Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 142 of 316
Found at i:45278380 original size:29 final size:29
Alignment explanation
Indices: 45278313--45278370 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
45278303 AAAGTAAATT
45278313 ACAAATTGATATTGAAAATGAAAATAATC
1 ACAAATTGATATTGAAAATGAAAATAATC
45278342 ACAAATTGATATTGAAAATGAAAATAATC
1 ACAAATTGATATTGAAAATGAAAATAATC
45278371 TATGTTTGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.55, C:0.07, G:0.10, T:0.28
Consensus pattern (29 bp):
ACAAATTGATATTGAAAATGAAAATAATC
Found at i:45278727 original size:56 final size:56
Alignment explanation
Indices: 45278641--45278905 Score: 395
Period size: 56 Copynumber: 4.7 Consensus size: 56
45278631 GAAGTATATG
* *
45278641 TGGCATTGATATGTGATTCCGATATATGTGTGCGAGTAAGTACACGTTTCATACGT
1 TGGCATCGATATGTGATTCCGATATATGTGTGCGAGTAAGTCCACGTTTCATACGT
45278697 TGGCATCGATATGTGATTCCGATATATGTGTGCGAGTAAGTCCACGTTTCATACGT
1 TGGCATCGATATGTGATTCCGATATATGTGTGCGAGTAAGTCCACGTTTCATACGT
* *
45278753 TGGCATCGAAATGTGATTCCGATATATGTGTGCGAGTAAGTCGACGTTTCATACGT
1 TGGCATCGATATGTGATTCCGATATATGTGTGCGAGTAAGTCCACGTTTCATACGT
* * ** * *
45278809 TAGCATCGATATATGATTCTAATATATGTGTACAAGTAAGTCCACGTTTCATACGT
1 TGGCATCGATATGTGATTCCGATATATGTGTGCGAGTAAGTCCACGTTTCATACGT
* ** *
45278865 TGGCTTCGATATGTGATTTTTGATATATGTGTGTGAGTAAG
1 TGGCATCGATATGTGA-TTCCGATATATGTGTGCGAGTAAG
45278906 ACCCTGTCTG
Statistics
Matches: 188, Mismatches: 20, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
56 169 0.90
57 19 0.10
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.36
Consensus pattern (56 bp):
TGGCATCGATATGTGATTCCGATATATGTGTGCGAGTAAGTCCACGTTTCATACGT
Found at i:45279303 original size:56 final size:56
Alignment explanation
Indices: 45279217--45279336 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
45279207 ACAAGGGATG
45279217 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
45279273 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
45279329 ATGGGCAA
1 ATGGGCAA
45279337 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:45280547 original size:40 final size:39
Alignment explanation
Indices: 45280463--45280647 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 39
45280453 TTAAATGATG
* * * *
45280463 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* *
45280503 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
45280543 TCCGGGCTAAGCCCGAAGGCGTTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
45280582 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
45280623 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
45280648 AATGAGTAGC
Statistics
Matches: 124, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:45280599 original size:79 final size:80
Alignment explanation
Indices: 45280463--45280642 Score: 224
Period size: 79 Copynumber: 2.3 Consensus size: 80
45280453 TTAAATGATG
* *
45280463 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
45280528 GTGCGAGTTACTA-A
66 GTGCGAGTTACTATA
* * * **
45280542 TTCCGGGCTAAG-CCCGAAGGCGTTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
45280604 TTTGTGCGAGTTACTATA
63 TTTGTGCGAGTTACTATA
* *
45280622 ACCGGGCTATGTCCCGAAGGC
1 TCCGGGCTAAGTCCCGAAGGC
45280643 ATTTGAATGA
Statistics
Matches: 87, Mismatches: 9, Indels: 8
0.84 0.09 0.08
Matches are distributed among these distances:
78 1 0.01
79 59 0.68
80 27 0.31
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATA
Found at i:45287210 original size:56 final size:56
Alignment explanation
Indices: 45287124--45287243 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
45287114 ACAAGGGATG
45287124 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
45287180 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
45287236 ATGGGCAA
1 ATGGGCAA
45287244 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:45288462 original size:40 final size:39
Alignment explanation
Indices: 45288378--45288562 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 39
45288368 TCGAATGATG
* * * *
45288378 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* *
45288418 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
45288458 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
45288497 TCCGGGTTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTC-CGAAGGCATTTGTGCGAGTTACTA-AA
*
45288538 -CCGGGCTATGTCCTGAAGGCATTTG
1 TCCGGGCTAAGTCC-GAAGGCATTTG
45288563 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 37 0.30
40 78 0.62
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:45288515 original size:79 final size:81
Alignment explanation
Indices: 45288378--45288560 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
45288368 TCGAATGATG
* *
45288378 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
45288442 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
45288457 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCTCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATC-CGAAGGCA
45288519 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* * *
45288537 ACCGGGCTATGTCCTGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
45288561 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 2 0.02
79 58 0.65
80 29 0.33
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:45288584 original size:79 final size:78
Alignment explanation
Indices: 45288415--45288595 Score: 199
Period size: 79 Copynumber: 2.3 Consensus size: 78
45288405 CTAAGTGACC
* *
45288415 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATATCCGG-TTAAGATCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCAT
**
45288480 TGGTGCGAGTTACT
65 TGGAACGAGTTACT
* * *
45288494 AAATCCGGGTTAAG-TCTCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCTGAAGG
1 ATATCC-GGTTAAGATC-CGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGG
*
45288557 CATTTGAACGAG-TAGCT
62 CATTGGAACGAGTTA-CT
45288574 ATATCCGGTTAA-ATTCCGAAGG
1 ATATCCGGTTAAGA-TCCGAAGG
45288596 TACGTGATTT
Statistics
Matches: 86, Mismatches: 9, Indels: 14
0.79 0.08 0.13
Matches are distributed among these distances:
78 4 0.05
79 55 0.64
80 27 0.31
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (78 bp):
ATATCCGGTTAAGATCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATT
GGAACGAGTTACT
Found at i:45292034 original size:40 final size:40
Alignment explanation
Indices: 45291969--45292146 Score: 279
Period size: 40 Copynumber: 4.5 Consensus size: 40
45291959 AACCCAAGTA
* *
45291969 CCTTCGGGATTTAG-CCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
45292008 CCTTTGGGACCTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
45292048 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
45292088 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
45292128 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
45292147 TTATCATCCG
Statistics
Matches: 129, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 12 0.09
40 117 0.91
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:45298223 original size:39 final size:39
Alignment explanation
Indices: 45298134--45298388 Score: 388
Period size: 39 Copynumber: 6.5 Consensus size: 39
45298124 ACAAAGCATG
* * *
45298134 CGGGACTTTAAGCCCGGATGTAATACCAGCAC-AAAGCCTT
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
*
45298174 CAGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
45298213 CGGGACTTAGCCCGGGTATAACACCAGCACGAACGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
45298252 TGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
45298291 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
45298330 CGGGACTTAGCCCTGATATAA-ATCCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACA-CCAGCACGAATGCCTT
*
45298369 CGGGAATTAGCCCGGATATA
1 CGGGACTTAGCCCGGATATA
45298389 TATCTCACAC
Statistics
Matches: 199, Mismatches: 14, Indels: 5
0.91 0.06 0.02
Matches are distributed among these distances:
38 21 0.11
39 173 0.87
40 5 0.03
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.19
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:45302341 original size:48 final size:48
Alignment explanation
Indices: 45302282--45302395 Score: 138
Period size: 48 Copynumber: 2.4 Consensus size: 48
45302272 TATCTTAGAT
* * *
45302282 ATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATATCCCAGAC
1 ATGGTCTTACACTGGCTCACATCTCAAGACCGATGCCATATCCCAGAC
* * * * * *
45302330 ATGGTCTTACACTAGCTCTCGTCTCAATACCGATGCCATGTCCTAGAC
1 ATGGTCTTACACTGGCTCACATCTCAAGACCGATGCCATATCCCAGAC
*
45302378 ATGGTCTTCCACTGGCTC
1 ATGGTCTTACACTGGCTC
45302396 TCATTGTAAC
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 55 1.00
ACGTcount: A:0.21, C:0.32, G:0.20, T:0.27
Consensus pattern (48 bp):
ATGGTCTTACACTGGCTCACATCTCAAGACCGATGCCATATCCCAGAC
Found at i:45303247 original size:27 final size:27
Alignment explanation
Indices: 45303223--45303429 Score: 261
Period size: 27 Copynumber: 7.6 Consensus size: 27
45303213 TTAGTTTACC
* *
45303223 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTATA
*
45303250 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTATA
* * *
45303277 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTATA
45303304 AAATTACCAAAATACCCCTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTATA
* *
45303331 AAATTACTAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTATA
* * *
45303358 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTATA
** * *
45303385 AAATTTACCAAAATACCCCTAATTTGTG
1 AAA-TTACCAAAATACCCCTGGTTTATA
*
45303413 AAATTACTAAAATACCC
1 AAATTACCAAAATACCC
45303430 TCGACCTGTA
Statistics
Matches: 160, Mismatches: 19, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
27 136 0.85
28 24 0.15
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTATA
Found at i:45303351 original size:81 final size:81
Alignment explanation
Indices: 45303214--45303429 Score: 299
Period size: 81 Copynumber: 2.7 Consensus size: 81
45303204 TAGAATACTT
** * * *
45303214 TAGTTTACCAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAA
1 TAGTTTATAAAATTACCAAAATACCCCTGGTTTATAAAATTACTAAAATACCCCTGGTTTGTAAA
*
45303279 ATTA-CTAAAATACCCT
66 ATTATC-AAAATACCCC
*
45303295 TTGTTTATAAAATTACCAAAATACCCCTGGTTTATAAAATTACTAAAATACCCCTGGTTTGTAAA
1 TAGTTTATAAAATTACCAAAATACCCCTGGTTTATAAAATTACTAAAATACCCCTGGTTTGTAAA
45303360 ATTATCAAAATACCCC
66 ATTATCAAAATACCCC
* ** * *
45303376 TAGTTTGTAAAATTTACCAAAATACCCCTAATTTGTGAAATTACTAAAATACCC
1 TAGTTTATAAAA-TTACCAAAATACCCCTGGTTTATAAAATTACTAAAATACCC
45303430 TCGACCTGTA
Statistics
Matches: 120, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
81 82 0.68
82 38 0.32
ACGTcount: A:0.40, C:0.20, G:0.07, T:0.32
Consensus pattern (81 bp):
TAGTTTATAAAATTACCAAAATACCCCTGGTTTATAAAATTACTAAAATACCCCTGGTTTGTAAA
ATTATCAAAATACCCC
Found at i:45303443 original size:27 final size:27
Alignment explanation
Indices: 45303413--45303473 Score: 95
Period size: 27 Copynumber: 2.3 Consensus size: 27
45303403 CTAATTTGTG
45303413 AAATTACTAAAATACCCTCGACCTGTA
1 AAATTACTAAAATACCCTCGACCTGTA
* * *
45303440 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACTAAAATACCCTCGACCTGTA
45303467 AAATTAC
1 AAATTAC
