Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 143 of 316
Found at i:45579230 original size:54 final size:53
Alignment explanation
Indices: 45579035--45579247 Score: 239
Period size: 54 Copynumber: 4.0 Consensus size: 53
45579025 AAAATTATTG
* * * * *
45579035 AAATACCCTTGTAGGGTAGAAATGCCGAAATATCCTTGTAGGGTAGAAATATT
1 AAATACCCCTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAGAATTACT
* *
45579088 GAAATACCCCTGTAGGGTAGAAATACTGAAATA-CCTTGTAAGGTAGAATTACT
1 -AAATACCCCTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAGAATTACT
* * *
45579141 AAAATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACT
1 -AAATACCCCTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAGAATTACT
* * * * * * *
45579195 ACAATACTCCTGTAAGGTAGAATTACCGAGATACCCTTATGGGGTAAAATTAC
1 A-AATACCCCTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAGAATTAC
45579248 CATTTTGCCC
Statistics
Matches: 137, Mismatches: 20, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
53 47 0.34
54 90 0.66
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (53 bp):
AAATACCCCTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAGAATTACT
Found at i:45579240 original size:27 final size:25
Alignment explanation
Indices: 45579155--45579248 Score: 68
Period size: 27 Copynumber: 3.5 Consensus size: 25
45579145 TACCCCTGCA
45579155 GGGTAGAATTACCGAAATACCCCTGTA-
1 GGGTAGAATTACCG-AATA-CCCT-TAT
45579182 GGGTAGAATTACTAC-AATACTCCTGTA-
1 GGGTAGAATTAC--CGAATAC-CCT-TAT
*
45579209 AGGTAGAATTACCGAGATACCCTTAT
1 GGGTAGAATTACCGA-ATACCCTTAT
*
45579235 GGGGTAAAATTACC
1 -GGGTAGAATTACC
45579249 ATTTTGCCCA
Statistics
Matches: 57, Mismatches: 3, Indels: 14
0.77 0.04 0.19
Matches are distributed among these distances:
25 3 0.05
26 5 0.09
27 48 0.84
29 1 0.02
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (25 bp):
GGGTAGAATTACCGAATACCCTTAT
Found at i:45579246 original size:81 final size:80
Alignment explanation
Indices: 45579088--45579248 Score: 207
Period size: 81 Copynumber: 2.0 Consensus size: 80
45579078 TAGAAATATT
* * *
45579088 GAAATACCCCTGTAGGGTAGAAATACTGAAATACCTTGTAAGGTAGAATTACTAAAATACCCCTG
1 GAAATACCCCTGTAGGGTAGAAATACTGAAATACCCTGTAAGGTAGAATTACCAAAATACCCCTA
*
45579153 CAGGGTAGAATTACC
66 CAGGGTAAAATTACC
* * * *
45579168 GAAATACCCCTGTAGGGTAGAATTACT-ACAATACTCCTGTAAGGTAGAATTACCGAGATACCCT
1 GAAATACCCCTGTAGGGTAGAAATACTGA-AATAC-CCTGTAAGGTAGAATTACCAAAATACCCC
**
45579232 TATGGGGTAAAATTACC
64 TACAGGGTAAAATTACC
45579249 ATTTTGCCCA
Statistics
Matches: 69, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
79 1 0.01
80 31 0.45
81 37 0.54
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (80 bp):
GAAATACCCCTGTAGGGTAGAAATACTGAAATACCCTGTAAGGTAGAATTACCAAAATACCCCTA
CAGGGTAAAATTACC
Found at i:45579708 original size:22 final size:22
Alignment explanation
Indices: 45579648--45579712 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
45579638 TTAAAGCCTT
* *
45579648 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
* *
45579670 CT-ACATATTGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
45579692 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
45579713 ACGTATTTGC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:45579901 original size:27 final size:27
Alignment explanation
Indices: 45579871--45579971 Score: 105
Period size: 27 Copynumber: 3.7 Consensus size: 27
45579861 ATTCTGTTAA
* * *
45579871 GTGGCTTTGCCACATTATCAGTTTCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
*
45579898 GTGGCTAAGCCACAAATATCTG-TTCTG
1 GTGGCTATGCCAC-AATATCTGTTTCTG
* *
45579925 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
* * *
45579952 GTGACTCTGTCACAATATCT
1 GTGGCTATGCCACAATATCT
45579972 AATAACTGAG
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 8 0.13
27 49 0.78
28 6 0.10
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.35
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTGTTTCTG
Found at i:45580146 original size:6 final size:6
Alignment explanation
Indices: 45580108--45580239 Score: 92
Period size: 6 Copynumber: 21.3 Consensus size: 6
45580098 TTGCATTCAC
* * *
45580108 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * *
45580158 -TTGCCTG ATACTG ATTTTG ATTCTG ATTCAG -TCACCTA ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
45580208 ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
45580240 AATGTTTCTT
Statistics
Matches: 98, Mismatches: 16, Indels: 24
0.71 0.12 0.17
Matches are distributed among these distances:
5 6 0.06
6 76 0.78
7 13 0.13
8 3 0.03
ACGTcount: A:0.19, C:0.17, G:0.16, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:45580154 original size:31 final size:31
Alignment explanation
Indices: 45580108--45580219 Score: 143
Period size: 31 Copynumber: 3.6 Consensus size: 31
45580098 TTGCATTCAC
*
45580108 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTCTGATTCTGTTACCTGATACTG
* *
45580140 ATTCTGATTTTGATTCTGTTGCCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* * * * *
45580171 ATTTTGATTCTGATTCAGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
45580202 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
45580220 ATTCTGATTC
Statistics
Matches: 70, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
31 63 0.90
32 7 0.10
ACGTcount: A:0.19, C:0.17, G:0.16, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTG
Found at i:45583153 original size:43 final size:43
Alignment explanation
Indices: 45583105--45583209 Score: 131
Period size: 43 Copynumber: 2.4 Consensus size: 43
45583095 TAACGAGATG
* *
45583105 TGATTATGTGTAAGACCATGTCTGGGACATTGGCATCGTTATT
1 TGATTATGTGTAAGACCATGTCTGGGACATTGACATCGTAATT
* * * *
45583148 TGATTACGAGTAAAACCATGTCTGGGACATTGACATTGTAATT
1 TGATTATGTGTAAGACCATGTCTGGGACATTGACATCGTAATT
*
45583191 TGATT-TCATGTAAGACCAT
1 TGATTAT-GTGTAAGACCAT
45583210 AGTTGGGCTA
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
43 51 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (43 bp):
TGATTATGTGTAAGACCATGTCTGGGACATTGACATCGTAATT
Found at i:45584113 original size:21 final size:21
Alignment explanation
Indices: 45584078--45584118 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
45584068 AAATAGTTGA
*
45584078 ATATGAAATGGCATGATTTGC
1 ATATGAAATGACATGATTTGC
* *
45584099 ATATGAATTGACATGTTTTG
1 ATATGAAATGACATGATTTG
45584119 GTTGCCTATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.07, G:0.22, T:0.39
Consensus pattern (21 bp):
ATATGAAATGACATGATTTGC
Found at i:45585339 original size:24 final size:23
Alignment explanation
Indices: 45585305--45585349 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
45585295 TCAACACATT
45585305 TCATCATCAATTCACATCATGTA
1 TCATCATCAATTCACATCATGTA
* *
45585328 TCATCTATCAATTTATATCATG
1 TCATC-ATCAATTCACATCATG
45585350 CTTACTTCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.33, C:0.22, G:0.04, T:0.40
Consensus pattern (23 bp):
TCATCATCAATTCACATCATGTA
Found at i:45590271 original size:33 final size:33
Alignment explanation
Indices: 45590234--45590311 Score: 104
Period size: 33 Copynumber: 2.4 Consensus size: 33
45590224 ATAACCCGAT
**
45590234 TATGGTCTT-TTTAGTCGATTGCCATAGTTCAGC
1 TATGGTCTTATTT-GTCGATTGCCATAGCCCAGC
* *
45590267 TATGGTCTTATTTTTCGATTTCCATAGCCCAGC
1 TATGGTCTTATTTGTCGATTGCCATAGCCCAGC
45590300 TATGGTCTTATT
1 TATGGTCTTATT
45590312 CGACAACTAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
33 37 0.93
34 3 0.08
ACGTcount: A:0.18, C:0.19, G:0.18, T:0.45
Consensus pattern (33 bp):
TATGGTCTTATTTGTCGATTGCCATAGCCCAGC
Found at i:45590808 original size:43 final size:42
Alignment explanation
Indices: 45590738--45590910 Score: 161
Period size: 43 Copynumber: 4.1 Consensus size: 42
45590728 ACATAAAGCA
* * * * *
45590738 CATACAATGCC-ATATCCCAGATATGGTCTTACATGTTATCT
1 CATACGATGCCAATGTCCCAGACATGGTCTTACACGTAATCT
* * *
45590779 CATATCGATGCCAATGTCTCAGACATGGTCTTAAACGAAATCAT
1 CATA-CGATGCCAATGTCCCAGACATGGTCTTACACGTAATC-T
* * *
45590823 -ATAACGATGCCGATGTCCCAGACATGGTCTTACACATAATCA
1 CAT-ACGATGCCAATGTCCCAGACATGGTCTTACACGTAATCT
* * * *
45590865 CAGTACAATGCTAATGTCCCGGACATGGTCTTACATGTAATCT
1 CA-TACGATGCCAATGTCCCAGACATGGTCTTACACGTAATCT
45590908 CAT
1 CAT
45590911 CTCGGTAATC
Statistics
Matches: 105, Mismatches: 21, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
41 4 0.04
42 7 0.07
43 91 0.87
44 3 0.03
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (42 bp):
CATACGATGCCAATGTCCCAGACATGGTCTTACACGTAATCT
Found at i:45595790 original size:33 final size:33
Alignment explanation
Indices: 45595748--45595814 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
45595738 CCTTTTCTGC
45595748 AACACATGCAGGATCTCATGTCATGTAAGCCAT
1 AACACATGCAGGATCTCATGTCATGTAAGCCAT
45595781 AACACATGCAGGATCTCATGTCATGTAAGCCAT
1 AACACATGCAGGATCTCATGTCATGTAAGCCAT
45595814 A
1 A
45595815 CTTTATCCGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.24
Consensus pattern (33 bp):
AACACATGCAGGATCTCATGTCATGTAAGCCAT
Found at i:45597281 original size:20 final size:20
Alignment explanation
Indices: 45597256--45597296 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
45597246 GAAATTAAGC
45597256 AATCACATATACTTCTGAGA
1 AATCACATATACTTCTGAGA
*
45597276 AATCACATATACTTTTGAGA
1 AATCACATATACTTCTGAGA
45597296 A
1 A
45597297 TAAATGTACA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.41, C:0.17, G:0.10, T:0.32
Consensus pattern (20 bp):
AATCACATATACTTCTGAGA
Found at i:45599601 original size:33 final size:33
Alignment explanation
Indices: 45599564--45599641 Score: 111
Period size: 33 Copynumber: 2.4 Consensus size: 33
45599554 ATAACCCGAT
* *
45599564 TATGGTCTTTTTAGTCGATTGCCATAGTCTAGC
1 TATGGTCTTATTAGTCGATTGCCATAGCCTAGC
* * *
45599597 TATGGCCTTATTATTCGATTTCCATAGCCTAGC
1 TATGGTCTTATTAGTCGATTGCCATAGCCTAGC
45599630 TATGGTCTTATT
1 TATGGTCTTATT
45599642 CGGCAACTTA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.19, C:0.19, G:0.18, T:0.44
Consensus pattern (33 bp):
TATGGTCTTATTAGTCGATTGCCATAGCCTAGC
Found at i:45603008 original size:43 final size:42
Alignment explanation
Indices: 45602939--45603107 Score: 169
Period size: 43 Copynumber: 4.0 Consensus size: 42
45602929 ACATAAAGCT
* * * * *
45602939 CATACAATGCC-ATATCCCAGATATGGTCTTACATGTTATCA
1 CATACGATGCCAATGTCCCAGACATGGTCTTACACGTAATCA
*
45602980 CATATCGATGCCAATGTCCCAGACATGGTCTTACACGAAATCA
1 CATA-CGATGCCAATGTCCCAGACATGGTCTTACACGTAATCA
* * * * * *
45603023 TATAACGATGCCGATGTCCTAAACATGGTCTTATACATAATCA
1 CAT-ACGATGCCAATGTCCCAGACATGGTCTTACACGTAATCA
* * *
45603066 CAGTACAACGCCAATGTCCCAGACATGGTCTTACATGTAATC
1 CA-TACGATGCCAATGTCCCAGACATGGTCTTACACGTAATC
45603108 TCATCTCAGT
Statistics
Matches: 102, Mismatches: 22, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
41 4 0.04
42 6 0.06
43 90 0.88
44 2 0.02
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (42 bp):
CATACGATGCCAATGTCCCAGACATGGTCTTACACGTAATCA
Found at i:45612242 original size:13 final size:13
