Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 145 of 316
Found at i:46271019 original size:25 final size:25
Alignment explanation
Indices: 46270947--46271053 Score: 80
Period size: 25 Copynumber: 4.3 Consensus size: 25
46270937 ACCACAACTA
46270947 GTATGAGCTTACCGATTT-TAGCTC
1 GTATGAGCTTACCGATTTCTAGCTC
* * *
46270971 ATAAGAGCTTACTGA-TTCTCAGCTC
1 GTATGAGCTTACCGATTTCT-AGCTC
* *
46270996 GTATTAGCTTACCAATTTCTAGCTC
1 GTATGAGCTTACCGATTTCTAGCTC
* *
46271021 ATCA-GAGCATT-TCGA-TTCATAGCTC
1 GT-ATGAGC-TTACCGATTTC-TAGCTC
46271046 GTATGAGC
1 GTATGAGC
46271054 ATACATGTAC
Statistics
Matches: 63, Mismatches: 13, Indels: 13
0.71 0.15 0.15
Matches are distributed among these distances:
23 2 0.03
24 17 0.27
25 37 0.59
26 7 0.11
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (25 bp):
GTATGAGCTTACCGATTTCTAGCTC
Found at i:46271028 original size:50 final size:49
Alignment explanation
Indices: 46270947--46271053 Score: 137
Period size: 50 Copynumber: 2.2 Consensus size: 49
46270937 ACCACAACTA
*
46270947 GTATGAGCTTACCGATTTTAGCTCATAAGAGC-TTACTGATTC-TCAGCTC
1 GTATGAGCTTACCAATTTTAGCTCATAAGAGCATTAC-GATTCAT-AGCTC
* * *
46270996 GTATTAGCTTACCAATTTCTAGCTCATCAGAGCATTTCGATTCATAGCTC
1 GTATGAGCTTACCAATTT-TAGCTCATAAGAGCATTACGATTCATAGCTC
46271046 GTATGAGC
1 GTATGAGC
46271054 ATACATGTAC
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
49 16 0.32
50 30 0.60
51 4 0.08
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (49 bp):
GTATGAGCTTACCAATTTTAGCTCATAAGAGCATTACGATTCATAGCTC
Found at i:46274761 original size:17 final size:18
Alignment explanation
Indices: 46274739--46274772 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
46274729 TACATTGAAG
46274739 TGTTTT-ATCGAAAACCT
1 TGTTTTCATCGAAAACCT
*
46274756 TGTTTTCATTGAAAACC
1 TGTTTTCATCGAAAACC
46274773 CTTCTTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (18 bp):
TGTTTTCATCGAAAACCT
Found at i:46275979 original size:29 final size:29
Alignment explanation
Indices: 46275939--46276044 Score: 119
Period size: 28 Copynumber: 3.8 Consensus size: 29
46275929 TTTGGCCCCT
* *
46275939 TTAGG-CCTAATCTCATTCATATGGCCAA
1 TTAGGCCCCAATCACATTCATATGGCCAA
* * *
46275967 TTAGGCCCAAATCACTTTCATATGACCAA
1 TTAGGCCCCAATCACATTCATATGGCCAA
* *
46275996 TT-GGCCCCAATCACATTCATATAGCCCA
1 TTAGGCCCCAATCACATTCATATGGCCAA
*
46276024 TCA-GCCCCAATCACATTCATA
1 TTAGGCCCCAATCACATTCATA
46276045 GTCATGCAAT
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
28 45 0.68
29 21 0.32
ACGTcount: A:0.31, C:0.31, G:0.10, T:0.27
Consensus pattern (29 bp):
TTAGGCCCCAATCACATTCATATGGCCAA
Found at i:46282796 original size:43 final size:44
Alignment explanation
Indices: 46282733--46282818 Score: 138
Period size: 43 Copynumber: 2.0 Consensus size: 44
46282723 ACCAAAATAT
*
46282733 GATATTCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAAC
1 GATATTCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAAC
* *
46282777 GATA-TCGGGCTTTGAGCCTAGTAGGCTATAATGCCGGTGAAA
1 GATATTCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
46282819 TGAAATGTTA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
43 35 0.90
44 4 0.10
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.24
Consensus pattern (44 bp):
GATATTCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAAC
Found at i:46283158 original size:38 final size:38
Alignment explanation
Indices: 46283113--46283330 Score: 312
Period size: 38 Copynumber: 5.7 Consensus size: 38
46283103 GGCTTAAAGA
46283113 CCCGCAGGCTTCGTGCTGGTATTATATTCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATTCGGGTTAAAT
* * *
46283151 CTCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATTCGGGTTAAAT
* * *
46283189 CCCGCAGGCTTCGTGCTGGTAATATATCCGTGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATTCGGGTTAAAT
46283227 CCCGCAGGCTTCGTGCTGGTATTATA-TCTGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATTC-GGGTTAAAT
* **
46283265 CCCACAGGCTTCGTGCTAATATTATATTCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATTCGGGTTAAAT
* * *
46283303 CCCGCAGGCCTAGTACTGGTATTATATT
1 CCCGCAGGCTTCGTGCTGGTATTATATT
46283331 TAGGCCTTAA
Statistics
Matches: 161, Mismatches: 17, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
37 1 0.01
38 158 0.98
39 2 0.01
ACGTcount: A:0.21, C:0.22, G:0.24, T:0.33
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTATTATATTCGGGTTAAAT
Found at i:46283397 original size:45 final size:43
Alignment explanation
Indices: 46283340--46283456 Score: 114
Period size: 45 Copynumber: 2.7 Consensus size: 43
46283330 TTAGGCCTTA
* * * * *
46283340 AGCCTAGAAGGCTATTATGCCGGTGAGAT-ACTATTCGGGCCTTTG
1 AGCCTAGCAGGCTATAATGCCGGTGACATGAC-A-TCGAGCC-TCG
*
46283385 AGCCTAGCAGGCTCTAATGCCGGTGACATGACATCGAGCCTCG
1 AGCCTAGCAGGCTATAATGCCGGTGACATGACATCGAGCCTCG
* *
46283428 AGCCTAGCAGGCGA-AATGCTGGTGA-ATGA
1 AGCCTAGCAGGCTATAATGCCGGTGACATGA
46283457 ATAAAAGTCT
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
41 4 0.06
42 10 0.16
43 14 0.23
44 6 0.10
45 26 0.42
46 2 0.03
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.22
Consensus pattern (43 bp):
AGCCTAGCAGGCTATAATGCCGGTGACATGACATCGAGCCTCG
Found at i:46285712 original size:46 final size:46
Alignment explanation
Indices: 46285642--46285811 Score: 188
Period size: 46 Copynumber: 3.7 Consensus size: 46
46285632 TGTAACCCGC
* *
46285642 CCATAAGTGAACTTGGACTAAACTCAACGAGCTCGGGCATTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCACAT
*
46285688 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C-A-TTCACAT
* * * *
46285738 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCACAT
46285781 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
46285812 TTGGGATGCC
Statistics
Matches: 104, Mismatches: 9, Indels: 22
0.77 0.07 0.16
Matches are distributed among these distances:
42 3 0.03
43 6 0.06
44 1 0.01
46 56 0.54
47 26 0.25
48 1 0.01
49 1 0.01
50 7 0.07
51 3 0.03
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCACAT
Found at i:46285764 original size:93 final size:93
Alignment explanation
Indices: 46285650--46285821 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
46285640 GCCCATAAGT
* *
46285650 GAACTTGGACTAAACTCAACGAGCTCGGGCATTCACATCCATAAGTGAACTCGAACTCAACTCAA
1 GAACTCGGACTAAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGAACTCAACTCAA
46285715 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * * *
46285743 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTAAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGAACTCAACTCAA
* *
46285808 CGAGTTGGGATGCC
66 CGAGCTCGGATGCC
46285822 CAAACATCCT
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTAAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGAACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:46285836 original size:46 final size:46
Alignment explanation
Indices: 46285684--46285836 Score: 116
Period size: 46 Copynumber: 3.3 Consensus size: 46
46285674 TCGGGCATTC
* * * *
46285684 ACATCCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGATGCCTAGTT
1 ACATCC-T-AGTGAACTCGGACTCAACTCAACGAGTTGGGATGCCCA--T
* * * *
46285734 ACATCTCT--CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 ACATC-CTAGTGAACTCGGACTCAACTCAACGAGTT-GG-GATGCCCAT
* * *
46285781 CCAT--AAGTGAACTCGGACTCAACTCAACGAGTTGGGATGCCCAA
1 ACATCCTAGTGAACTCGGACTCAACTCAACGAGTTGGGATGCCCAT
46285825 ACATCCTAGTGA
1 ACATCCTAGTGA
46285837 CATGTCACTT
Statistics
Matches: 79, Mismatches: 17, Indels: 18
0.69 0.15 0.16
Matches are distributed among these distances:
44 8 0.10
45 2 0.03
46 30 0.38
47 27 0.34
48 1 0.01
49 4 0.05
50 6 0.08
51 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
ACATCCTAGTGAACTCGGACTCAACTCAACGAGTTGGGATGCCCAT
Found at i:46289328 original size:43 final size:43
Alignment explanation
Indices: 46289270--46289351 Score: 137
Period size: 43 Copynumber: 1.9 Consensus size: 43
46289260 AATATTATAT
* *
46289270 TCGGGCTTCGGGCCTAGCAGGCTATAATGCTGGTGAAATAGTA
1 TCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATAGTA
*
46289313 TCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAAT
1 TCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAAT
46289352 GAAATGTTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.26
Consensus pattern (43 bp):
TCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATAGTA
Found at i:46289695 original size:38 final size:38
Alignment explanation
Indices: 46289653--46289785 Score: 212
Period size: 38 Copynumber: 3.5 Consensus size: 38
46289643 GACCTACAGA
*
46289653 CTTCGTGCTGGTATTATATCTGGGTTAAATCCCGCAGG
1 CTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGG
*
46289691 CTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGG
1 CTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGG
*
46289729 CTTCGTGCTGGTATTATATCCGGGTTAAATTCCGCAGG
1 CTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGG
* * *
46289767 CCTAGTACTGGTATTATAT
1 CTTCGTGCTGGTATTATAT
46289786 TCAGGCCTTG
Statistics
Matches: 88, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
38 88 1.00
ACGTcount: A:0.20, C:0.21, G:0.25, T:0.34
Consensus pattern (38 bp):
CTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGG
Found at i:46289837 original size:44 final size:44
Alignment explanation
Indices: 46289782--46289912 Score: 153
Period size: 45 Copynumber: 3.0 Consensus size: 44
46289772 TACTGGTATT
* * *
46289782 ATATTCAGGCCTTGAGCCTAGCAGGCTATTATGCCGGTGAGAT-
1 ATATTCGGGCCTTGAGCCTAGCAGGCTATAATGCCGGTGACATG
*
46289825 ACTATTCGGGCCTTTGAGCGTAGCAGGCTATAATGCCGGTGACATG
1 A-TATTCGGGCC-TTGAGCCTAGCAGGCTATAATGCCGGTGACATG
* * *
46289871 ATA-TCGAGCCTCGAGCCTAGCAGGCGA-AATGCCGGTGA-ATG
1 ATATTCGGGCCTTGAGCCTAGCAGGCTATAATGCCGGTGACATG
46289912 A
1 A
46289913 ATAAAAGTCT
Statistics
Matches: 77, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
41 4 0.05
42 11 0.14
43 15 0.19
44 15 0.19
45 31 0.40
46 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.24
Consensus pattern (44 bp):
ATATTCGGGCCTTGAGCCTAGCAGGCTATAATGCCGGTGACATG
Found at i:46291175 original size:28 final size:28
Alignment explanation
Indices: 46291141--46291243 Score: 118
Period size: 28 Copynumber: 3.7 Consensus size: 28
46291131 GGCCCCTTTA
* *
46291141 GGCCC-AATCTCATTCATATGACCCATT
1 GGCCCAAATCACATTCATATGACCCATC
*
46291168 GAGCCCAAATCACTTTCATATGACCCATC
1 G-GCCCAAATCACATTCATATGACCCATC
* * * *
46291197 GGCCCTAATCATATTCATATGGCCTATC
1 GGCCCAAATCACATTCATATGACCCATC
*
46291225 GGCCCCAATCACATTCATA
1 GGCCCAAATCACATTCATA
46291244 GTCTTGCAAT
Statistics
Matches: 64, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.67
29 20 0.31
ACGTcount: A:0.28, C:0.33, G:0.12, T:0.27
Consensus pattern (28 bp):
GGCCCAAATCACATTCATATGACCCATC
Found at i:46291499 original size:24 final size:23
Alignment explanation
Indices: 46291455--46291500 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
46291445 TGTAGCCAAA
* *
46291455 CTTTCGGCTTTTTGGCTTTTTGG
1 CTTTCGGCATTTTGGCATTTTGG
*
46291478 CTTTACGGCATTTTGGGATTTTG
1 CTTT-CGGCATTTTGGCATTTTG
46291501 CCGATCTACT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 4 0.21
24 15 0.79
ACGTcount: A:0.07, C:0.15, G:0.26, T:0.52
Consensus pattern (23 bp):
CTTTCGGCATTTTGGCATTTTGG
Found at i:46294373 original size:18 final size:16
Alignment explanation
Indices: 46294341--46294379 Score: 51
Period size: 18 Copynumber: 2.3 Consensus size: 16
46294331 TTACTAAATA
46294341 AATAATAAAATGTTAT
1 AATAATAAAATGTTAT
*
46294357 TATAATAATATATGTTAT
1 AATAATAA-A-ATGTTAT
46294375 AATAA
1 AATAA
46294380 CATTAAACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
16 7 0.37
17 1 0.05
18 11 0.58
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (16 bp):
AATAATAAAATGTTAT
Found at i:46294941 original size:43 final size:42
Alignment explanation
Indices: 46294893--46295046 Score: 159
Period size: 43 Copynumber: 3.6 Consensus size: 42
46294883 ATAGGATTTC
46294893 CGATATGTGTTCTCGTGTAAGACCATGTCTAGGACGTTGGCAT
1 CGATATGTGTT-TCGTGTAAGACCATGTCTAGGACGTTGGCAT
* * *
46294936 CGATATGTGATTTCGAGTAAGACCATGTCTGGGACATTGGCAT
1 CGATATGTG-TTTCGTGTAAGACCATGTCTAGGACGTTGGCAT
* * *
46294979 CG-TAATTGTGATTCGTGTAAGACCCTGTCTAGGATAG-TGGCAT
1 CGAT-A-TGTGTTTCGTGTAAGACCATGTCTAGGA-CGTTGGCAT
* * *
46295022 CGACATGTGATTACATGTAAGACCA
1 CGATATGTG-TTTCGTGTAAGACCA
46295047 CATTTGGGAT
Statistics
Matches: 91, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
42 5 0.05
43 80 0.88
44 6 0.07
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.31
Consensus pattern (42 bp):
CGATATGTGTTTCGTGTAAGACCATGTCTAGGACGTTGGCAT
Found at i:46307093 original size:27 final size:27
Alignment explanation
Indices: 46307058--46307656 Score: 659
Period size: 27 Copynumber: 22.2 Consensus size: 27
46307048 CCCAAAATGG
* *
46307058 TGACTGAAATACCCCCATAGGGTAAAA