45303474 CAAAGTATCC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
AAATTACTAAAATACCCTCGACCTGTA
Found at i:45303443 original size:82 final size:81
Alignment explanation
Indices: 45303223--45303498 Score: 261
Period size: 81 Copynumber: 3.4 Consensus size: 81
45303213 TTAGTTTACC
* ** * * ***
45303223 AAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTA-CTAA
1 AAATTACCAAAATACCCCTAATTTATAAAATTACTAAAATACCCCTGACCTGTAAAATTATC-AA
* * *
45303287 AATACCCTTTGTTTATA
65 AATACCCCTAGTTTGTA
** ***
45303304 AAATTACCAAAATACCCCTGGTTTATAAAATTACTAAAATACCCCTGGTTTGTAAAATTATCAAA
1 AAATTACCAAAATACCCCTAATTTATAAAATTACTAAAATACCCCTGACCTGTAAAATTATCAAA
45303369 ATACCCCTAGTTTGTA
66 ATACCCCTAGTTTGTA
* * **
45303385 AAATTTACCAAAATACCCCTAATTTGTGAAATTACTAAAATA-CCCTCGACCTGTAAAATTATTG
1 AAA-TTACCAAAATACCCCTAATTTATAAAATTACTAAAATACCCCT-GACCTGTAAAATTATCA
* *
45303449 AAATA-CCCTCGACTTGTA
64 AAATACCCCTAG-TTTGTA
* * * *
45303467 AAATTACCAAAGTATCCCTGATTTACAAAATT
1 AAATTACCAAAATACCCCTAATTTATAAAATT
45303499 GTTGTTTTAC
Statistics
Matches: 168, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
81 108 0.64
82 60 0.36
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTAATTTATAAAATTACTAAAATACCCCTGACCTGTAAAATTATCAAA
ATACCCCTAGTTTGTA
Found at i:45303516 original size:27 final size:27
Alignment explanation
Indices: 45303482--45303715 Score: 317
Period size: 27 Copynumber: 8.7 Consensus size: 27
45303472 ACCAAAGTAT
*
45303482 CCCT-GATTTACAAAATTGTTGTTTTA
1 CCCTCGATTTACAAAATTATTGTTTTA
**
45303508 CCCTCGATTTACAAAATTATCATTTTA
1 CCCTCGATTTACAAAATTATTGTTTTA
* *
45303535 CCCTCGATTTACAAAATTACTATTTTA
1 CCCTCGATTTACAAAATTATTGTTTTA
* *
45303562 CCCTCGATTTATAAAATTATCGTTTTA
1 CCCTCGATTTACAAAATTATTGTTTTA
*
45303589 CCCTCGATTGACAAAATTATTGTTTTA
1 CCCTCGATTTACAAAATTATTGTTTTA
* *
45303616 CCCTCAATTTACAAAATTAATGTTTTA
1 CCCTCGATTTACAAAATTATTGTTTTA
* *
45303643 CCCTCAATTTACAAAATTACTGTTTTA
1 CCCTCGATTTACAAAATTATTGTTTTA
* **
45303670 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAAAATTATTGTTTTA
*
45303697 CCCTCGATTTATAAAATTA
1 CCCTCGATTTACAAAATTA
45303716 CCATTTTACC
Statistics
Matches: 186, Mismatches: 21, Indels: 1
0.89 0.10 0.00
Matches are distributed among these distances:
26 4 0.02
27 182 0.98
ACGTcount: A:0.32, C:0.21, G:0.07, T:0.41
Consensus pattern (27 bp):
CCCTCGATTTACAAAATTATTGTTTTA
Found at i:45303526 original size:81 final size:82
Alignment explanation
Indices: 45303439--45303688 Score: 204
Period size: 81 Copynumber: 3.1 Consensus size: 82
45303429 CTCGACCTGT
** * *
45303439 AAAATTATTGA-AATACCCTCGACTTGTAAAATTACCAAAGTATCCCT-GATTTACAAAATTGTT
1 AAAATTATTGATAATACCCTCGACTTACAAAATTACCAAAGTA-CCCTCGATTTACAAAATTATC
*
45303502 GTTTTACCCTCGATTTAC
65 GTTTTACCCTCGATTGAC
* ** * * *** *
45303520 AAAATTA-TCATTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTATAAAATTATCG
1 AAAATTATTGATAATACCCTCGACTTACAAAATTACCAAAGTACCCTCGATTTACAAAATTATCG
45303584 TTTTACCCTCGATTGAC
66 TTTTACCCTCGATTGAC
** * * ****** *
45303601 AAAATTATTG-TTTTACCCTCAATTTACAAAATTAATGTTTTACCCTCAATTTACAAAATTA-CT
1 AAAATTATTGATAATACCCTCGACTTACAAAATTACCAAAGTACCCTCGATTTACAAAATTATC-
*
45303664 GTTTTACCCTCGATTTAC
65 GTTTTACCCTCGATTGAC
*
45303682 AGAATTA
1 AAAATTA
45303689 CCGTTTTACC
Statistics
Matches: 143, Mismatches: 22, Indels: 8
0.83 0.13 0.05
Matches are distributed among these distances:
80 7 0.05
81 135 0.94
82 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.07, T:0.39
Consensus pattern (82 bp):
AAAATTATTGATAATACCCTCGACTTACAAAATTACCAAAGTACCCTCGATTTACAAAATTATCG
TTTTACCCTCGATTGAC
Found at i:45303748 original size:81 final size:81
Alignment explanation
Indices: 45303494--45303754 Score: 270
Period size: 81 Copynumber: 3.2 Consensus size: 81
45303484 CTGATTTACA
* *
45303494 AAATTGTTGTTTTACCCTCGATTTACAAAATTATCATTTTACCCTCGATTTACAAAATTACTATT
1 AAATTATTGTTTTACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTTACAAAATTACTATT
** ** *
45303559 TTACCCTCGATTTATA
66 TTACCCTTAAGATATT
* * * * * *
45303575 AAATTATCGTTTTACCCTCGATTGACAAAATTATTGTTTTACCCTCAATTTACAAAATTAATGTT
1 AAATTATTGTTTTACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTTACAAAATTACTATT
* ** **
45303640 TTACCCTCAATTTACA
66 TTACCCTTAAGATATT
* * * * *
45303656 AAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAAAATTACCATT
1 AAATTATTGTTTTACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTTACAAAATTACTATT
* * *
45303721 TTACCCTTAGGGTGTT
66 TTACCCTTAAGATATT
* *
45303737 AAATGATTGTTTTGCCCT
1 AAATTATTGTTTTACCCT
45303755 TGTGGGCAAG
Statistics
Matches: 149, Mismatches: 31, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
81 149 1.00
ACGTcount: A:0.30, C:0.20, G:0.08, T:0.42
Consensus pattern (81 bp):
AAATTATTGTTTTACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTTACAAAATTACTATT
TTACCCTTAAGATATT
Found at i:45304079 original size:33 final size:32
Alignment explanation
Indices: 45304030--45304093 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
45304020 CTCGCTGCAA
* *
45304030 TCTGGTGGCTTCGCCACATATATATATATCTGT
1 TCTGGTGGCCTAGCCACA-ATATATATATCTGT
* *
45304063 TCTGGTGGCCTAGCCACAATATCTGTATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
45304094 GTGACTTCAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:45304266 original size:25 final size:26
Alignment explanation
Indices: 45304236--45304305 Score: 92
Period size: 25 Copynumber: 2.8 Consensus size: 26
45304226 CATTCACATT
* *
45304236 CTGATTTTGATTCTGTTTCTTGAT-AC
1 CTGATTCTGATTCTGATTCTTG-TCAC
45304262 C-GATTCTGATTCTGATTC-TGTCAC
1 CTGATTCTGATTCTGATTCTTGTCAC
45304286 CTGATTCTGATTCTGATTCT
1 CTGATTCTGATTCTGATTCT
45304306 CATTTTGATT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
23 1 0.03
24 5 0.13
25 32 0.82
26 1 0.03
ACGTcount: A:0.16, C:0.20, G:0.16, T:0.49
Consensus pattern (26 bp):
CTGATTCTGATTCTGATTCTTGTCAC
Found at i:45304272 original size:6 final size:6
Alignment explanation
Indices: 45304233--45304326 Score: 75
Period size: 6 Copynumber: 15.3 Consensus size: 6
45304223 TTGCATTCAC
* * * *
45304233 ATTCTG ATTTTG ATTCTG TTTCTTG ATACCG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
45304282 -TCACCTG ATTCTG ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
45304327 AATGTTTCTT
Statistics
Matches: 68, Mismatches: 14, Indels: 12
0.72 0.15 0.13
Matches are distributed among these distances:
5 2 0.03
6 57 0.84
7 8 0.12
8 1 0.01
ACGTcount: A:0.17, C:0.18, G:0.15, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:45304298 original size:31 final size:31
Alignment explanation
Indices: 45304233--45304305 Score: 92
Period size: 31 Copynumber: 2.4 Consensus size: 31
45304223 TTGCATTCAC
* ** *
45304233 ATTCTGATTTTGATTCTGTTTCTTGATACCG
1 ATTCTGATTCTGATTCTGTCACCTGATACCG
* *
45304264 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATACCG
45304295 ATTCTGATTCT
1 ATTCTGATTCT
45304306 CATTTTGATT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.16, C:0.19, G:0.15, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATACCG
Found at i:45308965 original size:19 final size:19
Alignment explanation
Indices: 45308937--45308975 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
45308927 AGAGCAAAAG
45308937 AAACGAG-AAACGGGCCAA
1 AAACGAGAAAACGGGCCAA
*
45308955 AAACGGAGAAAATGGGCCAA
1 AAAC-GAGAAAACGGGCCAA
45308975 A
1 A
45308976 GTACGAAACC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 3 0.17
20 11 0.61
ACGTcount: A:0.51, C:0.18, G:0.28, T:0.03
Consensus pattern (19 bp):
AAACGAGAAAACGGGCCAA
Found at i:45312506 original size:46 final size:46
Alignment explanation
Indices: 45312448--45312589 Score: 203
Period size: 46 Copynumber: 3.1 Consensus size: 46
45312438 CACAATATAT
* * * *
45312448 ATATACATCTCATACATATCTCACATTAGCCATTTGGCTTTACCAC
1 ATATCCATCTCATACACATTTCACATTAGCCATTCGGCTTTACCAC
* *
45312494 ATATCCATCTCATACACGTTTCACATTAGCCATTCGGCTTTACCTC
1 ATATCCATCTCATACACATTTCACATTAGCCATTCGGCTTTACCAC
* * *
45312540 ATATCTATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCAC
1 ATATCCATCTCATACACATTTCACATTAGCCATTCGGCTTTACCAC
45312586 ATAT
1 ATAT
45312590 ATACATGTTC
Statistics
Matches: 85, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 85 1.00
ACGTcount: A:0.27, C:0.30, G:0.08, T:0.35
Consensus pattern (46 bp):
ATATCCATCTCATACACATTTCACATTAGCCATTCGGCTTTACCAC
Found at i:45312624 original size:47 final size:47
Alignment explanation
Indices: 45312563--45312847 Score: 435
Period size: 47 Copynumber: 6.1 Consensus size: 47
45312553 ACACATTTCG
* * **
45312563 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATACGCATGTTCACATTCATCA
* *
45312610 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATACGCATGTTCACATTCATCA
*
45312657 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATACGCATGTTCACATTCATCA
* *
45312704 CATTGGCCATTCGGCCTTATCACAAATACGCATGTTCACATTTATCA
1 CATTGGCCATTCGGCCTTATCACATATACGCATGTTCACATTCATCA
*
45312751 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATACGCATGTTCACATTCATCA
* ** **
45312798 CATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATACGCATGTTCACATTCATCA
45312845 CAT
1 CAT
45312848 AAAATCCTAA
Statistics
Matches: 221, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 221 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATACGCATGTTCACATTCATCA
Found at i:45318848 original size:48 final size:48
Alignment explanation
Indices: 45318795--45319446 Score: 1106
Period size: 48 Copynumber: 13.6 Consensus size: 48
45318785 TATATATACG
* * *
45318795 TGTGGTGAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
* *
45318843 TGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
* *
45318891 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
45318939 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
* *
45318987 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
* * *
45319035 TGTGGTAAAGCCGAATGGCGAATGTAAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
* *
45319083 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
* * *
45319131 TGTGGTGAAGCCGAATGGCGAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
*
45319179 TGTGGTAAAGCCGAATGGCTAATGTGAAATATACATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
* *
45319227 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
45319275 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
45319323 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
* *
45319371 TGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
45319419 TGTGGTAAAGCCGAATGGCTAATGTGAA
1 TGTGGTAAAGCCGAATGGCTAATGTGAA
45319447 TGTTGTAACA
Statistics
Matches: 564, Mismatches: 40, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 564 1.00
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
Found at i:45319636 original size:37 final size:37
Alignment explanation
Indices: 45319494--45319635 Score: 221
Period size: 37 Copynumber: 3.8 Consensus size: 37
45319484 AATATATTCT
*
45319494 GGGTGAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
* * *
45319531 GGGTAAGACCCGATGACTACGTGTGCAGAGTACGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
*
45319568 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
* *
45319605 GGGTAAGACCCGATAACTTCGTGTGGAGATT
