Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 148 of 316
Found at i:47122700 original size:25 final size:25
Alignment explanation
Indices: 47122654--47122762 Score: 67
Period size: 25 Copynumber: 4.4 Consensus size: 25
47122644 ATGGCTCTCT
* **
47122654 TGAGCTTCCCGATTTATGGCTCGCA
1 TGAGCTTCCCGATATACAGCTCGCA
*
47122679 TGAGCTTCTCGATATACAGCTCG-A
1 TGAGCTTCCCGATATACAGCTCGCA
* * * * *
47122703 TTGAGCCTCCTGTTATATAGCTCACA
1 -TGAGCTTCCCGATATACAGCTCGCA
* * ** *
47122729 TGAGTTTCCCGTTATATGGCTCGAA
1 TGAGCTTCCCGATATACAGCTCGCA
*
47122754 AGAGCTTCC
1 TGAGCTTCC
47122763 TGTTTACATG
Statistics
Matches: 64, Mismatches: 18, Indels: 4
0.74 0.21 0.05
Matches are distributed among these distances:
24 1 0.02
25 62 0.97
26 1 0.02
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (25 bp):
TGAGCTTCCCGATATACAGCTCGCA
Found at i:47124559 original size:21 final size:21
Alignment explanation
Indices: 47124533--47124574 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
47124523 ATACCTGGTA
*
47124533 AAAAGTATCGGTACTTTTTGT
1 AAAAGTATCGATACTTTTTGT
47124554 AAAAGTATCGATACTTTTTGT
1 AAAAGTATCGATACTTTTTGT
47124575 GTTGATTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.31, C:0.10, G:0.17, T:0.43
Consensus pattern (21 bp):
AAAAGTATCGATACTTTTTGT
Found at i:47138962 original size:5 final size:5
Alignment explanation
Indices: 47138952--47138981 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
47138942 TGTTAAATTT
*
47138952 GGTGA GGTGA GGTGA GGTAA GGTGA GGTGA
1 GGTGA GGTGA GGTGA GGTGA GGTGA GGTGA
47138982 AGGTAGAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.23, C:0.00, G:0.57, T:0.20
Consensus pattern (5 bp):
GGTGA
Found at i:47138976 original size:15 final size:16
Alignment explanation
Indices: 47138956--47138986 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
47138946 AAATTTGGTG
47138956 AGGTGAGGTG-AGGTA
1 AGGTGAGGTGAAGGTA
47138971 AGGTGAGGTGAAGGTA
1 AGGTGAGGTGAAGGTA
47138987 GAATTAAGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.29, C:0.00, G:0.52, T:0.19
Consensus pattern (16 bp):
AGGTGAGGTGAAGGTA
Found at i:47139109 original size:29 final size:29
Alignment explanation
Indices: 47139058--47139118 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 29
47139048 TCTTTATAAT
*
47139058 TTTTAAAAGATTAGATCAAAATTTTATTA
1 TTTTAAAAGATTAAATCAAAATTTTATTA
*
47139087 TTTTAAAAGATTAAAGT-ACAATTTTATTA
1 TTTTAAAAGATTAAA-TCAAAATTTTATTA
47139116 TTT
1 TTT
47139119 ATTAAATTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 28 0.97
30 1 0.03
ACGTcount: A:0.43, C:0.03, G:0.07, T:0.48
Consensus pattern (29 bp):
TTTTAAAAGATTAAATCAAAATTTTATTA
Found at i:47139701 original size:20 final size:20
Alignment explanation
Indices: 47139666--47139706 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
47139656 ACCTTCTTAT
47139666 AATTATTAATTACAAATAAAA
1 AATTATTAATTACAAA-AAAA
*
47139687 AATTATTGA-TACAAAAAAA
1 AATTATTAATTACAAAAAAA
47139706 A
1 A
47139707 TATAATAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 5 0.26
20 6 0.32
21 8 0.42
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.29
Consensus pattern (20 bp):
AATTATTAATTACAAAAAAA
Found at i:47142568 original size:30 final size:30
Alignment explanation
Indices: 47142534--47142595 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
47142524 ACTTATTTTA
47142534 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
* *
47142564 TTGTTAATTTTGTTATTATTTTAGAGTCAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
47142594 TT
1 TT
47142596 ACTTGTTAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.26, C:0.03, G:0.11, T:0.60
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:47146465 original size:27 final size:27
Alignment explanation
Indices: 47146404--47146465 Score: 65
Period size: 27 Copynumber: 2.3 Consensus size: 27
47146394 TATATAAAAC
47146404 ATATAATACTAGATTAAAAAAATATAT
1 ATATAATACTAGATTAAAAAAATATAT
* * *
47146431 ATACAATA-TATATTGAAAACAATA-AT
1 ATATAATACTAGATT-AAAAAAATATAT
47146457 AATATAATA
1 -ATATAATA
47146466 ACTAATAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 7 0.24
27 22 0.76
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.32
Consensus pattern (27 bp):
ATATAATACTAGATTAAAAAAATATAT
Found at i:47146712 original size:23 final size:23
Alignment explanation
Indices: 47146681--47146724 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
47146671 ATTGAGTATT
* *
47146681 AAAAGTATATATATAATATAGAC
1 AAAAATATATACATAATATAGAC
*
47146704 AAAAATATATGCATAATATAG
1 AAAAATATATACATAATATAG
47146725 TATTGAAAGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.57, C:0.05, G:0.09, T:0.30
Consensus pattern (23 bp):
AAAAATATATACATAATATAGAC
Found at i:47146803 original size:13 final size:12
Alignment explanation
Indices: 47146783--47146894 Score: 63
Period size: 13 Copynumber: 9.1 Consensus size: 12
47146773 GTGATATTAA
47146783 AAATATATACAT
1 AAATATATACAT
* *
47146795 AACATATATAAAA
1 AA-ATATATACAT
*
47146808 ATAATAATATTA-AA
1 A-AAT-ATA-TACAT
47146822 AATATATATACAT
1 AA-ATATATACAT
*
47146835 -AATATATATAT
1 AAATATATACAT
47146846 AGAATATATACAT
1 A-AATATATACAT
*
47146859 -AATATAGTA-TT
1 AAATATA-TACAT
47146870 AAAATATATACAT
1 -AAATATATACAT
*
47146883 -AACATATACAT
1 AAATATATACAT
47146894 A
1 A
47146895 TTAGAAATGA
Statistics
Matches: 79, Mismatches: 8, Indels: 26
0.70 0.07 0.23
Matches are distributed among these distances:
11 26 0.33
12 9 0.11
13 33 0.42
14 9 0.11
15 2 0.03
ACGTcount: A:0.58, C:0.06, G:0.02, T:0.34
Consensus pattern (12 bp):
AAATATATACAT
Found at i:47146803 original size:24 final size:23
Alignment explanation
Indices: 47146776--47146890 Score: 111
Period size: 24 Copynumber: 5.2 Consensus size: 23
47146766 GAATAATGTG
47146776 ATAT-TAAAAATATATACATAAC
1 ATATATAAAAATATATACATAAC
47146798 ATATATAAAAATA-ATA-AT---
1 ATATATAAAAATATATACATAAC
*
47146816 AT-TA-AAAATATATATACATAAT
1 ATATATAAAA-ATATATACATAAC
* *
47146838 ATATATATAGAATATATACATAAT
1 ATATATA-AAAATATATACATAAC
*
47146862 ATAGTATTAAAATATATACATAAC
1 ATA-TATAAAAATATATACATAAC
47146886 ATATA
1 ATATA
47146891 CATATTAGAA
Statistics
Matches: 78, Mismatches: 4, Indels: 21
0.76 0.04 0.20
Matches are distributed among these distances:
16 4 0.05
17 5 0.06
18 5 0.06
19 2 0.03
21 2 0.03
22 9 0.12
23 12 0.15
24 34 0.44
25 5 0.06
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.35
Consensus pattern (23 bp):
ATATATAAAAATATATACATAAC
Found at i:47146839 original size:11 final size:11
Alignment explanation
Indices: 47146784--47146894 Score: 70
Period size: 11 Copynumber: 10.1 Consensus size: 11
47146774 TGATATTAAA
47146784 AATATATACAT
1 AATATATACAT
*
47146795 AACATAT--AT
1 AATATATACAT
*
47146804 AA-AAATA-AT
1 AATATATACAT
* *
47146813 AATAT-TAAAA
1 AATATATACAT
47146823 ATATATATACAT
1 A-ATATATACAT
*
47146835 AATATATATAT
1 AATATATACAT
47146846 AGAATATATACAT
1 --AATATATACAT
* *
47146859 AATATAGTATTAA
1 AATATA-TA-CAT
47146872 AATATATACAT
1 AATATATACAT
*
47146883 AACATATACAT
1 AATATATACAT
47146894 A
1 A
47146895 TTAGAAATGA
Statistics
Matches: 78, Mismatches: 13, Indels: 18
0.72 0.12 0.17
Matches are distributed among these distances:
8 3 0.04
9 10 0.13
10 3 0.04
11 37 0.47
12 8 0.10
13 17 0.22
ACGTcount: A:0.58, C:0.06, G:0.02, T:0.34
Consensus pattern (11 bp):
AATATATACAT
Found at i:47146841 original size:15 final size:15
Alignment explanation
Indices: 47146785--47146846 Score: 62
Period size: 15 Copynumber: 4.5 Consensus size: 15
47146775 GATATTAAAA
*
47146785 ATATATACATAACAT
1 ATATATACATAATAT
* *
47146800 ATATAAAAATAATA-
1 ATATATACATAATAT
47146814 ATAT-TA-A-AA-AT
1 ATATATACATAATAT
47146825 ATATATACATAATAT
1 ATATATACATAATAT
47146840 ATATATA
1 ATATATA
47146847 GAATATATAC
Statistics
Matches: 38, Mismatches: 4, Indels: 10
0.73 0.08 0.19
Matches are distributed among these distances:
10 1 0.03
11 6 0.16
12 3 0.08
13 2 0.05
14 6 0.16
15 20 0.53
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (15 bp):
ATATATACATAATAT
Found at i:47147296 original size:21 final size:21
Alignment explanation
Indices: 47147254--47147299 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 21
47147244 AATATGCATG
47147254 TATTAAAAATAATAATAATAA
1 TATTAAAAATAATAATAATAA
*
47147275 TATTTAAAAAATAATTATTAATAA
1 TA-TT-AAAAATAA-TAATAATAA
47147299 T
1 T
47147300 GTTACATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 2 0.10
22 2 0.10
23 8 0.38
24 9 0.43
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (21 bp):
TATTAAAAATAATAATAATAA
Found at i:47147390 original size:25 final size:24
Alignment explanation
Indices: 47147361--47147425 Score: 69
Period size: 24 Copynumber: 2.6 Consensus size: 24
47147351 AACTAATACT
*
47147361 AATAATAGTAAAACTAATAATATA-A
1 AATAATA-TAAAA-TAAAAATATAGA
*
47147386 CATAATATAAAATAAAAATATAGA
1 AATAATATAAAATAAAAATATAGA
47147410 AATAATACTAATAATA
1 AATAATA-TAA-AATA
47147426 TATACGAAGA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
23 9 0.26
24 12 0.35
25 9 0.26
26 4 0.12
ACGTcount: A:0.65, C:0.05, G:0.03, T:0.28
Consensus pattern (24 bp):
AATAATATAAAATAAAAATATAGA
Found at i:47149010 original size:21 final size:21
Alignment explanation
Indices: 47148984--47149032 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
47148974 TAAAATCTGC
**
47148984 AACTTTAATGTGCTCCACTGT
1 AACTTTAATCAGCTCCACTGT
*
47149005 AACTTTGATCAGCTCCACTGT
1 AACTTTAATCAGCTCCACTGT
47149026 AACTTTA
1 AACTTTA
47149033 GGGCTCTGCT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.27, C:0.24, G:0.12, T:0.37
Consensus pattern (21 bp):
AACTTTAATCAGCTCCACTGT
Found at i:47149304 original size:14 final size:14
Alignment explanation
Indices: 47149281--47149310 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
47149271 TTGATTTTTG
*
47149281 AAACATAAATTGAA
1 AAACAGAAATTGAA
47149295 AAACAGAAATTGAA
1 AAACAGAAATTGAA
47149309 AA
1 AA
47149311 TACCTCAACG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.67, C:0.07, G:0.10, T:0.17
Consensus pattern (14 bp):
AAACAGAAATTGAA
Found at i:47149323 original size:85 final size:86
Alignment explanation
Indices: 47149153--47149469 Score: 424
Period size: 85 Copynumber: 3.7 Consensus size: 86
47149143 CATGTGACCC
* * * * *
47149153 GAGGCTCCACTCACCTCTCACAATATGA-TCTGACTTTTGATAAAAACAGAATTTGAAAAATAGA
1 GAGGCTCAACTCACCTCTCACAATATGAGT-TGACTTTT--T-GAAACATAAATTGAAAAACAGA
*
