Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 141 of 316
Found at i:45005423 original size:20 final size:20
Alignment explanation
Indices: 45005384--45005423 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
45005374 AAACTTCTTC
* *
45005384 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
45005404 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
45005424 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:45005799 original size:55 final size:53
Alignment explanation
Indices: 45005609--45005863 Score: 218
Period size: 55 Copynumber: 4.8 Consensus size: 53
45005599 ACGCAGGTAC
* * * * *
45005609 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA
* *
45005658 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAA
* * *
45005711 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCC-TTGCCTTAT-G-AA
* ***
45005766 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA
* * ** * *
45005819 CCTTATCAATCTCCATCCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAAT-GCCATGTCTTGACATGGTCTTACATGGGATCCTT
45005864 AAACCCTAAT
Statistics
Matches: 173, Mismatches: 22, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
49 38 0.22
50 1 0.01
52 2 0.01
53 49 0.28
54 12 0.07
55 69 0.40
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAA
Found at i:45005800 original size:108 final size:110
Alignment explanation
Indices: 45005656--45005856 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
45005646 ATCCTTTTGA
* *
45005656 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
*
45005719 T-GCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TCGCCATCCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * * *
45005764 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTATCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
*
45005829 CTCCATCCCTTGGCATGGTCTTACATGG
66 CGCCATCCCTTGGCATGGTCTTACATGG
45005857 TATCCTTAAA
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 1 0.01
108 49 0.60
109 7 0.09
110 25 0.30
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
CGCCATCCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:45010230 original size:47 final size:47
Alignment explanation
Indices: 45010152--45010559 Score: 620
Period size: 47 Copynumber: 8.6 Consensus size: 47
45010142 CCCTTCGGGA
* * * * * * *
45010152 CTTATCACATTTATATACTTTCACATCCATCACGTTGGCCACTCGG-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
45010198 CTCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CT-TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
45010246 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45010293 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45010340 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45010389 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
45010438 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45010487 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
45010534 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
45010560 CACAATTATC
Statistics
Matches: 339, Mismatches: 19, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
46 2 0.01
47 192 0.57
48 2 0.01
49 143 0.42
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:45010386 original size:96 final size:96
Alignment explanation
Indices: 45010152--45010559 Score: 641
Period size: 96 Copynumber: 4.3 Consensus size: 96
45010142 CCCTTCGGGA
* * * * * * *
45010152 CTTATCACAT-T-TATATACTTTCACATCCATCACGTTGGCCACTCGG-CTCTGTCACATATATA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT-TATCACATATATA
45010214 CACTTTCACATTCATCACATCGGCCATTAGGC
65 CACTTTCACATTCATCACATCGGCCATTAGGC
* *
45010246 CTCATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
45010309 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
45010340 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
45010405 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
* *
45010438 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
45010503 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
45010534 CTTATCACATATATATACA--TTCACAT
1 CTTATCACATATATATACACTTTCACAT
45010560 CACAATTATC
Statistics
Matches: 294, Mismatches: 13, Indels: 14
0.92 0.04 0.04
Matches are distributed among these distances:
93 1 0.00
94 93 0.32
95 2 0.01
96 104 0.35
98 94 0.32
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:45017707 original size:55 final size:53
Alignment explanation
Indices: 45017517--45017771 Score: 236
Period size: 55 Copynumber: 4.8 Consensus size: 53
45017507 ACGCGGGTAC
* * * * *
45017517 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA
* *
45017566 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAA
* * *
45017619 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCC-TTGCCTTAT-G-AA
* ***
45017674 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA
** * *
45017727 CTTTACCAATTGCCATCCCTTGTCATGGTCTTACATGGTATCCTT
1 C-TTACCAA-TGCCATGTCTTGACATGGTCTTACATGGGATCCTT
45017772 AAACCCTAAT
Statistics
Matches: 173, Mismatches: 22, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
49 38 0.22
50 1 0.01
52 2 0.01
53 50 0.29
54 9 0.05
55 71 0.41
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.37
Consensus pattern (53 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAA
Found at i:45017708 original size:108 final size:110
Alignment explanation
Indices: 45017564--45017764 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
45017554 ATCCTTTTGA
* *
45017564 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AAC-TCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACTTCACCAA
*
45017627 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATCCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
45017672 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACTTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACTTCACCAAT
*
45017737 TGCCATCCCTTGTCATGGTCTTACATGG
66 TGCCATCCCTTGGCATGGTCTTACATGG
45017765 TATCCTTAAA
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 1 0.01
108 50 0.60
109 6 0.07
110 26 0.31
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACTTCACCAAT
TGCCATCCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:45019481 original size:42 final size:42
Alignment explanation
Indices: 45019422--45019550 Score: 134
Period size: 42 Copynumber: 3.1 Consensus size: 42
45019412 TCGATACCGT
* * * ** *
45019422 TGCCATGTCCTATACATGGTCTTATACGGGACCTTATATCAA
1 TGCCATGTCCCAGACATGGTCTTACACGAAACCTCATATCAA
*
45019464 TGCCATGTCCCAGACATGGTCTTACACGAAATCTCATATCAA
1 TGCCATGTCCCAGACATGGTCTTACACGAAACCTCATATCAA
* * * * * *
45019506 CGCCATATCCCAGATATGGTCTTACATGAAA-TTCATACCAA
1 TGCCATGTCCCAGACATGGTCTTACACGAAACCTCATATCAA
45019547 TGCC
1 TGCC
45019551 GATGCCATAT
Statistics
Matches: 73, Mismatches: 14, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
41 11 0.15
42 62 0.85
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (42 bp):
TGCCATGTCCCAGACATGGTCTTACACGAAACCTCATATCAA
Found at i:45024687 original size:14 final size:14
Alignment explanation
Indices: 45024668--45024699 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
45024658 ATTGAAAATT
45024668 TTAATTTAAATAAA
1 TTAATTTAAATAAA
*
45024682 TTAATTTATATAAA
1 TTAATTTAAATAAA
45024696 TTAA
1 TTAA
45024700 CCTATAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
TTAATTTAAATAAA
Found at i:45026061 original size:19 final size:19
Alignment explanation
Indices: 45026037--45026083 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
45026027 GAGAGATCTG
45026037 ATTTGTGGAAGACAATCAA
1 ATTTGTGGAAGACAATCAA
45026056 ATTTGTGGAAGACAATCAA
1 ATTTGTGGAAGACAATCAA
*
45026075 ACTTGTGGA
1 ATTTGTGGA
45026084 TTAGCAATCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.38, C:0.11, G:0.23, T:0.28
Consensus pattern (19 bp):
ATTTGTGGAAGACAATCAA
Found at i:45032332 original size:25 final size:25
Alignment explanation
Indices: 45032298--45032374 Score: 127
Period size: 25 Copynumber: 3.1 Consensus size: 25
45032288 CAAGAATAAG
*
45032298 AAAGACTCGTTCATGAGTGCACAAA
1 AAAGACTCGTTTATGAGTGCACAAA
*
45032323 AAAGACTCGTTTATGAGTACACAAA
1 AAAGACTCGTTTATGAGTGCACAAA
*
45032348 AAAGACTCGTTTACGAGTGCACAAA
1 AAAGACTCGTTTATGAGTGCACAAA
45032373 AA
1 AA
45032375 CTCATAGGCT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 48 1.00
ACGTcount: A:0.43, C:0.18, G:0.18, T:0.21
Consensus pattern (25 bp):
AAAGACTCGTTTATGAGTGCACAAA
Found at i:45034220 original size:14 final size:14
Alignment explanation
Indices: 45034201--45034232 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
45034191 TCCAATCACC
45034201 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
45034215 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
45034229 GGGC
1 GGGC
45034233 TAAATGACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.06, C:0.16, G:0.47, T:0.31
Consensus pattern (14 bp):
GGGCCAGTTTGGTT
Found at i:45038093 original size:40 final size:40
Alignment explanation
Indices: 45038038--45038303 Score: 455
Period size: 40 Copynumber: 6.7 Consensus size: 40
45038028 GAGCATTGGA
45038038 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
45038078 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
45038118 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
45038158 ATATATCCGGGCTAAGACCCGAAGGCAATTA-GCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
45038197 ATATATCC-GGCTATGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
45038236 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
45038276 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
45038304 ATGTGTTTGC
Statistics
Matches: 215, Mismatches: 9, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
38 21 0.10
39 30 0.14
40 164 0.76
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:45038248 original size:118 final size:120
Alignment explanation
Indices: 45038038--45038303 Score: 455
Period size: 118 Copynumber: 2.2 Consensus size: 120
45038028 GAGCATTGGA
45038038 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
* * *
45038103 CAATTATGCGAGTTGATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
66 CAATTATGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGATG
*
45038158 ATATATCCGGGCTAAGACCCGAAGGCAATTA-GCGAGTTGATATATCC-GGCTATGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
*
45038221 CAATTATGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
66 CAATTATGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGATG
* *
45038276 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
45038304 ATGTGTTTGC
Statistics
Matches: 139, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
118 92 0.66
119 16 0.12
120 31 0.22
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (120 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
CAATTATGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGATG
Found at i:45046838 original size:40 final size:40
Alignment explanation
Indices: 45046783--45047050 Score: 464
Period size: 40 Copynumber: 6.7 Consensus size: 40
45046773 GAGCATTGGA
45046783 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
45046823 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
45046863 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
45046903 ATATATCCGGGCTAAGACCCGAAGGCAATTACGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
45046943 ATATATCCGGGCTATGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
45046983 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
45047023 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
45047051 ATGTGTTTGC
Statistics
Matches: 217, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 217 1.00
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:45050463 original size:40 final size:40
Alignment explanation
Indices: 45050418--45050551 Score: 130
Period size: 40 Copynumber: 3.3 Consensus size: 40
45050408 ATTATGTTTC
* * *
45050418 GCACTTAGTGTGTGTATC-GAGATAGCTTCAGCTTTATAAA
1 GCACTTAGTGTGCGAATCGGA-ATAGCTTCAGCTATATAAA
**
45050458 GCACTTAGTGTGCGAATCGGAATAGCTTCAGCTATATATG
1 GCACTTAGTGTGCGAATCGGAATAGCTTCAGCTATATAAA
* * * *
45050498 GCACTTAGTGTGC-AAGGCTGAGATAGCTTCGGCTATGA-AAG
1 GCACTTAGTGTGCGAA-TCGGA-ATAGCTTCAGCTAT-ATAAA
45050539 GCACTTAGTGTGC
1 GCACTTAGTGTGC
45050552 AAGATTATAA
Statistics
Matches: 81, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
39 2 0.02
40 48 0.59
41 30 0.37
42 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (40 bp):
GCACTTAGTGTGCGAATCGGAATAGCTTCAGCTATATAAA
Found at i:45050533 original size:41 final size:41
Alignment explanation
Indices: 45050436--45050554 Score: 145
Period size: 41 Copynumber: 2.9 Consensus size: 41
45050426 TGTGTGTATC
* * *
45050436 GAGATAGCTTCAGCTTTATAAAGCACTTAGTGTGCGAA-TCG
1 GAGATAGCTTCAGCTATATAAGGCACTTAGTGTGC-AAGGCG