1 GGGTAAGACCCGATGACTACGTGTGGAGATT
45319636 TCGTCTGAGC
Statistics
Matches: 95, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 95 1.00
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
Found at i:45320671 original size:40 final size:40
Alignment explanation
Indices: 45320621--45320911 Score: 467
Period size: 40 Copynumber: 7.3 Consensus size: 40
45320611 CGAGGTTTAA
*
45320621 CCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
* *
45320661 CCCAGTTATATCACTAGCACGAATGCTCTTCGGAACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
45320701 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
*
45320741 CCCGGAT-TCATCAATAGCACGAATGCTCTTCGGAACTTAG
1 CCCGGATAT-ATCACTAGCACGAATGCTCTTCGGAACTTAG
45320781 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
*
45320821 CCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
* * * * *
45320861 CCTGGATATAACACCAGCATGAATGCTCTTCGGGACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
*
45320901 CTCGGATATAT
1 CCCGGATATAT
45320912 AACTCTCAAT
Statistics
Matches: 234, Mismatches: 15, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
39 1 0.00
40 232 0.99
41 1 0.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
Found at i:45322452 original size:46 final size:46
Alignment explanation
Indices: 45322399--45322535 Score: 193
Period size: 46 Copynumber: 3.0 Consensus size: 46
45322389 TATATATACA
* * * *
45322399 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
45322445 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * *
45322491 TATCTCATACACATTTCGCATTAGCTATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
45322536 ATACATGTTC
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:45322573 original size:47 final size:47
Alignment explanation
Indices: 45322517--45322799 Score: 323
Period size: 47 Copynumber: 5.9 Consensus size: 47
45322507 CGCATTAGCT
45322517 ATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCC
1 ATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCC
* * * *
45322564 ATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATAGGCC
1 ATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCC
* * ** *
45322611 ATTCGGCCTTATCACACATACGCATGCTCACATTCATCACATTGGCC
1 ATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCC
* * * **
45322658 ATTCGACCTCATCACACACATACGCATGTTCACATTCATCACATTGGCC
1 ATTCGGCCTTA-C-CACATATATACATGTTCACATTCATCACATTGGCC
* * *
45322707 ATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCACATTTGCC
1 ATTCGGCC-T-T-AC-CACATATATACATGTTCACATTCATCACATTGGCC
* * **
45322758 ATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 ATTCGGCCTTACCACATATATACATGTTCACATTCATCACAT
45322800 AAAATCCTAA
Statistics
Matches: 204, Mismatches: 27, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
47 120 0.59
48 1 0.00
49 42 0.21
50 2 0.01
51 38 0.19
52 1 0.00
ACGTcount: A:0.28, C:0.30, G:0.11, T:0.31
Consensus pattern (47 bp):
ATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCC
Found at i:45328054 original size:103 final size:103
Alignment explanation
Indices: 45327875--45328081 Score: 378
Period size: 103 Copynumber: 2.0 Consensus size: 103
45327865 ATGTGAAGCC
*
45327875 TATTTGGCATACATTAGCGACACGGAGGTTAAGAGCCCTACTATTGAGGAGTTGAGAACAGTTAG
1 TATTTGGCATACATTAGCGACACGGAGGTTAAGAGCCCTACTATTGAAGAGTTGAGAACAGTTAG
*
45327940 GGAATTCCTTGATGTTTTCCCCAAGGAGCTGTTAGGGT
66 GGAATTCCTTGATGTTTTCCCCAAGGAGCTGTCAGGGT
*
45327978 TATTTGGCATACATTAGCGACACGGAGGTTAAGAGCCCTACTATTGAAGAGTTGAGAATAGTTAG
1 TATTTGGCATACATTAGCGACACGGAGGTTAAGAGCCCTACTATTGAAGAGTTGAGAACAGTTAG
*
45328043 GGAATTCCTTGATGTTTTCCCTAAGGAGCTGTCAGGGT
66 GGAATTCCTTGATGTTTTCCCCAAGGAGCTGTCAGGGT
45328081 T
1 T
45328082 TCCGCCCAAT
Statistics
Matches: 100, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
103 100 1.00
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.30
Consensus pattern (103 bp):
TATTTGGCATACATTAGCGACACGGAGGTTAAGAGCCCTACTATTGAAGAGTTGAGAACAGTTAG
GGAATTCCTTGATGTTTTCCCCAAGGAGCTGTCAGGGT
Found at i:45328439 original size:17 final size:17
Alignment explanation
Indices: 45328417--45328452 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
45328407 GTGTTTGGGG
45328417 TATCACTAATGGAGGGT
1 TATCACTAATGGAGGGT
45328434 TATCACTAATGGAGGGT
1 TATCACTAATGGAGGGT
45328451 TA
1 TA
45328453 AGGAGGCGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.31, C:0.11, G:0.28, T:0.31
Consensus pattern (17 bp):
TATCACTAATGGAGGGT
Found at i:45332272 original size:16 final size:16
Alignment explanation
Indices: 45332251--45332282 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
45332241 GTTGTAACGC
45332251 CCCAAAAATCCCGAAA
1 CCCAAAAATCCCGAAA
*
45332267 CCCAAAAATCTCGAAA
1 CCCAAAAATCCCGAAA
45332283 TCTCAAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.34, G:0.06, T:0.09
Consensus pattern (16 bp):
CCCAAAAATCCCGAAA
Found at i:45333955 original size:20 final size:20
Alignment explanation
Indices: 45333930--45333968 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
45333920 TTAAAAAGGT
* *
45333930 AAATAAAGATAAAAGTAAAC
1 AAATAAAAATAAAAATAAAC
45333950 AAATAAAAATAAAAATAAA
1 AAATAAAAATAAAAATAAA
45333969 GTAAAGCCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.77, C:0.03, G:0.05, T:0.15
Consensus pattern (20 bp):
AAATAAAAATAAAAATAAAC
Found at i:45342310 original size:150 final size:150
Alignment explanation
Indices: 45342091--45342392 Score: 568
Period size: 150 Copynumber: 2.0 Consensus size: 150
45342081 GTATAGTTTA
*
45342091 TAGCAAGACCAGAATGTCAAACCCACAAGAACTAAAAGTACTAGTATTAACTTTCTTTTTATTAT
1 TAGCAAGACCAGAATGTCAAACCCACAAGAACTAAAAGTACTACTATTAACTTTCTTTTTATTAT
45342156 CTAGCCTAAAAATAAGGGGATTTACTTTATCTAAACTAATTAACTAAACTAAGAATGCACAAGAA
66 CTAGCCTAAAAATAAGGGGATTTACTTTATCTAAACTAATTAACTAAACTAAGAATGCACAAGAA
*
45342221 GAAAATTGGGGAATTACTCT
131 GAAAATTAGGGAATTACTCT
* *
45342241 TAGCAAGACCAGAATGTCGAACCCACAGGAACTAAAAGTACTACTATTAACTTTCTTTTTATTAT
1 TAGCAAGACCAGAATGTCAAACCCACAAGAACTAAAAGTACTACTATTAACTTTCTTTTTATTAT
45342306 CTAGCCTAAAAATAAGGGGATTTACTTTATCTAAACTAATTAACTAAACTAAGAATGCACAAGAA
66 CTAGCCTAAAAATAAGGGGATTTACTTTATCTAAACTAATTAACTAAACTAAGAATGCACAAGAA
45342371 GAAAATTAGGGAATTACTCT
131 GAAAATTAGGGAATTACTCT
45342391 TA
1 TA
45342393 CGAAAACTGA
Statistics
Matches: 148, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
150 148 1.00
ACGTcount: A:0.42, C:0.16, G:0.13, T:0.29
Consensus pattern (150 bp):
TAGCAAGACCAGAATGTCAAACCCACAAGAACTAAAAGTACTACTATTAACTTTCTTTTTATTAT
CTAGCCTAAAAATAAGGGGATTTACTTTATCTAAACTAATTAACTAAACTAAGAATGCACAAGAA
GAAAATTAGGGAATTACTCT
Found at i:45343867 original size:57 final size:58
Alignment explanation
Indices: 45343740--45343883 Score: 159
Period size: 57 Copynumber: 2.5 Consensus size: 58
45343730 CTTATTTATG
* * * *
45343740 AAAGGATTTAGCCCAGACGGGTAATCCTGATATAAATCCTCTTGAGCATATGTTATAA
1 AAAGGATTTAGCCCAAACGGGTAATCCAGATATAAATCCTCTTGAGCATATATCATAA
** * *
45343798 ATTGGATTTAGCCCAAACGGGTAATCCAG--ATCAA-GCTCTTTAGAGCATATATCATAA
1 AAAGGATTTAGCCCAAACGGGTAATCCAGATATAAATCCTC-TT-GAGCATATATCATAA
* *
45343855 AAAGGATTTAGCCTAAACTGGTAATCCAG
1 AAAGGATTTAGCCCAAACGGGTAATCCAG
45343884 TCATATACAT
Statistics
Matches: 72, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
55 3 0.04
56 6 0.08
57 38 0.53
58 25 0.35
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (58 bp):
AAAGGATTTAGCCCAAACGGGTAATCCAGATATAAATCCTCTTGAGCATATATCATAA
Found at i:45345229 original size:42 final size:42
Alignment explanation
Indices: 45345159--45345268 Score: 157
Period size: 42 Copynumber: 2.6 Consensus size: 42
45345149 ACGGGCAGAG
* * *
45345159 ACACAGGCATGTGTCTCAGCCGTGTGTGCTACATGGCCTAGA
1 ACACAGGCGTCTGTCTCAGCCGTGTGTGCTACACGGCCTAGA
*
45345201 ACACGGGCGTCTGTCTCAGCCGTGTGTGCTACACGGCCTAGA
1 ACACAGGCGTCTGTCTCAGCCGTGTGTGCTACACGGCCTAGA
* * *
45345243 ACACAGGCGTGTGTCTTAGCCATGTG
1 ACACAGGCGTCTGTCTCAGCCGTGTG
45345269 AAACCTGCAC
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 60 1.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (42 bp):
ACACAGGCGTCTGTCTCAGCCGTGTGTGCTACACGGCCTAGA
Found at i:45352492 original size:52 final size:52
Alignment explanation
Indices: 45352436--45352580 Score: 119
Period size: 52 Copynumber: 2.8 Consensus size: 52
45352426 GAATTTCTTT
* * * * *
45352436 TCACGGCATGACTCTTTGTCTTAAGCTTGTCGTAACCTCAAGGTTTTTCTCA
1 TCACGACATGACTCTCTGTCTTAAGCTCGTCGCAACCTCAAGGTATTTCTCA
** * * * **
45352488 TCACGATGTGACTCTCTGTCTTGAGCTCGTTGCGACCTCAAGGTATTTCTTG
1 TCACGACATGACTCTCTGTCTTAAGCTCGTCGCAACCTCAAGGTATTTCTCA
* ** * * * *
45352540 TCACAATGTGACTCTCTATCTTGAGCTCGCCACAACCTCAA
1 TCACGACATGACTCTCTGTCTTAAGCTCGTCGCAACCTCAA
45352581 CAACTCGACG
Statistics
Matches: 75, Mismatches: 18, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
52 75 1.00
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (52 bp):
TCACGACATGACTCTCTGTCTTAAGCTCGTCGCAACCTCAAGGTATTTCTCA
Found at i:45359864 original size:29 final size:29
Alignment explanation
Indices: 45359832--45359932 Score: 168
Period size: 29 Copynumber: 3.5 Consensus size: 29
45359822 TAAATTGCAT
*
45359832 AGCACTAAGTGTGCAAGTTTGATTATGTA
1 AGCACTAAGTGTGCGAGTTTGATTATGTA
45359861 AGCACTAAGTGTGCGAGTTTGATTATGTA
1 AGCACTAAGTGTGCGAGTTTGATTATGTA
* *
45359890 AGCACTAAGTGTGCGAGTTTTATTATATA
1 AGCACTAAGTGTGCGAGTTTGATTATGTA
45359919 A-CACTAAGTGTGCG
1 AGCACTAAGTGTGCG
45359933 GACTTACTAT
Statistics
Matches: 69, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
28 13 0.19
29 56 0.81
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.34
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGTTTGATTATGTA
Found at i:45359874 original size:58 final size:59
Alignment explanation
Indices: 45359804--45359934 Score: 171
Period size: 58 Copynumber: 2.3 Consensus size: 59
45359794 CATGAGATTG
*
45359804 GCACTAAGTGTGCGGA-TTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATGTAA
1 GCACTAAGTGTGCGGAGTTTAAATATGCA-AGCACTAAGTGTGCAAGTTTGATTATATAA
* * * * *
45359862 GCACTAAGTGTGC-GAGTTTGATTATGTAAGCACTAAGTGTGCGAGTTTTATTATATAA
1 GCACTAAGTGTGCGGAGTTTAAATATGCAAGCACTAAGTGTGCAAGTTTGATTATATAA
45359920 -CACTAAGTGTGCGGA
1 GCACTAAGTGTGCGGA
45359935 CTTACTATAT
Statistics
Matches: 64, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
57 14 0.22
58 47 0.73
59 3 0.05
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (59 bp):
GCACTAAGTGTGCGGAGTTTAAATATGCAAGCACTAAGTGTGCAAGTTTGATTATATAA
Found at i:45374696 original size:39 final size:39
Alignment explanation
Indices: 45374641--45374716 Score: 125
Period size: 39 Copynumber: 1.9 Consensus size: 39
45374631 ACTCAACACG
* *
45374641 GTAACCTCAGTTGTAGTGCTTTCAACCACAATACCCATA
1 GTAACCTCACTCGTAGTGCTTTCAACCACAATACCCATA
*
45374680 GTAACCTCACTCGTAGTGCTTTTAACCACAATACCCA
1 GTAACCTCACTCGTAGTGCTTTCAACCACAATACCCA
45374717 AAGTCTCAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.30, C:0.30, G:0.12, T:0.28
Consensus pattern (39 bp):
GTAACCTCACTCGTAGTGCTTTCAACCACAATACCCATA
Found at i:45376934 original size:23 final size:22
Alignment explanation
Indices: 45376904--45376946 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 22
45376894 TGCCGTGAGC
45376904 TAAGGAAAAGA-AAAAGAAAGGA