47149217 AACTGAAAATACCTCAGCGTGTCCT
62 AATTGAAAATACCTCAGCGTGTCCT
47149242 GAGGCTCAACTCACCTCTCACAATATGAGTTGA-TTTTTGAAACATAAATTGAAAAACAGAAATT
1 GAGGCTCAACTCACCTCTCACAATATGAGTTGACTTTTTGAAACATAAATTGAAAAACAGAAATT
* *
47149306 GAAAATACCTCAACGTGTCTT
66 GAAAATACCTCAGCGTGTCCT
* *
47149327 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAACGTAAATTGAAAAACAGAAATT
1 GAGGCTCAACTCACCTCTCACAATATGAGTTGACTTTTTGAAACATAAATTGAAAAACAGAAATT
* *
47149391 AAAAATACCTCAGCGTGTCCC
66 GAAAATACCTCAGCGTGTCCT
* * *
47149412 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAAAAATTGAAAA
1 GAGGCTCAACTCACCTCTCACAATATGAGTTGACTTTTTG-AA-ACATAAATTGAAAA
47149470 TTACCTCAGC
Statistics
Matches: 208, Mismatches: 16, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
85 152 0.73
86 7 0.03
87 2 0.01
88 16 0.08
89 30 0.14
90 1 0.00
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (86 bp):
GAGGCTCAACTCACCTCTCACAATATGAGTTGACTTTTTGAAACATAAATTGAAAAACAGAAATT
GAAAATACCTCAGCGTGTCCT
Found at i:47149497 original size:75 final size:74
Alignment explanation
Indices: 47149375--47149612 Score: 365
Period size: 75 Copynumber: 3.2 Consensus size: 74
47149365 GAAACGTAAA
* *
47149375 TTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
47149440 GTTGATTTT
66 GTTGATTTT
*
47149449 TTGAAAGACAAAAATTGAAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAGACAGAAATTGAAAA-TACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
47149514 AGTTGATTTTTTT
65 AGTTGA---TTTT
* **
47149527 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
47149592 GTTGA-TTT
66 GTTGATTTT
47149600 TTG-AA-ACAGAAAT
1 TTGAAAGACAGAAAT
47149613 AAAAACATCA
Statistics
Matches: 153, Mismatches: 7, Indels: 11
0.89 0.04 0.06
Matches are distributed among these distances:
71 8 0.05
72 2 0.01
73 6 0.04
74 18 0.12
75 49 0.32
77 46 0.30
78 24 0.16
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.29
Consensus pattern (74 bp):
TTGAAAGACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTT
Found at i:47149572 original size:77 final size:77
Alignment explanation
Indices: 47149375--47149601 Score: 370
Period size: 77 Copynumber: 3.0 Consensus size: 77
47149365 GAAACGTAAA
* *
47149375 TTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
47149440 GTTGA---TTTT
66 GTTGATTTTTTT
*
47149449 TTGAAAGACAAAAATTGAAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAGACAGAAATTGAAAA-TACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
47149514 AGTTGATTTTTTT
65 AGTTGATTTTTTT
* **
47149527 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
47149592 GTTGATTTTT
66 GTTGATTTTT
47149602 GAAACAGAAA
Statistics
Matches: 142, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
74 18 0.13
75 49 0.35
77 51 0.36
78 24 0.17
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.30
Consensus pattern (77 bp):
TTGAAAGACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTTT
Found at i:47149573 original size:152 final size:152
Alignment explanation
Indices: 47149290--47149605 Score: 447
Period size: 152 Copynumber: 2.0 Consensus size: 152
47149280 GAAACATAAA
* **
47149290 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
*
47149355 GTTGATTTTTGAAACGTAAATTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCCGAGGCTCA
66 GTTGATTTTT---A--T-AATTGAAAAACAGAAATTAAAAATACCTCAACGTGTCCCGAGGCTCA
47149420 ACTCACCTCTCGCAATATGAGTTGATTTT
125 ACTCACCTCTCGCAATATGAGTTGA-TTT
* *
47149449 TTGAAAGACAAAAATTGAAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAAAAATTGAAAA-TACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
* * * **
47149514 AGTTGATTTTT-T-TTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA
65 AGTTGATTTTTATAATTGAAAAACAGAAATTAAAAATACCTCAACGTGTCCCGAGGCTCAACTCA
47149577 CCTCTCGCAATATGAGTTGATTT
130 CCTCTCGCAATATGAGTTGATTT
47149600 TTGAAA
1 TTGAAA
47149606 CAGAAATAAA
Statistics
Matches: 145, Mismatches: 11, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
151 9 0.06
152 65 0.45
154 1 0.01
159 19 0.13
160 51 0.35
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.29
Consensus pattern (152 bp):
TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTATAATTGAAAAACAGAAATTAAAAATACCTCAACGTGTCCCGAGGCTCAACTCAC
CTCTCGCAATATGAGTTGATTT
Found at i:47157934 original size:22 final size:22
Alignment explanation
Indices: 47157906--47157950 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
47157896 AATGGATGAA
*
47157906 TGAATAAATGACAAATGAATGT
1 TGAATAAATAACAAATGAATGT
*
47157928 TGAATAAATAACGAATGAATGT
1 TGAATAAATAACAAATGAATGT
47157950 T
1 T
47157951 AGTCATGAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.04, G:0.18, T:0.29
Consensus pattern (22 bp):
TGAATAAATAACAAATGAATGT
Found at i:47162008 original size:23 final size:23
Alignment explanation
Indices: 47161977--47162020 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
47161967 ATTGAGTATT
* *
47161977 AAAAGTATATATATAATATAGAC
1 AAAAATATATACATAATATAGAC
*
47162000 AAAAATATATGCATAATATAG
1 AAAAATATATACATAATATAG
47162021 TATTGAAAGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.57, C:0.05, G:0.09, T:0.30
Consensus pattern (23 bp):
AAAAATATATACATAATATAGAC
Found at i:47162097 original size:13 final size:12
Alignment explanation
Indices: 47162077--47162198 Score: 76
Period size: 13 Copynumber: 10.1 Consensus size: 12
47162067 GTGATATTAA
47162077 AAATATATACAT
1 AAATATATACAT
* *
47162089 AACATATATAAAA
1 AA-ATATATACAT
*
47162102 AAATAATATTA-AA
1 AAAT-ATA-TACAT
47162115 AATATATATACAT
1 AA-ATATATACAT
*
47162128 -AATATATATAT
1 AAATATATACAT
47162139 AGAATATATACAT
1 A-AATATATACAT
*
47162152 -AATATAGTA-TT
1 AAATATA-TACAT
47162163 AAAATATATACAT
1 -AAATATATACAT
*
47162176 -AACATATACAT
1 AAATATATACAT
*
47162187 -AACATATACAT
1 AAATATATACAT
47162198 A
1 A
47162199 TTAGAAATGA
Statistics
Matches: 90, Mismatches: 8, Indels: 24
0.74 0.07 0.20
Matches are distributed among these distances:
11 37 0.41
12 11 0.12
13 38 0.42
14 4 0.04
ACGTcount: A:0.58, C:0.07, G:0.02, T:0.33
Consensus pattern (12 bp):
AAATATATACAT
Found at i:47162102 original size:24 final size:23
Alignment explanation
Indices: 47162078--47162194 Score: 92
Period size: 24 Copynumber: 4.8 Consensus size: 23
47162068 TGATATTAAA
* *
47162078 AATATATACATAACATATATAAAAA
1 AATATATA-ATAACATATAT-ACAT
* *
47162103 AATAATATTAAAAATATATATACAT
1 AAT-ATA-TAATAACATATATACAT
47162128 AATATATATATAGA-ATATATACAT
1 AATATATA-ATA-ACATATATACAT
* *
47162152 AATATAGTATTAAAATATATACAT
1 AATATA-TAATAACATATATACAT
*
47162176 AACATATACATAACATATA
1 AATATATA-ATAACATATA
47162195 CATATTAGAA
Statistics
Matches: 76, Mismatches: 9, Indels: 15
0.76 0.09 0.15
Matches are distributed among these distances:
23 5 0.07
24 46 0.61
25 11 0.14
26 12 0.16
27 2 0.03
ACGTcount: A:0.58, C:0.07, G:0.02, T:0.33
Consensus pattern (23 bp):
AATATATAATAACATATATACAT
Found at i:47162117 original size:12 final size:13
Alignment explanation
Indices: 47162070--47162136 Score: 52
Period size: 13 Copynumber: 5.3 Consensus size: 13
47162060 GAATAATGTG
47162070 ATATTAAAAATAT
1 ATATTAAAAATAT
* *
47162083 ATA-CATAACATAT
1 ATATTA-AAAATAT
*
47162096 ATA-AAAAAATA-
1 ATATTAAAAATAT
47162107 ATATTAAAAATAT
1 ATATTAAAAATAT
*
47162120 ATA-TACATAATAT
1 ATATTA-AAAATAT
47162133 ATAT
1 ATAT
47162137 ATAGAATATA
Statistics
Matches: 43, Mismatches: 6, Indels: 9
0.74 0.10 0.16
Matches are distributed among these distances:
11 3 0.07
12 15 0.35
13 25 0.58
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.34
Consensus pattern (13 bp):
ATATTAAAAATAT
Found at i:47162132 original size:11 final size:11
Alignment explanation
Indices: 47162118--47162198 Score: 81
Period size: 11 Copynumber: 7.0 Consensus size: 11
47162108 TATTAAAAAT
47162118 ATATATACATA
1 ATATATACATA
*
47162129 ATATATATATAGA
1 ATATATACAT--A
47162142 ATATATACATA
1 ATATATACATA
* *
47162153 ATATAGTATTAAA
1 ATATA-TA-CATA
47162166 ATATATACATA
1 ATATATACATA
*
47162177 ACATATACATA
1 ATATATACATA
*
47162188 ACATATACATA
1 ATATATACATA
47162199 TTAGAAATGA
Statistics
Matches: 59, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
11 38 0.64
12 4 0.07
13 17 0.29
ACGTcount: A:0.54, C:0.09, G:0.02, T:0.35
Consensus pattern (11 bp):
ATATATACATA
Found at i:47162197 original size:6 final size:6
Alignment explanation
Indices: 47162168--47162199 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
47162158 GTATTAAAAT
47162168 ATATAC ATA-AC ATATAC ATA-AC ATATAC ATAT
1 ATATAC ATATAC ATATAC ATATAC ATATAC ATAT
47162200 TAGAAATGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
5 10 0.42
6 14 0.58
ACGTcount: A:0.53, C:0.16, G:0.00, T:0.31
Consensus pattern (6 bp):
ATATAC
Found at i:47162254 original size:11 final size:11
Alignment explanation
Indices: 47162238--47162263 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
47162228 TACTATTAAT
47162238 AATACTACATA
1 AATACTACATA
47162249 AATACTACATA
1 AATACTACATA
47162260 AATA
1 AATA
47162264 TGTACATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (11 bp):
AATACTACATA
Found at i:47162479 original size:13 final size:12
Alignment explanation
Indices: 47162454--47162488 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
47162444 AAAAAATTAT
47162454 TAATAATACTATA
1 TAATAATA-TATA
47162467 TAATATATATATA
1 TAATA-ATATATA
47162480 TAATAATAT
1 TAATAATAT
47162489 GAATGTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 4 0.19
13 14 0.67
14 3 0.14
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (12 bp):
TAATAATATATA
Found at i:47165782 original size:23 final size:22
Alignment explanation
Indices: 47165752--47165794 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 22
47165742 TTAAAGTGTA
47165752 AATATGAAAA-ATTTGAAGGGAT
1 AATATGAAAATATTT-AAGGGAT
47165774 AATAGTGAAAATATTTAAGGG
1 AATA-TGAAAATATTTAAGGG
47165795 TGGAATGATC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 4 0.21
23 11 0.58
24 4 0.21
ACGTcount: A:0.49, C:0.00, G:0.23, T:0.28
Consensus pattern (22 bp):
AATATGAAAATATTTAAGGGAT
Found at i:47166022 original size:29 final size:30
Alignment explanation
Indices: 47165989--47166060 Score: 71
Period size: 31 Copynumber: 2.4 Consensus size: 30
47165979 TTGGTAATAT
*
47165989 TTTATAATTATTTAATTAGATA-ATTATTA
1 TTTATAATTATTTAATAAGATATATTATTA
*
47166018 TTTATTTAA-TATTTTAATAAGATATTTTATTA
1 TTTA--TAATTA-TTTAATAAGATATATTATTA
47166050 TTT-T-ATTATTT