Alignment explanation
Indices: 45612224--45612248 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45612214 ACAAACGATA
45612224 AAATTTTCACACG
1 AAATTTTCACACG
45612237 AAATTTTCACAC
1 AAATTTTCACAC
45612249 ATATCACATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:45629770 original size:6 final size:6
Alignment explanation
Indices: 45629752--45629833 Score: 62
Period size: 6 Copynumber: 13.3 Consensus size: 6
45629742 AAGAAACATT
*
45629752 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAG- GTGACAGA ATCAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA
* * *
45629801 ATCAGT ATCAGGTA A-CAGA ATCAAA ATTAGA AT
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
45629834 ATGAATGCAA
Statistics
Matches: 61, Mismatches: 7, Indels: 16
0.73 0.08 0.19
Matches are distributed among these distances:
5 4 0.07
6 48 0.79
7 7 0.11
8 2 0.03
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:45629796 original size:31 final size:31
Alignment explanation
Indices: 45629761--45629833 Score: 110
Period size: 31 Copynumber: 2.4 Consensus size: 31
45629751 TATCAGAACT
*
45629761 AGAATCAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
*
45629792 AGAATCAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
* *
45629823 AAAATTAGAAT
1 AGAATCAGAAT
45629834 ATGAATGCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGGTAACAGAATC
Found at i:45630000 original size:27 final size:26
Alignment explanation
Indices: 45629952--45630011 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
45629942 ACAAGGCTGC
*
45629952 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
45629979 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
45630005 CAGATAT
1 CAGATAT
45630012 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:45630098 original size:27 final size:26
Alignment explanation
Indices: 45630050--45630101 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
45630040 GCGAGACTGC
*
45630050 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
45630076 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
45630102 TTACAACGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:45630404 original size:27 final size:27
Alignment explanation
Indices: 45630370--45630594 Score: 333
Period size: 27 Copynumber: 8.3 Consensus size: 27
45630360 ACAAGGGTTC
45630370 TCAGTAATTCTACCCTACAGGGGTATT
1 TCAGTAATTCTACCCTACAGGGGTATT
*
45630397 TCAGTAATTCTACCCTATAGGGGTATT
1 TCAGTAATTCTACCCTACAGGGGTATT
* *
45630424 TTAGTAATTCTACCTTACAGGGGTATT
1 TCAGTAATTCTACCCTACAGGGGTATT
* *
45630451 TCAGTAATTCTACCTTATAGGGGTATT
1 TCAGTAATTCTACCCTACAGGGGTATT
*
45630478 TCAGTAATTCTACCCTATAGGGGTATT
1 TCAGTAATTCTACCCTACAGGGGTATT
*
45630505 TCAGTAATTCTACCCTACAGTGGTATT
1 TCAGTAATTCTACCCTACAGGGGTATT
* *
45630532 TCGGTATTTCTACCCTACAGGGGTATT
1 TCAGTAATTCTACCCTACAGGGGTATT
* * * *
45630559 TCGGTATTTCTACCCTACAAGGGCATT
1 TCAGTAATTCTACCCTACAGGGGTATT
45630586 TCAGTAATT
1 TCAGTAATT
45630595 TTGTAAATCA
Statistics
Matches: 182, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 182 1.00
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (27 bp):
TCAGTAATTCTACCCTACAGGGGTATT
Found at i:45630624 original size:81 final size:79
Alignment explanation
Indices: 45630361--45630624 Score: 271
Period size: 81 Copynumber: 3.3 Consensus size: 79
45630351 TTTTACCTCA
*
45630361 CAAGGGT-TCTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTATAGGGGTATTT
1 CAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTATAGGGGTATTT
* **
45630425 TAGTAATTCTACCTT
66 CAGTAATTCTA-AAT
* * *
45630440 ACAGGGGTATTTCAGTAATTCTACCTTATAGGGGTATTTCAGTAATTCTACCCTATAGGGGTATT
1 -CAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTATAGGGGTATT
**
45630505 TCAGTAATTCT-ACC
65 TCAGTAATTCTAAAT
* * * * * * *
45630519 CTACAGTGGTATTTCGGTATTTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGCA
1 C-A-AG-GGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTATAGGGGTA
*
45630584 TTTCAGTAATTTTGTAAAT
63 TTTCAGTAA--TTCTAAAT
***
45630603 CAAGGGTAAAACAGTAATTCTA
1 CAAGGGTATTTCAGTAATTCTA
45630625 TAGATTAAGG
Statistics
Matches: 151, Mismatches: 26, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
78 1 0.01
79 1 0.01
80 7 0.05
81 134 0.89
82 2 0.01
83 4 0.03
84 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.36
Consensus pattern (79 bp):
CAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTATAGGGGTATTT
CAGTAATTCTAAAT
Found at i:45630662 original size:27 final size:26
Alignment explanation
Indices: 45630631--45630909 Score: 243
Period size: 27 Copynumber: 10.3 Consensus size: 26
45630621 TCTATAGATT
* *
45630631 AAGGGTACTTTGGTAATTTTACAAGTC
1 AAGGGTATTTTGGTAATTTTACAA-AC
* *** * **
45630658 GAGGGTATTTCAATAAATTTACAGGTC
1 AAGGGTATTTTGGTAATTTTACA-AAC
* ** * *
45630685 GAGGGTATTTCAGTAATTTCACAAATT
1 AAGGGTATTTTGGTAATTTTACAAA-C
*
45630712 AGGGGTATTTTGGTAATTTTACAAAC
1 AAGGGTATTTTGGTAATTTTACAAAC
* *
45630738 TAGGGGTATTTTGATAATTTTACAAAC
1 -AAGGGTATTTTGGTAATTTTACAAAC
* *
45630765 TAGGGGTATTTTGGTAATTTTATAAAC
1 -AAGGGTATTTTGGTAATTTTACAAAC
* *
45630792 AAAAGGTATTTTAGTAATTTTACAAACC
1 -AAGGGTATTTTGGTAATTTTACAAA-C
*
45630820 AAGGGTATTTTGGTAATTTTATAAACC
1 AAGGGTATTTTGGTAATTTTACAAA-C
45630847 AAGGGTATTTTGGTAATTTTACAAACC
1 AAGGGTATTTTGGTAATTTTACAAA-C
* * *
45630874 AGGGGTATTTTGGTGATTTTATAAACC
1 AAGGGTATTTTGGTAATTTTACAAA-C
45630901 AAGGGTATT
1 AAGGGTATT
45630910 CTAAACCAGG
Statistics
Matches: 213, Mismatches: 35, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
27 212 1.00
28 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (26 bp):
AAGGGTATTTTGGTAATTTTACAAAC
Found at i:45630733 original size:54 final size:53
Alignment explanation
Indices: 45630686--45630989 Score: 317
Period size: 54 Copynumber: 5.8 Consensus size: 53
45630676 TTACAGGTCG
* * **
45630686 AGGGTATTTCAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAACTA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAAC-A
* * *
45630740 GGGGTATTTT-GATAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACAA
1 AGGGTATTTTAG-TAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAAC-A
* * *
45630794 AAGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAACCA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAA-CA
* * *
45630848 AGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAA-CA
* * *
45630902 A-GG-------GT-ATTCT--AAACCAGGGGTATTTTGGTGATTTTATAAACCA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAA-CA
*
45630945 AGGGTATTCTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
45630990 GGTAAACTAA
Statistics
Matches: 219, Mismatches: 17, Indels: 28
0.83 0.06 0.11
Matches are distributed among these distances:
43 34 0.16
44 2 0.01
45 4 0.02
46 2 0.01
51 2 0.01
52 4 0.02
53 3 0.01
54 166 0.76
55 2 0.01
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (53 bp):
AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACA
Found at i:45630760 original size:81 final size:80
Alignment explanation
Indices: 45630630--45630989 Score: 290
Period size: 81 Copynumber: 4.6 Consensus size: 80
45630620 TTCTATAGAT
* ** * ** * ** *
45630630 TAAGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAATAAATTTACAGGTCGAGGGTATTT
1 TAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGATAATTTTACA-AACAAGGGTATTT
** * *
45630695 CAGTAATTTCACAAAT
65 TGGTAATTTTACAAAC
* * * *
45630711 TAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACTAGGGGTATTT
1 TAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGATAATTTTACAAAC-AAGGGTATTT
*
45630776 TGGTAATTTTATAAAC
65 TGGTAATTTTACAAAC
* * * * *
45630792 AAAAGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAACCAAGGGTATTT
1 TAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGATAATTTTACAAA-CAAGGGTATTT
45630857 TGGTAATTTTACAAAC
65 TGGTAATTTTACAAAC
* * * * * *
45630873 CAGGGGTATTTTGGTGATTTTATAAACCAAGGGTA--TT-CTAA----AC---CAGGGGTATTTT
1 TAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGATAATTTTACAAACAAGGGTATTTT
* *
45630928 GGTGATTTTATAAAC
66 GGTAATTTTACAAAC
* * * * *
45630943 CAAGGGTATTCTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
1 TAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGATAATTT
45630990 GGTAAACTAA
Statistics
Matches: 224, Mismatches: 47, Indels: 21
0.77 0.16 0.07
Matches are distributed among these distances:
70 53 0.24
72 2 0.01
73 3 0.01
74 1 0.00
78 3 0.01
79 2 0.01
80 1 0.00
81 158 0.71
82 1 0.00
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (80 bp):
TAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGATAATTTTACAAACAAGGGTATTTT
GGTAATTTTACAAAC
Found at i:45630916 original size:16 final size:16
Alignment explanation
Indices: 45630895--45630925 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
45630885 GGTGATTTTA
45630895 TAAACCAAGGGTATTC
1 TAAACCAAGGGTATTC
*
45630911 TAAACCAGGGGTATT
1 TAAACCAAGGGTATT
45630926 TTGGTGATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.26
Consensus pattern (16 bp):
TAAACCAAGGGTATTC
Found at i:45630917 original size:43 final size:43
Alignment explanation
Indices: 45630869--45630955 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
45630859 GTAATTTTAC
45630869 AAACCAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTCT
1 AAACCAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTCT
45630912 AAACCAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTCT
1 AAACCAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTCT
45630955 A
1 A
45630956 GTAATTTTAC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.31, C:0.11, G:0.23, T:0.34
Consensus pattern (43 bp):
AAACCAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTCT
Found at i:45630925 original size:70 final size:70
Alignment explanation
Indices: 45630841--45630979 Score: 197
Period size: 70 Copynumber: 2.0 Consensus size: 70
45630831 GGTAATTTTA
* * * * *
45630841 TAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAAGGG
1 TAAACCAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTCTAGTAATTTTACAAACCAAGGG
45630906 TATTC
66 TATTC
* * * *
45630911 TAAACCAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTCTAGTAATTTTACAAACCAGGGG
1 TAAACCAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTCTAGTAATTTTACAAACCAAGGG
45630976 TATT
66 TATT
45630980 TTGGTAATTT
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
70 60 1.00
ACGTcount: A:0.32, C:0.12, G:0.22, T:0.35
Consensus pattern (70 bp):
TAAACCAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTCTAGTAATTTTACAAACCAAGGG
TATTC
Found at i:45630939 original size:97 final size:96
Alignment explanation
Indices: 45630815--45631015 Score: 305
Period size: 97 Copynumber: 2.1 Consensus size: 96
45630805 GTAATTTTAC
* * *
45630815 AAACCAAGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGT
1 AAACCAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTCTAGTAATTTTACAAACCAGGGGT
* * *
