Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 120 of 316
Found at i:37988782 original size:46 final size:46
Alignment explanation
Indices: 37988610--37988782 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
37988600 AACCCGCCCC
* *
37988610 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
37988656 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
37988704 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
37988749 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
37988783 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:37992769 original size:79 final size:79
Alignment explanation
Indices: 37992658--37992881 Score: 283
Period size: 79 Copynumber: 2.8 Consensus size: 79
37992648 GCTACTCGTT
* * *
37992658 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
* *
37992723 ATTTAGTAACTCGCA
65 AATTAGTAACTCACA
* *
37992738 CCAATGCCTTCGGGCTTAGCCCGGA-ATTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
37992801 AATTAGTAACTCACA
65 AATTAGTAACTCACA
* * * * *
37992816 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
37992880 GA
64 GA
37992882 CATCATTCGA
Statistics
Matches: 125, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
78 35 0.28
79 58 0.46
80 32 0.26
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTCACA
Found at i:37992772 original size:39 final size:40
Alignment explanation
Indices: 37992660--37992881 Score: 258
Period size: 40 Copynumber: 5.6 Consensus size: 40
37992650 TACTCGTTCA
* * *
37992660 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACC
* *
37992700 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACC
37992740 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACC
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACC
* *
37992779 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCACACA
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACC
* * * *
37992818 AATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA-C
1 AATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCACC
*
37992858 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
37992882 CATCATTCGA
Statistics
Matches: 160, Mismatches: 15, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
38 2 0.01
39 73 0.46
40 77 0.48
41 8 0.05
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACC
Found at i:37994637 original size:10 final size:10
Alignment explanation
Indices: 37994622--37994661 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
37994612 ACAAAAGTTA
37994622 CAAAATAATT
1 CAAAATAATT
37994632 CAAAATAATTT
1 CAAAATAA-TT
*
37994643 TAAAA-AATT
1 CAAAATAATT
37994652 CAAAATAATT
1 CAAAATAATT
37994662 TTAAATTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
9 6 0.23
10 14 0.54
11 6 0.23
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (10 bp):
CAAAATAATT
Found at i:37994653 original size:20 final size:21
Alignment explanation
Indices: 37994623--37994666 Score: 81
Period size: 20 Copynumber: 2.1 Consensus size: 21
37994613 CAAAAGTTAC
37994623 AAAATAATTCAAAATAATTTT
1 AAAATAATTCAAAATAATTTT
37994644 AAAA-AATTCAAAATAATTTT
1 AAAATAATTCAAAATAATTTT
37994664 AAA
1 AAA
37994667 TTTTTAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 19 0.83
21 4 0.17
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (21 bp):
AAAATAATTCAAAATAATTTT
Found at i:37994708 original size:15 final size:16
Alignment explanation
Indices: 37994688--37994717 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
37994678 CTTATAAAAA
37994688 TTTTAAAAT-TTATAT
1 TTTTAAAATATTATAT
37994703 TTTTAAAATATTATA
1 TTTTAAAATATTATA
37994718 AAAAATTCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
TTTTAAAATATTATAT
Found at i:37994712 original size:35 final size:35
Alignment explanation
Indices: 37994633--37994730 Score: 108
Period size: 35 Copynumber: 2.7 Consensus size: 35
37994623 AAAATAATTC
* *
37994633 AAAATAATTTTAAAAAATTCAAAATAATTTTAAATTTTT
1 AAAAT-ATTATAAAAAATTC-TAA-AA-TTTAAATTTTT
* *
37994672 AAAATACTTAT-AAAAATTTTAAAATTTATATTTTT
1 AAAATA-TTATAAAAAATTCTAAAATTTAAATTTTT
37994707 AAAATATTATAAAAAATTCTAAAA
1 AAAATATTATAAAAAATTCTAAAA
37994731 CTATATATAA
Statistics
Matches: 52, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
34 4 0.08
35 28 0.54
36 2 0.04
37 2 0.04
38 8 0.15
39 8 0.15
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (35 bp):
AAAATATTATAAAAAATTCTAAAATTTAAATTTTT
Found at i:37994751 original size:22 final size:19
Alignment explanation
Indices: 37994705--37994761 Score: 53
Period size: 22 Copynumber: 2.8 Consensus size: 19
37994695 ATTTATATTT
*
37994705 TTAAAATATTATAAAAAAT
1 TTAAAATATTATAAAAAAG
37994724 TCTAAAACTATATATAAAGAAAG
1 T-TAAAA-TAT-TATAAA-AAAG
*
37994747 TTAAAAAATTA-AAAA
1 TTAAAATATTATAAAA
37994762 TTTAAAAAGG
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
18 1 0.03
19 4 0.12
20 7 0.22
21 5 0.16
22 11 0.34
23 4 0.12
ACGTcount: A:0.63, C:0.04, G:0.04, T:0.30
Consensus pattern (19 bp):
TTAAAATATTATAAAAAAG
Found at i:37994768 original size:16 final size:16
Alignment explanation
Indices: 37994747--37994780 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
37994737 ATAAAGAAAG
*
37994747 TTAAAAAATTAAAAAT
1 TTAAAAAAGTAAAAAT
*
37994763 TTAAAAAGGTAAAAAT
1 TTAAAAAAGTAAAAAT
37994779 TT
1 TT
37994781 TGGAGACCTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (16 bp):
TTAAAAAAGTAAAAAT
Found at i:38012353 original size:15 final size:15
Alignment explanation
Indices: 38012333--38012365 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
38012323 GAAAGGTGAT
38012333 CAAGTGTGGACAAGC
1 CAAGTGTGGACAAGC
38012348 CAAGTGTGGACAAGC
1 CAAGTGTGGACAAGC
38012363 CAA
1 CAA
38012366 TTTACATACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.36, C:0.21, G:0.30, T:0.12
Consensus pattern (15 bp):
CAAGTGTGGACAAGC
Found at i:38018916 original size:28 final size:29
Alignment explanation
Indices: 38018849--38018917 Score: 72
Period size: 28 Copynumber: 2.4 Consensus size: 29
38018839 TATTTAATCT
* *
38018849 ATAATTAATTTTATTTTTTATAATATAAAA
1 ATAA-TAATTTTATTATTTAAAATATAAAA
38018879 ATAA-ATATTTTA-TATTTAAAATAGTAAAA
1 ATAATA-ATTTTATTATTTAAAATA-TAAAA
38018908 A-AATAATTTT
1 ATAATAATTTT
38018918 TTAATCAAGT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
28 17 0.50
29 13 0.38
30 4 0.12
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (29 bp):
ATAATAATTTTATTATTTAAAATATAAAA
Found at i:38019038 original size:14 final size:14
Alignment explanation
Indices: 38019019--38019055 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
38019009 AAATAAGTCT
38019019 AAAAATTCAAAACC
1 AAAAATTCAAAACC
38019033 AAAAATTCAAAACC
1 AAAAATTCAAAACC
38019047 AAAAATTCA
1 AAAAATTCA
38019056 TTTAGAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.65, C:0.19, G:0.00, T:0.16
Consensus pattern (14 bp):
AAAAATTCAAAACC
Found at i:38020244 original size:29 final size:31
Alignment explanation
Indices: 38020196--38020257 Score: 110
Period size: 29 Copynumber: 2.1 Consensus size: 31
38020186 GAGTAAATTT
38020196 TTTTTATTATTATTTTAATGTCTATGGGATG
1 TTTTTATTATTATTTTAATGTCTATGGGATG
38020227 TTTTT-TT-TTATTTTAATGTCTATGGGATG
1 TTTTTATTATTATTTTAATGTCTATGGGATG
38020256 TT
1 TT
38020258 AGTAAAGTCG
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 24 0.77
30 2 0.06
31 5 0.16
ACGTcount: A:0.19, C:0.03, G:0.16, T:0.61
Consensus pattern (31 bp):
TTTTTATTATTATTTTAATGTCTATGGGATG
Found at i:38022767 original size:32 final size:32
Alignment explanation
Indices: 38022721--38022796 Score: 116
Period size: 32 Copynumber: 2.4 Consensus size: 32
38022711 TGATATTGAA
* *
38022721 ATGGGCTAGGCCCAACTGATACTGGTTCTGAT
1 ATGGGCTAGGCCCAACTGATACTGATTCTGAG
* *
38022753 ATGGTCTAGGCCCAACTGATATTGATTCTGAG
1 ATGGGCTAGGCCCAACTGATACTGATTCTGAG
38022785 ATGGGCTAGGCC
1 ATGGGCTAGGCC
38022797 TAATTGAGAC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (32 bp):
ATGGGCTAGGCCCAACTGATACTGATTCTGAG
Found at i:38022778 original size:26 final size:26
Alignment explanation
Indices: 38022711--38022778 Score: 64
Period size: 32 Copynumber: 2.4 Consensus size: 26
38022701 CATATGGGTT
*
38022711 TGATATTGAAATGGGCTAGGCCCAAC
1 TGATATTGATATGGGCTAGGCCCAAC
*
38022737 TGATACTGGTTCTGATATGGTCTAGGCCCAAC
1 TGATA-----T-TGATATGGGCTAGGCCCAAC
38022769 TGATATTGAT
1 TGATATTGAT
38022779 TCTGAGATGG
Statistics
Matches: 34, Mismatches: 2, Indels: 12
0.71 0.04 0.25
Matches are distributed among these distances:
26 9 0.26
27 1 0.03
31 1 0.03
32 23 0.68
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (26 bp):
TGATATTGATATGGGCTAGGCCCAAC
Found at i:38025346 original size:30 final size:28
Alignment explanation
Indices: 38025307--38025368 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 28
38025297 ATGGATTTAA
38025307 ATTACTTATTATTGAAGTAAATAAATATTT
1 ATTACTTATTATT-AAGTAAA-AAATATTT
* * *
38025337 ATTATTTATTATTAAGTTAAAGATATTT
1 ATTACTTATTATTAAGTAAAAAATATTT
38025365 ATTA
1 ATTA
38025369 ATTAAATAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 11 0.38
29 6 0.21
30 12 0.41
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (28 bp):
ATTACTTATTATTAAGTAAAAAATATTT
Found at i:38025383 original size:21 final size:20
Alignment explanation
Indices: 38025328--38025384 Score: 51
Period size: 21 Copynumber: 2.7 Consensus size: 20
38025318 TTGAAGTAAA
*
38025328 TAAATATTTATTATTTATTAT
1 TAAATAATTA-TATTTATTAT
* **
38025349 TAAGTTAAAGATATTTATTAAT
1 TAA-ATAATTATATTTATT-AT
38025371 TAAATAATTATATT
1 TAAATAATTATATT
38025385 ACAAGATTTT
Statistics
Matches: 27, Mismatches: 7, Indels: 4
0.71 0.18 0.11
Matches are distributed among these distances:
21 19 0.70
22 8 0.30
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.53
Consensus pattern (20 bp):
TAAATAATTATATTTATTAT
Found at i:38026720 original size:39 final size:39
Alignment explanation
Indices: 38026677--38026822 Score: 184
Period size: 39 Copynumber: 3.7 Consensus size: 39
38026667 AGGGGTAAGC
38026677 TACTGTACTGAATAATTGATAGTTACTGAATAACTAAAT
1 TACTGTACTGAATAATTGATAGTTACTGAATAACTAAAT
** * * *
38026716 TACTGTTTTGAATAATTGATAATTATTGAATAACTAAAC
1 TACTGTACTGAATAATTGATAGTTACTGAATAACTAAAT
* * * *
38026755 TACTGCACTAAATATTTGATAGTTACTGAATGACTAAAT
1 TACTGTACTGAATAATTGATAGTTACTGAATAACTAAAT
* * *
38026794 TACTGTACTGAATAACTAATTGTTACTGA
1 TACTGTACTGAATAATTGATAGTTACTGA
38026823 TTAAATATGA
Statistics
Matches: 87, Mismatches: 20, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
39 87 1.00
ACGTcount: A:0.39, C:0.11, G:0.12, T:0.38
Consensus pattern (39 bp):
TACTGTACTGAATAATTGATAGTTACTGAATAACTAAAT
Found at i:38028797 original size:27 final size:27
Alignment explanation
Indices: 38028749--38028853 Score: 135
Period size: 27 Copynumber: 3.9 Consensus size: 27
38028739 GCGAGGCTGC
* *
38028749 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
38028776 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
38028802 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
38028829 CAGATACTTGTGGCATAGCCACCAG
1 CAGATA-TTGTGGCAGAGCCACCAG
38028854 GATGCTTCCT
Statistics
Matches: 71, Mismatches: 3, Indels: 8
0.87 0.04 0.10
Matches are distributed among these distances:
26 8 0.11
27 61 0.86
28 2 0.03
ACGTcount: A:0.33, C:0.23, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:38041990 original size:26 final size:26
Alignment explanation
Indices: 38041961--38042022 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
38041951 AAAATCATCT
