Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 144 of 316
Found at i:45929353 original size:26 final size:27
Alignment explanation
Indices: 45929324--45929375 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 27
45929314 TGTGTTTTTC
*
45929324 ATTTTTTTAAAATGAAAATG-AAAATT
1 ATTTTTTGAAAATGAAAATGTAAAATT
45929350 ATTTTTTGAAAATGAAAATGTAAAAT
1 ATTTTTTGAAAATGAAAATGTAAAAT
45929376 AAAACTAGCA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (27 bp):
ATTTTTTGAAAATGAAAATGTAAAATT
Found at i:45933455 original size:19 final size:19
Alignment explanation
Indices: 45933431--45933478 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
45933421 ATAACAACAT
* *
45933431 AATAGTGAAATGGTAGTAA
1 AATAGTGAAATGATAGCAA
45933450 AATAGTGAAATGATAGCAA
1 AATAGTGAAATGATAGCAA
45933469 AATAGTGAAA
1 AATAGTGAAA
45933479 AAAAGAAAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.52, C:0.02, G:0.23, T:0.23
Consensus pattern (19 bp):
AATAGTGAAATGATAGCAA
Found at i:45935245 original size:18 final size:19
Alignment explanation
Indices: 45935212--45935247 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
45935202 AATAACGAGG
45935212 AAAACAAAATATGCATAAC
1 AAAACAAAATATGCATAAC
*
45935231 AAAACTAAA-ATGCATAA
1 AAAACAAAATATGCATAA
45935248 AATAATTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.64, C:0.14, G:0.06, T:0.17
Consensus pattern (19 bp):
AAAACAAAATATGCATAAC
Found at i:45938092 original size:20 final size:20
Alignment explanation
Indices: 45938055--45938094 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
45938045 TAGATAAGCT
*
45938055 TTTATATTTTTATTAAATAA
1 TTTATATTTCTATTAAATAA
45938075 TTTATA-TTCTATTCAAATAA
1 TTTATATTTCTATT-AAATAA
45938095 GTTCTTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (20 bp):
TTTATATTTCTATTAAATAA
Found at i:45942924 original size:50 final size:50
Alignment explanation
Indices: 45942859--45943187 Score: 318
Period size: 46 Copynumber: 6.9 Consensus size: 50
45942849 ATGGGGTAAG
* * *
45942859 GTGCCAATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCGCATATCT
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCT
* *
45942909 GTGCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGCATATCT
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCT
* * *
45942959 GTGCCGATGCCATGTCCTAGACATGGTCTTACACT-G---ACACATCT-T
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCT
* *
45943004 GTAGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-T-ACATCTC-
1 GT-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCT
* * * * *
45943050 GAGGCCGATG-CATGTCCCAAACAT-GTCTTACACTGGCTCT--CATCTCA
1 G-TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCT
** * *
45943097 ACGCCGATGCCATGTCCCAGGCATGGTCTTACACTAG--CTCACATA-AT
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCT
*
45943144 GTGGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCACACA
1 GT-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACA
45943188 AGTGACCCTA
Statistics
Matches: 240, Mismatches: 24, Indels: 32
0.81 0.08 0.11
Matches are distributed among these distances:
44 10 0.04
45 17 0.07
46 80 0.33
47 26 0.11
48 26 0.11
49 1 0.00
50 80 0.33
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (50 bp):
GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCT
Found at i:45943152 original size:94 final size:92
Alignment explanation
Indices: 45942914--45943185 Score: 309
Period size: 94 Copynumber: 2.9 Consensus size: 92
45942904 TATCTGTGCT
* * *
45942914 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGCATATCTGTGCCGATGCCATGTCCTAG
1 GATGCCATGTCCCAGACATGGTCTTACACTAG--CTCACATATGTG-GCCGATG-CATGTCCCAG
* **
45942979 ACATGGTCTTACACTG-ACACATCTTGTAGCC
62 ACAT-GTCTTACACTGCTCACATCTTCAAGCC
* * * * *
45943010 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCGAGGCCGATGCATGTCCCAAACA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAT-GTGGCCGATGCATGTCCCAGACA
*
45943073 TGTCTTACACTGGCTCTCATC-TCAACGCC
65 TGTCTTACACT-GCTCACATCTTCAA-GCC
*
45943102 GATGCCATGTCCCAGGCATGGTCTTACACTAGCTCACATAATGTGGCCGATGCATGTCCCAGACA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT-ATGTGGCCGATGCATGTCCCAGACA
45943167 TGTCTTACACTAGCTCACA
65 TGTCTTACACT-GCTCACA
45943186 CAAGTGACCC
Statistics
Matches: 149, Mismatches: 20, Indels: 16
0.81 0.11 0.09
Matches are distributed among these distances:
90 10 0.07
91 15 0.10
92 25 0.17
93 14 0.09
94 66 0.44
95 15 0.10
96 4 0.03
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.26
Consensus pattern (92 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATGTGGCCGATGCATGTCCCAGACAT
GTCTTACACTGCTCACATCTTCAAGCC
Found at i:45943154 original size:140 final size:141
Alignment explanation
Indices: 45942914--45943177 Score: 372
Period size: 140 Copynumber: 1.9 Consensus size: 141
45942904 TATCTGTGCT
* *** *
45942914 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGCATATCTGTGCCGATGCCATGTCCTAG
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTC-CATATCAACGCCGATGCCATGTCCCAG
**
45942979 ACATGGTCTTACACTGACACATCTTGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTA
65 ACATGGTCTTACACTGACACATAATGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTA
45943044 CATCTCGAGGCC
130 CATCTCGAGGCC
* * *
45943056 GATG-CATGTCCCAAACAT-GTCTTACACTGGCTCT-CATCTCAACGCCGATGCCATGTCCCAGG
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCCATATCAACGCCGATGCCATGTCCCAGA
* *
45943118 CATGGTCTTACACTAGCTCACATAATGTGGCCGATGCATGTCCCAGACATGTCTTACACT
66 CATGGTCTTACACT-G-ACACATAATGTAGCCGATGCATGTCCCAGACATGTCTTACACT
45943178 AGCTCACACA
Statistics
Matches: 108, Mismatches: 12, Indels: 6
0.86 0.10 0.05
Matches are distributed among these distances:
138 36 0.33
139 1 0.01
140 54 0.50
141 13 0.12
142 4 0.04
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.27
Consensus pattern (141 bp):
GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCCATATCAACGCCGATGCCATGTCCCAGA
CATGGTCTTACACTGACACATAATGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTAC
ATCTCGAGGCC
Found at i:45944966 original size:22 final size:22
Alignment explanation
Indices: 45944919--45944965 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
45944909 AGATTTAGGA
45944919 TTTTAAAAACAATTTTATTTTC
1 TTTTAAAAACAATTTTATTTTC
45944941 TTTTAAAAACAATTTTA-TTTC
1 TTTTAAAAACAATTTTATTTTC
45944962 TTTT
1 TTTT
45944966 TTTTTAACTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 8 0.32
22 17 0.68
ACGTcount: A:0.34, C:0.09, G:0.00, T:0.57
Consensus pattern (22 bp):
TTTTAAAAACAATTTTATTTTC
Found at i:45949860 original size:37 final size:38
Alignment explanation
Indices: 45949743--45949883 Score: 203
Period size: 38 Copynumber: 3.7 Consensus size: 38
45949733 TGTGTGAGAT
45949743 TTATATCCGGCTAAGTCCCGAAGGCATTCGTGCTGGTA
1 TTATATCCGGCTAAGTCCCGAAGGCATTCGTGCTGGTA
* *
45949781 TTATATCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTA
1 TTATATCCGGCTAAGTCCCGAAGGCATTCGTGCTGGTA
* ** * *
45949819 TTATATCGGGCTAAGTCCC-AAGGCATTCGTATTGATG
1 TTATATCCGGCTAAGTCCCGAAGGCATTCGTGCTGGTA
*
45949856 TTATATCCGGCTAAGTTCCGAAGGCATT
1 TTATATCCGGCTAAGTCCCGAAGGCATT
45949884 TGGGTTGGAA
Statistics
Matches: 93, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
37 31 0.33
38 62 0.67
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.31
Consensus pattern (38 bp):
TTATATCCGGCTAAGTCCCGAAGGCATTCGTGCTGGTA
Found at i:45949871 original size:75 final size:76
Alignment explanation
Indices: 45949743--45949883 Score: 203
Period size: 75 Copynumber: 1.9 Consensus size: 76
45949733 TGTGTGAGAT
* * * *
45949743 TTATATCCGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATATCGGGTTAAGTCCCGAAGGCAT
1 TTATATCCGGCTAAGTCCCGAAGGCATTCGTACTGATATTATATCCGGCTAAGTCCCGAAGGCAT
45949808 TCGTGCTGGTA
66 TCGTGCTGGTA
* * * *
45949819 TTATATCGGGCTAAGTCCC-AAGGCATTCGTATTGATGTTATATCCGGCTAAGTTCCGAAGGCAT
1 TTATATCCGGCTAAGTCCCGAAGGCATTCGTACTGATATTATATCCGGCTAAGTCCCGAAGGCAT
45949883 T
66 T
45949884 TGGGTTGGAA
Statistics
Matches: 57, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
75 39 0.68
76 18 0.32
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.31
Consensus pattern (76 bp):
TTATATCCGGCTAAGTCCCGAAGGCATTCGTACTGATATTATATCCGGCTAAGTCCCGAAGGCAT
TCGTGCTGGTA
Found at i:45957939 original size:39 final size:39
Alignment explanation
Indices: 45957725--45957929 Score: 288
Period size: 39 Copynumber: 5.3 Consensus size: 39
45957715 AGGATTTTAA
* * * *
45957725 CCGGGCTAAGACCCGCAGGCCTT-GTG-TGAGATTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA-TTATAT
45957763 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
* ** *
45957802 CCTGATTAAGTCCCGAAGGCATTCGTGCTGGTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
45957841 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
* * *
45957880 CTGGGCTAAGTCCCGAAGGCATTCTTGCTGATGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
45957919 CCGGGCTAAGT
1 CCGGGCTAAGT
45957930 ATCGGAGGCA
Statistics
Matches: 149, Mismatches: 16, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
38 20 0.13
39 125 0.84
40 4 0.03
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.29
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
Found at i:45963826 original size:15 final size:15
Alignment explanation
Indices: 45963806--45963844 Score: 78
Period size: 15 Copynumber: 2.6 Consensus size: 15
45963796 ACAACTCAAC
45963806 ATTACTTGTCACTTT
1 ATTACTTGTCACTTT
45963821 ATTACTTGTCACTTT
1 ATTACTTGTCACTTT
45963836 ATTACTTGT
1 ATTACTTGT
45963845 TGCGATTGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.21, C:0.18, G:0.08, T:0.54
Consensus pattern (15 bp):
ATTACTTGTCACTTT
Found at i:45967012 original size:41 final size:41
Alignment explanation
Indices: 45966929--45967037 Score: 114
Period size: 41 Copynumber: 2.6 Consensus size: 41
45966919 CGGCATTTCA
*
45966929 CCTGTTAGGCTCG-AGGCCCGATATCAGTCCACCAGCATTATAG
1 CCTGCTAGGCTCGAAGGCCCGA-AT-AGT-CACCAGCATTATAG
*
45966972 CCTGCTAGGCTCGAAGGCCCGAATAGT-ATCCGGCATTATAG
1 CCTGCTAGGCTCGAAGGCCCGAATAGTCA-CCAGCATTATAG
** * *
45967013 TTTGCTAAGCTCAAAGGCCCGAATA
1 CCTGCTAGGCTCGAAGGCCCGAATA
45967038 ATCAAGTCAA
Statistics
Matches: 58, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
40 1 0.02
41 32 0.55
42 3 0.05
43 14 0.24
44 8 0.14
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.23
Consensus pattern (41 bp):
CCTGCTAGGCTCGAAGGCCCGAATAGTCACCAGCATTATAG
Found at i:45967402 original size:43 final size:43
Alignment explanation
Indices: 45967354--45967521 Score: 259
Period size: 43 Copynumber: 3.9 Consensus size: 43
45967344 ACATATCATT
*
45967354 TCACCGGCATTACA-CCTGCTAGGCACGAAGGCCCGAATACACA
1 TCACCGGCACTA-AGCCTGCTAGGCACGAAGGCCCGAATACACA
* *
45967397 TCACCGGTATTACA-CCTGCTAGGCACGAAGGCCCGAATACACA
1 TCACCGGCACTA-AGCCTGCTAGGCACGAAGGCCCGAATACACA
*
45967440 TCACTGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
*
45967483 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCAAATA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATA
45967522 TAATACTAGC
Statistics
Matches: 118, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
42 1 0.01
43 117 0.99
ACGTcount: A:0.30, C:0.33, G:0.22, T:0.14
Consensus pattern (43 bp):
TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
Found at i:45967513 original size:86 final size:84
Alignment explanation
Indices: 45967368--45967542 Score: 262
Period size: 86 Copynumber: 2.1 Consensus size: 84
45967358 CGGCATTACA
* * *
45967368 CCTGCTAGGCACGAAGGCCCGAATACACATCACCGGTATTACACCTGCTAGGCACGAAGGCCCGA
1 CCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTACACCTGCTAGGCACGAAGGCCCAA
*
45967433 ATACACATCACTGGCACTAAG
66 ATACA-AT-ACTAGCACTAAG
45967454 CCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTA-AGCCTGCTAGGCACGAAGGCCCA