45630880 ATTTTGGTGATTTTATAAACCAAGGGTATTCT
66 ATTTTGGTAATTTGATAAACCAA-AGTATTCT
*
45630912 AAACCAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTCTAGTAATTTTACAAACCAGGGGT
1 AAACCAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTCTAGTAATTTTACAAACCAGGGGT
* *
45630977 ATTTTGGTAATTTGGTAAACTAAAGTATTCT
66 ATTTTGGTAATTTGATAAACCAAAGTATTCT
45631008 AAA-CAGGG
1 AAACCAGGG
45631016 ATAACAATAC
Statistics
Matches: 95, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
95 5 0.05
96 10 0.11
97 80 0.84
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.35
Consensus pattern (96 bp):
AAACCAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTCTAGTAATTTTACAAACCAGGGGT
ATTTTGGTAATTTGATAAACCAAAGTATTCT
Found at i:45630996 original size:27 final size:27
Alignment explanation
Indices: 45630911--45630989 Score: 113
Period size: 27 Copynumber: 2.9 Consensus size: 27
45630901 AAGGGTATTC
*
45630911 TAAACCAGGGGTATTTTGGTGATTTTA
1 TAAACCAGGGGTATTTTGGTAATTTTA
* * *
45630938 TAAACCAAGGGTATTCTAGTAATTTTA
1 TAAACCAGGGGTATTTTGGTAATTTTA
*
45630965 CAAACCAGGGGTATTTTGGTAATTT
1 TAAACCAGGGGTATTTTGGTAATTT
45630990 GGTAAACTAA
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.38
Consensus pattern (27 bp):
TAAACCAGGGGTATTTTGGTAATTTTA
Found at i:45640274 original size:53 final size:54
Alignment explanation
Indices: 45640206--45640412 Score: 193
Period size: 53 Copynumber: 3.8 Consensus size: 54
45640196 TTCCTTTTTA
* * * *
45640206 AACTTACCATTGCCATGTCTTGCCATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * *
45640259 AACTCACCATTGCCATGCCTTGACATGGTCTTATATGGGATCTTTGCCTTATCG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * *
45640313 TAGTTTATCAATGCCAT-CTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTTACCAATGCCATGC-CTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * *
45640368 AACTTACCAATGTCATGCCTTGGCATGTTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
45640413 AAACCCTAAT
Statistics
Matches: 121, Mismatches: 29, Indels: 7
0.77 0.18 0.04
Matches are distributed among these distances:
53 45 0.37
54 36 0.30
55 40 0.33
ACGTcount: A:0.20, C:0.25, G:0.17, T:0.39
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:45652527 original size:27 final size:26
Alignment explanation
Indices: 45652471--45652527 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
45652461 CAACCTTAAC
* *
45652471 CCTAGGGGTATATCAGTAATTTTACT
1 CCTAGGGGTAAATCAGTAATTTTACA
* *
45652497 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTACA
45652524 CCTA
1 CCTA
45652528 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTACA
Found at i:45654514 original size:3 final size:3
Alignment explanation
Indices: 45654506--45654536 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
45654496 TTTTCCTATC
*
45654506 TAA TAA TAA TAA TTA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
45654537 TTTATAAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (3 bp):
TAA
Found at i:45654663 original size:19 final size:18
Alignment explanation
Indices: 45654626--45654669 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
45654616 ATACATACAG
45654626 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
45654643 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
45654662 TACTAATT
1 TAATAATT
45654670 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:45660291 original size:38 final size:39
Alignment explanation
Indices: 45660211--45660463 Score: 385
Period size: 39 Copynumber: 6.6 Consensus size: 39
45660201 TATTCGGATG
45660211 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCC-GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
45660251 ATATCCGGCTAAGTCCCGAAGGCATTT-TGCTAGTGACT
1 ATATCCGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
45660289 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCC-GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
45660329 ATATCCGGCTAAGTCCCGAAGGCATTT-TGCTAGTGACT
1 ATATCCGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
45660367 A-ATCGGGCTAAGTCCC-AAGG-ATTTGTGCTAGTGACT
1 ATATCCGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
45660403 ATATCCGGGCTAAG-ACCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCC-GGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
45660442 ATATCCGGCTAAATCCCGAAGG
1 ATATCCGGCTAAGTCCCGAAGG
45660464 TACTTGGGTT
Statistics
Matches: 198, Mismatches: 6, Indels: 19
0.89 0.03 0.09
Matches are distributed among these distances:
35 4 0.02
36 16 0.08
37 19 0.10
38 46 0.23
39 88 0.44
40 25 0.13
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (39 bp):
ATATCCGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:45668184 original size:39 final size:40
Alignment explanation
Indices: 45668114--45668358 Score: 324
Period size: 39 Copynumber: 6.2 Consensus size: 40
45668104 TATTCGGATG
45668114 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
*
45668154 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
* * *
45668193 ACAT-C-GGCGAAGTCCCGAAGGTATTTGTG-GAGTAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-G--ACT
*
45668233 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
* *
45668273 ACATCCGGGCT-AGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
* *
45668312 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCGACTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGA-GTGACT
45668351 ATATCCGG
1 ATATCCGG
45668359 TAAATCCGAA
Statistics
Matches: 182, Mismatches: 14, Indels: 19
0.85 0.07 0.09
Matches are distributed among these distances:
37 10 0.05
38 16 0.09
39 82 0.45
40 47 0.26
41 1 0.01
42 23 0.13
43 3 0.02
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
Found at i:45668316 original size:79 final size:79
Alignment explanation
Indices: 45668116--45668342 Score: 336
Period size: 79 Copynumber: 2.9 Consensus size: 79
45668106 TTCGGATGAT
*
45668116 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGT-CCGAAGGCATT
1 ATCCGGGCT-AGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATT
45668180 TGTGCTAGTGACTAC
65 TGTGCTAGTGACTAC
* * * *
45668195 AT-C-GGCGAAGTCCCGAAGGTATTTGTGGAGTAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATCCGGGC-TAGTCCCGAAGGCATTTGT-G-CTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
45668258 TTTGTGCTAGTGACTAC
63 TTTGTGCTAGTGACTAC
*
45668275 ATCCGGGCTAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGC-TTT
1 ATCCGGGCTAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTT
45668339 GTGC
66 GTGC
45668343 GACTTGCTAT
Statistics
Matches: 132, Mismatches: 10, Indels: 13
0.85 0.06 0.08
Matches are distributed among these distances:
77 20 0.15
78 9 0.07
79 53 0.40
80 29 0.22
81 18 0.14
82 3 0.02
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.26
Consensus pattern (79 bp):
ATCCGGGCTAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTT
GTGCTAGTGACTAC
Found at i:45668389 original size:119 final size:119
Alignment explanation
Indices: 45668114--45668370 Score: 330
Period size: 119 Copynumber: 2.2 Consensus size: 119
45668104 TATTCGGATG
* * *
45668114 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCCGAAGGCAT
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCAAGTGACTACATCCGGGCTAAGTCCGAAGGCAT
* *
45668179 TTGTGCTAGTGACTACATCGGCGAAGTCCCGAAGGTATTTGTGGAGTAGTTACT
66 TTGTGCTAGTGACTACATCGGCGAAGACCCGAAGGTATTTGTGGAGTACTTACT
* *
45668233 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTACATCCGGGCT-AGTCCCGAAGGCA
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCAAGTGACTACATCCGGGCTAAGT-CCGAAGGCA
* * * * *
45668297 TTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGG-CTTTGT-GCG-ACTTGCT
65 TTTGTGCTAGTGACTACAT-C-GGCGAAGACCCGAAGGTATTTGTGGAGTACTTACT
45668351 ATATCC-GG-TAAAT-CCGAAGG
1 ATATCCGGGCTAAATCCCGAAGG
45668371 TACTTGGGTT
Statistics
Matches: 125, Mismatches: 10, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
115 7 0.06
116 4 0.03
117 2 0.02
118 14 0.11
119 78 0.62
120 6 0.05
121 14 0.11
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (119 bp):
ATATCCGGGCTAAATCCCGAAGGCATTTGTGCAAGTGACTACATCCGGGCTAAGTCCGAAGGCAT
TTGTGCTAGTGACTACATCGGCGAAGACCCGAAGGTATTTGTGGAGTACTTACT
Found at i:45676148 original size:40 final size:40
Alignment explanation
Indices: 45676088--45676349 Score: 368
Period size: 40 Copynumber: 6.6 Consensus size: 40
45676078 TATTCGGATG
* *
45676088 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
*
45676128 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
* * * *
45676168 ACATCC-GGCGAAGTCCCGAAGGCATTTGTGAGTAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTGACT
*
45676208 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
* *
45676248 ACATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
* *
45676288 ATATCCGGGCTAAGACCCGAAAGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACT
*
45676328 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
45676350 TACTTGGGTT
Statistics
Matches: 198, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 36 0.18
40 137 0.69
41 25 0.13
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
Found at i:45680623 original size:28 final size:28
Alignment explanation
Indices: 45680560--45680738 Score: 279
Period size: 28 Copynumber: 6.4 Consensus size: 28
45680550 ATATTAAGTC
*
45680560 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
45680587 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
45680615 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
45680643 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
45680671 CGCAAACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
45680699 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
45680728 CGCACACTTAG
1 CGCACACTTAG
45680739 CGCCAATCTC
Statistics
Matches: 141, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
27 22 0.16
28 103 0.73
29 16 0.11
ACGTcount: A:0.35, C:0.27, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:45685651 original size:15 final size:15
Alignment explanation
Indices: 45685631--45685660 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
45685621 AATTGTATGT
45685631 TTGTTTGTGATGTGA
1 TTGTTTGTGATGTGA
45685646 TTGTTTGTGATGTGA
1 TTGTTTGTGATGTGA
45685661 ATTCGATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.00, G:0.33, T:0.53
Consensus pattern (15 bp):
TTGTTTGTGATGTGA
Found at i:45696012 original size:47 final size:47
Alignment explanation
Indices: 45695941--45696298 Score: 590
Period size: 47 Copynumber: 7.6 Consensus size: 47
45695931 CCCTTCAGGA
* * * * * *
45695941 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
45695988 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45696035 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
45696082 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45696129 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