38041961 CTTTCAAAAACCAAGGTTT-AGAAAAA
1 CTTTCAAAAACCAA-GTTTGAGAAAAA
* * *
38041987 CTTTTGAAAACCCAATTTTGAGAAAAA
1 C-TTTCAAAAACCAAGTTTGAGAAAAA
*
38042014 TTTTCAAAA
1 CTTTCAAAA
38042023 GCCCATTCCA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
26 11 0.38
27 18 0.62
ACGTcount: A:0.47, C:0.15, G:0.10, T:0.29
Consensus pattern (26 bp):
CTTTCAAAAACCAAGTTTGAGAAAAA
Found at i:38045584 original size:30 final size:28
Alignment explanation
Indices: 38045543--38045604 Score: 97
Period size: 28 Copynumber: 2.1 Consensus size: 28
38045533 ATGGAATTAA
38045543 ATTACTTATTATTGAAGTAAATAGATATTT
1 ATTACTTATTATT-AAGTAAA-AGATATTT
*
38045573 ATTATTTATTATTAAGTAAAAGATATTT
1 ATTACTTATTATTAAGTAAAAGATATTT
38045601 ATTA
1 ATTA
38045605 ATTAAATAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 12 0.39
29 7 0.23
30 12 0.39
ACGTcount: A:0.42, C:0.02, G:0.08, T:0.48
Consensus pattern (28 bp):
ATTACTTATTATTAAGTAAAAGATATTT
Found at i:38046946 original size:39 final size:39
Alignment explanation
Indices: 38046898--38047048 Score: 167
Period size: 39 Copynumber: 3.9 Consensus size: 39
38046888 TTAATAGGGG
*
38046898 TAAACTACTGTATTGAATAATTGATAGTTACTGAATAAC
1 TAAACTACTGTACTGAATAATTGATAGTTACTGAATAAC
* * * * **
38046937 TAAATTACTGTATTGAGTAATTAATAGTTTTTGAATAAC
1 TAAACTACTGTACTGAATAATTGATAGTTACTGAATAAC
* * * * *
38046976 TAAACTACCGCACTGAATATTTGATAGTTACTAAATGAC
1 TAAACTACTGTACTGAATAATTGATAGTTACTGAATAAC
* * *
38047015 TAAATTACTGTACTGAATAACTGATTGTTACTGA
1 TAAACTACTGTACTGAATAATTGATAGTTACTGA
38047049 TTAAATATGA
Statistics
Matches: 89, Mismatches: 23, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
39 89 1.00
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.37
Consensus pattern (39 bp):
TAAACTACTGTACTGAATAATTGATAGTTACTGAATAAC
Found at i:38049634 original size:29 final size:30
Alignment explanation
Indices: 38049574--38049686 Score: 105
Period size: 29 Copynumber: 3.9 Consensus size: 30
38049564 CATACATGCA
* *
38049574 TATGGCCCA-CTAGGCTTAA-TC-TCATTCA
1 TATGGCCCATCTAGGCCTAATTCAT-ATTCT
*
38049602 TATGGCCCATCTA-GCCTAGTTCATATTCT
1 TATGGCCCATCTAGGCCTAATTCATATTCT
* *
38049631 TATGGCCCA-CTAGGCCCAATTCACATT-T
1 TATGGCCCATCTAGGCCTAATTCATATTCT
*
38049659 ATATGGCCCAT-TAGGCCTAAATCATATT
1 -TATGGCCCATCTAGGCCTAATTCATATT
38049687 ATTCTCATAC
Statistics
Matches: 70, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
28 17 0.24
29 52 0.74
30 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.14, T:0.33
Consensus pattern (30 bp):
TATGGCCCATCTAGGCCTAATTCATATTCT
Found at i:38049636 original size:57 final size:58
Alignment explanation
Indices: 38049574--38049686 Score: 149
Period size: 58 Copynumber: 2.0 Consensus size: 58
38049564 CATACATGCA
** * **
38049574 TATGGCCCACTAGGCTTAA-TCTCATTCATATGGCCCATCTA-GCCTAGTTCATATTCT
1 TATGGCCCACTAGGCCCAATTCACATTCATATGGCCCAT-TAGGCCTAAATCATATTCT
*
38049631 TATGGCCCACTAGGCCCAATTCACATTTATATGGCCCATTAGGCCTAAATCATATT
1 TATGGCCCACTAGGCCCAATTCACATTCATATGGCCCATTAGGCCTAAATCATATT
38049687 ATTCTCATAC
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
57 19 0.40
58 29 0.60
ACGTcount: A:0.26, C:0.27, G:0.14, T:0.33
Consensus pattern (58 bp):
TATGGCCCACTAGGCCCAATTCACATTCATATGGCCCATTAGGCCTAAATCATATTCT
Found at i:38057137 original size:118 final size:119
Alignment explanation
Indices: 38056955--38057175 Score: 290
Period size: 118 Copynumber: 1.9 Consensus size: 119
38056945 TCCTCGTTCA
*
38056955 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACTCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACTCGGAT
* *
38057020 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGTTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGTTTAGTAACTCGCACC
* * *
38057074 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTT-AGTCCG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACT-CG
* * *
38057135 GATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGG
63 GATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGG
38057176 ACATCATTCA
Statistics
Matches: 89, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
117 6 0.07
118 63 0.71
119 20 0.22
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACTCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGTTTAGTAACTCGCACC
Found at i:38057176 original size:40 final size:40
Alignment explanation
Indices: 38056953--38057176 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
38056943 GCTCCTCGTT
* *
38056953 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
38056993 CAAATGCCTTCGGGACTTAACTCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
38057033 CAAATGCCTTCGGGACTTAACCCGG-TTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
38057072 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
38057111 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
38057152 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
38057177 CATCATTCAA
Statistics
Matches: 160, Mismatches: 17, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
38 11 0.07
39 48 0.30
40 89 0.56
41 12 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:38065071 original size:79 final size:81
Alignment explanation
Indices: 38064887--38065111 Score: 273
Period size: 80 Copynumber: 2.8 Consensus size: 81
38064877 GCTCCTCGTT
*
38064887 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCG
*
38064951 GATTTAGTAACTCGCA
66 GAATTAGTAACTCGCA
* * * * *
38064967 CAAATGCCTTCGGGACTCAACCCGGATT-TAGTAACTCGCACCAATGCCTTCG-GGCTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCG
*
38065030 GAATTAGTATCTCGCA
66 GAATTAGTAACTCGCA
* * * * *
38065046 CAAATGCCTTC-GGATCTTAGTCCGGA-TATGGTCACTTAGCACAAA-GCCTTCGAGACTTAGCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTATAGTAAC-TCGCACAAATGCCTTCGAGACTTAACC
38065108 CGGA
64 CGGA
38065112 CATCATTCAA
Statistics
Matches: 124, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
78 4 0.03
79 54 0.44
80 64 0.52
81 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCG
GAATTAGTAACTCGCA
Found at i:38065095 original size:119 final size:120
Alignment explanation
Indices: 38064889--38065111 Score: 283
Period size: 119 Copynumber: 1.9 Consensus size: 120
38064879 TCCTCGTTCA
*
38064889 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCGGAT
* * *
38064954 TTAGTAACTCGCACAAATGCCTTCGGGACTCAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTAGCACAAATGCCTTCGAGACTCAACCCGGATTTAGTAACTCGCACC
* * **
38065009 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTCG-GATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGAGA-CTTAACCCGG
* * * *
38065071 ATATGGTCACTTAGCACAAA-GCCTTCGAGACTTAGCCCGGA
64 ATATAGTAAC-TAGCACAAATGCCTTCGAGACTCAACCCGGA
38065112 CATCATTCAA
Statistics
Matches: 88, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
118 3 0.03
119 65 0.74
120 20 0.23
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCGGAT
ATAGTAACTAGCACAAATGCCTTCGAGACTCAACCCGGATTTAGTAACTCGCACC
Found at i:38065111 original size:40 final size:39
Alignment explanation
Indices: 38064887--38065111 Score: 247
Period size: 40 Copynumber: 5.6 Consensus size: 39
38064877 GCTCCTCGTT
* *
38064887 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATATAGTAACTCGCA
* *
38064927 CAAATGCCTTCGAGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCG-GACTTAGCCCGGATATAGTAACTCGCA
* * *
38064967 CAAATGCCTTCGGGACTCAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATATAGTAACTCGCA
* * *
38065007 CCAATGCCTTCGGGCTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
38065046 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATATAGTAAC-TCGCA
38065087 CAAA-GCCTTCGAGACTTAGCCCGGA
1 CAAATGCCTTCG-GACTTAGCCCGGA
38065112 CATCATTCAA
Statistics
Matches: 159, Mismatches: 19, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
39 35 0.22
40 112 0.70
41 12 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:38069372 original size:41 final size:41
Alignment explanation
Indices: 38069327--38069456 Score: 97
Period size: 40 Copynumber: 3.1 Consensus size: 41
38069317 AAAACATGTC
38069327 ATAAACATGTTGGGGTAGTGCATTATGTAAGGATTAATAAA
1 ATAAACATGTTGGGGTAGTGCATTATGTAAGGATTAATAAA
* * ** * * * *
38069368 ATAAAGA-GCAT-GGGT-G-GACAAGATGTTATGGCTAAAAAAA
1 ATAAACATG-TTGGGGTAGTG-CATTATG-TAAGGATTAATAAA
38069408 TGTCATAAACATGTTGGGGTAGTGCATTATGTAAGGATTAATAAA
1 ----ATAAACATGTTGGGGTAGTGCATTATGTAAGGATTAATAAA
38069453 ATAA
1 ATAA
38069457 CAAGATGTTA
Statistics
Matches: 62, Mismatches: 16, Indels: 22
0.62 0.16 0.22
Matches are distributed among these distances:
38 1 0.02
39 6 0.10
40 15 0.24
41 11 0.18
44 7 0.11
45 15 0.24
46 6 0.10
47 1 0.02
ACGTcount: A:0.41, C:0.06, G:0.25, T:0.28
Consensus pattern (41 bp):
ATAAACATGTTGGGGTAGTGCATTATGTAAGGATTAATAAA
Found at i:38069431 original size:85 final size:85
Alignment explanation
Indices: 38069288--38069456 Score: 329
Period size: 85 Copynumber: 2.0 Consensus size: 85
38069278 GGCCGGCCAT
*
38069288 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAAAATGTCATAAACATGTTGGGGTAGTGCATTAT
38069353 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
38069373 GAGCATGGGTGGACAAGATGTTATGGCTAAAAAAATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAAAATGTCATAAACATGTTGGGGTAGTGCATTAT
38069438 GTAAGGATTAATAAAATAA
66 GTAAGGATTAATAAAATAA
38069457 CAAGATGTTA
Statistics
Matches: 83, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 83 1.00
ACGTcount: A:0.39, C:0.08, G:0.26, T:0.27
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAAAATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:38069501 original size:71 final size:71
Alignment explanation
Indices: 38069385--38069527 Score: 286
Period size: 71 Copynumber: 2.0 Consensus size: 71
38069375 GCATGGGTGG
38069385 ACAAGATGTTATGGCTAAAAAAATGTCATAAACATGTTGGGGTAGTGCATTATGTAAGGATTAAT
1 ACAAGATGTTATGGCTAAAAAAATGTCATAAACATGTTGGGGTAGTGCATTATGTAAGGATTAAT
38069450 AAAATA
66 AAAATA
38069456 ACAAGATGTTATGGCTAAAAAAATGTCATAAACATGTTGGGGTAGTGCATTATGTAAGGATTAAT
1 ACAAGATGTTATGGCTAAAAAAATGTCATAAACATGTTGGGGTAGTGCATTATGTAAGGATTAAT
38069521 AAAATA
66 AAAATA
38069527 A
1 A
38069528 AGAGCATGGG
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 72 1.00
ACGTcount: A:0.43, C:0.07, G:0.21, T:0.29
Consensus pattern (71 bp):
ACAAGATGTTATGGCTAAAAAAATGTCATAAACATGTTGGGGTAGTGCATTATGTAAGGATTAAT
AAAATA
Found at i:38069584 original size:156 final size:156
Alignment explanation
Indices: 38069300--38069612 Score: 608
Period size: 156 Copynumber: 2.0 Consensus size: 156
38069290 GCATGGGTGG
*
38069300 ACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTATGTAAGGATTAAT
1 ACAAGATGTTATGGCTAAAAAAATGTCATAAACATGTTGGGGTAGTGCATTATGTAAGGATTAAT
38069365 AAAATAAAGAGCATGGGTGGACAAGATGTTATGGCTAAAAAAATGTCATAAACATGTTGGGGTAG
66 AAAATAAAGAGCATGGGTGGACAAGATGTTATGGCTAAAAAAATGTCATAAACATGTTGGGGTAG
38069430 TGCATTATGTAAGGATTAATAAAATA
131 TGCATTATGTAAGGATTAATAAAATA
38069456 ACAAGATGTTATGGCTAAAAAAATGTCATAAACATGTTGGGGTAGTGCATTATGTAAGGATTAAT
1 ACAAGATGTTATGGCTAAAAAAATGTCATAAACATGTTGGGGTAGTGCATTATGTAAGGATTAAT
*
38069521 AAAATAAAGAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAG
66 AAAATAAAGAGCATGGGTGGACAAGATGTTATGGCTAAAAAAATGTCATAAACATGTTGGGGTAG
38069586 TGCATTATGTAAGGATTAATAAAATA
131 TGCATTATGTAAGGATTAATAAAATA
38069612 A
1 A
38069613 AGGGCATGGG
Statistics
Matches: 155, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
156 155 1.00
ACGTcount: A:0.41, C:0.08, G:0.24, T:0.28