1 TTTATAATTATTT
47166061 TATTTAGTCT
Statistics
Matches: 36, Mismatches: 2, Indels: 11
0.73 0.04 0.22
Matches are distributed among these distances:
28 4 0.11
29 7 0.19
30 2 0.06
31 14 0.39
32 9 0.25
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (30 bp):
TTTATAATTATTTAATAAGATATATTATTA
Found at i:47166051 original size:8 final size:8
Alignment explanation
Indices: 47166040--47166064 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
47166030 TTTAATAAGA
47166040 TATTTTAT
1 TATTTTAT
47166048 TATTTTAT
1 TATTTTAT
47166056 TATTTTAT
1 TATTTTAT
47166064 T
1 T
47166065 TAGTCTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:47168356 original size:43 final size:43
Alignment explanation
Indices: 47168211--47168470 Score: 204
Period size: 43 Copynumber: 6.1 Consensus size: 43
47168201 TTATGTGAAA
* * *
47168211 AAACGCCGCTAAAGAACAAGACCTTTAGCGGCGCTTTTTCCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCACTTTTTTCAC
** * * * * * *
47168254 AATTGGCACTATAGAACATGACCTTTAGCATG--CTTTTATCAT
1 AAACGCCGCTAAAGAACATGACCTTTAGC-GGCACTTTTTTCAC
* * * *
47168296 AAATGCTGCTAAAGAACATAACCTTTAGCGGCACTTTTTTTAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCACTTTTTTCAC
* * * *
47168339 AAACGCCGCTATAGAACATGTCCTTTAGCGGCACTTTTATGAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCACTTTTTTCAC
* * ** *
47168382 AAATGTCGCTAAA-AAGCATGACCTTTAGCGGCGTTTTTTTTAC
1 AAACGCCGCTAAAGAA-CATGACCTTTAGCGGCACTTTTTTCAC
* * * * *
47168425 AAACACCACTAAAGAACA-GTACCTTTAGCGCCGCTTTTATCAC
1 AAACGCCGCTAAAGAACATG-ACCTTTAGCGGCACTTTTTTCAC
47168468 AAA
1 AAA
47168471 TTCTGCTAAA
Statistics
Matches: 168, Mismatches: 43, Indels: 12
0.75 0.19 0.05
Matches are distributed among these distances:
41 1 0.01
42 33 0.20
43 131 0.78
44 3 0.02
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.29
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCGGCACTTTTTTCAC
Found at i:47168410 original size:86 final size:86
Alignment explanation
Indices: 47168218--47168480 Score: 286
Period size: 86 Copynumber: 3.1 Consensus size: 86
47168208 AAAAAACGCC
* ** ** * *
47168218 GCTAAAGAACAAGACCTTTAGCGGCGCTTTTTCCACAATTGGCACTATAGAACATGACCTTTAGC
1 GCTAAAGAACATGACCTTTAGCGGCGCTTTTTTTACAAACGCCACTATAGAACATGTCCTTTAGC
* *
47168283 ATG-CTTTTATCATAAATG-CT
66 -GGCCTTTTATCACAAATGTCT
* * *
47168303 GCTAAAGAACATAACCTTTAGCGGCACTTTTTTTACAAACGCCGCTATAGAACATGTCCTTTAGC
1 GCTAAAGAACATGACCTTTAGCGGCGCTTTTTTTACAAACGCCACTATAGAACATGTCCTTTAGC
*
47168368 GGCACTTTTATGACAAATGTC-
66 GGC-CTTTTATCACAAATGTCT
* * *
47168389 GCTAAA-AAGCATGACCTTTAGCGGCGTTTTTTTTACAAACACCACTAAAGAACA-GTACCTTTA
1 GCTAAAGAA-CATGACCTTTAGCGGCGCTTTTTTTACAAACGCCACTATAGAACATGT-CCTTTA
*
47168452 GCGCCGCTTTTATCACAAAT-TCT
64 GCGGC-CTTTTATCACAAATGTCT
47168475 GCTAAA
1 GCTAAA
47168481 AGTATCGTTC
Statistics
Matches: 150, Mismatches: 22, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
84 1 0.01
85 61 0.41
86 87 0.58
87 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (86 bp):
GCTAAAGAACATGACCTTTAGCGGCGCTTTTTTTACAAACGCCACTATAGAACATGTCCTTTAGC
GGCCTTTTATCACAAATGTCT
Found at i:47168831 original size:21 final size:21
Alignment explanation
Indices: 47168806--47168855 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
47168796 TTCTGCTCTG
47168806 CTCTGCTTCCCTCACTGCTAC
1 CTCTGCTTCCCTCACTGCTAC
* *
47168827 CTCTGCTTCCCTCGCTGCTGC
1 CTCTGCTTCCCTCACTGCTAC
*
47168848 CTCCGCTT
1 CTCTGCTT
47168856 TAAGCTATAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.04, C:0.48, G:0.14, T:0.34
Consensus pattern (21 bp):
CTCTGCTTCCCTCACTGCTAC
Found at i:47174282 original size:9 final size:9
Alignment explanation
Indices: 47174268--47174431 Score: 88
Period size: 9 Copynumber: 17.8 Consensus size: 9
47174258 TAAGTATAAT
47174268 TAAGTTATG
1 TAAGTTATG
47174277 TAAGTTATG
1 TAAGTTATG
* * *
47174286 ATATGATATA
1 -TAAGTTATG
* *
47174296 T-ATTTATA
1 TAAGTTATG
47174304 T-A-TTATG
1 TAAGTTATG
47174311 TAAGTTATG
1 TAAGTTATG
*
47174320 TAAGTAATG
1 TAAGTTATG
*
47174329 TGAGTTATG
1 TAAGTTATG
47174338 TAAGTTATG
1 TAAGTTATG
* *
47174347 ATATGATATATATA
1 -TA--A-GT-TATG
47174361 TAAGTTAT-
1 TAAGTTATG
47174369 TAAGTTATG
1 TAAGTTATG
*
47174378 TATGTTATG
1 TAAGTTATG
47174387 -AGAGTTATG
1 TA-AGTTATG
47174396 TAAGTTATG
1 TAAGTTATG
* *
47174405 ATATGATATATA
1 -TAAG-T-TATG
47174417 TAAGTTAT-
1 TAAGTTATG
47174425 TAAGTTA
1 TAAGTTA
47174432 AGATCCAAAG
Statistics
Matches: 122, Mismatches: 19, Indels: 29
0.72 0.11 0.17
Matches are distributed among these distances:
7 5 0.04
8 23 0.19
9 65 0.53
10 14 0.11
11 5 0.04
12 4 0.03
13 3 0.02
14 3 0.02
ACGTcount: A:0.37, C:0.00, G:0.18, T:0.45
Consensus pattern (9 bp):
TAAGTTATG
Found at i:47174401 original size:58 final size:58
Alignment explanation
Indices: 47174270--47174431 Score: 240
Period size: 58 Copynumber: 2.8 Consensus size: 58
47174260 AGTATAATTA
*
47174270 AGTTATGTAAGTTATGATATGATATATATTTATATA-TTATGTAAGTTATGTAAGTAATGTG
1 AGTTATGTAAGTTATGATATGATATATA--TATA-AGTTAT-TAAGTTATGTAAGTAATGAG
* *
47174331 AGTTATGTAAGTTATGATATGATATATATATAAGTTATTAAGTTATGTATGTTATGAG
1 AGTTATGTAAGTTATGATATGATATATATATAAGTTATTAAGTTATGTAAGTAATGAG
47174389 AGTTATGTAAGTTATGATATG--ATATATATAAGTTATTAAGTTA
1 AGTTATGTAAGTTATGATATGATATATATATAAGTTATTAAGTTA
47174432 AGATCCAAAG
Statistics
Matches: 97, Mismatches: 3, Indels: 7
0.91 0.03 0.07
Matches are distributed among these distances:
56 22 0.23
58 39 0.40
59 8 0.08
61 28 0.29
ACGTcount: A:0.37, C:0.00, G:0.18, T:0.45
Consensus pattern (58 bp):
AGTTATGTAAGTTATGATATGATATATATATAAGTTATTAAGTTATGTAAGTAATGAG
Found at i:47174604 original size:18 final size:18
Alignment explanation
Indices: 47174583--47174618 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
47174573 TCATTTATAG
47174583 CAAAGTTATCTTTTATTC
1 CAAAGTTATCTTTTATTC
47174601 CAAAGTTATCTTTTATTC
1 CAAAGTTATCTTTTATTC
47174619 TTTAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.17, G:0.06, T:0.50
Consensus pattern (18 bp):
CAAAGTTATCTTTTATTC
Found at i:47174869 original size:10 final size:10
Alignment explanation
Indices: 47174838--47174875 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
47174828 ATATTGATAA
47174838 AAAAATATTT
1 AAAAATATTT
* *
47174848 ATAAGT-TTT
1 AAAAATATTT
47174857 AAAAATATTT
1 AAAAATATTT
47174867 AAAAATATT
1 AAAAATATT
47174876 AAATATTAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
9 7 0.30
10 16 0.70
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (10 bp):
AAAAATATTT
Found at i:47174877 original size:19 final size:19
Alignment explanation
Indices: 47174838--47174878 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
47174828 ATATTGATAA
* * *
47174838 AAAAATATTTATAAGTTTT
1 AAAAATATTTAAAAATATT
47174857 AAAAATATTTAAAAATATT
1 AAAAATATTTAAAAATATT
47174876 AAA
1 AAA
47174879 TATTAAAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (19 bp):
AAAAATATTTAAAAATATT
Found at i:47174900 original size:23 final size:24
Alignment explanation
Indices: 47174872--47174928 Score: 64
Period size: 23 Copynumber: 2.5 Consensus size: 24
47174862 TATTTAAAAA
* *
47174872 TATTAAATATTAAAA-TTAAACAT
1 TATTAAATATAAAAAGTTAAACAG
**
47174895 TATT-AATATAAAAAGTTAATTAG
1 TATTAAATATAAAAAGTTAAACAG
47174918 TATTAAATATA
1 TATTAAATATA
47174929 TACTTTTAGT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
22 9 0.32
23 13 0.46
24 6 0.21
ACGTcount: A:0.54, C:0.02, G:0.04, T:0.40
Consensus pattern (24 bp):
TATTAAATATAAAAAGTTAAACAG
Found at i:47178145 original size:21 final size:21
Alignment explanation
Indices: 47178121--47178160 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
47178111 CTATAAAACA
47178121 CTAAATCAT-AAACCCTAAATC
1 CTAAA-CATAAAACCCTAAATC
*
47178142 CTAAACCTAAAACCCTAAA
1 CTAAACATAAAACCCTAAA
47178161 CCCAAAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.50, C:0.30, G:0.00, T:0.20
Consensus pattern (21 bp):
CTAAACATAAAACCCTAAATC
Found at i:47178158 original size:14 final size:14
Alignment explanation
Indices: 47178129--47178167 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
47178119 CACTAAATCA
* *
47178129 TAAACCCTAAATCC
1 TAAACCCAAAACCC
*
47178143 TAAACCTAAAACCC
1 TAAACCCAAAACCC
47178157 TAAACCCAAAA
1 TAAACCCAAAA
47178168 TAACAAATCT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.51, C:0.33, G:0.00, T:0.15
Consensus pattern (14 bp):
TAAACCCAAAACCC
Found at i:47178160 original size:28 final size:28
Alignment explanation
Indices: 47178129--47178223 Score: 95
Period size: 28 Copynumber: 3.4 Consensus size: 28
47178119 CACTAAATCA
* *
47178129 TAAACCCTAAATCCTAAACCTAAAACCC
1 TAAACCCTAAATACTAAACCTTAAACCC
* * *
47178157 TAAACCCAAAATAAC-AAATCTTAACCCC
1 TAAACCCTAAAT-ACTAAACCTTAAACCC
*
47178185 TAAA-CCTAAATTACTAAACATTAAACCC
1 TAAACCCTAAA-TACTAAACCTTAAACCC
*
47178213 TAAACTCTAAA
1 TAAACCCTAAA
47178224 GCCTAAAATC
Statistics
Matches: 53, Mismatches: 10, Indels: 7
0.76 0.14 0.10
Matches are distributed among these distances:
27 7 0.13
28 40 0.75
29 6 0.11
ACGTcount: A:0.49, C:0.29, G:0.00, T:0.21
Consensus pattern (28 bp):
TAAACCCTAAATACTAAACCTTAAACCC
Found at i:47192429 original size:50 final size:48
Alignment explanation
Indices: 47192318--47192497 Score: 154
Period size: 50 Copynumber: 3.7 Consensus size: 48
47192308 CGGGTAAGGT
* * * * * *
47192318 GCCGATGCCATGTCCCAAACATGGTATCAAACTTA-CTATCATCATCGA-G
1 GCCGATGCCATGTCCCAGACATGGTCTTACAC-TAGCTCTCATAAT--ATG
* ** *
47192367 GCTGATGCCATGTCTTAGACATGGTCTTACACTAGCTCTCGCATATTCAT-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT--CATAAT-ATG
* * *
47192417 GCCGATGCCATGTCCCAGACATGGTCTTACAATGGCTCTCATAATGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATATG
47192465 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAG
47192498 TTCACACAAG
Statistics
Matches: 106, Mismatches: 20, Indels: 13
0.76 0.14 0.09
Matches are distributed among these distances:
46 10 0.09
47 15 0.14
48 14 0.13
49 28 0.26
50 35 0.33
51 4 0.04
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATATG
Found at i:47202517 original size:46 final size:46
Alignment explanation
Indices: 47202463--47202584 Score: 165
Period size: 46 Copynumber: 2.6 Consensus size: 46
47202453 CGTAGCCGTC
* *
47202463 GCATGTCCCAGACATGTCTTATACTGG-TTTACGTCCCGAGGTCGAT
1 GCATGTCCCAGACATGTCTTATACTGGCATT-CGTCCCAAGGTCGAT
* *
47202509 GCATGTCCCAGACATGTCTTATACTGGCATTCGTCTCAATGTCGAT
