Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 132 of 316
Found at i:42189041 original size:112 final size:112
Alignment explanation
Indices: 42188904--42189125 Score: 417
Period size: 112 Copynumber: 2.0 Consensus size: 112
42188894 TACTATCGGC
*
42188904 CCATATTTTCAATTTATTTCACATTTTAACCACTCAATTTCCACATTATATAGTTTGGTCCAAAA
1 CCATATTTTCAATTTATTTCACATTTTAACCACTAAATTTCCACATTATATAGTTTGGTCCAAAA
*
42188969 TTGACATTTTTACTCAAAATCACTTTATAAAACTTGTTAATCTAAGA
66 TTGACATTTTTACTCAAAATCACTTTATAAAACTTGTTAACCTAAGA
*
42189016 CCATATTTTCAATTTATTTCACATTTTAACCACTAAATTTCCACCTTATATAGTTTGGTCCAAAA
1 CCATATTTTCAATTTATTTCACATTTTAACCACTAAATTTCCACATTATATAGTTTGGTCCAAAA
42189081 TTGACATTTTTACTCAAAATCACTTTATAAAACTTGTTAACCTAA
66 TTGACATTTTTACTCAAAATCACTTTATAAAACTTGTTAACCTAA
42189126 CAACAATGAT
Statistics
Matches: 107, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
112 107 1.00
ACGTcount: A:0.35, C:0.19, G:0.05, T:0.41
Consensus pattern (112 bp):
CCATATTTTCAATTTATTTCACATTTTAACCACTAAATTTCCACATTATATAGTTTGGTCCAAAA
TTGACATTTTTACTCAAAATCACTTTATAAAACTTGTTAACCTAAGA
Found at i:42202498 original size:79 final size:81
Alignment explanation
Indices: 42202396--42202579 Score: 213
Period size: 79 Copynumber: 2.3 Consensus size: 81
42202386 GCTCCTCGTT
* *
42202396 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCACACAAATGCCTTCGGGA-CTTAACC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCACACAAATGCCTTC-GGATCTTAACC
*
42202458 CGGAT-TTAGTAAC-TCGCA
63 CGGATATT-GTAACTTAGCA
* **
42202476 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCACACAAATGCCTTCGGATCTTAACCCGG
*
42202540 ATATTGTCACTTAGCA
66 ATATTGTAACTTAGCA
42202556 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
42202580 CATCATTCAA
Statistics
Matches: 91, Mismatches: 7, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
78 14 0.15
79 55 0.60
80 22 0.24
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCACACAAATGCCTTCGGATCTTAACCCGG
ATATTGTAACTTAGCA
Found at i:42202513 original size:39 final size:41
Alignment explanation
Indices: 42202396--42202579 Score: 190
Period size: 40 Copynumber: 4.6 Consensus size: 41
42202386 GCTCCTCGTT
* * *
42202396 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCACA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAATCTCGCA
* *
42202436 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAA-CTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
42202476 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
* * *
42202515 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAATC-TCGCA
42202556 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
42202580 CATCATTCAA
Statistics
Matches: 127, Mismatches: 8, Indels: 19
0.82 0.05 0.12
Matches are distributed among these distances:
38 3 0.02
39 48 0.38
40 65 0.51
41 11 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
Found at i:42210323 original size:39 final size:40
Alignment explanation
Indices: 42210278--42210493 Score: 160
Period size: 40 Copynumber: 5.5 Consensus size: 40
42210268 AAATCACGTA
* * **
42210278 CCTTCGGAATTTAA-CCGGATATAGCT-CCTCGTTCAAATG
1 CCTTCGGAACTTAACCCGGATATAG-TAACTCGCACAAATG
* *
42210317 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
1 CCTTCGGAACTTAACCCGGATATAGTAACTCGCACAAATG
* * *
42210357 CCTTCGG-GCTTAGCCCGGA-ATTAGTATC-CGCACAAATG
1 CCTTCGGAACTTAACCCGGATA-TAGTAACTCGCACAAATG
* * *
42210395 CCTTCGG-GCTTAGCCCGGA-ATTAGTATCTCGCACAAATG
1 CCTTCGGAACTTAACCCGGATA-TAGTAACTCGCACAAATG
* ** * * *
42210434 CCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-G
1 CCTTCGGAACTTAACCCGGATATAGTAAC-TCGCACAAATG
* *
42210474 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGAACTTAACCCGGA
42210494 CAACATTCAA
Statistics
Matches: 151, Mismatches: 19, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
38 38 0.25
39 46 0.30
40 58 0.38
41 9 0.06
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCTTCGGAACTTAACCCGGATATAGTAACTCGCACAAATG
Found at i:42210355 original size:40 final size:40
Alignment explanation
Indices: 42210311--42210493 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
42210301 GCTCCTCGTT
* *
42210311 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
42210351 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATC-CGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
42210389 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * *
42210428 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
42210469 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
42210494 CAACATTCAA
Statistics
Matches: 127, Mismatches: 9, Indels: 13
0.85 0.06 0.09
Matches are distributed among these distances:
38 40 0.31
39 34 0.27
40 42 0.33
41 11 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:42218659 original size:22 final size:22
Alignment explanation
Indices: 42218616--42218660 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
42218606 TCTAACTAAG
*
42218616 AAATAAAAATAAACACTTAAAA
1 AAATAAAAATAAACACTAAAAA
*
42218638 AAATAAAAACTAAAGA-TAAAAA
1 AAATAAAAA-TAAACACTAAAAA
42218660 A
1 A
42218661 TTCCCCCATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.76, C:0.07, G:0.02, T:0.16
Consensus pattern (22 bp):
AAATAAAAATAAACACTAAAAA
Found at i:42222088 original size:12 final size:12
Alignment explanation
Indices: 42222071--42222096 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
42222061 ATCAAACAAG
42222071 ATTCACATATAT
1 ATTCACATATAT
42222083 ATTCACATATAT
1 ATTCACATATAT
42222095 AT
1 AT
42222097 ATACTTATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.15, G:0.00, T:0.42
Consensus pattern (12 bp):
ATTCACATATAT
Found at i:42222867 original size:43 final size:43
Alignment explanation
Indices: 42222812--42222948 Score: 181
Period size: 43 Copynumber: 3.2 Consensus size: 43
42222802 ATATCATACA
*
42222812 ATGCCAACGTCCCAAACGTGGTCTTACATGTAATCATATATTG
1 ATGCCAACGTCCCAAACGTGGTCTTACATGTAATCACATATTG
* *
42222855 ATGCC-ACTGTCCCAGATA-G-GGTCTTACACGTAATCACATATCG
1 ATGCCAAC-GTCCCA-A-ACGTGGTCTTACATGTAATCACATATTG
* *
42222898 ATGCCAACGTCCTAGACGTGGTCTTACATGTAATCACATATTG
1 ATGCCAACGTCCCAAACGTGGTCTTACATGTAATCACATATTG
42222941 ATGCCAAC
1 ATGCCAAC
42222949 ATTTCAGACA
Statistics
Matches: 81, Mismatches: 7, Indels: 12
0.81 0.07 0.12
Matches are distributed among these distances:
41 1 0.01
42 3 0.04
43 72 0.89
44 4 0.05
45 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.28
Consensus pattern (43 bp):
ATGCCAACGTCCCAAACGTGGTCTTACATGTAATCACATATTG
Found at i:42222963 original size:43 final size:42
Alignment explanation
Indices: 42222812--42222981 Score: 164
Period size: 43 Copynumber: 4.0 Consensus size: 42
42222802 ATATCATACA
* * * *
42222812 ATGCCAACGTCCCAAACGTGGTCTTACATGTAATCATATATTG
1 ATGCCAAC-TTCCAGACATGGTCTTACATGTAATCACATATTG
* * * *
42222855 ATGCC-ACTGTCCCAGATAGGGTCTTACACGTAATCACATATCG
1 ATGCCAACT-T-CCAGACATGGTCTTACATGTAATCACATATTG
* *
42222898 ATGCCAACGTCCTAGACGTGGTCTTACATGTAATCACATATTG
1 ATGCCAACTTCC-AGACATGGTCTTACATGTAATCACATATTG
* *
42222941 ATGCCAACATTTCAGACATGGTCTTACA-GATAATTACATAT
1 ATGCCAAC-TTCCAGACATGGTCTTACATG-TAATCACATAT
42222982 CGATATTGAT
Statistics
Matches: 103, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
41 1 0.01
42 5 0.05
43 93 0.90
44 4 0.04
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (42 bp):
ATGCCAACTTCCAGACATGGTCTTACATGTAATCACATATTG
Found at i:42222964 original size:86 final size:86
Alignment explanation
Indices: 42222812--42222985 Score: 237
Period size: 86 Copynumber: 2.0 Consensus size: 86
42222802 ATATCATACA
* *
42222812 ATGCCAACGTCCCAAACGTGGTCTTACATGTAATCATATATTGATGCCACTGTCCCAGATAGGGT
1 ATGCCAACGTCCCAAACGTGGTCTTACATGTAATCACATATTGATGCCACTGTCCCAGACAGGGT
42222877 CTTACACG-TAATCACATATCG
66 CTTACA-GATAATCACATATCG
* * * *
42222898 ATGCCAACGTCCTAGACGTGGTCTTACATGTAATCACATATTGATGCCAACAT-T-TCAGACATG
1 ATGCCAACGTCCCAAACGTGGTCTTACATGTAATCACATATTGATGCC-AC-TGTCCCAGACAGG
*
42222961 GTCTTACAGATAATTACATATCG
64 GTCTTACAGATAATCACATATCG
42222984 AT
1 AT
42222986 ATTGATGCCC
Statistics
Matches: 78, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
85 1 0.01
86 73 0.94
87 3 0.04
88 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (86 bp):
ATGCCAACGTCCCAAACGTGGTCTTACATGTAATCACATATTGATGCCACTGTCCCAGACAGGGT
CTTACAGATAATCACATATCG
Found at i:42223001 original size:86 final size:87
Alignment explanation
Indices: 42222815--42223035 Score: 234
Period size: 86 Copynumber: 2.6 Consensus size: 87
42222805 TCATACAATG
* * * *
42222815 CCAACGTCCCAAACGTGGTCTTACATGTAATCATATATTGATGCC-ACTGTCCCAGATAGGGTCT
1 CCAACGCCCCAGACGTGGTCTTACATGTAATCACATATTGATGCCAACTGTCCCAGACAGGGTCT
*
42222879 TACACGTAATCACATATCGATG
66 TACACGTAATCACATATCGATA
* * * *
42222901 CCAACGTCCTAGACGTGGTCTTACATGTAATCACATATTGATGCCAACAT-T-TCAGACATGGTC
1 CCAACGCCCCAGACGTGGTCTTACATGTAATCACATATTGATGCCAAC-TGTCCCAGACAGGGTC
*
42222964 TTACA-GATAATTACATATCGATA
65 TTACACG-TAATCACATATCGATA
*** * * * **
42222987 TTGATGCCCCAGACGTGGTCTTACACGTAATAACATATCAATGCCAACT
1 CCAACGCCCCAGACGTGGTCTTACATGTAATCACATATTGATGCCAACT
42223036 CAAAATGTAC
Statistics
Matches: 114, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
85 2 0.02
86 108 0.95
87 3 0.03
88 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (87 bp):
CCAACGCCCCAGACGTGGTCTTACATGTAATCACATATTGATGCCAACTGTCCCAGACAGGGTCT
TACACGTAATCACATATCGATA
Found at i:42235085 original size:34 final size:34
Alignment explanation
Indices: 42235047--42235115 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
42235037 CATAGAAGGG
42235047 AAAAGTGATCAGCATGTTATAAAACATAAGAATA
1 AAAAGTGATCAGCATGTTATAAAACATAAGAATA
*
42235081 AAAAGTGATCATCATGTTATAAAACATAAGAATA
1 AAAAGTGATCAGCATGTTATAAAACATAAGAATA
42235115 A
1 A
42235116 GGAATTGAGT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.54, C:0.09, G:0.13, T:0.25
Consensus pattern (34 bp):
AAAAGTGATCAGCATGTTATAAAACATAAGAATA
Found at i:42243614 original size:43 final size:42
Alignment explanation
Indices: 42243560--42243767 Score: 260
Period size: 43 Copynumber: 4.9 Consensus size: 42
42243550 CCAACGTCCT
* *
42243560 AGACGTGGTCTTACATGTAATCATATATCGATGCCAC-TGCCCC
1 AGACGTGGTCTTACACGTAATCACATATCGATGCCACAT--CCC
*
42243603 AGACAGT-GTCTTACGCGTAATCACATATCGATGCCAACATCCC
1 AGAC-GTGGTCTTACACGTAATCACATATCGATGCC-ACATCCC
* *
42243646 AAACGTGGTCTTACATGTAATCACATATCGATGCCAACATCCC
1 AGACGTGGTCTTACACGTAATCACATATCGATGCC-ACATCCC
* *
42243689 AGACGTGGTCTTACACATAATTACATATCGATGCCA-ATGCCC
1 AGACGTGGTCTTACACGTAATCACATATCGATGCCACAT-CCC
*
42243731 TAGACGTGGTCTTACACGTAATCACATATCAATGCCA
1 -AGACGTGGTCTTACACGTAATCACATATCGATGCCA
42243768 ACTCAAAATG
Statistics
Matches: 146, Mismatches: 13, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
41 2 0.01
42 6 0.04
43 133 0.91
44 4 0.03
45 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.26
Consensus pattern (42 bp):
AGACGTGGTCTTACACGTAATCACATATCGATGCCACATCCC
Found at i:42243768 original size:86 final size:86
Alignment explanation
Indices: 42243539--42243771 Score: 289
Period size: 86 Copynumber: 2.7 Consensus size: 86
42243529 CGAATAGTCG
* * * *
42243539 CACATA-CAATGCCAACGTCCTAGACGTGGTCTTACATGTAATCATATATCGATGCC-ACTGCCC
1 CACATATCGATGCCAATGCCCTAGACGTGGTCTTACATGTAATCACATATCGATGCCAACT-CCC
* *
42243602 CAGACAGTGTCTTACGCGTAAT
65 CAGACAGTGTCTTACACATAAT
*
42243624 CACATATCGATGCCAACAT-CCC-AAACGTGGTCTTACATGTAATCACATATCGATGCCAACAT-
1 CACATATCGATGCC-A-ATGCCCTAGACGTGGTCTTACATGTAATCACATATCGATGCCAAC-TC
42243686 CCCAGAC-GTGGTCTTACACATAAT
63 CCCAGACAGT-GTCTTACACATAAT
* * *
42243710 TACATATCGATGCCAATGCCCTAGACGTGGTCTTACACGTAATCACATATCAATGCCAACTC
1 CACATATCGATGCCAATGCCCTAGACGTGGTCTTACATGTAATCACATATCGATGCCAACTC
42243772 AAAATGTACC
Statistics
Matches: 128, Mismatches: 11, Indels: 17
0.82 0.07 0.11
Matches are distributed among these distances:
84 2 0.02
85 13 0.10
86 106 0.83
87 5 0.04
88 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.25
Consensus pattern (86 bp):
CACATATCGATGCCAATGCCCTAGACGTGGTCTTACATGTAATCACATATCGATGCCAACTCCCC
AGACAGTGTCTTACACATAAT
Found at i:42251100 original size:43 final size:43
Alignment explanation
Indices: 42251041--42251263 Score: 306
Period size: 43 Copynumber: 5.2 Consensus size: 43
42251031 ATATCGTACA
* **
42251041 ATGCCAACGTCCCAGACGTGGTCTTGCATGTAATCATGTATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
*
42251084 ATGCC-ACAGTCTCAGACAG-GGTCTTACATGTAATCACATATCG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGTAATCACATATCG
*
42251127 ATGCCAACGTCCCAGACGTGATCTTACATGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
* * *
42251170 ATGCCAACATCCCAGATGTGGTCTTATATGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
** *
42251213 ATGCCAACGTCCCAGACGTGGTCTTACACATAATCACATATCA
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
*
42251256 ATGGCAAC
1 ATGCCAAC
42251264 TCAAAATGTA
Statistics
Matches: 159, Mismatches: 17, Indels: 8
0.86 0.09 0.04
Matches are distributed among these distances:
42 3 0.02
43 153 0.96
44 3 0.02
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
Found at i:42251849 original size:22 final size:22
Alignment explanation
Indices: 42251824--42251867 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
42251814 ATCCAAAACA
42251824 TATCTTTCATAATTCCTCAACT
1 TATCTTTCATAATTCCTCAACT
42251846 TATCTTTCATAATTCCTCAACT
1 TATCTTTCATAATTCCTCAACT
42251868 AACATCACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.27, G:0.00, T:0.45
Consensus pattern (22 bp):
TATCTTTCATAATTCCTCAACT
Found at i:42253286 original size:19 final size:19
Alignment explanation
Indices: 42253264--42253302 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
42253254 TAAAACTAGC
*
42253264 ATTAGAATTAAAAATAAAG
1 ATTAAAATTAAAAATAAAG
*
42253283 ATTAAAATTAAAATTAAAG
1 ATTAAAATTAAAAATAAAG
42253302 A
1 A
42253303 CAAAGACAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (19 bp):
ATTAAAATTAAAAATAAAG
Found at i:42270759 original size:43 final size:42
Alignment explanation
Indices: 42270609--42270760 Score: 157
Period size: 43 Copynumber: 3.5 Consensus size: 42
42270599 ATGTGTCATT
* *
42270609 GTGTAAGACCACA-TCTGGGACATTGGTATCGAT-TTGTGATTTAC
1 GTGTAAGACCA-AGTCTAGGACA-TGGCATCGATATT-TGA-TTAC
* *
42270653 GTGTAAGACCAAGTCTAGGACATCGGCATCG-TATATGATTTC
1 GTGTAAGACCAAGTCTAGGACAT-GGCATCGATATTTGATTAC
** *
42270695 GTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATTAC
1 GTGTAAGACCAAGTCTAGGACA-TGGCATCGATATTTGATTAC
*
42270738 ATGTAAGACCAAGTCTAGGACAT
1 GTGTAAGACCAAGTCTAGGACAT
42270761 TTGCATTGTA
Statistics
Matches: 90, Mismatches: 13, Indels: 12
0.78 0.11 0.10
Matches are distributed among these distances:
42 30 0.33
43 34 0.38
44 26 0.29
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCAAGTCTAGGACATGGCATCGATATTTGATTAC
Found at i:42273149 original size:37 final size:37
Alignment explanation
Indices: 42273088--42273165 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 37
42273078 TATTACGAAG
* ** *
42273088 TCTTACCCGGACATAATCTGCACACGAAGTTATCGGA
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
* *
42273125 TCTTACCCGGACAAAATCCCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
42273162 TCTT
1 TCTT
42273166 TAGAGCTCGG
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
Found at i:42273353 original size:47 final size:47
Alignment explanation
Indices: 42273284--42273697 Score: 670
Period size: 47 Copynumber: 8.7 Consensus size: 47
42273274 CCCTTCGGGA
* * * * *
42273284 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
42273331 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
42273378 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
42273425 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATT-GGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
42273473 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
42273522 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
42273569 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
42273616 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** * *
42273663 CTTATTTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
42273698 AGAATCCTAA
Statistics
Matches: 350, Mismatches: 13, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
46 1 0.00
47 256 0.73
48 48 0.14
49 45 0.13
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:42277627 original size:40 final size:40
Alignment explanation
Indices: 42277595--42277906 Score: 507
Period size: 40 Copynumber: 7.8 Consensus size: 40
42277585 CCAGCATGAT
* * * *
42277595 TGCTCTTCGAGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* ** *
42277635 TGCTCTTTGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
42277675 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
42277715 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
42277755 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
42277795 TGCTCTTCGGGACATAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
42277835 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
42277875 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
42277907 CTCAATTCTC
Statistics
Matches: 252, Mismatches: 20, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 252 1.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:42279389 original size:47 final size:47
Alignment explanation
Indices: 42279320--42279680 Score: 561
Period size: 47 Copynumber: 7.7 Consensus size: 47
42279310 CCCTTCGGGA
* * * * *
42279320 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
42279367 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
42279414 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
42279461 CTTATCACATATATACAC-TTCACATTCATCACATC-GCTATTA-G-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
42279504 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
42279551 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
42279598 CCTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** * *
42279646 CTTATTTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
42279681 AGAATCCTAA
Statistics
Matches: 295, Mismatches: 13, Indels: 12
0.92 0.04 0.04
Matches are distributed among these distances:
43 18 0.06
44 18 0.06
45 13 0.04
46 19 0.06
47 181 0.61
48 46 0.16
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:42279570 original size:137 final size:140
Alignment explanation
Indices: 42279320--42279680 Score: 559
Period size: 137 Copynumber: 2.6 Consensus size: 140
42279310 CCCTTCGGGA
* * * *
42279320 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCAC-ATCGCTATTAGGCCTTATCACATATATACAC
42279385 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
65 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
42279450 GGCCATTAGGC
130 GGCCATTAGGC
42279461 CTTATCACATATATACAC-TTCACATTCATCACATCGCTATTA-G-CTTATCACATATATACACT
1 CTTATCACATATATACACTTTCACATTCATCACATCGCTATTAGGCCTTATCACATATATACACT
*
42279523 TTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
66 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
42279588 GCCATTAGGC
131 GCCATTAGGC
* * ** *
42279598 CCTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATTTCATATATGCA
1 CTTA-TCACATATATACACTTTCACATTCATCACATC-GCTATTAGGCCTTATCACATATATACA
*
42279663 -TGTTCACATCCATCACAT
64 CT-TTCACATTCATCACAT
42279681 AGAATCCTAA
Statistics
Matches: 203, Mismatches: 11, Indels: 11
0.90 0.05 0.05
Matches are distributed among these distances:
137 96 0.47
138 15 0.07
139 25 0.12
140 19 0.09
141 19 0.09
142 29 0.14
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (140 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGCTATTAGGCCTTATCACATATATACACT
TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
GCCATTAGGC
Found at i:42288499 original size:268 final size:268
Alignment explanation
Indices: 42288015--42288550 Score: 991
Period size: 268 Copynumber: 2.0 Consensus size: 268
42288005 GTAATATTTG
42288015 AGATAGTAGAAATATCTCGTTGAACCTTAGGATATGAATTGGATATTCGTGCTAAGACGTTGGGT
1 AGATAGTAGAAATATCTCGTTGAACCTTAGGATATGAATTGGATATTCGTGCTAAGACGTTGGGT
*
42288080 GATTTGTACACCAGTATGAGACCATGTCTGGGACATGGCATCGGCATCCAGACGAGGGCTAGTGT
66 GATTTGTACACCAGTATAAGACCATGTCTGGGACATGGCATCGGCATCCAGACGAGGGCTAGTGT
42288145 AAGACATGTCTGGGACATGCTTCAGACATATTATGAGTGCCAGAGTAAGACATGTCTAGGACATG
131 AAGACATGTCTGGGACATGCTTCAGACATATTATGAGTGCCAGAGTAAGACATGTCTAGGACATG
* *
42288210 CATCGGCCTCAACAGAGATAGCCAGTGTAAGACGTGTCTGGGACATGCATCGGCTAAGAGTTGTG
196 CATCAGCCTCAACAAAGATAGCCAGTGTAAGACGTGTCTGGGACATGCATCGGCTAAGAGTTGTG
42288275 CTAGTGTA
261 CTAGTGTA
42288283 AGATAGTAGAAATATCTCGTTGAACCTTAGGATATGAATTGGATATTCGTGCTAAGACGTTGGGT
1 AGATAGTAGAAATATCTCGTTGAACCTTAGGATATGAATTGGATATTCGTGCTAAGACGTTGGGT
* *
42288348 GATTTGTACGCCAGTATAAGACCATGTCTGGGACATGGCATCGGCATCCAGGCGAGGGCTAGTGT
66 GATTTGTACACCAGTATAAGACCATGTCTGGGACATGGCATCGGCATCCAGACGAGGGCTAGTGT
* *
42288413 AAGACATGTCTGGGACATGCTTTAGCCATATTATGAGTGCCAGAGTAAGACATGTCTAGGACATG
131 AAGACATGTCTGGGACATGCTTCAGACATATTATGAGTGCCAGAGTAAGACATGTCTAGGACATG
* *
42288478 CATCAGCCTCAACAAAGATAGCTAGTGTAAGACGTGTCTGGGACATGCATTGGCTAAGAGTTGTG
196 CATCAGCCTCAACAAAGATAGCCAGTGTAAGACGTGTCTGGGACATGCATCGGCTAAGAGTTGTG
42288543 CTAGTGTA
261 CTAGTGTA
42288551 GGACATGTCT
Statistics
Matches: 259, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
268 259 1.00
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.26
Consensus pattern (268 bp):
AGATAGTAGAAATATCTCGTTGAACCTTAGGATATGAATTGGATATTCGTGCTAAGACGTTGGGT
GATTTGTACACCAGTATAAGACCATGTCTGGGACATGGCATCGGCATCCAGACGAGGGCTAGTGT
AAGACATGTCTGGGACATGCTTCAGACATATTATGAGTGCCAGAGTAAGACATGTCTAGGACATG
CATCAGCCTCAACAAAGATAGCCAGTGTAAGACGTGTCTGGGACATGCATCGGCTAAGAGTTGTG
CTAGTGTA
Found at i:42292907 original size:44 final size:42
Alignment explanation
Indices: 42292835--42292994 Score: 158
Period size: 43 Copynumber: 3.7 Consensus size: 42
42292825 ATATGTGTTA
* * * * *
42292835 TCGTGTAAGACCACGTCTGGGACGTTGGCATCAATTTTTTATT
1 TCGTGTAAGACCATGTCTGGGACATTGGCATC-ATATATGATT
* *
42292878 TACGTGTAAGACCATGCCTAGGACATTGGCATCATATATGATT
1 T-CGTGTAAGACCATGTCTGGGACATTGGCATCATATATGATT
* * * *
42292921 TCGTGTAAGACCTTGTCTGGGACAGTGGCATTGATATTTGATT
1 TCGTGTAAGACCATGTCTGGGACATTGGCA-TCATATATGATT
* * * *
42292964 ACATGTAAGACCACGTCTGGGACGTTGGCAT
1 TCGTGTAAGACCATGTCTGGGACATTGGCAT
42292995 TGTACGAACT
Statistics
Matches: 96, Mismatches: 19, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
42 26 0.27
43 43 0.45
44 27 0.28
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (42 bp):
TCGTGTAAGACCATGTCTGGGACATTGGCATCATATATGATT
Found at i:42294884 original size:28 final size:28
Alignment explanation
Indices: 42294852--42294979 Score: 175
Period size: 29 Copynumber: 4.5 Consensus size: 28
42294842 ATAGTAAGTC
*
42294852 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
42294880 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
42294909 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
42294937 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
42294966 CGCACACTTAGTGC
1 CGCACACTTAGTGC
42294980 CAATCTCATG
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 44 0.49
29 45 0.51
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:42294942 original size:57 final size:57
Alignment explanation
Indices: 42294851--42294979 Score: 188
Period size: 57 Copynumber: 2.3 Consensus size: 57
42294841 TATAGTAAGT
*
42294851 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACA-AATCAAAC
* * * * *
42294908 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
42294965 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
42294980 CAATCTCATG
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
Found at i:42302890 original size:29 final size:29
Alignment explanation
Indices: 42302832--42302988 Score: 221
Period size: 29 Copynumber: 5.5 Consensus size: 29
42302822 ATAGTAAGTC
*
42302832 CGCACACTTAGTG-TTATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
42302860 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
42302889 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
*
42302918 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
* * * * *
42302946 TGCACACTTAGTGCTATGCA-ATTTAAACC
1 CGCACACTTAGTGCT-TACATAATCAAACT
42302975 CGCACACTTAGTGC
1 CGCACACTTAGTGC
42302989 AATCTCATGA
Statistics
Matches: 117, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
28 39 0.33
29 76 0.65
30 2 0.02
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCAAACT
Found at i:42302939 original size:57 final size:58
Alignment explanation
Indices: 42302832--42302988 Score: 221
Period size: 57 Copynumber: 2.7 Consensus size: 58
42302822 ATAGTAAGTC
*
42302832 CGCACACTTAGTG-TTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
*
42302889 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
* * * * *