1 TGACCGAAATACCCCTATAGGGTAAAA
* *
46307085 TGACCGAAATACCCCTATAGGATTAAA
1 TGACCGAAATACCCCTATAGGGTAAAA
*
46307112 TGACCGAAATACCCCTGTAGGGTAAAA
1 TGACCGAAATACCCCTATAGGGTAAAA
* * * * *
46307139 TAATCAAAATTCCTCC-ATTGGGTAAAA
1 TGACCGAAATACC-CCTATAGGGTAAAA
** *
46307166 TGACTAAAATACCCCCATAGGGTAAAA
1 TGACCGAAATACCCCTATAGGGTAAAA
*
46307193 TGACCGAAATACCCCTATAGGGTAAAT
1 TGACCGAAATACCCCTATAGGGTAAAA
*
46307220 TGACCGAAATACCCCTGTAGGGTAAAA
1 TGACCGAAATACCCCTATAGGGTAAAA
*
46307247 TGACCAAAATA-CCCTCATAGGGTAAAA
1 TGACCGAAATACCCCT-ATAGGGTAAAA
* *
46307274 TGACCGAAACA-CCCTAGTAGCGTAAAA
1 TGACCGAAATACCCCTA-TAGGGTAAAA
*
46307301 GGACCGAAATA-CCCTATAGGGTAAAA
1 TGACCGAAATACCCCTATAGGGTAAAA
* * *
46307327 GGACTGAAATACCCCTATAGGGTAAAC
1 TGACCGAAATACCCCTATAGGGTAAAA
*
46307354 TGATCGAAATACCCCTATAGGGTAAAA
1 TGACCGAAATACCCCTATAGGGTAAAA
* *
46307381 GGACCGAAAAATACCCCTGTAGGGTAAAA
1 TGACCG--AAATACCCCTATAGGGTAAAA
* * * *
46307410 TAATCTAAATACCCCTATAGAGTAAAA
1 TGACCGAAATACCCCTATAGGGTAAAA
*
46307437 TGACCGAAATACCCCTGTAGGGTAAAA
1 TGACCGAAATACCCCTATAGGGTAAAA
*
46307464 TGACCGAAATACCCCTGTAGGGTAAAA
1 TGACCGAAATACCCCTATAGGGTAAAA
* *
46307491 TGACCTAAATACCTCTATAGGGTAAAA
1 TGACCGAAATACCCCTATAGGGTAAAA
*
46307518 TGATCGAAATACCCC-ATAGGGTAAAA
1 TGACCGAAATACCCCTATAGGGTAAAA
*
46307544 TGACCGAAATACCCCCATAGGGTAAAA
1 TGACCGAAATACCCCTATAGGGTAAAA
* * * * * *
46307571 GGATCAAAATACCCCTCTAAGGTATAA
1 TGACCGAAATACCCCTATAGGGTAAAA
* * * * * *
46307598 TGGCTGTAATACCCCTGTAGTGTATAA
1 TGACCGAAATACCCCTATAGGGTAAAA
* * * *
46307625 TGACTGTAATACCCCTGTAAGGTAAAA
1 TGACCGAAATACCCCTATAGGGTAAAA
46307652 TGACC
1 TGACC
46307657 AATTTTCCCT
Statistics
Matches: 484, Mismatches: 80, Indels: 16
0.83 0.14 0.03
Matches are distributed among these distances:
26 51 0.11
27 409 0.85
28 2 0.00
29 22 0.05
ACGTcount: A:0.40, C:0.21, G:0.18, T:0.21
Consensus pattern (27 bp):
TGACCGAAATACCCCTATAGGGTAAAA
Found at i:46314850 original size:17 final size:17
Alignment explanation
Indices: 46314825--46314858 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
46314815 CGACAACAAC
*
46314825 CTTAGTGCTTTAGCAAT
1 CTTAGTGCTGTAGCAAT
*
46314842 CTTATTGCTGTAGCAAT
1 CTTAGTGCTGTAGCAAT
46314859 AGGTGATTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.41
Consensus pattern (17 bp):
CTTAGTGCTGTAGCAAT
Found at i:46322498 original size:43 final size:43
Alignment explanation
Indices: 46322426--46322565 Score: 131
Period size: 43 Copynumber: 3.3 Consensus size: 43
46322416 ATGTGATATT
* * * *
46322426 GTGTAAGACCATGTCTGAGACCTTAGCATCGATCTGA-GATCAC
1 GTGTAAGACCATGTCTGGGACATTGGCATCGATAT-ATGATCAC
**
46322469 GTGTAAGACCATGTCTGGGACATTGGCATC-ATATATGATTTC
1 GTGTAAGACCATGTCTGGGACATTGGCATCGATATATGATCAC
* * * * * * *
46322511 GTGAAAGACCCTGTCTGGGATAGTGGCATCGATATTTAATAAC
1 GTGTAAGACCATGTCTGGGACATTGGCATCGATATATGATCAC
*
46322554 ATGTAAGACCAT
1 GTGTAAGACCAT
46322566 ATCTAGGATA
Statistics
Matches: 78, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
41 1 0.01
42 33 0.42
43 44 0.56
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACATTGGCATCGATATATGATCAC
Found at i:46327818 original size:29 final size:29
Alignment explanation
Indices: 46327761--46327846 Score: 104
Period size: 29 Copynumber: 3.0 Consensus size: 29
46327751 TACCTGTATC
* *
46327761 TGGCCCATTAAG-CCTAATCATATTCATA
1 TGGCCCATTAGGCCCAAATCATATTCATA
*
46327789 TGGCCCATTAGGCCCAAATCATATTTATA
1 TGGCCCATTAGGCCCAAATCATATTCATA
* * *
46327818 TGGCCCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCATATTCATA
46327846 T
1 T
46327847 TCATGCTCAC
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
28 22 0.44
29 28 0.56
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCATATTCATA
Found at i:46327866 original size:18 final size:17
Alignment explanation
Indices: 46327834--46327876 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
46327824 GTTAGGCCCA
* *
46327834 GTCACATTCATATTCAT
1 GTCACATACAAATTCAT
*
46327851 GCTCACATACAAATTCCT
1 G-TCACATACAAATTCAT
46327869 GTCACATA
1 GTCACATA
46327877 GCATCAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.33, C:0.28, G:0.07, T:0.33
Consensus pattern (17 bp):
GTCACATACAAATTCAT
Found at i:46330097 original size:7 final size:7
Alignment explanation
Indices: 46330087--46330111 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
46330077 ATGAGAGAAT
46330087 GATGAGG
1 GATGAGG
46330094 GATGAGG
1 GATGAGG
46330101 GATGAGG
1 GATGAGG
46330108 GATG
1 GATG
46330112 GTTAAGAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.56, T:0.16
Consensus pattern (7 bp):
GATGAGG
Found at i:46330322 original size:18 final size:18
Alignment explanation
Indices: 46330299--46330333 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
46330289 TGAGACTTGG
46330299 TCAAATGTAAATCTTCGA
1 TCAAATGTAAATCTTCGA
46330317 TCAAATGTAAATCTTCG
1 TCAAATGTAAATCTTCG
46330334 GGCAAATCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.34
Consensus pattern (18 bp):
TCAAATGTAAATCTTCGA
Found at i:46330339 original size:18 final size:18
Alignment explanation
Indices: 46330300--46330340 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
46330290 GAGACTTGGT
*
46330300 CAAATGTAAATCTTCGAT
1 CAAATGTAAATCTTCGAG
*
46330318 CAAATGTAAATCTTCGGG
1 CAAATGTAAATCTTCGAG
46330336 CAAAT
1 CAAAT
46330341 CTCTAATTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.29
Consensus pattern (18 bp):
CAAATGTAAATCTTCGAG
Found at i:46336958 original size:28 final size:28
Alignment explanation
Indices: 46336895--46336959 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 28
46336885 TCAGTGTACG
* *
46336895 AAATATTGAGAATGGCACTTAATGTGCG
1 AAATATTGAGAATGACACTTAATGTGCA
* * *
46336923 AGACATTGAGAATGACACTTAGTGTGCA
1 AAATATTGAGAATGACACTTAATGTGCA
46336951 AAATATTGA
1 AAATATTGA
46336960 ATGATTAAGT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.38, C:0.11, G:0.23, T:0.28
Consensus pattern (28 bp):
AAATATTGAGAATGACACTTAATGTGCA
Found at i:46337104 original size:26 final size:26
Alignment explanation
Indices: 46337068--46337119 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
46337058 ATGGCATTCG
46337068 TGTTGGTGTTATATCCGGGCTAAGTC
1 TGTTGGTGTTATATCCGGGCTAAGTC
46337094 TGTTGGTGTTATATCCGGGCTAAGTC
1 TGTTGGTGTTATATCCGGGCTAAGTC
46337120 CTGAAGGCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.15, C:0.15, G:0.31, T:0.38
Consensus pattern (26 bp):
TGTTGGTGTTATATCCGGGCTAAGTC
Found at i:46337140 original size:65 final size:65
Alignment explanation
Indices: 46337032--46337158 Score: 218
Period size: 65 Copynumber: 2.0 Consensus size: 65
46337022 GACTTTATAA
* * *
46337032 TGGTGTTATATCCGGGCTAAGTCCCGATGGCATTCGTGTTGGTGTTATATCCGGGCTAAGTCTGT
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCATGCTGGTGTTATATCCGGGCTAAGTCTGT
*
46337097 TGGTGTTATATCCGGGCTAAGTCCTGAAGGCATTCATGCTGGTGTTATATCCGGGCTAAGTC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCATGCTGGTGTTATATCCGGGCTAAGTC
46337159 CCGAAGGCAT
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
65 58 1.00
ACGTcount: A:0.17, C:0.19, G:0.30, T:0.34
Consensus pattern (65 bp):
TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCATGCTGGTGTTATATCCGGGCTAAGTCTGT
Found at i:46337151 original size:39 final size:39
Alignment explanation
Indices: 46337097--46337357 Score: 384
Period size: 39 Copynumber: 6.7 Consensus size: 39
46337087 CTAAGTCTGT
* *
46337097 TGGTGTTATATCCGGGCTAAGTCCTGAAGGCATTCATGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
46337136 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
* *
46337175 TGGTG-TATTATCTGGGCTAAGTCCTGAAGGCATTCGTGC
1 TGGTGTTA-TATCCGGGCTAAGTCCCGAAGGCATTCGTGC
*
46337214 TGGTGTTATATCCGGGCTAAGTCCCAAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
*
46337253 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
* *
46337292 TGGTGTTA-ATCCGGGCTAAAGTCCCGCAGGC-TTTGTGC
1 TGGTGTTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGC
*
46337330 TGGTATTATATCCGGGCTTAAAGTCCCG
1 TGGTGTTATATCCGGGC-T-AAGTCCCG
46337358 CATGCTTTGT
Statistics
Matches: 204, Mismatches: 13, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
38 24 0.12
39 168 0.82
40 12 0.06
ACGTcount: A:0.19, C:0.22, G:0.30, T:0.30
Consensus pattern (39 bp):
TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
Found at i:46339989 original size:79 final size:80
Alignment explanation
Indices: 46339845--46340062 Score: 230
Period size: 79 Copynumber: 2.7 Consensus size: 80
46339835 AAATCACGTA
* * * ** * * *
46339845 CCTTCGGAATTTAACCGGATATAGTTACTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTATAG
1 CCTTCGGGACTTAACCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGGAATATAG
46339909 TAACTAGCACAAATG
66 TAACTAGCACAAATG
*
46339924 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGAAT-TA
1 CCTTCGGGACTTAA-CCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGGAATATA
*
46339987 GTAACTCGCACAAATG
65 GTAACTAGCACAAATG
* * * * *
46340003 CCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA-CAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTA-ACCGGATATAGTAAC-TCGCACCAATGCCTTCGGGACTTAGCCCGGA
46340063 CATCATTCGA
Statistics
Matches: 117, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 70 0.60
80 44 0.38
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAACCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGGAATATAG
TAACTAGCACAAATG
Found at i:46340062 original size:40 final size:40
Alignment explanation
Indices: 46339859--46340062 Score: 227
Period size: 40 Copynumber: 5.1 Consensus size: 40
46339849 CGGAATTTAA
* * ** *
46339859 CCGGATATAGTTACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGC
* *
46339899 CCGGTTATAGTAACTAGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGC
* * *
46339939 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGC
* *
46339978 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTAGCACAAATGCCTTCGGGA-CTTAGC
* *
46340018 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TAGCACAAATGCCTTCGGGACTTAGC
46340058 CCGGA
1 CCGGA
46340063 CATCATTCGA
Statistics
Matches: 139, Mismatches: 19, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 93 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGC
Found at i:46341258 original size:56 final size:56
Alignment explanation
Indices: 46341191--46341366 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
46341181 TATTAGTTTA
46341191 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
46341247 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
46341303 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
46341359 TTGCCCAT
1 TTGCCCAT
46341367 CATCCCTTGT
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:46346625 original size:28 final size:28
Alignment explanation
Indices: 46346591--46346655 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
46346581 TCAGTGTACG
* *
46346591 AAATATTGAGAATGGCACTTAATGTGCG
1 AAATATTGAGAATGACACTTAATGTGCA
* *
46346619 AGATATTGAGAATGACACTTAGTGTGCA
1 AAATATTGAGAATGACACTTAATGTGCA
46346647 AAATATTGA
1 AAATATTGA
46346656 ATGATTAAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.38, C:0.09, G:0.23, T:0.29
Consensus pattern (28 bp):
AAATATTGAGAATGACACTTAATGTGCA
Found at i:46346772 original size:39 final size:39
Alignment explanation
Indices: 46346728--46346911 Score: 208
Period size: 39 Copynumber: 4.7 Consensus size: 39
46346718 GACTTTATAA
* * * *
46346728 TGGTGTTATATCCGGGCTAGGTCCCGATGGCATTTGTGT
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
** *
46346767 TGGTGTTATATCCGGGCTAAGTCCTAAAGGCATTCATGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
* *
46346806 TGGTGTTATATCCGAGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
* * *
46346845 TGGTGTTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGA
1 TGGTGTTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGC
* *
46346884 TGGTATTATATCTGGGCTTAAAGTCCCG
1 TGGTGTTATATCCGGGC-T-AAGTCCCG
46346912 CATGCTTTGT
Statistics
Matches: 124, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
39 103 0.83
40 21 0.17
ACGTcount: A:0.19, C:0.21, G:0.29, T:0.32
Consensus pattern (39 bp):
TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
Found at i:46352268 original size:69 final size:70
Alignment explanation
Indices: 46352136--46352268 Score: 205
Period size: 69 Copynumber: 1.9 Consensus size: 70
46352126 TAGTTTATTA
* * * * *
46352136 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
46352201 CTTAG
66 CTTAG
*
46352206 CTAATTAATATGCTGCTGTAATACT-TAGATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
46352269 GTTATGTGCT
Statistics
Matches: 57, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
69 34 0.60
70 23 0.40
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:46354118 original size:48 final size:48