45696176 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45696225 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45696272 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
45696299 TATTCAAATA
Statistics
Matches: 295, Mismatches: 14, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
47 250 0.85
49 45 0.15
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:45696019 original size:25 final size:25
Alignment explanation
Indices: 45695991--45696069 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
45695981 ACTCGGCCCT
45695991 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * * *
45696016 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
45696038 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
45696063 ATCACAT
1 ATCACAT
45696070 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:45696262 original size:190 final size:188
Alignment explanation
Indices: 45695941--45696298 Score: 635
Period size: 190 Copynumber: 1.9 Consensus size: 188
45695931 CCCTTCAGGA
* * * *
45695941 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
45696006 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATC
45696071 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
131 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * *
45696129 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCAC--ATATATAC
45696194 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
45696259 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
129 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
45696299 TATTCAAATA
Statistics
Matches: 161, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
188 48 0.30
190 113 0.70
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (188 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:45699371 original size:20 final size:20
Alignment explanation
Indices: 45699346--45699386 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
45699336 CTCTTTAAGT
45699346 TTTTATT-CTTTAATTTGATA
1 TTTTATTACTTTAATTT-ATA
*
45699366 TTTTATTATTTTAATTTATA
1 TTTTATTACTTTAATTTATA
45699386 T
1 T
45699387 CTGCTAGCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.68
Consensus pattern (20 bp):
TTTTATTACTTTAATTTATA
Found at i:45706482 original size:26 final size:26
Alignment explanation
Indices: 45706425--45706476 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
45706415 CAAATTAATT
* *
45706425 AAATGATTGTTCTGCCCTATGAGGTA
1 AAATGATTGTTATGCCCTATGAGATA
45706451 AAATGATTGTTATGCCCTTATGAGAT
1 AAATGATTGTTATGCCC-TATGAGAT
45706477 GTATGACTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 16 0.70
27 7 0.30
ACGTcount: A:0.29, C:0.13, G:0.21, T:0.37
Consensus pattern (26 bp):
AAATGATTGTTATGCCCTATGAGATA
Found at i:45719070 original size:30 final size:30
Alignment explanation
Indices: 45719024--45719083 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
45719014 TTCCCGATCC
* *
45719024 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGAAAAAATGTAATTATGCAAAAGTT
* *
45719054 TAGGGGAAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGAAAAAATGTAATTATGCAAAAGTT
45719084 CGTATTAAAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.40, C:0.07, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGAAAAAATGTAATTATGCAAAAGTT
Found at i:45723886 original size:15 final size:17
Alignment explanation
Indices: 45723849--45723889 Score: 52
Period size: 15 Copynumber: 2.6 Consensus size: 17
45723839 TTTTTGGATT
*
45723849 GATTTGAATGAATTTAA
1 GATTTGAATGAAGTTAA
45723866 GA-TTGAAT-AAGTTAA
1 GATTTGAATGAAGTTAA
45723881 -ATTTGAATG
1 GATTTGAATG
45723890 TGTTTAGATC
Statistics
Matches: 21, Mismatches: 1, Indels: 5
0.78 0.04 0.19
Matches are distributed among these distances:
14 1 0.05
15 12 0.57
16 6 0.29
17 2 0.10
ACGTcount: A:0.41, C:0.00, G:0.20, T:0.39
Consensus pattern (17 bp):
GATTTGAATGAAGTTAA
Found at i:45724305 original size:43 final size:42
Alignment explanation
Indices: 45724219--45724327 Score: 112
Period size: 43 Copynumber: 2.5 Consensus size: 42
45724209 CATTGACTTA
** * *
45724219 TGATTTACGTGTAAGACCATGTCTGGGACATCGACGTCGTATT
1 TGATTT-CGTGTAAGACCATGTCTAAGACATAGACATCGTATT
*
45724262 TGATTTCGTGTAAGACCCTGTCTAAGACAGTAG-CATCGATATT
1 TGATTTCGTGTAAGACCATGTCTAAGACA-TAGACATCG-TATT
* * *
45724305 TGATTACATGTAAAACCATGTCT
1 TGATTTCGTGTAAGACCATGTCT
45724328 GGGACGTTGG
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
42 24 0.44
43 31 0.56
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCATGTCTAAGACATAGACATCGTATT
Found at i:45726703 original size:308 final size:308
Alignment explanation
Indices: 45726133--45727346 Score: 1662
Period size: 308 Copynumber: 3.9 Consensus size: 308
45726123 TGAATGGTGG
* * *
45726133 ACACATGTCAAGGAGAAA-TCGAGAAAGCATGATGAAAAGCCAAAGCGACACCATGATGACCACG
1 ACACATGTCAAGGAGAAACT-GAGAAAGCACGATGAAGAGCCAAAGCGACACCATGATGAGCACG
* * *
45726197 TGAT-AAGAAGAAACCAATTTAAGGTTGGAGACAAAGTATTGCTGGAAAAAACGGATCCATAAAT
65 TGATGAA-AACAAACCAATTTAAGGTTGGAGACAAAGTACTGCTGGAAAAAACGGATCCACAAAT
* * * *
45726261 CTCCCCTTCAAAGCTCGAGTCAAACGGATTAAACCTATTTATGGTACTGAACGTCTTCCGCTACA
129 CTCCCCTTCAGAGCTCGAGTCAAACGGATCAAACCTATTTATGGTACTGAACGTCTTCCCCTACG
* **
45726326 ATACAGTTGAGGTAACTCATTCTAAATTCGGCACATTTAAGGTAAACAATGGTCGAA-TAGGACA
194 ATACAGTTGAGGTAACTCATTCTAAATTCGACACATTTAAGGTAAACAATACTCGAATTA-GACA
*
45726390 TTATCTTGGTAGAATAATTGATAGCGAGAAAGAAGAGCCATGGCTTTGCAA
258 TTATCTTGGTAGAATAATTGATAGCGAGAAAGAAGAGCCTTGGCTTTGCAA
*** * ** * *
45726441 ACTGGTGTCAAGGAGAAACTGAGAAAGCACAATGAAGAGCCAAAGCGATGCCATGATGAGTAGGT
1 ACACATGTCAAGGAGAAACTGAGAAAGCACGATGAAGAGCCAAAGCGACACCATGATGAGCACGT
* * *
45726506 GATGAAAACAAACCAATTTAAGGTTGGAGACAAAGTACTGCTAGAAGAAACAGATCCACAAATCT
66 GATGAAAACAAACCAATTTAAGGTTGGAGACAAAGTACTGCTGGAAAAAACGGATCCACAAATCT
** * * ** *
45726571 CCCCTTTGGAGCTCGAGTCAAACAGATCAAACCTATTTATGGTATTGAACGTCTTTTCCTATGAT
131 CCCCTTCAGAGCTCGAGTCAAACGGATCAAACCTATTTATGGTACTGAACGTCTTCCCCTACGAT
* * * * * **
45726636 ACAGTTGATGTAACTCATTATGAATTCGACACATTTAAGGTACACAATACTTGAATTAGTTATTA
196 ACAGTTGAGGTAACTCATTCTAAATTCGACACATTTAAGGTAAACAATACTCGAATTAGACATTA
* * * *
45726701 TCTTGGTACAATAATTGATAGTGCGAAA-AAGGAGCCTTGGCTTCGCAA
261 TCTTGGTAGAATAATTGATAGCGAGAAAGAA-GAGCCTTGGCTTTGCAA
* * * *
45726749 ACACATGTCAAGGAGAAACAGATAAAGCATGATGAAGAGCCAAAGCGACGCCATGATGAGCACGT
1 ACACATGTCAAGGAGAAACTGAGAAAGCACGATGAAGAGCCAAAGCGACACCATGATGAGCACGT
* *
45726814 GATGAAAACAAAGCAATTTAAGGTTGGAGACAAAGTACTGCTGGAAAAAATGGATCCACAAATCT
66 GATGAAAACAAACCAATTTAAGGTTGGAGACAAAGTACTGCTGGAAAAAACGGATCCACAAATCT
* * * * *
45726879 CACCTTCGGAGCTCGAGTCAAACGTATCAAACCTTTTTATGGTACTAAACGTCTTCCCCTACGAT
131 CCCCTTCAGAGCTCGAGTCAAACGGATCAAACCTATTTATGGTACTGAACGTCTTCCCCTACGAT
* * * ***
45726944 ACAGTTGACGTAAATCATTCTAAATTTGGGGCATTTAAGGTAAACAATACTCGAATTAGACATTA
196 ACAGTTGAGGTAACTCATTCTAAATTCGACACATTTAAGGTAAACAATACTCGAATTAGACATTA
45727009 TCTTGGTAGAATAATTGATAGCGAGAAAGAAGAGCCTTGGCTTTGCAA
261 TCTTGGTAGAATAATTGATAGCGAGAAAGAAGAGCCTTGGCTTTGCAA
* * *
45727057 ACACATGTCAAGGAGAAACTGAGAAAGCACGATAAAGAGCCAAAGCGACACCAAGATGAGCAGGT
1 ACACATGTCAAGGAGAAACTGAGAAAGCACGATGAAGAGCCAAAGCGACACCATGATGAGCACGT
* * * * **
45727122 GATGAGAACAAACCAATTTAAAGTTGGAGACAAAGTACTGCTGGGAAAAATGGATCCATGAATCT
66 GATGAAAACAAACCAATTTAAGGTTGGAGACAAAGTACTGCTGGAAAAAACGGATCCACAAATCT
45727187 CCCCTTCAGAGCTCGAGTCAAACGGATCAAACCTATTTATGGTACTGAACGTCTTCCCCTACGAT
131 CCCCTTCAGAGCTCGAGTCAAACGGATCAAACCTATTTATGGTACTGAACGTCTTCCCCTACGAT
** * * * * *
45727252 ACAGTTGAGGTAACTCATTCTGTATTTGACACATTTAAAGTAAACAATACTCAAATTATACCTTA
196 ACAGTTGAGGTAACTCATTCTAAATTCGACACATTTAAGGTAAACAATACTCGAATTAGACATTA
* *
45727317 CCTTGGTAGAATAATTGATAGAGAGAAAGA
261 TCTTGGTAGAATAATTGATAGCGAGAAAGA
45727347 GAAGCCTCAG
Statistics
Matches: 786, Mismatches: 115, Indels: 10
0.86 0.13 0.01
Matches are distributed among these distances:
307 2 0.00
308 777 0.99
309 7 0.01
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.24
Consensus pattern (308 bp):
ACACATGTCAAGGAGAAACTGAGAAAGCACGATGAAGAGCCAAAGCGACACCATGATGAGCACGT
GATGAAAACAAACCAATTTAAGGTTGGAGACAAAGTACTGCTGGAAAAAACGGATCCACAAATCT
CCCCTTCAGAGCTCGAGTCAAACGGATCAAACCTATTTATGGTACTGAACGTCTTCCCCTACGAT
ACAGTTGAGGTAACTCATTCTAAATTCGACACATTTAAGGTAAACAATACTCGAATTAGACATTA
TCTTGGTAGAATAATTGATAGCGAGAAAGAAGAGCCTTGGCTTTGCAA
Found at i:45728607 original size:9 final size:8
Alignment explanation
Indices: 45728521--45728603 Score: 67
Period size: 8 Copynumber: 9.8 Consensus size: 8
45728511 TTTTTAATTC
45728521 TTTATTAT
1 TTTATTAT
45728529 TTTATTAT
1 TTTATTAT
*
45728537 TTTATCAT
1 TTTATTAT
45728545 TTTATTAT
1 TTTATTAT
* *
45728553 TTTCTTTAA
1 TTT-ATTAT
*
45728562 TCTATTTAT
1 TTTA-TTAT
*
45728571 TTTACTAT
1 TTTATTAT
*
45728579 TCTAATTATT
1 T-TTATTA-T
45728589 TTTATTTAT
1 TTTA-TTAT
45728598 TTTATT
1 TTTATT
45728604 TATTCTCTCT
Statistics
Matches: 58, Mismatches: 12, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
8 31 0.53
9 22 0.38
10 5 0.09
ACGTcount: A:0.24, C:0.06, G:0.00, T:0.70
Consensus pattern (8 bp):
TTTATTAT
Found at i:45728780 original size:17 final size:17
Alignment explanation
Indices: 45728760--45728826 Score: 63
Period size: 17 Copynumber: 4.1 Consensus size: 17
45728750 TTTCTGTTTC
*
45728760 TATTTTTTTTCTTTTAT
1 TATTTTGTTTCTTTTAT
45728777 TATTTT-TATTC--TTAT
1 TATTTTGT-TTCTTTTAT
45728792 TA-TTTGTTTCTTATTAT
1 TATTTTGTTTCTT-TTAT
45728809 TATTCTTGTTT-TTTTAT
1 TATT-TTGTTTCTTTTAT
45728826 T
1 T
45728827 CTTACTGCTT
Statistics
Matches: 43, Mismatches: 0, Indels: 14
0.75 0.00 0.25
Matches are distributed among these distances:
14 6 0.14
15 7 0.16
16 1 0.02
17 20 0.47
18 3 0.07
19 6 0.14
ACGTcount: A:0.15, C:0.06, G:0.03, T:0.76
Consensus pattern (17 bp):
TATTTTGTTTCTTTTAT
Found at i:45728782 original size:14 final size:15
Alignment explanation
Indices: 45728760--45728812 Score: 54
Period size: 14 Copynumber: 3.5 Consensus size: 15
45728750 TTTCTGTTTC
*
45728760 TATTTTTTTTCTT-T
1 TATTATTTTTCTTAT
* *
45728774 TATTATTTTTATTCT
1 TATTATTTTTCTTAT
45728789 TATTATTTGTTTCTTAT
1 TATTA-TT-TTTCTTAT
45728806 TATTATT
1 TATTATT
45728813 CTTGTTTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
14 11 0.34
15 6 0.19
16 4 0.12
17 11 0.34
ACGTcount: A:0.17, C:0.06, G:0.02, T:0.75
Consensus pattern (15 bp):
TATTATTTTTCTTAT
Found at i:45728826 original size:20 final size:20
Alignment explanation
Indices: 45728779--45728822 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
45728769 TCTTTTATTA
*
45728779 TTTTTATTCTTATTATTTGT
1 TTTTTATTATTATTATTTGT
* *
45728799 TTCTTATTATTATT-CTTGT
1 TTTTTATTATTATTATTTGT
45728818 TTTTT
1 TTTTT
45728823 TATTCTTACT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.14, C:0.07, G:0.05, T:0.75
Consensus pattern (20 bp):
TTTTTATTATTATTATTTGT
Found at i:45731439 original size:39 final size:39
Alignment explanation
Indices: 45731385--45731626 Score: 322
Period size: 39 Copynumber: 6.2 Consensus size: 39
45731375 GAAATGTGTA
* *
45731385 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGG
1 TGGAAATATATCCGGGCCAAAGACCCGCAGGCTTTGTGC
* *
45731424 TGGAAATATATCCGGGCCAAAGACCCACAGGCTTCGTGC
1 TGGAAATATATCCGGGCCAAAGACCCGCAGGCTTTGTGC
* * *
45731463 TGGAAATGTATCCGGGCTAAAGGCCCGCAGGCTTTGTGC
1 TGGAAATATATCCGGGCCAAAGACCCGCAGGCTTTGTGC
* * * * * *
45731502 TGGAAATATATACGCGCCAAAGGCCCACAGGCTTCGTAC
1 TGGAAATATATCCGGGCCAAAGACCCGCAGGCTTTGTGC
*
45731541 TGGAAATGTATCCGGGCCAAAGACCCGCAGGCTTTGTGC
1 TGGAAATATATCCGGGCCAAAGACCCGCAGGCTTTGTGC
* * *
45731580 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGC
1 TGGAAATATATCCGGGCCAAAGACCCGCAGGCTTTGTGC
*
45731619 TGGTAATA
1 TGGAAATA
45731627 AAATTTCAGG
Statistics
Matches: 176, Mismatches: 27, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 176 1.00
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (39 bp):
TGGAAATATATCCGGGCCAAAGACCCGCAGGCTTTGTGC
Found at i:45731521 original size:78 final size:78
Alignment explanation
Indices: 45731385--45731621 Score: 357
Period size: 78 Copynumber: 3.0 Consensus size: 78
45731375 GAAATGTGTA
* *
45731385 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGGTGGAAATATATCCGGGCCAAAGACCC
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTTGTGCTGGAAATATATCCGGGCCAAAGACCC
45731450 ACAGGCTTCGTGC
66 ACAGGCTTCGTGC
* * * *
45731463 TGGAAATGTATCCGGGCTAAAGGCCCGCAGGCTTTGTGCTGGAAATATATACGCGCCAAAGGCCC
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTTGTGCTGGAAATATATCCGGGCCAAAGACCC
*
45731528 ACAGGCTTCGTAC
66 ACAGGCTTCGTGC
* * * *
45731541 TGGAAATGTATCCGGGCCAAAGACCCGCAGGCTTTGTGCTGGAAATGTATCCGGGCTAAAGTCCC
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTTGTGCTGGAAATATATCCGGGCCAAAGACCC
* *
45731606 GCAGGCTTTGTGC
66 ACAGGCTTCGTGC
45731619 TGG
1 TGG
45731622 TAATAAAATT
Statistics
Matches: 142, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
78 142 1.00
ACGTcount: A:0.24, C:0.24, G:0.30, T:0.22
Consensus pattern (78 bp):
TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTTGTGCTGGAAATATATCCGGGCCAAAGACCC
ACAGGCTTCGTGC
Found at i:45731591 original size:117 final size:117
Alignment explanation
Indices: 45731385--45731626 Score: 367
Period size: 117 Copynumber: 2.1 Consensus size: 117
45731375 GAAATGTGTA
* * * * * **
45731385 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGGTGGAAATATATCCGGGCCAAAGACCC
1 TGGAAATATATACGCGCCAAAGACCCACAGGCTTCGTACTGGAAATATATCCGGGCCAAAGACCC
45731450 ACAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGGCCCGCAGGCTTTGTGC
66 ACAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGGCCCGCAGGCTTTGTGC
* *
45731502 TGGAAATATATACGCGCCAAAGGCCCACAGGCTTCGTACTGGAAATGTATCCGGGCCAAAGACCC
1 TGGAAATATATACGCGCCAAAGACCCACAGGCTTCGTACTGGAAATATATCCGGGCCAAAGACCC
* * *
45731567 GCAGGCTTTGTGCTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGC
66 ACAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGGCCCGCAGGCTTTGTGC
*
45731619 TGGTAATA
1 TGGAAATA
45731627 AAATTTCAGG
Statistics
Matches: 112, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
117 112 1.00
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (117 bp):
TGGAAATATATACGCGCCAAAGACCCACAGGCTTCGTACTGGAAATATATCCGGGCCAAAGACCC
ACAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGGCCCGCAGGCTTTGTGC
Found at i:45737426 original size:39 final size:39
Alignment explanation
Indices: 45737372--45737602 Score: 336
Period size: 39 Copynumber: 5.9 Consensus size: 39
45737362 GAAATGTGTA
*
45737372 TGGAAATATATCCGGGCTAAAGACCCGTAGGCTTTGTGC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
* *
45737411 TGGAAATATATCCGGGCCAAAGACCCGCAGGCTTTGTGT
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
* * *
45737450 TGGAAATGTATCCGGGCTAAAGGCCCGTAGGCTTTGTGC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
* * * *
45737489 TGGAAATATATCCAGGCCAAAGGCCCGCAGGCTTCGTGC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
*
45737528 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTTGTGC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
* * *
45737567 TGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTTG
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTG
45737603 GGTGCTGGTA
Statistics
Matches: 172, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 172 1.00
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.24
Consensus pattern (39 bp):
TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
Found at i:45737578 original size:117 final size:117
Alignment explanation
Indices: 45737372--45737602 Score: 381
Period size: 117 Copynumber: 2.0 Consensus size: 117
45737362 GAAATGTGTA
* * * *
45737372 TGGAAATATATCCGGGCTAAAGACCCGTAGGCTTTGTGCTGGAAATATATCCGGGCCAAAGACCC
1 TGGAAATATATCCAGGCCAAAGACCCGCAGGCTTCGTGCTGGAAATATATCCGGGCCAAAGACCC
*
45737437 GCAGGCTTTGTGTTGGAAATGTATCCGGGCTAAAGGCCCGTAGGCTTTGTGC
66 GCAGGCTTTGTGCTGGAAATGTATCCGGGCTAAAGGCCCGTAGGCTTTGTGC
* * *
45737489 TGGAAATATATCCAGGCCAAAGGCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGACCC
1 TGGAAATATATCCAGGCCAAAGACCCGCAGGCTTCGTGCTGGAAATATATCCGGGCCAAAGACCC
*
45737554 GCAGGCTTTGTGCTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTTG
66 GCAGGCTTTGTGCTGGAAATGTATCCGGGCTAAAGGCCCGTAGGCTTTG
45737603 GGTGCTGGTA
Statistics
Matches: 105, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
117 105 1.00
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.24
Consensus pattern (117 bp):
TGGAAATATATCCAGGCCAAAGACCCGCAGGCTTCGTGCTGGAAATATATCCGGGCCAAAGACCC
GCAGGCTTTGTGCTGGAAATGTATCCGGGCTAAAGGCCCGTAGGCTTTGTGC
Found at i:45742272 original size:40 final size:40
Alignment explanation
Indices: 45742143--45742313 Score: 138
Period size: 40 Copynumber: 4.2 Consensus size: 40
45742133 AGCTATATTT
* *
45742143 GGCACTTAGTGTGTG-TATGAAGATAGCTTC-AGCTATATAA
1 GGCACTTAGTGTGCGAAATG-AGATAGCTTCGA-CTATATAA
* * * *
45742183 AGCACTTAGTGTGCGAATTG-GAATAGTTTCGACTATATAT
1 GGCACTTAGTGTGCGAAATGAG-ATAGCTTCGACTATATAA
*
45742223 GGCAATTAGTGTGCGAAACTGAGATAGCTTC-ACTATGA-AA
1 GGCACTTAGTGTGCGAAA-TGAGATAGCTTCGACTAT-ATAA
* * *
45742263 GGCACTTAGTGTACGAGATTACGATAGCTTCGACTATGA-AA
1 GGCACTTAGTGTGCGAAATGA-GATAGCTTCGACTAT-ATAA
*
45742304 GGCTCTTAGT
1 GGCACTTAGT
45742314 TATGAGATTA
Statistics
Matches: 107, Mismatches: 16, Indels: 15
0.78 0.12 0.11
Matches are distributed among these distances:
39 3 0.03
40 72 0.67
41 31 0.29
42 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (40 bp):
GGCACTTAGTGTGCGAAATGAGATAGCTTCGACTATATAA
Found at i:45742340 original size:40 final size:41
Alignment explanation
Indices: 45742246--45742332 Score: 133
Period size: 40 Copynumber: 2.2 Consensus size: 41
45742236 CGAAACTGAG
*
45742246 ATAGCTTC-ACTATGAAAGGCACTTAGTGTACGAGATTACG
1 ATAGCTTCGACTATGAAAGGCACTTAGTGTACGAGATTACA
* *
45742286 ATAGCTTCGACTATGAAAGGCTCTTAGT-TATGAGATTACA
1 ATAGCTTCGACTATGAAAGGCACTTAGTGTACGAGATTACA
45742326 ATAGCTT
1 ATAGCTT
45742333 TGGCTATGCT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
40 25 0.58
41 18 0.42
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31
Consensus pattern (41 bp):
ATAGCTTCGACTATGAAAGGCACTTAGTGTACGAGATTACA
Found at i:45744393 original size:27 final size:27
Alignment explanation
Indices: 45744363--45744508 Score: 184
Period size: 27 Copynumber: 5.4 Consensus size: 27
45744353 GGGACAAAAT
* * *
45744363 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
45744390 GGTAATTCTACTCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
45744417 GGTATTTCTATCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
45744444 GGTAATTCTATCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
45744471 GGTAATTCTACCCTACAAGGATATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
45744498 GGTAATTCTAC
1 GGTAATTCTAC
45744509 AACTTATCCA
Statistics
Matches: 101, Mismatches: 18, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 101 1.00
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:45744446 original size:54 final size:55
Alignment explanation
Indices: 45744363--45744508 Score: 215
Period size: 54 Copynumber: 2.7 Consensus size: 55
45744353 GGGACAAAAT
* * * *
45744363 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACTC-TACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACTCTTACAGGGGTATTTC
* *
45744417 GGTATTTCTATCCTACAAGGGTATTTCGGTAATTCTA-TCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACTCTTACAGGGGTATTTC
*
45744471 GGTAATTCTACCCTACAAGGATATTTCGGTAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTAC
45744509 AACTTATCCA
Statistics
Matches: 81, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
53 2 0.02
54 79 0.98
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (55 bp):
GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACTCTTACAGGGGTATTTC
Found at i:45749746 original size:27 final size:26
Alignment explanation
Indices: 45749698--45749757 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
45749688 GTGAGGCTGC
*
45749698 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
45749725 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
45749751 CAGATAT
1 CAGATAT
45749758 ATATATGTGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:45749770 original size:33 final size:32
Alignment explanation
Indices: 45749719--45749782 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
45749709 ACGAAGTCAC
* *
45749719 CAGATACAGATATTGTGGCTAGGCCACCAGAA
1 CAGATACAGATATTGTGGCGAAGCCACCAGAA
* *
45749751 CAGATATATATATGTGTGGCGAAGCCACCAGA
1 CAGATACAGATAT-TGTGGCGAAGCCACCAGA
45749783 TTGCAGCGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.20
Consensus pattern (32 bp):
CAGATACAGATATTGTGGCGAAGCCACCAGAA
Found at i:45749846 original size:27 final size:26
Alignment explanation
Indices: 45749798--45749849 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
45749788 GCGAGGCTGC
*
45749798 TAGATATTGTGACGAAGTCACCAGAA
1 TAGATATTGTGACGAAGCCACCAGAA
* *
45749824 TAGATATATGTGGCGAGGCCACCAGA
1 TAGATAT-TGTGACGAAGCCACCAGA
45749850 TTGCAGCAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.17, G:0.27, T:0.21
Consensus pattern (26 bp):
TAGATATTGTGACGAAGCCACCAGAA
Found at i:45750539 original size:27 final size:27
Alignment explanation
Indices: 45750503--45750619 Score: 171
Period size: 27 Copynumber: 4.3 Consensus size: 27
45750493 GGCAAAATGT
* *
45750503 TAATTTTACCCCACAAGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGG
*
45750530 TATTTCTACCCTACAAGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGG
* *
45750557 TAATTCTATCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGG
* *
45750584 TAATTCCACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGG
45750611 TAATTCTAC
1 TAATTCTAC
45750620 AACTTATTCA
Statistics
Matches: 81, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 81 1.00
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (27 bp):
TAATTCTACCCTACAAGGGTATTTCGG
Found at i:45756773 original size:5 final size:6
Alignment explanation
Indices: 45756759--45756794 Score: 54