42302946 TGCACACTTAGTGCTATGCA-ATTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCT-TACATAATCAAACTCGCACACTTAGTGC
42302989 AATCTCATGA
Statistics
Matches: 91, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
57 60 0.66
58 31 0.34
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (58 bp):
CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
Found at i:42308227 original size:33 final size:33
Alignment explanation
Indices: 42308180--42308246 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
42308170 CCGTTTACTT
* *
42308180 AGCTACATACATTGATATGGCCATGCCCCGAGA
1 AGCTAAATAAATTGATATGGCCATGCCCCGAGA
42308213 AGCTAAATAAATTGATATGGCCATGCCCCGAGA
1 AGCTAAATAAATTGATATGGCCATGCCCCGAGA
42308246 A
1 A
42308247 CGCCCCTGGT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.34, C:0.24, G:0.21, T:0.21
Consensus pattern (33 bp):
AGCTAAATAAATTGATATGGCCATGCCCCGAGA
Found at i:42308374 original size:30 final size:31
Alignment explanation
Indices: 42308315--42308383 Score: 97
Period size: 30 Copynumber: 2.3 Consensus size: 31
42308305 ATCCTAGCCT
*
42308315 ATTGAGCTTGATTCAGCTCGAATTTTAGCTC
1 ATTGAGCTTGATTCAGCTCGAACTTTAGCTC
*
42308346 ATTGAGCTTGA-TCTGACTC-AACTTTAGCTC
1 ATTGAGCTTGATTCAG-CTCGAACTTTAGCTC
42308376 ATTGAGCT
1 ATTGAGCT
42308384 CGTTCTATCT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
30 21 0.60
31 14 0.40
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.38
Consensus pattern (31 bp):
ATTGAGCTTGATTCAGCTCGAACTTTAGCTC
Found at i:42308507 original size:18 final size:19
Alignment explanation
Indices: 42308467--42308508 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
42308457 TAAATTTAGT
* *
42308467 TTAAG-TAATTAATGTTTC
1 TTAAGTTAATTAATATGTC
42308485 TTAAGTTAATTAATATGTC
1 TTAAGTTAATTAATATGTC
42308504 -TAAGT
1 TTAAGT
42308509 ATTTTTTGCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.36, C:0.05, G:0.12, T:0.48
Consensus pattern (19 bp):
TTAAGTTAATTAATATGTC
Found at i:42314892 original size:51 final size:53
Alignment explanation
Indices: 42314831--42314934 Score: 194
Period size: 51 Copynumber: 2.0 Consensus size: 53
42314821 TATTTTTATC
42314831 ATACAAATGTTATATCTAGAATAGTTATTATCTTTCTCATGTT-AAATTCTTT
1 ATACAAATGTTATATCTAGAATAGTTATTATCTTTCTCATGTTAAAATTCTTT
42314883 ATAC-AATGTTATATCTAGAATAGTTATTATCTTTCTCATGTTAAAATTCTTT
1 ATACAAATGTTATATCTAGAATAGTTATTATCTTTCTCATGTTAAAATTCTTT
42314935 CTCATTATAT
Statistics
Matches: 51, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
51 38 0.75
52 13 0.25
ACGTcount: A:0.33, C:0.12, G:0.08, T:0.48
Consensus pattern (53 bp):
ATACAAATGTTATATCTAGAATAGTTATTATCTTTCTCATGTTAAAATTCTTT
Found at i:42327422 original size:40 final size:40
Alignment explanation
Indices: 42327385--42327516 Score: 151
Period size: 40 Copynumber: 3.3 Consensus size: 40
42327375 GCTACTCGTT
*
42327385 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCA
* *
42327425 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * * * * *
42327465 CAAATGCCTTCGGG-CTTAGCTCGAAATTAGTATCTCGTA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
42327504 CAAATGCCTTCGG
1 CAAATGCCTTCGG
42327517 ATCTTAGTCT
Statistics
Matches: 81, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
39 32 0.40
40 47 0.58
41 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:42335479 original size:79 final size:82
Alignment explanation
Indices: 42335334--42335518 Score: 213
Period size: 79 Copynumber: 2.3 Consensus size: 82
42335324 GCTACTCGTT
* *
42335334 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACTCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACTCG
* * *
42335398 GATTTTGTAAC-TCGCA
66 GATATGGTAACTTAGCA
* ** *
42335414 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTC-TTATCTT-AGTC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACT-
*
42335475 CGGATATGGTCACTTAGCA
64 CGGATATGGTAACTTAGCA
42335494 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
42335519 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
78 3 0.03
79 53 0.59
80 34 0.38
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACTCG
GATATGGTAACTTAGCA
Found at i:42335518 original size:40 final size:40
Alignment explanation
Indices: 42335315--42335518 Score: 202
Period size: 40 Copynumber: 5.1 Consensus size: 40
42335305 CGGAATTTAA
** *
42335315 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
42335355 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
42335395 TCGGATTTTGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* ** *
42335434 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-TTATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
42335474 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
42335514 CCGGA
1 CCGGA
42335519 CATCATTCAA
Statistics
Matches: 133, Mismatches: 24, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
39 31 0.23
40 92 0.69
41 10 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:42342082 original size:34 final size:34
Alignment explanation
Indices: 42342036--42342125 Score: 92
Period size: 34 Copynumber: 2.6 Consensus size: 34
42342026 TTGAACATTC
* ** * *
42342036 TGGGCCTAAGCCCATATCAGTCGCAATATCAGTG
1 TGGGCCTTAGCCCATATCAGTAACAATATCAATA
**
42342070 TGGGCCTTAGCCCA-ATACAGTAACTGTATCAATA
1 TGGGCCTTAGCCCATAT-CAGTAACAATATCAATA
*
42342104 TGGGCCTTAGCCCATTTCAGTA
1 TGGGCCTTAGCCCATATCAGTA
42342126 CAGTATCCAA
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
33 2 0.04
34 43 0.93
35 1 0.02
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.27
Consensus pattern (34 bp):
TGGGCCTTAGCCCATATCAGTAACAATATCAATA
Found at i:42350781 original size:21 final size:20
Alignment explanation
Indices: 42350749--42350787 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
42350739 CTTGACACAG
*
42350749 GGGCACATGCCCGAGTGAAA
1 GGGCACACGCCCGAGTGAAA
*
42350769 GGGCAACACGCCCGTGTGA
1 GGGC-ACACGCCCGAGTGA
42350788 CCATTTTGAC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.26, C:0.28, G:0.36, T:0.10
Consensus pattern (20 bp):
GGGCACACGCCCGAGTGAAA
Found at i:42352104 original size:46 final size:45
Alignment explanation
Indices: 42352023--42352190 Score: 142
Period size: 46 Copynumber: 3.6 Consensus size: 45
42352013 TGTAGCCGAC
* * *
42352023 GCATGTCCCAGACATGTCTTGCACTGGCTTACGTCTCGAGGATGAT
1 GCATGTCCCAGACATGTCTTACACTAGCCT-CGTCTCGAGGATGAT
* ** *
42352069 GCATGTCCCAGACATGTCTTACTCTAGCACTCGTCTC-AATACGGAT
1 GCATGTCCCAGACATGTCTTACACTAGC-CTCGTCTCGAGGA-TGAT
* ** * *
42352115 GCCATGTCCCAGACATGGTCTTACAC-AGGTTCTCGTAACGTGGCTGAT
1 G-CATGTCCCAGACAT-GTCTTACACTA-G-CCTCGTCTCGAGGATGAT
*
42352163 GCATGTCCCAAACATGTCTTACACTAGC
1 GCATGTCCCAGACATGTCTTACACTAGC
42352191 TCACACAAAT
Statistics
Matches: 96, Mismatches: 18, Indels: 17
0.73 0.14 0.13
Matches are distributed among these distances:
45 2 0.02
46 45 0.47
47 30 0.31
48 19 0.20
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (45 bp):
GCATGTCCCAGACATGTCTTACACTAGCCTCGTCTCGAGGATGAT
Found at i:42358446 original size:21 final size:21
Alignment explanation
Indices: 42358418--42358473 Score: 87
Period size: 21 Copynumber: 2.7 Consensus size: 21
42358408 CTTGACACAG
*
42358418 GGGC-ACACGCCTGTGTGAAA
1 GGGCAACACGCCCGTGTGAAA
42358438 GGGCAACACGCCCGTGTGAAA
1 GGGCAACACGCCCGTGTGAAA
*
42358459 GGGCAACATGCCCGT
1 GGGCAACACGCCCGT
42358474 CTAACCATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
20 4 0.12
21 29 0.88
ACGTcount: A:0.25, C:0.29, G:0.34, T:0.12
Consensus pattern (21 bp):
GGGCAACACGCCCGTGTGAAA
Found at i:42360633 original size:40 final size:40
Alignment explanation
Indices: 42360556--42360771 Score: 305
Period size: 40 Copynumber: 5.4 Consensus size: 40
42360546 AAACCAAGTA
* * *
42360556 CCTTCGGGATTTAG-CTGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
42360595 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
42360635 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
42360675 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
42360715 CCTTCGGTG-CTTAGCCCAGA-ATTAATCACTAGCACAAATG
1 CCTTCGG-GACTTAGCCCGGATA-TAGTAACTCGCACAAATG
42360755 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
42360772 AGTTATCATC
Statistics
Matches: 163, Mismatches: 9, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
39 16 0.10
40 146 0.90
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:42363102 original size:33 final size:33
Alignment explanation
Indices: 42363060--42363128 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 33
42363050 ACTTGATTGA
*
42363060 AAACTATTGTTGTAAGTGAATTCAACCCAAGGT
1 AAACTATTGTTGTAAGTGAATTCAACCAAAGGT
42363093 AAACTATTGTTGTAAGTGAATTCAACCAAAGGT
1 AAACTATTGTTGTAAGTGAATTCAACCAAAGGT
42363126 AAA
1 AAA
42363129 TACCGTTCCC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.41, C:0.13, G:0.17, T:0.29
Consensus pattern (33 bp):
AAACTATTGTTGTAAGTGAATTCAACCAAAGGT
Found at i:42368653 original size:40 final size:40
Alignment explanation
Indices: 42368576--42368753 Score: 238
Period size: 40 Copynumber: 4.5 Consensus size: 40
42368566 AAACCAAGTA
* * *
42368576 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCACACAAATG
*
42368615 CCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
42368655 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
* * *
42368695 CCTTCGGGGCTTAGCCTGGA-ATTAGTCACT-AGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCA-CACAAATG
42368735 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
42368754 TTATCATCCG
Statistics
Matches: 125, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
39 16 0.13
40 109 0.87
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
Found at i:42370944 original size:46 final size:46
Alignment explanation
Indices: 42370861--42370973 Score: 140
Period size: 46 Copynumber: 2.4 Consensus size: 46
42370851 AAATCGAAGC
42370861 CATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTA-GCCGATG
1 CATGTCCCAGACAT-GTCTTACACTGACTATCATCTCG-AGGCCGATG
* * * *
42370908 CATGTCCCAGACATGTCTTACATTGGCT-TACGTCTCGAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTGACTAT-CATCTCGAGGCCGATG
*
42370954 CATGTCCCAAACATGTCTTA
1 CATGTCCCAGACATGTCTTA
42370974 ATCTAGCACT
Statistics
Matches: 59, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
45 2 0.03
46 43 0.73
47 14 0.24
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGACTATCATCTCGAGGCCGATG
Found at i:42387953 original size:2 final size:2
Alignment explanation
Indices: 42387948--42387977 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
42387938 CATATATATA
42387948 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
42387978 ACATTGAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:42401539 original size:40 final size:40
Alignment explanation
Indices: 42401357--42401528 Score: 258
Period size: 40 Copynumber: 4.3 Consensus size: 40
42401347 GCTACTCGTT
* *
42401357 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
42401397 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
42401437 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * *
42401477 CAAATGCCTTC-GGATCTTAGTCCAGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
42401517 CAAATGCCTTCG
1 CAAATGCCTTCG
42401529 AATCTTAGTC
Statistics
Matches: 123, Mismatches: 6, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
39 3 0.02
40 118 0.96
41 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:42401542 original size:80 final size:81
Alignment explanation
Indices: 42401350--42401575 Score: 266
Period size: 80 Copynumber: 2.8 Consensus size: 81
42401340 GGATATAGCT
* *
42401350 ACTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACT
1 ACTCGTACAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACT
*
42401414 TAACCCGGATTTAGTA
66 TAACCCAGATTTAGTA
* *
42401430 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAATGCCTTC-GGATC
1 ACTCGTACAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGA-C
**
42401493 TTAGTCCAGATTTAGTA
65 TTAACCCAGATTTAGTA
* * * * * *
42401510 ACTCGTACAAATGCCTTC-GAATCTTAGTCCGGA-TATGGTCACCTAGCACAAA-GCCTTCAGGA
1 ACTCGTACAAATGCCTTCGGGA-CTTAGCCCGGATTATAGT-AACTCGCACAAATGCCTTCGGGA
42401572 CTTA
64 CTTA
42401576 GCCCGGACAT
Statistics
Matches: 126, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
79 6 0.05
80 105 0.83
81 15 0.12
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (81 bp):
ACTCGTACAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACT
TAACCCAGATTTAGTA