* *
45050477 GA-ATAGCTTCAGCTATATATGGCACTTAGTGTGCAAGGCT
1 GAGATAGCTTCAGCTATATAAGGCACTTAGTGTGCAAGGCG
*
45050517 GAGATAGCTTCGGCTATGA-AAGGCACTTAGTGTGCAAG
1 GAGATAGCTTCAGCTAT-ATAAGGCACTTAGTGTGCAAG
45050555 ATTATAATTG
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
39 2 0.03
40 32 0.47
41 33 0.49
42 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.28
Consensus pattern (41 bp):
GAGATAGCTTCAGCTATATAAGGCACTTAGTGTGCAAGGCG
Found at i:45057795 original size:79 final size:79
Alignment explanation
Indices: 45057642--45057846 Score: 257
Period size: 79 Copynumber: 2.5 Consensus size: 79
45057632 TATTTCGCGC
* * ** * * *
45057642 ACTAAGTGCCATACCCAATTTCTTGCACAATAAGTGCCAAGCTCGATGTCTCGCACACTAAGTGC
1 ACTAAGTGCCATACTCAATGTCTCACACACTAAGTGCC-A--T--ATGTCTCACAAACTAAGTGC
45057707 CATACTCAATGTCTCACAA
61 CATACTCAATGTCTCACAA
* * *
45057726 ACTAAGTGCCATTCTCAATGTCTCACACACTAAGTGCTATATGTCTCACAAACTAAGTGCCATTC
1 ACTAAGTGCCATACTCAATGTCTCACACACTAAGTGCCATATGTCTCACAAACTAAGTGCCATAC
*
45057791 TCAATGTCTCACAC
66 TCAATGTCTCACAA
*
45057805 ACTAAGTGCTATACTCAATGTCTCACACACTAAGTGCCATAT
1 ACTAAGTGCCATACTCAATGTCTCACACACTAAGTGCCATAT
45057847 TCAATGTTTC
Statistics
Matches: 107, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
79 74 0.69
81 1 0.01
83 1 0.01
84 31 0.29
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (79 bp):
ACTAAGTGCCATACTCAATGTCTCACACACTAAGTGCCATATGTCTCACAAACTAAGTGCCATAC
TCAATGTCTCACAA
Found at i:45057806 original size:107 final size:107
Alignment explanation
Indices: 45057672--45057868 Score: 315
Period size: 107 Copynumber: 1.8 Consensus size: 107
45057662 TCTTGCACAA
* *
45057672 TAAGTGCCAAGCTCGATGTCTCGCACACTAAGTGCCATACTCAATGTCTCACAAACTAAGTGCCA
1 TAAGTGCCAAGCTCAATGTCTCACACACTAAGTGCCATACTCAATGTCTCACAAACTAAGTGCCA
45057737 T-TCTCAATGTCTCACACACTAAGTGCTATATGTCTCACAAAC
66 TAT-TCAATGTCTCACACACTAAGTGCTATATGTCTCACAAAC
** * *
45057779 TAAGTGCCATTCTCAATGTCTCACACACTAAGTGCTATACTCAATGTCTCACACACTAAGTGCCA
1 TAAGTGCCAAGCTCAATGTCTCACACACTAAGTGCCATACTCAATGTCTCACAAACTAAGTGCCA
*
45057844 TATTCAATGTTTCACACACTAAGTG
66 TATTCAATGTCTCACACACTAAGTG
45057869 TCGTATATAG
Statistics
Matches: 82, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
107 81 0.99
108 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.28
Consensus pattern (107 bp):
TAAGTGCCAAGCTCAATGTCTCACACACTAAGTGCCATACTCAATGTCTCACAAACTAAGTGCCA
TATTCAATGTCTCACACACTAAGTGCTATATGTCTCACAAAC
Found at i:45057852 original size:56 final size:56
Alignment explanation
Indices: 45057641--45057868 Score: 292
Period size: 56 Copynumber: 4.2 Consensus size: 56
45057631 ATATTTCGCG
* * ** * *
45057641 CACTAAGTGCCATACCCAATTTCTTGCAC-AA-TAAGTGCCAAGCTCGATGTCTCGCA
1 CACTAAGTGCCATACTCAATGTC-T-CACAAACTAAGTGCCATTCTCAATGTCTCACA
45057697 CACTAAGTGCCATACTCAATGTCTCACAAACTAAGTGCCATTCTCAATGTCTCACA
1 CACTAAGTGCCATACTCAATGTCTCACAAACTAAGTGCCATTCTCAATGTCTCACA
45057753 CACTAAGTG-C-TA-T--ATGTCTCACAAACTAAGTGCCATTCTCAATGTCTCACA
1 CACTAAGTGCCATACTCAATGTCTCACAAACTAAGTGCCATTCTCAATGTCTCACA
* * *
45057804 CACTAAGTGCTATACTCAATGTCTCACACACTAAGTGCCATAT-TCAATGTTTCACA
1 CACTAAGTGCCATACTCAATGTCTCACAAACTAAGTGCCAT-TCTCAATGTCTCACA
45057860 CACTAAGTG
1 CACTAAGTG
45057869 TCGTATATAG
Statistics
Matches: 155, Mismatches: 9, Indels: 16
0.86 0.05 0.09
Matches are distributed among these distances:
51 47 0.30
53 3 0.02
54 6 0.04
55 4 0.03
56 94 0.61
57 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.28
Consensus pattern (56 bp):
CACTAAGTGCCATACTCAATGTCTCACAAACTAAGTGCCATTCTCAATGTCTCACA
Found at i:45057862 original size:30 final size:28
Alignment explanation
Indices: 45057641--45057868 Score: 238
Period size: 28 Copynumber: 8.3 Consensus size: 28
45057631 ATATTTCGCG
** * **
45057641 CACTAAGTGCCATACCCAATTTCTTGCA
1 CACTAAGTGCCATATTCAATGTCTCACA
* * * *
45057669 CAATAAGTGCCA-AGCTCGATGTCTCGCA
1 CACTAAGTGCCATA-TTCAATGTCTCACA
*
45057697 CACTAAGTGCCATACTCAATGTCTCACA
1 CACTAAGTGCCATATTCAATGTCTCACA
*
45057725 AACTAAGTGCCAT-TCTCAATGTCTCACA
1 CACTAAGTGCCATAT-TCAATGTCTCACA
45057753 CACTAAGTG-C-TA-T--ATGTCTCACA
1 CACTAAGTGCCATATTCAATGTCTCACA
*
45057776 AACTAAGTGCCAT-TCTCAATGTCTCACA
1 CACTAAGTGCCATAT-TCAATGTCTCACA
* *
45057804 CACTAAGTGCTATACTCAATGTCTCACA
1 CACTAAGTGCCATATTCAATGTCTCACA
*
45057832 CACTAAGTGCCATATTCAATGTTTCACA
1 CACTAAGTGCCATATTCAATGTCTCACA
45057860 CACTAAGTG
1 CACTAAGTG
45057869 TCGTATATAG
Statistics
Matches: 171, Mismatches: 18, Indels: 22
0.81 0.09 0.10
Matches are distributed among these distances:
23 18 0.11
24 1 0.01
25 2 0.01
26 2 0.01
27 2 0.01
28 145 0.85
29 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.28
Consensus pattern (28 bp):
CACTAAGTGCCATATTCAATGTCTCACA
Found at i:45058886 original size:23 final size:23
Alignment explanation
Indices: 45058855--45058902 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
45058845 ACATTTAACA
45058855 TATAAGATGCCACTTTTGCATTT
1 TATAAGATGCCACTTTTGCATTT
* *
45058878 TATAGGATGCTACTTTTGCATTT
1 TATAAGATGCCACTTTTGCATTT
45058901 TA
1 TA
45058903 CGCGATTTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.15, T:0.46
Consensus pattern (23 bp):
TATAAGATGCCACTTTTGCATTT
Found at i:45063656 original size:17 final size:17
Alignment explanation
Indices: 45063617--45063677 Score: 59
Period size: 17 Copynumber: 3.6 Consensus size: 17
45063607 TGTCCTCTAG
* *
45063617 GCGATACAATCCGCCAG
1 GCGATACAATCCACCAA
* *
45063634 GTGATACAATGCACCAA
1 GCGATACAATCCACCAA
* **
45063651 GCGATACTATCCTTCAA
1 GCGATACAATCCACCAA
45063668 GCGATACAAT
1 GCGATACAAT
45063678 TCATCAAAGA
Statistics
Matches: 34, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
17 34 1.00
ACGTcount: A:0.34, C:0.28, G:0.18, T:0.20
Consensus pattern (17 bp):
GCGATACAATCCACCAA
Found at i:45063684 original size:17 final size:17
Alignment explanation
Indices: 45063617--45063684 Score: 55
Period size: 17 Copynumber: 4.0 Consensus size: 17
45063607 TGTCCTCTAG
** *
45063617 GCGATACAATCCGCCAG
1 GCGATACAATCCATCAA
* * *
45063634 GTGATACAATGCACCAA
1 GCGATACAATCCATCAA
* *
45063651 GCGATACTATCCTTCAA
1 GCGATACAATCCATCAA
*
45063668 GCGATACAATTCATCAA
1 GCGATACAATCCATCAA
45063685 AGATGTATGT
Statistics
Matches: 39, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
17 39 1.00
ACGTcount: A:0.35, C:0.28, G:0.16, T:0.21
Consensus pattern (17 bp):
GCGATACAATCCATCAA
Found at i:45068307 original size:43 final size:43
Alignment explanation
Indices: 45068217--45068315 Score: 135
Period size: 43 Copynumber: 2.3 Consensus size: 43
45068207 TCCGACGCCG
* * * *
45068217 CTAAAAGCCATGACCTTTAGCGGCGCTTTTCCCACAAACGCCG
1 CTAAAGGCCATGACCTTTAGCGGCGCTTTTCCCAAAAACACCA
* *
45068260 CTAAAGGCCATGGCCTTTAGCGGCGCTTTTCTCAAAAACACCA
1 CTAAAGGCCATGACCTTTAGCGGCGCTTTTCCCAAAAACACCA
*
45068303 CTAAAGGTCATGA
1 CTAAAGGCCATGA
45068316 AATTCAAAAA
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 48 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.22
Consensus pattern (43 bp):
CTAAAGGCCATGACCTTTAGCGGCGCTTTTCCCAAAAACACCA
Found at i:45068600 original size:18 final size:19
Alignment explanation
Indices: 45068563--45068603 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
45068553 ATTTAGAATC
45068563 AAAACTAAAATAAATAATA
1 AAAACTAAAATAAATAATA
* *
45068582 AAAACTAGATTAAAT-ATA
1 AAAACTAAAATAAATAATA
45068600 AAAA
1 AAAA
45068604 TGTCAATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.71, C:0.05, G:0.02, T:0.22
Consensus pattern (19 bp):
AAAACTAAAATAAATAATA
Found at i:45068604 original size:31 final size:31
Alignment explanation
Indices: 45068529--45068602 Score: 82
Period size: 31 Copynumber: 2.4 Consensus size: 31
45068519 TCAAGTTATC
*
45068529 TTAAATATTAAAATAAAAATAAAAATTTAGAA
1 TTAAATA-TAAAATAAAAATAAAAATCTAGAA
*
45068561 TCAAA-ACTAAAATAAATAATAAAAA-CTAG-A
1 TTAAATA-TAAAATAAA-AATAAAAATCTAGAA
45068591 TTAAATATAAAA
1 TTAAATATAAAA
45068603 ATGTCAATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
30 10 0.28
31 14 0.39
32 12 0.33
ACGTcount: A:0.66, C:0.04, G:0.03, T:0.27
Consensus pattern (31 bp):
TTAAATATAAAATAAAAATAAAAATCTAGAA
Found at i:45072077 original size:18 final size:18
Alignment explanation
Indices: 45072054--45072097 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
45072044 AGGGATTTTG
* *
45072054 GGGGAAATTTAG-GGATT
1 GGGGAAATGTAGAGAATT
45072071 AGGGGAAATGTAGAGAATT
1 -GGGGAAATGTAGAGAATT
45072090 GGGGAAAT
1 GGGGAAAT
45072098 CTATTTTGGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 19 0.83
19 4 0.17
ACGTcount: A:0.36, C:0.00, G:0.41, T:0.23
Consensus pattern (18 bp):
GGGGAAATGTAGAGAATT
Found at i:45072313 original size:76 final size:75
Alignment explanation
Indices: 45072227--45072454 Score: 343
Period size: 76 Copynumber: 3.0 Consensus size: 75
45072217 CGTCATTTTC
** *
45072227 ATAGTGTTTTTTTGTGGCGTTTTTTAAAAAAATACCACTAATCTCTTAATTTACATATTTATTTT
1 ATAGTGTTTTTTTGTGGCGTTTTTT-AAAAAACGCCACTAATCTCTTAATTTTCATATTTATTTT
45072292 TATTTGTTATA
65 TATTTGTTATA
* *
45072303 ATAGTG-TTTTTTGTGACGTTTTTTTTAAAAAACGCCACTAATCTTTTAATTTTCATATTTATTT
1 ATAGTGTTTTTTTGTGGCG--TTTTTTAAAAAACGCCACTAATCTCTTAATTTTCATATTTATTT
*
45072367 TTATTTCTTATA
64 TTATTTGTTATA
* *
45072379 ATAGTGTTTTTTT-TGGCGTTTTTTTAAAAACGCCACTAATCTCTTAATTTTCATTTTTATTTTT
1 ATAGTGTTTTTTTGTGGCGTTTTTTAAAAAACGCCACTAATCTCTTAATTTTCATATTTATTTTT
45072443 ATTTGTTATA
66 ATTTGTTATA
45072453 AT
1 AT
45072455 TTGGAAGCCA
Statistics
Matches: 138, Mismatches: 11, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
74 54 0.39
75 11 0.08
76 61 0.44
77 12 0.09
ACGTcount: A:0.26, C:0.10, G:0.09, T:0.55
Consensus pattern (75 bp):
ATAGTGTTTTTTTGTGGCGTTTTTTAAAAAACGCCACTAATCTCTTAATTTTCATATTTATTTTT
ATTTGTTATA
Found at i:45072778 original size:14 final size:14
Alignment explanation
Indices: 45072736--45072790 Score: 51
Period size: 14 Copynumber: 3.9 Consensus size: 14
45072726 CCTAAACCTT
*
45072736 TAACACATAACCCC
1 TAACACATAATCCC
* *
45072750 TAAGC-CTTAAACCC
1 TAA-CACATAATCCC
45072764 TAACACATAATCCC
1 TAACACATAATCCC
45072778 TAA-ACCATAATCC
1 TAACA-CATAATCC
45072791 ATAAGCTTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
13 2 0.06
14 31 0.91
15 1 0.03
ACGTcount: A:0.42, C:0.36, G:0.02, T:0.20
Consensus pattern (14 bp):
TAACACATAATCCC
Found at i:45072852 original size:22 final size:22
Alignment explanation
Indices: 45072827--45072890 Score: 101
Period size: 22 Copynumber: 2.9 Consensus size: 22
45072817 ACCATAAACC
*
45072827 CCTAACCCCAATCCCCTTAACG
1 CCTAACCCCTATCCCCTTAACG
*
45072849 CCTAACCCTTATCCCCTTAACG
1 CCTAACCCCTATCCCCTTAACG
*
45072871 CCTAACCTCTATCCCCTTAA
1 CCTAACCCCTATCCCCTTAA
45072891 AACCTGTTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 38 1.00
ACGTcount: A:0.25, C:0.47, G:0.03, T:0.25
Consensus pattern (22 bp):
CCTAACCCCTATCCCCTTAACG
Found at i:45073195 original size:25 final size:25
Alignment explanation
Indices: 45073065--45073197 Score: 91
Period size: 25 Copynumber: 5.4 Consensus size: 25
45073055 ACTCTACCCT
*
45073065 AACCATTAAACCCTAATTAA-TCATA
1 AACC-TTAAACCATAATTAACTCATA
* * *
45073090 ATCCCTAAACCCATAATTCA-TCATA
1 AACCTTAAA-CCATAATTAACTCATA
* * *
45073115 AACCTTCAAA-TACTAGTTAACTCCTA
1 AACCTT-AAACCA-TAATTAACTCATA
*
45073141 AACCTTAAACCCT-A--AACT-ATA
1 AACCTTAAACCATAATTAACTCATA
* *
45073162 TATCTTAAACCATAATTAACTCATA
1 AACCTTAAACCATAATTAACTCATA
45073187 AACCTTAAACC
1 AACCTTAAACC
45073198 CTAAACCATA
Statistics
Matches: 80, Mismatches: 19, Indels: 18
0.68 0.16 0.15
Matches are distributed among these distances:
21 12 0.15
22 5 0.06
24 9 0.11
25 41 0.51
26 13 0.16
ACGTcount: A:0.44, C:0.27, G:0.01, T:0.29
Consensus pattern (25 bp):
AACCTTAAACCATAATTAACTCATA
Found at i:45073197 original size:7 final size:7
Alignment explanation
Indices: 45073183--45073236 Score: 54
Period size: 7 Copynumber: 7.7 Consensus size: 7
45073173 ATAATTAACT
45073183 CATAAAC
1 CATAAAC
*
45073190 CTTAAAC
1 CATAAAC
*
45073197 CCTAAAC
1 CATAAAC
* *
45073204 CATATAT
1 CATAAAC
*
45073211 CTTAAAC
1 CATAAAC
45073218 CATAAAC
1 CATAAAC
45073225 CATAAAC
1 CATAAAC
*
45073232 TATAA
1 CATAA
45073237 TGATAATTAA
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
7 37 1.00
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (7 bp):
CATAAAC
Found at i:45073198 original size:46 final size:46
Alignment explanation
Indices: 45073131--45073222 Score: 166
Period size: 46 Copynumber: 2.0 Consensus size: 46
45073121 CAAATACTAG
* *
45073131 TTAACTCCTAAACCTTAAACCCTAAACTATATATCTTAAACCATAA
1 TTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACCATAA
45073177 TTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACCATAA
1 TTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACCATAA
45073223 ACCATAAACT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.45, C:0.26, G:0.00, T:0.29
Consensus pattern (46 bp):
TTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACCATAA
Found at i:45073225 original size:21 final size:21
Alignment explanation
Indices: 45073144--45073228 Score: 89
Period size: 21 Copynumber: 3.9 Consensus size: 21
45073134 ACTCCTAAAC
* *
45073144 CTTAAACCCTAAACTATATAT
1 CTTAAACCATAAACCATATAT
* *
45073165 CTTAAACCATAATTAACTCATAAAC
1 CTTAAACCAT-A--AAC-CATATAT
*
45073190 CTTAAACCCTAAACCATATAT
1 CTTAAACCATAAACCATATAT
45073211 CTTAAACCATAAACCATA
1 CTTAAACCATAAACCATA
45073229 AACTATAATG
Statistics
Matches: 52, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
21 31 0.60
22 4 0.08
24 4 0.08
25 13 0.25
ACGTcount: A:0.46, C:0.26, G:0.00, T:0.28
Consensus pattern (21 bp):
CTTAAACCATAAACCATATAT
Found at i:45073572 original size:41 final size:42
Alignment explanation
Indices: 45073393--45073573 Score: 210
Period size: 41 Copynumber: 4.4 Consensus size: 42
45073383 GTTATACGAC
* * *
45073393 TTTTAGTGGCGTTTTTTCCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCATTTTTGCCAAAAGCGCCGCTAATGCTCTGGT
* * *
45073435 TTTTAGCGGCA-TTTTGCCAAAAGCACCACTAATGCTCTCGT
1 TTTTAGCGGCATTTTTGCCAAAAGCGCCGCTAATGCTCTGGT
45073476 TTTTAGCGGCA-TTTTGCCAAAAGCGCCGCTAATGCTCT-GT
1 TTTTAGCGGCATTTTTGCCAAAAGCGCCGCTAATGCTCTGGT
* * * * *
45073516 TTTTCGCGGCGTTTTTTACTAAAA-CGCCGCTATTGCTCTGGT
1 TTTTAGCGGC-ATTTTTGCCAAAAGCGCCGCTAATGCTCTGGT
*
45073558 TTTT-GTGGCATTTTTG
1 TTTTAGCGGCATTTTTG
45073574 GTAAAACGCT
Statistics
Matches: 120, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
40 16 0.13
41 80 0.67
42 24 0.20
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.38
Consensus pattern (42 bp):
TTTTAGCGGCATTTTTGCCAAAAGCGCCGCTAATGCTCTGGT
Found at i:45081295 original size:69 final size:67
Alignment explanation
Indices: 45081188--45081370 Score: 222
Period size: 69 Copynumber: 2.6 Consensus size: 67
45081178 AGACCATAGT
* * *
45081188 TGGGGCTATGGCAACATATGAAGCTCACCGAGACAATAAACATGGGATCATATTGTGTAAGACCA
1 TGGGGCTATGGCAACATATGAAG-TC-CCAAGAAAATAAACATGGGATCATATTATGTAAGACCA
45081253 CAAC
64 CAAC
* * *
45081257 TGGGGCTATGGCAACATATAAAGTCCGCAAGGATAATAAACATGGGATCTTATTATGTAAGACCA
1 TGGGGCTATGGCAACATATGAAGTCC-CAA-GAAAATAAACATGGGATCATATTATGTAAGACCA
45081322 CAAC
64 CAAC
* * * *
45081326 TAGGGCCACGGCAACATTTGAAGTCCACCAAGAAAATAAACATGG
1 TGGGGCTATGGCAACATATGAAGT-C-CCAAGAAAATAAACATGG
45081371 CAGCACATAG
Statistics
Matches: 99, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
67 1 0.01
68 4 0.04
69 89 0.90
70 4 0.04
71 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.22, T:0.20
Consensus pattern (67 bp):
TGGGGCTATGGCAACATATGAAGTCCCAAGAAAATAAACATGGGATCATATTATGTAAGACCACA
AC
Found at i:45082762 original size:50 final size:52
Alignment explanation
Indices: 45082699--45082811 Score: 133
Period size: 52 Copynumber: 2.2 Consensus size: 52
45082689 TATGACTCTT
* * *
45082699 ATGAGCTTCCTGTTATACAGCTT-AGATA-AGCTTCCCGTTACATG-GCTCAC
1 ATGAGCTTTCTGTTATACAGCTTGAGAGAGAGCTTCCCGTT-CATGTGCTCAA
** *
45082749 ATGAGCTTTCTGTTATATGGCTTGAGAGAGAGCTTCCCGTTTATGTGCTCAA
1 ATGAGCTTTCTGTTATACAGCTTGAGAGAGAGCTTCCCGTTCATGTGCTCAA
*
45082801 ATGAGCATTCT
1 ATGAGCTTTCT
45082812 CAAATATGAA
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
50 20 0.38
51 7 0.13
52 26 0.49
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.35
Consensus pattern (52 bp):
ATGAGCTTTCTGTTATACAGCTTGAGAGAGAGCTTCCCGTTCATGTGCTCAA
Found at i:45087108 original size:37 final size:37
Alignment explanation
Indices: 45087053--45087189 Score: 231
Period size: 37 Copynumber: 3.7 Consensus size: 37
45087043 TGAATAGTCC
* * *
45087053 CCACGCGTAGTTATCGGGTCTTACCTGGACA-AATTCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAA-TCT
45087090 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
45087127 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
45087164 CCACACGTAGTCATCGGGTCTTACCC
1 CCACACGTAGTCATCGGGTCTTACCC
45087190 AGAATATATT
Statistics
Matches: 96, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
37 94 0.98
38 2 0.02
ACGTcount: A:0.23, C:0.32, G:0.20, T:0.26
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
Found at i:45087391 original size:48 final size:48
Alignment explanation
Indices: 45087333--45087455 Score: 228
Period size: 48 Copynumber: 2.6 Consensus size: 48
45087323 ATATACACAC
* *
45087333 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCAGCTTTACCACATATACAT
45087381 ATCTCATACATATTTCACACTAGCCATTCAGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCAGCTTTACCACATATACAT
45087429 ATCTCATACATATTTCACACTAGCCAT
1 ATCTCATACATATTTCACACTAGCCAT
45087456 ATCTCATACA
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 73 1.00
ACGTcount: A:0.32, C:0.30, G:0.05, T:0.33
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCAGCTTTACCACATATACAT
Found at i:45087456 original size:27 final size:27
Alignment explanation
Indices: 45087378--45087482 Score: 98
Period size: 27 Copynumber: 4.1 Consensus size: 27
45087368 ACCACATATA
45087378 CATATCTCATACATATTTCACACTAGC
1 CATATCTCATACATATTTCACACTAGC
* * **
45087405 C--AT-TCA-GC-T-TTAC-CACATATA
1 CATATCTCATACATATTTCACAC-TAGC
45087426 CATATCTCATACATATTTCACACTAGC
1 CATATCTCATACATATTTCACACTAGC
* *
45087453 CATATCTCATACATATTTCCCGCTAGC
1 CATATCTCATACATATTTCACACTAGC
45087480 CAT
1 CAT
45087483 TCGGCTTTAC
Statistics
Matches: 60, Mismatches: 10, Indels: 16
0.70 0.12 0.19
Matches are distributed among these distances:
20 3 0.05
21 6 0.10
22 1 0.02
23 3 0.05
24 6 0.10
25 3 0.05
26 1 0.02
27 34 0.57
28 3 0.05
ACGTcount: A:0.31, C:0.30, G:0.05, T:0.33
Consensus pattern (27 bp):
CATATCTCATACATATTTCACACTAGC
Found at i:45087508 original size:48 final size:48
Alignment explanation
Indices: 45087453--45087951 Score: 497
Period size: 48 Copynumber: 10.1 Consensus size: 48
45087443 TCACACTAGC
* * *
45087453 CATATCTCATACATATTTCCCGCTAGCCATTCGGCTTTACCACTTATA
1 CATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATA
* * *
45087501 CATATCTCATATATATTTCACATTAGCCATTCGACTTTACCACATATA
1 CATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATA
*
45087549 CATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 CATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATA
*
45087597 CATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATT
1 CATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATA
* * ** * *
45087645 CATATCTCATACATATTTCATCA-TA-CATATTTC-ACACTAGCCATTCGGCTTTA
1 CATATCTCATACATATTTCA-CACTAGC-CA-TTCGGCTTTA-CCA--C--ATATA
* * * * * * * * * *
45087698 C-CA-CAT-ATACATATCTCATACATATTTCACACTAGCCATTTGGCTTTACCACATA
1 CATATC-TCATACATATTTCACAC-TA--GC-CATTCGGC-TTT-AC--CA-CATATA
*
45087753 TACATATCTCATACATATTTCACACTAGCCATTCGGCTTAACCACATATA
1 --CATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATA
*
45087803 CATATCTCATACATATTTCACACTGGCCATTCGGCTTTACCACATATA
1 CATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATA
* * *
45087851 CATATCTCATATATATTTCATATTAGCCATTCGGCTTTACCACATATA
1 CATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATA
*
45087899 CATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 CATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATA
*
45087947 TATAT
1 CATAT
45087952 TTATCTTGTA
Statistics
Matches: 375, Mismatches: 52, Indels: 48
0.79 0.11 0.10
Matches are distributed among these distances:
47 1 0.00
48 300 0.80
49 8 0.02
50 6 0.02
51 14 0.04
52 4 0.01
53 4 0.01
54 3 0.01
55 11 0.03
56 3 0.01
57 2 0.01
58 5 0.01
59 14 0.04
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
CATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATA
Found at i:45087552 original size:123 final size:123
Alignment explanation
Indices: 45087333--45087578 Score: 413
Period size: 123 Copynumber: 2.0 Consensus size: 123
45087323 ATATACACAC
*
45087333 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
45087398 CACTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCAT
66 CACTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCAT
* * * *
45087456 ATCTCATACATATTTCCCGCTAGCCATTCGGCTTTACCACTTATACATATCTCATATATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
45087521 CATTAGCCATTC-GACTTTACCACATATACATATCTCATACATATTTCACATTAGCCAT
66 CACTAGCCATTCAG-CTTTACCACATATACATATCTCATACATATTTCACACTAGCCAT
45087579 TCGGCTTTAC
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
122 1 0.01
123 114 0.99
ACGTcount: A:0.31, C:0.29, G:0.05, T:0.35
Consensus pattern (123 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
CACTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCAT
Found at i:45087579 original size:96 final size:96
Alignment explanation
Indices: 45087453--45087951 Score: 737
Period size: 96 Copynumber: 5.1 Consensus size: 96
45087443 TCACACTAGC
* * * *
45087453 CATATCTCATACATATTTCCCGCTAGCCATTCGGCTTTACCACTTATACATATCTCATATATATT
1 CATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT
* *
45087518 TCACATTAGCCATTCGACTTTACCACATATA
66 TCACACTAGCCATTCGGCTTTACCACATATA
*
45087549 CATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT
1 CATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT
45087614 TCACACTAGCCATTCGGCTTTACCACATATTCATATCTCATA
66 TCACACTAGCCATTCGGCTTTA-C-C--A--C--A--T-ATA
45087656 CATATTTCATCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
1 CATA--TC-TCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
*
45087721 ATTTCACACTAGCCATTTGGCTTTACCACATATA
63 ATTTCACACTAGCCATTCGGCTTTACCACATATA
*
45087755 CATATCTCATACATATTTCACACTAGCCATTCGGCTTAACCACATATACATATCTCATACATATT
1 CATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT
*
45087820 TCACACTGGCCATTCGGCTTTACCACATATA
66 TCACACTAGCCATTCGGCTTTACCACATATA
* * *
45087851 CATATCTCATATATATTTCATATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT
1 CATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT
*
45087916 TCACATTAGCCATTCGGCTTTACCACATATA
66 TCACACTAGCCATTCGGCTTTACCACATATA
*
45087947 TATAT
1 CATAT
45087952 TTATCTTGTA
Statistics
Matches: 370, Mismatches: 19, Indels: 28
0.89 0.05 0.07
Matches are distributed among these distances:
96 261 0.71
97 3 0.01
98 1 0.00
99 7 0.02
100 2 0.01
102 2 0.01
104 2 0.01
106 2 0.01
107 7 0.02
108 1 0.00
109 3 0.01
110 79 0.21
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (96 bp):
CATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT
TCACACTAGCCATTCGGCTTTACCACATATA
Found at i:45087670 original size:14 final size:14
Alignment explanation
Indices: 45087651--45087678 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
45087641 TATTCATATC
45087651 TCATACATATTTCA
1 TCATACATATTTCA
45087665 TCATACATATTTCA
1 TCATACATATTTCA
45087679 CACTAGCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.43
Consensus pattern (14 bp):
TCATACATATTTCA
Found at i:45087676 original size:62 final size:62
Alignment explanation
Indices: 45087603--45087726 Score: 239
Period size: 62 Copynumber: 2.0 Consensus size: 62
45087593 TATACATATC
*
45087603 TCATACATATTTCACACTAGCCATTCGGCTTTACCACATATTCATATCTCATACATATTTCA
1 TCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
45087665 TCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 TCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
45087727 CACTAGCCAT
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.31, C:0.27, G:0.05, T:0.36
Consensus pattern (62 bp):
TCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
Found at i:45087697 original size:158 final size:151
Alignment explanation
Indices: 45087453--45087945 Score: 717
Period size: 144 Copynumber: 3.3 Consensus size: 151
45087443 TCACACTAGC
* *
45087453 CATATCTCATACATATTTCCCGCTAGCCATTCGGCTTTACCAC---T----TATACATATCTCAT
1 CATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATCACATATACATATCTCAT
* * *
45087511 ATATATTTCACATTAGCCATTCGACTTTACCACATATACATATCTCATACATATTTCACATTAGC
66 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGC
45087576 CATTCGGCTTTACCACATATA
131 CATTCGGCTTTACCACATATA
*
45087597 CATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATTCATATCTCATACATATT
1 CATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATA-TCACA--T-ATACATA--
45087662 TCATCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
60 TC-TCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
45087727 CACTAGCCATTTGGCTTTACCACATATA
124 CATTAGCCATTCGGCTTTACCACATATA
45087755 CATATCTCATACATATTTCACACTAGCCATTCGGC-TTA--AC----CACATATACATATCTCAT
1 CATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATCACATATACATATCTCAT
* * *
45087813 ACATATTTCACACTGGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCATATTAGC
66 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGC
45087878 CATTCGGCTTTACCACATATA
131 CATTCGGCTTTACCACATATA
*
45087899 CATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
1 CATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
45087946 ATATATTTAT
Statistics
Matches: 314, Mismatches: 14, Indels: 35
