0.34
95 16 0.11
96 2 0.01
97 3 0.02
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (93 bp):
GTGCCAGTGTAAGACATGTATGGGACATGCATCGGCCCGACATATGAGAGCCAGTGTAAGACCAT
GTCTGGGACATGGCATCGACTAAGAGTA
Found at i:37893390 original size:43 final size:42
Alignment explanation
Indices: 37893321--37893487 Score: 201
Period size: 43 Copynumber: 3.9 Consensus size: 42
37893311 AGCTCGTACA
* * * *
37893321 ATGCC-ATATCCCAGATATGGCCTTACATGTTATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATAT-G
* * * * *
37893363 ATGCCACTGTCCTAGACAGGGTCTTACATGAAATCATAATATG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCA-CATATG
* *
37893406 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATATA
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCAC-ATATG
37893449 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAT
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAT
37893488 CTCGATAACC
Statistics
Matches: 105, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
42 7 0.07
43 94 0.90
44 4 0.04
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.28
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATATG
Found at i:37913281 original size:40 final size:40
Alignment explanation
Indices: 37913176--37913310 Score: 117
Period size: 40 Copynumber: 3.4 Consensus size: 40
37913166 TTTCATATAA
* * * * * *
37913176 CTATTTTCGTATAACTGATTCATATAATTATTATGCATCT
1 CTATTTCCATATAATTGACTCATATAATCATTATGCATAT
* * * * * *
37913216 CTATTTCCATACAACTGATTAATATAACCATTCTGCATAT
1 CTATTTCCATATAATTGACTCATATAATCATTATGCATAT
* * * *
37913256 CTATTTCCATATAATTTACTCATATAATCATTTTGTAAAT
1 CTATTTCCATATAATTGACTCATATAATCATTATGCATAT
*
37913296 CTAGTTCCATATAAT
1 CTATTTCCATATAAT
37913311 CGATTCATCT
Statistics
Matches: 77, Mismatches: 18, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
40 77 1.00
ACGTcount: A:0.33, C:0.18, G:0.05, T:0.44
Consensus pattern (40 bp):
CTATTTCCATATAATTGACTCATATAATCATTATGCATAT
Found at i:37913328 original size:40 final size:40
Alignment explanation
Indices: 37913237--37913328 Score: 103
Period size: 40 Copynumber: 2.3 Consensus size: 40
37913227 CAACTGATTA
* * * **
37913237 ATATAACCATTCTGCATATCTATTTCCATATAATTTACTC
1 ATATAACCATTTTGCAAATCTAGTTCCATATAATCGACTC
* * *
37913277 ATATAATCATTTTGTAAATCTAGTTCCATATAATCGATTC
1 ATATAACCATTTTGCAAATCTAGTTCCATATAATCGACTC
*
37913317 ATCTAACCATTT
1 ATATAACCATTT
37913329 CATATATCTA
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.34, C:0.20, G:0.04, T:0.42
Consensus pattern (40 bp):
ATATAACCATTTTGCAAATCTAGTTCCATATAATCGACTC
Found at i:37913338 original size:40 final size:40
Alignment explanation
Indices: 37913252--37913338 Score: 93
Period size: 40 Copynumber: 2.2 Consensus size: 40
37913242 ACCATTCTGC
* ** * **
37913252 ATATCTATTTCCATATAATTTACTCATATAATCATTTTGT
1 ATATCTAGTTCCATATAATCGACTCATATAACCATTTCAT
* * *
37913292 AAATCTAGTTCCATATAATCGATTCATCTAACCATTTCAT
1 ATATCTAGTTCCATATAATCGACTCATATAACCATTTCAT
37913332 ATATCTA
1 ATATCTA
37913339 TTTTTCACAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.34, C:0.18, G:0.03, T:0.44
Consensus pattern (40 bp):
ATATCTAGTTCCATATAATCGACTCATATAACCATTTCAT
Found at i:37914622 original size:17 final size:16
Alignment explanation
Indices: 37914586--37914642 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 16
37914576 GTTTTTTTAC
*
37914586 TATTTTAATATTAAAT
1 TATTTTAATAATAAAT
*
37914602 TATTTTAATAATATTAT
1 TATTTTAATAATA-AAT
* *
37914619 TATTATAAAACATAAAT
1 TATTTTAATA-ATAAAT
*
37914636 TAATTTA
1 TATTTTA
37914643 TCAATACAAG
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
16 12 0.38
17 17 0.53
18 3 0.09
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (16 bp):
TATTTTAATAATAAAT
Found at i:37916664 original size:46 final size:46
Alignment explanation
Indices: 37916614--37916721 Score: 128
Period size: 46 Copynumber: 2.3 Consensus size: 46
37916604 ATAAGTTCTA
* ** * *
37916614 AGCTCCTACGTATGTTGTGGGCTCGAGAATACAGGA-ATAGGTTTCG
1 AGCTCCTACATATGTTGCAGACGCGAGAATACA-GATATAGGTTTCG
* * *
37916660 AGCTCCCATATATGTTGCAGACGCGAGAATACAGATTTAGGTTTCG
1 AGCTCCTACATATGTTGCAGACGCGAGAATACAGATATAGGTTTCG
37916706 AGCTCCTACATATGTT
1 AGCTCCTACATATGTT
37916722 ACGAATTCGA
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
45 2 0.04
46 49 0.96
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (46 bp):