1 GCATGTCCCAGACATGTCTTATACTGGCATTCGTCCCAAGGTCGAT
*
47202555 GCCATGTCCCAGACATGGTCTTACACTGGC
1 G-CATGTCCCAGACAT-GTCTTATACTGGC
47202585 TCTCATAATG
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
46 40 0.59
47 16 0.24
48 12 0.18
ACGTcount: A:0.20, C:0.28, G:0.22, T:0.30
Consensus pattern (46 bp):
GCATGTCCCAGACATGTCTTATACTGGCATTCGTCCCAAGGTCGAT
Found at i:47208896 original size:45 final size:46
Alignment explanation
Indices: 47208797--47209056 Score: 162
Period size: 45 Copynumber: 5.8 Consensus size: 46
47208787 GCTTGAAGGA
* * * * **
47208797 AACGAATAAGA-CATGGTTGAAAGATATTATGGCAGTAT-ACCG-G
1 AACGAATAAGACCATAGTTGAAAGACACTATGGCATTATAATGGAG
47208840 AACTGAATAAGACCATAGTTGAAAGACACTATGGCATTATAATGGA-
1 AAC-GAATAAGACCATAGTTGAAAGACACTATGGCATTATAATGGAG
** ** ** * * * *
47208886 AACGTGTAAGACCATAGCAGAAAGACGTTGTGGCATCATGACT-CAG
1 AACGAATAAGACCATAGTTGAAAGACACTATGGCATTAT-AATGGAG
* * * * *
47208932 -ACGAACAAGACCATCGTTGAAAGACATTATGGCA-T-CAAGGCGAG
1 AACGAATAAGACCATAGTTGAAAGACACTATGGCATTATAATG-GAG
* * * *
47208976 AATGTATAAGACCATGGTTGAAAGACACTATGGCATTA-AGA-CGAG
1 AACGAATAAGACCATAGTTGAAAGACACTATGGCATTATA-ATGGAG
* * *
47209021 AATGAATAAGACGATGGTTGAAAGACACTATGGCAT
1 AACGAATAAGACCATAGTTGAAAGACACTATGGCAT
47209057 CCTTCAATCA
Statistics
Matches: 168, Mismatches: 37, Indels: 22
0.74 0.16 0.10
Matches are distributed among these distances:
42 1 0.01
43 3 0.02
44 10 0.06
45 144 0.86
46 9 0.05
47 1 0.01
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
AACGAATAAGACCATAGTTGAAAGACACTATGGCATTATAATGGAG
Found at i:47209180 original size:12 final size:12
Alignment explanation
Indices: 47209163--47209187 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
47209153 TGAATATGTG
47209163 AAAATAAAATAA
1 AAAATAAAATAA
47209175 AAAATAAAATAA
1 AAAATAAAATAA
47209187 A
1 A
47209188 GAACACACAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (12 bp):
AAAATAAAATAA
Found at i:47222622 original size:27 final size:27
Alignment explanation
Indices: 47222584--47222644 Score: 122
Period size: 27 Copynumber: 2.3 Consensus size: 27
47222574 TGATCTATAA
47222584 AATTTCAAATTAATCTCATTCAAACAC
1 AATTTCAAATTAATCTCATTCAAACAC
47222611 AATTTCAAATTAATCTCATTCAAACAC
1 AATTTCAAATTAATCTCATTCAAACAC
47222638 AATTTCA
1 AATTTCA
47222645 TTCAATTTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.44, C:0.21, G:0.00, T:0.34
Consensus pattern (27 bp):
AATTTCAAATTAATCTCATTCAAACAC
Found at i:47222655 original size:31 final size:30
Alignment explanation
Indices: 47222591--47222656 Score: 102
Period size: 27 Copynumber: 2.3 Consensus size: 30
47222581 TAAAATTTCA
47222591 AATTAATCTCATTCAAACACAATTTCA---
1 AATTAATCTCATTCAAACACAATTTCATTC
47222618 AATTAATCTCATTCAAACACAATTTCATTC
1 AATTAATCTCATTCAAACACAATTTCATTC
47222648 AATTTAATC
1 AA-TTAATC
47222657 CAACAACACA
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
27 27 0.77
30 2 0.06
31 6 0.17
ACGTcount: A:0.42, C:0.21, G:0.00, T:0.36
Consensus pattern (30 bp):
AATTAATCTCATTCAAACACAATTTCATTC
Found at i:47234554 original size:45 final size:45
Alignment explanation
Indices: 47234504--47234592 Score: 178
Period size: 45 Copynumber: 2.0 Consensus size: 45
47234494 ATGTATTAAT
47234504 ATATTTCATATTAAAATGATATAATAATAACATATAATATATTTC
1 ATATTTCATATTAAAATGATATAATAATAACATATAATATATTTC
47234549 ATATTTCATATTAAAATGATATAATAATAACATATAATATATTT
1 ATATTTCATATTAAAATGATATAATAATAACATATAATATATTT
47234593 AATAATATAG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.43
Consensus pattern (45 bp):
ATATTTCATATTAAAATGATATAATAATAACATATAATATATTTC
Found at i:47239158 original size:12 final size:12
Alignment explanation
Indices: 47239133--47239168 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
47239123 TTCTAAAATA
*
47239133 AAATTTAAATTT
1 AAATTTAAACTT
47239145 AAATTTAAACTT
1 AAATTTAAACTT
*
47239157 AAACTTAAACTT
1 AAATTTAAACTT
47239169 TTTATTATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
AAATTTAAACTT
Found at i:47240140 original size:17 final size:16
Alignment explanation
Indices: 47240077--47240141 Score: 53
Period size: 16 Copynumber: 4.0 Consensus size: 16
47240067 CCTAAAAAAA
* *
47240077 TTAAAAATTATAATTT
1 TTAAAAAATAAAATTT
47240093 TTAAAAAAT-AAA-TT
1 TTAAAAAATAAAATTT
* *
47240107 TTAACAAGATTATAATTTT
1 TTAA-AA-AATA-AAATTT
47240126 TTAAAAAATAAAATTT
1 TTAAAAAATAAAATTT
47240142 CTTTAAAATT
Statistics
Matches: 38, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
14 6 0.16
15 4 0.11
16 15 0.39
17 3 0.08
18 4 0.11
19 6 0.16
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (16 bp):
TTAAAAAATAAAATTT
Found at i:47240664 original size:23 final size:24
Alignment explanation
Indices: 47240631--47240678 Score: 73
Period size: 22 Copynumber: 2.0 Consensus size: 24
47240621 AGTTTTAACT
47240631 ATAAAAAAATTTT-AAAT-TAAAA
1 ATAAAAAAATTTTAAAATATAAAA
47240653 ATAAAAATAATTTTAAAATATAAAA
1 ATAAAAA-AATTTTAAAATATAAAA
47240678 A
1 A
47240679 AATTTCCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 7 0.30
23 6 0.26
24 4 0.17
25 6 0.26
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (24 bp):
ATAAAAAAATTTTAAAATATAAAA
Found at i:47240670 original size:18 final size:18
Alignment explanation
Indices: 47240647--47240683 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
47240637 AAATTTTAAA
47240647 TTAAAA-ATAAAAATAATT
1 TTAAAATATAAAAA-AATT
47240665 TTAAAATATAAAAAAATT
1 TTAAAATATAAAAAAATT
47240683 T
1 T
47240684 CCAAATTTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (18 bp):
TTAAAATATAAAAAAATT
Found at i:47240689 original size:18 final size:19
Alignment explanation
Indices: 47240649--47240689 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
47240639 ATTTTAAATT
*
47240649 AAAA-ATAAAAATAATTTT
1 AAAATATAAAAATAATTTC
47240667 AAAATATAAAAA-AATTTC
1 AAAATATAAAAATAATTTC
*
47240685 CAAAT
1 AAAAT
47240690 TTCAATGTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (19 bp):
AAAATATAAAAATAATTTC
Found at i:47241213 original size:13 final size:14
Alignment explanation
Indices: 47241184--47241220 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
47241174 ATATTAATTT
47241184 ATTTTAAAAATAAA
1 ATTTTAAAAATAAA
*
47241198 ATTTTTAAAA-AAA
1 ATTTTAAAAATAAA
47241211 A-TTTAAAAAT
1 ATTTTAAAAAT
47241221 TGTTTATGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
12 7 0.35
13 4 0.20
14 9 0.45
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (14 bp):
ATTTTAAAAATAAA
Found at i:47242177 original size:18 final size:18
Alignment explanation
Indices: 47242150--47242226 Score: 63
Period size: 18 Copynumber: 4.3 Consensus size: 18
47242140 TTGAATATTG
*
47242150 TAAAAAATATTAAAATAT
1 TAAAATATATTAAAATAT
47242168 TAAAATATATTAAAATGA-
1 TAAAATATATTAAAAT-AT
*
47242186 CAAAATATA--AAAA-AT
1 TAAAATATATTAAAATAT
*
47242201 TATAAATAATTATTAAAATTT
1 TA-AAAT-A-TATTAAAATAT
47242222 TAAAA
1 TAAAA
47242227 AATTAATTGA
Statistics
Matches: 47, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
14 1 0.02
15 1 0.02
16 8 0.17
17 1 0.02
18 25 0.53
19 1 0.02
20 7 0.15
21 3 0.06
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.34
Consensus pattern (18 bp):
TAAAATATATTAAAATAT
Found at i:47242226 original size:8 final size:9
Alignment explanation
Indices: 47242152--47242226 Score: 50
Period size: 10 Copynumber: 8.4 Consensus size: 9
47242142 GAATATTGTA
*
47242152 AAAAATATT
1 AAAATTATT
47242161 AAAA-TATT
1 AAAATTATT
47242169 AAAATATATT
1 AAAAT-TATT
* *
47242179 AAAATGA-C
1 AAAATTATT
*
47242187 AAAA-TATAA
1 AAAATTAT-T
*
47242196 AAAATTATA
1 AAAATTATT
47242205 AATAATTATT
1 AA-AATTATT
47242215 AAAATT-TT
1 AAAATTATT
47242223 AAAA
1 AAAA
47242227 AATTAATTGA
Statistics
Matches: 55, Mismatches: 5, Indels: 13
0.75 0.07 0.18
Matches are distributed among these distances:
7 1 0.02
8 18 0.33
9 16 0.29
10 20 0.36
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.33
Consensus pattern (9 bp):
AAAATTATT
Found at i:47243129 original size:20 final size:18
Alignment explanation
Indices: 47243088--47243126 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
47243078 TTTATGATTA
*
47243088 TTTA-TAATTTTTACCAT
1 TTTAGTAATTTTTACAAT
47243105 TTTAGTAATATTTTACAAT
1 TTTAGTAAT-TTTTACAAT
47243124 TTT
1 TTT
47243127 TAGAATTATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 4 0.21
18 4 0.21
19 11 0.58
ACGTcount: A:0.31, C:0.08, G:0.03, T:0.59
Consensus pattern (18 bp):
TTTAGTAATTTTTACAAT
Found at i:47243264 original size:20 final size:22
Alignment explanation
Indices: 47243239--47243281 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 22
47243229 ATATTTATAA
*
47243239 TTTTTACCATT-TT-TAATATT
1 TTTTTACAATTCTTATAATATT
47243259 TTTTTACAATTCTTATAATATT
1 TTTTTACAATTCTTATAATATT
47243281 T
1 T
47243282 GAAATTTATG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 10 0.50
21 2 0.10
22 8 0.40
ACGTcount: A:0.28, C:0.09, G:0.00, T:0.63
Consensus pattern (22 bp):
TTTTTACAATTCTTATAATATT
Found at i:47245960 original size:19 final size:19
Alignment explanation
Indices: 47245936--47245976 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
47245926 TGTTAGATTT
47245936 TGATTTAAGGATTAAATTG
1 TGATTTAAGGATTAAATTG
* *
47245955 TGATTTAGGGATTGAATTG
1 TGATTTAAGGATTAAATTG
47245974 TGA
1 TGA
47245977 AAATGTTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.32, C:0.00, G:0.27, T:0.41
Consensus pattern (19 bp):
TGATTTAAGGATTAAATTG
Found at i:47246699 original size:35 final size:35
Alignment explanation
Indices: 47246604--47246688 Score: 143
Period size: 35 Copynumber: 2.4 Consensus size: 35
47246594 GATTAGTTCT
* *
47246604 TATGAGCAATAGTGTGTTTCAGATGGTTTAACTCG
1 TATGAGCATTAGTGTGTTTCAGATGGTTTAATTCG
47246639 TATGAGCATTAGTGTGTTTCAGATGGTTTAATTCG
1 TATGAGCATTAGTGTGTTTCAGATGGTTTAATTCG
*
47246674 TATGAGCATTGGTGT
1 TATGAGCATTAGTGT
47246689 ATTTTGGATG
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 47 1.00
ACGTcount: A:0.24, C:0.09, G:0.27, T:0.40
Consensus pattern (35 bp):
TATGAGCATTAGTGTGTTTCAGATGGTTTAATTCG
Found at i:47247674 original size:54 final size:54
Alignment explanation
Indices: 47247588--47247702 Score: 178
Period size: 54 Copynumber: 2.1 Consensus size: 54
47247578 CAAGTCAGTT
* *
47247588 AGTTACATGGCCTAGCATACGGCTTGGAACACGGGCA-TGTGGGGCTATTTCGAG
1 AGTTACACGGCCTAGCACACGGCTTGGAACACGGG-AGTGTGGGGCTATTTCGAG
* *
47247642 AGTTACACGGCCTAGCACACGGCTTGGCACACGGGAGTGTGGGGTTATTTCGAG