0.87 0.04 0.10
Matches are distributed among these distances:
144 160 0.51
145 5 0.02
147 9 0.03
148 2 0.01
150 3 0.01
154 1 0.00
155 9 0.03
157 5 0.02
158 120 0.38
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (151 bp):
CATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATCACATATACATATCTCAT
ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGC
CATTCGGCTTTACCACATATA
Found at i:45087704 original size:31 final size:31
Alignment explanation
Indices: 45087607--45087705 Score: 80
Period size: 31 Copynumber: 3.2 Consensus size: 31
45087597 CATATCTCAT
45087607 ACATATTTCACACTAGCCATTCGGCTTTACC
1 ACATATTTCACACTAGCCATTCGGCTTTACC
* * *** *
45087638 ACATA-TT--CA-TATCTCATACATATTTCATCAT
1 ACATATTTCACACTAGC-CATTCGGCTTT-A-C-C
45087669 ACATATTTCACACTAGCCATTCGGCTTTACC
1 ACATATTTCACACTAGCCATTCGGCTTTACC
45087700 ACATAT
1 ACATAT
45087706 ACATATCTCA
Statistics
Matches: 48, Mismatches: 12, Indels: 16
0.63 0.16 0.21
Matches are distributed among these distances:
27 3 0.06
28 9 0.19
29 1 0.02
30 3 0.06
31 16 0.33
32 3 0.06
33 1 0.02
34 9 0.19
35 3 0.06
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.35
Consensus pattern (31 bp):
ACATATTTCACACTAGCCATTCGGCTTTACC
Found at i:45087709 original size:206 final size:199
Alignment explanation
Indices: 45087454--45087951 Score: 758
Period size: 206 Copynumber: 2.5 Consensus size: 199
45087444 CACACTAGCC
* * *
45087454 ATATCTCATACATATTTCCCGCTAGCCATTCGGCTTTACCACTTATACATATCTCATATATATTT
1 ATATATCATACATATTT-CC-CTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
* *
45087519 CACATTAGCCATTCGACTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGC
64 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGC
* *
45087584 TTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATTCATA
129 TTAACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA
45087649 TCTCAT
194 TCTCAT
45087655 ACATATTTCATCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACA
1 --ATA--T-ATCATACATATTTC-C-CTAGCCATTCGGCTTTACCACATATACATATCTCATACA
* *
45087720 TATTTCACACTAGCCATTTGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCAT
59 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCAT
*
45087785 TCGGCTTAACCACATATACATATCTCATACATATTTCACACTGGCCATTCGGCTTTACCACATAT
124 TCGGCTTAACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
45087850 ACATATCTCAT
189 ACATATCTCAT
*
45087861 ATATAT--TTCATA--T---TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATATATCATACATATTTCCCTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
45087919 CATTAGCCATTCGGCTTTACCACATATATATAT
66 CATTAGCCATTCGGCTTTACCACATATACATAT
45087952 TTATCTTGTA
Statistics
Matches: 276, Mismatches: 15, Indels: 19
0.89 0.05 0.06
Matches are distributed among these distances:
192 75 0.27
197 1 0.00
199 5 0.02
201 2 0.01
202 1 0.00
203 3 0.01
204 3 0.01
205 2 0.01
206 184 0.67
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (199 bp):
ATATATCATACATATTTCCCTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
CATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTT
AACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATC
TCAT
Found at i:45087905 original size:254 final size:254
Alignment explanation
Indices: 45087453--45087918 Score: 806
Period size: 254 Copynumber: 1.8 Consensus size: 254
45087443 TCACACTAGC
* * * *
45087453 CATATCTCATACATATTTCCCGCTAGCCATTCGGCTTTACCACTTATACATATCTCATATATATT
1 CATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT
* * *
45087518 TCACATTAGCCATTCGACTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGG
66 TCACACTAGCCATTCGACTTAACCACATATACATATCTCATACATATTTCACACTAGCCATTCGG
*
45087583 CTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATTCAT
131 CTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
45087648 ATCTCATACATATTTCATCATACATATTTCACACTAGCCATTCGGCTTTACCACATATA
196 ATCTCATACATATTTCATCATACATATTTCACACTAGCCATTCGGCTTTACCACATATA
*
45087707 CATATCTCATACATATTTCACACTAGCCATTTGGCTTTACCACATATACATATCTCATACATATT
1 CATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT
* *
45087772 TCACACTAGCCATTCGGCTTAACCACATATACATATCTCATACATATTTCACACTGGCCATTCGG
66 TCACACTAGCCATTCGACTTAACCACATATACATATCTCATACATATTTCACACTAGCCATTCGG
* * *
45087837 CTTTACCACATATACATATCTCATATATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
131 CTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
45087902 ATCTCATACATATTTCA
196 ATCTCATACATATTTCA
45087919 CATTAGCCAT
Statistics
Matches: 198, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
254 198 1.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (254 bp):
CATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT
TCACACTAGCCATTCGACTTAACCACATATACATATCTCATACATATTTCACACTAGCCATTCGG
CTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
ATCTCATACATATTTCATCATACATATTTCACACTAGCCATTCGGCTTTACCACATATA
Found at i:45091519 original size:28 final size:28
Alignment explanation
Indices: 45091488--45091615 Score: 150
Period size: 28 Copynumber: 4.5 Consensus size: 28
45091478 CTGACTGATT
*
45091488 TCGCACACATAGCGCTCGATTAAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* * *
45091516 TCGCACACATAGTGCCTCAATTACCA-ATC
1 TCGCACACATAGTG-CTCGATTA-AAGAAC
*
45091545 TCGCACACATAGTGCTCGATTGAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* *
45091573 TCGCACACATAGTGCTCGGTTGAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* *
45091601 TTGCACACACAGTGC
1 TCGCACACATAGTGC
45091616 CTCATAACTC
Statistics
Matches: 86, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
27 1 0.01
28 61 0.71
29 23 0.27
30 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (28 bp):
TCGCACACATAGTGCTCGATTAAAGAAC
Found at i:45091691 original size:40 final size:40
Alignment explanation
Indices: 45091647--45091861 Score: 385
Period size: 40 Copynumber: 5.4 Consensus size: 40
45091637 CCTTCGAGGT
*
45091647 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
*
45091687 TTAGCCCGGATATATCACTAGCACAAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
*
45091727 TTAGCCCGGATATATCACTAGCACAAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
*
45091767 TTAGCCCAGATATATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
*
45091807 TTAGCCCGGATATATCACTAGAACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
45091847 TTAGCCCGGATATAT
1 TTAGCCCGGATATAT
45091862 AACTCTCAAT
Statistics
Matches: 169, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 169 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
Found at i:45093185 original size:37 final size:37
Alignment explanation
Indices: 45093130--45093269 Score: 246
Period size: 37 Copynumber: 3.8 Consensus size: 37
45093120 CGAATAGTCC
* *
45093130 CCACGCGTAGTTATCGGGTCTTACCCGGACA-AATTCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAA-TCT
45093167 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
45093204 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
45093241 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
45093270 ATATATTTCC
Statistics
Matches: 100, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
37 98 0.98
38 2 0.02
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
Found at i:45093468 original size:48 final size:48
Alignment explanation
Indices: 45093410--45093656 Score: 431
Period size: 48 Copynumber: 5.1 Consensus size: 48
45093400 ATATACACAC
*
45093410 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
45093458 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACAACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
45093506 TTCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
45093554 TTCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
45093602 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCTCATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
45093650 ATCTCAT
1 ATCTCAT
45093657 TCGACTTTAC
Statistics
Matches: 191, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 191 1.00
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:45093658 original size:28 final size:28
Alignment explanation
Indices: 45093626--45093684 Score: 100
Period size: 28 Copynumber: 2.1 Consensus size: 28
45093616 TCACATTAGC
* *
45093626 CATTCGGCTTTACCTCATATACATATCT
1 CATTCGACTTTACCACATATACATATCT
45093654 CATTCGACTTTACCACATATACATATCT
1 CATTCGACTTTACCACATATACATATCT
45093682 CAT
1 CAT
45093685 ACATATTTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.29, C:0.29, G:0.05, T:0.37
Consensus pattern (28 bp):
CATTCGACTTTACCACATATACATATCT
Found at i:45093665 original size:76 final size:76
Alignment explanation
Indices: 45093578--45093732 Score: 265
Period size: 76 Copynumber: 2.0 Consensus size: 76
45093568 TCACACTAGC
* * * *
45093578 CATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGCTTTACCTCA
1 CATTCGACTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
45093643 TATACATATCT
66 TATACATATCT
45093654 CATTCGACTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
1 CATTCGACTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
*
45093719 TATATATATCT
66 TATACATATCT
45093730 CAT
1 CAT
45093733 ACATATTTCA
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
76 74 1.00
ACGTcount: A:0.30, C:0.27, G:0.06, T:0.37
Consensus pattern (76 bp):
CATTCGACTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
TATACATATCT
Found at i:45093683 original size:124 final size:124
Alignment explanation
Indices: 45093530--45093780 Score: 448
Period size: 124 Copynumber: 2.0 Consensus size: 124
45093520 TCACACTAGC
* *
45093530 CATTCGGCTTTACCACATATACATTTCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
1 CATTCGACTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
* * *
45093595 TATACATATCTCATATATATTTCACATTAGCCATTCGGCTTTACCTCATATACATATCT
66 TATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCT
45093654 CATTCGACTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
1 CATTCGACTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
*
45093719 TATATATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCT
66 TATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCT
45093778 CAT
1 CAT
45093781 ACATATTTCA
Statistics
Matches: 121, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
124 121 1.00
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (124 bp):
CATTCGACTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
TATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCT
Found at i:45093706 original size:48 final size:48
Alignment explanation
Indices: 45093654--45093871 Score: 391
Period size: 48 Copynumber: 4.5 Consensus size: 48
45093644 ATACATATCT
*
45093654 CATTCGACTTTACCACATATACATATCTCATACATATTTCACACTAGC
1 CATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGC
*
45093702 CATTCGGCTTTACCACATATATATATCTCATACATATTTCACACTAGC
1 CATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGC
45093750 CATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGC
1 CATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGC
* *
45093798 CATTCGGCTTTACCACATATACATTTCTCATACATATTTCACATTAGC
1 CATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGC
*
45093846 CATTCGGCTTTACCACATATATATAT
1 CATTCGGCTTTACCACATATACATAT
45093872 TTATCTTGTA
Statistics
Matches: 163, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 163 1.00
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
CATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGC
Found at i:45093711 original size:172 final size:172
Alignment explanation
Indices: 45093482--45093828 Score: 613
Period size: 172 Copynumber: 2.0 Consensus size: 172
45093472 TCACACTAGC
* *
45093482 CATTCGGCTTTACAACATATACATTTCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
1 CATTCGACTTTACAACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
* *
45093547 TATACATTTCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATA
66 TATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACA
* *
45093612 TATTTCACATTAGCCATTCGGCTTTACCTCATATACATATCT
131 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCT
*
45093654 CATTCGACTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
1 CATTCGACTTTACAACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
*
45093719 TATATATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACA
66 TATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACA
*
45093784 TATTTCACACTAGCCATTCGGCTTTACCACATATACATTTCT
131 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCT
45093826 CAT
1 CAT
45093829 ACATATTTCA
Statistics
Matches: 166, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
172 166 1.00
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (172 bp):
CATTCGACTTTACAACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
TATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACA
TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCT
Found at i:45093829 original size:220 final size:220
Alignment explanation
Indices: 45093434--45093871 Score: 795
Period size: 220 Copynumber: 2.0 Consensus size: 220
45093424 TCACACTAGC
*
45093434 CATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACAACA
1 CATTCGACTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACAACA
* *
45093499 TATACATTTCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATTTCTCATACA
66 TATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACA
*
45093564 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCAT
131 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCAT
*
45093629 TCGGCTTTACCTCATATACATATCT
196 TCGGCTTTACCACATATACATATCT
*
45093654 CATTCGACTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
1 CATTCGACTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACAACA
*
45093719 TATATATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACA
66 TATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACA
*
45093784 TATTTCACACTAGCCATTCGGCTTTACCACATATACATTTCTCATACATATTTCACATTAGCCAT
131 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCAT
*
45093849 TCGGCTTTACCACATATATATAT
196 TCGGCTTTACCACATATACATAT
45093872 TTATCTTGTA
Statistics
Matches: 209, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
220 209 1.00
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.36
Consensus pattern (220 bp):
CATTCGACTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACAACA
TATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACA
TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCAT
TCGGCTTTACCACATATACATATCT
Found at i:45095846 original size:28 final size:28
Alignment explanation
Indices: 45095780--45095936 Score: 215
Period size: 29 Copynumber: 5.5 Consensus size: 28
45095770 CATGAGATTG
* * **
45095780 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
45095809 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
45095837 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
*
45095866 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
45095895 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
45095923 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
45095937 GACTTACTAT
Statistics
Matches: 118, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
28 45 0.38
29 73 0.62
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:45095869 original size:57 final size:58
Alignment explanation
Indices: 45095780--45095935 Score: 219
Period size: 57 Copynumber: 2.7 Consensus size: 58
45095770 CATGAGATTG
* * * *
45095780 GCACTAAGTGTGCGGGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATAT-A
1 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCAAGTTTGATTATATAA
* *
45095837 GCACTAAGTGTGCGAGTTTGATTATGTAAGCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATGTAAGCACTAAGTGTGCAAGTTTGATTATATAA
*
45095895 GCACTAAGTGTGCGAGTTTGATTATATAA-CACTAAGTGTGC
1 GCACTAAGTGTGCGAGTTTGATTATGTAAGCACTAAGTGTGC
45095936 GGACTTACTA
Statistics
Matches: 90, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
57 58 0.64
58 32 0.36
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGTTTGATTATGTAAGCACTAAGTGTGCAAGTTTGATTATATAA
Found at i:45100231 original size:34 final size:34
Alignment explanation
Indices: 45100186--45100251 Score: 105
Period size: 34 Copynumber: 1.9 Consensus size: 34
45100176 CTTAGGCCCC
*
45100186 ACTGATACTGTTACTGAAATAGGCTCAGGCCCAG
1 ACTGATACTGTTACTGAAATAGGCTAAGGCCCAG
* *
45100220 ACTGTTACTGTTACTGAAATTGGCTAAGGCCC
1 ACTGATACTGTTACTGAAATAGGCTAAGGCCC
45100252 TAACTGAGAC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (34 bp):
ACTGATACTGTTACTGAAATAGGCTAAGGCCCAG
Found at i:45110212 original size:14 final size:14
Alignment explanation
Indices: 45110190--45110232 Score: 59
Period size: 14 Copynumber: 3.0 Consensus size: 14
45110180 TAGCCGTGTG
45110190 TTCTATTTTTCTTT
1 TTCTATTTTTCTTT
*
45110204 TTCTCTTTTTCTTT
1 TTCTATTTTTCTTT
*
45110218 TTCTTTCTTTTCTTT
1 TTCTAT-TTTTCTTT
45110233 GATAAATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
14 18 0.69
15 8 0.31
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.79
Consensus pattern (14 bp):
TTCTATTTTTCTTT
Found at i:45112500 original size:25 final size:25
Alignment explanation
Indices: 45112471--45112539 Score: 68
Period size: 25 Copynumber: 2.8 Consensus size: 25
45112461 CTCGTGTGAT
* *
45112471 CATACCAATTTATAGCTTGTG-AGAG
1 CATACCAATTTATAGCTCGAGTA-AG
* *
45112496 CATACCGATCTATAGCTCGAGTAAG
1 CATACCAATTTATAGCTCGAGTAAG
* *
45112521 CATACCAATTCACAGCTCG
1 CATACCAATTTATAGCTCG
45112540 TATGAGCATA
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
25 34 0.97
26 1 0.03
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (25 bp):
CATACCAATTTATAGCTCGAGTAAG
Found at i:45119503 original size:17 final size:18
Alignment explanation
Indices: 45119469--45119505 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
45119459 ATTAAATATT
*
45119469 TTATATTTGTTATCATAA
1 TTATATTCGTTATCATAA
45119487 TTATATTCGTT-TCATAA
1 TTATATTCGTTATCATAA
45119504 TT
1 TT
45119506 TTTTAAGCGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.30, C:0.08, G:0.05, T:0.57
Consensus pattern (18 bp):
TTATATTCGTTATCATAA
Found at i:45128528 original size:17 final size:17
Alignment explanation
Indices: 45128506--45128539 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
45128496 AAAATTATAT
*
45128506 TTTAAAAATGAAAAATA
1 TTTAAAAATCAAAAATA
*
45128523 TTTAAAATTCAAAAATA
1 TTTAAAAATCAAAAATA
45128540 AAGAATAGTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (17 bp):
TTTAAAAATCAAAAATA
Found at i:45132630 original size:65 final size:65
Alignment explanation
Indices: 45132554--45132682 Score: 249
Period size: 65 Copynumber: 2.0 Consensus size: 65
45132544 TAATATTTTC
45132554 ACATACTTATAATTTATCGATAATTTTTATTGTATGAAATATTTTATTACATAAACTTAGATTCA
1 ACATACTTATAATTTATCGATAATTTTTATTGTATGAAATATTTTATTACATAAACTTAGATTCA
*
45132619 ACATACTTATAATTTATGGATAATTTTTATTGTATGAAATATTTTATTACATAAACTTAGATTC
1 ACATACTTATAATTTATCGATAATTTTTATTGTATGAAATATTTTATTACATAAACTTAGATTC
45132683 TTAGTTAAAA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 63 1.00
ACGTcount: A:0.38, C:0.09, G:0.07, T:0.47
Consensus pattern (65 bp):
ACATACTTATAATTTATCGATAATTTTTATTGTATGAAATATTTTATTACATAAACTTAGATTCA
Found at i:45134212 original size:25 final size:25
Alignment explanation
Indices: 45134183--45134258 Score: 79
Period size: 25 Copynumber: 3.2 Consensus size: 25
45134173 GGTTGACATG
45134183 TTGTTGATAAACACTGACTTGACCT
1 TTGTTGATAAACACTGACTTGACCT
** * **
45134208 TTGTT--T--TTATTTTCTTGACCT
1 TTGTTGATAAACACTGACTTGACCT
45134229 TTGTTGATAAACACTGACTTGACCT
1 TTGTTGATAAACACTGACTTGACCT
45134254 TTGTT
1 TTGTT
45134259 TTTATTTTCT
Statistics
Matches: 37, Mismatches: 10, Indels: 8
0.67 0.18 0.15
Matches are distributed among these distances:
21 15 0.41
23 2 0.05
25 20 0.54
ACGTcount: A:0.21, C:0.17, G:0.14, T:0.47
Consensus pattern (25 bp):
TTGTTGATAAACACTGACTTGACCT
Found at i:45157772 original size:224 final size:224
Alignment explanation
Indices: 45157382--45157825 Score: 879
Period size: 224 Copynumber: 2.0 Consensus size: 224
45157372 TTAATTTTAC
45157382 CTGAAACTAGACTCACATATCTTCTTACCATAAAATTTAAAAAAAATTTAGTTTATCTAATAAGT
1 CTGAAACTAGACTCACATATCTTCTTACCATAAAATTTAAAAAAAATTTAGTTTATCTAATAAGT
45157447 ACAGTTTATTCTTCAAAGTTACCCCTTTTTTGCTGTCCGACAGTTCCAACCCCTCTTCACTAAAA
66 ACAGTTTATTCTTCAAAGTTACCCCTTTTTTGCTGTCCGACAGTTCCAACCCCTCTTCACTAAAA
45157512 ATTAATTACATCCTCATAAAGAATATGAATAATGTTCCTGTTTGTTTATTTAGAAAATAGACTCA
131 ATTAATTACATCCTCATAAAGAATATGAATAATGTTCCTGTTTGTTTATTTAGAAAATAGACTCA
45157577 TCAAAGATTCTGAGCATATAAACTAGATT
196 TCAAAGATTCTGAGCATATAAACTAGATT
45157606 CTGAAACTAGACTCACATATCTTCTTACCATAAAATTTAAAAAAAATTTAGTTTATCTAATAAGT
1 CTGAAACTAGACTCACATATCTTCTTACCATAAAATTTAAAAAAAATTTAGTTTATCTAATAAGT
*
45157671 ACAGTTTATTCTTCAAAGTTACCCCTTTTTTGCTGTCCGACAGTTCCGACCCCTCTTCACTAAAA
66 ACAGTTTATTCTTCAAAGTTACCCCTTTTTTGCTGTCCGACAGTTCCAACCCCTCTTCACTAAAA
45157736 ATTAATTACATCCTCATAAAGAATATGAATAATGTTCCTGTTTGTTTATTTAGAAAATAGACTCA
131 ATTAATTACATCCTCATAAAGAATATGAATAATGTTCCTGTTTGTTTATTTAGAAAATAGACTCA
45157801 TCAAAGATTCTGAGCATATAAACTA
196 TCAAAGATTCTGAGCATATAAACTA
45157826 TAACCCATAA
Statistics
Matches: 219, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
224 219 1.00
ACGTcount: A:0.36, C:0.19, G:0.09, T:0.36
Consensus pattern (224 bp):
CTGAAACTAGACTCACATATCTTCTTACCATAAAATTTAAAAAAAATTTAGTTTATCTAATAAGT
ACAGTTTATTCTTCAAAGTTACCCCTTTTTTGCTGTCCGACAGTTCCAACCCCTCTTCACTAAAA
ATTAATTACATCCTCATAAAGAATATGAATAATGTTCCTGTTTGTTTATTTAGAAAATAGACTCA
TCAAAGATTCTGAGCATATAAACTAGATT
Found at i:45158558 original size:29 final size:29
Alignment explanation
Indices: 45158526--45158585 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
45158516 AATAGTCATG
45158526 TAGATACAATTTATATAATATCAAAGCAT
1 TAGATACAATTTATATAATATCAAAGCAT
45158555 TAGATACAATTTATATAATATCAAAGCAT
1 TAGATACAATTTATATAATATCAAAGCAT
45158584 TA
1 TA
45158586 AAAGAATAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.48, C:0.10, G:0.07, T:0.35
Consensus pattern (29 bp):
TAGATACAATTTATATAATATCAAAGCAT
Found at i:45164028 original size:48 final size:48
Alignment explanation
Indices: 45163956--45164061 Score: 167
Period size: 48 Copynumber: 2.2 Consensus size: 48
45163946 CAAGATAAAT
* * *
45163956 ATATATATGTGTGGTAAAGACGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGACGAATGGCTAATGTGAAATATGTATGAG
*
45164004 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGACGAATGGCTAATGTGAAATATGTATGAG
*
45164052 ATGTGTATAT
1 ATATGTATAT
45164062 ATTGTGGTCG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 53 1.00
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.33
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGACGAATGGCTAATGTGAAATATGTATGAG
Found at i:45166745 original size:27 final size:27
Alignment explanation
Indices: 45166715--45166892 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
45166705 ATATTGAGTC
* * * *
45166715 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
45166742 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
45166769 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
45166797 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
45166824 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
45166851 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
45166878 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
45166893 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:45166854 original size:82 final size:81
Alignment explanation
Indices: 45166736--45166891 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
45166726 TGCTATATAA
* *
45166736 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
45166801 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
45166818 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
45166882 CACTTAGTGC
65 CACTTAGTGC
45166892 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:45171038 original size:27 final size:27
Alignment explanation
Indices: 45171007--45171184 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
45170997 TAAATTGTAC
45171007 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
45171034 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
45171060 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
45171088 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
45171116 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
45171143 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
45171170 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
45171185 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:45171121 original size:82 final size:81
Alignment explanation
Indices: 45171008--45171163 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
45170998 AAATTGTACA
* *
45171008 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
45171072 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
45171089 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
45171154 TGCGAGTTGA
65 TGCGAATTGA
45171164 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:45171175 original size:82 final size:81
Alignment explanation
Indices: 45171004--45171184 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
45170994 GATTAAATTG
* *
45171004 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
45171069 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
45171085 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
45171149 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
45171167 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