AGCTCCTACATATGTTGCAGACGCGAGAATACAGATATAGGTTTCG
Found at i:37916733 original size:46 final size:46
Alignment explanation
Indices: 37916635--37916738 Score: 122
Period size: 46 Copynumber: 2.3 Consensus size: 46
37916625 ATGTTGTGGG
* *
37916635 CTCGAGAATACAGGAATAGGTTTCGAGCTCCCATATATGTTGCAGA
1 CTCGAGAATACAGGAATAGGTTTCGAGCTCCCACATATGTTACAGA
* * *
37916681 CGCGAGAATACA-GATTTAGGTTTCGAGCTCCTACATATGTTAC-GAA
1 CTCGAGAATACAGGA-ATAGGTTTCGAGCTCCCACATATGTTACAG-A
*
37916727 TTCGAGAATACA
1 CTCGAGAATACA
37916739 AAAATATTAA
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
45 3 0.06
46 46 0.94
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (46 bp):
CTCGAGAATACAGGAATAGGTTTCGAGCTCCCACATATGTTACAGA
Found at i:37926656 original size:19 final size:20
Alignment explanation
Indices: 37926619--37926656 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
37926609 ATAAGGTGGT
37926619 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
37926639 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
37926657 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:37936385 original size:39 final size:39
Alignment explanation
Indices: 37936340--37936505 Score: 233
Period size: 39 Copynumber: 4.3 Consensus size: 39
37936330 GTCTTTAACT
** * * *
37936340 CGGATATTTTTCCAGCACGTAGCTTGCGGACCTTAAGTC
1 CGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGTC
* * * * *
37936379 CAGATATATTTCTAGCATATAGCCTACGGATCTCATGTC
1 CGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGTC
*
37936418 CGGATATTTTTCCAGCATATAGCCTGCGGATCTCATGTC
1 CGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGTC
37936457 CGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGTC
1 CGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGTC
37936496 CGGATATTTT
1 CGGATATTTT
37936506 CAATCTCATA
Statistics
Matches: 112, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 112 1.00
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.33
Consensus pattern (39 bp):
CGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGTC
Found at i:37942659 original size:27 final size:26
Alignment explanation
Indices: 37942615--37942666 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
37942605 CTCGCTGCAA
*
37942615 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
37942642 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
37942667 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:37948809 original size:39 final size:38
Alignment explanation
Indices: 37948750--37948843 Score: 152
Period size: 39 Copynumber: 2.4 Consensus size: 38
37948740 GCTTAAAGAC
* *
37948750 CCGCAGGCTATATGCTGAATTATACCCGGACTTAAGGT
1 CCGCAGGCTATGTGCTGAATTATAACCGGACTTAAGGT
37948788 CCGCAGGCTATGTGCTAGAATTATAACCGGACTTAAGGT
1 CCGCAGGCTATGTGCT-GAATTATAACCGGACTTAAGGT
*
37948827 CCGCAGGCTACGTGCTG
1 CCGCAGGCTATGTGCTG
37948844 GCAATATGTC
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
38 16 0.31
39 36 0.69
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (38 bp):
CCGCAGGCTATGTGCTGAATTATAACCGGACTTAAGGT
Found at i:37953700 original size:13 final size:13
Alignment explanation
Indices: 37953684--37953708 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37953674 TTTCTTCTTT
37953684 ATTTGGGATTTTA
1 ATTTGGGATTTTA
37953697 ATTTGGGATTTT
1 ATTTGGGATTTT
37953709 TGCTTATCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.00, G:0.24, T:0.56
Consensus pattern (13 bp):
ATTTGGGATTTTA
Found at i:37963846 original size:23 final size:23
Alignment explanation
Indices: 37963820--37963873 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
37963810 TTACCGCTAT
*
37963820 TAGCAGCTTTGCTACGTTACTAC
1 TAGCAGCTTTACTACGTTACTAC
* * *
37963843 TAGCAGCTTTATTGCGTTACTAT
1 TAGCAGCTTTACTACGTTACTAC
37963866 TAGCAGCT
1 TAGCAGCT
37963874 ACGCTACGAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (23 bp):
TAGCAGCTTTACTACGTTACTAC
Found at i:37970228 original size:23 final size:23
Alignment explanation
Indices: 37970175--37970230 Score: 85
Period size: 23 Copynumber: 2.4 Consensus size: 23
37970165 GCATTTACCG
* *
37970175 CTATTAGCAGCTTTGCTGTGTTA
1 CTATTAGTAGCTTTGCTGCGTTA
*
37970198 CTATTAGTAGCTTTGTTGCGTTA
1 CTATTAGTAGCTTTGCTGCGTTA
37970221 CTATTAGTAG
1 CTATTAGTAG
37970231 TTACACTGCG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.20, C:0.14, G:0.21, T:0.45