1 TAAGGAAAA-ACAAAAGAAAGGA
45376926 TAAGAGAAAAACAAAAGAAAG
1 TAAG-GAAAAACAAAAGAAAG
45376947 ACAAAATGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.70, C:0.02, G:0.23, T:0.05
Consensus pattern (22 bp):
TAAGGAAAAACAAAAGAAAGGA
Found at i:45378097 original size:29 final size:29
Alignment explanation
Indices: 45378050--45378178 Score: 154
Period size: 29 Copynumber: 4.5 Consensus size: 29
45378040 CATGAGATTG
* * *
45378050 GCACTAAGTGTGCGGGTTTAAAT-TGCATA
1 GCACTAAGTGTGCGAGTTTGAATATGTA-A
* *
45378079 GCACTAAGTGTGCAAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGAATATGTAA
*
45378108 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGAATATGTAA
* * *
45378137 GCACTAAGTGTGCGAGTTTTATTATATAA
1 GCACTAAGTGTGCGAGTTTGAATATGTAA
45378166 -CACTAAGTGTGCG
1 GCACTAAGTGTGCG
45378179 GACTTACTAT
Statistics
Matches: 91, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
28 13 0.14
29 75 0.82
30 3 0.03
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTTGAATATGTAA
Found at i:45378140 original size:58 final size:58
Alignment explanation
Indices: 45378050--45378178 Score: 172
Period size: 58 Copynumber: 2.2 Consensus size: 58
45378040 CATGAGATTG
* *
45378050 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATAA
* * * * *
45378108 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCGAGTTTTATTATATAA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATATAA
45378166 -CACTAAGTGTGCG
1 GCACTAAGTGTGCG
45378179 GACTTACTAT
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
57 13 0.21
58 47 0.75
59 3 0.05
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATAA
Found at i:45386151 original size:29 final size:29
Alignment explanation
Indices: 45386104--45386232 Score: 154
Period size: 29 Copynumber: 4.5 Consensus size: 29
45386094 CATGAGATTG
* * *
45386104 GCACTAAGTGTGCGGGTTTAAAT-TGCATA
1 GCACTAAGTGTGCGAGTTTGAATATGTA-A
* *
45386133 GCACTAAGTGTGCAAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGAATATGTAA
*
45386162 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGAATATGTAA
* * *
45386191 GCACTAAGTGTGCGAGTTTTATTATATAA
1 GCACTAAGTGTGCGAGTTTGAATATGTAA
45386220 -CACTAAGTGTGCG
1 GCACTAAGTGTGCG
45386233 GACTTACTAT
Statistics
Matches: 91, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
28 13 0.14
29 75 0.82
30 3 0.03
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTTGAATATGTAA
Found at i:45386194 original size:58 final size:58
Alignment explanation
Indices: 45386104--45386232 Score: 172
Period size: 58 Copynumber: 2.2 Consensus size: 58
45386094 CATGAGATTG
* *
45386104 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATAA
* * * * *
45386162 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCGAGTTTTATTATATAA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATATAA
45386220 -CACTAAGTGTGCG
1 GCACTAAGTGTGCG
45386233 GACTTACTAT
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
57 13 0.21
58 47 0.75
59 3 0.05
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATAA
Found at i:45392876 original size:23 final size:23
Alignment explanation
Indices: 45392822--45392881 Score: 77
Period size: 22 Copynumber: 2.6 Consensus size: 23
45392812 CGGACATGTG
45392822 ACTGTCACTTTGCACTGAAGTGCC
1 ACTGTCAC-TTGCACTGAAGTGCC
* * *
45392846 ACT-ACACTTGCATTGTAGTGCC
1 ACTGTCACTTGCACTGAAGTGCC
45392868 ACTGTCACTTGCAC
1 ACTGTCACTTGCAC
45392882 CATAATGCCA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
22 16 0.53
23 11 0.37
24 3 0.10
ACGTcount: A:0.22, C:0.30, G:0.18, T:0.30
Consensus pattern (23 bp):
ACTGTCACTTGCACTGAAGTGCC
Found at i:45394279 original size:17 final size:18
Alignment explanation
Indices: 45394251--45394288 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
45394241 TTGTTTTCAT
45394251 TTTTATAATTTT-TGAAAA
1 TTTTATAATTTTCT-AAAA
45394269 TTTTA-AATTTTCTAAAA
1 TTTTATAATTTTCTAAAA
45394286 TTT
1 TTT
45394289 AGTAGAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.58
Consensus pattern (18 bp):
TTTTATAATTTTCTAAAA
Found at i:45405604 original size:16 final size:16
Alignment explanation
Indices: 45405585--45405616 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
45405575 AATTGTGTTA
45405585 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
45405601 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
45405617 ACTCCGTTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:45412112 original size:15 final size:15
Alignment explanation
Indices: 45412092--45412127 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
45412082 GTACGGATAT
45412092 AATAAAATATTAAAA
1 AATAAAATATTAAAA
*
45412107 AAT-AAATATTTAAA
1 AATAAAATATTAAAA
45412121 AATAAAA
1 AATAAAA
45412128 AAGATATTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 13 0.68
15 6 0.32
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (15 bp):
AATAAAATATTAAAA
Found at i:45414252 original size:16 final size:16
Alignment explanation
Indices: 45414231--45414264 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
45414221 AATAAAAAAA
* *
45414231 TAGTTTTTATATTTTT
1 TAGTTTTAATAATTTT
45414247 TAGTTTTAATAATTTT
1 TAGTTTTAATAATTTT
45414263 TA
1 TA
45414265 ATTACTTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (16 bp):
TAGTTTTAATAATTTT
Found at i:45414539 original size:32 final size:33
Alignment explanation
Indices: 45414501--45414572 Score: 103
Period size: 33 Copynumber: 2.2 Consensus size: 33
45414491 TTAAAAGGTC
*
45414501 AAATAAATCCTTA-TACC-AAAATACAAATATCA
1 AAATAAAT-CTAATTACCAAAAATACAAATATCA
*
45414533 AAATAAATCTAATTACCAAAAATATAAATATCA
1 AAATAAATCTAATTACCAAAAATACAAATATCA
45414566 AAATAAA
1 AAATAAA
45414573 GAATAAGCTC
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
31 3 0.08
32 12 0.33
33 21 0.58
ACGTcount: A:0.61, C:0.14, G:0.00, T:0.25
Consensus pattern (33 bp):
AAATAAATCTAATTACCAAAAATACAAATATCA
Found at i:45416127 original size:11 final size:11
Alignment explanation
Indices: 45416108--45416139 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
45416098 TTTTCATAAT
*
45416108 TCATGCAATCA
1 TCATTCAATCA
45416119 TCATTCAATCA
1 TCATTCAATCA
45416130 TCATTCAATC
1 TCATTCAATC
45416140 GCAATCATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.34, C:0.28, G:0.03, T:0.34
Consensus pattern (11 bp):
TCATTCAATCA
Found at i:45417344 original size:30 final size:30
Alignment explanation
Indices: 45417310--45417372 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
45417300 TTTTCGAACC
* *
45417310 TAGGGATAAAATGGTTATTTTGCAAAAGTA
1 TAGGGACAAAATGGTCATTTTGCAAAAGTA
* **
45417340 TAGGGGCAAAATGGTCATTTTGCCCAAGTA
1 TAGGGACAAAATGGTCATTTTGCAAAAGTA
45417370 TAG
1 TAG
45417373 ATTATTGAGT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.35, C:0.10, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGACAAAATGGTCATTTTGCAAAAGTA
Found at i:45417767 original size:48 final size:46
Alignment explanation
Indices: 45417677--45417792 Score: 139
Period size: 47 Copynumber: 2.5 Consensus size: 46
45417667 TGTGAGCTAA
*
45417677 TGTATGACATGTCTGGGACAT-GCATCGGCCACATTACGAGAGCCAG
1 TGTAAGACATGTCTGGGACATGGCATCGG-CACATTACGAGAGCCAG
*
45417723 TGTAAGACCATGTCTGGGACATGGCATCGG-A-ATTGAGACGAGAGCTAG
1 TGTAAGA-CATGTCTGGGACATGGCATCGGCACATT---ACGAGAGCCAG
*
45417771 TGTAATACATGTCTGGGACATG
1 TGTAAGACATGTCTGGGACATG
45417793 TATTAGCCTG
Statistics
Matches: 62, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
45 3 0.05
46 7 0.11
47 29 0.47
48 23 0.37
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGGCATCGGCACATTACGAGAGCCAG
Found at i:45425739 original size:47 final size:47
Alignment explanation
Indices: 45425655--45426067 Score: 619
Period size: 47 Copynumber: 8.6 Consensus size: 47
45425645 TATTTGAATA
*
45425655 AATGTGAAAGTGTATATCTATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATA--TATGTGATAAGGCCGAATGGCCGATGTGATG
*
45425704 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCCATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
45425751 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCGATGTGATG
45425800 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
45425849 AATGTGAAAGTGTATATATATGTGATAAGAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGAT-A-AGGCCGAATGGCCGATGTGATG
* *
45425900 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
45425947 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
* * * * *
45425994 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
* *
45426041 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
45426068 TCCCGAAGGG
Statistics
Matches: 344, Mismatches: 16, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
47 172 0.50
48 1 0.00
49 137 0.40
50 1 0.00
51 33 0.10
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
Found at i:45425827 original size:145 final size:145
Alignment explanation
Indices: 45425655--45426067 Score: 640
Period size: 145 Copynumber: 2.9 Consensus size: 145
45425645 TATTTGAATA
*
45425655 AATGTGAAAGTGTATATCTATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
45425720 TATGTGATAAGGCCGAATGGCCCATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGA
66 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGA
*
45425785 ATGGCCGATGTGATG
131 ATAGCCGATGTGATG
*
45425800 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
* *
45425865 TATATGTGATAAGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGG
64 TATATGTGAT-A-AGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
*
45425928 CCTAATAGCCGATGTGATG
127 CCGAATAGCCGATGTGATG
45425947 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * * * *
45426010 TATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
66 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
45426068 TCCCGAAGGG
Statistics
Matches: 248, Mismatches: 14, Indels: 16
0.89 0.05 0.06
Matches are distributed among these distances:
141 38 0.15
142 2 0.01
143 13 0.05
145 105 0.42
147 57 0.23
148 1 0.00
149 32 0.13
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (145 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGA
ATAGCCGATGTGATG
Found at i:45430140 original size:46 final size:46
Alignment explanation
Indices: 45429996--45430260 Score: 215
Period size: 47 Copynumber: 5.7 Consensus size: 46
45429986 GAGTAAAGTA
* **
45429996 CCGATGCCATGTCCCAGACATGGTCTCACACTGGCTCATA-TCTC-AAT
1 CCGATGCCATGTCCCAGACAT-GTCTTACACTGGCT--TACTCTCGAGG
* * *
45430043 TCGATGCCATGTCCCAGACATGGTCTTACACTGAC-TA-TCATCGTGTAG
1 CCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTTACTC-TCGAG--G
45430091 CCGATG-CATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGG
1 CCGATGCCATGTCCCAGACATGTCTTACACTGGCTTAC-TCTCGAGG
* * * *
45430137 CCGAT-ACATGTCCCAGACATGTCTTACACTAGCACTT-GTCTCGATG
1 CCGATGCCATGTCCCAGACATGTCTTACACT-G-GCTTACTCTCGAGG
* ** *
45430183 CCGATGCCATGTCCCAGACATGTTCTTACACTTGCTCTCACAAT-GTGG
1 CCGATGCCATGTCCCAGACATG-TCTTACACTGGCT-T-ACTCTCGAGG
*
45430231 TCGATG-CATGTCCCAGACATGTCTTACACT
1 CCGATGCCATGTCCCAGACATGTCTTACACT
45430261 AGCTCACAAT
Statistics
Matches: 182, Mismatches: 21, Indels: 31
0.78 0.09 0.13
Matches are distributed among these distances:
44 4 0.02
45 2 0.01
46 65 0.36
47 80 0.44
48 28 0.15
49 3 0.02