1 CCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTACA-CCTGCTAGGCACGAAGGCCCA
* *
45967518 AATATAATACTAGCACTAGG
65 AATACAATACTAGCACTAAG
45967538 CCTGC
1 CCTGC
45967543 GGGATTTATC
Statistics
Matches: 82, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
84 15 0.18
85 3 0.04
86 64 0.78
ACGTcount: A:0.30, C:0.33, G:0.22, T:0.15
Consensus pattern (84 bp):
CCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTACACCTGCTAGGCACGAAGGCCCAA
ATACAATACTAGCACTAAG
Found at i:45969326 original size:26 final size:26
Alignment explanation
Indices: 45969297--45969742 Score: 116
Period size: 27 Copynumber: 16.7 Consensus size: 26
45969287 TTAGTTTACC
*
45969297 AAATTACTGAAATACCCCCAATTGTA
1 AAATTACTGAAATACCCCCAATGGTA
* * **
45969323 AAATTAC-CAAAGTACCCCCGATTTATA
1 AAATTACTGAAA-TACCCCC-AATGGTA
** * * *
45969350 AAATTACCCAAATATCCTCAATTTGTA
1 AAATTACTGAAATACCCCCAA-TGGTA
* * *
45969377 AAATTACCGAAATACCCCTATAAGGTA
1 AAATTACTGAAATACCCCCA-ATGGTA
* ***
45969404 GAATTACTGAAATA-CCCTTGTAGAGTA
1 AAATTACTGAAATACCCCCAAT-G-GTA
* * * *
45969431 GAATTACTAAAATACCCCTATAAGGTA
1 AAATTACTGAAATACCCCCA-ATGGTA
* ***
45969458 GAATTACTGAAATACCCTGTATGGTA
1 AAATTACTGAAATACCCCCAATGGTA
* *
45969484 CAATTACTGAAATACCCCTGTAA-GGTA
1 AAATTACTGAAATACCCC--CAATGGTA
* ** *** *
45969511 GAATTACCAAAATACCCTTGTAGGGTA
1 AAATTACTGAAATACCC-CCAATGGTA
* * * **
45969538 GAATTGCTAAAATACCCTTGTAA-GGTA
1 AAATTACTGAAATACCC--CCAATGGTA
* *
45969565 GAATTACTG-AATA-CCCCTATAGTGTA
1 AAATTACTGAAATACCCCCAAT-G-GTA
* * *
45969591 GAATTACTGAAATACCCCTATAAGGTA
1 AAATTACTGAAATACCCCCA-ATGGTA
* * *** *
45969618 GAATTACCGAAATACCCTGTAGGGTA
1 AAATTACTGAAATACCCCCAATGGTA
* * **
45969644 AAATGACTAAAATACCCTTGTAA-GGTA
1 AAATTACTGAAATACCC--CCAATGGTA
* * *
45969671 AAATGACTAAAATACCCCTGTAA-GGTA
1 AAATTACTGAAATACCCC--CAATGGTA
*
45969698 AAATTACTGAAATACCCCTATATGGTA
1 AAATTACTGAAATACCCCCA-ATGGTA
* *
45969725 GAATTACTAAAATACCCC
1 AAATTACTGAAATACCCC
45969743 TGTAGGGTAG
Statistics
Matches: 327, Mismatches: 67, Indels: 51
0.73 0.15 0.11
Matches are distributed among these distances:
23 1 0.00
25 8 0.02
26 77 0.24
27 222 0.68
28 18 0.06
29 1 0.00
ACGTcount: A:0.40, C:0.20, G:0.14, T:0.27
Consensus pattern (26 bp):
AAATTACTGAAATACCCCCAATGGTA
Found at i:45969408 original size:27 final size:27
Alignment explanation
Indices: 45969378--45969974 Score: 663
Period size: 27 Copynumber: 22.2 Consensus size: 27
45969368 CAATTTGTAA
* *
45969378 AATTACCGAAATACCCCTATAAGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAG
*
45969405 AATTACTGAAATACCCTTGT-AGAGTAG
1 AATTACTGAAATACCCCTGTAAG-GTAG
* *
45969432 AATTACTAAAATACCCCTATAAGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAG
* *
45969459 AATTACTGAAATA-CCCTGTATGGTAC
1 AATTACTGAAATACCCCTGTAAGGTAG
45969485 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAG
** * *
45969512 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAG
* * *
45969539 AATTGCTAAAATACCCTTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAG
*
45969566 AATTACTG-AATACCCCTAT-AGTGTAG
1 AATTACTGAAATACCCCTGTAAG-GTAG
*
45969592 AATTACTGAAATACCCCTATAAGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAG
* * *
45969619 AATTACCGAAATA-CCCTGTAGGGTAA
1 AATTACTGAAATACCCCTGTAAGGTAG
* * * *
45969645 AATGACTAAAATACCCTTGTAAGGTAA
1 AATTACTGAAATACCCCTGTAAGGTAG
* * *
45969672 AATGACTAAAATACCCCTGTAAGGTAA
1 AATTACTGAAATACCCCTGTAAGGTAG
* *
45969699 AATTACTGAAATACCCCTATATGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAG
* *
45969726 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAG
* *
45969753 AATTA-TCAAAATATCCCTGTAAGGTAG
1 AATTACT-GAAATACCCCTGTAAGGTAG
*
45969780 AATTA-TCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAAGGTAG
* * *
45969807 AATAACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAG
*
45969834 AATTA-TCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAAGGTAG
* *
45969861 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAG
*
45969888 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAG
* * *
45969915 AATTACCGAAATACCCTTGTAGGGTAGG
1 AATTACTGAAATACCCCTGTAAGGTA-G
* *
45969943 AA-TAATGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAG
*
45969969 CATTAC
1 AATTAC
45969975 GAAGAAACTC
Statistics
Matches: 499, Mismatches: 58, Indels: 26
0.86 0.10 0.04
Matches are distributed among these distances:
25 2 0.00
26 69 0.14
27 420 0.84
28 8 0.02
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAAGGTAG
Found at i:45969713 original size:54 final size:54
Alignment explanation
Indices: 45969378--45969974 Score: 731
Period size: 54 Copynumber: 11.1 Consensus size: 54
45969368 CAATTTGTAA
* * * *
45969378 AATTACCGAAATACCCCTATAAGGTAGAATTACTGAAATACCCTTGTAGAGTAG
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* * * *
45969432 AATTACTAAAATACCCCTATAAGGTAGAATTACTGAAATA-CCCTGTATGGTAC
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACTGAAATACCCCTGTAGGGTAG
** *
45969485 AATTACTGAAATACCCCTGTAAGGTAGAATTACCAAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* * * * *
45969539 AATTGCTAAAATACCCTTGTAAGGTAGAATTACTG-AATACCCCTATAGTGTAG
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* * *
45969592 AATTACTGAAATACCCCTATAAGGTAGAATTACCGAAATA-CCCTGTAGGGTAA
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* * * * * * * *
45969645 AATGACTAAAATACCCTTGTAAGGTAAAATGACTAAAATACCCCTGTAAGGTAA
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* * *
45969699 AATTACTGAAATACCCCTATATGGTAGAATTACTAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* *
45969753 AATTA-TCAAAATATCCCTGTAAGGTAGAATTA-TCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAAGGTAGAATTACT-GAAATACCCCTGTAGGGTAG
* * *
45969807 AATAACCGAAATACCCCTGTAGGGTAGAATTA-TCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACT-GAAATACCCCTGTAGGGTAG
* *
45969861 AATTATTGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* * * *
45969915 AATTACCGAAATACCCTTGTAGGGTAGGAA-TAATGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAAGGTA-GAATTACTGAAATACCCCTGTAGGGTAG
*
45969969 CATTAC
1 AATTAC
45969975 GAAGAAACTC
Statistics
Matches: 470, Mismatches: 65, Indels: 16
0.85 0.12 0.03
Matches are distributed among these distances:
53 134 0.29
54 332 0.71
55 4 0.01
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (54 bp):
AATTACTGAAATACCCCTGTAAGGTAGAATTACTGAAATACCCCTGTAGGGTAG
Found at i:45970433 original size:31 final size:31
Alignment explanation
Indices: 45970395--45970504 Score: 139
Period size: 31 Copynumber: 3.5 Consensus size: 31
45970385 TTGCATTCAC
*
45970395 ATTCTGATTTTGATTCTATTACCTAATACTG
1 ATTCTGATTCTGATTCTATTACCTAATACTG
* *
45970426 ATTCTGATTTTGATTCTATTACCTGATACTG
1 ATTCTGATTCTGATTCTATTACCTAATACTG
* * * * **
45970457 ATTCTGATTCTGATTTTGTCACTTAATTTTG
1 ATTCTGATTCTGATTCTATTACCTAATACTG
45970488 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
45970505 GATTCTGATT
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 69 1.00
ACGTcount: A:0.22, C:0.15, G:0.12, T:0.51
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTATTACCTAATACTG
Found at i:45970434 original size:6 final size:6
Alignment explanation
Indices: 45970395--45970525 Score: 90
Period size: 6 Copynumber: 21.3 Consensus size: 6
45970385 TTGCATTCAC
* * * *
45970395 ATTCTG ATTTTG ATTCT- ATTACCTA ATACTG ATTCTG ATTTTG ATTCT-
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * *
45970443 ATTACCTG ATACTG ATTCTG ATTCTG ATTTTG -TCACTTA ATTTTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG
45970494 ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
45970526 AATGTTTCTT
Statistics
Matches: 97, Mismatches: 17, Indels: 22
0.71 0.12 0.16
Matches are distributed among these distances:
5 8 0.08
6 78 0.80
7 6 0.06
8 5 0.05
ACGTcount: A:0.21, C:0.15, G:0.13, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:45970464 original size:37 final size:37
Alignment explanation
Indices: 45970395--45970517 Score: 120
Period size: 37 Copynumber: 3.5 Consensus size: 37
45970385 TTGCATTCAC
45970395 ATTCTGATTTTGATTCTATTACCT-A-A-T-A--CTG
1 ATTCTGATTTTGATTCTATTACCTGATACTGATTCTG
45970426 ATTCTGATTTTGATTCTATTACCTGATACTGATTCTG
1 ATTCTGATTTTGATTCTATTACCTGATACTGATTCTG
** *
45970463 ATTCTGATTTTG--TC-ACTTAATTTTGATTCTGATTCTG
1 ATTCTGATTTTGATTCTA-TT-A-CCTGATACTGATTCTG
*
45970500 ATTCTGATTCTGATTCTA
1 ATTCTGATTTTGATTCTA
45970518 GTTCTGATAA
Statistics
Matches: 76, Mismatches: 4, Indels: 15
0.80 0.04 0.16
Matches are distributed among these distances:
31 24 0.32
32 1 0.01
33 1 0.01
34 2 0.03
35 5 0.07
36 1 0.01
37 39 0.51
39 2 0.03
40 1 0.01
ACGTcount: A:0.22, C:0.15, G:0.12, T:0.50
Consensus pattern (37 bp):
ATTCTGATTTTGATTCTATTACCTGATACTGATTCTG
Found at i:45972001 original size:41 final size:41
Alignment explanation
Indices: 45971956--45972074 Score: 152
Period size: 41 Copynumber: 2.9 Consensus size: 41
45971946 CTTGTATAAA
* * *
45971956 ACACCGGCAC-AGGACCTGCTAGGTAATAAACCTGAT-TCAAT
1 ACACCGGCACAAAG-CCTGCTAGGCAATAAGCCTGATGTC-AT
* *
45971997 ACACCGGCATAAATCCTGCTAGGCAATAAGCCTGATGTCAT
1 ACACCGGCACAAAGCCTGCTAGGCAATAAGCCTGATGTCAT
45972038 ACACCGGCATCAAAGCCTGCTAGGCAATAAGCCTGAT
1 ACACCGGCA-CAAAGCCTGCTAGGCAATAAGCCTGAT
45972075 ATATCACTAT
Statistics
Matches: 68, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
41 40 0.59
42 28 0.41
ACGTcount: A:0.33, C:0.28, G:0.20, T:0.19
Consensus pattern (41 bp):
ACACCGGCACAAAGCCTGCTAGGCAATAAGCCTGATGTCAT
Found at i:45972070 original size:42 final size:41
Alignment explanation
Indices: 45971970--45972074 Score: 158
Period size: 41 Copynumber: 2.5 Consensus size: 41
45971960 CGGCACAGGA
* * *
45971970 CCTGCTAGGTAATAAACCTGATTCAATACACCGGCATAAAT
1 CCTGCTAGGCAATAAGCCTGATTCAATACACCGGCATAAAG
45972011 CCTGCTAGGCAATAAGCCTGATGTC-ATACACCGGCATCAAAG
1 CCTGCTAGGCAATAAGCCTGAT-TCAATACACCGGCAT-AAAG
45972053 CCTGCTAGGCAATAAGCCTGAT
1 CCTGCTAGGCAATAAGCCTGAT
45972075 ATATCACTAT
Statistics
Matches: 59, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
41 32 0.54
42 27 0.46
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (41 bp):
CCTGCTAGGCAATAAGCCTGATTCAATACACCGGCATAAAG
Found at i:45973015 original size:20 final size:21
Alignment explanation
Indices: 45972976--45973029 Score: 83
Period size: 20 Copynumber: 2.6 Consensus size: 21
45972966 TTTGTAATAC
45972976 ATTTATTTAATTATTAAAAGAT
1 ATTTA-TTAATTATTAAAAGAT
*
45972998 ATTTATTATTTA-TAAAAGAT
1 ATTTATTAATTATTAAAAGAT
45973018 ATTTATTAATTA
1 ATTTATTAATTA
45973030 AATAATTATA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 19 0.63
21 6 0.20
22 5 0.17
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (21 bp):
ATTTATTAATTATTAAAAGAT
Found at i:45973127 original size:19 final size:19
Alignment explanation
Indices: 45973099--45973137 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
45973089 TGATCCATGG
*
45973099 ATACATATGTA-ATAATAAT
1 ATACACATGTATA-AATAAT
45973118 ATACACATGTATAAATAAT
1 ATACACATGTATAAATAAT
45973137 A
1 A
45973138 AATAAGTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 17 0.94
20 1 0.06
ACGTcount: A:0.54, C:0.08, G:0.05, T:0.33
Consensus pattern (19 bp):
ATACACATGTATAAATAAT
Found at i:45973265 original size:13 final size:14
Alignment explanation
Indices: 45973233--45973274 Score: 54
Period size: 13 Copynumber: 3.2 Consensus size: 14
45973223 TGAATCAGGG
45973233 GAAGAAAG-AAGGA
1 GAAGAAAGAAAGGA
45973246 GAA-AAAGAAAGGA
1 GAAGAAAGAAAGGA
*
45973259 -AAGAAAGAAAAGA
1 GAAGAAAGAAAGGA
45973272 GAA
1 GAA
45973275 ATTTAAAGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
12 6 0.24
13 17 0.68
14 2 0.08
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (14 bp):
GAAGAAAGAAAGGA
Found at i:45974126 original size:15 final size:14
Alignment explanation
Indices: 45974106--45974147 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
45974096 CGATGAATTT