1 AGTTACACGGCCTAGCACACGGCTTGGAACACGGGAGTGTGGGGCTATTTCGAG
47247696 AGTTACA
1 AGTTACA
47247703 AGCCTGGTAC
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
53 1 0.02
54 55 0.98
ACGTcount: A:0.23, C:0.21, G:0.33, T:0.23
Consensus pattern (54 bp):
AGTTACACGGCCTAGCACACGGCTTGGAACACGGGAGTGTGGGGCTATTTCGAG
Found at i:47249093 original size:30 final size:30
Alignment explanation
Indices: 47249059--47249139 Score: 153
Period size: 30 Copynumber: 2.7 Consensus size: 30
47249049 TTTTTGAGCA
*
47249059 TAGGGGTAAAATGGTCATTTTGCCAAAGTC
1 TAGGGGCAAAATGGTCATTTTGCCAAAGTC
47249089 TAGGGGCAAAATGGTCATTTTGCCAAAGTC
1 TAGGGGCAAAATGGTCATTTTGCCAAAGTC
47249119 TAGGGGCAAAATGGTCATTTT
1 TAGGGGCAAAATGGTCATTTT
47249140 ATCGAAGATG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 50 1.00
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTGCCAAAGTC
Found at i:47249630 original size:46 final size:48
Alignment explanation
Indices: 47249486--47249799 Score: 283
Period size: 46 Copynumber: 6.6 Consensus size: 48
47249476 TTTGTGTGCT
* * *
47249486 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA-GACGAGAGCC
* ** ** * **
47249532 AGTGTAAGACCATGTCTGGGACATGGCATCAGTATTAAGACGAGTGGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGACGAGAGCC
47249580 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGACG-AGAGCC
* * *
47249626 AGTGTAAGA-CATGTCTGGGACAT-GCATCGG-CTACGAGA--TGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGAGACGAGAGCC
* * * *
47249670 AGTGTAAGACCATGTCTGGGACATGGCATCGGAAC-GGATATGCGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CCTCGAGA--CGAGAGCC
* * *
47249720 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGATGATGATAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA-GACGAGAGCC
*
47249769 AGTGTAAGACCATGTCCGGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
47249800 ACAACTGACC
Statistics
Matches: 216, Mismatches: 36, Indels: 29
0.77 0.13 0.10
Matches are distributed among these distances:
44 11 0.05
45 16 0.07
46 67 0.31
47 29 0.13
48 21 0.10
49 36 0.17
50 35 0.16
51 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGACGAGAGCC
Found at i:47249724 original size:94 final size:93
Alignment explanation
Indices: 47249486--47249799 Score: 299
Period size: 94 Copynumber: 3.3 Consensus size: 93
47249476 TTTGTGTGCT
47249486 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTAT-GAGAGCCAGTGTAAGACCATGTCT
1 AGTGTAAGACATGTCTGGGACATGCATCGG--ACGA-TATCGAGAGCCAGTGTAAGACCATGTCT
** * *
47249549 GGGACATGGCATCAGTATTAAGACGA-GTGGT-
63 GGGACATGGCATC-G-GCTACGACGATGTAGTC
* *
47249580 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGA-CGTA-AGCCAGTGTAAGA-CATGTCT
1 AGTGTAAGACATGTCTGGGACATGCATCGG--ACGATATCG-AGAGCCAGTGTAAGACCATGTCT
47249642 GGGACAT-GCATCGGCTACGA-GATGT-GTC
63 GGGACATGGCATCGGCTACGACGATGTAGTC
*
47249670 AGTGTAAGACCATGTCTGGGACATGGCATCGGAACGGATATGCGAGAGCTAGTGTAAGACCATGT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGG-AC-GATAT-CGAGAGCCAGTGTAAGACCATGT
* * *
47249735 TTGGGACATGGCATCGGCCT-CGATGATGATAGCC
61 CTGGGACATGGCATCGG-CTACGACGATG-TAGTC
*
47249769 AGTGTAAGACCATGTCCGGGACATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG
47249800 ACAACTGACC
Statistics
Matches: 191, Mismatches: 12, Indels: 29
0.82 0.05 0.12
Matches are distributed among these distances:
89 4 0.02
90 15 0.08
91 16 0.08
92 15 0.08
93 15 0.08
94 62 0.32
95 15 0.08
96 10 0.05
97 6 0.03
98 1 0.01
99 32 0.17
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (93 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGACGATATCGAGAGCCAGTGTAAGACCATGTCTGGG
ACATGGCATCGGCTACGACGATGTAGTC
Found at i:47256804 original size:776 final size:776
Alignment explanation
Indices: 47255209--47257002 Score: 2848
Period size: 776 Copynumber: 2.3 Consensus size: 776
47255199 TAATAAGAAA
* * * *
47255209 ATCAAGGACCTCAAAGCATGCAATAATAAGTTATTGGCCATGAAGTTGGATATCATGATCAAATA
1 ATCAAGGACCTCAAAGCAAGCAACAATAAGCTATTGGCCATGAAGTTGGATATCATGGTCAAATA
*
47255274 GCTTTAGTGATCCCTTTCCAATCATTGAAAAAAAAGAGGGAGTAGTGAAGTGAAGTATGATGGTT
66 GCTTCAGTGATCCCTTTCCAATCATTGAAAAAAAAGAGGGAGTAGTGAAGTGAAGTATGAT-GTT
* * *
47255339 TTTTTGGGACAATAATAAAAACAAACTTAGGGTTTCAATTCTCATTAGTCTAGTATGATAATTCT
130 TTTTTGGAACAATAATAAAAAAAAACTTAGGGTTTCAATTCTCATTAGTCTAGTATGGTAATTCT
* *
47255404 TCT-ATTATTTGCACAAATGCTCACTCAATCTAGAAATTTTGTACTCCTTTCCTTATTTTGAATC
195 TCTGCTT-TCTGCACAAATGCTCACTCAATCTAGAAATTTTGTACTCCTTTCCTTATTTTGAATC
* *
47255468 ATATATTATTGTCTTTTTTGTGTTAGAACATTAATTAATGGTTAAATTACTTTGAGATGAGGTAG
259 ATATATTATTCTCTTTTTTGTGTTAGAACATTAATTAATGGTTAAATTAATTTGAGATGAGGTAG
* *
47255533 TTGAGATCCTTTGATTAAGGGGGAGATCCTTAAGGGGAGAATTTGTAATTGTGATGATTTTATTT
324 TTGAGATCCATTGATTAAGGGGGAGATCCTTAAGGGGAGAATTTGTAACTGTGATGATTTTATTT
* * * *
47255598 TTCCCAATATATATTTATTCAAATATTGCTAAAGGGGGAGATTGTTAACATATTTGAAGGCAAGG
389 TTCCCAACATATATTTATTAAAATATTCCTAAAGGGAGAGATTGTTAACATATTTGAAGGCAAGG
*
47255663 AAAAATTCTATGGTTGTTTCTATGGCTGAAATAGTGGCTACAACTTGTGGCTCTGTTTCATTGCT
454 AAAAATTCTATGGTTGTTTCTATGGCTGAAATAGTGGCCACAACTTGTGGCTCTGTTTCATTGCT
47255728 TTACTTGTCTATTTTAGAGTTGGAAAATTTTAGAACAAAAGCATTGGACAATTTGTTTTGGAGAT
519 TTACTTGTCTATTTTAGAGTTGGAAAATTTTAGAACAAAAGCATTGGACAATTTGTTTTGGAGAT
* * *
47255793 ATTTAGACAAGTTAGAGCCCAAAACATGAAGACCAATTGAGTTATAGTTGAAGACTTGAAGATTA
584 ATTTACACAAGTTAGAGCCCAAAACATGAAGACCAATTGAGTTAAAGTTGAAGACTTGAAGATCA
* * *
47255858 TTTACACGTGGATCAAATAAAGTCACTTTCCATTATTATAAGGATTGGATTACACTAAGACTCTT
649 GTTACACGTGGATCAAATAAAGTCACTTTCCATTATTATAAGCATTGGATTACACCAAGACTCTT
*
47255923 ATGGAATTATGCCAAGACTATTCTATGCTAATTTTTAGCTTTACTTTATAGAAAAATGATTAG
714 ATGGAATTATGCCAAGACTATCCTATGCTAATTTTTAGCTTTACTTTATAGAAAAATGATTAG
* * * *
47255986 GTTAAGGACCTCAAAGCAAGCAACAATAAGCTATTTGCCATGAAGTTGGATATCAAGGTCAAATA
1 ATCAAGGACCTCAAAGCAAGCAACAATAAGCTATTGGCCATGAAGTTGGATATCATGGTCAAATA
* * *
47256051 GCTTCAGTGACCCCTTTGCAATCATTGAAAAAAAGAGAGGGAGTAGTGAAGTGAACTATGATGTT
66 GCTTCAGTGATCCCTTTCCAATCATTGAAAAAAA-AGAGGGAGTAGTGAAGTGAAGTATGATGTT
* * * * **
47256116 TTTTTGGTACAATAATAAACATAAA-TTAGGGTTTCAATTCTCATTAATCTAGTATGGTGTTTCT
130 TTTTTGGAACAATAATAAAAAAAAACTTAGGGTTTCAATTCTCATTAGTCTAGTATGGTAATTCT
* * * * *
47256180 TTTGCTTTCTGCACAAATGTTTACTCAATCTAGTAACTTTGTACTCCTTTCCTTATTTTGAATCA
195 TCTGCTTTCTGCACAAATGCTCACTCAATCTAGAAATTTTGTACTCCTTTCCTTATTTTGAATCA
* *
47256245 TATGTTATTCTCTTTTTTGTGTTA-ATACATTCATTAATGGTTAAATTAATTTGAGATGAGGTAG
260 TATATTATTCTCTTTTTTGTGTTAGA-ACATTAATTAATGGTTAAATTAATTTGAGATGAGGTAG
* *
47256309 TTGAGATTCATTGATTAAGGGGGAGATCCTTAAGGGGAGAATTTGTGACTGTGATGATTTTATTT
324 TTGAGATCCATTGATTAAGGGGGAGATCCTTAAGGGGAGAATTTGTAACTGTGATGATTTTATTT
*
47256374 TTCCC-ACATATATTTATTAAAATATTCCTAAAGGGAGAGATTGTTAACATATTTGAAGGTAAGG
389 TTCCCAACATATATTTATTAAAATATTCCTAAAGGGAGAGATTGTTAACATATTTGAAGGCAAGG
47256438 AAAAATTCTATGGTTGTTTCTATGGCTGAAAATTA-T-GCCACAACTTGTGGCTCTGTTTCATTG
454 AAAAATTCTATGGTTGTTTCTATGGCTG-AAA-TAGTGGCCACAACTTGTGGCTCTGTTTCATTG
47256501 CTTTACTTGTCTATTTTTAGAGTTGGAAAATTTTAGAACAAAAGCATTGGACAATTTGTTTTGGA
517 CTTTACTTGTCTA-TTTTAGAGTTGGAAAATTTTAGAACAAAAGCATTGGACAATTTGTTTTGGA
*
47256566 GATATTTACACAAGTTAGAGCCCAAAACATGAAGACTAATTGAGTTAAAGTTGAAGACTTGAAGA
581 GATATTTACACAAGTTAGAGCCCAAAACATGAAGACCAATTGAGTTAAAGTTGAAGACTTGAAGA
* * * *
47256631 TCAGTTACACGTGGATCAAATAAAGTCATTTTCCATTATTGTAATCATTGGATTACACCGAGACT
646 TCAGTTACACGTGGATCAAATAAAGTCACTTTCCATTATTATAAGCATTGGATTACACCAAGACT
* * *
47256696 CTTATGGAATTATGTCAAGATTATCCTATGCTGATTTTTAGCTTTACTTTATAGAAAAAT-AGTT
711 CTTATGGAATTATGCCAAGACTATCCTATGCTAATTTTTAGCTTTACTTTATAGAAAAATGA-TT
47256760 AG
775 AG
* * *
47256762 ATCAAGGACATCAAAGCAAGCAACACTAAACTATTGGCCATGAAGTTGGATATCATGGTCAAATA
1 ATCAAGGACCTCAAAGCAAGCAACAATAAGCTATTGGCCATGAAGTTGGATATCATGGTCAAATA
* *
47256827 GCTTCAGTGATCCCTTTCCAAACATTGAAAAAAAAAGAGGGAGTAGTGAAGTGAAGTGTGAT-TT
66 GCTTCAGTGATCCCTTTCCAATCATTG-AAAAAAAAGAGGGAGTAGTGAAGTGAAGTATGATGTT
*
47256891 TTTTTGGGAACAATAATAAATAAAAACTTAGGGTTTCAATTCTCATTAGTCTAGTATGGTAATTC
130 TTTTT-GGAACAATAATAAAAAAAAACTTAGGGTTTCAATTCTCATTAGTCTAGTATGGTAATTC
* * *
47256956 TTCTGCTCTCTGCACAAATGCTCACTTAATCTAGCAATTTTGTACTC
194 TTCTGCTTTCTGCACAAATGCTCACTCAATCTAGAAATTTTGTACTC
47257003 ATTTTGTGAC
Statistics
Matches: 927, Mismatches: 80, Indels: 20
0.90 0.08 0.02
Matches are distributed among these distances:
775 130 0.14
776 572 0.62
777 199 0.21
778 26 0.03
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.36
Consensus pattern (776 bp):
ATCAAGGACCTCAAAGCAAGCAACAATAAGCTATTGGCCATGAAGTTGGATATCATGGTCAAATA
GCTTCAGTGATCCCTTTCCAATCATTGAAAAAAAAGAGGGAGTAGTGAAGTGAAGTATGATGTTT
TTTTGGAACAATAATAAAAAAAAACTTAGGGTTTCAATTCTCATTAGTCTAGTATGGTAATTCTT
CTGCTTTCTGCACAAATGCTCACTCAATCTAGAAATTTTGTACTCCTTTCCTTATTTTGAATCAT
ATATTATTCTCTTTTTTGTGTTAGAACATTAATTAATGGTTAAATTAATTTGAGATGAGGTAGTT
GAGATCCATTGATTAAGGGGGAGATCCTTAAGGGGAGAATTTGTAACTGTGATGATTTTATTTTT
CCCAACATATATTTATTAAAATATTCCTAAAGGGAGAGATTGTTAACATATTTGAAGGCAAGGAA
AAATTCTATGGTTGTTTCTATGGCTGAAATAGTGGCCACAACTTGTGGCTCTGTTTCATTGCTTT
ACTTGTCTATTTTAGAGTTGGAAAATTTTAGAACAAAAGCATTGGACAATTTGTTTTGGAGATAT
TTACACAAGTTAGAGCCCAAAACATGAAGACCAATTGAGTTAAAGTTGAAGACTTGAAGATCAGT
TACACGTGGATCAAATAAAGTCACTTTCCATTATTATAAGCATTGGATTACACCAAGACTCTTAT
GGAATTATGCCAAGACTATCCTATGCTAATTTTTAGCTTTACTTTATAGAAAAATGATTAG
Found at i:47257336 original size:13 final size:13
Alignment explanation
Indices: 47257313--47257346 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
47257303 AAACATATTA
47257313 TAAACATTTTGTGT
1 TAAA-ATTTTGTGT
47257327 TAAAATTTTGTGT
1 TAAAATTTTGTGT
47257340 TAGAAAT
1 TA-AAAT
47257347 AATAAAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.35, C:0.03, G:0.15, T:0.47
Consensus pattern (13 bp):
TAAAATTTTGTGT
Found at i:47258697 original size:40 final size:40
Alignment explanation
Indices: 47258649--47258854 Score: 360
Period size: 40 Copynumber: 5.2 Consensus size: 40
47258639 GGACTAAGAT
* *
47258649 CCGAAGGCATTTGTGCTAGTAACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
47258689 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
47258729 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCCAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
47258769 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
47258809 CCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
47258848 CCGAAGG
1 CCGAAGG
47258855 TACTTGGGTT
Statistics
Matches: 160, Mismatches: 6, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