ACGTcount: A:0.22, C:0.31, G:0.19, T:0.28
Consensus pattern (46 bp):
CCGATGCCATGTCCCAGACATGTCTTACACTGGCTTACTCTCGAGG
Found at i:45430255 original size:140 final size:140
Alignment explanation
Indices: 45430003--45430260 Score: 360
Period size: 140 Copynumber: 1.8 Consensus size: 140
45429993 GTACCGATGC
* * *
45430003 CATGTCCCAGACATGGTCTCACACTGGCTCATATCTCAATTCGATGCCATGTCCCAGACATGGTC
1 CATGTCCCAGACATGGTCTCACACTAGCACATATCTCAATCCGATGCCATGTCCCAGACATGGTC
*
45430068 TTACACTGACTATCATCGTGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTC
66 TTACACTGACTATCATCATGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTC
45430133 GAGGCCGATA
131 GAGGCCGATA
* * * * *
45430143 CATGTCCCAGACAT-GTCTTACACTAGCACTTGTCTCGATGCCGATGCCATGTCCCAGACATGTT
1 CATGTCCCAGACATGGTCTCACACTAGCACATATCTCAAT-CCGATGCCATGTCCCAGACATGGT
* * *
45430207 CTTACACTTG-CTCTCA-CAATGTGGTCGATGCATGTCCCAGACATGTCTTACACT
65 CTTACAC-TGACTATCATC-ATGTAGCCGATGCATGTCCCAGACATGTCTTACACT
45430261 AGCTCACAAT
Statistics
Matches: 103, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
139 20 0.19
140 81 0.79
141 2 0.02
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.28
Consensus pattern (140 bp):
CATGTCCCAGACATGGTCTCACACTAGCACATATCTCAATCCGATGCCATGTCCCAGACATGGTC
TTACACTGACTATCATCATGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTC
GAGGCCGATA
Found at i:45431078 original size:15 final size:16
Alignment explanation
Indices: 45431042--45431071 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
45431032 ACATATCATT
45431042 TATTTCATTATATCAA
1 TATTTCATTATATCAA
45431058 TATTTCA-TATATCA
1 TATTTCATTATATCA
45431072 TAGTTTCCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50
Consensus pattern (16 bp):
TATTTCATTATATCAA
Found at i:45435538 original size:30 final size:30
Alignment explanation
Indices: 45435479--45435541 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
45435469 TTTTCGGACC
* * *
45435479 TAGGGGTAAAATGGTTATTTTGTAAAAGTA
1 TAGGGGCAAAATGGTCATTTTGCAAAAGTA
**
45435509 TAGGGGCAAAATGGTCATTTTGCCCAAGTA
1 TAGGGGCAAAATGGTCATTTTGCAAAAGTA
45435539 TAG
1 TAG
45435542 ATTATTGAGT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.32
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTGCAAAAGTA
Found at i:45437252 original size:22 final size:21
Alignment explanation
Indices: 45437227--45437267 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
45437217 TCGAATTGGT
45437227 CACACGGGCGTGTTGCCCCTCC
1 CACACGGGCGTG-TGCCCCTCC
* *
45437249 CACATGGGTGTGTGCCCCT
1 CACACGGGCGTGTGCCCCT
45437268 GTGGCTAGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.10, C:0.39, G:0.29, T:0.22
Consensus pattern (21 bp):
CACACGGGCGTGTGCCCCTCC
Found at i:45442099 original size:23 final size:23
Alignment explanation
Indices: 45442073--45442118 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
45442063 CTTGCTTTTA
45442073 TATTATATAT-TGTAAGATTATTT
1 TATTATATATAT-TAAGATTATTT
*
45442096 TATTATATATATTAATATTATTT
1 TATTATATATATTAAGATTATTT
45442119 ATTGTCTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 20 0.95
24 1 0.05
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (23 bp):
TATTATATATATTAAGATTATTT
Found at i:45442181 original size:37 final size:35
Alignment explanation
Indices: 45442089--45442188 Score: 89
Period size: 37 Copynumber: 2.8 Consensus size: 35
45442079 ATATTGTAAG
*
45442089 ATTATTTTATTATATATATTAATATTATTTATTGTCT
1 ATTATTTT-TTATAT-TATTATTATTATTTATTGTCT
* * * *
45442126 ATTATTTTTCACA-AATTATTATTA-TTATTTTACAT
1 ATTATTTTTTATATTATTATTATTATTTATTGT-C-T
45442161 CATTATTTTTTATATTATTATTA-TATTT
1 -ATTATTTTTTATATTATTATTATTATTT
45442189 TTACTTGTAT
Statistics
Matches: 50, Mismatches: 8, Indels: 10
0.74 0.12 0.15
Matches are distributed among these distances:
33 6 0.12
34 10 0.20
35 1 0.02
36 16 0.32
37 17 0.34
ACGTcount: A:0.32, C:0.05, G:0.01, T:0.62
Consensus pattern (35 bp):
ATTATTTTTTATATTATTATTATTATTTATTGTCT
Found at i:45442363 original size:53 final size:53
Alignment explanation
Indices: 45442251--45442365 Score: 128
Period size: 53 Copynumber: 2.2 Consensus size: 53
45442241 AACTTAATTA
* *
45442251 TTTTATATTATATCTATTATATTTCTTATTTTCTATATATTTAAATTATATTT
1 TTTTATATAACATCTATTATATTTCTTATTTTCTATATATTTAAATTATATTT
* * * *
45442304 TATTATATAACATTTATTATATTT-TTATTTT-TATTCTATATT-ACTTATCATTT
1 TTTTATATAACATCTATTATATTTCTTATTTTCTA-TATAT-TTAAATTAT-ATTT
45442357 TTTTATATA
1 TTTTATATA
45442366 TGTTATGTAT
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
51 2 0.04
52 16 0.31
53 34 0.65
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.63
Consensus pattern (53 bp):
TTTTATATAACATCTATTATATTTCTTATTTTCTATATATTTAAATTATATTT
Found at i:45442891 original size:34 final size:34
Alignment explanation
Indices: 45442840--45442916 Score: 145
Period size: 34 Copynumber: 2.2 Consensus size: 34
45442830 ATTGATATTG
45442840 TATTACTCTTTTTTGTATATCATGCATTATTTAAT
1 TATTACT-TTTTTTGTATATCATGCATTATTTAAT
45442875 TATTACTTTTTTTGTATATCATGCATTATTTAAT
1 TATTACTTTTTTTGTATATCATGCATTATTTAAT
45442909 TATTACTT
1 TATTACTT
45442917 CGTATGTTTG
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
34 35 0.83
35 7 0.17
ACGTcount: A:0.26, C:0.10, G:0.05, T:0.58
Consensus pattern (34 bp):
TATTACTTTTTTTGTATATCATGCATTATTTAAT
Found at i:45444291 original size:13 final size:13
Alignment explanation
Indices: 45444273--45444297 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45444263 TAATGGTATA
45444273 TTGAATCCATGAC
1 TTGAATCCATGAC
45444286 TTGAATCCATGA
1 TTGAATCCATGA
45444298 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:45446037 original size:49 final size:49
Alignment explanation
Indices: 45445981--45446344 Score: 537
Period size: 49 Copynumber: 7.6 Consensus size: 49
45445971 TATTTGAATA
* *
45445981 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
45446030 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
45446077 AATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
45446126 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
45446175 AATGTGAAAGTG--TATATACGTGATAGGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
45446222 AATGTGAAAGTG--TATATATGTGATAAGGACTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
45446269 AATGTGGAAGTGTATATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
45446318 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
45446345 TCCCGAAGGG
Statistics
Matches: 288, Mismatches: 23, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
47 140 0.49
48 1 0.00
49 147 0.51
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:45446073 original size:47 final size:48
Alignment explanation
Indices: 45445981--45446344 Score: 520
Period size: 47 Copynumber: 7.6 Consensus size: 48
45445971 TATTTGAATA
* *
45445981 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
45446030 AATGTGAAAGTG-TATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
45446077 AATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATG
45446126 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
45446175 AATGTGAAAGTG-TATATACGTGATAGGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
45446222 AATGTGAAAGTG-TATATATGTGATAAGGACTAATGGCCGATGTGATG
1 AATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
45446269 AATGTGGAAGTGTATATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
45446318 GATGTGAAAGTG-TATAAATGTGATAAG
1 AATGTGAAAGTGATATATATGTGATAAG
45446345 TCCCGAAGGG
Statistics
Matches: 287, Mismatches: 24, Indels: 10
0.89 0.07 0.03
Matches are distributed among these distances:
47 144 0.50
49 143 0.50
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (48 bp):
AATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:45446102 original size:96 final size:96
Alignment explanation
Indices: 45445981--45446344 Score: 570
Period size: 96 Copynumber: 3.8 Consensus size: 96
45445971 TATTTGAATA
*
45445981 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
45446046 TATGTGATAAGGCCTAATAGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* *
45446077 AATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TA
45446142 TATATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
45446175 AATGTGAAAGTG--TATATACGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
45446238 TATGTGATAAGGACTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
45446269 AATGTGGAAGTGTATATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
45446334 AATGTGATAAG
66 TATGTGATAAG
45446345 TCCCGAAGGG
Statistics
Matches: 249, Mismatches: 15, Indels: 8
0.92 0.06 0.03
Matches are distributed among these distances:
94 45 0.18
96 158 0.63
98 46 0.18
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (96 bp):
AATGTGAAAGTGTATATATATGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
TATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:45446519 original size:37 final size:37
Alignment explanation
Indices: 45446463--45446541 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
45446453 CCGAGCTCTA
* * *
45446463 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
45446500 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
45446537 AAGAC
1 AAGAC
45446542 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:45448454 original size:43 final size:43
Alignment explanation
Indices: 45448406--45448508 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
45448396 TTGGTTTTCA
45448406 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
45448449 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
45448492 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
45448509 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:45448525 original size:29 final size:29
Alignment explanation
Indices: 45448490--45448563 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
45448480 GTTGTGAGAT
* *
45448490 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
45448519 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
45448548 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
45448564 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:45450818 original size:13 final size:13
Alignment explanation
Indices: 45450800--45450824 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45450790 TAATGGTATA
45450800 TTGAATCCATGAC
1 TTGAATCCATGAC
45450813 TTGAATCCATGA
1 TTGAATCCATGA
45450825 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:45452567 original size:49 final size:49
Alignment explanation
Indices: 45452511--45452874 Score: 546
Period size: 49 Copynumber: 7.6 Consensus size: 49
45452501 TATTTGAATA
* *
45452511 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
45452560 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
45452607 AATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
45452656 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
45452705 AATGTGAAAGTG--TATATACGTGATAGGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
45452752 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
45452799 AATGTGGAAGTGTATATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
45452848 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