Alignment explanation
Indices: 46354047--46354286 Score: 390
Period size: 48 Copynumber: 5.0 Consensus size: 48
46354037 CACAAGATAA
46354047 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
46354095 AGATATGTATACGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* *
46354143 GGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
*
46354193 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* * * *
46354241 AGATACGTATATGTGGTAAAGCCGAAGGGCTAGTGTGAAGTATGTA
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
46354287 GGAGGTGTGG
Statistics
Matches: 180, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
48 133 0.74
49 4 0.02
50 43 0.24
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.30
Consensus pattern (48 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:46354302 original size:98 final size:96
Alignment explanation
Indices: 46354047--46354286 Score: 390
Period size: 98 Copynumber: 2.5 Consensus size: 96
46354037 CACAAGATAA
*
46354047 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
46354112 AAAGCCGAATGGCTAATGTGAAATATGTATG
66 AAAGCCGAATGGCTAATGTGAAATATGTATG
* *
46354143 GGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATGTATATGTG
*
46354208 GTAAAGCCGAATGGCTAGTGTGAAATATGTATG
64 GTAAAGCCGAATGGCTAATGTGAAATATGTATG
* * * *
46354241 AGATACGTATATGTGGTAAAGCCGAAGGGCTAGTGTGAAGTATGTA
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
46354287 GGAGGTGTGG
Statistics
Matches: 132, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
96 41 0.31
97 4 0.03
98 87 0.66
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.30
Consensus pattern (96 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
AAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:46354478 original size:37 final size:37
Alignment explanation
Indices: 46354426--46354536 Score: 152
Period size: 37 Copynumber: 3.0 Consensus size: 37
46354416 GAAACTTGGG
*
46354426 AATATATTCCAGGTAAGACCCAATGACTACGTGTGGA
1 AATATATTCCGGGTAAGACCCAATGACTACGTGTGGA
*
46354463 AATATATTCCGGGTAAGACCCGATGACTACGTGTGGA
1 AATATATTCCGGGTAAGACCCAATGACTACGTGTGGA
* * * *
46354500 GAT-TTTGTCCGGGTAAGACCCAATAACTTCGTGTGGA
1 AATATAT-TCCGGGTAAGACCCAATGACTACGTGTGGA
46354537 GATTTCATCT
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
36 2 0.03
37 64 0.97
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (37 bp):
AATATATTCCGGGTAAGACCCAATGACTACGTGTGGA
Found at i:46363413 original size:23 final size:23
Alignment explanation
Indices: 46363382--46363437 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 23
46363372 TCCTAAAAAT
* *
46363382 AGTCTAAGA-ACAGAAATAAAGTGA
1 AGTC-AAGATACA-AAAAAAAGTAA
46363406 AGTCAAGATACAAAAAAAAGTAA
1 AGTCAAGATACAAAAAAAAGTAA
46363429 AGTCAAGAT
1 AGTCAAGAT
46363438 CCCCCTTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 22 0.76
24 7 0.24
ACGTcount: A:0.57, C:0.09, G:0.18, T:0.16
Consensus pattern (23 bp):
AGTCAAGATACAAAAAAAAGTAA
Found at i:46376059 original size:40 final size:40
Alignment explanation
Indices: 46375996--46376213 Score: 341
Period size: 40 Copynumber: 5.5 Consensus size: 40
46375986 CGGATGATAA
* *
46375996 CCGGGCTAAGTCCCGAAGACATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
46376036 CCGGGCTAAGTCCCGGAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
46376076 CCGGGCTACGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
46376116 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* **
46376156 CCGGGCTAAGTCCCGAAGGCAGTTAAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
46376196 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
46376214 TACTTGGTTT
Statistics
Matches: 167, Mismatches: 10, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
39 17 0.10
40 150 0.90
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:46378944 original size:22 final size:23
Alignment explanation
Indices: 46378901--46378944 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 23
46378891 TACCAATCAA
* *
46378901 ATCACAACATATAGCATACATTT
1 ATCACAACATAAAACATACATTT
*
46378924 ATCA-AACATAAAACATTCATT
1 ATCACAACATAAAACATACATT
46378945 CTCATAAATT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.48, C:0.20, G:0.02, T:0.30
Consensus pattern (23 bp):
ATCACAACATAAAACATACATTT
Found at i:46382886 original size:28 final size:28
Alignment explanation
Indices: 46382846--46382966 Score: 145
Period size: 28 Copynumber: 4.3 Consensus size: 28
46382836 TTACATGACC
*
46382846 ATGAATGTGATTGGGGCTGATGGGTCAT
1 ATGAATGTGATTGGGGCTGATGGGCCAT
* *
46382874 ATGAATGTGATTGGGGCCGAAGGGCCAT
1 ATGAATGTGATTGGGGCTGATGGGCCAT
* *
46382902 ATGAATGTGATTTGGGCCTAATGGGCCAT
1 ATGAATGTGA-TTGGGGCTGATGGGCCAT
* *
46382931 ATGAATGAGATTGGGTCT-AGTGGGCCAT
1 ATGAATGTGATTGGGGCTGA-TGGGCCAT
*
46382959 ATGCATGT
1 ATGAATGT
46382967 ATGTAGACTT
Statistics
Matches: 80, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
27 1 0.01
28 56 0.70
29 23 0.29
ACGTcount: A:0.24, C:0.12, G:0.36, T:0.29
Consensus pattern (28 bp):
ATGAATGTGATTGGGGCTGATGGGCCAT
Found at i:46385366 original size:40 final size:40
Alignment explanation
Indices: 46385322--46385439 Score: 166
Period size: 40 Copynumber: 3.0 Consensus size: 40
46385312 CCCAGATTTT
*
46385322 ATTCCAGCACGAAGCCTGTAGGTCTTTAAACCCGGATACA
1 ATTCCAGCACGAAGCCTGTGGGTCTTTAAACCCGGATACA
* * * *
46385362 ATTCCAGCA-TATAGCTTGCGGGTCTTTAAACCCGGATACC
1 ATTCCAGCACGA-AGCCTGTGGGTCTTTAAACCCGGATACA
*
46385402 ATTCCAGCACGAAGCCTGTGGGTCTTTAAGCCCGGATA
1 ATTCCAGCACGAAGCCTGTGGGTCTTTAAACCCGGATA
46385440 AACACATCAA
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 65 0.97
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
ATTCCAGCACGAAGCCTGTGGGTCTTTAAACCCGGATACA
Found at i:46392987 original size:40 final size:40
Alignment explanation
Indices: 46392894--46393050 Score: 185
Period size: 40 Copynumber: 4.0 Consensus size: 40
46392884 CGAAACACAT
* * * * *
46392894 TTCTAACACG-AGCCTACAGGTCTTT-AACCCAGATTCTA
1 TTCTAGCACGAAGCCTGCGGGTCTTTAAACCCAGATACAA
*
46392932 TTCCAGCACGAAGCCTGCGGGTCTTTAAACCCAGATACAA
1 TTCTAGCACGAAGCCTGCGGGTCTTTAAACCCAGATACAA
* * *
46392972 TTCTAGCA-TATAGCCTGCGGGTCTTTAAACCCGGATACCA
1 TTCTAGCACGA-AGCCTGCGGGTCTTTAAACCCAGATACAA
* *
46393012 TTCTAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACA
1 TTCTAGCACGAAGCCTGCGGGTCTTTAAACCCAGATACA
46393051 CACATCAAAT
Statistics
Matches: 102, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
38 8 0.08
39 14 0.14
40 79 0.77
41 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.25
Consensus pattern (40 bp):
TTCTAGCACGAAGCCTGCGGGTCTTTAAACCCAGATACAA
Found at i:46395506 original size:108 final size:108
Alignment explanation
Indices: 46395317--46395516 Score: 330
Period size: 108 Copynumber: 1.9 Consensus size: 108
46395307 AACGGTATGG
* *
46395317 AAAATCGAGGGTCAATTTCGGAGCGGCTTCGATCAAATGAGGTCGATATCTTTATGGGCGTAGCT
1 AAAATCGAGGGTCAATTTCGGAGCGACTTCGATCAAATGAGGCCGATATCTTTATGGGCGTAGCT
46395382 GGTGTGGCTCCTTGTAACAACCCTTACACGTTTTTCTAAGCCA
66 GGTGTGGCTCCTTGTAACAACCCTTACACGTTTTTCTAAGCCA
* *
46395425 AAAATCGAGGGTCAA-TTCTGGAGTGACTTCGATCAAATGGGGCCGATATCTTTATGGGCGTAGC
1 AAAATCGAGGGTCAATTTC-GGAGCGACTTCGATCAAATGAGGCCGATATCTTTATGGGCGTAGC
* *
46395489 TGGTGTGGCTCTTTGTAACACCCCTTAC
65 TGGTGTGGCTCCTTGTAACAACCCTTAC
46395517 CGTCGCTGTT
Statistics
Matches: 85, Mismatches: 6, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
107 3 0.04
108 82 0.96
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.29
Consensus pattern (108 bp):
AAAATCGAGGGTCAATTTCGGAGCGACTTCGATCAAATGAGGCCGATATCTTTATGGGCGTAGCT
GGTGTGGCTCCTTGTAACAACCCTTACACGTTTTTCTAAGCCA
Found at i:46397595 original size:54 final size:54
Alignment explanation
Indices: 46397529--46397636 Score: 189
Period size: 54 Copynumber: 2.0 Consensus size: 54
46397519 TAAGCTATGT
* * *
46397529 GAATCTTTGCTTGTATGTGCTAATTAGATATAGATTAAATAAGCATGAAATCGA
1 GAATCTTTGCTTGTATCTACGAATTAGATATAGATTAAATAAGCATGAAATCGA
46397583 GAATCTTTGCTTGTATCTACGAATTAGATATAGATTAAATAAGCATGAAATCGA
1 GAATCTTTGCTTGTATCTACGAATTAGATATAGATTAAATAAGCATGAAATCGA
46397637 ATCATGGCAT
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.38, C:0.10, G:0.18, T:0.34
Consensus pattern (54 bp):
GAATCTTTGCTTGTATCTACGAATTAGATATAGATTAAATAAGCATGAAATCGA
Found at i:46398220 original size:38 final size:38
Alignment explanation
Indices: 46398176--46398336 Score: 166
Period size: 38 Copynumber: 4.2 Consensus size: 38
46398166 GCTTAAAGAT
*
46398176 CCGCAGGCTAT-ATGCTGGAATTACATCCGGGTTAAATC
1 CCGCAGGCT-TCATGCTGGAATTATATCCGGGTTAAATC
*
46398214 CCGCAGGCTTCGTGCT-GATATTATATCCGGGTTAAATC
1 CCGCAGGCTTCATGCTGGA-ATTATATCCGGGTTAAATC
* * * **
46398252 CCGCAGGCTTCGTACTGGTATTATATCCAAGTTAAATC
1 CCGCAGGCTTCATGCTGGAATTATATCCGGGTTAAATC
* * *
46398290 CCGCAGGCTT-AGTGCTGGTATTATATTCGAGCTTAAAGTC
1 CCGCAGGCTTCA-TGCTGGAATTATATCCG-GGTTAAA-TC
46398330 CCGCAGG
1 CCGCAGG
46398337 TTTTGTGCTG
Statistics
Matches: 105, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
37 3 0.03
38 87 0.83
39 6 0.06
40 9 0.09
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.29
Consensus pattern (38 bp):
CCGCAGGCTTCATGCTGGAATTATATCCGGGTTAAATC
Found at i:46398358 original size:40 final size:39
Alignment explanation
Indices: 46398207--46398358 Score: 121
Period size: 38 Copynumber: 3.9 Consensus size: 39
46398197 TACATCCGGG
* * * * * *
46398207 TTAAATCCCGCAGGCTTCGTGCTGATATTATATCCG-GG
1 TTAAATCCCGCAGGCTTAGTGCTGGTACTAGATTCGAGC
* * * * * *
46398245 TTAAATCCCGCAGGCTTCGTACTGGTATTATATCCAAG-
1 TTAAATCCCGCAGGCTTAGTGCTGGTACTAGATTCGAGC
* *
46398283 TTAAATCCCGCAGGCTTAGTGCTGGTATTATATTCGAGC
1 TTAAATCCCGCAGGCTTAGTGCTGGTACTAGATTCGAGC
* *
46398322 TTAAAGTCCCGCAGGTTTTGTGCTGGTGACT-GATTCG
1 TTAAA-TCCCGCAGGCTTAGTGCTGGT-ACTAGATTCG
46398359 GGTTTTAAAC
Statistics
Matches: 99, Mismatches: 11, Indels: 6
0.85 0.09 0.05
Matches are distributed among these distances:
38 67 0.68
39 6 0.06
40 24 0.24
41 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.33
Consensus pattern (39 bp):
TTAAATCCCGCAGGCTTAGTGCTGGTACTAGATTCGAGC
Found at i:46400456 original size:49 final size:49
Alignment explanation
Indices: 46400403--46400577 Score: 235
Period size: 49 Copynumber: 3.5 Consensus size: 49
46400393 CTGGTACGCA
*
46400403 TAGTAGCCTGCATTTAGTACTACACATGCGACCAATTATTC-GGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTA-TCGGGTACACG
* * * * *
46400452 TAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCGGGTACACG
* *
46400503 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCGGGTACACG
*
46400552 TAGTAGCCTACACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
46400578 CGTGACCTCA
Statistics
Matches: 109, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
49 63 0.58
50 8 0.07
51 38 0.35
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCGGGTACACG
Found at i:46400530 original size:100 final size:100
Alignment explanation
Indices: 46400384--46400582 Score: 337
Period size: 100 Copynumber: 2.0 Consensus size: 100
46400374 CAATTGTAGC
* * *
46400384 CAAAGCTATCTGGTACGCATAGTAGCCTGCATTTAGTACTACACATGCGACCAATTAT-TCGGTA
1 CAAAGCTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCT-GGTA
*
46400448 CACGTAGTAGCCTGCACTTAGTACTACACACGTGAT
65 CACGTAGTAGCCTACACTTAGTACTACACACGTGAT
*
46400484 CAAAGTTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTAC
1 CAAAGCTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTAC
46400549 ACGTAGTAGCCTACACTTAGTACTACACACGTGA
66 ACGTAGTAGCCTACACTTAGTACTACACACGTGA
46400583 CCTCACAATA
Statistics
Matches: 93, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
100 92 0.99
101 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (100 bp):
CAAAGCTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTAC
ACGTAGTAGCCTACACTTAGTACTACACACGTGAT
Found at i:46405821 original size:43 final size:43
Alignment explanation
Indices: 46405743--46405905 Score: 118
Period size: 43 Copynumber: 3.8 Consensus size: 43
46405733 AGCTTATACA
***
46405743 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACAAAATCAAATATCG
*
46405786 ATGCC-ACTGTCCCAGACAG-GGTCTTACACAAAATCAAATAT-T
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACAAAATCAAATATCG
** * * * * * ** *
46405828 ATGCTGATGTCCCAAACATAGTCTTACACGTAAATCATAA-GGCA
1 ATGCCAACGTCCCAGACGTGGTCTTACAC-AAAATCA-AATATCG
*
46405872 ATGCCAACGTCCCAGATGTGGTCTTACACTAAAA
1 ATGCCAACGTCCCAGACGTGGTCTTACAC-AAAA
46405906 CACATATTGG
Statistics
Matches: 91, Mismatches: 22, Indels: 13
0.72 0.17 0.10
Matches are distributed among these distances:
42 23 0.25
43 40 0.44
44 28 0.31
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACAAAATCAAATATCG
Found at i:46420341 original size:46 final size:46
Alignment explanation
Indices: 46420291--46420457 Score: 198
Period size: 46 Copynumber: 3.6 Consensus size: 46