45974106 ATTGAATTTATATTG
1 ATTGAA-TTATATTG
*
45974121 ATTGAAATTATTTTG
1 ATTG-AATTATATTG
45974136 ATTGAATTATAT
1 ATTGAATTATAT
45974148 AATATATATG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 7 0.29
15 15 0.62
16 2 0.08
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.52
Consensus pattern (14 bp):
ATTGAATTATATTG
Found at i:45974587 original size:21 final size:22
Alignment explanation
Indices: 45974529--45974589 Score: 81
Period size: 21 Copynumber: 2.8 Consensus size: 22
45974519 AGGCATTTTA
45974529 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCG-ATTTCAGGCACCTCG
*
45974552 TGTGTCGA-ATCAGGCACCTCG
1 TGTGTCGATTTCAGGCACCTCG
*
45974573 TGTGTC-ATTTTAGGCAC
1 TGTGTCGATTTCAGGCAC
45974590 TTTATGTGTC
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
20 1 0.03
21 25 0.74
22 1 0.03
23 7 0.21
ACGTcount: A:0.16, C:0.25, G:0.26, T:0.33
Consensus pattern (22 bp):
TGTGTCGATTTCAGGCACCTCG
Found at i:45979346 original size:23 final size:24
Alignment explanation
Indices: 45979302--45979353 Score: 70
Period size: 23 Copynumber: 2.2 Consensus size: 24
45979292 ATTTATATTT
* * *
45979302 ATTAATGTTATTATTATTAAATGA
1 ATTAATATTATTATTATGAAATAA
45979326 ATTAATATTA-TATTATGAAATAA
1 ATTAATATTATTATTATGAAATAA
45979349 ATTAA
1 ATTAA
45979354 ATAAAGACAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
23 16 0.64
24 9 0.36
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.46
Consensus pattern (24 bp):
ATTAATATTATTATTATGAAATAA
Found at i:45979572 original size:19 final size:19
Alignment explanation
Indices: 45979544--45979582 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
45979534 TGATCTATGG
*
45979544 ATACATATGTA-ATAATAAT
1 ATACACATGTATA-AATAAT
45979563 ATACACATGTATAAATAAT
1 ATACACATGTATAAATAAT
45979582 A
1 A
45979583 AATAAGTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 17 0.94
20 1 0.06
ACGTcount: A:0.54, C:0.08, G:0.05, T:0.33
Consensus pattern (19 bp):
ATACACATGTATAAATAAT
Found at i:45979707 original size:13 final size:13
Alignment explanation
Indices: 45979678--45979712 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
45979668 GAAACAGGGG
45979678 AAGAAAG-AAGGA
1 AAGAAAGAAAGGA
*
45979690 GAGAAAGAAAGGA
1 AAGAAAGAAAGGA
45979703 AAGAAAGAAA
1 AAGAAAGAAA
45979713 AGAGAAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
12 6 0.30
13 14 0.70
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (13 bp):
AAGAAAGAAAGGA
Found at i:45980584 original size:15 final size:15
Alignment explanation
Indices: 45980564--45980605 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 15
45980554 CGATGAATTT
45980564 ATTGAATTTATATT-G
1 ATTGAA-TTATATTGG
45980579 ATTGAAATTAT-TTGG
1 ATTG-AATTATATTGG
45980594 ATTGAATTATAT
1 ATTGAATTATAT
45980606 AATATATATG
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
14 8 0.33
15 14 0.58
16 2 0.08
ACGTcount: A:0.36, C:0.00, G:0.14, T:0.50
Consensus pattern (15 bp):
ATTGAATTATATTGG
Found at i:45981044 original size:21 final size:21
Alignment explanation
Indices: 45980986--45981046 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
45980976 AGGCATTTTA
*
45980986 TGTGTCGTATTTTAGGCATCTCG
1 TGTGTCG--TTTTAGGCACCTCG
** *
45981009 TGTGTCGAATCAGGCACCTCG
1 TGTGTCGTTTTAGGCACCTCG
*
45981030 TGTGTTGTTTTAGGCAC
1 TGTGTCGTTTTAGGCAC
45981047 TTTATGTGTC
Statistics
Matches: 30, Mismatches: 8, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
21 23 0.77
23 7 0.23
ACGTcount: A:0.15, C:0.20, G:0.28, T:0.38
Consensus pattern (21 bp):
TGTGTCGTTTTAGGCACCTCG
Found at i:45982092 original size:5 final size:5
Alignment explanation
Indices: 45982082--45982109 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
45982072 ATATAGAGGT
45982082 TAAAA TAAAA TAAAA TAAAA TAAAA TAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAA
45982110 TGGGTGTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
TAAAA
Found at i:45984451 original size:40 final size:40
Alignment explanation
Indices: 45984407--45984590 Score: 164
Period size: 40 Copynumber: 4.6 Consensus size: 40
45984397 GCTACTCGTT
*
45984407 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
* *
45984447 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCACA
* * * *
45984487 TC-AATGCCTTCGGG-CTTAGCCTGG-AATTAGTATCTCGCA
1 -CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCACA
** * * * *
45984526 CAAATGCCTTC-GGATCTTAGTTCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAACTCA-CA
45984567 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
45984591 ACATCATTCG
Statistics
Matches: 116, Mismatches: 18, Indels: 20
0.75 0.12 0.13
Matches are distributed among these distances:
38 3 0.03
39 28 0.24
40 72 0.62
41 13 0.11
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
Found at i:45984552 original size:79 final size:80
Alignment explanation
Indices: 45984409--45984591 Score: 194
Period size: 79 Copynumber: 2.3 Consensus size: 80
45984399 TACTCGTTCA
* *
45984409 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGGAT
* *
45984474 TTAGTAAC-TCGCATC
66 ATAGTAACTTAGCA-C
* * * ***
45984489 AATGCCTTCGGG-CTTAGCCTGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTTCGG
1 AATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCACACAAATGCCTTCGGGA-CTTAACCCGG
* *
45984551 ATATGGTCACTTAGCAC
64 ATATAGTAACTTAGCAC
*
45984568 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
45984592 CATCATTCGA
Statistics
Matches: 85, Mismatches: 14, Indels: 8
0.79 0.13 0.07
Matches are distributed among these distances:
78 4 0.05
79 55 0.65
80 26 0.31
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:45985283 original size:56 final size:56
Alignment explanation
Indices: 45985216--45985391 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
45985206 TATTAGTTTA
*
45985216 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
45985272 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
45985328 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
45985384 TTGCCCAT
1 TTGCCCAT
45985392 CATCCCTTGT
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:45991320 original size:39 final size:40
Alignment explanation
Indices: 45991195--45991379 Score: 193
Period size: 40 Copynumber: 4.7 Consensus size: 40
45991185 GCTACTCGTT
*
45991195 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
45991235 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
45991275 TC-AATGCCTTCGGG-CTTAGCCTGGAATTAGTATA-TCGCA
1 -CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-ACTCGCA
* * * * *
45991314 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
45991355 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
45991380 CATCATTCGA
Statistics
Matches: 121, Mismatches: 15, Indels: 18
0.79 0.10 0.12
Matches are distributed among these distances:
38 3 0.02
39 29 0.24
40 75 0.62
41 14 0.12
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:45992073 original size:56 final size:56
Alignment explanation
Indices: 45992001--45992228 Score: 402
Period size: 56 Copynumber: 4.1 Consensus size: 56
45991991 TATTAGTTTA
* *
45992001 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAAGATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
* * *
45992057 TTGCTCATGCTTCTTATTTTATTTTTCCTTTAACACAACAAGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
*
45992113 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACATAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
45992169 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
45992225 TTGC
1 TTGC
45992229 ACATCATCCC
Statistics
Matches: 162, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 162 1.00
ACGTcount: A:0.23, C:0.21, G:0.10, T:0.47
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:45996588 original size:79 final size:81
Alignment explanation
Indices: 45996479--45996661 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 81
45996469 TACTCGTTCA
* * *
45996479 AATGCCTTCGGGACATAGCCCAG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
45996542 ATTTAGTAAC-TCGCATC
65 ATATAGTAACTTAGCA-C
* **
45996559 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
45996622 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
45996638 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
45996662 CATCATTCGA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 57 0.65
80 28 0.32
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:45996594 original size:39 final size:40
Alignment explanation
Indices: 45996477--45996661 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
45996467 GCTACTCGTT
* *
45996477 CAAATGCCTTCGGGACATAGCCCAG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
45996517 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
45996557 TC-AATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 -CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
45996596 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
45996637 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
45996662 CATCATTCGA
Statistics
Matches: 124, Mismatches: 14, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
38 3 0.02
39 31 0.25
40 76 0.61
41 14 0.11
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:46001795 original size:23 final size:23
Alignment explanation
Indices: 46001775--46001818 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
46001765 CATTCTATTA
46001775 TCATACCCATGCCATTACTATGT
1 TCATACCCATGCCATTACTATGT
* * *
46001798 TCATTCTCATGCTATTACTAT
1 TCATACCCATGCCATTACTAT
46001819 ACTAATGTCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.25, C:0.27, G:0.07, T:0.41
Consensus pattern (23 bp):
TCATACCCATGCCATTACTATGT
Found at i:46011080 original size:40 final size:39
Alignment explanation
Indices: 46010982--46011204 Score: 241
Period size: 40 Copynumber: 5.6 Consensus size: 39
46010972 TCCTCGTTCA
* * * * *
46010982 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* *
46011021 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
46011060 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* *
46011100 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* * * * * *
46011140 AAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCAC
* *
46011181 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
46011205 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 115 0.72
41 8 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
Found at i:46011204 original size:120 final size:119
Alignment explanation
Indices: 46010982--46011204 Score: 272
Period size: 120 Copynumber: 1.9 Consensus size: 119
46010972 TCCTCGTTCA
* * * *
46010982 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
* *
46011047 TAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
66 TAACAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * *
46011101 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGA
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGA-CATAACCCGGA
* *
46011165 TATATTC-ACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
64 TATA-ACAAC-TAGCACGAAAGCCTTCGGGACTTAACCCGGA
46011205 CAGCATTCAA
Statistics
Matches: 87, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
119 37 0.43
120 44 0.51
121 6 0.07
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
TAACAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:46028226 original size:43 final size:43
Alignment explanation
Indices: 46028178--46028285 Score: 137
Period size: 43 Copynumber: 2.5 Consensus size: 43
46028168 GATTGACGAG
*
46028178 ATGTGATTATGTGTAAGACCATGTCTTAGACATTGGCATCATT
1 ATGTGATTATGTGTAAGACCATGTCTGAGACATTGGCATCATT
** * * *
46028221 ATGTGATTACATGTAAGACCATTTCTGGGACATTGGCATTATT
1 ATGTGATTATGTGTAAGACCATGTCTGAGACATTGGCATCATT
*
46028264 ATTTGATT-TCGTGTAAGACCAT