Consensus pattern (23 bp):
CTATTAGTAGCTTTGCTGCGTTA
Found at i:37973903 original size:56 final size:56
Alignment explanation
Indices: 37973806--37973914 Score: 148
Period size: 56 Copynumber: 1.9 Consensus size: 56
37973796 ACCATGGCAT
* * *
37973806 CAATATATGTGTGCGAGTAAGACCATGTTTTATACGTTGGCATCGATATGTGACTC
1 CAATATATGTGTGCGAGTAAGACCATGTCTGAGACGTTGGCATCGATATGTGACTC
* * *
37973862 CAATTTATGTGTGCGAGTAAGACCTTGTCTGGGACAG-TGGCATCGATATGTGA
1 CAATATATGTGTGCGAGTAAGACCATGTCTGAGAC-GTTGGCATCGATATGTGA
37973915 TTACATGCAA
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
56 45 0.98
57 1 0.02
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.32
Consensus pattern (56 bp):
CAATATATGTGTGCGAGTAAGACCATGTCTGAGACGTTGGCATCGATATGTGACTC
Found at i:37975675 original size:46 final size:46
Alignment explanation
Indices: 37975608--37975779 Score: 215
Period size: 46 Copynumber: 3.7 Consensus size: 46
37975598 AACCCGCCCC
*
37975608 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCACTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCACTCGCATCCA
* * *
37975654 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAG-TTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--GCACTCGCATCCA
* * * *
37975700 TTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCACTCGCATCCA
37975747 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
37975780 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 13, Indels: 14
0.80 0.10 0.11
Matches are distributed among these distances:
45 3 0.03
46 65 0.61
47 34 0.32
48 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCACTCGCATCCA
Found at i:37975720 original size:93 final size:93
Alignment explanation
Indices: 37975613--37975783 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
37975603 GCCCCTAAGT
*
37975613 GAACTCGGACTCAACTCAACGAGCTCGGGCACTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37975678 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
37975706 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37975771 CGAGTTCGGATGC
66 CGAGTTCGGATGC
37975784 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:37985786 original size:27 final size:27
Alignment explanation
Indices: 37985756--37985931 Score: 192
Period size: 27 Copynumber: 6.5 Consensus size: 27
37985746 ATTGAGTCCA
* * * *
37985756 CACACTCAGTGCTATATAATCAACTCG
1 CACACTTAGTGCTACATAGTCAAATCG
* *
37985783 CACACTTAGTGCTACGTAATCAAATCG
1 CACACTTAGTGCTACATAGTCAAATCG
37985810 CACACTTAGTGCTACATAGTCAAACTCG
1 CACACTTAGTGCTACATAGTCAAA-TCG
** * *
37985838 CACACTTAGTGCCGCATGGTCAATTCG
1 CACACTTAGTGCTACATAGTCAAATCG
* **
37985865 CACACTTAGTGC-ATCATATTCATTTCG
1 CACACTTAGTGCTA-CATAGTCAAATCG
* *
37985892 CACACTTAGTGCAATATAGTCAAATCG
1 CACACTTAGTGCTACATAGTCAAATCG
37985919 CACACTTAGTGCT
1 CACACTTAGTGCT
37985932 GTACAATTTA
Statistics
Matches: 127, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (27 bp):
CACACTTAGTGCTACATAGTCAAATCG
Found at i:37985893 original size:82 final size:81
Alignment explanation
Indices: 37985775--37985930 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
37985765 TGCTATATAA
* *
37985775 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
37985840 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
37985857 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAATATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
37985921 CACTTAGTGC
65 CACTTAGTGC
37985931 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:37986428 original size:12 final size:12
Alignment explanation
Indices: 37986411--37986436 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
37986401 ATGGCATACT
37986411 TATGTATATATA
1 TATGTATATATA
37986423 TATGTATATATA
1 TATGTATATATA
37986435 TA
1 TA
37986437 CTTCGGAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (12 bp):
TATGTATATATA
Found at i:37988722 original size:93 final size:93
Alignment explanation
Indices: 37988615--37988785 Score: 324
Period size: 93 Copynumber: 1.8 Consensus size: 93
37988605 GCCCCTAAGT
*
37988615 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37988680 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
37988708 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37988773 CGAGTTCGGATGC
66 CGAGTTCGGATGC
37988786 TCAACCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Done.