Consensus pattern (156 bp):
ACAAGATGTTATGGCTAAAAAAATGTCATAAACATGTTGGGGTAGTGCATTATGTAAGGATTAAT
AAAATAAAGAGCATGGGTGGACAAGATGTTATGGCTAAAAAAATGTCATAAACATGTTGGGGTAG
TGCATTATGTAAGGATTAATAAAATA
Found at i:38069599 original size:85 final size:85
Alignment explanation
Indices: 38069456--38069622 Score: 316
Period size: 85 Copynumber: 2.0 Consensus size: 85
38069446 TAATAAAATA
38069456 ACAAGATGTTATGGCTAAAAAAATGTCATAAACATGTTGGGGTAGTGCATTATGTAAGGATTAAT
1 ACAAGATGTTATGGCTAAAAAAATGTCATAAACATGTTGGGGTAGTGCATTATGTAAGGATTAAT
38069521 AAAATAAAGAGCATGGGTGG
66 AAAATAAAGAGCATGGGTGG
*
38069541 ACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTATGTAAGGATTAAT
1 ACAAGATGTTATGGCTAAAAAAATGTCATAAACATGTTGGGGTAGTGCATTATGTAAGGATTAAT
*
38069606 AAAATAAAGGGCATGGG
66 AAAATAAAGAGCATGGG
38069623 CAATAAAATA
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 80 1.00
ACGTcount: A:0.40, C:0.08, G:0.26, T:0.27
Consensus pattern (85 bp):
ACAAGATGTTATGGCTAAAAAAATGTCATAAACATGTTGGGGTAGTGCATTATGTAAGGATTAAT
AAAATAAAGAGCATGGGTGG
Found at i:38071667 original size:56 final size:56
Alignment explanation
Indices: 38071581--38071756 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
38071571 TATTAGTTTA
*
38071581 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
38071637 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
38071693 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
38071749 TTGCCCAT
1 TTGCCCAT
38071757 CATCCCTTGT
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:38077671 original size:79 final size:82
Alignment explanation
Indices: 38077554--38077738 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
38077544 GCTACTCGTT
* * *
38077554 CAAATGCCTTCGGGTCATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
38077617 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
38077634 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
38077697 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
38077714 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
38077739 CATCATTCGA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:38077738 original size:40 final size:40
Alignment explanation
Indices: 38077535--38077738 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
38077525 CAGAATTTAA
** * *
38077535 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGTCATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
38077575 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
38077615 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
38077654 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
38077694 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
38077734 CCGGA
1 CCGGA
38077739 CATCATTCGA
Statistics
Matches: 140, Mismatches: 17, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 93 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:38078931 original size:56 final size:56
Alignment explanation
Indices: 38078864--38079039 Score: 334
Period size: 56 Copynumber: 3.1 Consensus size: 56
38078854 TATTAGTTTA
*
38078864 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
38078920 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
*
38078976 TTGCCTATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
38079032 TTGCCCAT
1 TTGCCCAT
38079040 CATCCCTTGT
Statistics
Matches: 117, Mismatches: 3, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
56 117 1.00
ACGTcount: A:0.23, C:0.22, G:0.09, T:0.46
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:38079404 original size:47 final size:47
Alignment explanation
Indices: 38079335--38079703 Score: 519
Period size: 47 Copynumber: 7.8 Consensus size: 47
38079325 GGGCTGTCAC
* * *
38079335 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
38079382 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
38079429 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
38079478 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
38079525 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
38079574 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
38079621 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
38079668 GATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGG
38079704 TGAGATAAGG
Statistics
Matches: 303, Mismatches: 14, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
47 211 0.70
49 91 0.30
50 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:38079596 original size:143 final size:142
Alignment explanation
Indices: 38079335--38079853 Score: 605
Period size: 143 Copynumber: 3.5 Consensus size: 142
38079325 GGGCTGTCAC
* * *
38079335 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * * * *
38079400 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG-ATGTATATGTGATAAGGCCGAAT
*
38079465 GGCCGATGTGATG
130 GGCCAATGTGATG
38079478 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATA
*
38079543 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG-TGTATGTGTGATAAGGCCGA
64 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGATGTATATGTGATAAGGCCGA
38079606 ATGGCCAATGTGATG
128 ATGGCCAATGTGATG
* * * *
38079621 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGGATGTGAACA-TGTGTA
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATA
* ** *
38079684 TGTGTGATAAGGCCGAATGGTGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATA
64 TATGTGATAAGGCCGAATGGCCA-AT---G-TG-AT-G--AATGTGA--AA-GTG---ATG--TA
*
38079749 TATGAGATAAGGCCGAATGGCCAATGTGATG
112 TATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
38079780 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAAGTGTATAAA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
38079845 TGTGATAAG
66 TGTGATAAG
38079854 TCCCGAAGGG
Statistics
Matches: 324, Mismatches: 26, Indels: 36
0.84 0.07 0.09
Matches are distributed among these distances:
141 23 0.07
142 2 0.01
143 139 0.43
144 2 0.01
145 43 0.13
146 2 0.01
147 2 0.01
148 1 0.00
150 7 0.02
151 1 0.00
152 1 0.00
153 2 0.01
157 2 0.01
158 2 0.01
159 95 0.29
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.27
Consensus pattern (142 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGATGTATATGTGATAAGGCCGAATG
GCCAATGTGATG
Found at i:38079714 original size:65 final size:65
Alignment explanation
Indices: 38079639--38079768 Score: 215
Period size: 65 Copynumber: 2.0 Consensus size: 65
38079629 CATGCATATA
* ** * *
38079639 TGAGATAAGGCCGAATGGCCAATGTGATGGATGTGAACATGTGTATGTGTGATAAGGCCGAATGG
1 TGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGG
38079704 TGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGG
1 TGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGG
38079769 CCAATGTGAT
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
65 60 1.00
ACGTcount: A:0.32, C:0.12, G:0.33, T:0.23
Consensus pattern (65 bp):
TGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGG
Found at i:38079720 original size:96 final size:95
Alignment explanation
Indices: 38079335--38079853 Score: 539
Period size: 96 Copynumber: 5.3 Consensus size: 95
38079325 GGGCTGTCAC
* * * * *
38079335 AATGTGAAAGTG-TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA-AGTGTATA
1 AATGTGAAAGTGACATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGTA
* * * *
38079398 TATGTGATAAGGCCTAATAGCCGATGTGATG
65 TGTGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
38079429 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA-AGTGTAT
1 AATGTGAAAGTG-ACATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGT
*
38079493 ATATGTGATAAGGCCGAATGGCCAATGTGATG
64 ATGTGTGATAAGGCCGAATGGCCAATGTGATG
*
38079525 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTA
1 AATGTGAAAGTG-ACATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTA
38079590 TGTGTGATAAGGCCGAATGGCCAATGTGATG
65 TGTGTGATAAGGCCGAATGGCCAATGTGATG
* *
38079621 AATGTGAACA-TG-CATATATGAGATAAGGCCGAATGGCCAATGTGATGGATGTGAACATGTGTA
1 AATGTGAA-AGTGACATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTA
** *
38079684 TGTGTGATAAGGCCGAATGGTGAGATAAGGCCGAATGG
65 TGTGTGATAAGGCCGAATGGCCA-AT---G-TG-AT-G
*
38079722 CCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 --AATGTGA--AA-GTG-ACAT--ATA--TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
38079787 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
56 ACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
38079827 GATGTGGAAGTG-TATAAATGTGATAAG
1 AATGTGAAAGTGACATATATGTGATAAG
38079854 TCCCGAAGGG
Statistics
Matches: 376, Mismatches: 25, Indels: 48
0.84 0.06 0.11
Matches are distributed among these distances:
94 89 0.24
95 2 0.01
96 180 0.48
97 2 0.01
98 3 0.01
99 1 0.00
100 5 0.01
101 3 0.01
103 12 0.03
104 1 0.00
105 2 0.01
106 4 0.01
107 1 0.00
108 4 0.01
110 3 0.01
111 3 0.01
112 61 0.16
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.27
Consensus pattern (95 bp):
AATGTGAAAGTGACATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTAT
GTGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:38079721 original size:112 final size:112
Alignment explanation
Indices: 38079595--38079815 Score: 399
Period size: 112 Copynumber: 2.0 Consensus size: 112
38079585 GTGTATGTGT
38079595 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
* * *
38079660 ATGTGATGGATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGTGA
66 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGTGA
38079707 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
38079772 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
66 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
38079816 CCAATGTGAT
Statistics
Matches: 105, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
111 1 0.01
112 104 0.99
ACGTcount: A:0.33, C:0.11, G:0.31, T:0.24
Consensus pattern (112 bp):
GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGTGA
Found at i:38079755 original size:47 final size:47
Alignment explanation
Indices: 38079704--38079853 Score: 221
Period size: 47 Copynumber: 3.2 Consensus size: 47
38079694 GGCCGAATGG
38079704 TGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGCATATA
1 TGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGCATATA
*
38079751 TGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 TGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCATATA
* * * * *
38079798 TGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAAGTGTATAAA
1 TGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCATATA
*
38079845 TGTGATAAG
1 TGAGATAAG
38079854 TCCCGAAGGG
Statistics
Matches: 97, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
46 1 0.01
47 96 0.99
ACGTcount: A:0.35, C:0.09, G:0.31, T:0.25
Consensus pattern (47 bp):
TGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCATATA
Found at i:38079849 original size:159 final size:159
Alignment explanation
Indices: 38079548--38079853 Score: 492
Period size: 159 Copynumber: 1.9 Consensus size: 159
38079538 ATATATATGT
** * *
38079548 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCA
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
38079613 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGGATGTGAACA
66 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGGATGTGAACA
*
38079678 TGTGTATGTGTGATAAGGCCGAATGGTGA
131 TGTGTATATGTGATAAGGCCGAATGGTGA
38079707 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
* * *
38079772 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGA-