1 ATGTGATTAT-GTGTAAGACCAT
46028286 AGCTAGGCTA
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
43 55 1.00
ACGTcount: A:0.28, C:0.14, G:0.20, T:0.38
Consensus pattern (43 bp):
ATGTGATTATGTGTAAGACCATGTCTGAGACATTGGCATCATT
Found at i:46033663 original size:43 final size:43
Alignment explanation
Indices: 46033527--46033698 Score: 188
Period size: 43 Copynumber: 4.0 Consensus size: 43
46033517 CATAGGATTC
* * *
46033527 CGATATGTGATTTCGTATAACACCATGTCTGGGACGTTGGCAT
1 CGATATTTGATTTCGTGTAAGACCATGTCTGGGACGTTGGCAT
* * * * **
46033570 CGAT-TTGAGATTTACGTGCAAGACCATGTCTAGGACATCAGCAT
1 CGATATT-TGATTT-CGTGTAAGACCATGTCTGGGACGTTGGCAT
*
46033614 C-ATATTTGATTTCGTGTAAGACCCTGTCTGGGACAG-TGGCAT
1 CGATATTTGATTTCGTGTAAGACCATGTCTGGGAC-GTTGGCAT
* *
46033656 CGATATTTGATTACATGTAAGACCATGTCTGGGACGTTGGCAT
1 CGATATTTGATTTCGTGTAAGACCATGTCTGGGACGTTGGCAT
46033699 TCTATGAGCT
Statistics
Matches: 104, Mismatches: 19, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
42 26 0.25
43 52 0.50
44 26 0.25
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (43 bp):
CGATATTTGATTTCGTGTAAGACCATGTCTGGGACGTTGGCAT
Found at i:46037665 original size:13 final size:14
Alignment explanation
Indices: 46037647--46037675 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
46037637 TTTAATATAA
46037647 AATTAGTAT-TTTG
1 AATTAGTATGTTTG
46037660 AATTAGTATGTTTG
1 AATTAGTATGTTTG
46037674 AA
1 AA
46037676 GTGGATTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.34, C:0.00, G:0.17, T:0.48
Consensus pattern (14 bp):
AATTAGTATGTTTG
Found at i:46048535 original size:39 final size:39
Alignment explanation
Indices: 46048492--46048632 Score: 210
Period size: 39 Copynumber: 3.6 Consensus size: 39
46048482 AGCCTGCGGG
*
46048492 ACTTTAGCCCGGATACATTTCCTGCACGAAGCCTACGAA
1 ACTTTAGCCCGGATACATTTCCAGCACGAAGCCTACGAA
* **
46048531 ACTTTAGCCCGGATACATTTCCGGCACGAAGCCTACGGG
1 ACTTTAGCCCGGATACATTTCCAGCACGAAGCCTACGAA
**
46048570 ACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGTGAA
1 ACTTTAGCCCGGATACATTTCCAGCACGAAGCCTACGAA
* *
46048609 ACTTTAACCCAGATACATTTCCAG
1 ACTTTAGCCCGGATACATTTCCAG
46048633 TATCTTGCAT
Statistics
Matches: 92, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 92 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (39 bp):
ACTTTAGCCCGGATACATTTCCAGCACGAAGCCTACGAA
Found at i:46048610 original size:78 final size:78
Alignment explanation
Indices: 46048476--46048630 Score: 247
Period size: 78 Copynumber: 2.0 Consensus size: 78
46048466 TATATTACTA
* * *
46048476 GCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCTGCACGAAGCCTACGAAACTTTAGCCC
1 GCACAAAGCCTACGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTACGAAACTTTAACCC
*
46048541 GGATACATTTCCG
66 AGATACATTTCCG
* **
46048554 GCACGAAGCCTACGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGTGAAACTTTAACCC
1 GCACAAAGCCTACGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTACGAAACTTTAACCC
46048619 AGATACATTTCC
66 AGATACATTTCC
46048631 AGTATCTTGC
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
78 70 1.00
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (78 bp):
GCACAAAGCCTACGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTACGAAACTTTAACCC
AGATACATTTCCG
Found at i:46051494 original size:28 final size:28
Alignment explanation
Indices: 46051454--46051665 Score: 172
Period size: 28 Copynumber: 7.5 Consensus size: 28
46051444 AACCGATCTT
46051454 GCACACACAGTGCTCGGTTACAGAACTC
1 GCACACACAGTGCTCGGTTACAGAACTC
* * **** * *
46051482 GTACACACCGTGCCTCAACAACTGATCTC
1 GCACACACAGTG-CTCGGTTACAGAACTC
46051511 GCACACACAGTGCTCGGTTACAGAACTC
1 GCACACACAGTGCTCGGTTACAGAACTC
* **** * *
46051539 GCACACACACTGCCTCAACAACCGATCTC
1 GCACACACAGTG-CTCGGTTACAGAACTC
**
46051568 GCACACACAGTGCTCGGTTATGGAACTC
1 GCACACACAGTGCTCGGTTACAGAACTC
* **** * *
46051596 ACACACACAGTGCCTCAACAACCGATCTC
1 GCACACACAGTG-CTCGGTTACAGAACTC
*
46051625 GCACACACAGTGCTCGGTTACGGAACTC
1 GCACACACAGTGCTCGGTTACAGAACTC
46051653 GCACACACAGTGC
1 GCACACACAGTGC
46051666 CTATGTTCAC
Statistics
Matches: 135, Mismatches: 46, Indels: 6
0.72 0.25 0.03
Matches are distributed among these distances:
28 74 0.55
29 61 0.45
ACGTcount: A:0.29, C:0.36, G:0.18, T:0.17
Consensus pattern (28 bp):
GCACACACAGTGCTCGGTTACAGAACTC
Found at i:46051515 original size:57 final size:57
Alignment explanation
Indices: 46051424--46051667 Score: 380
Period size: 57 Copynumber: 4.2 Consensus size: 57
46051414 GATCTCATTT
* *
46051424 CACACACTTAGTGCCCCAACAACCGATCTTGCACACACAGTGCTCGGTTACAGAACTCG
1 CACACAC--AGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACAGAACTCG
* * *
46051483 TACACACCGTGCCTCAACAACTGATCTCGCACACACAGTGCTCGGTTACAGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACAGAACTCG
* ** *
46051540 CACACACACTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTATGGAACTCA
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACAGAACTCG
*
46051597 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACAGAACTCG
46051654 CACACACAGTGCCT
1 CACACACAGTGCCT
46051668 ATGTTCACTT
Statistics
Matches: 170, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
57 164 0.96
59 6 0.04
ACGTcount: A:0.29, C:0.36, G:0.17, T:0.18
Consensus pattern (57 bp):
CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACAGAACTCG
Found at i:46051517 original size:29 final size:29
Alignment explanation
Indices: 46051424--46051637 Score: 155
Period size: 29 Copynumber: 7.4 Consensus size: 29
46051414 GATCTCATTT
* *
46051424 CACACACTTAGTGCCCCAACAACCGATCTTG
1 CACACAC--AGTGCCTCAACAACCGATCTCG
**** * *
46051455 CACACACAGTG-CTCGGTTACAGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCG
* * *
46051483 TACACACCGTGCCTCAACAACTGATCTCG
1 CACACACAGTGCCTCAACAACCGATCTCG
**** * *
46051512 CACACACAGTG-CTCGGTTACAGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCG
*
46051540 CACACACACTGCCTCAACAACCGATCTCG
1 CACACACAGTGCCTCAACAACCGATCTCG
**** ** * *
46051569 CACACACAGTG-CTCGGTTATGGAACTCA
1 CACACACAGTGCCTCAACAACCGATCTCG
46051597 CACACACAGTGCCTCAACAACCGATCTCG
1 CACACACAGTGCCTCAACAACCGATCTCG
46051626 CACACACAGTGC
1 CACACACAGTGC
46051638 TCGGTTACGG
Statistics
Matches: 132, Mismatches: 48, Indels: 8
0.70 0.26 0.04
Matches are distributed among these distances:
28 59 0.45
29 66 0.50
31 7 0.05
ACGTcount: A:0.29, C:0.37, G:0.16, T:0.17
Consensus pattern (29 bp):
CACACACAGTGCCTCAACAACCGATCTCG
Found at i:46053975 original size:39 final size:39
Alignment explanation
Indices: 46053926--46054002 Score: 127
Period size: 39 Copynumber: 2.0 Consensus size: 39
46053916 TATATTACTA
*
46053926 GCACAAAGCCTGCAGGACTTTAGCCCGGATACATTTCCT
1 GCACAAAGCCTACAGGACTTTAGCCCGGATACATTTCCT
* *
46053965 GCACGAAGCCTACGGGACTTTAGCCCGGATACATTTCC
1 GCACAAAGCCTACAGGACTTTAGCCCGGATACATTTCC
46054003 AGTATCTTGC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.25, C:0.31, G:0.22, T:0.22
Consensus pattern (39 bp):
GCACAAAGCCTACAGGACTTTAGCCCGGATACATTTCCT
Found at i:46056110 original size:31 final size:31
Alignment explanation
Indices: 46056072--46056135 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
46056062 CCTTTTCATA
46056072 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
** *
46056103 TTTCATATTTCATATTACTGGGCCGGAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
46056134 TT
1 TT
46056136 ACTATAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.22, C:0.23, G:0.17, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:46056399 original size:47 final size:47
Alignment explanation
Indices: 46056341--46056467 Score: 211
Period size: 47 Copynumber: 2.7 Consensus size: 47
46056331 CTGGAGGCCT
*
46056341 AGCCTCTTTAATAACTGGGGCAAAAGCCCTTTTAACAACTGGGGCATA
1 AGCC-CTTTAATAACTGGGGCATAAGCCCTTTTAACAACTGGGGCATA
*
46056389 AGCCCTTTAATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTAATAACTGGGGCATAAGCCCTTTTAACAACTGGGGCATA
46056435 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
1 AGCCC-TTTAATAACTGGGGCATAAGCCCTTTT
46056468 GCACTTCCTC
Statistics
Matches: 75, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
46 22 0.29
47 46 0.61
48 7 0.09
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (47 bp):
AGCCCTTTAATAACTGGGGCATAAGCCCTTTTAACAACTGGGGCATA
Found at i:46056403 original size:23 final size:23
Alignment explanation
Indices: 46056327--46056466 Score: 210
Period size: 24 Copynumber: 6.0 Consensus size: 23
46056317 GCTTTATCGT
*
46056327 ATAACTGGAGGCCT-AGCCTCTTTA
1 ATAACTGG-GGCATAAGCC-CTTTA
*
46056351 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCC-TTTA
*
46056375 ACAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTA
46056398 ATAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTA
46056421 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCC-TTTA
46056445 ATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTT
46056467 TGCACTTCCT
Statistics
Matches: 108, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
23 52 0.48
24 56 0.52
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.26
Consensus pattern (23 bp):
ATAACTGGGGCATAAGCCCTTTA
Found at i:46056542 original size:20 final size:20
Alignment explanation
Indices: 46056517--46056583 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
46056507 TTATGAATAC
46056517 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
46056537 ATCATGTGCATAGCATACAT
1 ATCATGTGCATATCATACAT
*
46056557 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
46056577 ACCATGT
1 ATCATGT
46056584 TTACTAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:46061542 original size:28 final size:28
Alignment explanation
Indices: 46061510--46061579 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
46061500 AATGAGATTG
*
46061510 GCACTAAGTGTGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
*
46061538 GCACTAAGTGTGCGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
46061566 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
46061580 GACTTACTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 37 0.95
29 2 0.05
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:46064503 original size:28 final size:28
Alignment explanation
Indices: 46064471--46064538 Score: 102
Period size: 28 Copynumber: 2.4 Consensus size: 28
46064461 TGAGATTGGA
*
46064471 ACTAAGTGTGCGAGTTTAATT-GTATAGC
1 ACTAAGTGTGCGAGTTTAATTATTA-AGC
*
46064499 ACTAAGTGTGCGAGTTTGATTATTAAGC
1 ACTAAGTGTGCGAGTTTAATTATTAAGC
46064527 ACTAAGTGTGCG
1 ACTAAGTGTGCG
46064539 GACTTACTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
28 35 0.95
29 2 0.05
ACGTcount: A:0.28, C:0.12, G:0.26, T:0.34
Consensus pattern (28 bp):
ACTAAGTGTGCGAGTTTAATTATTAAGC
Found at i:46067476 original size:84 final size:84
Alignment explanation
Indices: 46067335--46067497 Score: 299
Period size: 84 Copynumber: 1.9 Consensus size: 84
46067325 TTTAAGCTCA
*
46067335 AGAGCAAAGGGAAACAAAATCCGATAAAGGGAAGGAAAAAGTAATTGAATAGCCATTGAAGTCGT
1 AGAGCAAAGGGAAACAAAATCCGATAAAGGGAAGGAAAAAGTAATTCAATAGCCATTGAAGTCGT
46067400 TCGACAACATCCGAACTCG
66 TCGACAACATCCGAACTCG
* *
46067419 AGAGCAAAGGGGAACTAAATCCGATAAAGGGAAGGAAAAAGTAATTCAATAGCCATTGAAGTCGT
1 AGAGCAAAGGGAAACAAAATCCGATAAAGGGAAGGAAAAAGTAATTCAATAGCCATTGAAGTCGT
46067484 TCGACAACATCCGA
66 TCGACAACATCCGA
46067498 GGTAAGTCTT
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
84 76 1.00
ACGTcount: A:0.44, C:0.17, G:0.24, T:0.16
Consensus pattern (84 bp):
AGAGCAAAGGGAAACAAAATCCGATAAAGGGAAGGAAAAAGTAATTCAATAGCCATTGAAGTCGT
TCGACAACATCCGAACTCG
Found at i:46068134 original size:56 final size:55
Alignment explanation
Indices: 46068048--46068223 Score: 316
Period size: 56 Copynumber: 3.1 Consensus size: 55
46068038 ACAAGGGATG
*
46068048 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAATATAAAATAAAAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAA-ATAAAATAAGAAGC