Period size: 6 Copynumber: 5.7 Consensus size: 6
45756749 ATTTTATCTG
45756759 TTTTCT TTTTCT TTTTCTT TTTTCT TTTATCT TTTT
1 TTTTCT TTTTCT TTTTC-T TTTTCT TTT-TCT TTTT
45756795 TATGTTTATG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
6 16 0.57
7 12 0.43
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTCT
Found at i:45756780 original size:7 final size:7
Alignment explanation
Indices: 45756759--45756795 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
45756749 ATTTTATCTG
45756759 TTTTC-T
1 TTTTCTT
45756765 TTTTC-T
1 TTTTCTT
45756771 TTTTCTT
1 TTTTCTT
45756778 TTTTCTT
1 TTTTCTT
*
45756785 TTATCTT
1 TTTTCTT
45756792 TTTT
1 TTTT
45756796 ATGTTTATGT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
6 11 0.39
7 17 0.61
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.84
Consensus pattern (7 bp):
TTTTCTT
Found at i:45756782 original size:13 final size:13
Alignment explanation
Indices: 45756759--45756795 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
45756749 ATTTTATCTG
45756759 TTTTC-TTTTTCT
1 TTTTCTTTTTTCT
45756771 TTTTCTTTTTTCT
1 TTTTCTTTTTTCT
45756784 TTTATCTTTTTT
1 TTT-TCTTTTTT
45756796 ATGTTTATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 5 0.22
13 10 0.43
14 8 0.35
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.84
Consensus pattern (13 bp):
TTTTCTTTTTTCT
Found at i:45757595 original size:34 final size:34
Alignment explanation
Indices: 45757557--45757625 Score: 86
Period size: 34 Copynumber: 2.0 Consensus size: 34
45757547 TCAAAATGTA
*
45757557 AACAGTAAT-AGACTGGGCCTAAGCCCTTCACAGT
1 AACAGT-ATCAGACTGGGCCTAAGCCCATCACAGT
** *
45757591 AACAGTATCAGTTTGGGCCTTAGCCCATCACAGT
1 AACAGTATCAGACTGGGCCTAAGCCCATCACAGT
45757625 A
1 A
45757626 TTAGTAATCA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
33 2 0.07
34 28 0.93
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.23
Consensus pattern (34 bp):
AACAGTATCAGACTGGGCCTAAGCCCATCACAGT
Found at i:45760392 original size:13 final size:13
Alignment explanation
Indices: 45760374--45760398 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45760364 TAATTAATAT
45760374 GTGTGAAAATTTC
1 GTGTGAAAATTTC
45760387 GTGTGAAAATTT
1 GTGTGAAAATTT
45760399 TATAGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:45761571 original size:43 final size:43
Alignment explanation
Indices: 45761413--45761574 Score: 134
Period size: 43 Copynumber: 3.8 Consensus size: 43
45761403 TAGTATTACA
** * *
45761413 ATATGTGACTTCGTGTAAGACCACGTCTAGGAC-GTTGGCATCA
1 ATATGTGACTTCGTGTAAGACCATATCTGGGACAG-TGGCATCG
* * * * *
45761456 ATTTGTGATTTACGTGTAAGACCATATCTGGGACATTAGCATTG
1 ATATGTGACTT-CGTGTAAGACCATATCTGGGACAGTGGCATCG
* * *
45761500 -TATATGAGTTCGTGTAAGA-TACTATCTGGGACAGTGGCATCG
1 ATATGTGACTTCGTGTAAGACCA-TATCTGGGACAGTGGCATCG
* *
45761542 ATATGTGA-TTACATGTAAGACCATGTCTGGGAC
1 ATATGTGACTT-CGTGTAAGACCATATCTGGGAC
45761575 GTTGGTGTTG
Statistics
Matches: 93, Mismatches: 20, Indels: 12
0.74 0.16 0.10
Matches are distributed among these distances:
41 1 0.01
42 28 0.30
43 39 0.42
44 25 0.27
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (43 bp):
ATATGTGACTTCGTGTAAGACCATATCTGGGACAGTGGCATCG
Found at i:45765629 original size:11 final size:11
Alignment explanation
Indices: 45765613--45765637 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
45765603 AGCTTTGATC
45765613 AGTGCCAGAAA
1 AGTGCCAGAAA
45765624 AGTGCCAGAAA
1 AGTGCCAGAAA
45765635 AGT
1 AGT
45765638 TTTGATCAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.16, G:0.28, T:0.12
Consensus pattern (11 bp):
AGTGCCAGAAA
Found at i:45773529 original size:27 final size:27
Alignment explanation
Indices: 45773467--45773530 Score: 67
Period size: 27 Copynumber: 2.3 Consensus size: 27
45773457 TCCCTCTCCC
* *
45773467 CTTTCTCCTTTTCCTTCTTTTTTCTCTTT
1 CTTTC-CC-TTTCCTTCTTCTTTCTCTAT
*
45773496 CTCTCCCTTTCC-TCTTCTTTCTTCTAT
1 CTTTCCCTTTCCTTCTTCTTTC-TCTAT
45773523 CTTTCCCT
1 CTTTCCCT
45773531 CCCCTATATC
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
26 8 0.27
27 16 0.53
28 2 0.07
29 4 0.13
ACGTcount: A:0.02, C:0.38, G:0.00, T:0.61
Consensus pattern (27 bp):
CTTTCCCTTTCCTTCTTCTTTCTCTAT
Found at i:45773975 original size:14 final size:15
Alignment explanation
Indices: 45773950--45774014 Score: 64
Period size: 14 Copynumber: 4.4 Consensus size: 15
45773940 TTCCCTATTC
45773950 TTTATT-TTCTTTAT
1 TTTATTATTCTTTAT
45773964 TTT-TTATTCTTTTTAT
1 TTTATTATTC--TTTAT
*
45773980 TTTATTATACTTTAT
1 TTTATTATTCTTTAT
**
45773995 TTTATT-TTAATTAT
1 TTTATTATTCTTTAT
45774009 TTTATT
1 TTTATT
45774015 TTGATTCTTG
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
13 2 0.05
14 17 0.40
15 11 0.26
16 8 0.19
17 5 0.12
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.75
Consensus pattern (15 bp):
TTTATTATTCTTTAT
Found at i:45773981 original size:16 final size:16
Alignment explanation
Indices: 45773945--45773992 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
45773935 TCGGTTTCCC
*
45773945 TATTCTTTATT-TTCTT
1 TATTTTTTATTCTT-TT
45773961 TATTTTTTATTCTTTT
1 TATTTTTTATTCTTTT
*
45773977 TATTTTATTATACTTT
1 TATTTT-TTATTCTTT
45773993 ATTTTATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 18 0.64
17 10 0.36
ACGTcount: A:0.17, C:0.08, G:0.00, T:0.75
Consensus pattern (16 bp):
TATTTTTTATTCTTTT
Found at i:45773984 original size:5 final size:5
Alignment explanation
Indices: 45773950--45774016 Score: 57
Period size: 5 Copynumber: 13.6 Consensus size: 5
45773940 TTCCCTATTC
* * * * *
45773950 TTTAT TTTCT TTATTT TTTAT TCT-T TTTAT TTTAT TATAC TTTAT TTTAT
1 TTTAT TTTAT TT-TAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT
*
45774000 TTTA- ATTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTT
45774017 GATTCTTGCA
Statistics
Matches: 48, Mismatches: 11, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
4 6 0.12
5 38 0.79
6 4 0.08
ACGTcount: A:0.19, C:0.04, G:0.00, T:0.76
Consensus pattern (5 bp):
TTTAT
Found at i:45777194 original size:9 final size:9
Alignment explanation
Indices: 45777180--45777211 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
45777170 GCAATTTAAT
45777180 TTAATTTTA
1 TTAATTTTA
45777189 TTAATTTTA
1 TTAATTTTA
45777198 TT-A-TTTA
1 TTAATTTTA
45777205 TTAATTT
1 TTAATTT
45777212 ACTTTTTCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
7 6 0.29
8 2 0.10
9 13 0.62
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (9 bp):
TTAATTTTA
Found at i:45785444 original size:6 final size:6
Alignment explanation
Indices: 45785429--45785502 Score: 85
Period size: 6 Copynumber: 12.3 Consensus size: 6
45785419 ATTGAGTCCA
* * * * *
45785429 TTTATC TTTATG TTTATT TTTATT TTTATT TTCATT TTTATC TTCATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
* *
45785477 TTTATT TTTCTT TTTATG TTTATT TT
1 TTTATT TTTATT TTTATT TTTATT TT
45785503 GTCTTTATAT
Statistics
Matches: 56, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
6 56 1.00
ACGTcount: A:0.15, C:0.07, G:0.03, T:0.76
Consensus pattern (6 bp):
TTTATT
Found at i:45785450 original size:12 final size:12
Alignment explanation
Indices: 45785429--45785515 Score: 79
Period size: 12 Copynumber: 7.2 Consensus size: 12
45785419 ATTGAGTCCA
*
45785429 TTTATCTTTATG
1 TTTATCTTTATT
*
45785441 TTTATTTTTATT
1 TTTATCTTTATT
45785453 TTTAT-TTTCATT
1 TTTATCTTT-ATT
*
45785465 TTTATCTTCATT
1 TTTATCTTTATT
* *
45785477 TTTATTTTTCTT
1 TTTATCTTTATT
*
45785489 TTTATGTTTA-T
1 TTTATCTTTATT
*
45785500 TTTGTCTTTATAT
1 TTTATCTTTAT-T
45785513 TTT
1 TTT
45785516 GAAATCTATT
Statistics
Matches: 61, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
11 12 0.20
12 43 0.70
13 6 0.10
ACGTcount: A:0.15, C:0.07, G:0.03, T:0.75
Consensus pattern (12 bp):
TTTATCTTTATT
Found at i:45791742 original size:18 final size:18
Alignment explanation
Indices: 45791719--45791757 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
45791709 TTGCTTATGA
45791719 CTTGCTAAGCTATTCAAG
1 CTTGCTAAGCTATTCAAG
45791737 CTTGCTAAGCTATTCAAG
1 CTTGCTAAGCTATTCAAG
45791755 CTT
1 CTT
45791758 ACTCTGTGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (18 bp):
CTTGCTAAGCTATTCAAG
Found at i:45797080 original size:27 final size:27
Alignment explanation
Indices: 45797049--45797226 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
45797039 TAAATTGTAC
45797049 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
45797076 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
45797102 ATGCACTAAGTGTGCGAATTGACCATGT
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
45797130 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
45797158 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
45797185 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
45797212 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
45797227 GACTCAATAT
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:45797163 original size:82 final size:81
Alignment explanation
Indices: 45797050--45797205 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
45797040 AAATTGTACA
* *
45797050 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
45797114 TGCGAATTGACCATGTG
65 TGCGAATTGACCATGTG
** *
45797131 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
45797196 TGCGAGTTGA
65 TGCGAATTGA
45797206 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGTG
Found at i:45797217 original size:82 final size:81
Alignment explanation
Indices: 45797049--45797226 Score: 232
Period size: 82 Copynumber: 2.2 Consensus size: 81
45797039 TAAATTGTAC
* *
45797049 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTG
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTG
*
45797114 TGCGAATTGACCATGT
66 TGCGAATTGACCATAT
* ** *
45797130 GGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAG
1 AGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAG
* **
45797194 TGTGCGAGTTGATTATAT
64 TGTGCGAATTGACCATAT
*
45797212 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
45797227 GACTCAATAT
Statistics
Matches: 83, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
81 16 0.19
82 67 0.81
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTG
TGCGAATTGACCATAT
Found at i:45816939 original size:40 final size:40
Alignment explanation
Indices: 45816757--45816979 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
45816747 TCCTCGTTCA
* * * * *
45816757 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
45816796 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
45816836 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
45816876 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
45816916 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
45816956 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
45816980 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 115 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:45816988 original size:41 final size:41