Found at i:42401566 original size:40 final size:40
Alignment explanation
Indices: 42401383--42401567 Score: 142
Period size: 40 Copynumber: 4.6 Consensus size: 40
42401373 ATAGCCCGGT
* * ** *
42401383 TATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGA
1 TATAGTAACTAGCACAAATGCCTTC-GAATCTTAGTCCAGA
* * * ** *
42401423 TTTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGA
1 TATAGTAACTAGCACAAATGCCTTC-GAATCTTAGTCCAGA
* * *
42401463 TTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCAGA
1 TATAGTAACTAGCACAAATGCCTTCGAATCTTAGTCCAGA
* * * *
42401503 TTTAGTAACTCGTACAAATGCCTTCGAATCTTAGTCCGGA
1 TATAGTAACTAGCACAAATGCCTTCGAATCTTAGTCCAGA
* *
42401543 TATGGTCACCTAGCACAAA-GCCTTC
1 TATAGT-AACTAGCACAAATGCCTTC
42401568 AGGACTTAGC
Statistics
Matches: 131, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 3 0.02
40 119 0.91
41 9 0.07
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.27
Consensus pattern (40 bp):
TATAGTAACTAGCACAAATGCCTTCGAATCTTAGTCCAGA
Found at i:42409398 original size:40 final size:40
Alignment explanation
Indices: 42409361--42409586 Score: 246
Period size: 40 Copynumber: 5.7 Consensus size: 40
42409351 GCTACTCGTT
* **
42409361 CAAATGCCTTCGGGACATGGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
42409401 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
42409441 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * *
42409481 CAAATGCCTTC-GGATCTTAGTCCAGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
* ** * * *
42409521 CAAATGCCATC-GGATCTTAGTCCGGATAT-GCTCACCTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAG-T-AACTCGCA
*
42409562 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
42409587 CATCATTCAA
Statistics
Matches: 166, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 4 0.02
40 148 0.89
41 14 0.08
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:42414475 original size:35 final size:35
Alignment explanation
Indices: 42414414--42414481 Score: 91
Period size: 35 Copynumber: 1.9 Consensus size: 35
42414404 CTTATGCTGT
*
42414414 TTGGTAAAATTGACAATAAATATGCCTAGCATTAG
1 TTGGTAAAATTGACAATAAATATGCCTAACATTAG
* * * *
42414449 TTGGTATAATTGACAATTAGTGTGCCTAACATT
1 TTGGTAAAATTGACAATAAATATGCCTAACATT
42414482 CCCTAGCACG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 28 1.00
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (35 bp):
TTGGTAAAATTGACAATAAATATGCCTAACATTAG
Found at i:42419614 original size:49 final size:49
Alignment explanation
Indices: 42419543--42419667 Score: 153
Period size: 49 Copynumber: 2.6 Consensus size: 49
42419533 TCAAAGTTGG
* * *
42419543 TGCCATGTCCCAGAAAGCTCTTACACTGACTTTCATATATCGAG-GCCGA
1 TGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCG-GTGCCGA
* * * * *
42419592 TGCCGTGTCCTAGACAGGTCTTACACTGGCTCTCATCTATCGGTGTCGA
1 TGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGTGCCGA
*
42419641 TACCATGTCCCAGACAGGTCTTACACT
1 TGCCATGTCCCAGACAGGTCTTACACT
42419668 AACACACAAC
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
48 1 0.02
49 63 0.98
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (49 bp):
TGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGTGCCGA
Found at i:42419788 original size:46 final size:46
Alignment explanation
Indices: 42419722--42419854 Score: 173
Period size: 46 Copynumber: 2.9 Consensus size: 46
42419712 AGCTTGTATA
* * * *
42419722 TCTCAAGGCCGATGCATGTCCCAGACATGTTTTGCTCTAGCTCTCG
1 TCTCAATGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCG
*
42419768 TCTCAATGCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCG
1 TCTCAATGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCG
42419814 --T-AATGTGGCCGATGCATGTCCCAGACATGTCTTACACTAGC
1 TCTCAA--T-GCCGATGCATGTCCCAGACATGTCTTACACTAGC
42419855 ACACATATCA
Statistics
Matches: 78, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
43 2 0.03
44 1 0.01
45 1 0.01
46 74 0.95
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.29
Consensus pattern (46 bp):
TCTCAATGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCG
Found at i:42420523 original size:20 final size:18
Alignment explanation
Indices: 42420486--42420536 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
42420476 CTATAGCAAC
42420486 TCACAATTT-CAATTATT
1 TCACAATTTACAATTATT
42420503 TCACACATTTACAACTTATT
1 TCACA-ATTTACAA-TTATT
*
42420523 TTACAACTTTACAA
1 TCACAA-TTTACAA
42420537 AATAGCCCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 4 0.14
20 16 0.55
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (18 bp):
TCACAATTTACAATTATT
Found at i:42425948 original size:49 final size:49
Alignment explanation
Indices: 42425856--42425985 Score: 118
Period size: 49 Copynumber: 2.7 Consensus size: 49
42425846 CATCAAATTT
* * ** * * *
42425856 GATGCCATGTCACAGACAAATCTTACATTGACTTTCATATATCGAG-GCT
1 GATGCCATGTCCCAAACAGGTCTTACACTGACTCTCATATATCG-GTGCC
* * * * *
42425905 GATGTCGTGTCCCAAATAGGTCTTACACTGGCTCTCATCTATCGGTGCC
1 GATGCCATGTCCCAAACAGGTCTTACACTGACTCTCATATATCGGTGCC
**
42425954 GATGCCATGTCCCGGACAGGTCTTACACTGAC
1 GATGCCATGTCCCAAACAGGTCTTACACTGAC
42425986 ACACAACAAG
Statistics
Matches: 62, Mismatches: 18, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
48 1 0.02
49 61 0.98
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (49 bp):
GATGCCATGTCCCAAACAGGTCTTACACTGACTCTCATATATCGGTGCC
Found at i:42426111 original size:46 final size:46
Alignment explanation
Indices: 42426003--42426169 Score: 153
Period size: 46 Copynumber: 3.6 Consensus size: 46
42425993 AAGCTGACGC
* * * *
42426003 CATGTCCCAGACAAGTCTTACTCTAGCT-TGTAT-ATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCT-TATAATAT---GGCCAATG
* * * *
42426051 CATGTCCCAAACATGTTTTACACTAGCTCTCGTCTCA-AT-GCCAATG
1 CATGTCCCAGACATGTCTTACACTAGCTCT--TATAATATGGCCAATG
* * *
42426097 TATGTCCCAGACATGTCTTACACTGGCTCTTATAATATGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTTATAATATGGCCAATG
42426143 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
42426170 ACACATATCA
Statistics
Matches: 98, Mismatches: 16, Indels: 12
0.78 0.13 0.10
Matches are distributed among these distances:
44 3 0.03
45 2 0.02
46 63 0.64
48 24 0.24
49 1 0.01
50 4 0.04
51 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTTATAATATGGCCAATG
Found at i:42431225 original size:28 final size:28
Alignment explanation
Indices: 42431188--42431246 Score: 109
Period size: 28 Copynumber: 2.1 Consensus size: 28
42431178 AGACGATTTG
*
42431188 TTTGATCAGTTGAAAGGTGTAACAGTGT
1 TTTGATCAGTTGAAAGGTGCAACAGTGT
42431216 TTTGATCAGTTGAAAGGTGCAACAGTGT
1 TTTGATCAGTTGAAAGGTGCAACAGTGT
42431244 TTT
1 TTT
42431247 CAAATATTCA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.27, C:0.08, G:0.27, T:0.37
Consensus pattern (28 bp):
TTTGATCAGTTGAAAGGTGCAACAGTGT
Found at i:42435757 original size:40 final size:39
Alignment explanation
Indices: 42435673--42435857 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
42435663 TCGAATGATG
* * * *
42435673 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
42435713 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
*
42435753 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
42435792 TCTGGGTTAAGCCCCGAAGGCATTTGTGCAAGTTACTATAA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
*
42435833 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAG-CCCGAAGGCATTTG
42435858 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 34 0.28
40 79 0.65
41 9 0.07
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:42435879 original size:79 final size:79
Alignment explanation
Indices: 42435726--42435880 Score: 190
Period size: 79 Copynumber: 2.0 Consensus size: 79
42435716 GGACTAAGAT
* * **
42435726 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCAAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
42435791 ATCTGGGTTAAGCC
66 ATCTCGGTTAAGCC
* *
42435805 CCGAAGGCATTTGTGCAAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCAAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
42435868 TATATC-CGGTTAA
63 TAAATCTCGGTTAA
42435881 ATTCCGAAGG
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
78 2 0.03
79 40 0.62
80 23 0.35
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCAAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCTCGGTTAAGCC
Found at i:42440972 original size:21 final size:20
Alignment explanation
Indices: 42440944--42440982 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
42440934 ATGTGTATTT
42440944 TGAAGCTTCTTGATAGATTG
1 TGAAGCTTCTTGATAGATTG
*
42440964 TGAATGCTTGTTGATAGAT
1 TGAA-GCTTCTTGATAGAT
42440983 ATACAAGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.26, C:0.08, G:0.26, T:0.41
Consensus pattern (20 bp):
TGAAGCTTCTTGATAGATTG
Found at i:42445973 original size:20 final size:20
Alignment explanation
Indices: 42445949--42446007 Score: 57
Period size: 20 Copynumber: 3.0 Consensus size: 20
42445939 GCTGCCTCAA
*
42445949 ATTGCACATTTTTGCCTCTG
1 ATTGCACATTTATGCCTCTG
* * *
42445969 TTTGCAC-TTCGATGCCTTTG
1 ATTGCACATT-TATGCCTCTG
*
42445989 ATTGCACATTTGTGCCTCT
1 ATTGCACATTTATGCCTCT
42446008 TTCTGCACTT
Statistics
Matches: 29, Mismatches: 8, Indels: 4
0.71 0.20 0.10
Matches are distributed among these distances:
19 2 0.07
20 25 0.86
21 2 0.07
ACGTcount: A:0.14, C:0.25, G:0.17, T:0.44
Consensus pattern (20 bp):
ATTGCACATTTATGCCTCTG
Found at i:42445985 original size:40 final size:40
Alignment explanation
Indices: 42445920--42446026 Score: 126
Period size: 40 Copynumber: 2.7 Consensus size: 40
42445910 TGTTTGTACA
* * *
42445920 GTGCTTCTGTTTGCACTTTGCTGCCTCAAATTGCACATTT
1 GTGCCTCTGTTTGCACTTCGATGCCTCAAATTGCACATTT
* ***
42445960 TTGCCTCTGTTTGCACTTCGATGCCTTTGATTGCACATTT
1 GTGCCTCTGTTTGCACTTCGATGCCTCAAATTGCACATTT
*
42446000 GTGCCTCT-TTCTGCACTTCGGTGCCTC
1 GTGCCTCTGTT-TGCACTTCGATGCCTC
42446027 TGTTATGCAT
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
39 2 0.04
40 54 0.96
ACGTcount: A:0.11, C:0.28, G:0.19, T:0.42
Consensus pattern (40 bp):
GTGCCTCTGTTTGCACTTCGATGCCTCAAATTGCACATTT
Found at i:42453298 original size:17 final size:18
Alignment explanation
Indices: 42453268--42453301 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
42453258 ATTTGGCTTG
42453268 CTCGTGTAGGCCCACACA
1 CTCGTGTAGGCCCACACA
42453286 CTCGTGT-GGCCCACAC
1 CTCGTGTAGGCCCACAC
42453302 GCCCAGATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.18, C:0.41, G:0.24, T:0.18
Consensus pattern (18 bp):
CTCGTGTAGGCCCACACA
Found at i:42455842 original size:48 final size:47
Alignment explanation
Indices: 42455771--42456102 Score: 263
Period size: 48 Copynumber: 6.9 Consensus size: 47
42455761 GACATTTGGA
* * * *
42455771 TGATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCACTAGCGT
1 TGATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCA-TAGCCT
* * * *
42455819 TGATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCC-
1 TGATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT-AGCCT
** * *
42455866 ACATTATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCT
1 TGA-TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATAG-CCT
** * *
42455915 CAATATGCGAGCCAATGTAAGACCATGTCTGGGACATGGCATCAGCCT
1 TGATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT-AGCCT
** * * * * *
42455963 CAATATATGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCAT
1 TGATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT-AGCCT
* * * * * *
42456011 TGTTATATGTGTCAATGTAAGACCATGTCTGGGACATGGCATCGGCAC-
1 TGATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT-AGC-CT
* * * *
42456059 TGATGTATGAGAGCCAATGTAAGACCATATCCGGGACATGGCAT
1 TGA--TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
42456103 CAACATTTTA
Statistics
Matches: 239, Mismatches: 37, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
47 3 0.01
48 201 0.84
49 2 0.01
50 33 0.14
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (47 bp):
TGATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATAGCCT
Found at i:42455948 original size:96 final size:96
Alignment explanation
Indices: 42455784--42456109 Score: 370
Period size: 96 Copynumber: 3.4 Consensus size: 96
42455774 TATGTGTGCT
* * * * * *
42455784 AGTGTAAGACCATGTTTGGGACATGGCA-CTAGCGTTGATATGTGTGCTAGTGTAAGACCATGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGA-CATTGATATGTGTGCCAATGTAAGACCATGTC
42455848 TGGGACATGGCATCGGCCACATTATGAGAGCC
65 TGGGACATGGCATCGGCCACATTATGAGAGCC