45452875 TCCCGAAGGG
Statistics
Matches: 290, Mismatches: 21, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
47 141 0.49
48 1 0.00
49 148 0.51
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:45452603 original size:47 final size:48
Alignment explanation
Indices: 45452511--45452874 Score: 529
Period size: 47 Copynumber: 7.6 Consensus size: 48
45452501 TATTTGAATA
* *
45452511 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
45452560 AATGTGAAAGTG-TATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
45452607 AATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATG
45452656 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
45452705 AATGTGAAAGTG-TATATACGTGATAGGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
45452752 AATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
45452799 AATGTGGAAGTGTATATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
45452848 GATGTGAAAGTG-TATAAATGTGATAAG
1 AATGTGAAAGTGATATATATGTGATAAG
45452875 TCCCGAAGGG
Statistics
Matches: 289, Mismatches: 22, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
47 145 0.50
49 144 0.50
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (48 bp):
AATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:45452632 original size:96 final size:96
Alignment explanation
Indices: 45452511--45452874 Score: 579
Period size: 96 Copynumber: 3.8 Consensus size: 96
45452501 TATTTGAATA
*
45452511 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
45452576 TATGTGATAAGGCCTAATAGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* *
45452607 AATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TA
45452672 TATATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
45452705 AATGTGAAAGTG--TATATACGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
45452768 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
45452799 AATGTGGAAGTGTATATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
45452864 AATGTGATAAG
66 TATGTGATAAG
45452875 TCCCGAAGGG
Statistics
Matches: 250, Mismatches: 14, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
94 46 0.18
96 158 0.63
98 46 0.18
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (96 bp):
AATGTGAAAGTGTATATATATGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
TATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:45453049 original size:37 final size:37
Alignment explanation
Indices: 45452993--45453071 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
45452983 CCGAGCTCTA
* * *
45452993 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
45453030 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
45453067 AAGAC
1 AAGAC
45453072 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:45455134 original size:8 final size:9
Alignment explanation
Indices: 45455108--45455133 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
45455098 TAATTCATTT
45455108 TTTAAAAAA
1 TTTAAAAAA
45455117 TTTAAAAAA
1 TTTAAAAAA
45455126 TTTAAAAA
1 TTTAAAAA
45455134 TATATTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (9 bp):
TTTAAAAAA
Found at i:45455183 original size:30 final size:31
Alignment explanation
Indices: 45455147--45455205 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
45455137 ATTTTTTATA
*
45455147 AATTTTATACATTTT-T-AATATTTTAAAAAT
1 AATTTTACA-ATTTTATGAATATTTTAAAAAT
*
45455177 AATTTTACAATTTTATGAATTTTTTAAAA
1 AATTTTACAATTTTATGAATATTTTAAAA
45455206 TTTAAAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 5 0.20
30 9 0.36
31 11 0.44
ACGTcount: A:0.42, C:0.03, G:0.02, T:0.53
Consensus pattern (31 bp):
AATTTTACAATTTTATGAATATTTTAAAAAT
Found at i:45457798 original size:18 final size:19
Alignment explanation
Indices: 45457767--45457804 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
45457757 GTTAGTTAGG
45457767 TAAATGAAAATTTAT-TTT
1 TAAATGAAAATTTATATTT
* *
45457785 TAAATTAAATTTTATATTT
1 TAAATGAAAATTTATATTT
45457804 T
1 T
45457805 TATTTTAAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (19 bp):
TAAATGAAAATTTATATTT
Found at i:45457870 original size:27 final size:27
Alignment explanation
Indices: 45457837--45457897 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
45457827 GAAACCTTTT
* *
45457837 TAATTTTAAATTTAAGTTTTAAAATAAA
1 TAATTTTAAATATAA-TTTGAAAATAAA
* *
45457865 T-ATTTTTAATATAATTTGAAATTAAA
1 TAATTTTAAATATAATTTGAAAATAAA
45457891 TAATTTT
1 TAATTTT
45457898 TTATATTTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
26 11 0.39
27 16 0.57
28 1 0.04
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (27 bp):
TAATTTTAAATATAATTTGAAAATAAA
Found at i:45460687 original size:20 final size:22
Alignment explanation
Indices: 45460638--45460681 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
45460628 TTAAGCCAAG
45460638 TCCAATTACCAAGCTAAAAAAT
1 TCCAATTACCAAGCTAAAAAAT
*
45460660 TCCAATTAGCAAGCTAAAAAAT
1 TCCAATTACCAAGCTAAAAAAT
45460682 CAATTAAATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.50, C:0.20, G:0.07, T:0.23
Consensus pattern (22 bp):
TCCAATTACCAAGCTAAAAAAT
Found at i:45464254 original size:40 final size:40
Alignment explanation
Indices: 45464180--45464321 Score: 216
Period size: 40 Copynumber: 3.6 Consensus size: 40
45464170 AACCCAAGTA
* *
45464180 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
*
45464219 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
45464259 CCTTCGGGACTTAGCCCGGATATAGTCACTAACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
45464299 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
45464322 CATTCGAATA
Statistics
Matches: 95, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
39 12 0.13
40 80 0.84
41 3 0.03
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:45482020 original size:40 final size:40
Alignment explanation
Indices: 45481909--45482013 Score: 151
Period size: 40 Copynumber: 2.6 Consensus size: 40
45481899 TCGAATGATG
*
45481909 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
45481948 TCCTGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
45481989 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
45482014 AACGAGTAGC
Statistics
Matches: 58, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
39 9 0.16
40 47 0.81
41 2 0.03
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:45489526 original size:17 final size:17
Alignment explanation
Indices: 45489504--45489536 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
45489494 TTCCCATGTG
45489504 GGGCCCATGTGCCCGTA
1 GGGCCCATGTGCCCGTA
45489521 GGGCCCATGTGCCCGT
1 GGGCCCATGTGCCCGT
45489537 TTCGGCCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.09, C:0.36, G:0.36, T:0.18
Consensus pattern (17 bp):
GGGCCCATGTGCCCGTA
Found at i:45492670 original size:15 final size:15
Alignment explanation
Indices: 45492652--45492708 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
45492642 TATATGTTTT
45492652 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
45492667 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
45492682 ATTGAATTTATATTG
1 ATTGAATTTATATTG
45492697 ATTGAA-TTATAT
1 ATTGAATTTATAT
45492709 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:45492687 original size:30 final size:28
Alignment explanation
Indices: 45492648--45492706 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 28
45492638 TGAATATATG
45492648 TTTTATTGAATTTATATTGATTGAAATTA
1 TTTTATTGAATTTATATTGATTG-AATTA
45492677 TTTTGATTGAATTTATATTGATTGAATTA
1 TTTT-ATTGAATTTATATTGATTGAATTA
45492706 T
1 T
45492707 ATAATATATA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 10 0.34
30 19 0.66
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (28 bp):
TTTTATTGAATTTATATTGATTGAATTA
Found at i:45493128 original size:21 final size:21
Alignment explanation
Indices: 45493093--45493188 Score: 129
Period size: 21 Copynumber: 4.5 Consensus size: 21
45493083 AGGCACTTTA
45493093 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTA--TCAGGCACCTCG
45493116 TGTGTCGTATCAGGCACCTCG
1 TGTGTCGTATCAGGCACCTCG
45493137 TGTGTCGTATCAGGCACCTCG
1 TGTGTCGTATCAGGCACCTCG
* * * **
45493158 TGTGTCGTTTTAGGCACTTTA
1 TGTGTCGTATCAGGCACCTCG
45493179 TGTGTCGTAT
1 TGTGTCGTAT
45493189 ACTGATCAGG
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
21 58 0.87
23 9 0.13
ACGTcount: A:0.14, C:0.23, G:0.27, T:0.36
Consensus pattern (21 bp):
TGTGTCGTATCAGGCACCTCG
Found at i:45493163 original size:42 final size:42
Alignment explanation
Indices: 45493080--45493188 Score: 137
Period size: 42 Copynumber: 2.5 Consensus size: 42
45493070 GGCTTTATCG
* *
45493080 ATCAGGCACTTTATGTGTCGTATTTCAGGCACCTCGTGTGTCGT
1 ATCAGGCACCTCATGTGTCGTA--TCAGGCACCTCGTGTGTCGT
*
45493124 ATCAGGCACCTCGTGTGTCGTATCAGGCACCTCGTGTGTCGT
1 ATCAGGCACCTCATGTGTCGTATCAGGCACCTCGTGTGTCGT
* * * *
45493166 TTTAGGCACTTTATGTGTCGTAT
1 ATCAGGCACCTCATGTGTCGTAT
45493189 ACTGATCAGG
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
42 38 0.67
44 19 0.33
ACGTcount: A:0.16, C:0.23, G:0.26, T:0.36
Consensus pattern (42 bp):
ATCAGGCACCTCATGTGTCGTATCAGGCACCTCGTGTGTCGT
Found at i:45504561 original size:43 final size:43
Alignment explanation
Indices: 45504500--45504583 Score: 143
Period size: 43 Copynumber: 2.0 Consensus size: 43
45504490 TCCTTTCTTG
45504500 GGGACACATATTACAGGGCTTACCCACAAGCTGTTCGAGATTA
1 GGGACACATATTACAGGGCTTACCCACAAGCTGTTCGAGATTA
*
45504543 GGGACACAT-TGTACAGGGCTTACCCACGAGCTGTTCGAGAT
1 GGGACACATAT-TACAGGGCTTACCCACAAGCTGTTCGAGAT
45504584 CGAATTCAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
42 1 0.03
43 38 0.97
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (43 bp):
GGGACACATATTACAGGGCTTACCCACAAGCTGTTCGAGATTA
Found at i:45509760 original size:29 final size:29
Alignment explanation
Indices: 45509713--45509870 Score: 230
Period size: 29 Copynumber: 5.5 Consensus size: 29
45509703 CATGAGATTG
* * * *
45509713 GCACTAAGTGTGCGGGTTTAAAT-TGCATA
1 GCACTAAGTGTGCGAGTTTGATTATGTA-A
*
45509742 GCACTAAGTGTGCAAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATGTAA
45509771 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATGTAA
45509800 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATGTAA
* *
45509829 GCACTAAGTGTGCGAGTTTTATTATATAA
1 GCACTAAGTGTGCGAGTTTGATTATGTAA
45509858 -CACTAAGTGTGCG
1 GCACTAAGTGTGCG
45509871 GACTTACTAT
Statistics
Matches: 120, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
28 13 0.11
29 104 0.87
30 3 0.03
ACGTcount: A:0.28, C:0.12, G:0.26, T:0.34
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTTGATTATGTAA
Found at i:45518503 original size:28 final size:27
Alignment explanation
Indices: 45518463--45518517 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 27
45518453 TTTACAGTTC
45518463 GGGCCTGAGCCCATTACAGAAT-CAATTT
1 GGGCCTGAGCCCATT-CA-AATACAATTT
*
45518491 GGGCCTTAGCCCATTCAAATACAATTT
1 GGGCCTGAGCCCATTCAAATACAATTT
45518518 CAAGATTATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 3 0.12
27 8 0.32
28 14 0.56
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (27 bp):
GGGCCTGAGCCCATTCAAATACAATTT
Found at i:45521141 original size:27 final size:27
Alignment explanation