45171185 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:45175572 original size:27 final size:27
Alignment explanation
Indices: 45175542--45175719 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
45175532 ATATTGAGTC
* * * *
45175542 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
45175569 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
45175596 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
45175624 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
45175651 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
45175678 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
45175705 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
45175720 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:45175681 original size:82 final size:81
Alignment explanation
Indices: 45175563--45175718 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
45175553 TGCTATATAA
* *
45175563 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
45175628 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
45175645 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
45175709 CACTTAGTGC
65 CACTTAGTGC
45175719 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:45193537 original size:44 final size:44
Alignment explanation
Indices: 45193477--45193586 Score: 202
Period size: 44 Copynumber: 2.5 Consensus size: 44
45193467 ATGGCTGAAT
* *
45193477 AAATGGCACTATGTGTGCGATACTGATATAAGTTTGGTTTAATG
1 AAATAGCACTAAGTGTGCGATACTGATATAAGTTTGGTTTAATG
45193521 AAATAGCACTAAGTGTGCGATACTGATATAAGTTTGGTTTAATG
1 AAATAGCACTAAGTGTGCGATACTGATATAAGTTTGGTTTAATG
45193565 AAATAGCACTAAGTGTGCGATA
1 AAATAGCACTAAGTGTGCGATA
45193587 TTACTATAGC
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
44 64 1.00
ACGTcount: A:0.34, C:0.10, G:0.24, T:0.33
Consensus pattern (44 bp):
AAATAGCACTAAGTGTGCGATACTGATATAAGTTTGGTTTAATG
Found at i:45198879 original size:130 final size:130
Alignment explanation
Indices: 45198646--45198902 Score: 505
Period size: 130 Copynumber: 2.0 Consensus size: 130
45198636 TCTGGATATT
45198646 ATCAGTTACAAGTAAAAGATTCAGATATTCTGAAAACTACTTTCCAAACGAGGTACGACCTTTTC
1 ATCAGTTACAAGTAAAAGATTCAGATATTCTGAAAACTACTTTCCAAACGAGGTACGACCTTTTC
45198711 AAATTTCTAGTTATGCTTTTTGGATTAACGAATGCACCTGATGTTTTTATGGATTTGATGAATAG
66 AAATTTCTAGTTATGCTTTTTGGATTAACGAATGCACCTGATGTTTTTATGGATTTGATGAATAG
*
45198776 ATCAGTTGCAAGTAAAAGATTCAGATATTCTGAAAACTACTTTCCAAACGAGGTACGACCTTTTC
1 ATCAGTTACAAGTAAAAGATTCAGATATTCTGAAAACTACTTTCCAAACGAGGTACGACCTTTTC
45198841 AAATTTCTAGTTATGCTTTTTGGATTAACGAATGCACCTGATGTTTTTATGGATTTGATGAA
66 AAATTTCTAGTTATGCTTTTTGGATTAACGAATGCACCTGATGTTTTTATGGATTTGATGAA
45198903 CAGAATTTTC
Statistics
Matches: 126, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
130 126 1.00
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (130 bp):
ATCAGTTACAAGTAAAAGATTCAGATATTCTGAAAACTACTTTCCAAACGAGGTACGACCTTTTC
AAATTTCTAGTTATGCTTTTTGGATTAACGAATGCACCTGATGTTTTTATGGATTTGATGAATAG
Found at i:45199896 original size:13 final size:13
Alignment explanation
Indices: 45199878--45199902 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45199868 CTCAATGTGA
45199878 TTTGAATTCTGAT
1 TTTGAATTCTGAT
45199891 TTTGAATTCTGA
1 TTTGAATTCTGA
45199903 GTTGATAGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.08, G:0.16, T:0.52
Consensus pattern (13 bp):
TTTGAATTCTGAT
Found at i:45205535 original size:29 final size:28
Alignment explanation
Indices: 45205493--45205553 Score: 95
Period size: 29 Copynumber: 2.1 Consensus size: 28
45205483 GTGAGCATGA
*
45205493 ATATAAGGTGATTTGGGCCTAACGGGCC
1 ATATAAGGTGATTTGGGCCTAACAGGCC
*
45205521 ATATAGAGGTGATTTGGGCCTAATAGGCC
1 ATATA-AGGTGATTTGGGCCTAACAGGCC
45205550 ATAT
1 ATAT
45205554 GAATATGAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 5 0.17
29 25 0.83
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.28
Consensus pattern (28 bp):
ATATAAGGTGATTTGGGCCTAACAGGCC
Found at i:45205616 original size:29 final size:29
Alignment explanation
Indices: 45205500--45205616 Score: 137
Period size: 29 Copynumber: 4.0 Consensus size: 29
45205490 TGAATATAAG
* * * *
45205500 GTGATTTGGGCCTAACGGGCCATAT-AGAG
1 GTGAATTGGGCCTGATGGGCCATATGA-AT
* * *
45205529 GTGATTTGGGCCTAATAGGCCATATGAAT
1 GTGAATTGGGCCTGATGGGCCATATGAAT
*
45205558 ATGAATTGGGCCTGATGGGCCATATGAAT
1 GTGAATTGGGCCTGATGGGCCATATGAAT
*
45205587 GTGAATTGTGCCTGATGGGCCATATGAAT
1 GTGAATTGGGCCTGATGGGCCATATGAAT
45205616 G
1 G
45205617 AGATGGGCCA
Statistics
Matches: 78, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
29 77 0.99
30 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.28
Consensus pattern (29 bp):
GTGAATTGGGCCTGATGGGCCATATGAAT
Found at i:45211535 original size:8 final size:8
Alignment explanation
Indices: 45211522--45211556 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
45211512 GTAGATCGGC
45211522 AAAAGCCG
1 AAAAGCCG
45211530 AAAAGCCG
1 AAAAGCCG
* *
45211538 AAATGTCG
1 AAAAGCCG
45211546 AAAAGCCG
1 AAAAGCCG
45211554 AAA
1 AAA
45211557 GTTTGGCTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.51, C:0.20, G:0.23, T:0.06
Consensus pattern (8 bp):
AAAAGCCG
Found at i:45211810 original size:29 final size:29
Alignment explanation
Indices: 45211767--45211912 Score: 153
Period size: 29 Copynumber: 5.2 Consensus size: 29
45211757 TGTGAGCATG
* *
45211767 CATAT-AAGGTGATTTGGGCCTAACGGGC
1 CATATGAAGGTGAATTGGGCCTAATGGGC
* *
45211795 CATATAAAGGTGATTTGGGCCTAAT--GC
1 CATATGAAGGTGAATTGGGCCTAATGGGC
**
45211822 CATATGAATATGAATTGGGCCTAATGGGC
1 CATATGAAGGTGAATTGGGCCTAATGGGC
* *
45211851 CATATGAATGTGAATTGGGCCTGATGGGC
1 CATATGAAGGTGAATTGGGCCTAATGGGC
45211880 CATATGAA--TGAGA-TGGGCC-AAGTGGGC
1 CATATGAAGGTGA-ATTGGGCCTAA-TGGGC
45211907 CATATG
1 CATATG
45211913 CATGTATGTA
Statistics
Matches: 105, Mismatches: 8, Indels: 11
0.85 0.06 0.09
Matches are distributed among these distances:
26 1 0.01
27 43 0.41
28 6 0.06
29 55 0.52
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (29 bp):
CATATGAAGGTGAATTGGGCCTAATGGGC
Found at i:45211897 original size:56 final size:56
Alignment explanation
Indices: 45211780--45211917 Score: 158
Period size: 56 Copynumber: 2.5 Consensus size: 56
45211770 ATAAGGTGAT
* * * *
45211780 TTGGGCCTAACGGGCCATATAAAGGTGATTTGGGCCTAATGCCATATGAATATGAA
1 TTGGGCCTAATGGGCCATATGAATGTGAATTGGGCCTAATGCCATATGAATATGAA
*
45211836 TTGGGCCTAATGGGCCATATGAATGTGAATTGGGCCTGATGGGCCATATG-A-ATGAGA
1 TTGGGCCTAATGGGCCATATGAATGTGAATTGGGCCTAAT--GCCATATGAATATGA-A
*
45211893 -TGGGCC-AAGTGGGCCATATGCATGT
1 TTGGGCCTAA-TGGGCCATATGAATGT
45211918 ATGTAAGGGT
Statistics
Matches: 72, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
55 2 0.03
56 60 0.83
57 2 0.03
58 8 0.11
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (56 bp):
TTGGGCCTAATGGGCCATATGAATGTGAATTGGGCCTAATGCCATATGAATATGAA
Found at i:45214208 original size:20 final size:20
Alignment explanation
Indices: 45214185--45214230 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
45214175 AATCGGCACG
* *
45214185 AAGCCTACAATATCGATACA
1 AAGCCTACAATAACGACACA
*
45214205 AAGCCCACAATAACGACACA
1 AAGCCTACAATAACGACACA
*
45214225 CAGCCT
1 AAGCCT
45214231 TCGGTAACAT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.43, C:0.33, G:0.11, T:0.13
Consensus pattern (20 bp):
AAGCCTACAATAACGACACA
Found at i:45214303 original size:20 final size:20
Alignment explanation
Indices: 45214274--45214314 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
45214264 CGGGTCTATA
*
45214274 ATCGACACGAAGCCTACAAT
1 ATCGACACGAAGCCCACAAT
*
45214294 ATCGATACGAAGCCCACAAT
1 ATCGACACGAAGCCCACAAT
45214314 A
1 A
45214315 ACGGTACACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.41, C:0.29, G:0.15, T:0.15
Consensus pattern (20 bp):
ATCGACACGAAGCCCACAAT
Found at i:45214324 original size:98 final size:98
Alignment explanation
Indices: 45214154--45214392 Score: 370
Period size: 98 Copynumber: 2.4 Consensus size: 98
45214144 CGTGGCACAA
*
45214154 AGCCATCGATAACGGGTCTATAATCGGCACGAAGCCTACAATATCGATACAAAGCCCACAATAAC
1 AGCCATTGATAACGGGTCTATAATCGGCACGAAGCCTACAATATCGATACAAAGCCCACAATAAC
* * *
45214219 GACACACAGCCTTCGGTAACATGATCAGCACTC
66 GACACACAACCTTCGATAACATGACCAGCACTC
* * *
45214252 AGCCATTGAGAACGGGTCTATAATCGACACGAAGCCTACAATATCGATACGAAGCCCACAATAAC
1 AGCCATTGATAACGGGTCTATAATCGGCACGAAGCCTACAATATCGATACAAAGCCCACAATAAC
** * *
45214317 GGTACACAACCTTCGATAACATGACCGGTACTC
66 GACACACAACCTTCGATAACATGACCAGCACTC
*
45214350 AGCCATTGATAACGGGTCTATAATCGGCACAAAGCCTACAATA
1 AGCCATTGATAACGGGTCTATAATCGGCACGAAGCCTACAATA
45214393 ACAGCACACA
Statistics
Matches: 127, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
98 127 1.00
ACGTcount: A:0.36, C:0.28, G:0.18, T:0.18
Consensus pattern (98 bp):
AGCCATTGATAACGGGTCTATAATCGGCACGAAGCCTACAATATCGATACAAAGCCCACAATAAC
GACACACAACCTTCGATAACATGACCAGCACTC
Found at i:45214482 original size:27 final size:26
Alignment explanation
Indices: 45214443--45214525 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
45214433 TTGACCGGTC
*
45214443 AACAGATATTGTGGCAAAGTCACCAG
1 AACAGATATTGTGGCAAAGCCACCAG
* *
45214469 ATACAGATATTGTGGCAGAGCCACTAG
1 A-ACAGATATTGTGGCAAAGCCACCAG
* *
45214496 AATAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAAAGCCACCAG
45214523 AAC
1 AAC
45214526 GCTTCCTTAA
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
26 7 0.15
27 41 0.85
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.22
Consensus pattern (26 bp):
AACAGATATTGTGGCAAAGCCACCAG
Found at i:45214780 original size:27 final size:27
Alignment explanation
Indices: 45214750--45215242 Score: 491
Period size: 27 Copynumber: 18.2 Consensus size: 27
45214740 GGGCAAAATA
* * * * *
45214750 GTAATTTTACCCCACAAGGTTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
**
45214777 GTAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCG
45214804 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
* * *
45214831 GTAATTTTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCG
* * *
45214858 GTAATTCTACCATATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCG
* * *
45214885 ATAATTCTACCCTACAAGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTCG
*
45214912 GTAATTCTACCTTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
*
45214939 GTAATTCTATCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
* * * **
45214966 ATAATTCTACCTTACAGGGATATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCG
* * *
45214993 GTAATTCTACCTTATAGAGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
* * * *
45215020 GTATTTCTACCCTATAAGAGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
* * *
45215047 GTAATTCTACCCTACAAGGGTGTTTCA
1 GTAATTCTACCCTACAGGGGTATTTCG
**
45215074 GTAAATTCTACCCTACAGGGGTATTTTA
1 GT-AATTCTACCCTACAGGGGTATTTCG
*
45215102 GTAATTCTACCTTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
* * *
45215129 GTATTTCTACCCTACAAGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTCG
** * * **
45215156 GTAGCTCTACACTACAAGGGTATTTTT
1 GTAATTCTACCCTACAGGGGTATTTCG
* * * **
45215183 GTAATTTTACCCTATAGTGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCG
* * * *
45215210 GTAATTCTACCATATAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCG
45215237 GTAATT
1 GTAATT
45215243 GTACAAATCG
Statistics
Matches: 390, Mismatches: 75, Indels: 2
0.84 0.16 0.00
Matches are distributed among these distances:
27 366 0.94
28 24 0.06
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCG
Found at i:45215258 original size:27 final size:27
Alignment explanation
Indices: 45215226--45215566 Score: 318
Period size: 27 Copynumber: 12.7 Consensus size: 27
45215216 CTACCATATA
*
45215226 AGGGTATTTCAGTAATTGTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * **
45215253 ATGGTATTTCAATAATTTCGCAAACTC-
1 AGGGTATTTCAGTAATTTTACAAA-TCG
* **
45215280 AGGGTATTTCGGTAATTTTACAAATTA
1 AGGGTATTTCAGTAATTTTACAAATCG
*
45215307 AGGGTATTTCAGTAATTTTAC-AATCA
1 AGGGTATTTCAGTAATTTTACAAATCG
** * * *
45215333 ACAGTATTTCAATAATTTTATAAACCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * *
45215360 GGGGTACTTT-GGTAATTTTACAAGTCG
1 AGGGTA-TTTCAGTAATTTTACAAATCG
* *
45215387 AAGGTATTTTAGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
*
45215414 AGGGTATTTCAGTAATTTTGCAAA-CTG
1 AGGGTATTTCAGTAATTTTACAAATC-G
* * *
45215441 AGGGTGTTTCGGTAATTTTACAAATAG
1 AGGGTATTTCAGTAATTTTACAAATCG
45215468 AGGGTATTTCAGTAATTTTAC-AATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * *
45215494 ACGGTATTTCGGTAATTTTATAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * *
45215521 GGGGTACTTT-GGTAATTTTACAACT-G
1 AGGGTA-TTTCAGTAATTTTACAAATCG
* *
45215547 GGGGTATTTCATTAATTTTA
1 AGGGTATTTCAGTAATTTTA
45215567 GTAAACTAAA
Statistics
Matches: 254, Mismatches: 50, Indels: 21
0.78 0.15 0.06
Matches are distributed among these distances:
25 3 0.01
26 63 0.25
27 180 0.71
28 8 0.03