* ** * *
42455880 AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCAATATGCGAGCCAATGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGATATGTGTGCCAATGTAAGACCATGTCT
* * *
42455945 GGGACATGGCATCAGCCTCAATAT-ATGAGCC
66 GGGACATGGCATCGGCCACATTATGA-GAGCC
* * * * * *
42455976 AGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATATGTGTCAATGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGATATGTGTGCCAATGTAAGACCATGTCT
42456041 GGGACATGGCATCGG-CACTGATGTATGAGAGCC
66 GGGACATGGCATCGGCCAC--AT-TATGAGAGCC
* * * *
42456074 AATGTAAGACCATATCCGGGACATGGCATCAACATT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATT
42456110 TTACCTTTTG
Statistics
Matches: 190, Mismatches: 34, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
95 3 0.02
96 146 0.77
97 3 0.02
98 37 0.19
99 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (96 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGATATGTGTGCCAATGTAAGACCATGTCT
GGGACATGGCATCGGCCACATTATGAGAGCC
Found at i:42456033 original size:144 final size:146
Alignment explanation
Indices: 42455786--42456104 Score: 405
Period size: 144 Copynumber: 2.2 Consensus size: 146
42455776 TGTGTGCTAG
* * ** * * *
42455786 TGTAAGACCATGTTTGGGACATGGCA-CTAGCGTTGATATGTGTGCTAGTGTAAGACCATGTTTG
1 TGTAAGACCATGTCTGGGACATGGCATC-AGCCTCAATATATGAGCCAGTGTAAGACCATGTTTG
* *
42455850 GGACATGGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC-C
65 GAACATGGCATCGGCCACATTATGAGAGCCAATGTAAGACCATGTCTGGGACATGGCATCGACAC
*
42455914 TCA-ATATGCGAGCCAA
130 TCATATATGAGAGCCAA
42455930 TGTAAGACCATGTCTGGGACATGGCATCAGCCTCAATATATGAGCCAGTGTAAGACCATGTTTGG
1 TGTAAGACCATGTCTGGGACATGGCATCAGCCTCAATATATGAGCCAGTGTAAGACCATGTTTGG
** * * *
42455995 AACATGGCATCGG-CATTGTTAT-ATGTGTCAATGTAAGACCATGTCTGGGACATGGCATCGGCA
66 AACATGGCATCGGCCA-CATTATGA-GAGCCAATGTAAGACCATGTCTGGGACATGGCATCGACA
* *
42456058 CTGATGTATGAGAGCCAA
129 CTCATATATGAGAGCCAA
* *
42456076 TGTAAGACCATATCCGGGACATGGCATCA
1 TGTAAGACCATGTCTGGGACATGGCATCA
42456105 ACATTTTACC
Statistics
Matches: 151, Mismatches: 19, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
143 3 0.02
144 106 0.70
145 4 0.03
146 38 0.25
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (146 bp):
TGTAAGACCATGTCTGGGACATGGCATCAGCCTCAATATATGAGCCAGTGTAAGACCATGTTTGG
AACATGGCATCGGCCACATTATGAGAGCCAATGTAAGACCATGTCTGGGACATGGCATCGACACT
CATATATGAGAGCCAA
Found at i:42460648 original size:25 final size:25
Alignment explanation
Indices: 42460620--42460714 Score: 163
Period size: 25 Copynumber: 3.8 Consensus size: 25
42460610 CTCTTTTAAT
*
42460620 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTTGGTA
*
42460645 AACTGGGGCAAAGCCCTTTTAGGTA
1 AACTGGGGCAAAGCCCTTTTTGGTA
42460670 AACTGGGGCAAAGCCCTTTTTGGTA
1 AACTGGGGCAAAGCCCTTTTTGGTA
*
42460695 AACTAGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
42460715 AGCACTTCCT
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 66 1.00
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTTGGTA
Found at i:42460650 original size:50 final size:50
Alignment explanation
Indices: 42460607--42460716 Score: 170
Period size: 50 Copynumber: 2.2 Consensus size: 50
42460597 CTGGAGGCCT
42460607 AGCCTCTTTTA-AT-AACTGGGGCAAAGCCCTTTTTGATAAACTGGGGCAA
1 AGCC-CTTTTAGATAAACTGGGGCAAAGCCCTTTTTGATAAACTGGGGCAA
* * *
42460656 AGCCCTTTTAGGTAAACTGGGGCAAAGCCCTTTTTGGTAAACTAGGGCAA
1 AGCCCTTTTAGATAAACTGGGGCAAAGCCCTTTTTGATAAACTGGGGCAA
42460706 AGCCCTTTTAG
1 AGCCCTTTTAG
42460717 CACTTCCTCC
Statistics
Matches: 56, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
48 6 0.11
49 5 0.09
50 45 0.80
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (50 bp):
AGCCCTTTTAGATAAACTGGGGCAAAGCCCTTTTTGATAAACTGGGGCAA
Found at i:42460949 original size:27 final size:27
Alignment explanation
Indices: 42460920--42461087 Score: 230
Period size: 27 Copynumber: 6.2 Consensus size: 27
42460910 GGGCAAAATG
* * * *
42460920 GTAATTTTACCCTACAAAGGTATCTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
42460947 GTAATTCTACCCTAC-AGGGATATTTCA
1 GTAATTCTACCCTACAAGGG-TATTTCA
*
42460974 GTAATTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
42461001 GTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
42461028 GTAATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
42461055 ATAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
42461082 ATAATT
1 GTAATT
42461088 TTGTAAATCG
Statistics
Matches: 127, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
26 3 0.02
27 120 0.94
28 4 0.03
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:42461002 original size:54 final size:54
Alignment explanation
Indices: 42460920--42461087 Score: 264
Period size: 54 Copynumber: 3.1 Consensus size: 54
42460910 GGGCAAAATG
* * * *
42460920 GTAATTTTACCCTACAAAGGTATCTCGGTAATTCTACCCTACAGGGATATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
*
42460974 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
**
42461028 GTAATTCTACCCTACAAGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
*
42461082 ATAATT
1 GTAATT
42461088 TTGTAAATCG
Statistics
Matches: 105, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 105 1.00
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Consensus pattern (54 bp):
GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
Found at i:42461180 original size:27 final size:27
Alignment explanation
Indices: 42461109--42461440 Score: 262
Period size: 27 Copynumber: 12.3 Consensus size: 27
42461099 GGATAAAATG
* * * * *
42461109 GTAATTCTATAAATCCAGGGTACTTTG
1 GTAATTTTACAAATCGAGGGTATTTTA
* *
42461136 GTAATTTTTACAAGTCGAGGGTATTTCA
1 GTAA-TTTTACAAATCGAGGGTATTTTA
*
42461164 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAGGGTATTTTA
* *
42461191 ATAATTTTACAAA-CTGAGGGTATTTCA
1 GTAATTTTACAAATC-GAGGGTATTTTA
* * * *
42461218 GTAATTTCACAAAT-TATGAGTATTTTG
1 GTAATTTTACAAATCGA-GGGTATTTTA
* *
42461245 GTAATTTTACAAA-CCAGGGGTATTTTG
1 GTAATTTTACAAATCGA-GGGTATTTTA
** * * * *
42461272 GTAATTTTTTAAACCAAGGGTACTTTG
1 GTAATTTTACAAATCGAGGGTATTTTA
* **
42461299 GTAATTTTACAAGTTAAGGGTATTTTA
1 GTAATTTTACAAATCGAGGGTATTTTA
* *
42461326 GTAATTTCACAAATC-AGAGGTATTTTG
1 GTAATTTTACAAATCGAG-GGTATTTTA
* * *
42461353 GTAATTTCACAAA-CTAGGGGTATTTTG
1 GTAATTTTACAAATCGA-GGGTATTTTA
*
42461380 GTAATTTTACAAA-CTAGGGGTATTTTA
1 GTAATTTTACAAATCGA-GGGTATTTTA
* *
42461407 GTAATTTTACAAATTGAGGGCATTTTA
1 GTAATTTTACAAATCGAGGGTATTTTA
42461434 GTAATTT
1 GTAATTT
42461441 GGTAAACTAA
Statistics
Matches: 256, Mismatches: 39, Indels: 20
0.81 0.12 0.06
Matches are distributed among these distances:
26 5 0.02
27 227 0.89
28 24 0.09
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAGGGTATTTTA
Found at i:42461221 original size:54 final size:54
Alignment explanation
Indices: 42461109--42461440 Score: 298
Period size: 54 Copynumber: 6.1 Consensus size: 54
42461099 GGATAAAATG
* * * * * *
42461109 GTAATTCTATAAATCCAGGGTACTTTGGTAATTTTTAC-AAGTCGAGGGTATTTCA
1 GTAATTTTACAAATCTAGGGTATTTTGGTAA-TTTTACAAACT-GAGGGTATTTTA
* *** *
42461164 GTAATTTTACAAATCGAGGGTATTTCAATAATTTTACAAACTGAGGGTATTTCA
1 GTAATTTTACAAATCTAGGGTATTTTGGTAATTTTACAAACTGAGGGTATTTTA
* * * *
42461218 GTAATTTCACAAAT-TATGAGTATTTTGGTAATTTTACAAAC-CAGGGGTATTTTG
1 GTAATTTTACAAATCTA-GGGTATTTTGGTAATTTTACAAACTGA-GGGTATTTTA
** * * * ** *
42461272 GTAATTTTTTAAACCAAGGGTACTTTGGTAATTTTACAAGTTAAGGGTATTTTA
1 GTAATTTTACAAATCTAGGGTATTTTGGTAATTTTACAAACTGAGGGTATTTTA
* * *
42461326 GTAATTTCACAAATC-AGAGGTATTTTGGTAATTTCACAAACT-AGGGGTATTTTG
1 GTAATTTTACAAATCTAG-GGTATTTTGGTAATTTTACAAACTGA-GGGTATTTTA
* * *
42461380 GTAATTTTACAAA-CTAGGGGTATTTTAGTAATTTTACAAATTGAGGGCATTTTA
1 GTAATTTTACAAATCTA-GGGTATTTTGGTAATTTTACAAACTGAGGGTATTTTA
42461434 GTAATTT
1 GTAATTT
42461441 GGTAAACTAA
Statistics
Matches: 224, Mismatches: 43, Indels: 21
0.78 0.15 0.07
Matches are distributed among these distances:
53 6 0.03
54 187 0.83
55 31 0.14
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.40
Consensus pattern (54 bp):
GTAATTTTACAAATCTAGGGTATTTTGGTAATTTTACAAACTGAGGGTATTTTA
Found at i:42461266 original size:81 final size:79
Alignment explanation
Indices: 42461107--42461420 Score: 306
Period size: 81 Copynumber: 3.9 Consensus size: 79
42461097 GAGGATAAAA
* * * * ** *
42461107 TGGTAATTCTATAAATCCAGGGTACTTTGGTAATTTTTACAAGTCGAGGGTATTTCAGTAATTTT
1 TGGTAATTTTACAAA-CTAGGGTA-TTTGGTAA-TTTTACAAATTAAGGGTATTTTAGTAATTTT
42461172 ACAAATC-GAGGGTATTT
63 ACAAATCAG-GGGTATTT
*** * * * * *
42461189 CAATAATTTTACAAACTGAGGGTATTTCAGTAATTTCACAAATTATGAGTATTTTGGTAATTTTA
1 TGGTAATTTTACAAACT-AGGGTATTT-GGTAATTTTACAAATTAAGGGTATTTTAGTAATTTTA
*
42461254 CAAACCAGGGGTATTT
64 CAAATCAGGGGTATTT
** * * *
42461270 TGGTAATTTTTTAAACCAAGGGTACTTTGGTAATTTTACAAGTTAAGGGTATTTTAGTAATTTCA
1 TGGTAATTTTACAAA-CTAGGGTA-TTTGGTAATTTTACAAATTAAGGGTATTTTAGTAATTTTA
*
42461335 CAAATCAGAGGTATTT
64 CAAATCAGGGGTATTT
* * *
42461351 TGGTAATTTCACAAACTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTA
1 TGGTAATTTTACAAACTA-GGGTA-TTTGGTAATTTTACAAATTAAGGGTATTTTAGTAATTTTA
42461416 CAAAT
64 CAAAT
42461421 TGAGGGCATT
Statistics
Matches: 186, Mismatches: 40, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
80 2 0.01
81 159 0.85
82 25 0.13
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.39
Consensus pattern (79 bp):
TGGTAATTTTACAAACTAGGGTATTTGGTAATTTTACAAATTAAGGGTATTTTAGTAATTTTACA
AATCAGGGGTATTT
Found at i:42462531 original size:30 final size:30
Alignment explanation
Indices: 42462496--42462553 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
42462486 CACGGCCATG
*
42462496 ACACACTGGCATGTG-GTCTACCCGTGTGTC
1 ACACACGGGCATGTGCGTC-ACCCGTGTGTC
* *
42462526 ACACACGGGCGTGTGCGTCACCTGTGTG
1 ACACACGGGCATGTGCGTCACCCGTGTG
42462554 GAAGTGCCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 21 0.88
31 3 0.12
ACGTcount: A:0.16, C:0.29, G:0.31, T:0.24
Consensus pattern (30 bp):
ACACACGGGCATGTGCGTCACCCGTGTGTC
Found at i:42464994 original size:56 final size:56
Alignment explanation
Indices: 42464908--42465025 Score: 227
Period size: 56 Copynumber: 2.1 Consensus size: 56
42464898 TTTTGCTATG
*
42464908 TTGGGACGGCAAGAGTTGGTGTTGAATTTAAACTCTGATGTTGGAGGGATCCCACA
1 TTGGGACGGAAAGAGTTGGTGTTGAATTTAAACTCTGATGTTGGAGGGATCCCACA
42464964 TTGGGACGGAAAGAGTTGGTGTTGAATTTAAACTCTGATGTTGGAGGGATCCCACA
1 TTGGGACGGAAAGAGTTGGTGTTGAATTTAAACTCTGATGTTGGAGGGATCCCACA
42465020 TTGGGA
1 TTGGGA
42465026 AGCTAACATA
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 61 1.00
ACGTcount: A:0.25, C:0.13, G:0.33, T:0.29
Consensus pattern (56 bp):
TTGGGACGGAAAGAGTTGGTGTTGAATTTAAACTCTGATGTTGGAGGGATCCCACA
Found at i:42465689 original size:27 final size:27
Alignment explanation
Indices: 42465423--42465687 Score: 386
Period size: 27 Copynumber: 9.8 Consensus size: 27
42465413 ATTACCAAAG
**
42465423 TACCCTCGATTTACAGAATTACTTTTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
42465450 TACCCTCAATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
42465477 TACCCTCGGTTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
42465504 TACCCTCAATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
42465531 TACCCTCGACTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
42465558 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
42465585 TACCCTCGACTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
42465612 TACCCTCGACTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* **
42465639 TACCCTCAATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
42465666 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
42465688 TGAAATACCC
Statistics
Matches: 214, Mismatches: 24, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 214 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:42465696 original size:27 final size:27
Alignment explanation
Indices: 42465639--42465729 Score: 101
Period size: 27 Copynumber: 3.4 Consensus size: 27
42465629 ATTACCATTT
* * ***
42465639 TACCCTCAATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGAAA
42465666 TACCCTCGATTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACTGAAA
* * **
42465693 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTGAAA
42465720 TACCCTCGAT
1 TACCCTCGAT
42465730 CAGTAAAATT
Statistics
Matches: 53, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.33
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTGAAA
Found at i:42465724 original size:54 final size:54
Alignment explanation