66 ATGTGATGAATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGGATGTGAAC
38079835 A-GTGTATAAATGTGATAAG
130 ATGTGTAT--ATGTGATAAG
38079854 TCCCGAAGGG
Statistics
Matches: 136, Mismatches: 8, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
157 6 0.04
158 2 0.01
159 128 0.94
ACGTcount: A:0.33, C:0.10, G:0.31, T:0.25
Consensus pattern (159 bp):
GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGGATGTGAACA
TGTGTATATGTGATAAGGCCGAATGGTGA
Found at i:38082347 original size:38 final size:38
Alignment explanation
Indices: 38082283--38082357 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
38082273 AATCCGAGTT
*
38082283 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
38082321 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
38082358 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:38082507 original size:40 final size:40
Alignment explanation
Indices: 38082411--38082723 Score: 419
Period size: 40 Copynumber: 8.1 Consensus size: 40
38082401 AGGTCTCGAC
38082411 GATG-ATCCGGGCTAAGTCCCG-AGAGCATTCATGCTA--
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
38082447 G-TG-ATCC-GG-TAAGT-CCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
38082482 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
38082522 GATGTATCCGGGCTAAGTCCCAAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
38082562 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * *
38082602 GAAGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * ** * * *
38082642 GATATATCCGTGCTAAACCCCAAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * *
38082682 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
38082722 GA
1 GA
38082724 CGTGTATTCG
Statistics
Matches: 244, Mismatches: 25, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
32 3 0.01
33 19 0.08
34 2 0.01
35 7 0.03
36 3 0.01
37 4 0.02
38 2 0.01
39 5 0.02
40 199 0.82
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:38082927 original size:25 final size:25
Alignment explanation
Indices: 38082886--38082937 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
38082876 TGTGTAATAA
38082886 TGAATGAATAAGAGCACTATGTGTG
1 TGAATGAATAAGAGCACTATGTGTG
* *
38082911 TGAATG-ATTAGAGGCACTGTGTGTG
1 TGAATGAATAAGA-GCACTATGTGTG
38082936 TG
1 TG
38082938 CGAATTCCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.29, C:0.08, G:0.33, T:0.31
Consensus pattern (25 bp):
TGAATGAATAAGAGCACTATGTGTG
Found at i:38084108 original size:85 final size:85
Alignment explanation
Indices: 38083965--38084228 Score: 519
Period size: 85 Copynumber: 3.1 Consensus size: 85
38083955 GGCCGGCCAT
38083965 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
38084030 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
38084050 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
38084115 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
38084135 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
38084200 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
38084220 GGGCATGGG
1 GAGCATGGG
38084229 CAATAAAATA
Statistics
Matches: 178, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 178 1.00
ACGTcount: A:0.38, C:0.08, G:0.27, T:0.27
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:38085547 original size:47 final size:47
Alignment explanation
Indices: 38085493--38085908 Score: 586
Period size: 47 Copynumber: 8.8 Consensus size: 47
38085483 TATTTGAATA
* * *
38085493 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
38085540 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
38085587 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
38085634 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
38085683 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCTAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
38085730 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
38085779 AATCTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
38085826 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
38085873 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGG
38085909 TGAGATAAGG
Statistics
Matches: 347, Mismatches: 17, Indels: 10
0.93 0.05 0.03
Matches are distributed among these distances:
47 256 0.74
49 90 0.26
50 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:38085680 original size:96 final size:94
Alignment explanation
Indices: 38085493--38085908 Score: 586
Period size: 96 Copynumber: 4.4 Consensus size: 94
38085483 TATTTGAATA
* * *
38085493 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * *
38085558 TGTGATAAGGCCTAATAGCCGATGTGATG
66 TGTGATAAGGCCGAATGGCCAATGTGATG
* *
38085587 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATA
* *
38085652 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
*
38085683 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCTAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATA
38085748 TATGTGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
38085779 AATCTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGCATA
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATA
*
38085842 TATGAGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
38085873 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGG
38085909 TGAGATAAGG
Statistics
Matches: 304, Mismatches: 14, Indels: 8
0.93 0.04 0.02
Matches are distributed among these distances:
94 126 0.41
96 176 0.58
97 2 0.01
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:38085801 original size:143 final size:141
Alignment explanation
Indices: 38085493--38086058 Score: 654
Period size: 143 Copynumber: 3.9 Consensus size: 141
38085483 TATTTGAATA
* * *
38085493 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 AATGTGAACA-TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* * * *
38085557 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
65 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
*
38085622 GCCGATGTGATG
130 GCCAATGTGATG
* *
38085634 AATGTGAA-AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 AATGTGAACA-TG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
*
38085698 ATATGTGATAAGGCCGAATGGCTAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCG
63 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCG
38085763 AATGGCCAATGTGATG
126 AATGGCCAATGTGATG
* * * *
38085779 AATCTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGCATAT
1 AATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATAT
* * *
38085843 ATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGTATGTGTGATAAGGCCGAAT
65 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCC----
*
38085907 GGTGAGATAAGGCCGAATGGCCAATGTGATA
125 ---GA-AT---G--G-----CCAATGTGATG
* *
38085938 AATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * *
38086003 TGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAAGTGTATAAATGTGATAAG
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
38086059 TCCCGAAGGG
Statistics
Matches: 368, Mismatches: 30, Indels: 36
0.85 0.07 0.08
Matches are distributed among these distances:
141 28 0.08
143 172 0.47
144 2 0.01
145 42 0.11
146 1 0.00
148 2 0.01
149 2 0.01
152 1 0.00
154 1 0.00
158 2 0.01
159 115 0.31
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (141 bp):
AATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
CCAATGTGATG
Found at i:38085918 original size:65 final size:65
Alignment explanation
Indices: 38085844--38085973 Score: 215
Period size: 65 Copynumber: 2.0 Consensus size: 65
38085834 CATGCATATA
* ** * *
38085844 TGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGG
1 TGAGATAAGGCCGAATGGCCAATGTGATAAATGTGAACATGCATATATGAGATAAGGCCGAATGG
38085909 TGAGATAAGGCCGAATGGCCAATGTGATAAATGTGAACATGCATATATGAGATAAGGCCGAATGG
1 TGAGATAAGGCCGAATGGCCAATGTGATAAATGTGAACATGCATATATGAGATAAGGCCGAATGG
38085974 CCAATGTGAT
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
65 60 1.00
ACGTcount: A:0.34, C:0.12, G:0.32, T:0.23
Consensus pattern (65 bp):
TGAGATAAGGCCGAATGGCCAATGTGATAAATGTGAACATGCATATATGAGATAAGGCCGAATGG
Found at i:38085926 original size:112 final size:112
Alignment explanation
Indices: 38085800--38086020 Score: 399
Period size: 112 Copynumber: 2.0 Consensus size: 112
38085790 GTGTATGTGT
*
38085800 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 GATAAGGCCGAATGGCCAATGTGATAAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
* *
38085865 ATGTGATGAATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGTGA
66 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGTGA
38085912 GATAAGGCCGAATGGCCAATGTGATAAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 GATAAGGCCGAATGGCCAATGTGATAAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
38085977 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
66 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
38086021 CCAATGTGAT
Statistics
Matches: 105, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
111 1 0.01
112 104 0.99
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.24
Consensus pattern (112 bp):
GATAAGGCCGAATGGCCAATGTGATAAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGTGA
Found at i:38085965 original size:47 final size:47
Alignment explanation
Indices: 38085909--38086058 Score: 203
Period size: 47 Copynumber: 3.2 Consensus size: 47
38085899 GGCCGAATGG
38085909 TGAGATAAGGCCGAATGGCCAATGTGATAAATGTGAACA-TGCATATA
1 TGAGATAAGGCCGAATGGCCAATGTGATAAATGTGAA-AGTGCATATA
* *
38085956 TGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 TGAGATAAGGCCGAATGGCCAATGTGATAAATGTGAAAGTGCATATA
* ** * * *
38086003 TGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAAGTGTATAAA
1 TGAGATAAGGCCGAATGGCCAATGTGATAAATGTGAAAGTGCATATA
*
38086050 TGTGATAAG
1 TGAGATAAG
38086059 TCCCGAAGGG
Statistics
Matches: 96, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
46 1 0.01
47 95 0.99
ACGTcount: A:0.35, C:0.09, G:0.30, T:0.25
Consensus pattern (47 bp):
TGAGATAAGGCCGAATGGCCAATGTGATAAATGTGAAAGTGCATATA
Found at i:38086054 original size:159 final size:159
Alignment explanation
Indices: 38085753--38086058 Score: 465
Period size: 159 Copynumber: 1.9 Consensus size: 159
38085743 ATATATATGT
* ** * *
38085753 GATAAGGCCGAATGGCCAATGTGATGAATCTGAACATGTGTATGTGTGATAAGGCCGAATGGCCA
1 GATAAGGCCGAATGGCCAATGTGATAAATCTGAACATGCATATATGAGATAAGGCCGAATGGCCA
38085818 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
66 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
38085883 TGTGTATGTGTGATAAGGCCGAATGGTGA
131 TGTGTATATGTGATAAGGCCGAATGGTGA
*
38085912 GATAAGGCCGAATGGCCAATGTGATAAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 GATAAGGCCGAATGGCCAATGTGATAAATCTGAACATGCATATATGAGATAAGGCCGAATGGCCA
* * * *
38085977 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGA-
66 ATGTGATGAATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
38086040 A-GTGTATAAATGTGATAAG
130 ATGTGTAT--ATGTGATAAG
38086059 TCCCGAAGGG
Statistics
Matches: 133, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
157 6 0.05
158 2 0.02
159 125 0.94
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (159 bp):
GATAAGGCCGAATGGCCAATGTGATAAATCTGAACATGCATATATGAGATAAGGCCGAATGGCCA
ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGTGTATATGTGATAAGGCCGAATGGTGA
Found at i:38088258 original size:27 final size:27
Alignment explanation
Indices: 38088227--38088404 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