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTACAAATCG
Found at i:45215412 original size:161 final size:161
Alignment explanation
Indices: 45215228--45215543 Score: 508
Period size: 161 Copynumber: 2.0 Consensus size: 161
45215218 ACCATATAAG
*
45215228 GGTATTTCAGTAATTGTACAAATCGATGGTATTTCAATAATTTCGCAAACTCAGGGTATTTCGGT
1 GGTATTTCAGTAATTGTACAAATCGAGGGTATTTCAATAATTTCGCAAACTCAGGGTATTTCGGT
45215293 AATTTTACAAATTA-AGGGTATTTCAGTAATTTTACAATCAACAGTATTTCAATAATTTTATAAA
66 AATTTTACAAA-TAGAGGGTATTTCAGTAATTTTACAATCAACAGTATTTCAATAATTTTATAAA
45215357 CCGGGGGTACTTTGGTAATTTTACAAGTCGAA
130 CCGGGGGTACTTTGGTAATTTTACAAGTCGAA
* * * * * *
45215389 GGTATTTTAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTGCAAACTGAGGGTGTTTCGGT
1 GGTATTTCAGTAATTGTACAAATCGAGGGTATTTCAATAATTTCGCAAACTCAGGGTATTTCGGT
* * ** *
45215454 AATTTTACAAATAGAGGGTATTTCAGTAATTTTACAATCGACGGTATTTCGGTAATTTTATAAAT
66 AATTTTACAAATAGAGGGTATTTCAGTAATTTTACAATCAACAGTATTTCAATAATTTTATAAAC
45215519 CGGGGGTACTTTGGTAATTTTACAA
131 CGGGGGTACTTTGGTAATTTTACAA
45215544 CTGGGGGTAT
Statistics
Matches: 142, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
160 2 0.01
161 140 0.99
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (161 bp):
GGTATTTCAGTAATTGTACAAATCGAGGGTATTTCAATAATTTCGCAAACTCAGGGTATTTCGGT
AATTTTACAAATAGAGGGTATTTCAGTAATTTTACAATCAACAGTATTTCAATAATTTTATAAAC
CGGGGGTACTTTGGTAATTTTACAAGTCGAA
Found at i:45218034 original size:98 final size:98
Alignment explanation
Indices: 45217860--45218098 Score: 343
Period size: 98 Copynumber: 2.4 Consensus size: 98
45217850 CGTTGCACAA
* * * *
45217860 AGCCATCGATAACGGGTCCATAATCGGCACGAAGCCCACAATATCAATACGAAGCCCACAATAAT
1 AGCCATTGATAACGGGTCTATAATCGGCACGAAGCCTACAATATCAATACGAAGCCCACAATAAC
* * *
45217925 GGCACACAGCCTTCGGTAACATGATCGATACTC
66 GGCACACAGCCTTCGATAACATGACCGACACTC
* *
45217958 AGCCATTGATAACGGGTCTATAATCGGTACGAAGCCTACAATCTCAATACGAAGCCCACAATAAC
1 AGCCATTGATAACGGGTCTATAATCGGCACGAAGCCTACAATATCAATACGAAGCCCACAATAAC
* * *
45218023 GGCACATAGCCTTTGATAACATGACCGGCACTC
66 GGCACACAGCCTTCGATAACATGACCGACACTC
* * *
45218056 AACCATTGATAACGGGTCTATAATCGGCACAAAACCTACAATA
1 AGCCATTGATAACGGGTCTATAATCGGCACGAAGCCTACAATA
45218099 ACGGCACACA
Statistics
Matches: 124, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
98 124 1.00
ACGTcount: A:0.36, C:0.28, G:0.18, T:0.19
Consensus pattern (98 bp):
AGCCATTGATAACGGGTCTATAATCGGCACGAAGCCTACAATATCAATACGAAGCCCACAATAAC
GGCACACAGCCTTCGATAACATGACCGACACTC
Found at i:45218199 original size:27 final size:26
Alignment explanation
Indices: 45218152--45218231 Score: 106
Period size: 27 Copynumber: 3.0 Consensus size: 26
45218142 ATCGGTCAAT
* *
45218152 AGATATTGTGACAAAGTCACCAGATAC
1 AGATATTGTGGCAAAGCCACCAGA-AC
*
45218179 AGATATTGTGGCAGAGCCACCAGAAC
1 AGATATTGTGGCAAAGCCACCAGAAC
*
45218205 AGATATTTGTGGCATAGCCACCAGAAC
1 AGATA-TTGTGGCAAAGCCACCAGAAC
45218232 GCTTCTTTCA
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 7 0.15
27 41 0.85
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (26 bp):
AGATATTGTGGCAAAGCCACCAGAAC
Found at i:45218488 original size:27 final size:27
Alignment explanation
Indices: 45218458--45218946 Score: 516
Period size: 27 Copynumber: 18.1 Consensus size: 27
45218448 GCAAAATGGG
* * * *
45218458 AATTTTACCCCACAAGGGTATCTCGGT
1 AATTCTACCCTACAAGGGTATTTCAGT
* * * *
45218485 AATTTTACCTTATAGGGGTATTTCAGT
1 AATTCTACCCTACAAGGGTATTTCAGT
*
45218512 AATTCTACCCTAC-AGGTGTATTTCGGT
1 AATTCTACCCTACAAGG-GTATTTCAGT
* * *
45218539 AATTCTACCTTACAGGGGTATTCCAGT
1 AATTCTACCCTACAAGGGTATTTCAGT
* *
45218566 AATTCTACCCTACAGGGGTATTTCGGT
1 AATTCTACCCTACAAGGGTATTTCAGT
* * *
45218593 AATTCTACCTTATAGGGGTATTTCAGT
1 AATTCTACCCTACAAGGGTATTTCAGT
* *
45218620 AATTCTACCCTACAGGGGTATTTCGGT
1 AATTCTACCCTACAAGGGTATTTCAGT
* * * *
45218647 AATTCTACCTTATAGGGGTATTTTAGT
1 AATTCTACCCTACAAGGGTATTTCAGT
* * * **
45218674 AATTCTACCTTATAGGGGTATTTTGGT
1 AATTCTACCCTACAAGGGTATTTCAGT
* * *
45218701 ATTTCTATCCTACAAGGGTATTTTAGT
1 AATTCTACCCTACAAGGGTATTTCAGT
45218728 AATTCTACCCTACAAGGGTATTTCAGT
1 AATTCTACCCTACAAGGGTATTTCAGT
* * * *
45218755 AATTTTACCTTACAGGGGTATTTCGGT
1 AATTCTACCCTACAAGGGTATTTCAGT
45218782 AATTCTACCCTACAAGGGTATTTCAGT
1 AATTCTACCCTACAAGGGTATTTCAGT
* * * *
45218809 AATTCTACCTTATAGGGGTATTTTAGT
1 AATTCTACCCTACAAGGGTATTTCAGT
* **
45218836 AATTCTACCCTACAAAGGTATTTTGGT
1 AATTCTACCCTACAAGGGTATTTCAGT
*
45218863 ATTTCTACCCTACAAGGGTATTTC-GAT
1 AATTCTACCCTACAAGGGTATTTCAG-T
* * *
45218890 AATTCTACCCTATAATGGTATTTTAG-
1 AATTCTACCCTACAAGGGTATTTCAGT
*
45218916 AATTCTACCCGACAAGGGTATTTCAGT
1 AATTCTACCCTACAAGGGTATTTCAGT
45218943 AATT
1 AATT
45218947 TTACAAATCG
Statistics
Matches: 391, Mismatches: 66, Indels: 10
0.84 0.14 0.02
Matches are distributed among these distances:
26 25 0.06
27 363 0.93
28 3 0.01
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (27 bp):
AATTCTACCCTACAAGGGTATTTCAGT
Found at i:45218521 original size:54 final size:54
Alignment explanation
Indices: 45218458--45218946 Score: 599
Period size: 54 Copynumber: 9.1 Consensus size: 54
45218448 GCAAAATGGG
* * * * *
45218458 AATTTTACCCCACAAGGGTATCTCGGTAATTTTACCTTATAGGGGTATTTCAGT
1 AATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAGT
*
45218512 AATTCTACCCTAC-AGGTGTATTTCGGTAATTCTACCTTACAGGGGTATTCCAGT
1 AATTCTACCCTACAAGG-GTATTTCGGTAATTCTACCTTACAGGGGTATTTCAGT
* *
45218566 AATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTATAGGGGTATTTCAGT
1 AATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAGT
* * *
45218620 AATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTATAGGGGTATTTTAGT
1 AATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAGT
* * * * * * *
45218674 AATTCTACCTTATAGGGGTATTTTGGTATTTCTATCC-TACAAGGGTATTTTAGT
1 AATTCTACCCTACAAGGGTATTTCGGTAATTCTA-CCTTACAGGGGTATTTCAGT
* * *
45218728 AATTCTACCCTACAAGGGTATTTCAGTAATTTTACCTTACAGGGGTATTTCGGT
1 AATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAGT
* * *
45218782 AATTCTACCCTACAAGGGTATTTCAGTAATTCTACCTTATAGGGGTATTTTAGT
1 AATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAGT
* * * * *
45218836 AATTCTACCCTACAAAGGTATTTTGGTATTTCTACCCTACAAGGGTATTTC-GAT
1 AATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAG-T
* * ** ** *
45218890 AATTCTACCCTATAATGGTATTTTAG-AATTCTACCCGACAAGGGTATTTCAGT
1 AATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAGT
45218943 AATT
1 AATT
45218947 TTACAAATCG
Statistics
Matches: 386, Mismatches: 43, Indels: 13
0.87 0.10 0.03
Matches are distributed among these distances:
53 33 0.09
54 349 0.90
55 4 0.01
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (54 bp):
AATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAGT
Found at i:45218614 original size:81 final size:81
Alignment explanation
Indices: 45218458--45218946 Score: 586
Period size: 81 Copynumber: 6.0 Consensus size: 81
45218448 GCAAAATGGG
* * * * * * *
45218458 AATTTTACCCCACAAGGGTATCTCGGTAATTTTACCTTATAGGGGTATTTCAGTAATTCTACCCT
1 AATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCAGTAATTCTACCTT
*
45218523 ACAGGTGTATTTCGGT
66 ACAGGGGTATTTCGGT
* * * * *
45218539 AATTCTACCTTACAGGGGTATTCCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTT
1 AATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCAGTAATTCTACCTT
* *
45218604 ATAGGGGTATTTCAGT
66 ACAGGGGTATTTCGGT
* * * *
45218620 AATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTATAGGGGTATTTTAGTAATTCTACCTT
1 AATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCAGTAATTCTACCTT
* *
45218685 ATAGGGGTATTTTGGT
66 ACAGGGGTATTTCGGT
* * * * * *
45218701 ATTTCTATCCTACAAGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTCAGTAATTTTACCTT
1 AATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCAGTAATTCTACCTT
45218766 ACAGGGGTATTTCGGT
66 ACAGGGGTATTTCGGT
* * *
45218782 AATTCTACCCTACAAGGGTATTTCAGTAATTCTACCTTATAGGGGTATTTTAGTAATTCTACCCT
1 AATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCAGTAATTCTACCTT
** *
45218847 ACAAAGGTATTTTGGT
66 ACAGGGGTATTTCGGT
* ** * *
45218863 ATTTCTACCCTACAAGGGTATTTC-GATAATTCTACCCTATAATGGTATTTTAG-AATTCTACCC
1 AATTCTACCCTACAAGGGTATTTCAG-TAATTCTACCCTATAGGGGTATTTCAGTAATTCTACCT
* * *
45218926 GACAAGGGTATTTCAGT
65 TACAGGGGTATTTCGGT
45218943 AATT
1 AATT
45218947 TTACAAATCG
Statistics
Matches: 350, Mismatches: 57, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
80 27 0.08
81 323 0.92
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (81 bp):
AATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCAGTAATTCTACCTT
ACAGGGGTATTTCGGT
Found at i:45218960 original size:27 final size:27
Alignment explanation
Indices: 45218930--45219270 Score: 340
Period size: 27 Copynumber: 12.7 Consensus size: 27
45218920 CTACCCGACA
45218930 AGGGTATTTCAGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * **
45218957 AGGGTATTTCAGAAATTTTGCAAATTA
1 AGGGTATTTCAGTAATTTTACAAATCG
* * *
45218984 AGGGTATTTCGGTAATTTTAAAAATTG
1 AGGGTATTTCAGTAATTTTACAAATCG
*
45219011 AGGGTATTTTAGTAATTTTAC-AATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * * *
45219037 ACGATATTTC-GATAATTTTATAAACCG
1 AGGGTATTTCAG-TAATTTTACAAATCG
* * * *
45219064 GGGGTACTTT-GGTAATTTTACAAGTCA
1 AGGGTA-TTTCAGTAATTTTACAAATCG
*
45219091 AGGGTATTTCAGTAATTTTACAAATCA
1 AGGGTATTTCAGTAATTTTACAAATCG
*
45219118 AGGGTATTTCAGTAATTTTGCAAA-CTG
1 AGGGTATTTCAGTAATTTTACAAATC-G
45219145 AGGGTATTTC-GATAATTTTACAAATCG
1 AGGGTATTTCAG-TAATTTTACAAATCG
45219172 AGGGTATTTCAGTAATTTTAC-AATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * *
45219198 ATGGTATTTCGGTAATTTTATAAA-CTG
1 AGGGTATTTCAGTAATTTTACAAATC-G
* * *
45219225 GGGGTACTTT-GGTAATTTTAC-AATTG
1 AGGGTA-TTTCAGTAATTTTACAAATCG
*
45219251 GGGGTATTTCAGTAATTTTA
1 AGGGTATTTCAGTAATTTTA
45219271 GTAAACTCAA
Statistics
Matches: 261, Mismatches: 39, Indels: 29
0.79 0.12 0.09
Matches are distributed among these distances:
25 4 0.02
26 66 0.25
27 182 0.70
28 9 0.03
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTACAAATCG
Found at i:45219095 original size:161 final size:160
Alignment explanation
Indices: 45218928--45219270 Score: 542
Period size: 161 Copynumber: 2.1 Consensus size: 160
45218918 TTCTACCCGA
* *
45218928 CAAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGAAATTTTGCAAATTAAGGGTATTT
1 CAAGGGTATTTCAGTAATTTTACAAATCAAGGGTATTTCAGAAATTTTGCAAACTAAGGGTATTT
* * *
45218993 CGGTAATTTTAAAAATTGAGGGTATTTTAGTAATTTTACAATCGACGATATTTCGATAATTTTAT
66 CGATAATTTTAAAAATCGAGGGTATTTCAGTAATTTTACAATCGACGATATTTCGATAATTTTAT
45219058 AAACCGGGGGTACTTTGGTAATTTTACAAGT
131 AAACCGGGGGTACTTTGGTAATTTTACAA-T
* *
45219089 CAAGGGTATTTCAGTAATTTTACAAATCAAGGGTATTTCAGTAATTTTGCAAACTGAGGGTATTT
1 CAAGGGTATTTCAGTAATTTTACAAATCAAGGGTATTTCAGAAATTTTGCAAACTAAGGGTATTT
* * * *
45219154 CGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGATGGTATTTCGGTAATTTTAT
66 CGATAATTTTAAAAATCGAGGGTATTTCAGTAATTTTACAATCGACGATATTTCGATAATTTTAT
*
45219219 AAACTGGGGGTACTTTGGTAATTTTACAAT
131 AAACCGGGGGTACTTTGGTAATTTTACAAT
***
45219249 TGGGGGTATTTCAGTAATTTTA
1 CAAGGGTATTTCAGTAATTTTA
45219271 GTAAACTCAA
Statistics
Matches: 167, Mismatches: 15, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
160 20 0.12
161 147 0.88
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (160 bp):
CAAGGGTATTTCAGTAATTTTACAAATCAAGGGTATTTCAGAAATTTTGCAAACTAAGGGTATTT
CGATAATTTTAAAAATCGAGGGTATTTCAGTAATTTTACAATCGACGATATTTCGATAATTTTAT
AAACCGGGGGTACTTTGGTAATTTTACAAT
Found at i:45222876 original size:42 final size:41
Alignment explanation
Indices: 45222814--45223012 Score: 146
Period size: 42 Copynumber: 4.6 Consensus size: 41
45222804 TAAGATGCCA
* *
45222814 ATGCCATGTCCCAGACATGGTCTTACATGAGATCTCACATCG
1 ATGCCATATCCCAGATATGGTCTTACATGA-ATCTCACATCG
* ***
45222856 ATGCCATATCCCAGATATGGTCTTATATGAATTCTCGTTTCG
1 ATGCCATATCCCAGATATGGTCTTACATGAA-TCTCACATCG
* * ** * * * * *
45222898 ACGCCATGTCCCAGACGTGCTCTTACCGTAAATCTCATATCC
1 ATGCCATATCCCAGATATGGTCTTA-CATGAATCTCACATCG
* *
45222940 ACGCCATATCCCAGATATGGTCTTACATGATAACTCATACTAATGCCG
1 ATGCCATATCCCAGATATGGTCTTACATGA-ATCTC--AC--AT--CG
*
45222988 ATGCCATATCCCAAATATGGTCTTA
1 ATGCCATATCCCAGATATGGTCTTA
45223013 TACGGGACCC
Statistics
Matches: 120, Mismatches: 28, Indels: 12
0.75 0.17 0.08
Matches are distributed among these distances:
41 4 0.03
42 86 0.72
43 3 0.03
44 1 0.01
46 2 0.02
48 24 0.20
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.30
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACATGAATCTCACATCG
Found at i:45222957 original size:84 final size:84
Alignment explanation
Indices: 45222816--45222969 Score: 220
Period size: 84 Copynumber: 1.8 Consensus size: 84
45222806 AGATGCCAAT
* * * *
45222816 GCCATGTCCCAGACATGGTCTTACATGAGATCTCACATCGATGCCATATCCCAGATATGGTCTTA
1 GCCATGTCCCAGACATGCTCTTACATGAAATCTCACATCCACGCCATATCCCAGATATGGTCTTA
*
45222881 TATGAATTCTCGTTTCGAC
66 CATGAATTCTCGTTTCGAC
* * *