39 15 0.09
40 145 0.91
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:47262891 original size:39 final size:39
Alignment explanation
Indices: 47262760--47262967 Score: 267
Period size: 39 Copynumber: 5.3 Consensus size: 39
47262750 GCCACCACAA
* * * * *
47262760 AGCCCAGATATAATACTAGCAC-AAAGCCTACGGGACTTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGAC-TT
* * * **
47262799 AGCCCGGATATAACAGCAACACGAATGCCTACAAGACTTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGAC-TT
47262839 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
47262878 AGCCCGGATATAACACCAGCACGAATGCCTTCGGG-CTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
* *
47262916 AGCCTGGATATAACACCAGCACGAATGCCTTCGGAACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
*
47262955 AGCCCGAATATAA
1 AGCCCGGATATAA
47262968 TTCTCCATTA
Statistics
Matches: 150, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
38 36 0.24
39 68 0.45
40 46 0.31
ACGTcount: A:0.33, C:0.28, G:0.20, T:0.19
Consensus pattern (39 bp):
AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
Found at i:47262942 original size:77 final size:79
Alignment explanation
Indices: 47262760--47262967 Score: 269
Period size: 77 Copynumber: 2.7 Consensus size: 79
47262750 GCCACCACAA
* * * * * *
47262760 AGCCCAGATATAATACTAGCAC-AAAGCCTACGGGACTTTAGCCCGGATATAACAGCAACACGAA
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGAC-TTAGCCCGGATATAACACCAACACGAA
47262824 TGCCTACAAGACTTT
65 TGCCTACAAGACTTT
*
47262839 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAAT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAACACGAAT
* * *
47262904 GCCTTC-GGGC-TT
66 GCCTACAAGACTTT
* * *
47262916 AGCCTGGATATAACACCAGCACGAATGCCTTCGGAACTTAGCCCGAATATAA
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAA
47262968 TTCTCCATTA
Statistics
Matches: 115, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
77 51 0.44
78 2 0.02
79 50 0.43
80 12 0.10
ACGTcount: A:0.33, C:0.28, G:0.20, T:0.19
Consensus pattern (79 bp):
AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAACACGAAT
GCCTACAAGACTTT
Found at i:47264282 original size:39 final size:39
Alignment explanation
Indices: 47264228--47264305 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
47264218 CTCTCCCTAA
*
47264228 ATCCAAATTCGGCATATTTAACAACCCAAATGCTAACCT
1 ATCCAAATTCGGCATATTCAACAACCCAAATGCTAACCT
*
47264267 ATCCAAATTTGGCATATTCAACAACCCAAATGCTAACCT
1 ATCCAAATTCGGCATATTCAACAACCCAAATGCTAACCT
47264306 CAACGTTTAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.38, C:0.28, G:0.08, T:0.26
Consensus pattern (39 bp):
ATCCAAATTCGGCATATTCAACAACCCAAATGCTAACCT
Found at i:47270899 original size:775 final size:773
Alignment explanation
Indices: 47264995--47272305 Score: 9117
Period size: 775 Copynumber: 9.5 Consensus size: 773
47264985 GGGCTGTCAC
*
47264995 ATGA-TTTATTTTTCCCTAAATATATTTATTCAAAAATTGCTAAAGGGGGAGATTGTTAACATAT
1 ATGATTTTATTTTTCCCTATATATATTTATTCAAAAATTGCTAAAGGGGGAGATTGTTAACATAT
* * * *
47265059 TTGAAGGCAAGGAAAAATTCTATGGTTGTTTTTATGGCTGAAACAGTGGCCACAACCTATGGCTC
66 TTGAAGGCAAGGAAAAATTCTATGGTTGTTTCTATGGCTGAAAAAGTGGCCACAACTTGTGGCTC
* * * *
47265124 TATTTCATTGCTTTACTTGTCTA-TTTTAGAGTTGGAAAATTGTAGAACAAAAGCATTGGACTCT
131 TGTTTCATTGCTTTACTTGTCTATTTTTAGAGTTGGAAAATTTTAGAACAAAAGAATTGGACTAT
* ** * *
47265188 TTGTTTTGGAGACATTTGGATGAATTAGAGCCCAAAACAAGAAGACCAATTGAGTTAAAGTTGAA
196 TTGTTTTGGAGATATTTAAATGAGTTAGAGCCCAAAACATGAAGACCAATTGAGTTAAAGTTGAA
*
47265253 GACTTGAAGATC-GATTACTCGTGGATCAAATAAAGTCACTTTCCATATTTGAAGGCATTGGATT
261 GACTTGAAGATCAG-TTACTCGCGGATCAAATAAAGTCACTTTCCATATTTGAAGGCATTGGATT
* * * *
47265317 ACACCGAGACTC-T-T---ATTAAG-CAACGATTATTCTATACTAATTTTTAGCTTTACTTTATA
325 ACACCGAGACTCTTATGGAATTATGTCAA-GATTATCCTATGCTGATTTTTAGCTTTACTTTATA
* * * * *
47265376 GAAAAATGATTAGGTTAAGGACCTCAAAGCAAGCAACAATAAGCTATTTGACATGAAGTTGGATA
389 GAAAAATGATTAGATCAAGGACCTCAAAGCATGCAACAATAAGCTATTGGCCATGAA--TGGATA
* * * * *
47265441 TCAAGGTCAAATACCTTCAGTGATCCCCTTGCAATCATTGAAAAAAA-A-GGAGTAGTGAAGTGA
452 TCATGGTCAAATAGCTTCAATGATCCCTTTGCAATCATTGAAAAAAAGAGGGAGTAATGAAGTGA
* * * * * * *
47265504 ACTATGATG--TTTTTTGGTATAATAATAAACACAAACTTTGGGTTTCAATTCTCATTAATTTAG
517 AGTATGATGTTTTTTTTGG-ACAATAATAAACACAAACTTAGGGTTTAAATTCTCATCAGTCTAG
* *
47265567 TATGGTGTTTCTTTTGCT-TTCTGCACAAATGCTCACTCAATCTAGTAATTTTGTACTCCTTTCC
581 TATGGTGATTCTTCTGCTCTT-TGCACAAATGCTCACTCAATCTAGTAATTTTGTACTCCTTTCC
* *
47265631 TTGTTTTGAATCATATGTTATTGTCTTTTTTGTGTTAATACATT-AATTAATGGTTAAATTATTT
645 TTGTTTTGAATCATAT-ATATTGTCTTTTTTGTGTTAATACATTCAA-TAATGGTTAAATTACTT
* * * *
47265695 TGAGATGAGTTAGTTGAGATTCTTTGATTAAGGGGGAGATCCTTAAAGGGAGAATTTGTGACTGT
708 TGAGATGAGGTAGTTGAGATTCTTTGATTAAGGGGGAGATCCTTAAGGGGAGAATTTGTAATTGT
47265760 G
773 G
* * *
47265761 ATGA-TATATTTTTCCTTATATATATTTATTCAAAAATTGCTAAAAGGGGAGATTGTTAACATAT
1 ATGATTTTATTTTTCCCTATATATATTTATTCAAAAATTGCTAAAGGGGGAGATTGTTAACATAT
* *
47265825 TTGAAGGCAAGGAAAAATTCTATGGTTGTTTTTATGGCTGAAATAGTGGCCACAACTTGTGGCTC
66 TTGAAGGCAAGGAAAAATTCTATGGTTGTTTCTATGGCTGAAAAAGTGGCCACAACTTGTGGCTC
* * * * * * *
47265890 TATTTCATTACTTTACTTGTCTATTTTTAGAGTTTGAAACTTGTAGAA-AAAAGCATTGGACTCT
131 TGTTTCATTGCTTTACTTGTCTATTTTTAGAGTTGGAAAATTTTAGAACAAAAGAATTGGACTAT
* * * * * * * * *
47265954 TTGTTTTGGAGACATTTAGACGAATTAAAGCTCAAAACAAGAATACCAATTGAGTTAAACTTGAA
196 TTGTTTTGGAGATATTTAAATGAGTTAGAGCCCAAAACATGAAGACCAATTGAGTTAAAGTTGAA
* * *
47266019 GACTTGAAGATC-GATTACTCGCAGATCAAATAAAGTCATTTTCCATATTTGAAAGCATTGGATT
261 GACTTGAAGATCAG-TTACTCGCGGATCAAATAAAGTCACTTTCCATATTTGAAGGCATTGGATT
* * * *
47266083 ACACCGAGACTCTTATGGAATTATGCCTAGATTATTCTATGCTAATTTTTAGCTTTACTTTATAG
325 ACACCGAGACTCTTATGGAATTATGTCAAGATTATCCTATGCTGATTTTTAGCTTTACTTTATAG
* *
47266148 AAAAATGATTAGATTAAGGACCTCAAAGCATGCAACAATAAGCTATTTGCCATGAACTTGGATAT
390 AAAAATGATTAGATCAAGGACCTCAAAGCATGCAACAATAAGCTATTGGCCATGAA--TGGATAT
* * * * *
47266213 CAAGGTCAAATAGCTTTAGTGATCCCATTGC-A--A---AAAAAAAGAGGGAGTAGTGAAGTGAA
453 CATGGTCAAATAGCTTCAATGATCCCTTTGCAATCATTGAAAAAAAGAGGGAGTAATGAAGTGAA
* * * *
47266272 CTATGATG-TGTTTTTGGTACAATAATAAACACAAACTTAGGGTTTCAATTCTCATCAATCTAGT
518 GTATGATGTTTTTTTTGG-ACAATAATAAACACAAACTTAGGGTTTAAATTCTCATCAGTCTAGT
* * *
47266336 ATGGTGTTTCTTTTGCT-TTCTGCACAAATGCTCACTCAATCTAGTAATTTTGTACTCCTTTTCT
582 ATGGTGATTCTTCTGCTCTT-TGCACAAATGCTCACTCAATCTAGTAATTTTGTACTCCTTTCCT
* * * *
47266400 TGTTTTGAATCATATGTTATTGTCTTTTTTGTGTTAATACATTCATTAACGGTTAAACTACTTTG
646 TGTTTTGAATCATAT-ATATTGTCTTTTTTGTGTTAATACATTCAATAATGGTTAAATTACTTTG
* * * * * * *
47266465 AGATGAGGTACTTGAGATTCATTGAATAATGAGGAGAT-CTTAAAGGGGAGAATTTGTGACTGTG
710 AGATGAGGTAGTTGAGATTCTTTGATTAAGGGGGAGATCCTT-AAGGGGAGAATTTGTAATTGTG
* *
47266529 ATGATTTTATTTTTCCTTATATATATTTATTCAAATATTGCTAAAGGGGGAGATTGTTAACATAT
1 ATGATTTTATTTTTCCCTATATATATTTATTCAAAAATTGCTAAAGGGGGAGATTGTTAACATAT
* * *
47266594 TTGAAGGCAAGGAAAAATTCTATGGTTGTTTCTATGGTTGGAACAGTGGCCACAACTTGTGGCTC
66 TTGAAGGCAAGGAAAAATTCTATGGTTGTTTCTATGGCTGAAAAAGTGGCCACAACTTGTGGCTC
* * * * *
47266659 TATTTCATTGCTTTACTTGTCTATTTTTAGAGTTGGAAAATTGTAGAACAAAAGCATTAGACAAT
131 TGTTTCATTGCTTTACTTGTCTATTTTTAGAGTTGGAAAATTTTAGAACAAAAGAATTGGACTAT
* * * *
47266724 TTGTTTTGGAGATATTTAGAA-AAGTTAGAGCCCAAAACAAGAAGACCATTTGAGTTAAAGTTAA
196 TTGTTTTGGAGATATTTA-AATGAGTTAGAGCCCAAAACATGAAGACCAATTGAGTTAAAGTTGA
* *
47266788 AGACTTGAAGATC-GATTACTCGCAGATCAAATAAAGTCACTTTCCATATTTGTAGGCATTGGAT
260 AGACTTGAAGATCAG-TTACTCGCGGATCAAATAAAGTCACTTTCCATATTTGAAGGCATTGGAT
* * * * * *
47266852 TACACCGAGACTCTTATGGAATTAAGCCACGATTATTCTATGCTAATTTTTTGCTTTACTTTATA
324 TACACCGAGACTCTTATGGAATTATGTCAAGATTATCCTATGCTGATTTTTAGCTTTACTTTATA
* * ** * * *
47266917 GAAAAATAATTAGGTTGAGGACCTCAAAGCAAGCAACAATAAGCTATTTGACATGAAGTTGGATA
389 GAAAAATGATTAGATCAAGGACCTCAAAGCATGCAACAATAAGCTATTGGCCATGAA--TGGATA
* * * * *
47266982 TCAAGGTCAAATAGCTTCAGTGATCCCTTTGTAATTATTGAAAAAAAGAGGGAGTAGTGAAGTGA
452 TCATGGTCAAATAGCTTCAATGATCCCTTTGCAATCATTGAAAAAAAGAGGGAGTAATGAAGTGA
* * * * * *
47267047 ACTAGGATG-TTTTATTGGTACAATAATAAACACAAACTTAGGGTTTCAATTCTCATTAATCTAG
517 AGTATGATGTTTTTTTTGG-ACAATAATAAACACAAACTTAGGGTTTAAATTCTCATCAGTCTAG
* * * * *
47267111 TATGGTGTTTCTTTTGCT-TTCTGTACAAATGCTCACTCAATCTAGTAATTTTGTACACCCTTCC
581 TATGGTGATTCTTCTGCTCTT-TGCACAAATGCTCACTCAATCTAGTAATTTTGTACTCCTTTCC
* * * *
47267175 TTGTTTTGAATTATATGTTATTGTTTTTTTTTTGTGTTAATACATT-AATTAATGGTTAAATTAT
645 TTGTTTTGAATCATAT-ATATTG--TCTTTTTTGTGTTAATACATTCAA-TAATGGTTAAATTAC
* * * * *
47267239 TTTGAGATGAGTTAGTTGAGATTCTTTGATTAAAGGGGAGATCCTTAAAGGGAGAATTTTTAACT
706 TTTGAGATGAGGTAGTTGAGATTCTTTGATTAAGGGGGAGATCCTTAAGGGGAGAATTTGTAATT
47267304 GTG
771 GTG
*
47267307 ATGA-TTTATTTTTCCCTATATATATTTATTCAAAAATTGCTAAAGGGGGTGATTGTTAACATA-
1 ATGATTTTATTTTTCCCTATATATATTTATTCAAAAATTGCTAAAGGGGGAGATTGTTAACATAT
* *
47267370 -T--------GG--------T-T-G-T-TTT-TATGGTTGAAACAGTGGCCACAACTTGTGGCTC
66 TTGAAGGCAAGGAAAAATTCTATGGTTGTTTCTATGGCTGAAAAAGTGGCCACAACTTGTGGCTC
* * * * * * *
47267413 TATTTCATTGCTTTACTTGTTTATTTTTAGAGATT-GAAAATTGTAGAACAAAAGCACTAGACTC
131 TGTTTCATTGCTTTACTTGTCTATTTTTAGAG-TTGGAAAATTTTAGAACAAAAGAATTGGACTA
* * * * * * * *
47267477 TTTGTTTTGGAGACATTTAGACGAATTAAAGCTCAAAACAAGAATACCAATTGAGTTAAAGTTGA
195 TTTGTTTTGGAGATATTTAAATGAGTTAGAGCCCAAAACATGAAGACCAATTGAGTTAAAGTTGA
* ** *
47267542 ATACTTGAAGATC-GATTACTTACAGATCAAATAAAGTCACTTTCCATATTTGAAGGCATTGGAT
260 AGACTTGAAGATCAG-TTACTCGCGGATCAAATAAAGTCACTTTCCATATTTGAAGGCATTGGAT
* * * *
47267606 TACACCGAGAATCTTATGAAATTAT-TCCAAGATTATTCTATGCTAATTTTTAGCTTTACTTTAT
324 TACACCGAGACTCTTATGGAATTATGT-CAAGATTATCCTATGCTGATTTTTAGCTTTACTTTAT
* * *
47267670 AGAAAAATGATTAGATTAAGGACCTCAAAGCATGCAATAATAAGCTATTTGCCATGAAGTTGGAT
388 AGAAAAATGATTAGATCAAGGACCTCAAAGCATGCAACAATAAGCTATTGGCCATGAA--TGGAT
* * * *
47267735 ATCAAGGTCAAATAGCTTCACTGATCCCTTTGCAATCATTGGAAAAAA-AGGGAGTAGTGAAGTG
451 ATCATGGTCAAATAGCTTCAATGATCCCTTTGCAATCATTGAAAAAAAGAGGGAGTAATGAAGTG
* * * * *
47267799 AACTAGGATG-TTTCTTTGGTACAATAATAAACACAAACTTAGGGTTTCAATTCTCATCAATCTA
516 AAGTATGATGTTTTTTTTGG-ACAATAATAAACACAAACTTAGGGTTTAAATTCTCATCAGTCTA
* * * * * *
47267863 GTATGATGTTTCTTTTGCT-TTCTGTACAAATGCTCACTCAATCTCGTAATTTTGTACTCCTTTT
580 GTATGGTGATTCTTCTGCTCTT-TGCACAAATGCTCACTCAATCTAGTAATTTTGTACTCCTTTC
* * *
47267927 CTTGTTTTGAATCATATGTTATTGTCTTTTTTGTGTTAATACATTCATTAATGGTTAAATTAATT
644 CTTGTTTTGAATCATAT-ATATTGTCTTTTTTGTGTTAATACATTCAATAATGGTTAAATTACTT
* * * * * *