46420281 TGGTTGAGCA
46420291 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
46420337 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
**
46420382 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
46420430 CCCGAGCTCGTTGAGTTGAGTCCGAGTT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTT
46420458 TGCTTAGGGG
Statistics
Matches: 102, Mismatches: 10, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 55 0.54
47 29 0.28
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:46420447 original size:93 final size:93
Alignment explanation
Indices: 46420288--46420457 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 93
46420278 GGATGGTTGA
***
46420288 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
46420353 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
46420381 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
46420446 TGAGTCCGAGTT
66 TGAGTCCGAGTT
46420458 TGCTTAGGGG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:46422823 original size:42 final size:42
Alignment explanation
Indices: 46422715--46422859 Score: 152
Period size: 43 Copynumber: 3.4 Consensus size: 42
46422705 AGCTCGTACA
* *
46422715 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACATGAAATCAAATA-CG
* * * *
46422758 ATGCC-ACTGTCCTA-AGCAGGGTCTTATACGAAATCAAATACG
1 ATGCCAAC-GTCCCAGA-CATGGTCTTACATGAAATCAAATACG
*
46422800 ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCATAAGTA-G
1 ATGCCAACGTCCCAGACATGGTCTTACATG-AAATCA-AA-TACG
46422844 ATGCCAACGTCCCAGA
1 ATGCCAACGTCCCAGA
46422860 TGTGATCTTA
Statistics
Matches: 83, Mismatches: 12, Indels: 13
0.77 0.11 0.12
Matches are distributed among these distances:
42 26 0.31
43 37 0.45
44 18 0.22
45 2 0.02
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACATGGTCTTACATGAAATCAAATACG
Found at i:46424645 original size:40 final size:41
Alignment explanation
Indices: 46424601--46424686 Score: 95
Period size: 40 Copynumber: 2.1 Consensus size: 41
46424591 TAAGTTCTAT
* * * * *
46424601 ATATAGCC-GAAGCTATGTTGAATTGCACGCTAAGTGCCAC
1 ATATAGCCTAAAGCTAAGTCGAATCGCACGCTAAATGCCAC
*
46424641 ATATA-CCTAAAGTTAAGTCGAATCGCACGCTAAATGCCAC
1 ATATAGCCTAAAGCTAAGTCGAATCGCACGCTAAATGCCAC
*
46424681 AAATAG
1 ATATAG
46424687 TGAATTTGTC
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
39 2 0.05
40 35 0.95
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.23
Consensus pattern (41 bp):
ATATAGCCTAAAGCTAAGTCGAATCGCACGCTAAATGCCAC
Found at i:46427815 original size:43 final size:42
Alignment explanation
Indices: 46427660--46427816 Score: 113
Period size: 43 Copynumber: 3.7 Consensus size: 42
46427650 TGTGTTATCG
* * *
46427660 TGTAAGACCACATCTGGGACGTTTGCATCGACT-TATGATTTACG
1 TGTAAGACCACATCTGGGACGTTGGCATC-AATAT-TGA-TTACA
* * * * *
46427704 TGTAAGACCACGTTTGGGACATTGGCATC-GTATTTGATTTCA
1 TGTAAGACCACATCTGGGACGTTGGCATCAATA-TTGATTACA
** *** *
46427746 TCCAAGACCTTTTCTGGGATAG-TGGCATCAATATTGGATTACA
1 TGTAAGACCACATCTGGGA-CGTTGGCATCAATATT-GATTACA
46427789 TGTAAGACCACATCTGGGACGTTGGCAT
1 TGTAAGACCACATCTGGGACGTTGGCAT
46427817 TGTACGAGCT
Statistics
Matches: 84, Mismatches: 23, Indels: 13
0.70 0.19 0.11
Matches are distributed among these distances:
42 27 0.32
43 31 0.37
44 26 0.31
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (42 bp):
TGTAAGACCACATCTGGGACGTTGGCATCAATATTGATTACA
Found at i:46433158 original size:27 final size:27
Alignment explanation
Indices: 46433134--46433419 Score: 301
Period size: 27 Copynumber: 10.6 Consensus size: 27
46433124 TTAGTTTACC
** **
46433134 AAATTACCAAAATACCATTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
46433161 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
46433188 AAATTACTAAAATA-CCCTGTGTTTATA
1 AAATTACCAAAATACCCCTG-GTTTGTA
46433215 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
46433242 AAATTACCAAAATACCTCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
46433269 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
46433296 AAATTACCAAAATACCCCTGATTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** * *
46433323 AAATTACTGAAATA-CCCTCGATTTGCA
1 AAATTACCAAAATACCCCT-GGTTTGTA
* * ** * *
46433350 AATTTACCGAAATA-CTATCGATTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
46433376 AAATTACTAAAATA-CCCTCGATTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
* *
46433403 AAATTATCGAAATACCC
1 AAATTACCAAAATACCC
46433420 TCAATTTAGA
Statistics
Matches: 217, Mismatches: 37, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
26 26 0.12
27 184 0.85
28 7 0.03
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:46433193 original size:54 final size:54
Alignment explanation
Indices: 46433134--46433500 Score: 316
Period size: 54 Copynumber: 6.8 Consensus size: 54
46433124 TTAGTTTACC
* * *
46433134 AAATTACCAAAATACCATTGGTTTACAAAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCATTGATTTATAAAATTACCAAAATACCCTC-GATTTGTA
* * *
46433188 AAATTACTAAAATACCCTGTG-TTTATAAAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCAT-TGATTTATAAAATTACCAAAATACCCTC-GATTTGTA
* * * *
46433242 AAATTACCAAAATACC-TCTGGTTTGTAAAATTATCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCAT-TGATTTATAAAATTACCAAAATACCCTCGA-TTTGTA
** * ** *
46433296 AAATTACCAAAATACCCCTGATTTGTAAAATTACTGAAATACCCTCGATTTGCA
1 AAATTACCAAAATACCATTGATTTATAAAATTACCAAAATACCCTCGATTTGTA
* * * * * *
46433350 AATTTACCGAAATACTATCGA-TTGTAAAATTACTAAAATACCCTCGATTTGTA
1 AAATTACCAAAATACCATTGATTTATAAAATTACCAAAATACCCTCGATTTGTA
* * * ** * **
46433403 AAATTATCGAAATACCCTCAATTTAGAAAATTACTGAAATACCCTCGATTTGTA
1 AAATTACCAAAATACCATTGATTTATAAAATTACCAAAATACCCTCGATTTGTA
* * * * *
46433457 AAATTA-CAGAAATACCATCGACTTGTAAAATTATCAAAGTACCC
1 AAATTACCA-AAATACCATTGATTTATAAAATTACCAAAATACCC
46433501 CTAATTTACA
Statistics
Matches: 264, Mismatches: 42, Indels: 14
0.82 0.13 0.04
Matches are distributed among these distances:
53 50 0.19
54 210 0.80
55 4 0.02
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCATTGATTTATAAAATTACCAAAATACCCTCGATTTGTA
Found at i:46433420 original size:27 final size:26
Alignment explanation
Indices: 46433160--46433500 Score: 284
Period size: 27 Copynumber: 12.7 Consensus size: 26
46433150 ATTGGTTTAC
*
46433160 AAAATTACCAAAATACCC-CTGGTTTGT
1 AAAATTA-CAAAATACCCTC-GATTTGT
* *
46433187 AAAATTACTAAAATACCCT-GTGTTTAT
1 AAAATTAC-AAAATACCCTCG-ATTTGT
*
46433214 AAAATTACCAAAATACCC-CTGGTTTGT
1 AAAATTA-CAAAATACCCTC-GATTTGT
*
46433241 AAAATTACCAAAATA-CCTCTGGTTTGT
1 AAAATTA-CAAAATACCCTC-GATTTGT
*
46433268 AAAATTATCAAAATACCC-CTAGTTTGT
1 AAAATTA-CAAAATACCCTCGA-TTTGT
46433295 AAAATTACCAAAATACCC-CTGATTTGT
1 AAAATTA-CAAAATACCCTC-GATTTGT
* *
46433322 AAAATTACTGAAATACCCTCGATTTGC
1 AAAATTAC-AAAATACCCTCGATTTGT
* * **
46433349 AAATTTACCGAAATACTATCGA-TTGT
1 AAAATTA-CAAAATACCCTCGATTTGT
46433375 AAAATTACTAAAATACCCTCGATTTGT
1 AAAATTAC-AAAATACCCTCGATTTGT
* *
46433402 AAAATTATCGAAATACCCTCAATTTAG-
1 AAAATTA-CAAAATACCCTCGATTT-GT
*
46433429 AAAATTACTGAAATACCCTCGATTTGT
1 AAAATTAC-AAAATACCCTCGATTTGT
* *
46433456 AAAATTACAGAAATACCATCGACTTGT
1 AAAATTACA-AAATACCCTCGATTTGT
*
46433483 AAAATTATCAAAGTACCC
1 AAAATTA-CAAAATACCC
46433501 CTAATTTACA
Statistics
Matches: 268, Mismatches: 25, Indels: 42
0.80 0.07 0.13
Matches are distributed among these distances:
25 1 0.00
26 26 0.10
27 230 0.86
28 11 0.04
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.31
Consensus pattern (26 bp):
AAAATTACAAAATACCCTCGATTTGT
Found at i:46433527 original size:81 final size:81
Alignment explanation
Indices: 46433268--46433553 Score: 234
Period size: 81 Copynumber: 3.5 Consensus size: 81
46433258 TCTGGTTTGT
* * *
46433268 AAAATTA-TCAAAATACCC-CTAGTTTGTAAAATTACCA-AAATACC-CCTGATTTGTAAAATTA
1 AAAATTACTC-AAATACCCTCGA-TTTGTAAAATTA-CAGAAATACCATC-GACTTGTAAAATTA
* *
46433329 -CTGAAATACCCTCGATTTGC
62 TC-GAAATACCCTCAATTTAC
* ** * *
46433349 AAATTTAC-CGAAATACTATCGA-TTGTAAAATTACTA-AAATACCCTCGATTTGTAAAATTATC
1 AAAATTACTC-AAATACCCTCGATTTGTAAAATTAC-AGAAATACCATCGACTTGTAAAATTATC
*
46433411 GAAATACCCTCAATTTAG
64 GAAATACCCTCAATTTAC
*
46433429 AAAATTACTGAAATACCCTCGATTTGTAAAATTACAGAAATACCATCGACTTGTAAAATTATC-A
1 AAAATTACTCAAATACCCTCGATTTGTAAAATTACAGAAATACCATCGACTTGTAAAATTATCGA
46433493 AAGTACCC-CTAATTTAC
66 AA-TACCCTC-AATTTAC
* ** ** **
46433510 AGAATTAC-CATTTTACCCTCGATTTACAAAATTATTGAAATACC
1 AAAATTACTCA-AATACCCTCGATTTGTAAAATTACAGAAATACC
46433554 CCTGTAAGGT
Statistics
Matches: 170, Mismatches: 24, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
79 1 0.01
80 71 0.42
81 96 0.56
82 2 0.01
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (81 bp):
AAAATTACTCAAATACCCTCGATTTGTAAAATTACAGAAATACCATCGACTTGTAAAATTATCGA
AATACCCTCAATTTAC
Found at i:46434238 original size:27 final size:27
Alignment explanation
Indices: 46433546--46434228 Score: 828
Period size: 27 Copynumber: 25.3 Consensus size: 27
46433536 CAAAATTATT
*
46433546 GAAATACCCCTGTAAGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
46433573 GAAATACCCTTCT-GGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
**
46433599 GAAATACCCCTGTAGGGTAGAATTATT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
46433626 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
46433653 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
46433680 AAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
46433707 GAAATACCCTTGTAGGGTGGAAATACT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
46433734 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
46433761 AAAATACCCCTGTAGGGTAGAATTGCC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
46433788 AAAATACCCTTGTAGGGTAGAAATACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * **
46433815 AAAATACCTCTGTAGGGTAGATTTATT
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
46433842 GAAATACCCCTATAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
**
46433869 GAAATACCCCTGTAGGGTAGAATTATT
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
46433896 GAAATACCCCTGTAGGATAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
46433923 AAAATACCCTTGTAGGGTTGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
46433950 GAAATACCCTTGTAGGGTAGAAATACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
46433977 GAAATAACCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
46434004 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
46434031 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
46434058 AAAATACCCTTGTAGGGTTGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
46434085 GAAATACCCTTATAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* **
46434112 GAAATACCCCTATAGGGTAGAATTATT
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
46434139 GAAATACCCCTGTAGGATAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
46434166 GAAATACCCTTGTAGGGTAAAAATATC
1 GAAATACCCCTGTAGGGTAGAATTACC
46434193 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
46434220 GAGATACCC
1 GAAATACCC
46434229 TCGTGGGGTA
Statistics
Matches: 571, Mismatches: 84, Indels: 2
0.87 0.13 0.00
Matches are distributed among these distances:
26 22 0.04
27 549 0.96
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:46434725 original size:22 final size:22
Alignment explanation
Indices: 46434673--46434737 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
46434663 TTAAAGCCTT
* *
46434673 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
46434695 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* *
46434717 CTGATTATGGTTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
46434738 ACGTATTTGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:46434926 original size:27 final size:27
Alignment explanation
Indices: 46434896--46434997 Score: 107
Period size: 27 Copynumber: 3.8 Consensus size: 27
46434886 ATTCTGTTAA
* *
46434896 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
46434923 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTATGCCAC-AATATCTGTTTCTG
* * *
46434950 GTGGCTCTGCCACAATATCTATATCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
** * *
46434977 GTGTTTCTGTCACAATATCTG
1 GTGGCTATGCCACAATATCTG
46434998 ATAACTGAGC
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 7 0.11
27 50 0.78
28 7 0.11
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.38
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTGTTTCTG
Found at i:46434991 original size:54 final size:53
Alignment explanation
Indices: 46434896--46434997 Score: 123
Period size: 54 Copynumber: 1.9 Consensus size: 53
46434886 ATTCTGTTAA
* * * *
46434896 GTGGCTTTGCCACATTATCTGTTTCTGGTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCACAATATCTATATCTGGTGGCTATGCCAC-AATATCTGTTCTG
** * *
46434950 GTGGCTCTGCCACAATATCTATATCTGGTGTTTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTATATCTGGTGGCTATGCCACAATATCTG