46068104 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGG-AAAATAAAATAAGAAGC
46068160 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAA-AATAAAATAAGAAGC
46068216 ATGGGCAA
1 ATGGGCAA
46068224 TAAACTAATA
Statistics
Matches: 117, Mismatches: 1, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
55 2 0.02
56 112 0.96
57 3 0.03
ACGTcount: A:0.45, C:0.09, G:0.22, T:0.23
Consensus pattern (55 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAATAAAATAAGAAGC
Found at i:46069556 original size:40 final size:40
Alignment explanation
Indices: 46069353--46069544 Score: 221
Period size: 40 Copynumber: 4.8 Consensus size: 40
46069343 TCGAATGATG
* * * *
46069353 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
46069393 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
46069433 TCCGGGCTAAG-CCCGAAGGCA-TTGATGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTG-TGCGAGTTACTAAA
* * *
46069472 TCTGGGTTAAGTCCCGAAGGCGTTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
46069512 TCCGGGTTAAGTCCCAAAGGCATTTGTGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
46069545 AGCTATATCC
Statistics
Matches: 130, Mismatches: 16, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 3 0.02
39 30 0.23
40 86 0.66
41 11 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:46069559 original size:79 final size:78
Alignment explanation
Indices: 46069353--46069570 Score: 221
Period size: 79 Copynumber: 2.7 Consensus size: 78
46069343 TCGAATGATG
* * *
46069353 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACCATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAG-TCCGAAGGCAT
*
46069416 TTGTGCGAGATACTAAT
62 TTGTGCGAGATACTAAA
* * *
46069433 TCCGGGCTAAG-CCCGAAGGCA-TTGATGCGAGTTA-CTAAATCTGGGTTAAGTCCCGAAGGCGT
1 TCCGGGCTAAGTCCCGAAGGCATTTG-TGCGAG-TAGCTATATC-CGGTTAAGT-CCGAAGGCAT
*
46069495 TTGTGCGAGTTACTAAA
62 TTGTGCGAGATACTAAA
* * *
46069512 TCCGGGTTAAGTCCCAAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTT-AAGTCCGAAGG
46069571 TACGTGATTT
Statistics
Matches: 115, Mismatches: 13, Indels: 21
0.77 0.09 0.14
Matches are distributed among these distances:
78 1 0.01
79 70 0.61
80 41 0.36
81 3 0.03
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (78 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTGT
GCGAGATACTAAA
Found at i:46075427 original size:56 final size:56
Alignment explanation
Indices: 46075341--46075516 Score: 334
Period size: 56 Copynumber: 3.1 Consensus size: 56
46075331 ACAAGGGATG
46075341 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
46075397 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
* *
46075453 ATGGGCAAAACAAGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
46075509 ATGGGCAA
1 ATGGGCAA
46075517 TAAACTAATA
Statistics
Matches: 118, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 118 1.00
ACGTcount: A:0.46, C:0.09, G:0.23, T:0.22
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:46076727 original size:40 final size:40
Alignment explanation
Indices: 46076643--46076940 Score: 306
Period size: 40 Copynumber: 7.5 Consensus size: 40
46076633 TCGAATGATG
* * * * *
46076643 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
46076683 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
46076723 TCCGGGCTAAG-CCCGAAGGCA-TTGATGCGAGTTACTGAA
1 TCCGGGTTAAGTCCCGAAGGCATTTG-TGCGAGTTACTAAA
*
46076762 TTCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
46076802 TCCGGGTTACGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
46076842 TCCAGGTTATGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
46076883 -CCGGGCTATGTCCCGAAGGCATTTGAT-CGAG-TAGCTATA
1 TCCGGGTTAAGTCCCGAAGGCATTTG-TGCGAGTTA-CTAAA
* *
46076922 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
46076941 TACGTGATTT
Statistics
Matches: 223, Mismatches: 25, Indels: 21
0.83 0.09 0.08
Matches are distributed among these distances:
38 3 0.01
39 44 0.20
40 162 0.73
41 14 0.06
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:46076926 original size:120 final size:119
Alignment explanation
Indices: 46076644--46076907 Score: 311
Period size: 119 Copynumber: 2.2 Consensus size: 119
46076634 CGAATGATGT
* * * * ** *
46076644 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTACG-TCCCGAAGGCATT
* * *
46076707 TGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGATGCGAGTTACTGAAT
64 TGTGCGAGATACTAAATCCAGGCTAAGCCCGAAGGCATTGATGCGAGTTACTGAAA
* *
46076763 TCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTACGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTACGTCCCGAAGGCATTTG
* * *
46076828 TGCGAGTTACTAAATCCAGGTTATGTCCCGAAGGCATTTG-TGCGAGTTACT-ATAA
66 TGCGAGATACTAAATCCAGGCTAAG-CCCGAAGGCA-TTGATGCGAGTTACTGA-AA
*
46076883 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
46076908 ATCGAGTAGC
Statistics
Matches: 122, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
118 1 0.01
119 67 0.55
120 51 0.42
121 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (119 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTACGTCCCGAAGGCATTTG
TGCGAGATACTAAATCCAGGCTAAGCCCGAAGGCATTGATGCGAGTTACTGAAA
Found at i:46078372 original size:40 final size:40
Alignment explanation
Indices: 46078278--46078521 Score: 262
Period size: 40 Copynumber: 6.2 Consensus size: 40
46078268 GGGTGTTACA
* *
46078278 GGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCC-
1 GGCTAAGACCCGAAGGCATTTGTGCTAGTGATTTTATCCG
* *
46078317 GGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCTAGTGATTTTATCCG
* * * *
46078357 GGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATACCCG
1 GGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTTTATCCG
* *
46078397 GGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCTAGTGATTTTATCCG
* * * *
46078437 GGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATACCCG
1 GGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTTTATCCG
* * * * * *
46078477 GGTTAAGACCCGAAGGCAATTGTACTTGTGGTTATATCC-
1 GGCTAAGACCCGAAGGCATTTGTGCTAGTGATTTTATCCG
46078516 GGCTAA
1 GGCTAA
46078522 ATTCCGAAGA
Statistics
Matches: 174, Mismatches: 26, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
39 48 0.28
40 122 0.70
41 4 0.02
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
GGCTAAGACCCGAAGGCATTTGTGCTAGTGATTTTATCCG
Found at i:46078428 original size:80 final size:80
Alignment explanation
Indices: 46078320--46078521 Score: 334
Period size: 80 Copynumber: 2.5 Consensus size: 80
46078310 TTTATCCGGC
* * *
46078320 TAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
46078385 TTGCTATACCCGGGT
66 TTGCTATACCCGGGT
46078400 TAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
46078465 TTGCTATACCCGGGT
66 TTGCTATACCCGGGT
* * * *
46078480 TAAGACCCGAAGGCAATTGTACTTGTGGTTATATCC-GGCTAA
1 TAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAA
46078522 ATTCCGAAGA
Statistics
Matches: 115, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
79 6 0.05
80 109 0.95
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (80 bp):
TAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
TTGCTATACCCGGGT
Found at i:46085309 original size:84 final size:84
Alignment explanation
Indices: 46085194--46085363 Score: 304
Period size: 84 Copynumber: 2.0 Consensus size: 84
46085184 ATCTTCTTTA
* *
46085194 AGCTCAAGAGCAAAGGGGAACTAAATCCGATAAGGGGAAGGAAAAAGTAATTGAATAGCCATTGA
1 AGCTCAAGAGCAAAGGGGAACTAAATCCGATAAAGGGAAGGAAAAAGTAATTCAATAGCCATTGA
46085259 AGTCGTTCGACAACATCCG
66 AGTCGTTCGACAACATCCG
46085278 AGCTCAAGAGCAAAGGGGAACTAAATCCGATAAAGGGAAGGAAAAAGTAATTCAATAGCCATTGA
1 AGCTCAAGAGCAAAGGGGAACTAAATCCGATAAAGGGAAGGAAAAAGTAATTCAATAGCCATTGA
* *
46085343 AGTTGTTCGATAACATCCG
66 AGTCGTTCGACAACATCCG
46085362 AG
1 AG
46085364 GTAAGTCTTC
Statistics
Matches: 82, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
84 82 1.00
ACGTcount: A:0.41, C:0.16, G:0.25, T:0.18
Consensus pattern (84 bp):
AGCTCAAGAGCAAAGGGGAACTAAATCCGATAAAGGGAAGGAAAAAGTAATTCAATAGCCATTGA
AGTCGTTCGACAACATCCG
Found at i:46085661 original size:40 final size:40
Alignment explanation
Indices: 46085605--46085816 Score: 259
Period size: 40 Copynumber: 5.3 Consensus size: 40
46085595 CATTTGAATG
* *
46085605 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * *
46085645 TTATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * *
46085685 TTATCCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
*
46085725 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * * * *
46085765 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
46085805 ATATCC-GGCTAA
1 ATATCCGGGCTAA
46085817 ATTCCGAAGA
Statistics
Matches: 155, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
39 7 0.05
40 145 0.94
41 3 0.02
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
Found at i:46102656 original size:25 final size:24
Alignment explanation
Indices: 46102550--46102670 Score: 183
Period size: 24 Copynumber: 5.0 Consensus size: 24
46102540 GCTTTATCAT
*
46102550 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
46102575 ATAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
46102598 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
46102622 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
46102647 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
46102671 CACTTCCTCC
Statistics
Matches: 90, Mismatches: 3, Indels: 7
0.90 0.03 0.07
Matches are distributed among these distances:
23 18 0.20
24 41 0.46
25 31 0.34
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:46102664 original size:49 final size:48
Alignment explanation
Indices: 46102541--46102670 Score: 183
Period size: 49 Copynumber: 2.6 Consensus size: 48
46102531 AGCATAGCTG
*
46102541 CTTTATCATATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAGCC
1 CTTTATC--ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAGCC
*
46102592 CTTT-TAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCC
1 CTTTATCATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCA-AAGCC
46102640 CTTTATCATAACTGGGGCATAAGCCCTTTTA
1 CTTTATCATAACTGGGGCATAAGCCCTTTTA
46102671 CACTTCCTCC
Statistics
Matches: 73, Mismatches: 3, Indels: 8
0.87 0.04 0.10
Matches are distributed among these distances:
47 22 0.30
48 21 0.29
49 25 0.34
50 1 0.01
51 4 0.05
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (48 bp):
CTTTATCATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAGCC
Found at i:46102744 original size:20 final size:20
Alignment explanation
Indices: 46102719--46102805 Score: 129
Period size: 20 Copynumber: 4.3 Consensus size: 20
46102709 TTATGAATAC
46102719 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
46102739 ATCATGTGCGTATCATACAT
1 ATCATGTGCATATCATACAT
* *
46102759 ATCATGTACATATCATAGAT
1 ATCATGTGCATATCATACAT
*
46102779 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
46102799 ACCATGT
1 ATCATGT
46102806 TTATCAAAAT
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 58 1.00
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:46102768 original size:11 final size:11
Alignment explanation
Indices: 46102719--46102774 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
46102709 TTATGAATAC
*
46102719 ATCATGTGCAT
1 ATCATGTACAT
46102730 ATCA--TACAT
1 ATCATGTACAT
* *
46102739 ATCATGTGCGT
1 ATCATGTACAT
46102750 ATCA--TACAT
1 ATCATGTACAT
46102759 ATCATGTACAT
1 ATCATGTACAT
46102770 ATCAT
1 ATCAT
46102775 AGATGTCATG
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
9 15 0.42
11 21 0.58
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.36
Consensus pattern (11 bp):
ATCATGTACAT
Found at i:46105063 original size:18 final size:17
Alignment explanation
Indices: 46105042--46105075 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
46105032 TAACTTGTTT
*
46105042 ATCAATCTCATTATTCAA