38088217 TAAATTGTAC
38088227 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
38088254 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
38088280 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
38088308 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
38088336 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
38088363 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
38088390 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
38088405 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:38088341 original size:82 final size:81
Alignment explanation
Indices: 38088228--38088383 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
38088218 AAATTGTACA
* *
38088228 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
38088292 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
38088309 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
38088374 TGCGAGTTGA
65 TGCGAATTGA
38088384 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:38088395 original size:82 final size:81
Alignment explanation
Indices: 38088224--38088404 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
38088214 GATTAAATTG
* *
38088224 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
38088289 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
38088305 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
38088369 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
38088387 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
38088405 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:38093036 original size:15 final size:15
Alignment explanation
Indices: 38093016--38093045 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
38093006 TATTATTATC
*
38093016 TTTCCTAACTTAGAG
1 TTTCCTAAATTAGAG
38093031 TTTCCTAAATTAGAG
1 TTTCCTAAATTAGAG
38093046 ACATAGTTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (15 bp):
TTTCCTAAATTAGAG
Found at i:38099739 original size:30 final size:30
Alignment explanation
Indices: 38099705--38099765 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
38099695 TCCTTAACTC
38099705 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
38099735 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
38099765 A
1 A
38099766 GGCTTGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:38101418 original size:30 final size:30
Alignment explanation
Indices: 38101382--38101442 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
38101372 TTCCTGAGCC
38101382 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
38101412 TAGGGGCAAAATTGTAATTTTTCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
38101442 T
1 T
38101443 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:38102215 original size:30 final size:30
Alignment explanation
Indices: 38102181--38102241 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
38102171 TCCTTAACTC
38102181 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
38102211 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
38102241 A
1 A
38102242 GGCTCAAGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:38104467 original size:42 final size:42
Alignment explanation
Indices: 38104411--38104541 Score: 174
Period size: 44 Copynumber: 3.0 Consensus size: 42
38104401 TCTTATTTGT
* * *
38104411 AATCAAATATCGATGCCACTGTCCCAAACAAGGTCTTACACGA
1 AATCAAATA-CGATGCCAATGTCCTAAACATGGTCTTACACGA
38104454 AATCAAATACGATGCCAATGTCCTAAACATGGTCTTACACGTA
1 AATCAAATACGATGCCAATGTCCTAAACATGGTCTTACACG-A
* *
38104497 AATCATAAGT-CGATGCCAATGTCCTAGACGTGGTCTTACACGA
1 AATCA-AA-TACGATGCCAATGTCCTAAACATGGTCTTACACGA
38104540 AA
1 AA
38104542 ACACATATCG
Statistics
Matches: 80, Mismatches: 5, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
42 29 0.36
43 18 0.22
44 32 0.40
45 1 0.01
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (42 bp):
AATCAAATACGATGCCAATGTCCTAAACATGGTCTTACACGA
Found at i:38120328 original size:27 final size:27
Alignment explanation
Indices: 38120273--38120330 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
38120263 TTTTTGTAAA
* **
38120273 ATACAAATTATTTTTTAATATTAAAAT
1 ATACAAATTATTATTTAATAAAAAAAT
38120300 ATACAAATTATTATTTAA-AAAAAACAT
1 ATACAAATTATTATTTAATAAAAAA-AT
38120327 ATAC
1 ATAC
38120331 TACTAAAACT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 4 0.15
27 23 0.85
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (27 bp):
ATACAAATTATTATTTAATAAAAAAAT
Found at i:38120451 original size:23 final size:24
Alignment explanation
Indices: 38120411--38120456 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
38120401 CAAAAGTTAT
*
38120411 ATCTAAAAATTAACAATA-ATCTA
1 ATCTAAAAATTAAAAATATATCTA
38120434 ATCT-AAAATATAAAAATATATCT
1 ATCTAAAAAT-TAAAAATATATCT
38120457 TTTTTTTAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 5 0.25
23 11 0.55
24 4 0.20
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.33
Consensus pattern (24 bp):
ATCTAAAAATTAAAAATATATCTA
Found at i:38143157 original size:30 final size:30
Alignment explanation
Indices: 38143123--38143183 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
38143113 TTTGGCCGTA
38143123 AAGGCAAGTTGAGCCCGAGATTCATTGGTC
1 AAGGCAAGTTGAGCCCGAGATTCATTGGTC
38143153 AAGGCAAGTTGAGCCCGAGATTCATTGGTC
1 AAGGCAAGTTGAGCCCGAGATTCATTGGTC
38143183 A
1 A
38143184 GATTTAGTCG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.23
Consensus pattern (30 bp):
AAGGCAAGTTGAGCCCGAGATTCATTGGTC
Found at i:38144806 original size:27 final size:27
Alignment explanation
Indices: 38144775--38144952 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
38144765 TAAATTGTAC
38144775 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
38144802 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
38144828 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* *
38144856 GGCACTAAGTGTGCGAGTTTGACAATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
38144884 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
38144911 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
38144938 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
38144953 GACTCAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:38144893 original size:82 final size:81
Alignment explanation
Indices: 38144776--38144931 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
38144766 AAATTGTACA
* * *
38144776 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACAATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
38144840 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
38144857 GCACTAAGTGTGCGAGTTTGACAATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACAATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
38144922 TGCGAGTTGA
65 TGCGAATTGA
38144932 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACAATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:38144943 original size:82 final size:81
Alignment explanation
Indices: 38144772--38144952 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
38144762 GATTAAATTG
* * *
38144772 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACAATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
38144837 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
38144853 TGCGGCACTAAGTGTGCGAGTTTGACAATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACAATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
38144917 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
38144935 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
38144953 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACAATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:38156374 original size:46 final size:45
Alignment explanation
Indices: 38156307--38156481 Score: 190
Period size: 46 Copynumber: 3.8 Consensus size: 45
38156297 TGTAACCCGC
*
38156307 CCATAAGTGAACTTGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
* * *
38156353 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGCAT
* *** * * *
38156399 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTTGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
*
38156446 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
38156482 ATGCCCAAAT
Statistics
Matches: 105, Mismatches: 19, Indels: 10
0.78 0.14 0.07
Matches are distributed among these distances:
45 1 0.01
46 69 0.66
47 33 0.31
48 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGCAT
Found at i:38156428 original size:93 final size:93
Alignment explanation
Indices: 38156315--38156486 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
38156305 GCCCATAAGT
* * *
38156315 GAACTTGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
38156380 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
38156408 GAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
38156473 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
38156487 CAAATATCCT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:38156501 original size:46 final size:44
Alignment explanation
Indices: 38156312--38156501 Score: 109
Period size: 46 Copynumber: 4.1 Consensus size: 44
38156302 CCCGCCCATA
* * ** ** **
38156312 AGTGAACTTGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCC-T
* *
38156357 AAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---A-ATC-CT
* * * *
38156407 --CGAACTCGGACTCAACTCAACGAGTTTGGACATTCGC--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAAATCC-T
38156450 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AA-ATCCT
38156497 AGTGA
1 AGTGA
38156502 CATGTCACTT
Statistics
Matches: 111, Mismatches: 18, Indels: 30
0.70 0.11 0.19
Matches are distributed among these distances:
42 1 0.01
43 4 0.04
44 4 0.04
46 63 0.57
47 27 0.24
48 4 0.04
49 3 0.03
50 4 0.04
51 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCCT
Found at i:38160389 original size:34 final size:34
Alignment explanation
Indices: 38160319--38160399 Score: 101
Period size: 34 Copynumber: 2.4 Consensus size: 34
38160309 TTAGTCCCTC
* *
38160319 TTTCAATAGCAGTAGTAGTCTGGGCCTGAGCCCA
1 TTTCAATAACAGTAGTAGTCTGGGCCTGAGCACA
* * *
38160353 TTTCAATAACAGTGGTAGTCTGGGCCTTAGTACA
1 TTTCAATAACAGTAGTAGTCTGGGCCTGAGCACA
*
38160387 TTTCAGT-ACAGTA
1 TTTCAATAACAGTA
38160400 TGCACACAAA
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
33 5 0.12
34 35 0.88
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (34 bp):
TTTCAATAACAGTAGTAGTCTGGGCCTGAGCACA
Found at i:38163577 original size:20 final size:20
Alignment explanation
Indices: 38163552--38163605 Score: 108
Period size: 20 Copynumber: 2.7 Consensus size: 20
38163542 AACAGGGGTT
38163552 ACACGCCCGTGTGGTTTGGG
1 ACACGCCCGTGTGGTTTGGG
38163572 ACACGCCCGTGTGGTTTGGG
1 ACACGCCCGTGTGGTTTGGG
38163592 ACACGCCCGTGTGG
1 ACACGCCCGTGTGG
38163606 GCAGGCCATG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.11, C:0.28, G:0.39, T:0.22
Consensus pattern (20 bp):
ACACGCCCGTGTGGTTTGGG
Found at i:38166877 original size:40 final size:40
Alignment explanation
Indices: 38166822--38167215 Score: 626
Period size: 40 Copynumber: 9.8 Consensus size: 40
38166812 GAGCATTTGA
* *
38166822 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGTGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
38166862 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* *
38166902 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGTGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