46434998 ATAACTGAGC
Statistics
Matches: 40, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
53 8 0.20
54 32 0.80
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.38
Consensus pattern (53 bp):
GTGGCTCTGCCACAATATCTATATCTGGTGGCTATGCCACAATATCTGTTCTG
Found at i:46435180 original size:31 final size:32
Alignment explanation
Indices: 46435134--46435199 Score: 107
Period size: 31 Copynumber: 2.1 Consensus size: 32
46435124 TTGCATTCAC
46435134 ATTTTGATTTTTGATTCTATTACCGGATACTG
1 ATTTTGATTTTTGATTCTATTACCGGATACTG
* *
46435166 ATTTTGA-TTTTGATTCTGTTACCTGATACTG
1 ATTTTGATTTTTGATTCTATTACCGGATACTG
46435197 ATT
1 ATT
46435200 CCGATTCTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
31 25 0.78
32 7 0.22
ACGTcount: A:0.21, C:0.12, G:0.15, T:0.52
Consensus pattern (32 bp):
ATTTTGATTTTTGATTCTATTACCGGATACTG
Found at i:46435214 original size:31 final size:31
Alignment explanation
Indices: 46435145--46435215 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 31
46435135 TTTTGATTTT
* ** *
46435145 TGATTCTATTACCGGATACTGATTTTGATTT
1 TGATTCTGTTACCGGATACTGATTCCGATTC
*
46435176 TGATTCTGTTACCTGATACTGATTCCGATTC
1 TGATTCTGTTACCGGATACTGATTCCGATTC
46435207 T-ATTTCTGT
1 TGA-TTCTGT
46435216 CACATAATTT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
30 1 0.03
31 33 0.97
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.48
Consensus pattern (31 bp):
TGATTCTGTTACCGGATACTGATTCCGATTC
Found at i:46436275 original size:30 final size:30
Alignment explanation
Indices: 46436239--46436300 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
46436229 AAGTTCTAGT
46436239 TGAAGTGTGATAGTGATAGTAGGATCAGAG
1 TGAAGTGTGATAGTGATAGTAGGATCAGAG
46436269 TGAAGTGTGATAGTGATAGTAGGATCAGAG
1 TGAAGTGTGATAGTGATAGTAGGATCAGAG
46436299 TG
1 TG
46436301 TGCAGCGGTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.32, C:0.03, G:0.37, T:0.27
Consensus pattern (30 bp):
TGAAGTGTGATAGTGATAGTAGGATCAGAG
Found at i:46437349 original size:80 final size:80
Alignment explanation
Indices: 46437232--46437543 Score: 315
Period size: 80 Copynumber: 3.9 Consensus size: 80
46437222 TTCGTTTACC
* ** *
46437232 AAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCC-CTGGTTTGTAAAATTACCAA
1 AAATTACCAAAATACCC-TCGTTTGTAAAATTACCAAAATACCCTC-GATTTGTAAAATTACCAA
46437296 AATACCCTTGGTTTGTA
64 AATACCCTTGGTTTGTA
* * **
46437313 AAATTATCAAAATACCCTAGTTTGTAAAATTACCAAAATACCC-CTGATTTGTAAAATTACTGAA
1 AAATTACCAAAATACCCTCGTTTGTAAAATTACCAAAATACCCTC-GATTTGTAAAATTACCAAA
* *
46437377 ATACCCTCGATTTGTA
65 ATACCCTTGGTTTGTA
* * * * * * *
46437393 AAATTACCGAAATACCATCGATTGTAAAATTACTAAAATACCCTCGATTGGTAAAATTATCGAAA
1 AAATTACCAAAATACCCTCGTTTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAA
* *
46437458 TA-CCTTCAGTTTGGA
66 TACCCTT-GGTTTGTA
*** ** * *
46437473 AAATTATTGAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCGACTTGTAAAATTATCAAA
1 AAATTACCAAAATACCCTCG-TTTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTACCAAA
*
46437538 GTACCC
65 ATACCC
46437544 CTAATTTACA
Statistics
Matches: 196, Mismatches: 31, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
79 3 0.02
80 133 0.68
81 58 0.30
82 2 0.01
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.31
Consensus pattern (80 bp):
AAATTACCAAAATACCCTCGTTTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAA
TACCCTTGGTTTGTA
Found at i:46437413 original size:27 final size:27
Alignment explanation
Indices: 46437232--46437543 Score: 319
Period size: 27 Copynumber: 11.6 Consensus size: 27
46437222 TTCGTTTACC
* * **
46437232 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
*
46437259 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* *
46437286 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
46437313 AAATTATCAAAATACCCTAG-TTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
46437339 AAATTACCAAAATACCC-CTGATTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
**
46437366 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
46437393 AAATTACCGAAATACCATCGA-TTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
46437419 AAATTACTAAAATACCCTCGATTGGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * * *
46437446 AAATTATCGAAATACCTTC-AGTTTGGA
1 AAATTACCAAAATACCCTCGA-TTTGTA
***
46437473 AAATTATTGAAATACCCTCGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
** *
46437500 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
46437527 AAATTATCAAAGTACCC
1 AAATTACCAAAATACCC
46437544 CTAATTTACA
Statistics
Matches: 246, Mismatches: 31, Indels: 16
0.84 0.11 0.05
Matches are distributed among these distances:
26 47 0.19
27 197 0.80
28 2 0.01
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:46437612 original size:27 final size:27
Alignment explanation
Indices: 46437589--46438428 Score: 1013
Period size: 27 Copynumber: 30.9 Consensus size: 27
46437579 CAAAATTAAT
* * *
46437589 GAAATACCCCTGTAGGGTTGAATTACC
1 GAAATACCCTTGTAGGGTAGAAATACC
*
46437616 GAAATACCCTTGTA-AGTAGAAATACC
1 GAAATACCCTTGTAGGGTAGAAATACC
* * *
46437642 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCTTGTAGGGTAGAAATACC
* * *
46437669 GAAATACCCCTGTAGGGTAGAATTATC
1 GAAATACCCTTGTAGGGTAGAAATACC
*
46437696 GAAATACCCTTGTAGGGGAGAAATACC
1 GAAATACCCTTGTAGGGTAGAAATACC
* *
46437723 GAAATACCCTTGTAGGGTAGAATTACT
1 GAAATACCCTTGTAGGGTAGAAATACC
* * *
46437750 GAAATACCCCTGTAGGGTAGAATTATC
1 GAAATACCCTTGTAGGGTAGAAATACC
*
46437777 TAAATACCCTTGTAGGGTAGAAATACCGAAATACC
1 GAAATACCCTTGTA-GG--G---TA--GAAATACC
* * **
46437812 GAAATACCCCTGTAGGGTAGAATTATT
1 GAAATACCCTTGTAGGGTAGAAATACC
*
46437839 GAAATA-CCTCTGTAGGATAGAAATACC
1 GAAATACCCT-TGTAGGGTAGAAATACC
* *
46437866 GAAATACCCTAGTAGGGTTGAAATACC
1 GAAATACCCTTGTAGGGTAGAAATACC
*
46437893 GAAATACCCTTGTAGGGTTGAAATACC
1 GAAATACCCTTGTAGGGTAGAAATACC
* * *
46437920 GAAATAACCTTGTAGGGTAGAATTACT
1 GAAATACCCTTGTAGGGTAGAAATACC
* * *
46437947 AAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAAATACC
46437974 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCTTGTAGGGTAGAAATACC
* *
46438001 GAAATACCCTTGTAGGGTTGAAATATC
1 GAAATACCCTTGTAGGGTAGAAATACC
*
46438028 GAAATACCCTTGTAGGGTAGAAATACT
1 GAAATACCCTTGTAGGGTAGAAATACC
* * **
46438055 GAAATACCCCTGTAGGGTAGAATTATT
1 GAAATACCCTTGTAGGGTAGAAATACC
*
46438082 GAAATA-CCTCTGTAGGATAGAAATACC
1 GAAATACCCT-TGTAGGGTAGAAATACC
*
46438109 GAAATACCCTTGTAGGGTTGAAATACC
1 GAAATACCCTTGTAGGGTAGAAATACC
46438136 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCTTGTAGGGTAGAAATACC
* * *
46438163 GAAATAACCTTGTAGGGTAGAATTACT
1 GAAATACCCTTGTAGGGTAGAAATACC
* * *
46438190 AAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAAATACC
46438217 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCTTGTAGGGTAGAAATACC
*
46438244 GAAATACCCTTGTAGGGTTGAAATACC
1 GAAATACCCTTGTAGGGTAGAAATACC
46438271 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCTTGTAGGGTAGAAATACC
* * **
46438298 GAAATACCCCTGTAGGGTAGAATTATT
1 GAAATACCCTTGTAGGGTAGAAATACC
* *
46438325 GAAATACCCCTGTAGGATAGAAATACC
1 GAAATACCCTTGTAGGGTAGAAATACC
*
46438352 GAAATACCCTTGTAGGGTAGAAATATC
1 GAAATACCCTTGTAGGGTAGAAATACC
* * * *
46438379 AAAATACCCCTGTCGGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAAATACC
* * *
46438406 GAGATACCCTCGTGGGGTA-AAAT
1 GAAATACCCTTGTAGGGTAGAAAT
46438429 TACCATTTTT
Statistics
Matches: 701, Mismatches: 99, Indels: 27
0.85 0.12 0.03
Matches are distributed among these distances:
26 29 0.04
27 638 0.91
28 8 0.01
29 2 0.00
30 1 0.00
32 1 0.00
33 2 0.00
34 2 0.00
35 18 0.03
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (27 bp):
GAAATACCCTTGTAGGGTAGAAATACC
Found at i:46438894 original size:22 final size:22
Alignment explanation
Indices: 46438866--46438925 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
46438856 GCCTTCTGAT
* *
46438866 TATGGCTTTGTGTCAACCTAGA-
1 TATGGCTCTGTGCCAA-CTAGAC
*
46438888 TATGGCTCTGTGCCAACTTGAC
1 TATGGCTCTGTGCCAACTAGAC
*
46438910 TATGGCTGTGTGCCAA
1 TATGGCTCTGTGCCAA
46438926 ACGTATTTGC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.12
22 29 0.88
ACGTcount: A:0.20, C:0.22, G:0.25, T:0.33
Consensus pattern (22 bp):
TATGGCTCTGTGCCAACTAGAC
Found at i:46439172 original size:27 final size:26
Alignment explanation
Indices: 46439084--46439182 Score: 108
Period size: 27 Copynumber: 3.7 Consensus size: 26
46439074 ATTCTGTTAA
* *
46439084 GTGGCTTTGCCACATTATTTGTTTCTG
1 GTGGCTCTGCCACAATATTTG-TTCTG
* *
46439111 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCAC-AATATTTGTTCTG
46439138 GTGGCTCTGCCACAATATTTGTATCTG
1 GTGGCTCTGCCACAATATTTGT-TCTG
* **
46439165 GTGTCTCTATCACAATAT
1 GTGGCTCTGCCACAATAT
46439183 CTGATAACTG
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 8 0.13
27 48 0.77
28 6 0.10
ACGTcount: A:0.19, C:0.21, G:0.20, T:0.39
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATTTGTTCTG
Found at i:46439179 original size:54 final size:53
Alignment explanation
Indices: 46439084--46439185 Score: 132
Period size: 54 Copynumber: 1.9 Consensus size: 53
46439074 ATTCTGTTAA
* * * *
46439084 GTGGCTTTGCCACATTATTTGTTTCTGGTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCACAATATTTGTATCTGGTGGCTATACCAC-AATATCTGTTCTG
* * *
46439138 GTGGCTCTGCCACAATATTTGTATCTGGTGTCTCTATCACAATATCTG
1 GTGGCTCTGCCACAATATTTGTATCTGGTGGCTATACCACAATATCTG
46439186 ATAACTGAGC
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
53 8 0.20
54 33 0.80
ACGTcount: A:0.19, C:0.22, G:0.21, T:0.39
Consensus pattern (53 bp):
GTGGCTCTGCCACAATATTTGTATCTGGTGGCTATACCACAATATCTGTTCTG
Found at i:46439391 original size:6 final size:6
Alignment explanation
Indices: 46439345--46439478 Score: 87
Period size: 6 Copynumber: 21.8 Consensus size: 6
46439335 ATTCTGTTAC
* * * *
46439345 CTGATA CTGATT CTAATT TTGATT CTG-TT ACCTGATA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* * * * *
46439394 TTGATT CTG-TT ACCTGATA CTGATT CCGATT CTGATT CTG-TCAC CTAATT
1 CTGATT CTGATT --CTGATT CTGATT CTGATT CTGATT CTGAT--T CTGATT
*
46439444 CTGATT CTGATT CTGATT TTGATT CT-AGTT CTGAT
1 CTGATT CTGATT CTGATT CTGATT CTGA-TT CTGAT
46439479 AATGTTTCTT
Statistics
Matches: 98, Mismatches: 19, Indels: 22
0.71 0.14 0.16
Matches are distributed among these distances:
5 6 0.06
6 80 0.82
7 9 0.09
8 3 0.03
ACGTcount: A:0.20, C:0.18, G:0.15, T:0.47
Consensus pattern (6 bp):
CTGATT
Found at i:46439469 original size:37 final size:31
Alignment explanation
Indices: 46439330--46439461 Score: 192
Period size: 31 Copynumber: 4.3 Consensus size: 31
46439320 ACATTCTAAT
* *
46439330 TTTTTATTCTGTTACCTGATACTGATTCTAA
1 TTTTGATTCTGTTACCTGATACTGATTCTGA
46439361 TTTTGATTCTGTTACCTGATACTGATTCTGA
1 TTTTGATTCTGTTACCTGATACTGATTCTGA
*
46439392 TTTTGATTCTGTTACCTGATACTGATTCCGA
1 TTTTGATTCTGTTACCTGATACTGATTCTGA
* * * *
46439423 TTCTGATTCTGTCACCTAATTCTGATTCTGA
1 TTTTGATTCTGTTACCTGATACTGATTCTGA
*
46439454 TTCTGATT
1 TTTTGATT
46439462 TTGATTCTAG
Statistics
Matches: 93, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 93 1.00
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (31 bp):
TTTTGATTCTGTTACCTGATACTGATTCTGA
Found at i:46441647 original size:44 final size:42
Alignment explanation
Indices: 46441584--46441723 Score: 140
Period size: 44 Copynumber: 3.3 Consensus size: 42
46441574 TATGTTATCG
* *
46441584 TGTAAGACCACGTCTGGGACGTTGGCATCG-ACTTATGATTTACA
1 TGTAAGACCACATCTGGGACATTGGCATCGTA-TT-TGATTT-CA
*
46441628 TGTAAGACCACATCTGGGACATTGGCATCGTATTTGATTTCG
1 TGTAAGACCACATCTGGGACATTGGCATCGTATTTGATTTCA
* * * * * *
46441670 TGTAAGACC-CTGTCTGGGATAGTGGCATTGATATTGGATTACA
1 TGTAAGACCAC-ATCTGGGACATTGGCATCG-TATTTGATTTCA
46441713 TGTAAGACCAC
1 TGTAAGACCAC
46441724 GTTTGGGATG
Statistics
Matches: 82, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
41 1 0.01
42 25 0.30
43 24 0.29
44 31 0.38
45 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACATCTGGGACATTGGCATCGTATTTGATTTCA
Found at i:46441731 original size:43 final size:42
Alignment explanation
Indices: 46441584--46441744 Score: 132
Period size: 43 Copynumber: 3.8 Consensus size: 42
46441574 TATGTTATCG
* * *
46441584 TGTAAGACCACGTCTGGGA-CGTTGGCATCG-ACTTATGATTTACA
1 TGTAAGACCACGTCTGGGATAG-TGGCATTGTA-TT-GGA-TTACA
* * * * * * *
46441628 TGTAAGACCACATCTGGGACATTGGCATCGTATTTGATTTCG
1 TGTAAGACCACGTCTGGGATAGTGGCATTGTATTGGATTACA
46441670 TGTAAGACC-CTGTCTGGGATAGTGGCATTGATATTGGATTACA
1 TGTAAGACCAC-GTCTGGGATAGTGGCATTG-TATTGGATTACA
*
46441713 TGTAAGACCACGTTTGGGAT-GTTGGCATTGTA
1 TGTAAGACCACGTCTGGGATAG-TGGCATTGTA
46441745 CGAGTTTTCT
Statistics
Matches: 98, Mismatches: 13, Indels: 14
0.78 0.10 0.11
Matches are distributed among these distances:
41 1 0.01
42 30 0.31
43 37 0.38
44 29 0.30
45 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGATAGTGGCATTGTATTGGATTACA