1 ATCAATC-CATAATTCAA
46105060 ATCAATCCATAATTCA
1 ATCAATCCATAATTCA
46105076 TGCTTTGGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.41, C:0.24, G:0.00, T:0.35
Consensus pattern (17 bp):
ATCAATCCATAATTCAA
Found at i:46124355 original size:50 final size:50
Alignment explanation
Indices: 46124280--46124380 Score: 184
Period size: 50 Copynumber: 2.0 Consensus size: 50
46124270 AGAATGCTCA
*
46124280 GTAGTAAACACATGAGCAGAGACACGGCCGTGTGTCTCAGCCGTGTGGAG
1 GTAGTAAACACATGAGCAGAGACACGGCCGTGTGTCTCAGCCGTGTAGAG
*
46124330 GTAGTAAACACATGGGCAGAGACACGGCCGTGTGTCTCAGCCGTGTAGAG
1 GTAGTAAACACATGAGCAGAGACACGGCCGTGTGTCTCAGCCGTGTAGAG
46124380 G
1 G
46124381 CCACGGCCTA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.26, C:0.22, G:0.35, T:0.18
Consensus pattern (50 bp):
GTAGTAAACACATGAGCAGAGACACGGCCGTGTGTCTCAGCCGTGTAGAG
Found at i:46125969 original size:39 final size:39
Alignment explanation
Indices: 46125905--46126051 Score: 231
Period size: 39 Copynumber: 3.8 Consensus size: 39
46125895 TTCGAGCACG
* * *
46125905 TAGCCTGCGGACTTCAAGTCCGGATATATTTCTAGCATA
1 TAGCCTGCGGACCTCATGTCCGGATATATTTCCAGCATA
*
46125944 TAGCCTGCGGACCTCATGTCTGGATATATTTCCAGCATA
1 TAGCCTGCGGACCTCATGTCCGGATATATTTCCAGCATA
* *
46125983 TAGCCTGCGGACCTCATGTCCGGGTATATTCCCAGCATA
1 TAGCCTGCGGACCTCATGTCCGGATATATTTCCAGCATA
*
46126022 TAGCCTGCGGACCTTATGTCCGGATATATT
1 TAGCCTGCGGACCTCATGTCCGGATATATT
46126052 CCCAATATCA
Statistics
Matches: 99, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 99 1.00
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.30
Consensus pattern (39 bp):
TAGCCTGCGGACCTCATGTCCGGATATATTTCCAGCATA
Found at i:46128724 original size:37 final size:37
Alignment explanation
Indices: 46128670--46128754 Score: 125
Period size: 37 Copynumber: 2.3 Consensus size: 37
46128660 TTTGAGTACG
*
46128670 TGTAAGACCATAGCTGGGCTATGGCATCGTAATGACA
1 TGTAAGACCATAGCTGGGCTATGGCATCGTAATCACA
* * * *
46128707 TGTAAGACCATATCTGGGCTATGGCATTGTGATCCCA
1 TGTAAGACCATAGCTGGGCTATGGCATCGTAATCACA
46128744 TGTAAGACCAT
1 TGTAAGACCAT
46128755 GTTTGGGACA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (37 bp):
TGTAAGACCATAGCTGGGCTATGGCATCGTAATCACA
Found at i:46128787 original size:48 final size:48
Alignment explanation
Indices: 46128734--46128914 Score: 254
Period size: 48 Copynumber: 3.8 Consensus size: 48
46128724 GCTATGGCAT
*
46128734 TGTGATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* *
46128782 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATCGGCATTGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* ** * *
46128830 TGTGATCCTATGTAAGACCATGTCTAAGACATGGCTTTGGCATCTATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
** * *
46128878 TGTGATTTCGTGTAAGACCATGCCTGGGACATGGCAT
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCAT
46128915 CGATATGGGA
Statistics
Matches: 115, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 115 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
Found at i:46133488 original size:13 final size:12
Alignment explanation
Indices: 46133450--46133490 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
46133440 CTAAAATATC
*
46133450 AAAAACTAAAAA
1 AAAAATTAAAAA
*
46133462 GAAAATTAAAAA
1 AAAAATTAAAAA
46133474 AAAAATTAACAAA
1 AAAAATTAA-AAA
46133487 AAAA
1 AAAA
46133491 GCCACATGGT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
12 18 0.72
13 7 0.28
ACGTcount: A:0.80, C:0.05, G:0.02, T:0.12
Consensus pattern (12 bp):
AAAAATTAAAAA
Found at i:46134480 original size:19 final size:19
Alignment explanation
Indices: 46134443--46134491 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 19
46134433 TTCCTATTAT
* *
46134443 TTTATTATTTTATTTTTAG
1 TTTATTATTATATTGTTAG
*
46134462 TTTATTATTATCTTGTTAG
1 TTTATTATTATATTGTTAG
* *
46134481 TGTATTCTTAT
1 TTTATTATTAT
46134492 TATGATTATT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.20, C:0.04, G:0.08, T:0.67
Consensus pattern (19 bp):
TTTATTATTATATTGTTAG
Found at i:46136088 original size:33 final size:33
Alignment explanation
Indices: 46136050--46136126 Score: 79
Period size: 33 Copynumber: 2.3 Consensus size: 33
46136040 TAGCTGATTT
*
46136050 TATTTT-TT-TGTCTATTTTCTCTATTCTTTTT-TC
1 TATTTTGTTATGTCT-TTATCT-TATT-TTTTTGTC
*
46136083 TATTTTGTTATTTCTTTATCTTATTTTTTTGTC
1 TATTTTGTTATGTCTTTATCTTATTTTTTTGTC
*
46136116 TATTTTCTTAT
1 TATTTTGTTAT
46136127 TTAGTTTGCT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
32 5 0.13
33 22 0.58
34 7 0.18
35 4 0.11
ACGTcount: A:0.12, C:0.12, G:0.04, T:0.73
Consensus pattern (33 bp):
TATTTTGTTATGTCTTTATCTTATTTTTTTGTC
Found at i:46136097 original size:21 final size:21
Alignment explanation
Indices: 46136049--46136099 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
46136039 TTAGCTGATT
46136049 TTATTT-TTTTGTCTATTTTC
1 TTATTTCTTTTGTCTATTTTC
* *
46136069 TCTA-TTCTTTTTTCTATTTTG
1 T-TATTTCTTTTGTCTATTTTC
46136090 TTATTTCTTT
1 TTATTTCTTT
46136100 ATCTTATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
20 5 0.19
21 21 0.81
ACGTcount: A:0.10, C:0.12, G:0.04, T:0.75
Consensus pattern (21 bp):
TTATTTCTTTTGTCTATTTTC
Found at i:46137013 original size:23 final size:22
Alignment explanation
Indices: 46136987--46137030 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
46136977 ATTTTATTAG
*
46136987 AAAACGAGAAAAAAATTAAAAAA
1 AAAAAGAGAAAAAAA-TAAAAAA
*
46137010 AAAAAGTGAAAAAAATAAAAA
1 AAAAAGAGAAAAAAATAAAAA
46137031 TGAAAAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.80, C:0.02, G:0.09, T:0.09
Consensus pattern (22 bp):
AAAAAGAGAAAAAAATAAAAAA
Found at i:46137022 original size:15 final size:14
Alignment explanation
Indices: 46136995--46137040 Score: 65
Period size: 14 Copynumber: 3.2 Consensus size: 14
46136985 AGAAAACGAG
*
46136995 AAAAAAATTAAAAA
1 AAAAAAATGAAAAA
*
46137009 AAAAAAGTGAAAAA
1 AAAAAAATGAAAAA
46137023 AATAAAAATGAAAAA
1 AA-AAAAATGAAAAA
46137038 AAA
1 AAA
46137041 GAGATTGAGC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
14 15 0.54
15 13 0.46
ACGTcount: A:0.83, C:0.00, G:0.07, T:0.11
Consensus pattern (14 bp):
AAAAAAATGAAAAA
Found at i:46137023 original size:16 final size:15
Alignment explanation
Indices: 46136995--46137040 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
46136985 AGAAAACGAG
*
46136995 AAAAAAAT-TAAAAA
1 AAAAAAATGAAAAAA
*
46137009 AAAAAAGTGAAAAAA
1 AAAAAAATGAAAAAA
*
46137024 ATAAAAATGAAAAAA
1 AAAAAAATGAAAAAA
46137039 AA
1 AA
46137041 GAGATTGAGC
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
14 7 0.27
15 19 0.73
ACGTcount: A:0.83, C:0.00, G:0.07, T:0.11
Consensus pattern (15 bp):
AAAAAAATGAAAAAA
Found at i:46139659 original size:37 final size:37
Alignment explanation
Indices: 46139600--46139701 Score: 177
Period size: 37 Copynumber: 2.8 Consensus size: 37
46139590 AGCTCAGACG
* *
46139600 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
46139637 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
46139674 TAATCTCCACACGTAGTCATCGGGTCTT
1 AAATCTCCACACGTAGTCATCGGGTCTT
46139702 TAGAGCTCGG
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:46139898 original size:47 final size:47
Alignment explanation
Indices: 46139820--46140471 Score: 1043
Period size: 47 Copynumber: 13.6 Consensus size: 47
46139810 CCCTTCGGGA
* * * * * *
46139820 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
46139867 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46139914 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
46139961 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
46140008 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46140055 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
46140102 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
46140151 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46140198 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46140249 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
46140300 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46140349 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
46140396 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46140445 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
46140472 TATTCAAATA
Statistics
Matches: 576, Mismatches: 21, Indels: 16
0.94 0.03 0.03
Matches are distributed among these distances:
47 340 0.59
49 139 0.24
51 97 0.17
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:46140152 original size:96 final size:96
Alignment explanation
Indices: 46139820--46140471 Score: 1082
Period size: 96 Copynumber: 6.8 Consensus size: 96
46139810 CCCTTCGGGA
* * * * * * *
46139820 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
46139883 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
46139914 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
46139977 ACTTTCACATTCATCACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
46140008 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
46140071 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
46140102 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATACAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
46140167 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
46140198 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 CTTATCAC--ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC----AT
46140263 ATATACACTTTCACATTCATCACATCGGCCATTAGGC
60 ATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
46140300 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
46140365 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
46140396 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
46140461 ACTTTCACATT
66 ACTTTCACATT
46140472 TATTCAAATA
Statistics
Matches: 528, Mismatches: 20, Indels: 18
0.93 0.04 0.03
Matches are distributed among these distances:
93 1 0.00
94 183 0.35
96 203 0.38
98 48 0.09
100 47 0.09
102 46 0.09
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:46142617 original size:37 final size:37
Alignment explanation
Indices: 46142567--46142642 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
46142557 AGAAGATGAA
46142567 CATTTTTTTTCTTTTGTTTTCTTCCTTCAATTCACGG
1 CATTTTTTTTCTTTTGTTTTCTTCCTTCAATTCACGG
46142604 CATTTTTTTTCTTTTGTTTTCTTCCTTCAATTCACGG
1 CATTTTTTTTCTTTTGTTTTCTTCCTTCAATTCACGG
46142641 CA
1 CA
46142643 ATGGAGAGGG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.12, C:0.22, G:0.08, T:0.58
Consensus pattern (37 bp):
CATTTTTTTTCTTTTGTTTTCTTCCTTCAATTCACGG
Found at i:46144079 original size:13 final size:13
Alignment explanation
Indices: 46144061--46144100 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
46144051 GTCTATAGAC
46144061 CTCAGATGTGATT
1 CTCAGATGTGATT
46144074 CTCAGATGTGATT
1 CTCAGATGTGATT
*
46144087 CCCAGTAT-TGATT
1 CTCAG-ATGTGATT
46144100 C
1 C
46144101 CTCTTCACTC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 23 0.92
14 2 0.08
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.38
Consensus pattern (13 bp):
CTCAGATGTGATT
Found at i:46155059 original size:29 final size:29
Alignment explanation
Indices: 46155006--46155279 Score: 171
Period size: 29 Copynumber: 9.4 Consensus size: 29
46154996 TCAATGATCA
* * *
46155006 ATGAAAAGGGATAGCTTC-AGGTATCGAAT
1 ATGAAAAGGGATAGTTTCGA-CTATCGATT
* *
46155035 ATGGAAAGGGATAGTTTCGACTATCTATT
1 ATGAAAAGGGATAGTTTCGACTATCGATT
* ** * * * *
46155064 ATGAAAAGGGATGGTGACAACCATCAACT
1 ATGAAAAGGGATAGTTTCGACTATCGATT
* ** * **
46155093 ATGAAAAGGGATGGTGACGACCATCGAAA
1 ATGAAAAGGGATAGTTTCGACTATCGATT
*
46155122 ATGAAAAGGGATAGCTTT-GGCTATCGATT
1 ATGAAAAGGGATAG-TTTCGACTATCGATT
* *
46155151 ATGAAAAAGGATAGCTTC-AGCTATCGATT
1 ATGAAAAGGGATAGTTTCGA-CTATCGATT
* * * *
46155180 ATGAAAGGGGATGGCTTCGGCTATCGATT
1 ATGAAAAGGGATAGTTTCGACTATCGATT
* * **