Alignment explanation
Indices: 45816911--45816988 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
45816901 TTAGTATCTC
* * *
45816911 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
45816952 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
45816989 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:45820597 original size:46 final size:46
Alignment explanation
Indices: 45820528--45820699 Score: 168
Period size: 46 Copynumber: 3.7 Consensus size: 46
45820518 TGTAACCCGC
* *
45820528 CCATAAGCGAACTCCGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
* * * * *
45820574 CCATAAGTGAACTCGGACGCAACTCAACGAGCTCGGATGTCTAG-TT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGT-TCGCAT
* * * * *
45820620 ACATATCA-CGAACTCGGACTCAACTAAACGAGTTCAGACATTCGCAT
1 CCATA--AGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
* * *
45820667 TCATAAGTGAACTCAGACTCAACTCAACGAGCT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCT
45820700 TGGATGCCCA
Statistics
Matches: 99, Mismatches: 22, Indels: 10
0.76 0.17 0.08
Matches are distributed among these distances:
45 1 0.01
46 64 0.65
47 33 0.33
48 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
Found at i:45820643 original size:93 final size:93
Alignment explanation
Indices: 45820535--45820705 Score: 252
Period size: 93 Copynumber: 1.8 Consensus size: 93
45820525 CGCCCATAAG
* * * * *
45820535 CGAACTCCGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACGCAACTCA
1 CGAACTCCGACTCAACTAAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACGCAACTCA
45820600 ACGAGCTCGGATGTCTAGTTACATATCA
66 ACGAGCTCGGATGTCTAGTTACATATCA
* * * *
45820628 CGAACTCGGACTCAACTAAACGAGTTCAGACATTCGCATTCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCCGACTCAACTAAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACGCAACTCA
*
45820693 ACGAGCTTGGATG
66 ACGAGCTCGGATG
45820706 CCCAAATATC
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCCGACTCAACTAAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACGCAACTCA
ACGAGCTCGGATGTCTAGTTACATATCA
Found at i:45827985 original size:79 final size:81
Alignment explanation
Indices: 45827849--45828033 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
45827839 TTGAATGATG
* *
45827849 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
45827913 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
45827928 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
45827990 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
45828008 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
45828034 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:45828047 original size:40 final size:40
Alignment explanation
Indices: 45827850--45828033 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
45827840 TGAATGATGT
* * * *
45827850 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
45827890 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
45827930 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
45827968 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
45828009 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
45828034 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:45828055 original size:79 final size:79
Alignment explanation
Indices: 45827902--45828066 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
45827892 GGACTAAGAT
* * **
45827902 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
45827967 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
45827981 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
45828044 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
45828060 CCGAAGG
1 CCGAAGG
45828067 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:45832770 original size:20 final size:20
Alignment explanation
Indices: 45832723--45832763 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
45832713 CAAAATGACC
*
45832723 CAGGGCCATTTTAGGCCAAG
1 CAGGGCCATTTGAGGCCAAG
*
45832743 CAGGGCCATTTGGGGCCAAG
1 CAGGGCCATTTGAGGCCAAG
45832763 C
1 C
45832764 TAGGCCAAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.22, C:0.27, G:0.34, T:0.17
Consensus pattern (20 bp):
CAGGGCCATTTGAGGCCAAG
Found at i:45835928 original size:39 final size:40
Alignment explanation
Indices: 45835828--45836012 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
45835818 TCGAATGATG
* * *
45835828 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
45835867 ATCCAGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
45835908 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
45835947 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
45835986 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
45836013 AATGAGTAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 35 0.29
40 77 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:45836034 original size:79 final size:79
Alignment explanation
Indices: 45835881--45836045 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
45835871 AGACTAAGAT
* **
45835881 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
45835946 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * * *
45835960 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAATGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
45836023 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
45836039 CCGAAGG
1 CCGAAGG
45836046 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.66
80 23 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:45839429 original size:20 final size:20
Alignment explanation
Indices: 45839399--45839446 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
45839389 CCTATACACC
* *
45839399 CATGTGCAACCTCACATGCT
1 CATGTGTAACCTCACACGCT
*
45839419 CGTGTGTAACCTCACACGCT
1 CATGTGTAACCTCACACGCT
45839439 CATGTGTA
1 CATGTGTA
45839447 TGGACCGTGT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (20 bp):
CATGTGTAACCTCACACGCT
Found at i:45841617 original size:40 final size:40
Alignment explanation
Indices: 45841587--45841796 Score: 314
Period size: 40 Copynumber: 5.3 Consensus size: 40
45841577 GGACTAAGAT
* * * **
45841587 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
45841627 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
45841667 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
45841707 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
* ** * * *
45841747 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
45841786 CCGAAGGCATT
1 CCGAAGGCATT
45841797 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 33 0.21
40 126 0.79
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
Found at i:45844967 original size:25 final size:25
Alignment explanation
Indices: 45844939--45844989 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
45844929 ATTATTACTA
*
45844939 ATTCAATCTTTAAATGATTAAACAT
1 ATTCAATCTCTAAATGATTAAACAT
45844964 ATTCAATCTCTAAATGATTAAACAT
1 ATTCAATCTCTAAATGATTAAACAT
45844989 A
1 A
45844990 CACCATACAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.45, C:0.14, G:0.04, T:0.37
Consensus pattern (25 bp):
ATTCAATCTCTAAATGATTAAACAT
Found at i:45848925 original size:21 final size:21
Alignment explanation
Indices: 45848896--45848952 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 21
45848886 ATTGTTGTTG
* *
45848896 AGAAGGAAGTTGCTGTTGCAGA
1 AGAA-GAAGTTGCTGCTGAAGA
*
45848918 AGAAGAAGTTGTTGCTGAAGA
1 AGAAGAAGTTGCTGCTGAAGA
45848939 AGAAGAAGTTGCTG
1 AGAAGAAGTTGCTG
45848953 AAAATGAGAA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
21 27 0.87
22 4 0.13
ACGTcount: A:0.35, C:0.07, G:0.35, T:0.23
Consensus pattern (21 bp):
AGAAGAAGTTGCTGCTGAAGA
Found at i:45848949 original size:18 final size:18
Alignment explanation
Indices: 45848910--45848954 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
45848900 GGAAGTTGCT
* **
45848910 GTTGCAGAAGAAGAAGTT
1 GTTGCTGAAGAAGAAGAA
45848928 GTTGCTGAAGAAGAAGAA
1 GTTGCTGAAGAAGAAGAA
45848946 GTTGCTGAA
1 GTTGCTGAA
45848955 AATGAGAAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.38, C:0.07, G:0.33, T:0.22
Consensus pattern (18 bp):
GTTGCTGAAGAAGAAGAA
Found at i:45849281 original size:14 final size:15
Alignment explanation
Indices: 45849262--45849291 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
45849252 AAAATGAAAG
45849262 AATGAGGAG-AAGAA
1 AATGAGGAGAAAGAA
45849276 AATGAGGAGAAAGAA
1 AATGAGGAGAAAGAA
45849291 A
1 A
45849292 CATCGTGCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.60, C:0.00, G:0.33, T:0.07
Consensus pattern (15 bp):
AATGAGGAGAAAGAA
Found at i:45854689 original size:45 final size:44
Alignment explanation
Indices: 45854593--45854740 Score: 162
Period size: 45 Copynumber: 3.3 Consensus size: 44
45854583 ACACTTCGGA
*
45854593 ATAAT-AATAGATACAC-GGTGG-ATCATCACATAGC-ACCACCCTT
1 ATAATCAAT-GATAC-CTGGTGGAATCAGCACATAGCAACCA-CCTT
* *
45854636 ATAGTCAATGATACTTGGTGGAATCAGCACATAGCAACCACCTT
1 ATAATCAATGATACCTGGTGGAATCAGCACATAGCAACCACCTT
* *
45854680 CATAATCAAT-AGTACCTGGTGGAATCAGCACACAACAACCACCTTT
1 -ATAATCAATGA-TACCTGGTGGAATCAGCACATAGCAACCACC-TT
45854726 ATAATCAATGATACC
1 ATAATCAATGATACC
45854741 CGGTACACGT
Statistics
Matches: 90, Mismatches: 7, Indels: 14
0.81 0.06 0.13
Matches are distributed among these distances:
43 14 0.16
44 20 0.22
45 53 0.59
46 3 0.03
ACGTcount: A:0.37, C:0.25, G:0.14, T:0.24
Consensus pattern (44 bp):
ATAATCAATGATACCTGGTGGAATCAGCACATAGCAACCACCTT
Found at i:45887014 original size:27 final size:27
Alignment explanation
Indices: 45886984--45887161 Score: 164
Period size: 27 Copynumber: 6.6 Consensus size: 27
45886974 ATATTGAGCC
* *
45886984 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
45887011 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
45887038 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
45887066 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
45887093 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
*
45887120 CGCACACTTAGTGCAACA-AAGTCGAA-T
1 CGCACACTTAGTGCTACATAA-TC-AACT
45887147 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
45887162 GTACAATTTA
Statistics
Matches: 126, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.01
27 100 0.79
28 25 0.20
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:45887123 original size:82 final size:81
Alignment explanation
Indices: 45887005--45887160 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
45886995 TGCTATATAA
* * * *
45887005 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACAAAGTC-GAATCGCA
45887070 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
45887087 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACAAAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACAAAGTCGAATCGCA
45887151 CACTTAGTGC
65 CACTTAGTGC
45887161 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 19 0.29
82 46 0.71