Found at i:46443617 original size:40 final size:40
Alignment explanation
Indices: 46443535--46443757 Score: 324
Period size: 40 Copynumber: 5.6 Consensus size: 40
46443525 TATTCGGATG
*
46443535 ATATCCGGGCTAAGACCCGAAGGCATGTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCAT-TTGTGCTAGTGACT
*
46443576 ATATCCGGCCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
46443616 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
46443656 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
46443696 ATATCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
46443736 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
46443758 TACTTGGGTT
Statistics
Matches: 166, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 14 0.08
40 127 0.77
41 25 0.15
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:46451729 original size:40 final size:40
Alignment explanation
Indices: 46451646--46451868 Score: 304
Period size: 40 Copynumber: 5.6 Consensus size: 40
46451636 TATTCGGATG
* *
46451646 ATATCCGGGCTAAGACCCGAAGGCATGTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCAT-TTGTGCTAGTGGCT
*
46451687 ATATCCGGGCTAAGTCCCGAAGGAATTTGTGCTAGTGGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCT
**
46451727 ATATCCGGGCTAACACCCGAAGGCATTTGTGCTAGTGGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCT
* * * **
46451767 ATATTCGGTCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCT
* * *
46451807 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCT
*
46451847 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
46451869 TACTTGGTTT
Statistics
Matches: 165, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
39 15 0.09
40 126 0.76
41 24 0.15
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCT
Found at i:46459029 original size:40 final size:40
Alignment explanation
Indices: 46458985--46459129 Score: 263
Period size: 40 Copynumber: 3.6 Consensus size: 40
46458975 GCTACCCACT
46458985 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
46459025 CAAATGCCTTCGAGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
46459065 CAACTGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
46459105 CAAATGCCTTCGGGACTTCGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
46459130 TTATCATCCG
Statistics
Matches: 100, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 100 1.00
ACGTcount: A:0.26, C:0.30, G:0.23, T:0.22
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:46467399 original size:7 final size:8
Alignment explanation
Indices: 46467382--46467407 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
46467372 ATAGTGCAAC
46467382 AAAAATAA
1 AAAAATAA
46467390 AAAAATAA
1 AAAAATAA
46467398 AAAAATAA
1 AAAAATAA
46467406 AA
1 AA
46467408 TAGCACATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAAATAA
Found at i:46470657 original size:42 final size:41
Alignment explanation
Indices: 46470611--46470760 Score: 158
Period size: 42 Copynumber: 3.6 Consensus size: 41
46470601 TGAGACTATG
* *
46470611 TGTAAGACCATATCTGGGATATGGCATCAATTCAAGACTTCC
1 TGTAAGACCATATCTGGGATATGGCATCGATTCAAGA-TTCA
**
46470653 TGTAAGACCATATCTGGGATATGGCATCGATGT-TTGATTTCA
1 TGTAAGACCATATCTGGGATATGGCATCGAT-TCAAGA-TTCA
* * * * * *
46470695 TGTAAGACAATAGCTGGGTTATTGCCATCGATACAATATTACA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATTCAAGATT-CA
46470738 TGTAAGACCATATCTGGGATATG
1 TGTAAGACCATATCTGGGATATG
46470761 ACATTGGTAT
Statistics
Matches: 88, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
42 57 0.65
43 31 0.35
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (41 bp):
TGTAAGACCATATCTGGGATATGGCATCGATTCAAGATTCA
Found at i:46476916 original size:54 final size:54
Alignment explanation
Indices: 46476860--46477192 Score: 427
Period size: 54 Copynumber: 6.2 Consensus size: 54
46476850 ACCTCTATAA
** * * *
46476860 GGTAGAATTA-TCGAAATACCCCTATAAGGTTGAATTATCGAAATACCCCTGTAA
1 GGTAGAATTACT-GAAATACCCCCGTAAGGTAGAATTACCGAAATACCCCTGTAG
* *
46476914 GGTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTATAG
1 GGTAGAATTACTGAAATACCCCCGTAAGGTAGAATTACCGAAATACCCCTGTAG
*
46476968 GGTAGAATTA-TTAGAATACCCCCGTAAGGTAGAATTACCGAAATACCCCTGTAG
1 GGTAGAATTACTGA-AATACCCCCGTAAGGTAGAATTACCGAAATACCCCTGTAG
46477022 GGTAGAATTACTGAAATACCCCCGTAAGGTAGAATTACCGAAATACCCCTGTAG
1 GGTAGAATTACTGAAATACCCCCGTAAGGTAGAATTACCGAAATACCCCTGTAG
* * ** **
46477076 GGTAGAATTACTAAAATACCCCCGTAGGGTAGAATTATTGAAATACCTTTGTAG
1 GGTAGAATTACTGAAATACCCCCGTAAGGTAGAATTACCGAAATACCCCTGTAG
* *** * * * *
46477130 GGTAGAAATACTGAAATACCTTTGTAGGGTAGAATTACCGAGATACCCTTGTGG
1 GGTAGAATTACTGAAATACCCCCGTAAGGTAGAATTACCGAAATACCCCTGTAG
*
46477184 GGTAAAATT
1 GGTAGAATT
46477193 GCCATTTTGC
Statistics
Matches: 249, Mismatches: 27, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
53 2 0.01
54 244 0.98
55 3 0.01
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.26
Consensus pattern (54 bp):
GGTAGAATTACTGAAATACCCCCGTAAGGTAGAATTACCGAAATACCCCTGTAG
Found at i:46477181 original size:27 final size:27
Alignment explanation
Indices: 46476860--46477192 Score: 371
Period size: 27 Copynumber: 12.3 Consensus size: 27
46476850 ACCTCTATAA
* * *
46476860 GGTAGAATTATCGAAATACCCCTATAA
1 GGTAGAATTACCGAAATACCCCTGTAG
* * *
46476887 GGTTGAATTATCGAAATACCCCTGTAA
1 GGTAGAATTACCGAAATACCCCTGTAG
* *
46476914 GGTAGAATTACTGAAATACCCCTGTAA
1 GGTAGAATTACCGAAATACCCCTGTAG
*
46476941 GGTAGAATTACCGAAATACCCCTATAG
1 GGTAGAATTACCGAAATACCCCTGTAG
** * *
46476968 GGTAGAATTA-TTAGAATACCCCCGTAA
1 GGTAGAATTACCGA-AATACCCCTGTAG
46476995 GGTAGAATTACCGAAATACCCCTGTAG
1 GGTAGAATTACCGAAATACCCCTGTAG
* * *
46477022 GGTAGAATTACTGAAATACCCCCGTAA
1 GGTAGAATTACCGAAATACCCCTGTAG
46477049 GGTAGAATTACCGAAATACCCCTGTAG
1 GGTAGAATTACCGAAATACCCCTGTAG
** *
46477076 GGTAGAATTACTAAAATACCCCCGTAG
1 GGTAGAATTACCGAAATACCCCTGTAG
** **
46477103 GGTAGAATTATTGAAATACCTTTGTAG
1 GGTAGAATTACCGAAATACCCCTGTAG
* * **
46477130 GGTAGAAATACTGAAATACCTTTGTAG
1 GGTAGAATTACCGAAATACCCCTGTAG
* * *
46477157 GGTAGAATTACCGAGATACCCTTGTGG
1 GGTAGAATTACCGAAATACCCCTGTAG
*
46477184 GGTAAAATT
1 GGTAGAATT
46477193 GCCATTTTGC
Statistics
Matches: 265, Mismatches: 39, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
26 1 0.00
27 263 0.99
28 1 0.00
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
GGTAGAATTACCGAAATACCCCTGTAG
Found at i:46478367 original size:37 final size:37
Alignment explanation
Indices: 46478317--46478437 Score: 206
Period size: 37 Copynumber: 3.3 Consensus size: 37
46478307 TTATTACGAA
* *
46478317 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
* *
46478354 GTCTTACCCGGACAAAATCTCCATACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
46478391 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
46478428 GTCTTACCCG
1 GTCTTACCCG
46478438 AAATATATTT
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 78 1.00
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:46478637 original size:46 final size:45
Alignment explanation
Indices: 46478584--46478719 Score: 182
Period size: 46 Copynumber: 3.0 Consensus size: 45
46478574 ATATATACAA
* * *
46478584 ATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATCC
1 ATCTCATACAAAT-TCGCATTAGCCATTCGGCTTTACCACATATCC
* *
46478630 ATCTCATACACAATTCGCATTAGCCATTCGGCTTTACCTCATATCT
1 ATCTCATACA-AATTCGCATTAGCCATTCGGCTTTACCACATATCC
* *
46478676 ATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT
1 ATCTCATACA-AATTCGCATTAGCCATTCGGCTTTACCACATAT
46478720 ATACATGTTC
Statistics
Matches: 81, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
46 79 0.98
47 2 0.02
ACGTcount: A:0.27, C:0.31, G:0.08, T:0.34
Consensus pattern (45 bp):
ATCTCATACAAATTCGCATTAGCCATTCGGCTTTACCACATATCC
Found at i:46478754 original size:47 final size:47
Alignment explanation
Indices: 46478693--46479217 Score: 618
Period size: 47 Copynumber: 11.1 Consensus size: 47
46478683 ACACATTTCG
* * * **
46478693 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
46478740 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTC--CA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * * * ** *
46478785 -TTTGGCCTTATC-ACGC--A--A-ATATATACAGGTTCACATTCATCA
1 CATTGGCCAT-TCGGC-CTTATCACACATACGCATGTTCACATTCATCA
46478827 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ***
46478874 CATTGGCCATTCGGCCTAATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
*
46478925 CATTGGCCATTCAGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * **
46478972 CATTGGCCATTCGGCCTCATCACGCATACATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
46479023 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ** *
46479070 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C--ACATACGCATGTTCACATTCATCA
46479121 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* *
46479168 CATTGGTCATCCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
46479215 CAT
1 CAT
46479218 AAAATCCTAA
Statistics
Matches: 408, Mismatches: 47, Indels: 46
0.81 0.09 0.09
Matches are distributed among these distances:
40 16 0.04
41 1 0.00
42 5 0.01
43 9 0.02
44 9 0.02
45 5 0.01
46 1 0.00
47 233 0.57
49 2 0.00
51 127 0.31
ACGTcount: A:0.27, C:0.30, G:0.13, T:0.30
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:46478906 original size:98 final size:98
Alignment explanation
Indices: 46478775--46479195 Score: 720
Period size: 98 Copynumber: 4.3 Consensus size: 98
46478765 ATACGCATGT
* *
46478775 TCACATT--CCATTTGGCCTTATCACGCAAATATATACAGGTTCACATTCATCACATTGGCCATT
1 TCACATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCACATTGGCCATT
46478838 CGGCCTTATCACACATACGCATGTTCACATTCA
66 CGGCCTTATCACACATACGCATGTTCACATTCA
* * *
46478871 TCACATTGGCCATTCGGCCTAATCACACATATATATACGGGTTCACATTCATCACATTGGCCATT
1 TCACATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCACATTGGCCATT
*
46478936 CAGCCTTATCACACATACGCATGTTCACATTCA
66 CGGCCTTATCACACATACGCATGTTCACATTCA
* * *
46478969 TCACATTGGCCATTCGGCCTCATCACGCATACATATACGGGTTCACATTCATCACATTGGCCATT
1 TCACATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCACATTGGCCATT
46479034 CGGCCTTATCACACATACGCATGTTCACATTCA
66 CGGCCTTATCACACATACGCATGTTCACATTCA
46479067 TCACATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCACATTGGCCATT
1 TCACATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCACATTGGCCATT
46479132 CGGCCTTATCACACATACGCATGTTCACATTCA
66 CGGCCTTATCACACATACGCATGTTCACATTCA
* * *
46479165 TCACATTGGTCATCCGGCCTTATCACACATA
1 TCACATTGGCCATTCGGCCTTATCACGCATA
46479196 CGCATGTTCA
Statistics
Matches: 307, Mismatches: 16, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
96 7 0.02
98 300 0.98
ACGTcount: A:0.27, C:0.30, G:0.13, T:0.30
Consensus pattern (98 bp):
TCACATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCACATTGGCCATT
CGGCCTTATCACACATACGCATGTTCACATTCA
Found at i:46479101 original size:196 final size:194
Alignment explanation
Indices: 46478693--46479196 Score: 773
Period size: 196 Copynumber: 2.6 Consensus size: 194
46478683 ACACATTTCG
* * *
46478693 CATTAGCCATTCGGCC-T-T-ACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
1 CATTGGCCATTCGGCCTTATCACCATATATATACAGGTTCACATTCATCACATTGGCCATTCGGC
* *
46478755 CTTATCACACATACGCATGTTCACA-T--TC-CA-T----TT-GGCCTTATCACGCAAATATATA
66 CTTATCACACATACGCATGTTCACATTCATCACATTGGCATTCGGCCTTATCACGCATACATATA
46478810 CAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
131 CAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
46478874 CATTGGCCATTCGGCCTAATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCAG
1 CATTGGCCATTCGGCCTTATCAC-CATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
*
46478939 CCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTCATCACGCATACATA
65 CCTTATCACACATACGCATGTTCACATTCATCACATTGG-CATTCGGCCTTATCACGCATACATA
*
46479004 TACGGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATC
129 TACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATC
46479069 A
194 A
46479070 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCAC-CATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
* *
46479135 CCTTATCACACATACGCATGTTCACATTCATCACATTGGTCATCCGGCCTTATCACACATAC
65 CCTTATCACACATACGCATGTTCACATTCATCACATTGG-CATTCGGCCTTATCACGCATAC
46479197 GCATGTTCAC
Statistics
Matches: 290, Mismatches: 18, Indels: 15
0.90 0.06 0.05
Matches are distributed among these distances:
181 15 0.05
183 1 0.00
184 2 0.01
185 63 0.22
186 1 0.00
188 2 0.01
189 2 0.01
190 1 0.00
195 2 0.01
196 201 0.69
ACGTcount: A:0.27, C:0.30, G:0.13, T:0.30
Consensus pattern (194 bp):
CATTGGCCATTCGGCCTTATCACCATATATATACAGGTTCACATTCATCACATTGGCCATTCGGC
CTTATCACACATACGCATGTTCACATTCATCACATTGGCATTCGGCCTTATCACGCATACATATA
CAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:46479218 original size:23 final size:23
Alignment explanation