Indices: 42465666--42465900 Score: 208
Period size: 54 Copynumber: 4.4 Consensus size: 54
42465656 ATTACTGTTT
* ** **
42465666 TACCCTCGATTTACAAAATTACTGAAATACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
* *
42465720 TACCCTCGA-TCAGTAAAATTACCAAAATA-CCTCTGGTTTGTAAAATTACTAAAA
1 TACCCTCGATTTA-TAAAATTACCAAAATACCCT-TGGTTTGTAAAATTACCAAAA
* * * *
42465774 TACCC-CTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
* * * * * * * * *
42465828 TACCC-CTAGCTTGTAAAATTACCAAAATACCCCTGATTTATGAAATTATCGAAA
1 TACCCTCGA-TTTATAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
* *
42465882 TACTCTCGATTTGTAAAAT
1 TACCCTCGATTTATAAAAT
42465901 ATCGAAATAC
Statistics
Matches: 152, Mismatches: 23, Indels: 12
0.81 0.12 0.06
Matches are distributed among these distances:
53 7 0.05
54 140 0.92
55 5 0.03
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.31
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
Found at i:42465724 original size:81 final size:81
Alignment explanation
Indices: 42465477--42465726 Score: 232
Period size: 81 Copynumber: 3.1 Consensus size: 81
42465467 ATTACCGTTT
** * * * * **
42465477 TACCCTCGGTTTACAGAATTACCATTTTACCCTCAATTTATAGAATTACCATTTTACCCTCGACT
1 TACCCTCAATTTACAGAATTACCATTTTACCCTCGACTTACAAAATTACCATAATACCCTCGACT
* ***
42465542 TACAGAATTACCATTT
66 TACAAAATTACCAAAA
* * * **
42465558 TACCCTCGATTTATAGAATTACCATTTTACCCTCGACTTACAGAATTACCATTTTACCCTCGACT
1 TACCCTCAATTTACAGAATTACCATTTTACCCTCGACTTACAAAATTACCATAATACCCTCGACT
* ***
42465623 TACAGAATTACCATTT
66 TACAAAATTACCAAAA
** * * * **
42465639 TACCCTCAATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTGA-AATACCCTTGGT
1 TACCCTCAATTTACAGAATTACCATTTTACCCTCGACTTACAAAATTAC-CATAATACCCTCGAC
42465703 TTACAAAATTACCAAAA
65 TTACAAAATTACCAAAA
42465720 TACCCTC
1 TACCCTC
42465727 GATCAGTAAA
Statistics
Matches: 147, Mismatches: 21, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
81 146 0.99
82 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.07, T:0.35
Consensus pattern (81 bp):
TACCCTCAATTTACAGAATTACCATTTTACCCTCGACTTACAAAATTACCATAATACCCTCGACT
TACAAAATTACCAAAA
Found at i:42465737 original size:27 final size:26
Alignment explanation
Indices: 42465707--42465914 Score: 211
Period size: 27 Copynumber: 7.8 Consensus size: 26
42465697 CTTGGTTTAC
* **
42465707 AAAATTACCAAAATACCCTCGATCAGT
1 AAAATTACCAAAATACCC-CTATTTGT
* *
42465734 AAAATTACCAAAATACCTCTGGTTTGT
1 AAAATTACCAAAATACCCCT-ATTTGT
*
42465761 AAAATTACTAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTA-TTTGT
42465788 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTA-TTTGT
*
42465815 AAAATTACCAAAATACCCCTAGCTTGT
1 AAAATTACCAAAATACCCCTA-TTTGT
*
42465842 AAAATTACCAAAATACCCCTGATTTAT
1 AAAATTACCAAAATACCCCT-ATTTGT
* * * * *
42465869 GAAATTATCGAAATACTCTCGATTTGT
1 AAAATTACCAAAATAC-CCCTATTTGT
* *
42465896 AAAA-TATCGAAATACCCCT
1 AAAATTACCAAAATACCCCT
42465915 GTAGGATAGA
Statistics
Matches: 156, Mismatches: 21, Indels: 10
0.83 0.11 0.05
Matches are distributed among these distances:
25 2 0.01
26 12 0.08
27 139 0.89
28 3 0.02
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (26 bp):
AAAATTACCAAAATACCCCTATTTGT
Found at i:42465765 original size:81 final size:81
Alignment explanation
Indices: 42465680--42465914 Score: 276
Period size: 81 Copynumber: 2.9 Consensus size: 81
42465670 CTCGATTTAC
* * * **
42465680 AAAATTACTGAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAA
1 AAAATTACTAAAATACCCCTGGTTTATAAAATTACCAAAATACCCTCGATTTGTAAAATTACCAA
* * *
42465745 AATACCTCTGGTTTGT
66 AATACCCCTAGCTTGT
* * *
42465761 AAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCC-CTAGTTTGTAAAATTACCA
1 AAAATTACTAAAATACCCCTGGTTTATAAAATTACCAAAATACCCTCGA-TTTGTAAAATTACCA
42465825 AAATACCCCTAGCTTGT
65 AAATACCCCTAGCTTGT
* * * * * * * *
42465842 AAAATTACCAAAATACCCCTGATTTATGAAATTATCGAAATACTCTCGATTTGTAAAA-TATCGA
1 AAAATTACTAAAATACCCCTGGTTTATAAAATTACCAAAATACCCTCGATTTGTAAAATTACCAA
42465906 AATACCCCT
66 AATACCCCT
42465915 GTAGGATAGA
Statistics
Matches: 130, Mismatches: 22, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
80 15 0.12
81 113 0.87
82 2 0.02
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (81 bp):
AAAATTACTAAAATACCCCTGGTTTATAAAATTACCAAAATACCCTCGATTTGTAAAATTACCAA
AATACCCCTAGCTTGT
Found at i:42465938 original size:27 final size:26
Alignment explanation
Indices: 42465903--42466118 Score: 270
Period size: 27 Copynumber: 8.0 Consensus size: 26
42465893 TGTAAAATAT
*
42465903 CGAAATACCCCTGTAGGATAGAATTA
1 CGAAATACCCCTGTAGGGTAGAATTA
42465929 TCGAAATACCCCTGTAGGGTAGAATTA
1 -CGAAATACCCCTGTAGGGTAGAATTA
* * *
42465956 CTAAAAAACCCCAGTAGGGTAGAATTA
1 C-GAAATACCCCTGTAGGGTAGAATTA
*
42465983 CTGAAATAACCCTGTAGGGTAGAATTA
1 C-GAAATACCCCTGTAGGGTAGAATTA
*
42466010 CCGAAATACCCTTGTAGGGTAGAATTA
1 -CGAAATACCCCTGTAGGGTAGAATTA
42466037 CTGAAATACCCCTGTAGGGTAGAATTA
1 C-GAAATACCCCTGTAGGGTAGAATTA
*
42466064 CCGAAATACCCTTGTAGGGTAGAATTA
1 -CGAAATACCCCTGTAGGGTAGAATTA
* * * *
42466091 CTAAGATACCCTTGTGGGGTAAAATTA
1 CGAA-ATACCCCTGTAGGGTAGAATTA
42466118 C
1 C
42466119 CATTTTGCCC
Statistics
Matches: 169, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
26 5 0.03
27 162 0.96
28 2 0.01
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (26 bp):
CGAAATACCCCTGTAGGGTAGAATTA
Found at i:42465979 original size:54 final size:54
Alignment explanation
Indices: 42465903--42466119 Score: 303
Period size: 54 Copynumber: 4.0 Consensus size: 54
42465893 TGTAAAATAT
*
42465903 CGAAATACCCCTGTAGGATAGAATTA-TCGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTACT-GAAATACCCCTGTAGGGTAGAATTAC
** * * *
42465957 TAAAAAACCCCAGTAGGGTAGAATTACTGAAATAACCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTAC
*
42466011 CGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTAC
* * * *
42466065 CGAAATACCCTTGTAGGGTAGAATTACT-AAGATACCCTTGTGGGGTAAAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTACTGAA-ATACCCCTGTAGGGTAGAATTAC
42466119 C
1 C
42466120 ATTTTGCCCC
Statistics
Matches: 146, Mismatches: 15, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
53 2 0.01
54 143 0.98
55 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.25
Consensus pattern (54 bp):
CGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTAC
Found at i:42466007 original size:81 final size:80
Alignment explanation
Indices: 42465903--42466118 Score: 299
Period size: 81 Copynumber: 2.7 Consensus size: 80
42465893 TGTAAAATAT
* * *
42465903 CGAAATACCCCTGTAGGATAGAATTATCGAAATACCCCTGTAGGGTAGAATTACTAAAAAACCCC
1 CGAAATAACCCTGTAGGGTAGAATTA-CGAAATACCCTTGTAGGGTAGAATTACTAAAAAACCCC
42465968 AGTAGGGTAGAATTAC
65 AGTAGGGTAGAATTAC
* * *
42465984 TGAAATAACCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCC
1 CGAAATAACCCTGTAGGGTAGAATTA-CGAAATACCCTTGTAGGGTAGAATTACTAAAAAACCCC
*
42466049 TGTAGGGTAGAATTAC
65 AGTAGGGTAGAATTAC
* * *
42466065 CGAAAT-ACCCTTGTAGGGTAGAATTACTAAGATACCCTTGTGGGGTAAAATTAC
1 CGAAATAACCC-TGTAGGGTAGAATTACGAA-ATACCCTTGTAGGGTAGAATTAC
42466119 CATTTTGCCC
Statistics
Matches: 121, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
80 7 0.06
81 114 0.94
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (80 bp):
CGAAATAACCCTGTAGGGTAGAATTACGAAATACCCTTGTAGGGTAGAATTACTAAAAAACCCCA
GTAGGGTAGAATTAC
Found at i:42466398 original size:24 final size:25
Alignment explanation
Indices: 42466323--42466391 Score: 111
Period size: 25 Copynumber: 2.8 Consensus size: 25
42466313 GGAAGTGCTG
* * *
42466323 AAAGGGCTATGCCCCAGTTTACCGA
1 AAAGGGCTTTGCCCCAGTTTATCAA
42466348 AAAGGGCTTTGCCCCAGTTTATCAA
1 AAAGGGCTTTGCCCCAGTTTATCAA
42466373 AAAGGGCTTTGCCCCAGTT
1 AAAGGGCTTTGCCCCAGTT
42466392 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (25 bp):
AAAGGGCTTTGCCCCAGTTTATCAA
Found at i:42466404 original size:24 final size:24
Alignment explanation
Indices: 42466323--42466418 Score: 81
Period size: 25 Copynumber: 3.9 Consensus size: 24
42466313 GGAAGTGCTG
* *
42466323 AAAG-GGCTATGCCCCAGTTTACCGA
1 AAAGAGGCTTTGCCCCAG-TTATC-A
42466348 AAAG-GGCTTTGCCCCAGTTTATCA
1 AAAGAGGCTTTGCCCCAG-TTATCA
*
42466372 AAA-AGGGCTTTGCCCCAGTTATTA
1 AAAGA-GGCTTTGCCCCAGTTATCA
**
42466396 AAAGAGGCTAGGCCTCCAGTTAT
1 AAAGAGGCTTTGCC-CCAGTTAT
42466419 ATGATAAAGT
Statistics
Matches: 62, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
24 19 0.31
25 43 0.69
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (24 bp):
AAAGAGGCTTTGCCCCAGTTATCA
Found at i:42468328 original size:40 final size:40
Alignment explanation
Indices: 42468284--42468467 Score: 282
Period size: 40 Copynumber: 4.6 Consensus size: 40
42468274 GCTACTTGCT
*
42468284 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
42468324 CAAATGCCTTTGGGACTTAGCCGGGATATAGTACCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
42468364 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
42468404 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
42468443 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
42468468 TTATCATCCA
Statistics
Matches: 132, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
38 1 0.01
39 34 0.26
40 97 0.73
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:42476377 original size:40 final size:40
Alignment explanation
Indices: 42476333--42476516 Score: 266
Period size: 40 Copynumber: 4.6 Consensus size: 40
42476323 GCTACTTGCT
* * *
42476333 CAAATGCCTTCGGGACTTAGCTCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACA
*
42476373 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACA
*
42476413 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACA
* *
42476453 CAAATGCCTTCGGG-CTTAGCCC-GAAATTAGTCACT-AGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCA-CA
42476492 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
42476517 TTATCATCCA
Statistics
Matches: 133, Mismatches: 7, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
38 4 0.03
39 30 0.23
40 98 0.74
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACA
Found at i:42479828 original size:20 final size:20
Alignment explanation
Indices: 42479772--42479828 Score: 96
Period size: 20 Copynumber: 2.9 Consensus size: 20
42479762 ACATGGTTGA
*
42479772 TATGATATGCACATGACATG
1 TATGATATGCACATGATATG
42479792 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
*
42479812 TATGAAATGCACATGAT
1 TATGATATGCACATGAT
42479829 GTATTCATAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.32
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:42479949 original size:25 final size:26
Alignment explanation
Indices: 42479878--42479986 Score: 156
Period size: 26 Copynumber: 4.3 Consensus size: 26
42479868 GAGGAAGTGC
*
42479878 AAAATGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
42479904 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
42479930 AAAAGGGCTT-TGCCCCAGTTTA-TC
1 AAAAGGGCTTATGCCCCAGTTTATTG
42479954 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
42479977 AAAAGAGGCT
1 AAAAG-GGCT
42479987 AGGCCTCCAG
Statistics
Matches: 79, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
23 8 0.10
24 24 0.30
25 12 0.15
26 35 0.44
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:42480577 original size:18 final size:18
Alignment explanation
Indices: 42480554--42480588 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
42480544 ACTTAGGACG
*
42480554 TGTTTTCAAAACGACACT
1 TGTTTTCAAAACAACACT
*
42480572 TGTTTTCCAAACAACAC
1 TGTTTTCAAAACAACAC
42480589 AACGTTACGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.26, G:0.09, T:0.31
Consensus pattern (18 bp):
TGTTTTCAAAACAACACT
Found at i:42486508 original size:25 final size:27
Alignment explanation
Indices: 42486479--42486530 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 27
42486469 TAGCCGAATT
42486479 GAGGGG-TTAGAGAGGGA-TTTCGGCA
1 GAGGGGTTTAGAGAGGGATTTTCGGCA
**
42486504 GAGGGGTTTAGTTAGGGATTTTCGGCA
1 GAGGGGTTTAGAGAGGGATTTTCGGCA
42486531 TTAGGTCTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 6 0.26
26 9 0.39
27 8 0.35
ACGTcount: A:0.21, C:0.08, G:0.44, T:0.27
Consensus pattern (27 bp):
GAGGGGTTTAGAGAGGGATTTTCGGCA
Found at i:42487671 original size:24 final size:24
Alignment explanation
Indices: 42487643--42487688 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
42487633 TATAATATGG
*
42487643 AAATGACTATT-TACCCCTAGGTAA
1 AAATGACCATTATA-CCCTAGGTAA
42487667 AAATGACCATTATACCCTAGGT
1 AAATGACCATTATACCCTAGGT