46155209 ATGAAAAAGGATGGTGACGAGC-ATCGATT
1 ATGAAAAGGGATAGTTTCGA-CTATCGATT
** *
46155238 ATGAAAAGGGATAGTGACGACCATTCG-TT
1 ATGAAAAGGGATAGTTTCGACTA-TCGATT
46155267 AATGAAAAGGGAT
1 -ATGAAAAGGGAT
46155280 GGTTAAGACC
Statistics
Matches: 197, Mismatches: 39, Indels: 17
0.78 0.15 0.07
Matches are distributed among these distances:
28 3 0.02
29 176 0.89
30 18 0.09
ACGTcount: A:0.36, C:0.12, G:0.28, T:0.24
Consensus pattern (29 bp):
ATGAAAAGGGATAGTTTCGACTATCGATT
Found at i:46155154 original size:58 final size:58
Alignment explanation
Indices: 46155006--46155251 Score: 203
Period size: 58 Copynumber: 4.2 Consensus size: 58
46154996 TCAATGATCA
* * * * ** * *
46155006 ATGAAAAGGGATAGCTTCAGG-TATCGAATATGGAAAGGGATAGTTTCGACTATCTATT
1 ATGAAAAGGGATAGCTTC-GGCTATCGATTATGAAAAAGGATGGTGACGACCATCGATT
* * ** * * * * **
46155064 ATGAAAAGGGAT-GGTGACAACCATCAACTATGAAAAGGGATGGTGACGACCATCGAAA
1 ATGAAAAGGGATAGCT-TCGGCTATCGATTATGAAAAAGGATGGTGACGACCATCGATT
* * * *
46155122 ATGAAAAGGGATAGCTTTGGCTATCGATTATGAAAAAGGATAGCT-TC-AGCTATCGATT
1 ATGAAAAGGGATAGCTTCGGCTATCGATTATGAAAAAGGAT-GGTGACGA-CCATCGATT
* * *
46155180 ATGAAAGGGGATGGCTTCGGCTATCGATTATGAAAAAGGATGGTGACGAGCATCGATT
1 ATGAAAAGGGATAGCTTCGGCTATCGATTATGAAAAAGGATGGTGACGACCATCGATT
46155238 ATGAAAAGGGATAG
1 ATGAAAAGGGATAG
46155252 TGACGACCAT
Statistics
Matches: 143, Mismatches: 38, Indels: 14
0.73 0.19 0.07
Matches are distributed among these distances:
57 5 0.03
58 133 0.93
59 5 0.03
ACGTcount: A:0.36, C:0.12, G:0.28, T:0.24
Consensus pattern (58 bp):
ATGAAAAGGGATAGCTTCGGCTATCGATTATGAAAAAGGATGGTGACGACCATCGATT
Found at i:46155206 original size:87 final size:87
Alignment explanation
Indices: 46155006--46155249 Score: 210
Period size: 87 Copynumber: 2.8 Consensus size: 87
46154996 TCAATGATCA
* * *
46155006 ATGAAAAGGGATAGCTTCAGG-TATCGAATATGGAAAGGGATAGTTTCGACTATCTATTATGAAA
1 ATGAAAAGGGATGGCTTC-GGCTATCGAATATGAAAAGGGATAGTTTCGACTATCGATTATGAAA
* *
46155070 AGGGATGGTGACAACCATCAACT
65 AAGGATGCTGACAACCATCAACT
* * * * *
46155093 ATGAAAAGGGATGG-TGACGACCATCGAAAATGAAAAGGGATAGCTTT-GGCTATCGATTATGAA
1 ATGAAAAGGGATGGCT-TCGGCTATCGAATATGAAAAGGGATAG-TTTCGACTATCGATTATGAA
* * * * *
46155156 AAAGGATAGCT-TCAGCTATCGATT
64 AAAGGAT-GCTGACAACCATCAACT
* * * * **
46155180 ATGAAAGGGGATGGCTTCGGCTATCGATTATGAAAAAGGATGGTGACGAGC-ATCGATTATGAAA
1 ATGAAAAGGGATGGCTTCGGCTATCGAATATGAAAAGGGATAGTTTCGA-CTATCGATTATGAAA
*
46155244 AGGGAT
65 AAGGAT
46155250 AGTGACGACC
Statistics
Matches: 123, Mismatches: 27, Indels: 14
0.75 0.16 0.09
Matches are distributed among these distances:
86 3 0.02
87 113 0.92
88 7 0.06
ACGTcount: A:0.36, C:0.12, G:0.28, T:0.24
Consensus pattern (87 bp):
ATGAAAAGGGATGGCTTCGGCTATCGAATATGAAAAGGGATAGTTTCGACTATCGATTATGAAAA
AGGATGCTGACAACCATCAACT
Found at i:46155212 original size:116 final size:116
Alignment explanation
Indices: 46155005--46155251 Score: 293
Period size: 116 Copynumber: 2.1 Consensus size: 116
46154995 ATCAATGATC
* * * *
46155005 AATGAAAAGGGATAGCTTCAGGTATCGAATATGGAAAGGGATAGTTTCGACTATCTATTATGAAA
1 AATGAAAAGGGATAGCTTCAGGTATCGAATATGAAAAAGGATAGCTTCGACTATCGATTATGAAA
*
46155070 AGGGATGGTGACAACCATCAACTATGAAAAGGGATGGTGACGACCATCGAA
66 AGGGATGGTGACAACCATCAACTATGAAAAAGGATGGTGACGACCATCGAA
* *
46155121 AATGAAAAGGGATAGCTT-TGGCTATCGATTATGAAAAAGGATAGCTTC-AGCTATCGATTATGA
1 AATGAAAAGGGATAGCTTCAGG-TATCGAATATGAAAAAGGATAGCTTCGA-CTATCGATTATGA
* * ** * * * * *
46155184 AAGGGGATGGCT-TCGGCTATCGATTATGAAAAAGGATGGTGACGAGCATCGAT
64 AAAGGGATGG-TGACAACCATCAACTATGAAAAAGGATGGTGACGACCATCGAA
*
46155237 TATGAAAAGGGATAG
1 AATGAAAAGGGATAG
46155252 TGACGACCAT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
115 3 0.03
116 107 0.96
117 1 0.01
ACGTcount: A:0.36, C:0.12, G:0.28, T:0.24
Consensus pattern (116 bp):
AATGAAAAGGGATAGCTTCAGGTATCGAATATGAAAAAGGATAGCTTCGACTATCGATTATGAAA
AGGGATGGTGACAACCATCAACTATGAAAAAGGATGGTGACGACCATCGAA
Found at i:46155274 original size:30 final size:29
Alignment explanation
Indices: 46155028--46155322 Score: 170
Period size: 29 Copynumber: 10.1 Consensus size: 29
46155018 AGCTTCAGGT
* * ** *
46155028 ATCGAATATGGAAAGGGATAGTTTCGACT
1 ATCGATTATGAAAAGGGATAGTGACGACC
* * *
46155057 ATCTATTATGAAAAGGGATGGTGACAACC
1 ATCGATTATGAAAAGGGATAGTGACGACC
* * *
46155086 ATCAACTATGAAAAGGGATGGTGACGACC
1 ATCGATTATGAAAAGGGATAGTGACGACC
** ** * *
46155115 ATCGAAAATGAAAAGGGATAGCT-TTGGCT
1 ATCGATTATGAAAAGGGATAG-TGACGACC
* * *
46155144 ATCGATTATGAAAAAGGATAGCT-TC-AGCT
1 ATCGATTATGAAAAGGGATAG-TGACGA-CC
* * * * *
46155173 ATCGATTATGAAAGGGGATGGCT-TCGGCT
1 ATCGATTATGAAAAGGGATAG-TGACGACC
* * *
46155202 ATCGATTATGAAAAAGGATGGTGACGAGC
1 ATCGATTATGAAAAGGGATAGTGACGACC
46155231 ATCGATTATGAAAAGGGATAGTGACGACC
1 ATCGATTATGAAAAGGGATAGTGACGACC
* * *
46155260 ATTCG-TTAATGAAAAGGGATGGTTAAGACC
1 A-TCGATT-ATGAAAAGGGATAGTGACGACC
* ** *
46155290 AAT-GAATATGAAAAGGGACGGTTACGACC
1 -ATCGATTATGAAAAGGGATAGTGACGACC
46155319 ATCG
1 ATCG
46155323 TTTAACACAC
Statistics
Matches: 214, Mismatches: 43, Indels: 18
0.78 0.16 0.07
Matches are distributed among these distances:
28 3 0.01
29 185 0.86
30 25 0.12
31 1 0.00
ACGTcount: A:0.36, C:0.13, G:0.27, T:0.23
Consensus pattern (29 bp):
ATCGATTATGAAAAGGGATAGTGACGACC
Found at i:46169023 original size:40 final size:40
Alignment explanation
Indices: 46168968--46169274 Score: 551
Period size: 40 Copynumber: 7.7 Consensus size: 40
46168958 AACATTGGAT
*
46168968 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
46169008 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
46169048 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
46169088 TGTATCCGGGCTAAGACCCGAAGGCAACTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
** *
46169128 TATATCCGGGCTGTGACCCGAAGGCAATTATGCGAGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
46169168 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
46169208 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
46169248 TATATCCGGGTTAAGACCCGAAGGCAA
1 TATATCCGGGCTAAGACCCGAAGGCAA
46169275 ATGTGTTTGT
Statistics
Matches: 255, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 255 1.00
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.21
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
Found at i:46177704 original size:40 final size:40
Alignment explanation
Indices: 46177649--46177914 Score: 480
Period size: 40 Copynumber: 6.7 Consensus size: 40
46177639 AACATTGGAT
*
46177649 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
46177689 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
46177729 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
46177769 TGTATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
46177809 TATATCCGGGCTATGACCCGAAGGCAATTATGCGAG-TGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
46177848 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
46177888 TATATCCGGGTTATGACCCGAAGGCAA
1 TATATCCGGGCTAAGACCCGAAGGCAA
46177915 ATGTGTTTGT
Statistics
Matches: 218, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
39 38 0.17
40 180 0.83
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
Found at i:46190621 original size:34 final size:34
Alignment explanation
Indices: 46190548--46190634 Score: 95
Period size: 34 Copynumber: 2.6 Consensus size: 34
46190538 TGTACTGAAT
*
46190548 TGGGCTAAGGCCCACACTGATACTATTACCGTAA
1 TGGGCTAAGGCCCACACTGATACTACTACCGTAA
* * * *
46190582 TGGGCTGAGGCCCACACTGATATTGCTACTGTTAA
1 TGGGCTAAGGCCCACACTGATACTACTACCG-TAA
* *
46190617 -GGGCTTAGGCCCAAACTG
1 TGGGCTAAGGCCCACACTG
46190635 TTTGCACTGC
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
34 42 0.93
35 3 0.07
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.24
Consensus pattern (34 bp):
TGGGCTAAGGCCCACACTGATACTACTACCGTAA
Found at i:46199969 original size:22 final size:20
Alignment explanation
Indices: 46199926--46199964 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
46199916 CAATTTAAAA
46199926 TATAAAAATTTATTAATATG
1 TATAAAAATTTATTAATATG
*
46199946 TATATAAATTTATTAATAT
1 TATAAAAATTTATTAATAT
46199965 ATGTAAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (20 bp):
TATAAAAATTTATTAATATG
Found at i:46200087 original size:20 final size:20
Alignment explanation
Indices: 46200062--46200101 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
46200052 AAATATTTTC
46200062 AGTAAATCATTTTCCAGAAA
1 AGTAAATCATTTTCCAGAAA
46200082 AGTAAATCATTTTCCAGAAA
1 AGTAAATCATTTTCCAGAAA
46200102 TCATTTTCTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.15, G:0.10, T:0.30
Consensus pattern (20 bp):
AGTAAATCATTTTCCAGAAA
Found at i:46200115 original size:14 final size:14
Alignment explanation
Indices: 46200085--46200127 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
46200075 CCAGAAAAGT
**
46200085 AAATCATTTTCCAG
1 AAATCATTTTCTGG
46200099 AAATCATTTTCTGG
1 AAATCATTTTCTGG
*
46200113 AAAACATTTTACTGG
1 AAATCATTTT-CTGG
46200128 TAAACAAACA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
14 21 0.84
15 4 0.16
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (14 bp):
AAATCATTTTCTGG
Found at i:46217666 original size:40 final size:40
Alignment explanation
Indices: 46217611--46217828 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
46217601 CGGATGATAA
* * *
46217611 CCGGGCTAAGTCCCGAAGGCGTTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
46217651 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
46217691 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
46217731 CCGGGCCAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
46217771 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCAATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
46217811 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
46217829 TACTTGGTTT
Statistics
Matches: 164, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
39 17 0.10
40 146 0.89
41 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:46236442 original size:147 final size:147
Alignment explanation
Indices: 46236175--46236463 Score: 472
Period size: 147 Copynumber: 2.0 Consensus size: 147
46236165 CGCTAACAGG
*
46236175 TATAAACCAATTTAAATAAATCCCCATTTAAAGATAAAACTTAAAACGACCGAATTACATAATAT
1 TATAAACCAATTTAAATAAATCCCCAATTAAAGATAAAACTTAAAACGACCGAATTACATAATAT
* ** **
46236240 TTAACCCAAATAAAGCTACCATAATTTAAAGGTCCAGTATGTAATATAGTAGTGGTGTGGCCTTT
66 TTAACCCAAATAAAGCTACCATAATTTAAAGATCCAGTACATAATATAACAGTGGTGTGGCCTTT
46236305 CCCGAGTCCCTCGGTGA
131 CCCGAGTCCCTCGGTGA
* *
46236322 TATAAACCAATTTCAATAAATCCCTAATTAAAGATAAAACTTAAAACGGA-CGAATTACATAATA
1 TATAAACCAATTTAAATAAATCCCCAATTAAAGATAAAACTTAAAAC-GACCGAATTACATAATA
* *
46236386 TTTAACGCATATAAAGCTACCATAATTTAAAGATCCAGTACATAATATAACAGTGGTGTGGCCTT
65 TTTAACCCAAATAAAGCTACCATAATTTAAAGATCCAGTACATAATATAACAGTGGTGTGGCCTT
46236451 TCCCGAGTCCCTC
130 TCCCGAGTCCCTC
46236464 ACAGTACTGA
Statistics
Matches: 131, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
147 129 0.98
148 2 0.02
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.28
Consensus pattern (147 bp):
TATAAACCAATTTAAATAAATCCCCAATTAAAGATAAAACTTAAAACGACCGAATTACATAATAT
TTAACCCAAATAAAGCTACCATAATTTAAAGATCCAGTACATAATATAACAGTGGTGTGGCCTTT
CCCGAGTCCCTCGGTGA
Found at i:46240265 original size:22 final size:23
Alignment explanation
Indices: 46240226--46240268 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
46240216 GAGATTCTAC
*
46240226 CCGTCCATCCTCTACACTCCACT
1 CCGTCCAACCTCTACACTCCACT
46240249 CCGTCCAACC-CTACACTCCA
1 CCGTCCAACCTCTACACTCCA
46240269 TGTGGGGATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.21, C:0.53, G:0.05, T:0.21
Consensus pattern (23 bp):
CCGTCCAACCTCTACACTCCACT
Found at i:46245156 original size:24 final size:24
Alignment explanation
Indices: 46245110--46245161 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
46245100 CTTATAAAAC
*
46245110 ATTTTAACATTTAATTCACATATA