Indices: 46479143--46479218 Score: 59
Period size: 23 Copynumber: 3.3 Consensus size: 23
46479133 GGCCTTATCA
46479143 CACATACGCATGTTCACATTCAT
1 CACATACGCATGTTCACATTCAT
** * *
46479166 CACATTGGTCATCCG-GC-CTTATCA-
1 CACATACG-CAT--GTTCACAT-TCAT
46479190 CACATACGCATGTTCACATTCAT
1 CACATACGCATGTTCACATTCAT
46479213 CACATA
1 CACATA
46479219 AAATCCTAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 14
0.63 0.13 0.23
Matches are distributed among these distances:
21 1 0.03
22 4 0.11
23 17 0.45
24 11 0.29
25 4 0.11
26 1 0.03
ACGTcount: A:0.29, C:0.32, G:0.11, T:0.29
Consensus pattern (23 bp):
CACATACGCATGTTCACATTCAT
Found at i:46482801 original size:40 final size:40
Alignment explanation
Indices: 46482769--46483160 Score: 658
Period size: 40 Copynumber: 9.8 Consensus size: 40
46482759 CCAGCATGAT
* * *
46482769 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* ** *
46482809 TGCTCTTTGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
46482849 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
46482889 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
46482929 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
46482969 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
46483009 TGCTCTTCGGGACTTAGCCCGGATACATCACTAACACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
46483049 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
46483089 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
46483129 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
46483161 CTCAATTCTC
Statistics
Matches: 327, Mismatches: 25, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 327 1.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:46484430 original size:37 final size:37
Alignment explanation
Indices: 46484376--46484498 Score: 203
Period size: 37 Copynumber: 3.3 Consensus size: 37
46484366 TTATTACGAA
* *
46484376 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
46484413 GT-TATACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCT-TACCCGGACATAATCTCCACACGTAGTCATCGG
46484450 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
46484487 GTCTTACTCGGA
1 GTCTTACCCGGA
46484499 ATATATTTCC
Statistics
Matches: 81, Mismatches: 3, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
36 1 0.01
37 79 0.98
38 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:46484695 original size:46 final size:46
Alignment explanation
Indices: 46484642--46484778 Score: 193
Period size: 46 Copynumber: 3.0 Consensus size: 46
46484632 TATATATACA
* *
46484642 CATCTCATACATATTTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
* * *
46484688 CATCTCATACACGTTTCTCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
* * * *
46484734 TATCTCATACACATTTCGCAATAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATAT
46484779 ATACATGTTC
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.26, C:0.31, G:0.08, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
Found at i:46484813 original size:47 final size:47
Alignment explanation
Indices: 46484757--46485229 Score: 469
Period size: 47 Copynumber: 10.0 Consensus size: 47
46484747 TTTCGCAATA
* *
46484757 GCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTACCACACATACACATGTTCACATTCATCACATTG
* *
46484804 GCCATTCGGCCTTATCACACATACGCATGTTCACA-T--TC-CATTCG
1 GCCATTCGGCCTTACCACACATACACATGTTCACATTCATCACATT-G
* * * * * * *
46484848 GCC-TT----ATCACGCATATATATATAGGTTCACATTCATCACATTG
1 GCCATTCGGCCTTAC-CACACATACACATGTTCACATTCATCACATTG
* *
46484891 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTACCACACATACACATGTTCACATTCATCACATTG
* * *
46484938 GCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTG
1 GCCATTCGGCCTTACCACACATACACAT----GTTCACATTCATCACATTG
* * * **
46484989 GCCATTCGGCCTCATCACGCATATATATACGGGTTCACATTCATCACATTG
1 GCCATTCGGCCT--T-AC-CACACATACACATGTTCACATTCATCACATTG
* *
46485040 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTACCACACATACACATGTTCACATTCATCACATTG
* * * *
46485087 GCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCACATTG
1 GCCATTCGGCC-T-T-AC-CACACATACACATGTTCACATTCATCACATTG
* *
46485138 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTACCACACATACACATGTTCACATTCATCACATTG
* * *
46485185 GCGATTCGGCCTTATCACACATACGCATGTTCACATTCATCACAT
1 GCCATTCGGCCTTACCACACATACACATGTTCACATTCATCACAT
46485230 AAAATCCTAA
Statistics
Matches: 352, Mismatches: 51, Indels: 46
0.78 0.11 0.10
Matches are distributed among these distances:
39 2 0.01
40 14 0.04
41 1 0.00
43 12 0.03
44 12 0.03
46 1 0.00
47 190 0.54
48 5 0.01
49 3 0.01
50 2 0.01
51 100 0.28
53 1 0.00
54 1 0.00
55 8 0.02
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.31
Consensus pattern (47 bp):
GCCATTCGGCCTTACCACACATACACATGTTCACATTCATCACATTG
Found at i:46484901 original size:51 final size:49
Alignment explanation
Indices: 46484834--46485229 Score: 461
Period size: 51 Copynumber: 8.1 Consensus size: 49
46484824 ATACGCATGT
46484834 TCACATT--CCATTCGGCCTTATCACGCATATATATATAGGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCAC-CATATATATAT-GGTTCACATTCA
* ***
46484883 TCACATTGGCCATTCGGCCTTATCA-CACATACGCAT-GTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACCATATATATATGGTTCACATTCA
*
46484930 TCACATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCAC-CATATATATA-TGGTTCACATTCA
* *
46484981 TCACATTGGCCATTCGGCCTCATCACGCATATATATACGGGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCAC-CATATATATA-TGGTTCACATTCA
* ***
46485032 TCACATTGGCCATTCGGCCTTATCA-CACATACGCAT-GTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACCATATATATATGGTTCACATTCA
*
46485079 TCACATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCAC-CATATATATA-TGGTTCACATTCA
* ***
46485130 TCACATTGGCCATTCGGCCTTATCA-CACATACGCAT-GTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACCATATATATATGGTTCACATTCA
* * ***
46485177 TCACATTGGCGATTCGGCCTTATCA-CACATACGCAT-GTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACCATATATATATGGTTCACATTCA
46485224 TCACAT
1 TCACAT
46485230 AAAATCCTAA
Statistics
Matches: 309, Mismatches: 28, Indels: 22
0.86 0.08 0.06
Matches are distributed among these distances:
47 135 0.44
49 38 0.12
51 136 0.44
ACGTcount: A:0.27, C:0.30, G:0.13, T:0.31
Consensus pattern (49 bp):
TCACATTGGCCATTCGGCCTTATCACCATATATATATGGTTCACATTCA
Found at i:46484961 original size:98 final size:94
Alignment explanation
Indices: 46484872--46485229 Score: 482
Period size: 98 Copynumber: 3.7 Consensus size: 94
46484862 ATATATATAG
*
46484872 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATT
1 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACATT
* *
46484937 GGCCATTCGGCCTTATCACACATATATAT
66 GGCCATTCGGCCTTATCACACATACACAT
* * * *
46484966 ACGGGTTCACATTCATCACATTGGCCATTCGGCCTCATCACGCATATATATACGGGTTCACATTC
1 ----GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACAT----GTTCACATTC
*
46485031 ATCACATTGGCCATTCGGCCTTATCACACATACGCAT
58 ATCACATTGGCCATTCGGCCTTATCACACATACACAT
* * *
46485068 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCA
1 GTTCACATTCATCACATTGGCCATTCGGCCTTATCA--C--ACATACACATGTTCACATTCATCA
*
46485133 CATTGGCCATTCGGCCTTATCACACATACGCAT
62 CATTGGCCATTCGGCCTTATCACACATACACAT
* *
46485166 GTTCACATTCATCACATTGGCGATTCGGCCTTATCACACATACGCATGTTCACATTCATCACAT
1 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACAT
46485230 AAAATCCTAA
Statistics
Matches: 234, Mismatches: 18, Indels: 20
0.86 0.07 0.07
Matches are distributed among these distances:
94 23 0.10
96 1 0.00
98 159 0.68
100 1 0.00
102 50 0.21
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.30
Consensus pattern (94 bp):
GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACATT
GGCCATTCGGCCTTATCACACATACACAT
Found at i:46485111 original size:149 final size:147
Alignment explanation
Indices: 46484834--46485229 Score: 656
Period size: 149 Copynumber: 2.7 Consensus size: 147
46484824 ATACGCATGT
46484834 TCACATT--CCATTCGGCCTTATCACGCATATATATATAGGTTCACATTCATCACATTGGCCATT
1 TCACATTGGCCATTCGGCCTTATCACGC--ATATATATAGGTTCACATTCATCACATTGGCCATT
46484897 CGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAT
64 CGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAT
*
46484962 ATATACGGGTTCACATTCA
129 ATATACAGGTTCACATTCA
*
46484981 TCACATTGGCCATTCGGCCTCATCACGCATATATATACGGGTTCACATTCATCACATTGGCCATT
1 TCACATTGGCCATTCGGCCTTATCACGCATATATATA--GGTTCACATTCATCACATTGGCCATT
*
46485046 CGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACGCATAT
64 CGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAT
46485111 ATATACAGGTTCACATTCA
129 ATATACAGGTTCACATTCA
* *** *
46485130 TCACATTGGCCATTCGGCCTTATCACACATACGCAT--GTTCACATTCATCACATTGGCGATTCG
1 TCACATTGGCCATTCGGCCTTATCACGCATATATATAGGTTCACATTCATCACATTGGCCATTCG
46485193 GCCTTATCACACATACGCATGTTCACATTCATCACAT
66 GCCTTATCACACATACGCATGTTCACATTCATCACAT
46485230 AAAATCCTAA
Statistics
Matches: 236, Mismatches: 9, Indels: 10
0.93 0.04 0.04
Matches are distributed among these distances:
145 63 0.27
147 16 0.07
149 157 0.67
ACGTcount: A:0.27, C:0.30, G:0.13, T:0.31
Consensus pattern (147 bp):
TCACATTGGCCATTCGGCCTTATCACGCATATATATAGGTTCACATTCATCACATTGGCCATTCG
GCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATAT
ATACAGGTTCACATTCA
Found at i:46485230 original size:23 final size:23
Alignment explanation
Indices: 46485155--46485230 Score: 59
Period size: 23 Copynumber: 3.3 Consensus size: 23
46485145 GGCCTTATCA
46485155 CACATACGCATGTTCACATTCAT
1 CACATACGCATGTTCACATTCAT
** * *
46485178 CACATTGGC--GATTCGGCCTT-AT
1 CACATACGCATG-TTC-ACATTCAT
46485200 CACACATACGCATGTTCACATTCAT
1 --CACATACGCATGTTCACATTCAT
46485225 CACATA
1 CACATA
46485231 AAATCCTAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 14
0.63 0.13 0.23
Matches are distributed among these distances:
21 1 0.03
22 5 0.13
23 16 0.42
24 10 0.26
25 5 0.13
26 1 0.03
ACGTcount: A:0.29, C:0.30, G:0.12, T:0.29
Consensus pattern (23 bp):
CACATACGCATGTTCACATTCAT
Found at i:46488249 original size:31 final size:32
Alignment explanation
Indices: 46488211--46488272 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
46488201 CTCACTGCAA
* *
46488211 TCTGGTGGCTTCGCCAC-ATATATATATCTGT
1 TCTGGTGGCCTAGCCACAATATATATATCTGT
*
46488242 TCTGGTGGCCTAGCCACAATATCTATATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
46488273 GTGACTTCGT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 15 0.56
32 12 0.44
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.35
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:46495563 original size:42 final size:42
Alignment explanation
Indices: 46495511--46495593 Score: 157
Period size: 42 Copynumber: 2.0 Consensus size: 42
46495501 CTGAGACTAT
*
46495511 GTGTAAGACCATATCTGGGATATGGCATCAATTTAAGACTTC
1 GTGTAAGACCATATCTAGGATATGGCATCAATTTAAGACTTC
46495553 GTGTAAGACCATATCTAGGATATGGCATCAATTTAAGACTT
1 GTGTAAGACCATATCTAGGATATGGCATCAATTTAAGACTT
46495594 GGTTATTTTG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (42 bp):
GTGTAAGACCATATCTAGGATATGGCATCAATTTAAGACTTC
Found at i:46496747 original size:40 final size:40
Alignment explanation
Indices: 46496692--46496815 Score: 167
Period size: 40 Copynumber: 3.1 Consensus size: 40
46496682 ATAGCCGTAC
* *
46496692 ATAGCCGAAGGTATCTCAAATCGCACACTAAGTGCCTTAT
1 ATAGCCGAAGCTATCTCAAATCGCACACTAAGTGCCATAT
* * *
46496732 ATAGCTGAAGCTATCTCAATCTCGCACACTAAATGCCATAT
1 ATAGCCGAAGCTATCTCAA-ATCGCACACTAAGTGCCATAT
* * *
46496773 ATAGCCGAAGCTATGTCGAATCGCACACTAAGTGCCACAT
1 ATAGCCGAAGCTATCTCAAATCGCACACTAAGTGCCATAT
46496813 ATA
1 ATA
46496816 ACTGATTTGT
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
40 38 0.53
41 34 0.47
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (40 bp):
ATAGCCGAAGCTATCTCAAATCGCACACTAAGTGCCATAT
Found at i:46498068 original size:27 final size:28
Alignment explanation
Indices: 46498016--46498073 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 28
46498006 CATCACATAG
46498016 GGGAAAAATAGTCATCTTACCATATA-A
1 GGGAAAAATAGTCATCTTACCATATATA
* *
46498043 GGGAATAATAGTCATTTTATCC-TATATA
1 GGGAAAAATAGTCATCTTA-CCATATATA
46498071 GGG
1 GGG
46498074 GGTCTAGGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
27 21 0.78
28 6 0.22
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (28 bp):
GGGAAAAATAGTCATCTTACCATATATA
Found at i:46506733 original size:28 final size:28
Alignment explanation
Indices: 46506672--46506733 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
46506662 TCAGTGTACG
*
46506672 AAATATTGAGAATGGCACTTAGTGTGCA
1 AAATATTGAGAATGACACTTAGTGTGCA
* *
46506700 ATATATTGAGAATGACACTTCGTGTGCA
1 AAATATTGAGAATGACACTTAGTGTGCA
46506728 AAATAT
1 AAATAT
46506734 CGAATGATTC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.31
Consensus pattern (28 bp):