Indices: 45521110--45521207 Score: 151
Period size: 27 Copynumber: 3.6 Consensus size: 27
45521100 TAGAATACTT
* *
45521110 TAGTTTCTCAAATTACCAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
45521137 TAGTTTATAAAATTACCAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
* * *
45521164 TAGTTTGTAAAATTATCAGAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
45521191 TAGTTTATAAAATTACC
1 TAGTTTATAAAATTACC
45521208 CTTGATTTGT
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 64 1.00
ACGTcount: A:0.40, C:0.21, G:0.06, T:0.33
Consensus pattern (27 bp):
TAGTTTATAAAATTACCAAAATACCCC
Found at i:45521249 original size:27 final size:27
Alignment explanation
Indices: 45521198--45521610 Score: 219
Period size: 27 Copynumber: 15.3 Consensus size: 27
45521188 CCCTAGTTTA
* *
45521198 TAAAATTACCCTTGATTTGTGAAATTAC
1 TAAAA-TACCCTCGATTTGTAAAATTAC
** *
45521226 TAAAATACCCTCGACCTGTAAAATTAT
1 TAAAATACCCTCGATTTGTAAAATTAC
*
45521253 TAAAATACCCTCGACTTGTAAAATTAC
1 TAAAATACCCTCGATTTGTAAAATTAC
* * * *
45521280 CAAAGTACCCCCGATTTATAAAATTAC
1 TAAAATACCCTCGATTTGTAAAATTAC
*
45521307 -ATAAATATCCTCGATTTGTAAAATTAC
1 TA-AAATACCCTCGATTTGTAAAATTAC
* *
45521334 TGAAATACCCTC-ATTTTGCAAAATTAC
1 TAAAATACCCTCGA-TTTGTAAAATTAC
* *
45521361 TGAAATACCCTCAATTTGTAAAATTAC
1 TAAAATACCCTCGATTTGTAAAATTAC
* ** *
45521388 TGAAATACTCCT-G-TAAGATAGAATTAC
1 TAAAATAC-CCTCGATTTG-TAAAATTAC
* *** ** *
45521415 CATTTTACCCTCGATTTACAGAATTAC
1 TAAAATACCCTCGATTTGTAAAATTAC
***** *
45521442 CGTTTTACCCTCGATTTATAAAATTAC
1 TAAAATACCCTCGATTTGTAAAATTAC
* *** ** *
45521469 CATTTTACCCTCGATTTACAAAATTAT
1 TAAAATACCCTCGATTTGTAAAATTAC
* * **
45521496 TGAAATACCCT-TAGTTTACAAAATTAC
1 TAAAATACCCTCGA-TTTGTAAAATTAC
* ***
45521523 CAAAATACCCTCGATCAATAAAATTAC
1 TAAAATACCCTCGATTTGTAAAATTAC
* **
45521550 CAAAATACCC-CTGATTTGTGGAATTAC
1 TAAAATACCCTC-GATTTGTAAAATTAC
* **
45521577 CAAAATACCC-CTGATTTGTGGAATTAC
1 TAAAATACCCTC-GATTTGTAAAATTAC
*
45521604 CAAAATA
1 TAAAATA
45521611 TAGGGTAGAA
Statistics
Matches: 317, Mismatches: 57, Indels: 23
0.80 0.14 0.06
Matches are distributed among these distances:
26 9 0.03
27 297 0.94
28 11 0.03
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.32
Consensus pattern (27 bp):
TAAAATACCCTCGATTTGTAAAATTAC
Found at i:45521641 original size:27 final size:27
Alignment explanation
Indices: 45521611--45522056 Score: 626
Period size: 27 Copynumber: 16.6 Consensus size: 27
45521601 TACCAAAATA
** *
45521611 TAGGGTAGAATTATTGAAATACCCTTG
1 TAGGGTAGAATTACCGAAATACCCCTG
45521638 TAGGGTAGAATTACCGAAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
*
45521665 TAGGGTAGAATTACTGAAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
45521692 TAGGGTAGAATTACCGAAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
* * * *
45521719 TAGGGTAAAATTATCGCAATACCCCTA
1 TAGGGTAGAATTACCGAAATACCCCTG
45521746 TAGGGTAGAATTACCGAAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
* *
45521773 TAGGGTAGAATTATCGCAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
* * *
45521800 TAGGGTAGAATTATCGCAATACCCCTA
1 TAGGGTAGAATTACCGAAATACCCCTG
45521827 TAGGGTAGAATTACCGAAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
*
45521854 TAGGGTAGAATTACC-AGAATACCCTTG
1 TAGGGTAGAATTACCGA-AATACCCCTG
* *
45521881 CAGGGTAGAATTATCGAAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
* *
45521908 TAGGGTAGAATTACTGAAATACCCTTG
1 TAGGGTAGAATTACCGAAATACCCCTG
*
45521935 TAGGGTAGAATTATCGAAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
* *
45521962 TAGGGTAGAATTATCGAAATACCCTTG
1 TAGGGTAGAATTACCGAAATACCCCTG
* *
45521989 TAGGGTAGAATTACCAAAATACCCCTT
1 TAGGGTAGAATTACCGAAATACCCCTG
* * *
45522016 TAGCGTAGAATTACCGAGATA-CCTTG
1 TAGGGTAGAATTACCGAAATACCCCTG
*
45522042 TAGGGTAAAATTACC
1 TAGGGTAGAATTACC
45522057 ATTTTGCCTC
Statistics
Matches: 375, Mismatches: 42, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
26 17 0.05
27 357 0.95
28 1 0.00
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.26
Consensus pattern (27 bp):
TAGGGTAGAATTACCGAAATACCCCTG
Found at i:45522545 original size:22 final size:22
Alignment explanation
Indices: 45522483--45522547 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 22
45522473 TTAAAGCCTT
* *
45522483 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
* * *
45522505 CT-ACATATAGCTCTATGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
45522527 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
45522548 ACGTATTTGC
Statistics
Matches: 32, Mismatches: 9, Indels: 4
0.71 0.20 0.09
Matches are distributed among these distances:
21 1 0.03
22 30 0.94
23 1 0.03
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:45522736 original size:27 final size:27
Alignment explanation
Indices: 45522706--45522807 Score: 134
Period size: 27 Copynumber: 3.8 Consensus size: 27
45522696 ATTCTGTTAA
* *
45522706 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
45522733 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
*
45522760 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
45522787 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
45522808 ATAACTGAGC
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 8 0.12
27 52 0.78
28 7 0.10
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:45522982 original size:6 final size:6
Alignment explanation
Indices: 45522944--45523085 Score: 94
Period size: 6 Copynumber: 22.8 Consensus size: 6
45522934 TTGCATTCAC
* * * *
45522944 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTTTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
45522994 -TTACCTG ATACTG ATTTTG ATTTTG ATTCT- ATTACCTG ATACTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
*
45523044 ATTCTG ATTCT- ATCACCTG ATTCTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCT
45523086 AGTTCTAGTT
Statistics
Matches: 109, Mismatches: 14, Indels: 26
0.73 0.09 0.17
Matches are distributed among these distances:
5 9 0.08
6 80 0.73
7 14 0.13
8 6 0.06
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:45522990 original size:31 final size:31
Alignment explanation
Indices: 45522944--45523086 Score: 205
Period size: 31 Copynumber: 4.6 Consensus size: 31
45522934 TTGCATTCAC
*
45522944 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTTTGATTCTATTACCTGATACTG
* *
45522976 ATTCTGATTTTGATTTTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTATTACCTGATACTG
*
45523007 ATTTTGATTTTGATTCTATTACCTGATACTG
1 ATTCTGATTTTGATTCTATTACCTGATACTG
* * *
45523038 ATTCTGATTCTGATTCTATCACCTGATTCTG
1 ATTCTGATTTTGATTCTATTACCTGATACTG
*
45523069 ATTCTGATTCTGATTCTA
1 ATTCTGATTTTGATTCTA
45523087 GTTCTAGTTC
Statistics
Matches: 103, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
31 96 0.93
32 7 0.07
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.50
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTATTACCTGATACTG
Found at i:45523032 original size:25 final size:24
Alignment explanation
Indices: 45522968--45523051 Score: 73
Period size: 25 Copynumber: 3.4 Consensus size: 24
45522958 TTCTGTTACC
* *
45522968 TGATACTGATTCTGATTTTGATTT
1 TGATTCTGATACTGATTTTGATTT
45522992 TG-TTACCTGATACTGATTTTGATTT
1 TGATT--CTGATACTGATTTTGATTT
** *
45523017 TGATTCT-ATTACCTGATACTGATTC
1 TGATTCTGA-TA-CTGATTTTGATTT
45523042 TGATTCTGAT
1 TGATTCTGAT
45523052 TCTATCACCT
Statistics
Matches: 49, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
23 2 0.04
24 6 0.12
25 38 0.78
26 3 0.06
ACGTcount: A:0.21, C:0.13, G:0.15, T:0.50
Consensus pattern (24 bp):
TGATTCTGATACTGATTTTGATTT
Found at i:45530778 original size:26 final size:26
Alignment explanation
Indices: 45530749--45530798 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
45530739 AGTCACACAT
45530749 CTCAT-AGGAGTATAAC-AGTCATTTAC
1 CTCATAAGG-GTATAACGA-TCATTTAC
45530775 CTCATAAGGGTATAACGATCATTT
1 CTCATAAGGGTATAACGATCATTT
45530799 CAATAAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (26 bp):
CTCATAAGGGTATAACGATCATTTAC
Found at i:45540200 original size:25 final size:25
Alignment explanation
Indices: 45540164--45540214 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 25
45540154 TTATCTTGAT
45540164 AAATATTAAATTAAAT-TTAATATTA
1 AAATATTAAATTAAATATT-ATATTA
*
45540189 AAATAATT-AATTTAATATTATATTA
1 AAAT-ATTAAATTAAATATTATATTA
45540214 A
1 A
45540215 TAAAATACTC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
25 18 0.78
26 5 0.22
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (25 bp):
AAATATTAAATTAAATATTATATTA
Found at i:45540215 original size:20 final size:21
Alignment explanation
Indices: 45540166--45540220 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
45540156 ATCTTGATAA
45540166 ATATTAAATTAAATTTAATATT
1 ATATT-AATTAAATTTAATATT
* *
45540188 AAAATAATT-AATTTAATATT
1 ATATTAATTAAATTTAATATT
*
45540208 ATATTAATAAAAT
1 ATATTAATTAAAT
45540221 ACTCTTAAGA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
20 17 0.63
21 7 0.26
22 3 0.11
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
ATATTAATTAAATTTAATATT
Found at i:45544129 original size:24 final size:24
Alignment explanation
Indices: 45544097--45544148 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
45544087 AAGTCAACCA
*
45544097 AGATTCTTTTCACTTAGAATAAGG
1 AGATTCTTTTCACTTAAAATAAGG
45544121 AGATTCTTTTCACTTAAAATAAGG
1 AGATTCTTTTCACTTAAAATAAGG
45544145 AGAT
1 AGAT
45544149 GATAGCTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.37
Consensus pattern (24 bp):
AGATTCTTTTCACTTAAAATAAGG
Found at i:45550287 original size:29 final size:29
Alignment explanation
Indices: 45550248--45550326 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
45550238 CTTAATAATC
*
45550248 AACCACGCACACTTAGTGCCACGTACTTT-A
1 AACC-CGCACACTTAGTGCCACGCA-TTTCA
* *
45550278 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCACGCATTTCA
*
45550307 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
45550327 ATCTCACAAC
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
28 3 0.07
29 37 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.34, G:0.15, T:0.23
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCACGCATTTCA
Found at i:45559800 original size:40 final size:40
Alignment explanation
Indices: 45559707--45559971 Score: 295
Period size: 40 Copynumber: 6.7 Consensus size: 40
45559697 GCTCCTCGTT
* * * *
45559707 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
45559747 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
45559786 CGAATGCCTACGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
45559826 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
45559866 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
45559906 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
45559947 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
45559972 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 22, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
39 39 0.20
40 143 0.73
41 15 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:45559980 original size:41 final size:41
Alignment explanation
Indices: 45559903--45559980 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
45559893 TTTGTATCTC
* * *