38166942 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
38166982 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
38167022 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* *
38167062 ATATATCCGGGCTAAGACCCGCAGGCCTTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* *
38167102 ATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
38167142 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* ** * *
38167182 CTATGCCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGC
38167216 TTGTGGTTAT
Statistics
Matches: 325, Mismatches: 29, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 325 1.00
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
Found at i:38167231 original size:80 final size:80
Alignment explanation
Indices: 38166822--38167215 Score: 689
Period size: 80 Copynumber: 4.9 Consensus size: 80
38166812 GAGCATTTGA
*
38166822 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGTGAGTTGATATATCCGGGCTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
38166887 CATTTGTGCAAGTTG
66 CATTTGTGCAAGTTG
*
38166902 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGTGAGTTGATATATCCGGGCTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
38166967 CATTTGTGCAAGTTG
66 CATTTGTGCAAGTTG
38166982 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
38167047 CATTTGTGCAAGTTG
66 CATTTGTGCAAGTTG
*
38167062 ATATATCCGGGCTAAGACCCGCAGGCCTTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
*
38167127 CAATTGTGCAAGTTG
66 CATTTGTGCAAGTTG
* * * ** *
38167142 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATGCCCGGGTTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
*
38167207 CAATTGTGC
66 CATTTGTGC
38167216 TTGTGGTTAT
Statistics
Matches: 304, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
80 304 1.00
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (80 bp):
ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
CATTTGTGCAAGTTG
Found at i:38169284 original size:9 final size:9
Alignment explanation
Indices: 38169270--38169294 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
38169260 TGGATTATTT
38169270 TGAATGAAA
1 TGAATGAAA
38169279 TGAATGAAA
1 TGAATGAAA
38169288 TGAATGA
1 TGAATGA
38169295 TTGAATGGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24
Consensus pattern (9 bp):
TGAATGAAA
Found at i:38174415 original size:43 final size:42
Alignment explanation
Indices: 38174304--38174416 Score: 104
Period size: 43 Copynumber: 2.7 Consensus size: 42
38174294 TGTGTTTTCG
* * * * *
38174304 TGTAAGACCACATCTAGGACGTTGGCATCATATTTGATTTCG
1 TGTAAGACCACGTCTGGGAAGTTGGCATCATATTTGATTACA
* * *
38174346 TGTAAGACC-CTGTCTGGGACAG-TGGCATAGATGTTTGGTTACA
1 TGTAAGACCAC-GTCTGGGA-AGTTGGCAT-CATATTTGATTACA
*
38174389 TGTAAGACCACGTCTGGGATGTTGGCAT
1 TGTAAGACCACGTCTGGGAAGTTGGCAT
38174417 TGTATGAGCT
Statistics
Matches: 57, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
41 1 0.02
42 22 0.39
43 33 0.58
44 1 0.02
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGAAGTTGGCATCATATTTGATTACA
Found at i:38175005 original size:22 final size:23
Alignment explanation
Indices: 38174954--38175005 Score: 54
Period size: 22 Copynumber: 2.3 Consensus size: 23
38174944 TTTAGCCATG
*
38174954 TGATATGGCTTGGTTTTGGTTGA
1 TGATATGGCTTGATTTTGGTTGA
**
38174977 TCTTATGG-TTGATTTTGGTAT-A
1 TGATATGGCTTGATTTTGGT-TGA
38174999 TGATATG
1 TGATATG
38175006 TGATGCAAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 3
0.74 0.16 0.10
Matches are distributed among these distances:
22 16 0.70
23 7 0.30
ACGTcount: A:0.17, C:0.04, G:0.29, T:0.50
Consensus pattern (23 bp):
TGATATGGCTTGATTTTGGTTGA
Found at i:38182481 original size:8 final size:8
Alignment explanation
Indices: 38182468--38182492 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
38182458 CAGCACCCGG
38182468 ATCACATA
1 ATCACATA
38182476 ATCACATA
1 ATCACATA
38182484 ATCACATA
1 ATCACATA
38182492 A
1 A
38182493 CTCATAACTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (8 bp):
ATCACATA
Found at i:38183960 original size:20 final size:20
Alignment explanation
Indices: 38183935--38183982 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
38183925 TTGCACATTC
38183935 GTGCCCCTATTTGTACTTCG
1 GTGCCCCTATTTGTACTTCG
38183955 GTGCCCCTATTTGTACTTCG
1 GTGCCCCTATTTGTACTTCG
*
38183975 GTACCCCT
1 GTGCCCCT
38183983 GAATTGCATA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.10, C:0.33, G:0.19, T:0.38
Consensus pattern (20 bp):
GTGCCCCTATTTGTACTTCG
Found at i:38184000 original size:41 final size:41
Alignment explanation
Indices: 38183955--38184153 Score: 218
Period size: 41 Copynumber: 4.7 Consensus size: 41
38183945 TTGTACTTCG
* * *
38183955 GTGCCCCTATTTGTACTTCGGTACCCCTGAATTGCATATAT
1 GTGCCCCTGTTTGTACTTCGGTACCCCTGAATTGCACATAC
* ** *
38183996 GTGCCCCTGTTTTTACTTTAGTACCCTTGAATTTGAATTGCACATAC
1 GTGCCCCTGTTTGTACTTCGGTACCC------CTGAATTGCACATAC
* * *
38184043 GTACACTTGTTTGTACTTCGGTACCCCTGAATTGCACATAC
1 GTGCCCCTGTTTGTACTTCGGTACCCCTGAATTGCACATAC
* * * *
38184084 GTGCCCCTGTTGGTACTTTGGTACCCCTGAATTGCACAGAT
1 GTGCCCCTGTTTGTACTTCGGTACCCCTGAATTGCACATAC
38184125 GTGCCCCTGTTTGTACTTCGGTACCCCTG
1 GTGCCCCTGTTTGTACTTCGGTACCCCTG
38184154 GATGTACTTT
Statistics
Matches: 129, Mismatches: 23, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
41 97 0.75
47 32 0.25
ACGTcount: A:0.18, C:0.27, G:0.19, T:0.36
Consensus pattern (41 bp):
GTGCCCCTGTTTGTACTTCGGTACCCCTGAATTGCACATAC
Found at i:38184153 original size:20 final size:20
Alignment explanation
Indices: 38184050--38184153 Score: 57
Period size: 20 Copynumber: 5.1 Consensus size: 20
38184040 TACGTACACT
38184050 TGTTTGTACTTCGGTACCCC
1 TGTTTGTACTTCGGTACCCC
* * * *
38184070 TGAATTGCACATAC-GTGCCCC
1 TG-TTTGTAC-TTCGGTACCCC
* *
38184091 TGTTGGTACTTTGGTACCCC
1 TGTTTGTACTTCGGTACCCC
* * **** *
38184111 TGAATTGCACAGATGTGCCCC
1 TG-TTTGTACTTCGGTACCCC
38184132 TGTTTGTACTTCGGTACCCC
1 TGTTTGTACTTCGGTACCCC
38184152 TG
1 TG
38184154 GATGTACTTT
Statistics
Matches: 55, Mismatches: 25, Indels: 8
0.62 0.28 0.09
Matches are distributed among these distances:
19 1 0.02
20 27 0.49
21 25 0.45
22 2 0.04
ACGTcount: A:0.15, C:0.29, G:0.22, T:0.34
Consensus pattern (20 bp):
TGTTTGTACTTCGGTACCCC
Found at i:38184786 original size:34 final size:34
Alignment explanation
Indices: 38184748--38184823 Score: 91
Period size: 34 Copynumber: 2.2 Consensus size: 34
38184738 AGTGACAGTC
* *
38184748 CAGTATCAAT-TAGGGCCATAGCCCATTACAGTAT
1 CAGTATCAATGT-GGGCCATAGCCCATCACAGTAA
* *
38184782 CAGTATCAGTGTGGGCCTTAGCCCATCACAGTAA
1 CAGTATCAATGTGGGCCATAGCCCATCACAGTAA
*
38184816 CAGCATCA
1 CAGTATCA
38184824 GTAATGCAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
34 35 0.97
35 1 0.03
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (34 bp):
CAGTATCAATGTGGGCCATAGCCCATCACAGTAA
Found at i:38184824 original size:34 final size:34
Alignment explanation
Indices: 38184760--38184825 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 34
38184750 GTATCAATTA
* * *
38184760 GGGCCATAGCCCATTACAGTATCAGTATCAGTGT
1 GGGCCATAGCCCATCACAGTAACAGCATCAGTGT
*
38184794 GGGCCTTAGCCCATCACAGTAACAGCATCAGT
1 GGGCCATAGCCCATCACAGTAACAGCATCAGT
38184826 AATGCAATCA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (34 bp):
GGGCCATAGCCCATCACAGTAACAGCATCAGTGT
Found at i:38186727 original size:42 final size:42
Alignment explanation
Indices: 38186664--38186777 Score: 149
Period size: 42 Copynumber: 2.7 Consensus size: 42
38186654 CTTCATTTTC
** * *
38186664 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACAT-A
* *
38186707 T-GATGCCTTAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
*
38186748 TCGATGCCATAGCCTAGCTATGGTCTTACA
1 TCGATGCCATAGCCCAGCTATGGTCTTACA
38186778 TGAATCACAT
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
41 2 0.03
42 59 0.95
43 1 0.02
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.32
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
Found at i:38186933 original size:31 final size:31
Alignment explanation
Indices: 38186897--38187076 Score: 236
Period size: 31 Copynumber: 5.8 Consensus size: 31
38186887 CTTGTCATTT
*** * *
38186897 GTAGCCGAAGCTACCACAAGTCACTAATTAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * *
38186928 GTAGCCGGAGCTACCATTTTTCATTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
38186959 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
38186990 GTAGCCGGAA-CTACCACTTTTCACTAATCAG
1 GTAGCC-GAAGCTACCACTTTTCACTGATCAG
*
38187021 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
38187052 GTAGCTGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
38187077 TGTCATTTGT
Statistics
Matches: 132, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
30 3 0.02
31 127 0.96
32 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:38187162 original size:50 final size:52
Alignment explanation
Indices: 38187052--38187178 Score: 179
Period size: 50 Copynumber: 2.5 Consensus size: 52
38187042 CACTGATCAG
* * * *
38187052 GTAGCTGAAGCTACCACTTTTCAC-TTGTCATTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTGACATTTGTCATTGATCAGATAAGT
*
38187103 GTAGCCGAAGCTATCACTTATCACTTTGAC-TTT-TCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTGACATTTGTCATTGATCAGATAAGT
*
38187153 GTAGTCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
38187179 GTTGCCATGG
Statistics
Matches: 69, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
50 41 0.59
51 24 0.35
52 4 0.06
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (52 bp):
GTAGCCGAAGCTATCACTTATCACTTTGACATTTGTCATTGATCAGATAAGT
Found at i:38193389 original size:40 final size:40
Alignment explanation
Indices: 38193306--38193608 Score: 378
Period size: 40 Copynumber: 7.6 Consensus size: 40
38193296 TTGAATGTTG
* * * * * *
38193306 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
38193346 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
*
38193386 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
38193426 TCCGGGTTAAGTCCCGAAGGCATTCGTGTGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
38193466 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
38193506 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
38193546 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
38193585 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
38193609 TGAACGAGGA
Statistics
Matches: 237, Mismatches: 23, Indels: 7
0.89 0.09 0.03
Matches are distributed among these distances:
39 35 0.15
40 194 0.82
41 8 0.03
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:38200937 original size:40 final size:40
Alignment explanation
Indices: 38200854--38201156 Score: 378
Period size: 40 Copynumber: 7.6 Consensus size: 40
38200844 TTGAATGCTG
* * * * * *
38200854 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
38200894 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
*
38200934 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
38200974 TCCGGGTTAAGTCCCGAAGGCATTCGTGTGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
38201014 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
38201054 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
38201094 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
38201133 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
38201157 TGAACGAGGA
Statistics
Matches: 237, Mismatches: 23, Indels: 7
0.89 0.09 0.03
Matches are distributed among these distances:
39 35 0.15
40 194 0.82
41 8 0.03
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:38206126 original size:34 final size:34
Alignment explanation
Indices: 38206088--38206164 Score: 111
Period size: 34 Copynumber: 2.3 Consensus size: 34
38206078 GTGACAGTCT
* *
38206088 AGTATCAGT-TAGGGCCATAGCCCATTACAGTATC
1 AGTATCAGTGT-GGGCCATAGCCCATCACAGTAAC
*
38206122 AGTATCAGTGTGGGCCTTAGCCCATCACAGTAAC
1 AGTATCAGTGTGGGCCATAGCCCATCACAGTAAC
38206156 AGTATCAGT
1 AGTATCAGT
38206165 AAGGCAATCA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
34 38 0.97
35 1 0.03
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (34 bp):
AGTATCAGTGTGGGCCATAGCCCATCACAGTAAC
Found at i:38209956 original size:6 final size:6
Alignment explanation
Indices: 38209926--38210093 Score: 130
Period size: 6 Copynumber: 27.3 Consensus size: 6
38209916 AAGAAACATT
* * *
38209926 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * * *
38209975 ATCAAA ATTAGA ATCAGA ATCAAA ATTAGGTA A-CAGA ATCAGA ATCAGT
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
* *
38210024 ATCAGGTA A-CAGA ATCAGA ATCAGA ACCAGA ATCAGA ATCAGT ATCAGGTA
1 ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
38210075 A-CAGA ATCAGA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA AT
38210094 GTGAATGCAA
Statistics
Matches: 128, Mismatches: 20, Indels: 28
0.73 0.11 0.16
Matches are distributed among these distances:
5 8 0.06
6 104 0.81
7 11 0.09
8 5 0.04
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:38209981 original size:37 final size:37
Alignment explanation
Indices: 38209935--38210093 Score: 152
Period size: 37 Copynumber: 4.5 Consensus size: 37
38209925 TATCAGAACT
* *
38209935 AGAATCAAAATGAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAGAATCAGGTAAC
* * *
38209972 AGAATCAAAATTAGAATCAGAATCAAAATTAGGTAAC
1 AGAATCAAAATCAGAATCAGAATCAGAATCAGGTAAC
* * *
38210009 AGAATCAGAATCAGTATCAG-GT---AA-CA-G-AATC
1 AGAATCAAAATCAGAATCAGAATCAGAATCAGGTAA-C
* * *
38210040 AGAATCAGAACCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGAATCAGAATCAGGTAAC
*
38210077 AGAATCAGAATCAGAAT
1 AGAATCAAAATCAGAAT
38210094 GTGAATGCAA
Statistics
Matches: 100, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
30 2 0.02
31 20 0.20
32 2 0.02
33 2 0.02
35 1 0.01
36 3 0.03
37 68 0.68
38 2 0.02
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.18
Consensus pattern (37 bp):
AGAATCAAAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:38210055 original size:43 final size:43
Alignment explanation
Indices: 38210008--38210092 Score: 170
Period size: 43 Copynumber: 2.0 Consensus size: 43
38209998 AATTAGGTAA
38210008 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAAC
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAAC
38210051 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAA
38210093 TGTGAATGCA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.47, C:0.18, G:0.19, T:0.16
Consensus pattern (43 bp):
CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAAC
Found at i:38210090 original size:25 final size:25
Alignment explanation
Indices: 38209984--38210090 Score: 129
Period size: 25 Copynumber: 4.6 Consensus size: 25
38209974 AATCAAAATT
** *
38209984 AGAATCAGAATCAAAATTAGGTAAC
1 AGAATCAGAATCAGTATCAGGTAAC
38210009 AGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGTATCAGGTAAC
*
38210034 AGAATCAGAATCAG----A---ACC
1 AGAATCAGAATCAGTATCAGGTAAC
38210052 AGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGTATCAGGTAAC
38210077 AGAATCAGAATCAG
1 AGAATCAGAATCAG
38210091 AATGTGAATG
Statistics
Matches: 70, Mismatches: 5, Indels: 14
0.79 0.06 0.16
Matches are distributed among these distances:
18 16 0.23
21 1 0.01
22 1 0.01
25 52 0.74
ACGTcount: A:0.48, C:0.16, G:0.19, T:0.18
Consensus pattern (25 bp):
AGAATCAGAATCAGTATCAGGTAAC
Found at i:38210291 original size:27 final size:27
Alignment explanation
Indices: 38210212--38210276 Score: 130
Period size: 27 Copynumber: 2.4 Consensus size: 27
38210202 GCGAGGCTGC
38210212 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGTCACCAGATA
38210239 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGTCACCAGATA
38210266 CAGATATTGTG
1 CAGATATTGTG
38210277 GCTAGGCCAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (27 bp):
CAGATATTGTGACGAAGTCACCAGATA
Found at i:38210351 original size:67 final size:67
Alignment explanation
Indices: 38210239--38210441 Score: 336
Period size: 67 Copynumber: 3.0 Consensus size: 67
38210229 TCACCAGATA
* * *
38210239 CAGATATTGTGACGAAGTCACCAGATACAGATAT-TGTGGCTAGGCCACCAGATTGCAGCGAGGT
1 CAGATATTGTGACGAAGTCACCAGA-ATAGATATATGTGGCGAGGCCACCAGATTGCAGCGAGGC
38210303 TGC
65 TGC
* * *
38210306 CAGATATTGTGACAAAGTCACCAGAATAGATATATATGGCGAGGCCACCAGATTGCAGCGAGACT
1 CAGATATTGTGACGAAGTCACCAGAATAGATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCT
38210371 GC
66 GC
38210373 CAGATATTGTGACGAAGTCACCAGAATAGATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCT
1 CAGATATTGTGACGAAGTCACCAGAATAGATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCT
38210438 GC
66 GC
38210440 CA
1 CA
38210442 AAACGCTTCC
Statistics
Matches: 126, Mismatches: 9, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
66 7 0.06
67 119 0.94
ACGTcount: A:0.31, C:0.21, G:0.28, T:0.20
Consensus pattern (67 bp):
CAGATATTGTGACGAAGTCACCAGAATAGATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCT
GC
Found at i:38210421 original size:27 final size:26
Alignment explanation
Indices: 38210374--38210424 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
38210364 CGAGACTGCC
*
38210374 AGATATTGTGACGAAGTCACCAGAAT
1 AGATATTGTGACGAAGCCACCAGAAT
* *
38210400 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
38210425 TTGCAGCGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.20
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAT
Found at i:38210699 original size:27 final size:27
Alignment explanation
Indices: 38210669--38210813 Score: 186
Period size: 27 Copynumber: 5.4 Consensus size: 27
38210659 GGGGTAAAAT
* *
38210669 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
38210696 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
38210723 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
38210750 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
*
38210777 GGT-ATTTCTACCTTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
38210804 GGTAATTTTA
1 GGTAATTTTA
38210814 TAAATCTAGG
Statistics
Matches: 107, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
26 3 0.03
27 100 0.93
28 4 0.04
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:38210834 original size:81 final size:81
Alignment explanation
Indices: 38210658--38210839 Score: 181
Period size: 81 Copynumber: 2.2 Consensus size: 81
38210648 TTAACACCCT
* *
38210658 AGGGGTAAAATGGTAATTT-TACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTT
1 AGGGGTAAAACGGT-ATTTCTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAAGGGTATTT
***
38210722 CAGTAATTCTACCCTAC
65 CAGTAATTCTAAAATAC
*** * * * *
38210739 AGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCTTACAAGGGTATTTC
1 AGGGGTAAAACGGTATTTCTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAAGGGTATTTC
* *
38210804 GGTAATTTTATAAAT-C
66 AGTAATTCTA-AAATAC
*
38210820 TA-GGGTAAAACGGTAATTCT
1 -AGGGGTAAAACGGTATTTCT
38210840 GTAAATCAGG
Statistics
Matches: 80, Mismatches: 18, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
80 4 0.05
81 74 0.93
82 2 0.03
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.34
Consensus pattern (81 bp):
AGGGGTAAAACGGTATTTCTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAAGGGTATTTC
AGTAATTCTAAAATAC
Found at i:38210879 original size:27 final size:26
Alignment explanation
Indices: 38210849--38211243 Score: 360
Period size: 27 Copynumber: 14.7 Consensus size: 26
38210839 TGTAAATCAG
* * *
38210849 GGGTAATTTGGTAATTTTACAAGTCGA
1 GGGTATTTTGGTAATTTTACAA-ACTA
*** ***
38210876 GGGTATTTCAATAATTTTACAGGTTGA
1 GGGTATTTTGGTAATTTTACAAACT-A
* *
38210903 GGGTATTTTAGTAATTTCACAAA-TCA
1 GGGTATTTTGGTAATTTTACAAACT-A
38210929 GCGGTATTTTGGTAATTTTACAAACTA
1 G-GGTATTTTGGTAATTTTACAAACTA
*
38210956 GGGGTATTTTGATAATTTTACAAACTA
1 -GGGTATTTTGGTAATTTTACAAACTA
38210983 GGGGTATTTTGGTAATTTTACAAACTA
1 -GGGTATTTTGGTAATTTTACAAACTA
* *
38211010 GGGGTATTTTGGTAATTTTATAAACAAA
1 -GGGTATTTTGGTAATTTTACAAAC-TA
*
38211038 GGGTATTTTGGTAATTTTACAAACCA
1 GGGTATTTTGGTAATTTTACAAACTA
* * *
38211064 GGGGTATTTTGGTGATTTTATAAACCAA
1 -GGGTATTTTGGTAATTTTACAAA-CTA
* * *
38211092 GGGTATTCTAGTAATTTTACAAACCA
1 GGGTATTTTGGTAATTTTACAAACTA
* * *
38211118 GAGGTATTTTGGTGATTTTATAAACCAA
1 G-GGTATTTTGGTAATTTTACAAA-CTA
* *
38211146 GGGTATTCTAGTAATTTTACAAACTA
1 GGGTATTTTGGTAATTTTACAAACTA
** *
38211172 GGGGTATTTTGGTAATTTTGTAAACAAA
1 -GGGTATTTTGGTAATTTTACAAAC-TA
** *
38211200 GGGTATTTTACTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAA-CTA
38211227 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
38211244 GGTAAACTAA
Statistics
Matches: 305, Mismatches: 51, Indels: 24
0.80 0.13 0.06
Matches are distributed among these distances:
26 9 0.03
27 286 0.94
28 10 0.03
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAAACTA
Found at i:38211250 original size:27 final size:27
Alignment explanation
Indices: 38210902--38211243 Score: 400
Period size: 27 Copynumber: 12.7 Consensus size: 27
38210892 TTACAGGTTG
* * *
38210902 AGGGTATTTTAGTAATTTCACAAATC-
1 AGGGTATTTTGGTAATTTTACAAACCA
*
38210928 AGCGGTATTTTGGTAATTTTACAAACTA
1 AG-GGTATTTTGGTAATTTTACAAACCA
* * *
38210956 GGGGTATTTTGATAATTTTACAAACTA
1 AGGGTATTTTGGTAATTTTACAAACCA
* *
38210983 GGGGTATTTTGGTAATTTTACAAACTA
1 AGGGTATTTTGGTAATTTTACAAACCA
* * *
38211010 GGGGTATTTTGGTAATTTTATAAACAA
1 AGGGTATTTTGGTAATTTTACAAACCA
38211037 AGGGTATTTTGGTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* * *
38211064 GGGGTATTTTGGTGATTTTATAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* *
38211091 AGGGTATTCTAGTAATTTTACAAACC-
1 AGGGTATTTTGGTAATTTTACAAACCA
* *
38211117 AGAGGTATTTTGGTGATTTTATAAACCA
1 AG-GGTATTTTGGTAATTTTACAAACCA
* * *
38211145 AGGGTATTCTAGTAATTTTACAAACTA
1 AGGGTATTTTGGTAATTTTACAAACCA
* ** *
38211172 GGGGTATTTTGGTAATTTTGTAAACAA
1 AGGGTATTTTGGTAATTTTACAAACCA
**
38211199 AGGGTATTTTACTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
38211226 AGGGTATTTTGGTAATTT
1 AGGGTATTTTGGTAATTT
38211244 GGTAAACTAA
Statistics
Matches: 269, Mismatches: 43, Indels: 7
0.84 0.13 0.02
Matches are distributed among these distances:
26 4 0.01
27 262 0.97
28 3 0.01
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTACAAACCA
Found at i:38211250 original size:54 final size:54
Alignment explanation
Indices: 38210931--38211243 Score: 446
Period size: 54 Copynumber: 5.8 Consensus size: 54
38210921 ACAAATCAGC
* * * * * *
38210931 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACTAGG
1 GGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAAG
* *
38210985 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACAAAG
1 GGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAAG
* * *
38211039 GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAAG
1 GGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAAG
* * * *
38211093 GGTATTCTAGTAATTTTACAAACCAGAGGTATTTTGGTGATTTTATAAACCAAG
1 GGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAAG
* * *
38211147 GGTATTCTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACAAAG
1 GGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAAG
* *
38211201 GGTATTTTACTAATTTTACAAACCAAGGGTATTTTGGTAATTT
1 GGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
38211244 GGTAAACTAA
Statistics
Matches: 240, Mismatches: 19, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 240 1.00
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (54 bp):
GGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAAG
Found at i:38211252 original size:81 final size:81
Alignment explanation
Indices: 38210847--38211243 Score: 415
Period size: 81 Copynumber: 4.9 Consensus size: 81
38210837 TCTGTAAATC
* * * * * *****
38210847 AGGGGTAATTTGGTAATTTTACAAGTC-GAGGGTATTTCAATAATTTTACAGGTTGAGGGTATTT
1 AGGGGTATTTTGGTAATTTTACAA-ACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTT
* *
38210911 TAGTAATTTCACAAA-T
65 TGGTAATTTTACAAACT
* * * * *
38210927 CAGCGGTATTTTGGTAATTTTACAAACTAGGGGTATTTT-GATAATTTTACAAACTAGGGGTATT
1 -AGGGGTATTTTGGTAATTTTACAAACAAAGGGTATTTTAG-TAATTTTACAAACCAAGGGTATT
38210991 TTGGTAATTTTACAAACT
64 TTGGTAATTTTACAAACT
* * *
38211009 AGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTT
* * *
38211074 GGTGATTTTATAAACC
66 GGTAATTTTACAAACT
* * * * * * * *
38211090 AAGGGTATTCTAGTAATTTTACAAAC-CAGAGGTATTTTGGTGATTTTATAAACCAAGGGTATTC
1 AGGGGTATTTTGGTAATTTTACAAACAAAG-GGTATTTTAGTAATTTTACAAACCAAGGGTATTT
*
38211154 TAGTAATTTTACAAACT
65 TGGTAATTTTACAAACT
** *
38211171 AGGGGTATTTTGGTAATTTTGTAAACAAAGGGTATTTTACTAATTTTACAAACCAAGGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTT
38211236 GGTAATTT
66 GGTAATTT
38211244 GGTAAACTAA
Statistics
Matches: 263, Mismatches: 47, Indels: 12
0.82 0.15 0.04
Matches are distributed among these distances:
80 3 0.01
81 256 0.97
82 4 0.02
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTT
GGTAATTTTACAAACT
Found at i:38215722 original size:34 final size:34
Alignment explanation
Indices: 38215684--38215750 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
38215674 TCCTTGCATG
38215684 ATTAAATACTTATATACAACCTCCTTACAGACCT
1 ATTAAATACTTATATACAACCTCCTTACAGACCT
*
38215718 ATTAAATACTTATATACAACCTCCTTACGGACC
1 ATTAAATACTTATATACAACCTCCTTACAGACC
38215751 CATACTCAAG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.37, C:0.27, G:0.04, T:0.31
Consensus pattern (34 bp):
ATTAAATACTTATATACAACCTCCTTACAGACCT
Found at i:38217795 original size:40 final size:40
Alignment explanation
Indices: 38217686--38217865 Score: 172
Period size: 40 Copynumber: 4.5 Consensus size: 40
38217676 CCCAGCCAAG
* * * *
38217686 TGCCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AA
1 TGCCTTCGGGACTTAGCCCGGATATA-ATAACTCGCACAAA
* * * *
38217724 TGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAT
1 TGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAA
* * *
38217764 TGCCTTCGGGACTTATCCTGGATGTAATAACTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAA
* *
38217804 TGCCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAA
1 TGCCTTCGGGACTTAGCCCGGATA-TAATAACT--CGCACAAA
38217845 TGCCTTCGGGACTTAGCCCGG
1 TGCCTTCGGGACTTAGCCCGG
38217866 TTATCATCCA
Statistics
Matches: 118, Mismatches: 18, Indels: 9
0.81 0.12 0.06
Matches are distributed among these distances:
38 14 0.12
39 16 0.14
40 60 0.51
41 24 0.20
42 4 0.03
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAA
Found at i:38220303 original size:27 final size:27
Alignment explanation
Indices: 38220258--38220309 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
38220248 AGTAACAGTT
*
38220258 GGGCCTAGCCCATTAACAAAATCAGGC
1 GGGCCTAGCCCAATAACAAAATCAGGC
38220285 GGGCCTAAGCCCAAT-ACAAAATCAG
1 GGGCCT-AGCCCAATAACAAAATCAG
38220310 TATCAGATGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 16 0.70
28 7 0.30
ACGTcount: A:0.37, C:0.29, G:0.21, T:0.13
Consensus pattern (27 bp):
GGGCCTAGCCCAATAACAAAATCAGGC
Found at i:38220748 original size:27 final size:27
Alignment explanation
Indices: 38220718--38220775 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
38220708 GAACATAAGA
38220718 GCATAATC-GCCATTCTACCATACAGGG
1 GCATAA-CGGCCATTCTACCATACAGGG
* * * *
38220745 GCATTACGGTCATTTTACCTTACAGGG
1 GCATAACGGCCATTCTACCATACAGGG
38220772 GCAT
1 GCAT
38220776 TATGGTCATT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 1 0.04
27 25 0.96
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.28
Consensus pattern (27 bp):
GCATAACGGCCATTCTACCATACAGGG
Found at i:38220776 original size:27 final size:27
Alignment explanation
Indices: 38220728--38220786 Score: 91
Period size: 27 Copynumber: 2.2 Consensus size: 27
38220718 GCATAATCGC
*
38220728 CATTCTACCATACAGGGGCATTACGGT
1 CATTTTACCATACAGGGGCATTACGGT
* *
38220755 CATTTTACCTTACAGGGGCATTATGGT
1 CATTTTACCATACAGGGGCATTACGGT
38220782 CATTT
1 CATTT
38220787 ACTAAACTAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (27 bp):
CATTTTACCATACAGGGGCATTACGGT
Found at i:38223557 original size:24 final size:22
Alignment explanation
Indices: 38223500--38223561 Score: 56
Period size: 24 Copynumber: 2.7 Consensus size: 22
38223490 TGTGTTTAAG
38223500 TTATC-TAATTATAAATGTTATA
1 TTATCATAATTA-AAATGTTATA
*
38223522 TTAGTAATTAATTAAAATGTTAGTA
1 TTA-TCA-TAATTAAAATGTTA-TA
38223547 TATATCATAA-TAAAA
1 T-TATCATAATTAAAA
38223562 CATAAATAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
22 3 0.09
23 6 0.18
24 11 0.33
25 11 0.33
26 2 0.06
ACGTcount: A:0.47, C:0.03, G:0.06, T:0.44
Consensus pattern (22 bp):
TTATCATAATTAAAATGTTATA
Found at i:38231934 original size:41 final size:41
Alignment explanation
Indices: 38231877--38231961 Score: 161
Period size: 41 Copynumber: 2.1 Consensus size: 41
38231867 AGACTGAATG
*
38231877 AGATATAAACTTAAAGCTTAATGAGTCTATTTTCATATAAA
1 AGATATAAAATTAAAGCTTAATGAGTCTATTTTCATATAAA
38231918 AGATATAAAATTAAAGCTTAATGAGTCTATTTTCATATAAA
1 AGATATAAAATTAAAGCTTAATGAGTCTATTTTCATATAAA
38231959 AGA
1 AGA
38231962 AACAGAGCAA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.46, C:0.08, G:0.11, T:0.35
Consensus pattern (41 bp):
AGATATAAAATTAAAGCTTAATGAGTCTATTTTCATATAAA
Found at i:38240080 original size:79 final size:81
Alignment explanation
Indices: 38239967--38240149 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
38239957 TACTCGTTCA
* * *
38239967 AATGCCTTCGGGACATAGCCCGG-TTATAGCAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGCAACTCGCACAAATGCCTTC-AGATCTTAACCCGG
* *
38240030 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
* **
38240047 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCAGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGCAACTCGCACAAATGCCTTCAGATCTTAACCCGGA
*
38240110 TATAGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
38240126 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
38240150 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 2 0.02
79 59 0.66
80 28 0.31
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGCAACTCGCACAAATGCCTTCAGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:38240149 original size:40 final size:40
Alignment explanation
Indices: 38239946--38240149 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
38239936 CGGAATTTAA
** *
38239946 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
38239986 CCGGTTATAGCAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
38240026 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
38240065 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-AGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
38240105 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
38240145 CCGGA
1 CCGGA
38240150 CATCATTCGA
Statistics
Matches: 138, Mismatches: 19, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 1 0.01
39 32 0.23
40 94 0.68
41 11 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:38240491 original size:84 final size:84
Alignment explanation
Indices: 38240350--38240519 Score: 331
Period size: 84 Copynumber: 2.0 Consensus size: 84
38240340 GAAAACTTAC
38240350 CTCGGATGTGGTCGAACGATTTCGGCGGCTATTCGATAACTTTTTCCTTTCCCTTATCCAACTGT
1 CTCGGATGTGGTCGAACGATTTCGGCGGCTATTCGATAACTTTTTCCTTTCCCTTATCCAACTGT
38240415 GGTCCTCTAAGCTCTTGAG
66 GGTCCTCTAAGCTCTTGAG
*
38240434 CTCGGATGTGGTCGAACGATTTCGGCGGCTATTTGATAACTTTTTCCTTTCCCTTATCCAACTGT
1 CTCGGATGTGGTCGAACGATTTCGGCGGCTATTCGATAACTTTTTCCTTTCCCTTATCCAACTGT
38240499 GGTCCTCTAAGCTCTTGAG
66 GGTCCTCTAAGCTCTTGAG
38240518 CT
1 CT
38240520 TAGCCTAGTT
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
84 85 1.00
ACGTcount: A:0.16, C:0.26, G:0.21, T:0.36
Consensus pattern (84 bp):
CTCGGATGTGGTCGAACGATTTCGGCGGCTATTCGATAACTTTTTCCTTTCCCTTATCCAACTGT
GGTCCTCTAAGCTCTTGAG
Found at i:38249235 original size:36 final size:36
Alignment explanation
Indices: 38249194--38249266 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
38249184 GGGAGTGAAG
38249194 GTATGATTAATTGATTATTGTGCAGGGTTTTCTAGT
1 GTATGATTAATTGATTATTGTGCAGGGTTTTCTAGT
38249230 GTATGATTAATTGATTATTGTGCAGGGTTTTCTAGT
1 GTATGATTAATTGATTATTGTGCAGGGTTTTCTAGT
38249266 G
1 G
38249267 GATTAGCTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.22, C:0.05, G:0.26, T:0.47
Consensus pattern (36 bp):
GTATGATTAATTGATTATTGTGCAGGGTTTTCTAGT
Found at i:38261739 original size:21 final size:21
Alignment explanation
Indices: 38261715--38261763 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
38261705 TTACTCAAGG
*
38261715 GAAGTCGATTGATCCATCTCA
1 GAAGCCGATTGATCCATCTCA
38261736 GAAGCCGATTGATCCATCTCA
1 GAAGCCGATTGATCCATCTCA
38261757 GAAGCCG
1 GAAGCCG
38261764 GATTCATTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (21 bp):
GAAGCCGATTGATCCATCTCA
Found at i:38262911 original size:16 final size:18
Alignment explanation
Indices: 38262892--38262924 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
38262882 CATATGAATT
38262892 CCAAAAC-ATA-ATAGTA
1 CCAAAACGATAGATAGTA
38262908 CCAAAACGATAGATAGT
1 CCAAAACGATAGATAGT
38262925 GTGACAAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.52, C:0.18, G:0.12, T:0.18
Consensus pattern (18 bp):
CCAAAACGATAGATAGTA
Found at i:38263544 original size:43 final size:43
Alignment explanation
Indices: 38263489--38263627 Score: 224
Period size: 43 Copynumber: 3.2 Consensus size: 43
38263479 GCATTACGCT
* **
38263489 TGCTAGGCTCGAAGCCTGATATTAACTCATCGGTATTATAGCC
1 TGCTAGGCTCGAAGCCTGATATTAACTCACCGACATTATAGCC
*
38263532 TGCTAGGTTCGAAGCCTGATATTAACTCACCGACATTATAGCC
1 TGCTAGGCTCGAAGCCTGATATTAACTCACCGACATTATAGCC
* *
38263575 TACTAGGCTCGAAGCCCGATATTAACTCACCGACATTATAGCC
1 TGCTAGGCTCGAAGCCTGATATTAACTCACCGACATTATAGCC
38263618 TGCTAGGCTC
1 TGCTAGGCTC
38263628 AAAGGCCCGA
Statistics
Matches: 88, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 88 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (43 bp):
TGCTAGGCTCGAAGCCTGATATTAACTCACCGACATTATAGCC
Found at i:38266687 original size:41 final size:41
Alignment explanation
Indices: 38266642--38266728 Score: 113
Period size: 41 Copynumber: 2.1 Consensus size: 41
38266632 ATTAGTTTTG
* * *
38266642 GCTATATATGGCACTTAGTGTGTGAGGTTA-AGATAGCTTCA
1 GCTATAGAAGGCACTTAGTGTGTGAGATTATA-ATAGCTTCA
* *
38266683 GCTATGGAAGGCACTTAGTGTGTGAGATTATAATAGCTTCG
1 GCTATAGAAGGCACTTAGTGTGTGAGATTATAATAGCTTCA
38266724 GCTAT
1 GCTAT
38266729 GCGTTAGCAT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
41 39 0.98
42 1 0.03
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (41 bp):
GCTATAGAAGGCACTTAGTGTGTGAGATTATAATAGCTTCA
Done.