1 ATTTTAACATTTAATTCAAATATA
* *
46245134 ATTTT-ACATTTCATTGCAAATATT
1 ATTTTAACATTTAATT-CAAATATA
46245158 ATTT
1 ATTT
46245162 AAACTCAAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 9 0.38
24 15 0.62
ACGTcount: A:0.37, C:0.12, G:0.02, T:0.50
Consensus pattern (24 bp):
ATTTTAACATTTAATTCAAATATA
Found at i:46248214 original size:39 final size:39
Alignment explanation
Indices: 46248157--46248234 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
46248147 ATACATACAA
*
46248157 CTTTCATATTCCTCAATAAAACATCAAAGAATAAACATG
1 CTTTCATATTCCTCAATAAAACATCAAAAAATAAACATG
*
46248196 CTTTCATATTCCTTAATAAAACATCAAAAAATAAACATG
1 CTTTCATATTCCTCAATAAAACATCAAAAAATAAACATG
46248235 GCACACATGG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.47, C:0.19, G:0.04, T:0.29
Consensus pattern (39 bp):
CTTTCATATTCCTCAATAAAACATCAAAAAATAAACATG
Found at i:46267807 original size:6 final size:6
Alignment explanation
Indices: 46267789--46267891 Score: 68
Period size: 6 Copynumber: 16.8 Consensus size: 6
46267779 AAAAAACATT
* * *
46267789 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACACA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * * * *
46267838 ATCAGA ATCAGA ATCAGT ACCAGGTA A-CAGA ATCAAA ATAAGA ATCAGT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA
46267887 ATCAG
1 ATCAG
46267892 GTAACAGAAT
Statistics
Matches: 75, Mismatches: 14, Indels: 16
0.71 0.13 0.15
Matches are distributed among these distances:
5 4 0.05
6 64 0.85
7 5 0.07
8 2 0.03
ACGTcount: A:0.48, C:0.17, G:0.17, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:46267840 original size:37 final size:37
Alignment explanation
Indices: 46267798--46267891 Score: 116
Period size: 37 Copynumber: 2.5 Consensus size: 37
46267788 TATCAGAACT
** *
46267798 AGAATCAGAATCAGAATCAGAATTAGGTGACACAATC
1 AGAATCAGAATCAGAATCAGAACCAGGTAACACAATC
* *
46267835 AGAATCAGAATCAGAATCAGTACCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGAACCAGGTAACACAATC
* * *
46267872 AAAATAAGAATCAGTATCAG
1 AGAATCAGAATCAGAATCAG
46267892 GTAACAGAAT
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 49 1.00
ACGTcount: A:0.48, C:0.16, G:0.18, T:0.18
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCAGAACCAGGTAACACAATC
Found at i:46267869 original size:31 final size:31
Alignment explanation
Indices: 46267834--46267906 Score: 110
Period size: 31 Copynumber: 2.4 Consensus size: 31
46267824 GTGACACAAT
* *
46267834 CAGAATCAGAATCAGAATCAGTACCAGGTAA
1 CAGAATCAAAATAAGAATCAGTACCAGGTAA
*
46267865 CAGAATCAAAATAAGAATCAGTATCAGGTAA
1 CAGAATCAAAATAAGAATCAGTACCAGGTAA
*
46267896 CAGAATAAAAA
1 CAGAATCAAAA
46267907 ATCAGAATGT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.52, C:0.15, G:0.16, T:0.16
Consensus pattern (31 bp):
CAGAATCAAAATAAGAATCAGTACCAGGTAA
Found at i:46268093 original size:27 final size:26
Alignment explanation
Indices: 46268051--46268152 Score: 132
Period size: 27 Copynumber: 3.8 Consensus size: 26
46268041 ACTCAGTTAT
* *
46268051 CAGATATTGTGACAGAGCCACAAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
46268077 CAGATATTTGTGGCAGAGCCACCAGAA
1 CAGATA-TTGTGGCAGAGCCACCAGAA
*
46268104 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
46268132 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
46268153 TTAACAGAAT
Statistics
Matches: 69, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
26 6 0.09
27 55 0.80
28 8 0.12
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.18
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:46268339 original size:22 final size:22
Alignment explanation
Indices: 46268311--46268375 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
46268301 GCAAATACGT
* *
46268311 TTGGCACACATCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
46268333 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
46268355 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
46268376 AAGGTTTTAA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.22, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:46268849 original size:27 final size:27
Alignment explanation
Indices: 46268819--46269016 Score: 261
Period size: 27 Copynumber: 7.3 Consensus size: 27
46268809 TACCCCACAA
* * *
46268819 GGTATCTCGGTAATTCCACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
**
46268846 GGTATTTTAGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * **
46268873 GGCATTGCAATAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
46268900 GGTATTTCGATAATTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
46268927 GGTATTTCGATAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
46268954 GGTATTTCAGTAATTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
46268981 GGTATTCCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
46269008 GGTATTTCG
1 GGTATTTCG
46269017 ATATTTTACA
Statistics
Matches: 150, Mismatches: 21, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 150 1.00
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (27 bp):
GGTATTTCGGTAATTCTACCCTACAGG
Found at i:46269015 original size:81 final size:81
Alignment explanation
Indices: 46268826--46269019 Score: 291
Period size: 81 Copynumber: 2.4 Consensus size: 81
46268816 CAAGGTATCT
* *
46268826 CGGTAATTCCACCCTATAGGGGTATTT-TAGTAATTCTACCCTACAGGGGCATTGCAATAATTCT
1 CGGTAATTCTACCCTATAGGGGTATTTCGA-TAATTCTACCCTACAGGGGCATTGCAATAATTCT
*
46268890 ACCCTACAGGGGTATTT
65 ACCCTACAGGGGTATTC
* * * *
46268907 CGATAATTCTACCCTATAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTA
1 CGGTAATTCTACCCTATAGGGGTATTTCGATAATTCTACCCTACAGGGGCATTGCAATAATTCTA
*
46268972 CCCTATAGGGGTATTC
66 CCCTACAGGGGTATTC
*
46268988 CGGTAATTCTACCCTACAGGGGTATTTCGATA
1 CGGTAATTCTACCCTATAGGGGTATTTCGATA
46269020 TTTTACAAAT
Statistics
Matches: 102, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
81 101 0.99
82 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.33
Consensus pattern (81 bp):
CGGTAATTCTACCCTATAGGGGTATTTCGATAATTCTACCCTACAGGGGCATTGCAATAATTCTA
CCCTACAGGGGTATTC
Found at i:46269056 original size:27 final size:26
Alignment explanation
Indices: 46269019--46269185 Score: 199
Period size: 27 Copynumber: 6.2 Consensus size: 26
46269009 GTATTTCGAT
* *
46269019 ATTTTACAAATCGAGAGTATTTTGATA
1 ATTTTACAAATC-AGGGTATTTTGGTA
*
46269046 ATTTCACAAATCAGGGGTATTTTGGTA
1 ATTTTACAAATCA-GGGTATTTTGGTA
*
46269073 ATTTTACAAGTCAGGGGTATTTTGGTA
1 ATTTTACAAATCA-GGGTATTTTGGTA
* *
46269100 ATTTTACAAACCAGAGGTATTTTAGTA
1 ATTTTACAAATCAG-GGTATTTTGGTA
*
46269127 ATTTTACAAACCAGGGCTATTTTGGTA
1 ATTTTACAAATCAGGG-TATTTTGGTA
**
46269154 ATTTTACTGATCGAGGGTATTTTGGTA
1 ATTTTACAAATC-AGGGTATTTTGGTA
46269181 ATTTT
1 ATTTT
46269186 GTAAACTAAG
Statistics
Matches: 124, Mismatches: 12, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
26 4 0.03
27 116 0.94
28 4 0.03
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.41
Consensus pattern (26 bp):
ATTTTACAAATCAGGGTATTTTGGTA
Found at i:46269136 original size:81 final size:81
Alignment explanation
Indices: 46269004--46269185 Score: 230
Period size: 81 Copynumber: 2.3 Consensus size: 81
46268994 TTCTACCCTA
* * * * *
46269004 CAGGGGTATTTCGAT-ATTTTACAAATCGAGAGTATTTTGATAATTTCACAAATCAGGGGTATTT
1 CAGGGGTATTTTGGTAATTTTACAAACCGAGAGTATTTTGATAATTTCACAAACCAGGGCTATTT
46269068 TGGTAATTTTACA-AGT
66 TGGTAATTTTACAGA-T
*
46269084 CAGGGGTATTTTGGTAATTTTACAAACC-AGAGGTATTTT-AGTAATTTTACAAACCAGGGCTAT
1 CAGGGGTATTTTGGTAATTTTACAAACCGAGA-GTATTTTGA-TAATTTCACAAACCAGGGCTAT
*
46269147 TTTGGTAATTTTACTGAT
64 TTTGGTAATTTTACAGAT
46269165 C-GAGGGTATTTTGGTAATTTT
1 CAG-GGGTATTTTGGTAATTTT
46269186 GTAAACTAAG
Statistics
Matches: 90, Mismatches: 7, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
80 18 0.20
81 71 0.79
82 1 0.01
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (81 bp):
CAGGGGTATTTTGGTAATTTTACAAACCGAGAGTATTTTGATAATTTCACAAACCAGGGCTATTT
TGGTAATTTTACAGAT
Found at i:46269197 original size:27 final size:26
Alignment explanation
Indices: 46269035--46269202 Score: 138
Period size: 27 Copynumber: 6.2 Consensus size: 26
46269025 CAAATCGAGA
* * * *
46269035 GTATTTTGATAATTTCACAAATCAGGG
1 GTATTTTGGTAATTTTATAAA-CAAGG
* * *
46269062 GTATTTTGGTAATTTTACAAGTCAGGG
1 GTATTTTGGTAATTTTATAA-ACAAGG
* *
46269089 GTATTTTGGTAATTTTACAAACCAGAG
1 GTATTTTGGTAATTTTATAAACAAG-G
* * *
46269116 GTATTTTAGTAATTTTACAAACCAGG
1 GTATTTTGGTAATTTTATAAACAAGG
* * *
46269142 GCTATTTTGGTAATTTTACTGATCGAGG
1 G-TATTTTGGTAATTTTA-TAAACAAGG
*
46269170 GTATTTTGGTAATTTTGTAAACTAAGG
1 GTATTTTGGTAATTTTATAAAC-AAGG
46269197 GTATTT
1 GTATTT
46269203 CAATAATTTT
Statistics
Matches: 120, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
26 7 0.06
27 107 0.89
28 6 0.05
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (26 bp):
GTATTTTGGTAATTTTATAAACAAGG
Found at i:46269200 original size:81 final size:81
Alignment explanation
Indices: 46269004--46269212 Score: 223
Period size: 81 Copynumber: 2.6 Consensus size: 81
46268994 TTCTACCCTA
* * * * * *
46269004 CAGGGGTATTTCGAT-ATTTTACAAATCGAGA-GTATTTT-GATAATTTCACAAATCAGGGGTAT
1 CAGGGGTATTTTGGTAATTTTACAAA-CAAGAGGTATTTTAG-TAATTTTACAAACCAGGGCTAT
46269066 TTTGGTAATTTTACAAGT
64 TTTGGTAATTTTACAAGT
*
46269084 CAGGGGTATTTTGGTAATTTTACAAACCAGAGGTATTTTAGTAATTTTACAAACCAGGGCTATTT
1 CAGGGGTATTTTGGTAATTTTACAAACAAGAGGTATTTTAGTAATTTTACAAACCAGGGCTATTT
*
46269149 TGGTAATTTTAC-TGAT
66 TGGTAATTTTACAAG-T
** * *
46269165 C-GAGGGTATTTTGGTAATTTTGTAAACTAAG-GGTATTTCAATAATTTT
1 CAG-GGGTATTTTGGTAATTTTACAAAC-AAGAGGTATTTTAGTAATTTT
46269213 GTAAATCGAG
Statistics
Matches: 111, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
80 19 0.17
81 89 0.80
82 3 0.03
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (81 bp):
CAGGGGTATTTTGGTAATTTTACAAACAAGAGGTATTTTAGTAATTTTACAAACCAGGGCTATTT
TGGTAATTTTACAAGT
Found at i:46269236 original size:27 final size:27
Alignment explanation
Indices: 46269206--46269412 Score: 281
Period size: 27 Copynumber: 7.7 Consensus size: 27
46269196 GGTATTTCAA
*
46269206 TAATTTTGTAAATCGAGGATAAAACGG
1 TAATTTTGTAAATCGAGGGTAAAACGG
* **
46269233 TAATTCTGTAAATCGAGGGTAAAATAG
1 TAATTTTGTAAATCGAGGGTAAAACGG
*
46269260 TAATTTTATAAATCGAGGGTAAAACGG
1 TAATTTTGTAAATCGAGGGTAAAACGG
* *
46269287 TAATTTTGAAAATCGAGGGTAAAATGG
1 TAATTTTGTAAATCGAGGGTAAAACGG
* *
46269314 TAATTCTGTAAATCGAGGGTAAAATGG
1 TAATTTTGTAAATCGAGGGTAAAACGG
* *
46269341 TAATTTTATAAATCGAGGGTAAAACGA
1 TAATTTTGTAAATCGAGGGTAAAACGG
*
46269368 TAATTTTGTAAATCGAGGGTGAAAC-G
1 TAATTTTGTAAATCGAGGGTAAAACGG
* *
46269394 TAATTCTATAAATCGAGGG
1 TAATTTTGTAAATCGAGGG
46269413 CATTTCAGTA
Statistics
Matches: 158, Mismatches: 22, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
26 17 0.11
27 141 0.89
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (27 bp):
TAATTTTGTAAATCGAGGGTAAAACGG
Found at i:46269248 original size:81 final size:81
Alignment explanation
Indices: 46269205--46269412 Score: 328
Period size: 81 Copynumber: 2.6 Consensus size: 81
46269195 GGGTATTTCA
*
46269205 ATAATTTTGTAAATCGAGGATAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTTTATA
1 ATAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTTTATA
*
46269270 AATCGAGGGTAAAACG
66 AATCAAGGGTAAAACG
* * * *
46269286 GTAATTTTGAAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTATA
1 ATAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTTTATA
*
46269351 AATCGAGGGTAAAACG
66 AATCAAGGGTAAAACG
* *
46269367 ATAATTTTGTAAATCGAGGGTGAAAC-GTAATTCTATAAATCGAGGG
1 ATAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGG
46269413 CATTTCAGTA
Statistics
Matches: 117, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
80 19 0.16
81 98 0.84
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (81 bp):
ATAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTTTATA
AATCAAGGGTAAAACG
Done.