AAATATTGAGAATGACACTTAGTGTGCA
Found at i:46506946 original size:43 final size:43
Alignment explanation
Indices: 46506845--46506973 Score: 138
Period size: 43 Copynumber: 3.0 Consensus size: 43
46506835 TTTATAATGG
* * * *
46506845 TGATATTCGGGCTTTGAGCCTAGCAAGCTTTAA-GCTGGTGAATAA
1 TGATA-TCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTG-A-AA
*
46506890 T-ATTATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
1 TGA-TATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
* *
46506933 TGATATCGGGCTTCAAGCCTAGCAGGCGA-AATGCCGGTGAA
1 TGATATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAA
46506974 TGAGTTCAGA
Statistics
Matches: 73, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
42 12 0.16
43 26 0.36
44 26 0.36
45 9 0.12
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (43 bp):
TGATATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
Found at i:46506996 original size:41 final size:43
Alignment explanation
Indices: 46506906--46507000 Score: 115
Period size: 41 Copynumber: 2.3 Consensus size: 43
46506896 CGGGCTTCGG
* * * *
46506906 GCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGGCTTCAA
1 GCCTAGCAGGCGATAATGCCGGTGAAATGATATCAGACTTAAA
46506949 GCCTAGCAGGCGA-AATGCCGGTG-AATGAGT-TCAGACTTAAA
1 GCCTAGCAGGCGATAATGCCGGTGAAATGA-TATCAGACTTAAA
*
46506990 GTCTAGCAGGC
1 GCCTAGCAGGC
46507001 TTCGTGCCAG
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
41 23 0.50
42 11 0.24
43 12 0.26
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.21
Consensus pattern (43 bp):
GCCTAGCAGGCGATAATGCCGGTGAAATGATATCAGACTTAAA
Found at i:46507054 original size:40 final size:41
Alignment explanation
Indices: 46506906--46507053 Score: 138
Period size: 40 Copynumber: 3.6 Consensus size: 41
46506896 CGGGCTTCGG
*
46506906 GCCTAGCAGGCTATAATGCCGGTGAAATG-ATATCGGGCTTCAA
1 GCCTAGCAGGCTA-AATGCCGGTG-AATGAAT-TCGGGCTTAAA
* * * *
46506949 GCCTAGCAGGCGAAATGCCGGTGAATGAGTTCAGACTTAAA
1 GCCTAGCAGGCTAAATGCCGGTGAATGAATTCGGGCTTAAA
* *** * *
46506990 GTCTAGCAGGCTTCGTGCCAGTG-ATGAATTCGGGTTTAAA
1 GCCTAGCAGGCTAAATGCCGGTGAATGAATTCGGGCTTAAA
* *
46507030 CCCTAGCCGGCTAAATGCCGGTGA
1 GCCTAGCAGGCTAAATGCCGGTGA
46507054 TTTGATAAAC
Statistics
Matches: 81, Mismatches: 22, Indels: 6
0.74 0.20 0.06
Matches are distributed among these distances:
40 29 0.36
41 29 0.36
42 11 0.14
43 12 0.15
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (41 bp):
GCCTAGCAGGCTAAATGCCGGTGAATGAATTCGGGCTTAAA
Found at i:46509982 original size:21 final size:21
Alignment explanation
Indices: 46509958--46510010 Score: 106
Period size: 21 Copynumber: 2.5 Consensus size: 21
46509948 TTTTATCTAA
46509958 GATGTCGCGACTTTAGGGTTC
1 GATGTCGCGACTTTAGGGTTC
46509979 GATGTCGCGACTTTAGGGTTC
1 GATGTCGCGACTTTAGGGTTC
46510000 GATGTCGCGAC
1 GATGTCGCGAC
46510011 ATTAAGCCCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.15, C:0.21, G:0.34, T:0.30
Consensus pattern (21 bp):
GATGTCGCGACTTTAGGGTTC
Found at i:46528819 original size:43 final size:41
Alignment explanation
Indices: 46528768--46528847 Score: 115
Period size: 43 Copynumber: 1.9 Consensus size: 41
46528758 TGAATAATAT
** *
46528768 TATCGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAATGA
1 TATCGGCTTCAAGCCTAGCAGGCGA-AATGCCGGTGAAATGA
46528810 TATCGGGCTTCAAGCCTAGCAGGCGAAATGCCGGTGAA
1 TATC-GGCTTCAAGCCTAGCAGGCGAAATGCCGGTGAA
46528848 TGAGTTCAGA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
42 16 0.47
43 18 0.53
ACGTcount: A:0.25, C:0.23, G:0.31, T:0.21
Consensus pattern (41 bp):
TATCGGCTTCAAGCCTAGCAGGCGAAATGCCGGTGAAATGA
Found at i:46528870 original size:41 final size:43
Alignment explanation
Indices: 46528780--46528874 Score: 115
Period size: 41 Copynumber: 2.3 Consensus size: 43
46528770 TCGGCTTCGG
* * * *
46528780 GCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGGCTTCAA
1 GCCTAGCAGGCGATAATGCCGGTGAAATGATATCAGACTTAAA
46528823 GCCTAGCAGGCGA-AATGCCGGTG-AATGAGT-TCAGACTTAAA
1 GCCTAGCAGGCGATAATGCCGGTGAAATGA-TATCAGACTTAAA
*
46528864 GTCTAGCAGGC
1 GCCTAGCAGGC
46528875 TTCGTGCCAG
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
41 23 0.50
42 11 0.24
43 12 0.26
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.21
Consensus pattern (43 bp):
GCCTAGCAGGCGATAATGCCGGTGAAATGATATCAGACTTAAA
Found at i:46528928 original size:40 final size:41
Alignment explanation
Indices: 46528780--46528927 Score: 138
Period size: 40 Copynumber: 3.6 Consensus size: 41
46528770 TCGGCTTCGG
*
46528780 GCCTAGCAGGCTATAATGCCGGTGAAATG-ATATCGGGCTTCAA
1 GCCTAGCAGGCTA-AATGCCGGTG-AATGAAT-TCGGGCTTAAA
* * * *
46528823 GCCTAGCAGGCGAAATGCCGGTGAATGAGTTCAGACTTAAA
1 GCCTAGCAGGCTAAATGCCGGTGAATGAATTCGGGCTTAAA
* *** * *
46528864 GTCTAGCAGGCTTCGTGCCAGTG-ATGAATTCGGGTTTAAA
1 GCCTAGCAGGCTAAATGCCGGTGAATGAATTCGGGCTTAAA
* *
46528904 CCCTAGCCGGCTAAATGCCGGTGA
1 GCCTAGCAGGCTAAATGCCGGTGA
46528928 TTTGATAAAC
Statistics
Matches: 81, Mismatches: 22, Indels: 6
0.74 0.20 0.06
Matches are distributed among these distances:
40 29 0.36
41 29 0.36
42 11 0.14
43 12 0.15
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (41 bp):
GCCTAGCAGGCTAAATGCCGGTGAATGAATTCGGGCTTAAA
Found at i:46531676 original size:21 final size:21
Alignment explanation
Indices: 46531652--46531704 Score: 106
Period size: 21 Copynumber: 2.5 Consensus size: 21
46531642 TTTTATCTAA
46531652 GATGTCGCGACTTTAGGGTTC
1 GATGTCGCGACTTTAGGGTTC
46531673 GATGTCGCGACTTTAGGGTTC
1 GATGTCGCGACTTTAGGGTTC
46531694 GATGTCGCGAC
1 GATGTCGCGAC
46531705 ATTAAGCCCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.15, C:0.21, G:0.34, T:0.30
Consensus pattern (21 bp):
GATGTCGCGACTTTAGGGTTC
Found at i:46544442 original size:27 final size:28
Alignment explanation
Indices: 46544412--46544528 Score: 143
Period size: 27 Copynumber: 4.3 Consensus size: 28
46544402 TTTAGTTTAC
* *
46544412 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACTGAAATACCCTTCGATTTG
* *
46544439 TAAAAATACTAAAATACCC-TCGATTTG
1 TAAAATTACTGAAATACCCTTCGATTTG
* *
46544466 TAAAATTACTTAAATACTC-TCGATTTG
1 TAAAATTACTGAAATACCCTTCGATTTG
*
46544493 TAAAATTACTGAAATA-CCTTCGACTTG
1 TAAAATTACTGAAATACCCTTCGATTTG
46544520 TAAAATTAC
1 TAAAATTAC
46544529 CAAAGTAACC
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
26 3 0.04
27 75 0.96
ACGTcount: A:0.40, C:0.17, G:0.09, T:0.34
Consensus pattern (28 bp):
TAAAATTACTGAAATACCCTTCGATTTG
Found at i:46544544 original size:54 final size:54
Alignment explanation
Indices: 46544435--46544545 Score: 136
Period size: 54 Copynumber: 2.1 Consensus size: 54
46544425 ATACCCTTAG
* * *
46544435 TTTGTAAAAATACTAAAATACCCTCGATTTGTAAAATTACTTAAATACTCTCGA
1 TTTGTAAAAATACTAAAATACCCTCGACTTGTAAAATTACTCAAATACTCCCGA
* * *
46544489 TTTGTAAAATTACTGAAATACCTTCGACTTGTAAAATTAC-CAAAGTAAC-CCCGA
1 TTTGTAAAAATACTAAAATACCCTCGACTTGTAAAATTACTCAAA-T-ACTCCCGA
46544543 TTT
1 TTT
46544546 ACAGAATTAC
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
53 3 0.06
54 44 0.90
55 2 0.04
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.34
Consensus pattern (54 bp):
TTTGTAAAAATACTAAAATACCCTCGACTTGTAAAATTACTCAAATACTCCCGA
Found at i:46544567 original size:27 final size:27
Alignment explanation
Indices: 46544536--46544715 Score: 211
Period size: 27 Copynumber: 6.7 Consensus size: 27
46544526 TACCAAAGTA
46544536 ACCC-CGATTTACAGAATTACTGTTTT
1 ACCCTCGATTTACAGAATTACTGTTTT
* * **
46544562 ACCCCCGATTTACAAAATTACCATTTT
1 ACCCTCGATTTACAGAATTACTGTTTT
* *
46544589 ACCCCCGATTTACATAATTA-TCGTTTT
1 ACCCTCGATTTACAGAATTACT-GTTTT
* * *
46544616 ACCCTTGACTTACAGAATTACCGTTTT
1 ACCCTCGATTTACAGAATTACTGTTTT
* *
46544643 ACCCTTGATTTATAGAATTACTGTTTT
1 ACCCTCGATTTACAGAATTACTGTTTT
* *
46544670 ACCCTTGATTTACAGAATTAATGTTTT
1 ACCCTCGATTTACAGAATTACTGTTTT
*
46544697 ACCCTCGATTTACAAAATT
1 ACCCTCGATTTACAGAATT
46544716 GCTAAAATAC
Statistics
Matches: 133, Mismatches: 18, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
26 4 0.03
27 129 0.97
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.39
Consensus pattern (27 bp):
ACCCTCGATTTACAGAATTACTGTTTT
Found at i:46544727 original size:54 final size:54
Alignment explanation
Indices: 46544615--46544730 Score: 133
Period size: 54 Copynumber: 2.1 Consensus size: 54
46544605 ATTATCGTTT
* * * * ****
46544615 TACCCTTGACTTACAGAATTACCGTTTTACCCTTGATTTATAGAATTACTGTTT
1 TACCCTTGACTTACAGAATTAACGTTTTACCCTCGATTTACAAAATTACTAAAA
* * *
46544669 TACCCTTGATTTACAGAATTAATGTTTTACCCTCGATTTACAAAATTGCTAAAA
1 TACCCTTGACTTACAGAATTAACGTTTTACCCTCGATTTACAAAATTACTAAAA
46544723 TACCCTTG
1 TACCCTTG
46544731 GTTTGTAAAA
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.29, C:0.21, G:0.10, T:0.40
Consensus pattern (54 bp):
TACCCTTGACTTACAGAATTAACGTTTTACCCTCGATTTACAAAATTACTAAAA
Found at i:46544740 original size:27 final size:27
Alignment explanation
Indices: 46544710--46544947 Score: 178
Period size: 27 Copynumber: 8.7 Consensus size: 27
46544700 CTCGATTTAC
* * *
46544710 AAAATTGCTAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTTAGTTTGT
*
46544737 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCTTAGTTTGT
*
46544764 AAAATTACCAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTTAGTTTGT
* * * *
46544791 GAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACCAAAATACCCTTAGTTTGT
* *
46544818 AAAATTACCAAAATACCCCT-GATT-T
1 AAAATTACCAAAATACCCTTAGTTTGT
* *
46544843 ACAAAGTTA-CAGAAATACCCTTGACTTTCT
1 A-AAA-TTACCA-AAATACCCTT-AGTTTGT
* * * * **
46544873 AAAAATTA-TAGAAATATCATTAGTATAC
1 -AAAATTACCA-AAATACCCTTAGTTTGT
* *
46544901 AAAATTACTAAAATACCTTTAGTTTGT
1 AAAATTACCAAAATACCCTTAGTTTGT
* * *
46544928 AGATTTACCAAAACACCCTT
1 AAAATTACCAAAATACCCTT
46544948 GTAGGATGAA
Statistics
Matches: 166, Mismatches: 37, Indels: 16
0.76 0.17 0.07
Matches are distributed among these distances:
25 2 0.01
26 7 0.04
27 132 0.80
28 5 0.03
29 15 0.09
30 4 0.02
31 1 0.01
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTAGTTTGT
Found at i:46545009 original size:27 final size:27
Alignment explanation
Indices: 46544979--46545070 Score: 107
Period size: 27 Copynumber: 3.4 Consensus size: 27
46544969 ACCCCTATTA
*
46544979 GGTAAAAAGACCGTAAAGCCCCAGTAG
1 GGTAAAATGACCGTAAAGCCCCAGTAG
*
46545006 GGTAAAGTGACCGTAAAGCCCCTA-TAG
1 GGTAAAATGACCGTAAAGCCCC-AGTAG
* * *
46545033 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCAGTAG
46545060 GGTAAAATGAC
1 GGTAAAATGAC
46545071 GAATATGCCC
Statistics
Matches: 57, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
27 55 0.96
28 2 0.04
ACGTcount: A:0.36, C:0.21, G:0.25, T:0.18
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCAGTAG
Found at i:46546363 original size:11 final size:11
Alignment explanation
Indices: 46546327--46546382 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
46546317 CATGGTATGT
46546327 ATGATATGCAC
1 ATGATATGCAC
* *
46546338 ATGACATG--T
1 ATGATATGCAC
46546347 ATGATATGCAC
1 ATGATATGCAC
*
46546358 ATGATATG--T
1 ATGATATGCAC
46546367 ATGATATGCAC
1 ATGATATGCAC
46546378 ATGAT
1 ATGAT
46546383 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:46546382 original size:20 final size:20
Alignment explanation
Indices: 46546316--46546382 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
46546306 ATTTTGATAA
*
46546316 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
46546336 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
46546356 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
46546376 ACATGAT
1 ACATGAT
46546383 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:46546503 original size:49 final size:49
Alignment explanation
Indices: 46546431--46546699 Score: 400
Period size: 49 Copynumber: 5.5 Consensus size: 49
46546421 GGAGGAAGTG
*
46546431 TAAAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTACGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTATGCCCCAGTTAT
* *
46546480 TAAAAGGGCTTATGCCCCAGTTA-TCAAAAGGGCTTATGCCTCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTATGCCCCAGTTAT
* *
46546528 CAAAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTACGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTATGCCCCAGTTAT
* *
46546577 TAAATAGGGCTTATGCCCTAGTTATTAAATAGGGCTTATGCCCCAGTTAT
1 TAAA-AGGGCTTATGCCCCAGTTATTAAAAAGGGCTTATGCCCCAGTTAT
* *
46546627 CAAAAGGGCTTATGCCCCAGTTATT-AAAAGGGCTTTTGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTATGCCCCAGTTAT
*
46546675 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 TAAAAG-GGCTTATGCC-CCAGTTAT
46546700 ATGATAAAGC
Statistics
Matches: 199, Mismatches: 17, Indels: 8
0.89 0.08 0.04
Matches are distributed among these distances:
48 75 0.38
49 79 0.40
50 45 0.23
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (49 bp):
TAAAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTATGCCCCAGTTAT
Done.