45222900 GCCATGTCCCAGACGTGCTCTTAC-CGTAAATCTCATATCCACGCCATATCCCAGATATGGTCTT
1 GCCATGTCCCAGACATGCTCTTACATG-AAATCTCACATCCACGCCATATCCCAGATATGGTCTT
45222964 ACATGA
65 ACATGA
45222970 TAACTCATAC
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
83 1 0.02
84 60 0.98
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (84 bp):
GCCATGTCCCAGACATGCTCTTACATGAAATCTCACATCCACGCCATATCCCAGATATGGTCTTA
CATGAATTCTCGTTTCGAC
Found at i:45235528 original size:39 final size:39
Alignment explanation
Indices: 45235435--45235611 Score: 221
Period size: 39 Copynumber: 4.5 Consensus size: 39
45235425 ACAAAGCATG
* * * *
45235435 CGGGACTTTAAGCCCAGATGTAATACCAGCAC-AAAGCCTT
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
* *
45235475 CAGGACTTAGCCCGGATATAACACCAGCACGAATGCATT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* * *
45235514 CGGGACGTAGCCCGGATATAACACTAGCACGAACGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
45235553 CGGGACTTAGCTCGGATATAACACCAGTACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
45235592 CGGGAATTAGCCCGGATATA
1 CGGGACTTAGCCCGGATATA
45235612 TATCTCACAT
Statistics
Matches: 118, Mismatches: 18, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
38 19 0.16
39 94 0.80
40 5 0.04
ACGTcount: A:0.31, C:0.27, G:0.23, T:0.19
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:45239785 original size:13 final size:13
Alignment explanation
Indices: 45239767--45239793 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
45239757 ACACACCTTG
45239767 ATTCAAACATTTC
1 ATTCAAACATTTC
45239780 ATTCAAACATTTC
1 ATTCAAACATTTC
45239793 A
1 A
45239794 ACTTTTCATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.22, G:0.00, T:0.37
Consensus pattern (13 bp):
ATTCAAACATTTC
Found at i:45242978 original size:49 final size:47
Alignment explanation
Indices: 45242710--45243287 Score: 849
Period size: 47 Copynumber: 12.4 Consensus size: 47
45242700 CCCTTCGGGA
* * * * * *
45242710 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
45242757 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
45242804 CTTATCACATATATACACTTTCTCATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
45242851 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45242898 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
45242945 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
45242994 CTTATCAC----AT--ACTTTCACATTCATCACATCGGCTATTAGG-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45243034 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
45243081 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
45243130 CTTATCAC----AT--ACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45243171 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
45243218 CTTATCACATATATATACACTTTCACATTCATCACATTGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45243267 CTTATCACATATATACACTTT
1 CTTATCACATATATACACTTT
45243288 ATCTTGGCCG
Statistics
Matches: 484, Mismatches: 28, Indels: 38
0.88 0.05 0.07
Matches are distributed among these distances:
40 8 0.02
41 63 0.13
43 4 0.01
44 2 0.00
45 2 0.00
46 29 0.06
47 241 0.50
49 135 0.28
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:45243252 original size:273 final size:273
Alignment explanation
Indices: 45242761--45243277 Score: 921
Period size: 273 Copynumber: 1.9 Consensus size: 273
45242751 CTCGGCCCTG
45242761 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
*
45242826 TCATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCT
66 ACATTCATCACATCGGCCATTAGGCCTTATCAC--A-ATA-ACTTTCACATTCATCACATCGGCT
45242891 ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
127 ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
*
45242956 TATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATACTTTCACATTCATCAC
192 TATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATACTTTCACATTCATCAC
45243021 ATCGGCTATTAGGCTTA
257 ATCGGCTATTAGGCTTA
45243038 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTT
* *
45243103 TCACATTCATCACATTGGCCATTCGGCCTTATCAC-AT-ACTTTCACATTCATCACATCGGCTAT
64 TCACATTCATCACATCGGCCATTAGGCCTTATCACAATAACTTTCACATTCATCACATCGGCTAT
45243166 TAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
129 TAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
*
45243231 TATACACTTTCACATTCATCACATTGGCTATTAGGCCTTATCACATA
194 TATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATA
45243278 TATACACTTT
Statistics
Matches: 233, Mismatches: 5, Indels: 8
0.95 0.02 0.03
Matches are distributed among these distances:
273 136 0.58
275 2 0.01
277 51 0.22
279 44 0.19
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.34
Consensus pattern (273 bp):
TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
ACATTCATCACATCGGCCATTAGGCCTTATCACAATAACTTTCACATTCATCACATCGGCTATTA
GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
TACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATACTTTCACATTCATCACATCG
GCTATTAGGCTTA
Found at i:45246133 original size:39 final size:39
Alignment explanation
Indices: 45246042--45246295 Score: 377
Period size: 39 Copynumber: 6.5 Consensus size: 39
45246032 ACAAAGCATG
* * *
45246042 CGGGACTTTAAGCCCGGATGTAATACCAGCAC-AAAGCCTT
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
*
45246082 CAGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
45246121 CGGGACTCAGCCCGGGTATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
**
45246160 CGGGACTTAGCTTGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
45246199 CGGGACTTAGCCCTGATATAACACCAGCATGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
45246238 C-GGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
45246276 CGGGAATTAGCCCGGATATA
1 CGGGACTTAGCCCGGATATA
45246296 TATCTCACAC
Statistics
Matches: 194, Mismatches: 18, Indels: 5
0.89 0.08 0.02
Matches are distributed among these distances:
38 56 0.29
39 133 0.69
40 5 0.03
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.20
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:45248137 original size:56 final size:56
Alignment explanation
Indices: 45248051--45248170 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
45248041 ACAAGGGATG
45248051 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
45248107 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
45248163 ATGGGCAA
1 ATGGGCAA
45248171 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:45249442 original size:79 final size:81
Alignment explanation
Indices: 45249306--45249488 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
45249296 TCGAATGATG
* *
45249306 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
45249370 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
45249385 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
45249447 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
45249465 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
45249489 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:45249504 original size:40 final size:40
Alignment explanation
Indices: 45249307--45249490 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
45249297 CGAATGATGT
* * * *
45249307 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
45249347 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
45249387 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
45249425 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
45249466 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
45249491 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:45249512 original size:79 final size:79
Alignment explanation
Indices: 45249359--45249523 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
45249349 GGACTAAGAT
* **
45249359 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
45249424 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
45249438 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
45249501 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
45249517 CCGAAGG
1 CCGAAGG
45249524 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:45266298 original size:21 final size:21
Alignment explanation
Indices: 45266272--45266316 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
45266262 CATGTTTCAA
45266272 TTGCTTTAACTTATTAATTCC
1 TTGCTTTAACTTATTAATTCC
45266293 TTGCTTTAACTTATTAATTCC
1 TTGCTTTAACTTATTAATTCC
45266314 TTG
1 TTG
45266317 AATCATAGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.22, C:0.18, G:0.07, T:0.53
Consensus pattern (21 bp):
TTGCTTTAACTTATTAATTCC
Found at i:45268463 original size:6 final size:6
Alignment explanation
Indices: 45268449--45268487 Score: 51
Period size: 6 Copynumber: 6.2 Consensus size: 6
45268439 TTAAATTCTG
*
45268449 TTTTGT TTTTAT TTTTAT TTTTATT TGTTTAT TTTTAT T
1 TTTTAT TTTTAT TTTTAT TTTTA-T T-TTTAT TTTTAT T
45268488 CCCACAACAG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
6 22 0.73
7 4 0.13
8 4 0.13
ACGTcount: A:0.13, C:0.00, G:0.05, T:0.82
Consensus pattern (6 bp):
TTTTAT
Found at i:45268481 original size:14 final size:13
Alignment explanation
Indices: 45268449--45268487 Score: 53
Period size: 14 Copynumber: 3.0 Consensus size: 13
45268439 TTAAATTCTG
*
45268449 TTTTGTTTTTA-T
1 TTTTATTTTTATT
45268461 TTTTATTTTTATT
1 TTTTATTTTTATT
45268474 TGTTTATTTTTATT
1 T-TTTATTTTTATT
45268488 CCCACAACAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 10 0.42
13 2 0.08
14 12 0.50
ACGTcount: A:0.13, C:0.00, G:0.05, T:0.82
Consensus pattern (13 bp):
TTTTATTTTTATT
Found at i:45269061 original size:19 final size:18
Alignment explanation
Indices: 45269034--45269070 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
45269024 AATTTTAGGG
*
45269034 CTTTTATTCTTAGATTTTT
1 CTTTCATTCTTAG-TTTTT
45269053 CTTTCATTCTTAGTTTTT
1 CTTTCATTCTTAGTTTTT
45269071 ACTTAGGTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.14, C:0.14, G:0.05, T:0.68
Consensus pattern (18 bp):
CTTTCATTCTTAGTTTTT
Found at i:45271495 original size:15 final size:15
Alignment explanation
Indices: 45271475--45271504 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
45271465 ATGAAAATAT
*
45271475 ATTTGAATGAGTTTA
1 ATTTGAATAAGTTTA
45271490 ATTTGAATAAGTTTA
1 ATTTGAATAAGTTTA
45271505 GATCACGAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.17, T:0.47
Consensus pattern (15 bp):
ATTTGAATAAGTTTA
Found at i:45272066 original size:56 final size:56
Alignment explanation
Indices: 45271970--45272177 Score: 308
Period size: 56 Copynumber: 3.7 Consensus size: 56
45271960 GAAGTATATG
* * * *
45271970 TGGCATCGATATGTGATTCTGATATATGTGTCCGATTAAGTCCACGTTTCATACAT
1 TGGCATCGATATGTGATTCCGATATATGTGTGCGAGTAAGTCCACGTTTCATACGT
* * * *
45272026 TGGCTTCGATATGTGATTTCGATATATGTGTACGAGTAAGTCCATGTTTCATACGT
1 TGGCATCGATATGTGATTCCGATATATGTGTGCGAGTAAGTCCACGTTTCATACGT
* * *
45272082 TTGCATCGATATGAGATTCCGATATATGTGTGCGAGTAAGTCCACATTTCATACGT
1 TGGCATCGATATGTGATTCCGATATATGTGTGCGAGTAAGTCCACGTTTCATACGT
*
45272138 TGGCATCGATATGTGATTCCGATATATGTGTGTGAGTAAG
1 TGGCATCGATATGTGATTCCGATATATGTGTGCGAGTAAG
45272178 ACCCTCTTTG
Statistics
Matches: 135, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
56 135 1.00
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.37
Consensus pattern (56 bp):
TGGCATCGATATGTGATTCCGATATATGTGTGCGAGTAAGTCCACGTTTCATACGT
Found at i:45272200 original size:112 final size:111
Alignment explanation
Indices: 45271969--45272211 Score: 315
Period size: 112 Copynumber: 2.2 Consensus size: 111
45271959 GGAAGTATAT
* * * *
45271969 GTGGCATCGATATGTGATTCTGATATATGTGTCCGATTAAGTCCACGTTTCATACATTGGCTTCG
1 GTGGCATCGATATGTGATTCCGATATATGTGTCCGAGTAAGTCCACATTTCATACATTGGCATCG
* * * *
45272034 ATATGTGATTTCGATATATGTGTACGAGTAAGTCCATGTTTCATAC
66 ATATGTGATTCCGATATATGTGTACGAGTAAGACCATCTTTCAGAC
* * * *
45272080 GTTTGCATCGATATGAGATTCCGATATATGTGTGCGAGTAAGTCCACATTTCATACGTTGGCATC
1 G-TGGCATCGATATGTGATTCCGATATATGTGTCCGAGTAAGTCCACATTTCATACATTGGCATC
** * **
45272145 GATATGTGATTCCGATATATGTGTGTGAGTAAGACCCTCTTTGGGAC
65 GATATGTGATTCCGATATATGTGTACGAGTAAGACCATCTTTCAGAC
45272192 AGTGGCATCGATATGTGATT
1 -GTGGCATCGATATGTGATT
45272212 ACATGTAAGA
Statistics
Matches: 111, Mismatches: 19, Indels: 3
0.83 0.14 0.02
Matches are distributed among these distances:
111 1 0.01
112 109 0.98
113 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.36
Consensus pattern (111 bp):
GTGGCATCGATATGTGATTCCGATATATGTGTCCGAGTAAGTCCACATTTCATACATTGGCATCG
ATATGTGATTCCGATATATGTGTACGAGTAAGACCATCTTTCAGAC
Found at i:45274726 original size:5 final size:5
Alignment explanation
Indices: 45274716--45274740 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
45274706 CAAGCTATAC
45274716 GAAAA GAAAA GAAAA GAAAA GAAAA
1 GAAAA GAAAA GAAAA GAAAA GAAAA
45274741 ACTGATTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (5 bp):
GAAAA
Done.