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACAAAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:45895009 original size:27 final size:27
Alignment explanation
Indices: 45894979--45895237 Score: 234
Period size: 27 Copynumber: 9.6 Consensus size: 27
45894969 ATATCGAGTC
* *
45894979 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
45895006 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
45895033 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
45895061 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
45895088 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
45895115 CACACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
** ** *
45895142 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
45895169 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
45895196 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
45895223 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
45895238 GTACAATTTA
Statistics
Matches: 197, Mismatches: 30, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
27 172 0.87
28 25 0.13
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:45895139 original size:54 final size:54
Alignment explanation
Indices: 45894979--45895236 Score: 277
Period size: 54 Copynumber: 4.8 Consensus size: 54
45894969 ATATCGAGTC
* * * * *
45894979 CGCACACTCAGTGCTAT-ATAATCAACTCGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGC-ATCATAGTCAATTCGCACACTTAGTGCAACATAGTCAAAT
* ** * *
45895033 CGCACACTTAGTGC-TACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAT-CATAGTC-AATTCGCACACTTAGTGCAACATAGTCAAAT
* * *
45895088 CGCACACTTAGTGCATCATATTCATTTCACACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCATCATAGTCAATTCGCACACTTAGTGCAACATAGTCAAAT
** * * * **
45895142 CGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGCATCATATTCATTT
1 CGCACACTTAGTGCATCATAGTCAATTCGCACACTTAGTGCAACATAGTCAAAT
* *
45895196 CGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGC
1 CGCACACTTAGTGCATCATAGTCAATTCGCACACTTAGTGC
45895237 TGTACAATTT
Statistics
Matches: 171, Mismatches: 29, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
52 1 0.01
54 123 0.72
55 46 0.27
56 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCATCATAGTCAATTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:45895178 original size:81 final size:81
Alignment explanation
Indices: 45895000--45895236 Score: 395
Period size: 81 Copynumber: 2.9 Consensus size: 81
45894990 TGCTATATAA
* * ** *
45895000 TCAACTCGCACACTTAGTGC-TACATAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGC
1 TCAATTCGCACACTTAGTGCAT-CATATTCATTTCGCACACTTAGTGCAACATAGTCAAA-TCGC
45895064 ACACTTAGTGCCGCATGG
64 ACACTTAGTGCCGCATGG
*
45895082 TCAATTCGCACACTTAGTGCATCATATTCATTTCACACACTTAGTGCAACATAGTCAAATCGCAC
1 TCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCAC
45895147 ACTTAGTGCCGCATGG
66 ACTTAGTGCCGCATGG
45895163 TCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCAC
1 TCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCAC
45895228 ACTTAGTGC
66 ACTTAGTGC
45895237 TGTACAATTT
Statistics
Matches: 147, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
81 95 0.65
82 51 0.35
83 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:45904176 original size:24 final size:24
Alignment explanation
Indices: 45904149--45904195 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
45904139 AAGATTTAGT
**
45904149 ATTTATTAGTATAATATATTTGAC
1 ATTTATTAACATAATATATTTGAC
*
45904173 ATTTATTAACATAATTTATTTGA
1 ATTTATTAACATAATATATTTGA
45904196 TTTACGAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.38, C:0.04, G:0.06, T:0.51
Consensus pattern (24 bp):
ATTTATTAACATAATATATTTGAC
Found at i:45908022 original size:17 final size:17
Alignment explanation
Indices: 45908001--45908102 Score: 69
Period size: 17 Copynumber: 6.0 Consensus size: 17
45907991 CTGTTTATAT
*
45908001 AAAATAATAGTTCATAC
1 AAAATAACAGTTCATAC
* * * *
45908018 CAAATGACAGCTCATGC
1 AAAATAACAGTTCATAC
* * *
45908035 AAAATAATATTTCATAT
1 AAAATAACAGTTCATAC
* **
45908052 GAAATATTAGTTCATAC
1 AAAATAACAGTTCATAC
** * *
45908069 TGAATAACAATTCATGC
1 AAAATAACAGTTCATAC
45908086 AAAATAACAGTTCATAC
1 AAAATAACAGTTCATAC
45908103 TTCATTATAA
Statistics
Matches: 59, Mismatches: 26, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
17 59 1.00
ACGTcount: A:0.46, C:0.16, G:0.09, T:0.29
Consensus pattern (17 bp):
AAAATAACAGTTCATAC
Found at i:45908063 original size:51 final size:51
Alignment explanation
Indices: 45907997--45908101 Score: 129
Period size: 51 Copynumber: 2.1 Consensus size: 51
45907987 ATATCTGTTT
* * * *
45907997 ATATAAAATAATAGTTCATACCAAATGACAGCTCATGCAAAATAATATTTC
1 ATATAAAATAATAGTTCATACCAAATAACAACTCATGCAAAATAACAGTTC
* * ** *
45908048 ATATGAAATATTAGTTCATACTGAATAACAATTCATGCAAAATAACAGTTC
1 ATATAAAATAATAGTTCATACCAAATAACAACTCATGCAAAATAACAGTTC
45908099 ATA
1 ATA
45908102 CTTCATTATA
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 45 1.00
ACGTcount: A:0.47, C:0.14, G:0.09, T:0.30
Consensus pattern (51 bp):
ATATAAAATAATAGTTCATACCAAATAACAACTCATGCAAAATAACAGTTC
Found at i:45908760 original size:18 final size:18
Alignment explanation
Indices: 45908734--45908782 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
45908724 CATAGTTTGG
45908734 CAAATTAATACA-ATTCAC
1 CAAATTAATACAGA-TCAC
*
45908752 CATATTAATACAGATCAC
1 CAAATTAATACAGATCAC
*
45908770 CAAATTAACACAG
1 CAAATTAATACAG
45908783 TTCGCCTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
18 26 0.96
19 1 0.04
ACGTcount: A:0.49, C:0.22, G:0.04, T:0.24
Consensus pattern (18 bp):
CAAATTAATACAGATCAC
Found at i:45910834 original size:11 final size:11
Alignment explanation
Indices: 45910818--45910846 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
45910808 AGGGAATGAA
45910818 GAGAGAAAAGT
1 GAGAGAAAAGT
45910829 GAGAGAAAAGT
1 GAGAGAAAAGT
45910840 GA-AGAAA
1 GAGAGAAA
45910847 TAAATGAGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 5 0.28
11 13 0.72
ACGTcount: A:0.59, C:0.00, G:0.34, T:0.07
Consensus pattern (11 bp):
GAGAGAAAAGT
Found at i:45912783 original size:15 final size:15
Alignment explanation
Indices: 45912727--45912783 Score: 55
Period size: 15 Copynumber: 3.8 Consensus size: 15
45912717 CTTAACCTAA
45912727 AATTA-TTAATTC-T
1 AATTATTTAATTCTT
*
45912740 AATTATTTTAATATTTT
1 AATTA-TTTAAT-TCTT
* *
45912757 ATTTAATTAATTCTT
1 AATTATTTAATTCTT
45912772 AATTATTTAATT
1 AATTATTTAATT
45912784 ATCTAATCTA
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
13 5 0.15
15 18 0.53
16 6 0.18
17 5 0.15
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.60
Consensus pattern (15 bp):
AATTATTTAATTCTT
Found at i:45912796 original size:32 final size:31
Alignment explanation
Indices: 45912731--45912797 Score: 82
Period size: 32 Copynumber: 2.1 Consensus size: 31
45912721 ACCTAAAATT
* * *
45912731 ATTAATTCTAATTATTTTAATATTTTATTTA
1 ATTAATTCTAATTATTTTAATATCTAATCTA
45912762 ATTAATTCTTAATTA-TTTAATTATCTAATCTA
1 ATTAATTC-TAATTATTTTAA-TATCTAATCTA
45912794 ATTA
1 ATTA
45912798 TAGTTTCCAG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
31 13 0.42
32 18 0.58
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.57
Consensus pattern (31 bp):
ATTAATTCTAATTATTTTAATATCTAATCTA
Found at i:45918265 original size:45 final size:45
Alignment explanation
Indices: 45918184--45918427 Score: 245
Period size: 45 Copynumber: 5.3 Consensus size: 45
45918174 AGGTATAAGT
* * * ** * *
45918184 TATATATAATAATTGTCGGTTTTACTAACCAATGCTGGGTACACA
1 TATATATAATATTTGTTGGTTTCACCGACCAGTGCTGGGCACACA
* * * *
45918229 TATATAAAATATTTGCTAGTTTCACCGTCCAGTGCTGGGCACACA
1 TATATATAATATTTGTTGGTTTCACCGACCAGTGCTGGGCACACA
* * *
45918274 CATATATAATATTTGTTGGTTTCACCGACTAGTGCTGGACACACA
1 TATATATAATATTTGTTGGTTTCACCGACCAGTGCTGGGCACACA
* * * *
45918319 TATATATAATAATAATTGTCGGTGTCACCGACCAGTGCTAGGTACACGTA
1 TATATATAAT-AT--TTGTTGGTTTCACCGACCAGTGCTGGGCACAC--A
* * *
45918369 TATATATAATATTTGTTGGTTTCACTGAGCAATGCTGGGCACACA
1 TATATATAATATTTGTTGGTTTCACCGACCAGTGCTGGGCACACA
*
45918414 CATATATAATATTT
1 TATATATAATATTT
45918428 TCCAGTCACA
Statistics
Matches: 161, Mismatches: 33, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
45 95 0.59
46 2 0.01
47 25 0.16
48 26 0.16
49 2 0.01
50 11 0.07
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Consensus pattern (45 bp):
TATATATAATATTTGTTGGTTTCACCGACCAGTGCTGGGCACACA
Found at i:45918390 original size:95 final size:93
Alignment explanation
Indices: 45918224--45918424 Score: 246
Period size: 95 Copynumber: 2.2 Consensus size: 93
45918214 AATGCTGGGT
* * * * *
45918224 ACACATATATAA-AATATTTG-CTAGTTTCACCGTCCAGTGCTGGGCACACACATATATAATATT
1 ACACATATATAATAATAATTGTC-GGTGTCACCGACCAGTGCTAGGCACACACATATATAATATT
*
45918287 TGTTGGTTTCACCGA-CTAGTGCTGGACAC
65 TGTTGGTTTCACCGAGC-AATGCTGGACAC
* * *
45918316 ACATATATATAATAATAATTGTCGGTGTCACCGACCAGTGCTAGGTACACGTATATATATAATAT
1 ACACATATATAATAATAATTGTCGGTGTCACCGACCAGTGCTAGGCACAC--ACATATATAATAT
* *
45918381 TTGTTGGTTTCACTGAGCAATGCTGGGCAC
64 TTGTTGGTTTCACCGAGCAATGCTGGACAC
45918411 ACACATATATAATA
1 ACACATATATAATA
45918425 TTTTCCAGTC
Statistics
Matches: 92, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
92 11 0.12
93 29 0.32
94 1 0.01
95 50 0.54
96 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (93 bp):
ACACATATATAATAATAATTGTCGGTGTCACCGACCAGTGCTAGGCACACACATATATAATATTT
GTTGGTTTCACCGAGCAATGCTGGACAC
Found at i:45926962 original size:15 final size:15
Alignment explanation
Indices: 45926942--45926990 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
45926932 AGGTAAGATA
45926942 AACATAACACATCCC
1 AACATAACACATCCC
* *
45926957 AACAT-A-AGAT--A
1 AACATAACACATCCC
45926968 AACATAACACATCCC
1 AACATAACACATCCC
45926983 AACATAAC
1 AACATAAC
45926991 TTGGCCAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 8
0.68 0.11 0.21
Matches are distributed among these distances:
11 5 0.19
12 1 0.04
13 6 0.23
14 1 0.04
15 13 0.50
ACGTcount: A:0.53, C:0.31, G:0.02, T:0.14
Consensus pattern (15 bp):
AACATAACACATCCC
Found at i:45926964 original size:26 final size:26
Alignment explanation
Indices: 45926935--45926989 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
45926925 ACAAAATAGG
45926935 TAAGATAAACATAACACATCCCAACA
1 TAAGATAAACATAACACATCCCAACA
45926961 TAAGATAAACATAACACATCCCAACA
1 TAAGATAAACATAACACATCCCAACA
45926987 TAA
1 TAA
45926990 CTTGGCCAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.55, C:0.25, G:0.04, T:0.16
Consensus pattern (26 bp):
TAAGATAAACATAACACATCCCAACA
Found at i:45928727 original size:14 final size:14
Alignment explanation
Indices: 45928708--45928737 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
45928698 TGTTCGGTTG
*
45928708 AATTTTTTAAAAAT
1 AATTTTTGAAAAAT
45928722 AATTTTTGAAAAAT
1 AATTTTTGAAAAAT
45928736 AA
1 AA
45928738 AAATGAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.43
Consensus pattern (14 bp):
AATTTTTGAAAAAT
Done.