42487689 TTACTTATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 18 0.90
25 2 0.10
ACGTcount: A:0.37, C:0.22, G:0.13, T:0.28
Consensus pattern (24 bp):
AAATGACCATTATACCCTAGGTAA
Found at i:42487756 original size:20 final size:20
Alignment explanation
Indices: 42487731--42487782 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
42487721 ACATGGTTGA
42487731 ATATGCACATGACATGTATG
1 ATATGCACATGACATGTATG
*
42487751 ATATGCACATGATATGTATG
1 ATATGCACATGACATGTATG
*
42487771 AAATGCACATGA
1 ATATGCACATGA
42487783 TGTATTCATA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.29
Consensus pattern (20 bp):
ATATGCACATGACATGTATG
Found at i:42498823 original size:39 final size:39
Alignment explanation
Indices: 42498738--42498918 Score: 249
Period size: 39 Copynumber: 4.6 Consensus size: 39
42498728 AAGTGAATAT
*
42498738 ATCCGGATTAAGATCCGAAGGCATTCGTGCGAGTTATTAA
1 ATCCGGGTTAAG-TCCGAAGGCATTCGTGCGAGTTATTAA
42498778 AT-CGGGTTAAGTCCGAAGGCATTCGTGCGAGTTATTAA
1 ATCCGGGTTAAGTCCGAAGGCATTCGTGCGAGTTATTAA
*
42498816 ATCCGGGTTAAGTCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCGAAGGCATTCGTGCGAGTTATTAA
* * *
42498855 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAA
1 ATCCGGGTTAAGT-CCGAAGGCATTCGTGCGAGTTATTAA
* * *
42498894 AACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGT-CCGAAGGCATT
42498919 TGAACGAGGA
Statistics
Matches: 131, Mismatches: 8, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
38 29 0.22
39 89 0.68
40 13 0.10
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (39 bp):
ATCCGGGTTAAGTCCGAAGGCATTCGTGCGAGTTATTAA
Found at i:42498938 original size:79 final size:78
Alignment explanation
Indices: 42498775--42498952 Score: 191
Period size: 78 Copynumber: 2.3 Consensus size: 78
42498765 TGCGAGTTAT
* * *
42498775 TAAAT-CGGGTTAAGTCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCGAAGGCAT
1 TAAATCCGGGTTAAGTCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCGAAGGCAT
** ** *
42498839 TCGTGCGAGTTGT
66 TCGAACGAGGAGC
* * *
42498852 TAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGC
1 TAAATCCGGGTTAAGT-CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGT-CCGAAGGC
*
42498916 ATTTGAACGAGGAGC
64 ATTCGAACGAGGAGC
* *
42498931 TATATCC-GGTTAAATCCGAAGG
1 TAAATCCGGGTTAAGTCCGAAGG
42498953 TACGTGATTT
Statistics
Matches: 83, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
77 12 0.14
78 37 0.45
79 34 0.41
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (78 bp):
TAAATCCGGGTTAAGTCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCGAAGGCAT
TCGAACGAGGAGC
Found at i:42506780 original size:39 final size:40
Alignment explanation
Indices: 42506576--42506798 Score: 281
Period size: 40 Copynumber: 5.6 Consensus size: 40
42506566 TTGAATGCTG
* * * * * *
42506576 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
*
42506616 TCCGGATTAAGAT-CCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
42506656 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
42506696 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
42506736 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
42506775 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
42506799 TGAACGAGGA
Statistics
Matches: 165, Mismatches: 15, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
39 35 0.21
40 123 0.75
41 7 0.04
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:42506818 original size:79 final size:80
Alignment explanation
Indices: 42506652--42506833 Score: 224
Period size: 79 Copynumber: 2.3 Consensus size: 80
42506642 TGCGAGTTAT
* * *
42506652 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
** ** *
42506717 ATTCGTGCGAGTTGT
66 ATTCGAACGAGGAGC
* * *
42506732 TAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
*
42506796 ATTTGAACGAGGAGC
66 ATTCGAACGAGGAGC
* *
42506811 TATATCC-GGTTAAATCCCGAAGG
1 TAAATCCGGGTTAAGTCCCGAAGG
42506834 TACGTGATTT
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
ATTCGAACGAGGAGC
Found at i:42510304 original size:54 final size:54
Alignment explanation
Indices: 42510236--42510423 Score: 175
Period size: 55 Copynumber: 3.5 Consensus size: 54
42510226 GATAAGGATC
* * *
42510236 TCATGTAAGACCATGCCAAGGTATGGCATTGATAAGTTTTATAAGGCAAGGAAA
1 TCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTTAATAAGGCAAGGAAA
* * * * **
42510290 TCATGTAAGACCATGTCAAGACATGGCATTGATGACTTACAATAAGGCAAAGG-CC
1 TCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTT-TAATAAGGC-AAGGAAA
* * *
42510345 CCATGTAAGACCATGCCAAGGCATGGCATT-AGTGAG-TTCATAAGGCAAGGATA
1 TCATGTAAGACCATGCCAAGGCATGGCATTGA-TGAGTTTAATAAGGCAAGGAAA
* ** * *
42510398 CCACATAAGACCATGTCAAGACATGG
1 TCATGTAAGACCATGCCAAGGCATGG
42510424 AAATGGTAAG
Statistics
Matches: 109, Mismatches: 21, Indels: 9
0.78 0.15 0.06
Matches are distributed among these distances:
52 4 0.04
53 29 0.27
54 35 0.32
55 37 0.34
56 4 0.04
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.22
Consensus pattern (54 bp):
TCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTTAATAAGGCAAGGAAA
Found at i:42516064 original size:48 final size:48
Alignment explanation
Indices: 42515993--42516165 Score: 192
Period size: 48 Copynumber: 3.6 Consensus size: 48
42515983 TAAAATGCCA
*
42515993 ATGCCATATCCCAGACATGGTCTTACACTGGCTCAT-ATGTCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATAATGTC-AGGCCG
** ** * *
42516041 ATGCCATGTCTGAGACATGGTCTTACACTGGCTC-TCGTCTCAATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATAATGTC-AGGCCG
* * *
42516089 ATGCCATGTCCCAGACATGGTCCTGCACTGGCTCTCATAATGT--GGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGG--CTCATAATGTCAGGCCG
42516137 ATGCCATGTCCCAGACATGGTCTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
42516166 AGCACACATA
Statistics
Matches: 103, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
47 1 0.01
48 96 0.93
50 3 0.03
51 3 0.03
ACGTcount: A:0.21, C:0.30, G:0.22, T:0.27
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATAATGTCAGGCCG
Found at i:42516153 original size:96 final size:94
Alignment explanation
Indices: 42515986--42516165 Score: 245
Period size: 96 Copynumber: 1.9 Consensus size: 94
42515976 AAGAGGGTAA
* *
42515986 AATGCCAATGCCATATCCCAGACATGGTCTTACACTGGCTCATATGTCGAGGCCGATGCCATGTC
1 AATGCCAATGCCATATCCCAGACATGGTCCTACACTGGCTCATATGT--AGGCCAATGCCATGTC
**
42516051 TGAGACATGGTCTTACACTGGCTCTCGTCTC
64 CCAGACATGGTCTTACACTGGCTCTCGTCTC
* * *
42516082 AATGCCGATGCCATGTCCCAGACATGGTCCTGCACTGGCTCTCATAATGT-GGCCAATGCCATGT
1 AATGCCAATGCCATATCCCAGACATGGTCCTACACTGG--CTCAT-ATGTAGGCCAATGCCATGT
42516146 CCCAGACATGGTCTTACACT
63 CCCAGACATGGTCTTACACT
42516166 AGCACACATA
Statistics
Matches: 74, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
96 65 0.88
98 5 0.07
99 4 0.05
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.26
Consensus pattern (94 bp):
AATGCCAATGCCATATCCCAGACATGGTCCTACACTGGCTCATATGTAGGCCAATGCCATGTCCC
AGACATGGTCTTACACTGGCTCTCGTCTC
Found at i:42519635 original size:37 final size:37
Alignment explanation
Indices: 42519584--42519684 Score: 121
Period size: 37 Copynumber: 2.7 Consensus size: 37
42519574 TGTTTACTTG
*
42519584 ATGCCATAGTCCAACTATGGTCTTACACAAAATCAAA
1 ATGCCATAGCCCAACTATGGTCTTACACAAAATCAAA
**** * **
42519621 ATGCCATAGCCCAACTATGGTCTTACATGCCATTACG
1 ATGCCATAGCCCAACTATGGTCTTACACAAAATCAAA
*
42519658 ATGCCATAGCCCAGCTATGGTCTTACA
1 ATGCCATAGCCCAACTATGGTCTTACA
42519685 TGCCATTACG
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 55 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.26
Consensus pattern (37 bp):
ATGCCATAGCCCAACTATGGTCTTACACAAAATCAAA
Found at i:42519685 original size:37 final size:37
Alignment explanation
Indices: 42519621--42519727 Score: 187
Period size: 37 Copynumber: 2.9 Consensus size: 37
42519611 CAAAATCAAA
*
42519621 ATGCCATAGCCCAACTATGGTCTTACATGCCATTACG
1 ATGCCATAGCCCAGCTATGGTCTTACATGCCATTACG
42519658 ATGCCATAGCCCAGCTATGGTCTTACATGCCATTACG
1 ATGCCATAGCCCAGCTATGGTCTTACATGCCATTACG
* *
42519695 ATGCCATAGCCTAGCTATGGTCTTACATTCCAT
1 ATGCCATAGCCCAGCTATGGTCTTACATGCCAT
42519728 ACTTTGCCAT
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (37 bp):
ATGCCATAGCCCAGCTATGGTCTTACATGCCATTACG
Found at i:42519767 original size:74 final size:74
Alignment explanation
Indices: 42519583--42519755 Score: 177
Period size: 74 Copynumber: 2.4 Consensus size: 74
42519573 TTGTTTACTT
* * *** * **
42519583 GATGCCATAGTCCAACTATGGTCTTACACAAAATCAAAATGCCATAGCCCAACTATGGTCTTACA
1 GATGCCATAGCCCAACCATGGTCTTACATGCAATTACGATGCCATAGCCCAACTATGGTCTTACA
42519648 TGCCATTAC
66 TGCCATTAC
* * * * *
42519657 GATGCCATAGCCCAGCTATGGTCTTACATGCCATTACGATGCCATAGCCTAGCTATGGTCTTACA
1 GATGCCATAGCCCAACCATGGTCTTACATGCAATTACGATGCCATAGCCCAACTATGGTCTTACA
*
42519722 TTCCA-TAC
66 TGCCATTAC
** * *
42519730 TTTGCCATGGTCCAACCATGGTCTTA
1 GATGCCATAGCCCAACCATGGTCTTA
42519756 TCCGTCAATT
Statistics
Matches: 81, Mismatches: 18, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
73 23 0.28
74 58 0.72
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (74 bp):
GATGCCATAGCCCAACCATGGTCTTACATGCAATTACGATGCCATAGCCCAACTATGGTCTTACA
TGCCATTAC
Found at i:42523383 original size:20 final size:20
Alignment explanation
Indices: 42523360--42523539 Score: 182
Period size: 20 Copynumber: 9.0 Consensus size: 20
42523350 GATTGTGGAC
* *
42523360 CTACTGATGGGTTTGTGCCG
1 CTACTGATGGCTTTGTGCCA
* *
42523380 CTACAGATGGATTTGTGCCA
1 CTACTGATGGCTTTGTGCCA
* * * *
42523400 TTATTGATTG-TTGTGTACCA
1 CTACTGATGGCTT-TGTGCCA
* *
42523420 CTATTGATGGCTTTGTGCCG
1 CTACTGATGGCTTTGTGCCA
* *
42523440 CTATTGATGTCTTTGTGCCA
1 CTACTGATGGCTTTGTGCCA
*
42523460 CTACTGATGGCTTTGTGCCG
1 CTACTGATGGCTTTGTGCCA
*
42523480 CTATTGATGGCTTTGTGCCA
1 CTACTGATGGCTTTGTGCCA
* * *
42523500 CTACTGACGGCTTCGTGCCG
1 CTACTGATGGCTTTGTGCCA
*
42523520 CTACTCATGGCTTTGTGCCA
1 CTACTGATGGCTTTGTGCCA
42523540 TATATTGATA
Statistics
Matches: 131, Mismatches: 27, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
19 2 0.02
20 127 0.97
21 2 0.02
ACGTcount: A:0.14, C:0.22, G:0.26, T:0.37
Consensus pattern (20 bp):
CTACTGATGGCTTTGTGCCA
Found at i:42523530 original size:40 final size:40
Alignment explanation
Indices: 42523364--42523539 Score: 210
Period size: 40 Copynumber: 4.4 Consensus size: 40
42523354 GTGGACCTAC
* * * * **
42523364 TGATGGGTTTGTGCCGCTACAGATGGATTTGTGCCATTAT
1 TGATGGCTTTGTGCCACTACTGATGGCTTTGTGCCGCTAT
* * *
42523404 TGATTG-TTGTGTACCACTATTGATGGCTTTGTGCCGCTAT
1 TGATGGCTT-TGTGCCACTACTGATGGCTTTGTGCCGCTAT
*
42523444 TGATGTCTTTGTGCCACTACTGATGGCTTTGTGCCGCTAT
1 TGATGGCTTTGTGCCACTACTGATGGCTTTGTGCCGCTAT
* * *
42523484 TGATGGCTTTGTGCCACTACTGACGGCTTCGTGCCGCTAC
1 TGATGGCTTTGTGCCACTACTGATGGCTTTGTGCCGCTAT
*
42523524 TCATGGCTTTGTGCCA
1 TGATGGCTTTGTGCCA
42523540 TATATTGATA
Statistics
Matches: 117, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
39 2 0.02
40 113 0.97
41 2 0.02
ACGTcount: A:0.14, C:0.22, G:0.27, T:0.38
Consensus pattern (40 bp):
TGATGGCTTTGTGCCACTACTGATGGCTTTGTGCCGCTAT
Found at i:42523592 original size:26 final size:26
Alignment explanation
Indices: 42523541--42523597 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
42523531 TTTGTGCCAT
*
42523541 ATATTGATACTAGTAGCTTTATTGCG
1 ATATTGATACTAGTAGCTTTACTGCG
* * * *
42523567 TTATTGTTACTGGTAGCTTTGCTGCG
1 ATATTGATACTAGTAGCTTTACTGCG
42523593 ATATT
1 ATATT
42523598 AGTGTGCTGG
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.21, C:0.12, G:0.21, T:0.46
Consensus pattern (26 bp):
ATATTGATACTAGTAGCTTTACTGCG
Found at i:42526253 original size:27 final size:27
Alignment explanation
Indices: 42526223--42526400 Score: 160
Period size: 27 Copynumber: 6.6 Consensus size: 27
42526213 ATATTGAGCC
* *
42526223 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
42526250 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
42526277 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
42526305 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
42526332 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
42526359 CGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
42526386 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
42526401 GTACAATTTA
Statistics
Matches: 124, Mismatches: 24, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:42526362 original size:82 final size:81
Alignment explanation
Indices: 42526244--42526399 Score: 206
Period size: 82 Copynumber: 1.9 Consensus size: 81