47267992 TGAGATGAGGTAGTTGAGATTCATTGATTGAGGGGGAGATCTTTAAGGGAAGAATTTGTGACTGT
708 TGAGATGAGGTAGTTGAGATTCTTTGATTAAGGGGGAGATCCTTAAGGGGAGAATTTGTAATTGT
47268057 G
773 G
** *
47268058 ATGATTTTATTTTTTCATATATATATATTTATTCAAATATTGCTAAAGGGGGAGATTGTTAACAT
1 ATGATTTTA-TTTTTC-CCTATATATATTTATTCAAAAATTGCTAAAGGGGGAGATTGTTAACAT
* * * *
47268123 ATTTGAAGGCCAGAAAAAATTCTATGGTTGTTTCTATGGCTGAAATAGTGGCCACAACTCGTGGC
64 ATTTGAAGGCAAGGAAAAATTCTATGGTTGTTTCTATGGCTGAAAAAGTGGCCACAACTTGTGGC
* * * * *
47268188 TCTGTTTCATTTCTTTACTTGTGTATTTTTAGAGTTGGAAAATTGTAGAATAAAAGCATTGGACT
129 TCTGTTTCATTGCTTTACTTGTCTATTTTTAGAGTTGGAAAATTTTAGAACAAAAGAATTGGACT
* * *
47268253 ATTT-TTTCGGAGATATTTACACGAGTTAGAGCCCAAAACATGAAGACCAATTGAGTTAAA-TCT
194 ATTTGTTTTGGAGATATTTAAATGAGTTAGAGCCCAAAACATGAAGACCAATTGAGTTAAAGT-T
* * * * *
47268316 GAAGAGTTGAAGATCGGTTACTCGCTGATCAAATAAAGTCACTTTCCATTTTTGTAA-ACATTGG
258 GAAGACTTGAAGATCAGTTACTCGCGGATCAAATAAAGTCACTTTCCATATTTG-AAGGCATTGG
* * * * *
47268380 CTTTCACCGAGATTCTTATGAAATTATGTTAAGATTATCCTATGCTGATTTTTAGCTTTACTTTA
322 ATTACACCGAGACTCTTATGGAATTATGTCAAGATTATCCTATGCTGATTTTTAGCTTTACTTTA
* * * * *
47268445 TA-AAAAATAATTAGATCAAGGTCTTCAAAGCATGGAACAATAAGCTGTTGGCCATGAAGTTGGA
387 TAGAAAAATGATTAGATCAAGGACCTCAAAGCATGCAACAATAAGCTATTGGCCATGAA--TGGA
* * * * *
47268509 TATCATGGTCAAATAGCCTCAGTAATCCCTTTCCAATCATTGAAAGAAAAGAGGGAGTATTGAAG
450 TATCATGGTCAAATAGCTTCAATGATCCCTTTGCAATCATTGAAA-AAAAGAGGGAGTAATGAAG
*
47268574 TGAACTATGA---------T-G-C--------ACA-AAA-TTAGGGTTTAAATTCTCATCAGTCT
514 TGAAGTATGATGTTTTTTTTGGACAATAATAAACACAAACTTAGGGTTTAAATTCTCATCAGTCT
* * *
47268618 TGTATGGTGATTCTTCTGCTCTTTGCACAAATGCTCACTCAATCTAGTAATTTTGTACACTTTTC
579 AGTATGGTGATTCTTCTGCTCTTTGCACAAATGCTCACTCAATCTAGTAATTTTGTACTCCTTTC
* * *
47268683 CTTGTTTTGAATCATATATCGTTGTCTTTTTTGTGTTCATACACTCAATAATGGTTAAATTACTT
644 CTTGTTTTGAATCATATAT-ATTGTCTTTTTTGTGTTAATACATTCAATAATGGTTAAATTACTT
* * *
47268748 TGAGATGAGGTAGTTGAGATTCATTGATTAAGGGGGAAATCCTTAAGGGGAGAATTTTTAATTGT
708 TGAGATGAGGTAGTTGAGATTCTTTGATTAAGGGGGAGATCCTTAAGGGGAGAATTTGTAATTGT
47268813 G
773 G
* * * ** * *
47268814 ATGATTTTATTTTTACCTATATATATTTATTCAAATATTTCTAAATAGAGAGATTGTTAACGTAT
1 ATGATTTTATTTTTCCCTATATATATTTATTCAAAAATTGCTAAAGGGGGAGATTGTTAACATAT
* * * *
47268879 TTGAAGGTAAGGAAAAATTCTATGGTTGTTTCTATAGCTAAAAAAGTGGCCACAACTTGTGGCAC
66 TTGAAGGCAAGGAAAAATTCTATGGTTGTTTCTATGGCTGAAAAAGTGGCCACAACTTGTGGCTC
* *
47268944 TATTTCATTGCTTTACTTGTCTATTTTTAGAGTTGGAAAATTTTAGAACGAAAGCAATTGG-CTA
131 TGTTTCATTGCTTTACTTGTCTATTTTTAGAGTTGGAAAATTTTAGAACAAAAG-AATTGGACTA
* * * *
47269008 TTTGTTTTGGAGATATTTAGACT-AGTTAGAGCCCAAAACAAGAAGATCGATTGAGTTAAAGTTG
195 TTTGTTTTGGAGATATTTA-AATGAGTTAGAGCCCAAAACATGAAGACCAATTGAGTTAAAGTTG
* * * * *
47269072 ATGATTTTAAGATCAGTTACTCGC-GAGTCAAATAAAGTCACTTTCCATATTTGAAGGTAGTGGA
259 AAGACTTGAAGATCAGTTACTCGCGGA-TCAAATAAAGTCACTTTCCATATTTGAAGGCATTGGA
* * * *
47269136 TTACACCGAGACTTTTATGGATTTATTTGAAGATTATCCTATGCTGATTTTTAGCTTTACTTTAT
323 TTACACCGAGACTCTTATGGAATTATGTCAAGATTATCCTATGCTGATTTTTAGCTTTACTTTAT
47269201 AGAAAAATGATTAGATCAAGGACCTCAAAGCATGCAACAATAAGCTATTGGCCATGAAGTTGGAT
388 AGAAAAATGATTAGATCAAGGACCTCAAAGCATGCAACAATAAGCTATTGGCCATGAA--TGGAT
* * * * * * *
47269266 ATCATGGTCAAATAGCTTTAGTGATCCCTTTCCGATCATTGAAAAGAAAAAAGGAGTAGA-GGAG
451 ATCATGGTCAAATAGCTTCAATGATCCCTTTGCAATCATTGAAAA-AAAGAGGGAGTA-ATGAAG
* * *
47269330 TGAAGTATGACGTTTTTTTTTGGACAATAATAAACACAAACTTAGGGTCTGAATTCTCATCAGTC
514 TGAAGTATGATG-TTTTTTTTGGACAATAATAAACACAAACTTAGGGTTTAAATTCTCATCAGTC
* * *
47269395 TAGTATGGTGATTCTTCTTCTCTCTGCACAAATGCTCACTCAATCTAGTAATTTTGTATTCCTTT
578 TAGTATGGTGATTCTTCTGCTCTTTGCACAAATGCTCACTCAATCTAGTAATTTTGTACTCCTTT
* *
47269460 CCTTGTTTTGAATCATATATGTTTGTCTTTTTTGTTTTAATACATTCAATAATGGTTAAATTACT
643 CCTTGTTTTGAATCATATAT-ATTGTCTTTTTTGTGTTAATACATTCAATAATGGTTAAATTACT
* * * * * * *
47269525 TTGAGGTGAGGTAGTTGAGATTCTTTGGTTAAGTGGGAGATCTTTAAGGGAAGGATTTGTAATTT
707 TTGAGATGAGGTAGTTGAGATTCTTTGATTAAGGGGGAGATCCTTAAGGGGAGAATTTGTAATTG
47269590 TG
772 TG
* * * *
47269592 ATGATTTTATTTTTACCTATATATATTTATTCAAATATTGCTAAAAGGGGAGATTATTAACATAT
1 ATGATTTTATTTTTCCCTATATATATTTATTCAAAAATTGCTAAAGGGGGAGATTGTTAACATAT
**
47269657 TTGAAGTTAAGGAAAAATTCTATGGTTGTTT-TGATGGCTGAAAAAGTGGCCACAACTTGTGGCT
66 TTGAAGGCAAGGAAAAATTCTATGGTTGTTTCT-ATGGCTGAAAAAGTGGCCACAACTTGTGGCT
* * *
47269721 CTGTTTCATTGCTTTACTTGTCTCTTTTTAGAGTTGGAAAATTTTATAACAAAAGCATTGGACTA
130 CTGTTTCATTGCTTTACTTGTCTATTTTTAGAGTTGGAAAATTTTAGAACAAAAGAATTGGACTA
* *
47269786 TTTGTTTTGGAG--ATTTAGATGAGTTAGAGCCCAAAACATGAAGACCAATTGAGTTGAAGTTGA
195 TTTGTTTTGGAGATATTTAAATGAGTTAGAGCCCAAAACATGAAGACCAATTGAGTTAAAGTTGA
* * * * *
47269849 AGACTTGAAGATTAGTTACTCGTGGATCAAATAAAGTCACTTTCTATTTTTGTAA-GCATTGGGT
260 AGACTTGAAGATCAGTTACTCGCGGATCAAATAAAGTCACTTTCCATATTTG-AAGGCATTGGAT
* *
47269913 TACACCGAGACTCATATGG-ATATATGTGAAGATTATCCTATGCTGATTTTTAGCTTTACTTTAT
324 TACACCGAGACTCTTATGGAAT-TATGTCAAGATTATCCTATGCTGATTTTTAGCTTTACTTTAT
* * * * **
47269977 AGAAAAATGATTAGATCAAGGACCTTAAAGCATGTATCAATATGCTATTATCCATGAAGTTGGAT
388 AGAAAAATGATTAGATCAAGGACCTCAAAGCATGCAACAATAAGCTATTGGCCATGAA--TGGAT
* * *
47270042 ATCATGGTCAAATAGCTTCAGTGATCCCTTT-CTAATCATTGAAAAAAAAGAGGGAGTAGTAAAG
451 ATCATGGTCAAATAGCTTCAATGATCCCTTTGC-AATCATTG-AAAAAAAGAGGGAGTAATGAAG
* * *
47270106 TGAAGTATGATGTTTTTTTCGGACAATAATAAACACAAACTTAGGGTTTGAATTATCATCAGTCT
514 TGAAGTATGATGTTTTTTTTGGACAATAATAAACACAAACTTAGGGTTTAAATTCTCATCAGTCT
* * *
47270171 AGTATGGTGATTCTTCTGCTCTTTACACAATTGCTCACTTAATCTAGTAATTTTGTACTCCTTTC
579 AGTATGGTGATTCTTCTGCTCTTTGCACAAATGCTCACTCAATCTAGTAATTTTGTACTCCTTTC
* * **
47270236 CTTGTTTTGATTGATATACTATTGTCTTTTTTGTGTTAATACATTCAATAATTTTTAAATTACTT
644 CTTGTTTTGAATCATATA-TATTGTCTTTTTTGTGTTAATACATTCAATAATGGTTAAATTACTT
* * * * * *
47270301 TGAGATAAGTTATTTCAGATTCTTTGATTAAGGGGGAGATCCTTAAGAGGAGAATTTGTAATTTT
708 TGAGATGAGGTAGTTGAGATTCTTTGATTAAGGGGGAGATCCTTAAGGGGAGAATTTGTAATTGT
47270366 G
773 G
* *
47270367 ATGATTTTATTTTTCCCTATATATATTTATTCAAAAATTTCTAAA-GGGGAAATTGTTAACATAT
1 ATGATTTTATTTTTCCCTATATATATTTATTCAAAAATTGCTAAAGGGGGAGATTGTTAACATAT
47270431 TTGAAGGCAA-GAAGAAATTCTATGGTTGTTTCTATGGCTGAAAAAGTGGCCACAACTTGTGGCT
66 TTGAAGGCAAGGAA-AAATTCTATGGTTGTTTCTATGGCTGAAAAAGTGGCCACAACTTGTGGCT
* * * **
47270495 CTGTTTCATTGCTTTACTTGTCTATTTTTAGAGCTGGAAAATTGTAGAAAAAAAGTGTTGGACTA
130 CTGTTTCATTGCTTTACTTGTCTATTTTTAGAGTTGGAAAATTTTAGAACAAAAGAATTGGACTA
* *
47270560 TTTTTTTTTGGAGATATTTAAATGAGTTAGAGCCCAAAACATGAAGACCAATTAAGTTAAAGTTG
195 -TTTGTTTTGGAGATATTTAAATGAGTTAGAGCCCAAAACATGAAGACCAATTGAGTTAAAGTTG
** * * *
47270625 AAGACTTGACTATCGGTTACTCACGGATCAAATAAAGTCACTTTCCATATTTGAAGGCATTAGAT
259 AAGACTTGAAGATCAGTTACTCGCGGATCAAATAAAGTCACTTTCCATATTTGAAGGCATTGGAT
* * * *
47270690 TACACCGAGAATCTTATGGAATTATGTCAAGATTATCCTATGCTAATTTTTAGCTTTGCTTTATT
324 TACACCGAGACTCTTATGGAATTATGTCAAGATTATCCTATGCTGATTTTTAGCTTTACTTTATA
* *
47270755 GAAAAATGATTAGATCAAGGACCTCAAAGCATGCAACAATAAGCTATTTGCCATTAA-GGATATC
389 GAAAAATGATTAGATCAAGGACCTCAAAGCATGCAACAATAAGCTATTGGCCATGAATGGATATC
* * * *
47270819 ATGGTCAACTAGCTTCAATGATCCCTTTGCAATCATTGAGAAAGAAGAGGAAGTAATGAATTGAA
454 ATGGTCAAATAGCTTCAATGATCCCTTTGCAATCATTGA-AAAAAAGAGGGAGTAATGAAGTGAA
* * *
47270884 GTATGATGTTTTTTTTGGGACAATAATAAACACAAACTTAGGGTTTCAATTCTCATAAGTCTATT
518 GTATGATGTTTTTTTT-GGACAATAATAAACACAAACTTAGGGTTTAAATTCTCATCAGTCTAGT
* * * * * *
47270949 ATGGTGATTCTTTTTCTTTTTGTACAAATACTCACTCAATTTAGTAATTTTGTACTCCTTTCCTT
582 ATGGTGATTCTTCTGCTCTTTGCACAAATGCTCACTCAATCTAGTAATTTTGTACTCCTTTCCTT
* * *
47271014 GTTTTGAATCATATATTATTGTCTTTATTGTGTTAATACATTCATTAATGGTTAAATTAGTTTGA
647 GTTTTGAATCATATA-TATTGTCTTTTTTGTGTTAATACATTCAATAATGGTTAAATTACTTTGA
* * *
47271079 GATGAGGTAGTTGAGATTCTTTGATTAAGGGGGATATCCTTAAGGGGAGAATTTGCAACTGTG
711 GATGAGGTAGTTGAGATTCTTTGATTAAGGGGGAGATCCTTAAGGGGAGAATTTGTAATTGTG
* * * *
47271142 ATTATTTTATTTTTCCCTCTATATTTTTATTCAAAAATTACTAAAGGGGGAGATTGTTAACATAT
1 ATGATTTTATTTTTCCCTATATATATTTATTCAAAAATTGCTAAAGGGGGAGATTGTTAACATAT
* * ** *
47271207 TTGGAGGCAAGGAAAAATTCTAT-G--G------T---TGAAATAGTGGCCACAACTTAAGGCTT
66 TTGAAGGCAAGGAAAAATTCTATGGTTGTTTCTATGGCTGAAAAAGTGGCCACAACTTGTGGCTC
* *
47271260 TGTTTCATTGCTTTACTAGTCTATTTTTAGAGTTGGAAAATTTTAGAACGAAAGCAATTGG-CTA
131 TGTTTCATTGCTTTACTTGTCTATTTTTAGAGTTGGAAAATTTTAGAACAAAAG-AATTGGACTA
* * * *
47271324 TTTGTTTTGGAGATATTTAGACT-AGTTAGAGCCCAAAACAAGAAGATCGATTGAGTTAAAGTTG
195 TTTGTTTTGGAGATATTTA-AATGAGTTAGAGCCCAAAACATGAAGACCAATTGAGTTAAAGTTG
* * * * *
47271388 ATGATTTTAAGATCAGTTACTCGC-GAGTCAAATAAAGTCACTTTCCATATTTGAAGGTAGTGGA
259 AAGACTTGAAGATCAGTTACTCGCGGA-TCAAATAAAGTCACTTTCCATATTTGAAGGCATTGGA
* *
47271452 TTACATCGAGACTCTTATGGAATTATGTAAAGATTATCCTATGCTGATTTTTAGCTTTACTTTAT
323 TTACACCGAGACTCTTATGGAATTATGTCAAGATTATCCTATGCTGATTTTTAGCTTTACTTTAT
* ** *
47271517 AGAAAAGTGATTAGATCAAGGATATCAAAGCATGCAACAATAAGTTATTGGCCATGAAGTTGGAT
388 AGAAAAATGATTAGATCAAGGACCTCAAAGCATGCAACAATAAGCTATTGGCCATGAA--TGGAT
* *
47271582 ATCATGGTCAAATAGCTTCAATGATCCCTTTGCAATCATTGAACAAAAAAGAGGGAGTAGTGCAG
451 ATCATGGTCAAATAGCTTCAATGATCCCTTTGCAATCATTG-A-AAAAAAGAGGGAGTAATGAAG
47271647 TGAAGTATGATGTTCTTTTTTGGACAATAATAAACACAAACTTAGGGTTTAAATTCTCATCAGTC
514 TGAAGTATGATGTT-TTTTTTGGACAATAATAAACACAAACTTAGGGTTTAAATTCTCATCAGTC
* * *
47271712 TAGTGTGGTGATTCTTCTGCT-TTCTGCACAAATGCTCACTCAATCTAGTAATTTTTTACTCATT
578 TAGTATGGTGATTCTTCTGCTCTT-TGCACAAATGCTCACTCAATCTAGTAATTTTGTACTCCTT
* * * * *
47271776 TCCTTATTTTGAATAATATATTGTTGTCTTTTTTGTGTTAATACATTTATTAATGGTTAAATTAC
642 TCCTTGTTTTGAATCATATA-TATTGTCTTTTTTGTGTTAATACATTCAATAATGGTTAAATTAC
*
47271841 TTTGAGATGAGGTAGTTGAAATTCTTTGATTAAGGGGGAGATCCTTAAGGGGAGAATTTGTAATT
706 TTTGAGATGAGGTAGTTGAGATTCTTTGATTAAGGGGGAGATCCTTAAGGGGAGAATTTGTAATT
47271906 GTG
771 GTG
* * * *
47271909 ATGATTTTATAGTTTCTCTATAGATATTTTTTCAAAAATTGCTAAAGGGGGAGATTGTTAACATA
1 ATGATTTTAT-TTTTCCCTATATATATTTATTCAAAAATTGCTAAAGGGGGAGATTGTTAACATA
* *
47271974 TTTGAAGGCAAGGAAAAATTCTATGGTTGTTTCTATGGCTGAAATAGTGGCCACAACTTGAGGCT
65 TTTGAAGGCAAGGAAAAATTCTATGGTTGTTTCTATGGCTGAAAAAGTGGCCACAACTTGTGGCT
* * * * *
47272039 CAGTTTCA-----TTACTAGTCTATTTTTAGAGTTGAAAAATTTTAGAACAAAAGCATTGAACTA
130 CTGTTTCATTGCTTTACTTGTCTATTTTTAGAGTTGGAAAATTTTAGAACAAAAGAATTGGACTA
* * * * *
47272099 TTTGTTTTAGATATATTTAGACGAGTTAGAGCCCAAAACATGAAGACCAATTGAGCTAAAGTTGA
195 TTTGTTTTGGAGATATTTAAATGAGTTAGAGCCCAAAACATGAAGACCAATTGAGTTAAAGTTGA
* * * * *
47272164 AGACTTGAAGATCGGTTATTCGTGGATGAAATAAAGTCCCTTTCCATATTTGAAGGCATTGGATT