45559903 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
45559944 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
45559981 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:45562244 original size:79 final size:79
Alignment explanation
Indices: 45562144--45562326 Score: 201
Period size: 79 Copynumber: 2.3 Consensus size: 79
45562134 TACTCGTTCA
* * *
45562144 AATGCCTTCAGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTC-GGGCTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
45562207 ATTTAGTAAC-TCGCACC
63 ATATAGTAACTTAGCA-C
* **
45562224 AATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATA
1 AATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATA
* *
45562289 TGGTCACTTAGCAC
66 TAGTAACTTAGCAC
*
45562303 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGG-CTTAGCCCGGA
45562327 CATCATTCGA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 60 0.68
80 25 0.28
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
AATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATA
TAGTAACTTAGCAC
Found at i:45562326 original size:40 final size:40
Alignment explanation
Indices: 45562142--45562326 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
45562132 GCTACTCGTT
* * *
45562142 CAAATGCCTTCAGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
45562182 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
45562222 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
45562261 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
45562302 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
45562327 CATCATTCGA
Statistics
Matches: 123, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 78 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:45564166 original size:27 final size:27
Alignment explanation
Indices: 45564136--45564313 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
45564126 ATATCGAGTC
* * * *
45564136 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
45564163 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
45564190 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
45564218 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
45564245 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
45564272 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
45564299 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
45564314 GTACAATTTA
Statistics
Matches: 132, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
27 108 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:45564275 original size:82 final size:81
Alignment explanation
Indices: 45564157--45564312 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
45564147 TGCTATATAA
*
45564157 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
45564222 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
45564239 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
45564303 CACTTAGTGC
65 CACTTAGTGC
45564313 TGTACAATTT
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 16 0.24
82 52 0.76
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:45578679 original size:27 final size:27
Alignment explanation
Indices: 45578649--45578934 Score: 342
Period size: 27 Copynumber: 10.6 Consensus size: 27
45578639 TTAGTTTACC
45578649 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
45578676 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
45578703 AAATCACCAAAGTACCCCT-GTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
45578729 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
**
45578756 AAATTTACCAAAATACCCCTAATTTGTA
1 AAA-TTACCAAAATACCCCTGGTTTGTA
* ** *
45578784 AAATTACTAAAATA-CATTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
45578810 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
45578837 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
45578864 AAATTATCAAAATACCCCTAATTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** *
45578891 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
**
45578918 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
45578935 TCGACCTGTA
Statistics
Matches: 219, Mismatches: 37, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
26 42 0.19
27 155 0.71
28 22 0.10
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:45578916 original size:81 final size:80
Alignment explanation
Indices: 45578649--45579007 Score: 346
Period size: 81 Copynumber: 4.5 Consensus size: 80
45578639 TTAGTTTACC
* * * * * *
45578649 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATCACCAAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTATCAAA
*
45578714 GTACCCCTG-TTTGTA
66 ATA-CCCTGATTTGTA
* ** *
45578729 AAATTACCAAAATACCCTTGGTTTACAAAATTTACCAAAATACCCCTAATTTGTAAAATTA-CTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAA-TTACCAAAATACCCCTGATTTGTAAAATTATC-A
** * *
45578793 AAATACATTGGTTTATA
64 AAATACCCTGATTTGTA
* *
45578810 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTATCAAA
*
45578875 ATACCCCTAATTTGTA
66 ATA-CCCTGATTTGTA
** * ** ** **
45578891 AAATTACCAAAATACCCCTAATTTGTGAAATTACTGAAATA-CCCTCGACCTGTAAAATTATTGA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCT-GATTTGTAAAATTATCAA
*
45578955 AATACCCTCGACTTGTA
65 AATACCCT-GATTTGTA
* * * * *
45578972 AAATTACCAAAGTACCCTTGATTTATAGAATTACCA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCA
45579008 TTTTACCCTC
Statistics
Matches: 229, Mismatches: 43, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
80 73 0.32
81 156 0.68
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.31
Consensus pattern (80 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTATCAAA
ATACCCTGATTTGTA
Found at i:45578934 original size:54 final size:54
Alignment explanation
Indices: 45578649--45578907 Score: 387
Period size: 54 Copynumber: 4.8 Consensus size: 54
45578639 TTAGTTTACC
* *
45578649 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * *
45578703 AAATCACCAAAGTACCCCT-GTTTGTAAAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * *
45578756 AAATTTACCAAAATACCCCTAATTTGTAAAATTACTAAAATA-CATTGGTTTATA
1 AAA-TTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* *
45578810 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* *
45578864 AAATTATCAAAATACCCCTAATTTGTAAAATTACCAAAATACCC
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCC
45578908 CTAATTTGTG
Statistics
Matches: 185, Mismatches: 17, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
53 71 0.38
54 95 0.51
55 19 0.10
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
Found at i:45578987 original size:27 final size:26
Alignment explanation
Indices: 45578649--45579007 Score: 270
Period size: 27 Copynumber: 13.3 Consensus size: 26
45578639 TTAGTTTACC
*
45578649 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCC-GATTTGTA
* * * *
45578676 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCC-CGATTTGTA
* *
45578703 AAATCACCAAAGTACCCCTG-TTTGTA
1 AAATTACCAAAATACCCC-GATTTGTA
* * **
45578729 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCC-CGATTTGTA
*
45578756 AAATTTACCAAAATACCCCTAATTTGTA
1 AAA-TTACCAAAATACCCC-GATTTGTA
* *** * *
45578784 AAATTACTAAAATACATTGGTTTATA
1 AAATTACCAAAATACCCCGATTTGTA
*
45578810 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCGA-TTTGTA
*
45578837 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCC-GATTTGTA
* *
45578864 AAATTATCAAAATACCCCTAATTTGTA
1 AAATTACCAAAATACCCC-GATTTGTA
* *
45578891 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCC-GATTTGTA
** **
45578918 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCC-CGATTTGTA
*** *
45578945 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCC-CGATTTGTA
* * *
45578972 AAATTACCAAAGTACCCTTGATTTATA
1 AAATTACCAAAATACCC-CGATTTGTA
*
45578999 GAATTACCA
1 AAATTACCA
45579008 TTTTACCCTC
Statistics
Matches: 268, Mismatches: 55, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
26 40 0.15
27 206 0.77
28 22 0.08
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.31
Consensus pattern (26 bp):
AAATTACCAAAATACCCCGATTTGTA
Found at i:45579064 original size:27 final size:27
Alignment explanation
Indices: 45579033--45579230 Score: 202
Period size: 27 Copynumber: 7.4 Consensus size: 27
45579023 ACAAAATTAT
* *
45579033 TGAAATACCCTTGTAGGGTAGAAATGC
1 TGAAATACCCCTGTAGGGTAGAAATAC
* * * *
45579060 CGAAATATCCTTGTAGGGTAGAAATAT
1 TGAAATACCCCTGTAGGGTAGAAATAC
45579087 TGAAATACCCCTGTAGGGTAGAAATAC
1 TGAAATACCCCTGTAGGGTAGAAATAC
* * *
45579114 TGAAATA-CCTTGTAAGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAAATAC
* * *
45579140 TAAAATACCCCTGCAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAAATAC
* *
45579167 CGAAATACCCCTGTAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAAATAC
* * *
45579194 T-ACAATACTCCTGTAAGGTAGAATTAC
1 TGA-AATACCCCTGTAGGGTAGAAATAC
* *
45579221 CGAGATACCC
1 TGAAATACCC
45579231 TTATGGGGTA
Statistics
Matches: 144, Mismatches: 24, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
26 23 0.16
27 120 0.83
28 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (27 bp):
TGAAATACCCCTGTAGGGTAGAAATAC
Found at i:45579158 original size:80 final size:80
Alignment explanation
Indices: 45579033--45579230 Score: 227
Period size: 80 Copynumber: 2.5 Consensus size: 80
45579023 ACAAAATTAT
* * * * * * * **
45579033 TGAAATACCCTTGTAGGGTAGAAATGCCGAAATATCCTTGTAGGGTAGAAATATTGAAATACCCC
1 TGAAATA-CCTTGTAAGGTAGAATTACCAAAATACCCCTGCAGGGTAGAAATACCGAAATACCCC
45579098 TGTAGGGTAGAAATAC
65 TGTAGGGTAGAAATAC
* *
45579114 TGAAATACCTTGTAAGGTAGAATTACTAAAATACCCCTGCAGGGTAGAATTACCGAAATACCCCT
1 TGAAATACCTTGTAAGGTAGAATTACCAAAATACCCCTGCAGGGTAGAAATACCGAAATACCCCT
*
45579179 GTAGGGTAGAATTAC
66 GTAGGGTAGAAATAC
* * *
45579194 T-ACAATACTCCTGTAAGGTAGAATTACCGAGATACCC
1 TGA-AATAC-CTTGTAAGGTAGAATTACCAAAATACCC
45579231 TTATGGGGTA
Statistics
Matches: 99, Mismatches: 16, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
79 1 0.01
80 67 0.68
81 31 0.31
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (80 bp):
TGAAATACCTTGTAAGGTAGAATTACCAAAATACCCCTGCAGGGTAGAAATACCGAAATACCCCT
GTAGGGTAGAAATAC
Found at i:45579229 original size:107 final size:107
Alignment explanation
Indices: 45579035--45579229 Score: 257
Period size: 107 Copynumber: 1.8 Consensus size: 107
45579025 AAAATTATTG
* * * * * *
45579035 AAATACCCTTGTAGGGTAGAAATGCCGAAATATCCTTGTAGGGTAGAAATATTGAAATACCCCTG
1 AAATACCCCTGCAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAAATACTGAAATACCCCTG
* *
45579100 TAGGGTAGAAATACTGAAATACCTTGTAAGGTAGAATTACTA
66 TAAGGTAGAAATACCGAAATACCTTGTAAGGTAGAATTACTA
* * *
45579142 AAATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACT-ACAATACTCCT
1 AAATACCCCTGCAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAAATACTGA-AATACCCCT
* *
45579206 GTAAGGTAGAATTACCGAGATACC
65 GTAAGGTAGAAATACCGAAATACC
45579230 CTTATGGGGT
Statistics
Matches: 74, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
106 1 0.01
107 73 0.99
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (107 bp):
AAATACCCCTGCAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAAATACTGAAATACCCCTG
TAAGGTAGAAATACCGAAATACCTTGTAAGGTAGAATTACTA
Done.