42526234 TGCTATATAA
* * * *
42526244 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCA-AATCGCA
42526309 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
42526326 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTGAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCA
*
42526390 CCCTTAGTGC
65 CACTTAGTGC
42526400 TGTACAATTT
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 17 0.27
82 47 0.73
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:42532370 original size:48 final size:48
Alignment explanation
Indices: 42532294--42532468 Score: 192
Period size: 48 Copynumber: 3.6 Consensus size: 48
42532284 GGTAAAATGC
* * * * *
42532294 CGATGCCCTGTCCCAGACATGGTTTTACATTGGCTCACATGTCGAGG-
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGAGGT
* * * * * *
42532341 CTGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCGTCTCAATGT
1 C-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGAGGT
* *
42532390 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAAT-GTGGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATCGAGGT
*
42532438 CGATGCCATGTCCCATACATGGTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
42532469 AGCACACATA
Statistics
Matches: 105, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
47 1 0.01
48 102 0.97
49 2 0.02
ACGTcount: A:0.21, C:0.29, G:0.21, T:0.30
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGAGGT
Found at i:42532458 original size:96 final size:96
Alignment explanation
Indices: 42532289--42532471 Score: 253
Period size: 96 Copynumber: 1.9 Consensus size: 96
42532279 AAGAGGGTAA
* * * *
42532289 AATGCCGATGCCCTGTCCCAGACATGGTTTTACATTGGCTCACATGTCGAGGCTGATGCCATGTC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAGGCTGATGCCATGTC
42532354 CCAAACATGGTCTTACACTAGCTCTCGTCTC
66 CCAAACATGGTCTTACACTAGCTCTCGTCTC
* * * *
42532385 AATGTCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAAT-GTGG-TCGATGCCATG
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-ATCGAGGCT-GATGCCATG
*
42532448 TCCCATACATGGTCTTACACTAGC
64 TCCCAAACATGGTCTTACACTAGC
42532472 ACACATATCA
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
95 1 0.01
96 74 0.97
97 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (96 bp):
AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAGGCTGATGCCATGTC
CCAAACATGGTCTTACACTAGCTCTCGTCTC
Found at i:42545264 original size:20 final size:20
Alignment explanation
Indices: 42545241--42545282 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
42545231 CATTTTTCTC
42545241 TCTTCATTCCCTTCCATTAT
1 TCTTCATTCCCTTCCATTAT
** *
42545261 TCTTCATTTTCTTCCTTTAT
1 TCTTCATTCCCTTCCATTAT
42545281 TC
1 TC
42545283 CTTTGTCGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.12, C:0.31, G:0.00, T:0.57
Consensus pattern (20 bp):
TCTTCATTCCCTTCCATTAT
Found at i:42561277 original size:25 final size:25
Alignment explanation
Indices: 42561244--42561310 Score: 100
Period size: 25 Copynumber: 2.7 Consensus size: 25
42561234 AATCAAAATG
* *
42561244 AGAATTAGAATCAGAATCAGGTGAC
1 AGAATTAGAATCAGAATCAAGTAAC
42561269 AGAATTAGAATCA-ATATCAAGTAAC
1 AGAATTAGAATCAGA-ATCAAGTAAC
42561294 AGAATTAGAATCAGAAT
1 AGAATTAGAATCAGAAT
42561311 GTGAATGCAA
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
24 1 0.03
25 36 0.95
26 1 0.03
ACGTcount: A:0.49, C:0.10, G:0.18, T:0.22
Consensus pattern (25 bp):
AGAATTAGAATCAGAATCAAGTAAC
Found at i:42561472 original size:26 final size:26
Alignment explanation
Indices: 42561395--42561474 Score: 97
Period size: 26 Copynumber: 3.0 Consensus size: 26
42561385 AGCATGGCTG
* *
42561395 CCAGAATAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
*
42561421 CCAGATACAGATATTGTAACAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
* * *
42561448 CCAGAACAGATAATGTGGCAAAGCCA
1 CCAGAACAGATATTGTGACAGAGCCA
42561474 C
1 C
42561475 TTAACAGAAT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
26 23 0.50
27 23 0.50
ACGTcount: A:0.40, C:0.21, G:0.21, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:42562778 original size:27 final size:27
Alignment explanation
Indices: 42562124--42562771 Score: 857
Period size: 27 Copynumber: 24.0 Consensus size: 27
42562114 GGGGCAAAAT
* * *
42562124 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
42562151 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * * *
42562178 GGTAATTCTATCTTATAGGGGCATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
42562205 AGTAATTCTACTCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
42562232 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * ** *
42562259 GGTATTTCTATCCTACTGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
42562286 AGTAATTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
42562313 GGTATTTCTACCTTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
42562340 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
42562367 GGTAATTCTACCCTA-AAGGGGTATTTT
1 GGTAATTCTACCCTACAA-GGGTATTTC
*
42562394 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
42562421 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
42562448 GGGAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
42562475 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
42562502 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
42562529 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
42562556 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
42562583 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
42562610 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
42562637 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
42562664 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** *
42562691 GACATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
42562718 AGTATTTTTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
42562745 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
42562772 AATAATTTTG
Statistics
Matches: 552, Mismatches: 67, Indels: 4
0.89 0.11 0.01
Matches are distributed among these distances:
26 2 0.00
27 548 0.99
28 2 0.00
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:42562793 original size:27 final size:27
Alignment explanation
Indices: 42562763--42563079 Score: 237
Period size: 27 Copynumber: 11.8 Consensus size: 27
42562753 TACCCTACAG
** **
42562763 GGGTATTTCAATAATTTTGTAAATTGA
1 GGGTATTTCGGTAATTTTACAAATTGA
*** * **
42562790 GGGTAAAACGGTAATTCTGTAAATTGA
1 GGGTATTTCGGTAATTTTACAAATTGA
* * *
42562817 GGGTACTTT-GATAATTTTACAAGTCGA
1 GGGTA-TTTCGGTAATTTTACAAATTGA
* *
42562844 GGGTATTTCAGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATTGA
* * * *
42562871 AGGTATTTCAGTAATTTTGCAAACTGA
1 GGGTATTTCGGTAATTTTACAAATTGA
42562898 GGGTATTTCGGTAATTTTACAAATTGA
1 GGGTATTTCGGTAATTTTACAAATTGA
** **
42562925 GGGTATTTCAATAATTTTAC-AATAAA
1 GGGTATTTCGGTAATTTTACAAATTGA
* * *
42562951 TGATATTTCGATAATTTTACAAATTGA
1 GGGTATTTCGGTAATTTTACAAATTGA
*
42562978 GGGTATTTCGGTAATTTTAC-AATCGA
1 GGGTATTTCGGTAATTTTACAAATTGA
*** * *
42563004 CCATATTTCAGTAATTTTACAAATTAA
1 GGGTATTTCGGTAATTTTACAAATTGA
* * * * ** *
42563031 GGATATTTGGGTAGTTTTATAAACCGG
1 GGGTATTTCGGTAATTTTACAAATTGA
42563058 GGGTACTTT-GGTAATTTTACAA
1 GGGTA-TTTCGGTAATTTTACAA
42563080 CTGGGGGTAT
Statistics
Matches: 227, Mismatches: 58, Indels: 10
0.77 0.20 0.03
Matches are distributed among these distances:
26 45 0.20
27 179 0.79
28 3 0.01
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAATTGA
Found at i:42562995 original size:80 final size:80
Alignment explanation
Indices: 42562814--42563100 Score: 289
Period size: 80 Copynumber: 3.6 Consensus size: 80
42562804 TTCTGTAAAT
* * * *
42562814 TGAGGGTACTTTGATAATTTTACAAGTCGAGGGTATTTCAGTAATTTTACAAATCGAAGGTATTT
1 TGAGGGTACTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAAT-AAAGATATTT
*
42562879 C-AGTAATTTTGCAAAC
65 CGA-TAATTTTACAAAC
* *
42562895 TGAGGGTA-TTTCGGTAATTTTACAAATTGAGGGTATTTCAATAATTTTAC-AATAAATGATATT
1 TGAGGGTACTTT-GGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATAAA-GATATT
*
42562958 TCGATAATTTTACAAAT
64 TCGATAATTTTACAAAC
*** *
42562975 TGAGGGTA-TTTCGGTAATTTTAC-AATCGACCATATTTCAGTAATTTTACAAATTAAGGATATT
1 TGAGGGTACTTT-GGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAA-TAAAGATATT
* * * *
42563038 TGGGTAGTTTTATAAAC
64 TCGATAATTTTACAAAC
* * * * *
42563055 CGGGGGTACTTTGGTAATTTTACAACT-GGGGGTATTTTAGTAATTT
1 TGAGGGTACTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTT
42563101 GGTAAACTAA
Statistics
Matches: 172, Mismatches: 27, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
79 23 0.13
80 98 0.57
81 51 0.30
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (80 bp):
TGAGGGTACTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATAAAGATATTTC
GATAATTTTACAAAC
Found at i:42563049 original size:53 final size:53
Alignment explanation
Indices: 42562810--42563038 Score: 221
Period size: 53 Copynumber: 4.3 Consensus size: 53
42562800 GTAATTCTGT
* * * *
42562810 AAATTGAGGGTACTTTGA-TAATTTTACAAGTCGAGGGTATTTCAGTAATTTTAC
1 AAATTAAGGGTA-TTTCAGTAATTTTACAA-TCGACGATATTTCAGTAATTTTAC
* * * * * *
42562864 AAATCGAA-GGTATTTCAGTAATTTTGCAAACTGAGGGTATTTCGGTAATTTTAC
1 AAAT-TAAGGGTATTTCAGTAATTTTACAATC-GACGATATTTCAGTAATTTTAC
* * ** *
42562918 AAATTGAGGGTATTTCAATAATTTTACAATAAATGATATTTC-GATAATTTTAC
1 AAATTAAGGGTATTTCAGTAATTTTACAATCGACGATATTTCAG-TAATTTTAC
* * *
42562971 AAATTGAGGGTATTTCGGTAATTTTACAATCGACCATATTTCAGTAATTTTAC
1 AAATTAAGGGTATTTCAGTAATTTTACAATCGACGATATTTCAGTAATTTTAC
*
42563024 AAATTAAGGATATTT
1 AAATTAAGGGTATTT
42563039 GGGTAGTTTT
Statistics
Matches: 146, Mismatches: 23, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
52 1 0.01
53 81 0.55
54 63 0.43
55 1 0.01
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (53 bp):
AAATTAAGGGTATTTCAGTAATTTTACAATCGACGATATTTCAGTAATTTTAC
Found at i:42565127 original size:25 final size:25
Alignment explanation
Indices: 42565093--42565159 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
42565083 AATCAAAATG
* *
42565093 AGAATTAGAATCAGAATCAGGTGAC
1 AGAATTAGAATTAGAATCAGGTAAC
* *
42565118 AGAATCAGAATTA-ATATCAGGTAAT
1 AGAATTAGAATTAGA-ATCAGGTAAC
42565143 AGAATTAGAATTAGAAT
1 AGAATTAGAATTAGAAT
42565160 GTGAATGCGA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
24 1 0.03
25 33 0.94
26 1 0.03
ACGTcount: A:0.48, C:0.07, G:0.19, T:0.25
Consensus pattern (25 bp):
AGAATTAGAATTAGAATCAGGTAAC
Found at i:42565551 original size:22 final size:22
Alignment explanation
Indices: 42565515--42565580 Score: 64
Period size: 22 Copynumber: 3.0 Consensus size: 22
42565505 GCAAATACGT
42565515 TTGGCACACAA-CCATAATCAGA
1 TTGGCACA-AAGCCATAATCAGA
* * *
42565537 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGA
*
42565559 TTGGCGCAAAGCCATAATCAGA
1 TTGGCACAAAGCCATAATCAGA
42565581 AGGCTTTAAG
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
21 3 0.09
22 29 0.85
23 2 0.06
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGA
Found at i:42566416 original size:27 final size:27
Alignment explanation
Indices: 42566006--42566409 Score: 461
Period size: 27 Copynumber: 15.0 Consensus size: 27
42565996 GGGGCAAAAT
*
42566006 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
42566033 GATATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
42566060 GGTATTTCTATCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** *
42566087 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
42566114 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
42566141 AGCAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
42566168 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** * ** *
42566195 GACATTTCTACCCT-GTAGAGGTGTTTC
1 GGTAATTCTACCCTACAAG-GGTATTTC
* *
42566222 GGTATTTTTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
42566249 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
42566276 AGCAATTCTACTCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
42566303 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** *
42566330 GACATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
42566357 GGT-ATTTTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
42566383 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
42566410 AATAATTTTG
Statistics
Matches: 321, Mismatches: 53, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
26 24 0.07
27 295 0.92
28 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Done.