260 AGACTTGAAGATCAGTTACTCGCGGATCAAATAAAGTCACTTTCCATATTTGAAGGCATTGGATT
* * *
47272229 ACACC-AGGACTCTTATGGAATTATGTCAATATTATGCTATACTGATTTTTAGCTTTACTTTATA
325 ACACCGA-GACTCTTATGGAATTATGTCAAGATTATCCTATGCTGATTTTTAGCTTTACTTTATA
*
47272293 G-AAAATTATTAGA
389 GAAAAATGATTAGA
47272306 CTATGACTCT
Statistics
Matches: 5807, Mismatches: 595, Indels: 278
0.87 0.09 0.04
Matches are distributed among these distances:
751 97 0.02
752 5 0.00
753 166 0.03
754 566 0.10
755 175 0.03
756 324 0.06
757 6 0.00
758 4 0.00
759 1 0.00
762 2 0.00
763 217 0.04
764 78 0.01
765 11 0.00
766 340 0.06
767 311 0.05
768 309 0.05
769 166 0.03
770 276 0.05
771 132 0.02
772 3 0.00
773 7 0.00
774 223 0.04
775 836 0.14
776 648 0.11
777 396 0.07
778 474 0.08
779 3 0.00
780 31 0.01
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (773 bp):
ATGATTTTATTTTTCCCTATATATATTTATTCAAAAATTGCTAAAGGGGGAGATTGTTAACATAT
TTGAAGGCAAGGAAAAATTCTATGGTTGTTTCTATGGCTGAAAAAGTGGCCACAACTTGTGGCTC
TGTTTCATTGCTTTACTTGTCTATTTTTAGAGTTGGAAAATTTTAGAACAAAAGAATTGGACTAT
TTGTTTTGGAGATATTTAAATGAGTTAGAGCCCAAAACATGAAGACCAATTGAGTTAAAGTTGAA
GACTTGAAGATCAGTTACTCGCGGATCAAATAAAGTCACTTTCCATATTTGAAGGCATTGGATTA
CACCGAGACTCTTATGGAATTATGTCAAGATTATCCTATGCTGATTTTTAGCTTTACTTTATAGA
AAAATGATTAGATCAAGGACCTCAAAGCATGCAACAATAAGCTATTGGCCATGAATGGATATCAT
GGTCAAATAGCTTCAATGATCCCTTTGCAATCATTGAAAAAAAGAGGGAGTAATGAAGTGAAGTA
TGATGTTTTTTTTGGACAATAATAAACACAAACTTAGGGTTTAAATTCTCATCAGTCTAGTATGG
TGATTCTTCTGCTCTTTGCACAAATGCTCACTCAATCTAGTAATTTTGTACTCCTTTCCTTGTTT
TGAATCATATATATTGTCTTTTTTGTGTTAATACATTCAATAATGGTTAAATTACTTTGAGATGA
GGTAGTTGAGATTCTTTGATTAAGGGGGAGATCCTTAAGGGGAGAATTTGTAATTGTG
Found at i:47274068 original size:16 final size:16
Alignment explanation
Indices: 47274044--47274076 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
47274034 TAATGAGTAC
47274044 AATAATATATAAAAAT
1 AATAATATATAAAAAT
*
47274060 AATACTATATAAAAAT
1 AATAATATATAAAAAT
47274076 A
1 A
47274077 CATATGCACG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (16 bp):
AATAATATATAAAAAT
Found at i:47274224 original size:21 final size:22
Alignment explanation
Indices: 47274186--47274239 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 22
47274176 CCATTTTTAC
*
47274186 ATAAAGATATA-CCTATATATA
1 ATAAAGATATATACTATATATA
* *
47274207 TTAAAGATATATAC-ATATGTA
1 ATAAAGATATATACTATATATA
47274228 ATAAA-ATATATA
1 ATAAAGATATATA
47274240 AATAACATGA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
20 7 0.25
21 20 0.71
22 1 0.04
ACGTcount: A:0.54, C:0.06, G:0.06, T:0.35
Consensus pattern (22 bp):
ATAAAGATATATACTATATATA
Found at i:47274310 original size:18 final size:19
Alignment explanation
Indices: 47274284--47274323 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
47274274 TATGATAAAA
*
47274284 ATAATAATATACATAATAT
1 ATAATAATACACATAATAT
*
47274303 ATAA-AATACATATAATAT
1 ATAATAATACACATAATAT
47274321 ATA
1 ATA
47274324 CATATACTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (19 bp):
ATAATAATACACATAATAT
Found at i:47274311 original size:16 final size:15
Alignment explanation
Indices: 47274283--47274353 Score: 51
Period size: 16 Copynumber: 4.7 Consensus size: 15
47274273 GTATGATAAA
*
47274283 AATAATAATATACAT
1 AATAATAAAATACAT
47274298 AATATATAAAATACAT
1 AATA-ATAAAATACAT
*
47274314 -ATAAT-ATATACAT
1 AATAATAAAATACAT
*
47274327 -ATACTAGAAATGACAAT
1 AATAATA-AAAT-AC-AT
47274344 AAT-ATAAAAT
1 AATAATAAAAT
47274354 GAACTTGCTA
Statistics
Matches: 45, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
13 11 0.24
14 2 0.04
15 10 0.22
16 16 0.36
17 4 0.09
18 2 0.04
ACGTcount: A:0.59, C:0.07, G:0.03, T:0.31
Consensus pattern (15 bp):
AATAATAAAATACAT
Found at i:47274324 original size:13 final size:14
Alignment explanation
Indices: 47274284--47274329 Score: 58
Period size: 13 Copynumber: 3.2 Consensus size: 14
47274274 TATGATAAAA
47274284 ATAATAATATACAT
1 ATAATAATATACAT
*
47274298 AATATATAAAATACAT
1 -ATA-ATAATATACAT
47274314 ATAAT-ATATACAT
1 ATAATAATATACAT
47274327 ATA
1 ATA
47274330 CTAGAAATGA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 10 0.36
14 2 0.07
15 6 0.21
16 10 0.36
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.35
Consensus pattern (14 bp):
ATAATAATATACAT
Found at i:47274346 original size:28 final size:28
Alignment explanation
Indices: 47274283--47274349 Score: 75
Period size: 28 Copynumber: 2.3 Consensus size: 28
47274273 GTATGATAAA
47274283 AATAATAATATACATAATATATAAAATAC
1 AATAAT-ATATACATAATATATAAAATAC
*
47274312 ATATAATATATACAT-ATACTA-GAAATGAC
1 A-ATAATATATACATAATA-TATAAAAT-AC
47274341 AATAATATA
1 AATAATATA
47274350 AAATGAACTT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
28 15 0.44
29 14 0.41
30 5 0.15
ACGTcount: A:0.58, C:0.07, G:0.03, T:0.31
Consensus pattern (28 bp):
AATAATATATACATAATATATAAAATAC
Found at i:47274460 original size:18 final size:17
Alignment explanation
Indices: 47274423--47274465 Score: 59
Period size: 18 Copynumber: 2.5 Consensus size: 17
47274413 AGAAATACTT
*
47274423 AATATATAATAATTTAA
1 AATATATAATAATATAA
*
47274440 AATATATACATGATATAA
1 AATATATA-ATAATATAA
47274458 AATATATA
1 AATATATA
47274466 TAGAACGTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 8 0.35
18 15 0.65
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.37
Consensus pattern (17 bp):
AATATATAATAATATAA
Found at i:47274579 original size:9 final size:9
Alignment explanation
Indices: 47274557--47274622 Score: 50
Period size: 9 Copynumber: 7.7 Consensus size: 9
47274547 ACATACAATG
*
47274557 TATATAAAA
1 TATATATAA
*
47274566 AATATATAA
1 TATATATAA
47274575 TATATATACA
1 TATATATA-A
47274585 -ATATAT-A
1 TATATATAA
* *
47274592 CATATCTAA
1 TATATATAA
47274601 TATA-ATAA
1 TATATATAA
*
47274609 TAAATAT-A
1 TATATATAA
47274617 TATATA
1 TATATA
47274623 AAAAATATTG
Statistics
Matches: 45, Mismatches: 8, Indels: 9
0.73 0.13 0.15
Matches are distributed among these distances:
7 1 0.02
8 17 0.38
9 26 0.58
10 1 0.02
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.38
Consensus pattern (9 bp):
TATATATAA
Found at i:47274839 original size:3 final size:3
Alignment explanation
Indices: 47274831--47274873 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
47274821 ATGACAACAC
47274831 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
47274874 ATTAAAGTAG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:47275517 original size:14 final size:13
Alignment explanation
Indices: 47275494--47275534 Score: 64
Period size: 13 Copynumber: 3.1 Consensus size: 13
47275484 TTTGAGTAGG
*
47275494 AAAAGGAAAGAAA
1 AAAAAGAAAGAAA
47275507 AAAAAGAAAAGAAA
1 AAAAAG-AAAGAAA
47275521 AAAAAGAAAGAAA
1 AAAAAGAAAGAAA
47275534 A
1 A
47275535 TCGATTGGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
13 13 0.50
14 13 0.50
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (13 bp):
AAAAAGAAAGAAA
Found at i:47276415 original size:44 final size:44
Alignment explanation
Indices: 47276367--47276466 Score: 146
Period size: 44 Copynumber: 2.3 Consensus size: 44
47276357 AAATTTGTGG
* * *
47276367 CTTTGATCTGCTTCACTATAACTTCAGAAAGACAAGACTTGCAA
1 CTTTGACCTGCTTCACTACAACTTCAGAAAGACAAAACTTGCAA
* **
47276411 CTTTGACCTGCTTCACTGCAACTTCAGGGAGACAAAACTTGCAA
1 CTTTGACCTGCTTCACTACAACTTCAGAAAGACAAAACTTGCAA
47276455 CTTTGACCTGCT
1 CTTTGACCTGCT
47276467 CCGCTGCAAC
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 50 1.00
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (44 bp):
CTTTGACCTGCTTCACTACAACTTCAGAAAGACAAAACTTGCAA
Found at i:47276474 original size:44 final size:44
Alignment explanation
Indices: 47276367--47276478 Score: 143
Period size: 44 Copynumber: 2.5 Consensus size: 44
47276357 AAATTTGTGG
* * ** *
47276367 CTTTGATCTGCTTCACTATAACTTCAGAAAGACAAGACTTGCAA
1 CTTTGACCTGCTCCACTGCAACTTCAGAAAGACAAAACTTGCAA
* **
47276411 CTTTGACCTGCTTCACTGCAACTTCAGGGAGACAAAACTTGCAA
1 CTTTGACCTGCTCCACTGCAACTTCAGAAAGACAAAACTTGCAA
*
47276455 CTTTGACCTGCTCCGCTGCAACTT
1 CTTTGACCTGCTCCACTGCAACTT
47276479 TAGAGAGGCC
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 60 1.00
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.29
Consensus pattern (44 bp):
CTTTGACCTGCTCCACTGCAACTTCAGAAAGACAAAACTTGCAA
Found at i:47276733 original size:80 final size:77
Alignment explanation
Indices: 47276639--47276897 Score: 216
Period size: 77 Copynumber: 3.4 Consensus size: 77
47276629 GCCAAAACTT
* **
47276639 AACTCACCTCTCGCAATATAAGTT-AGTTTTGAAACTT-AAAAATAGATTTTGAAAATACCTCGA
1 AACTCACCTCTCGCAATATAAGTTGACTTTT-----TTGAAAAATAGAAATTGAAAATACCTCGA
47276702 CATGTGACCCGCGGTTC
61 CATGTGACCCGCGGTTC
* * * *
47276719 AACTCACTTTTCGCAATATGAGTTGACTTTTTTGAAAAATATAAATTGAAAATACCTCGACATGT
1 AACTCACCTCTCGCAATATAAGTTGACTTTTTTGAAAAATAGAAATTGAAAATACCTCGACATGT
* *
47276784 GACCC-AGGCTC
66 GACCCGCGGTTC
* * * * *
47276795 AAATCACCTCTGGCAATATGCA-TTGA--TTTTTGAAAAACATAAATTGAAAATACCTC-AGC--
1 AACTCACCTCTCGCAATAT-AAGTTGACTTTTTTGAAAAATAGAAATTGAAAATACCTCGA-CAT
* *
47276854 GTG-CCCTGAGGCTC
64 GTGACCC-GCGGTTC
*
47276868 AACTCACCTCTCGCAATATGAGTTGA-TTTT
1 AACTCACCTCTCGCAATATAAGTTGACTTTT
47276898 GACAAACAGA
Statistics
Matches: 153, Mismatches: 18, Indels: 22
0.79 0.09 0.11
Matches are distributed among these distances:
71 3 0.02
72 4 0.03
73 28 0.18
74 33 0.22
76 25 0.16
77 34 0.22
80 21 0.14
81 5 0.03
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (77 bp):
AACTCACCTCTCGCAATATAAGTTGACTTTTTTGAAAAATAGAAATTGAAAATACCTCGACATGT
GACCCGCGGTTC
Found at i:47276772 original size:77 final size:76
Alignment explanation
Indices: 47276687--47276897 Score: 274
Period size: 74 Copynumber: 2.8 Consensus size: 76
47276677 AAAATAGATT
* * * *
47276687 TTGAAAATACCTCGACATGTGACCCGCGGTTCAACTCACTTTTCGCAATATGAGTTGACTTTTTT
1 TTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTT
*
47276752 GAAAAATATAAA
65 GAAAAACATAAA
* *
47276764 TTGAAAATACCTCGACATGTGACCC-AGGCTCAAATCACCTCTGGCAATATGCA-TTGA-TTTTT
1 TTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATG-AGTTGATTTTTT
47276826 GAAAAACATAAA
65 GAAAAACATAAA
47276838 TTGAAAATACCTC-AGC--GTG-CCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 TTGAAAATACCTCGA-CATGTGACCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
47276898 GACAAACAGA
Statistics
Matches: 119, Mismatches: 9, Indels: 15
0.83 0.06 0.10
Matches are distributed among these distances:
71 3 0.03
72 4 0.03
73 29 0.24
74 33 0.28
76 24 0.20
77 26 0.22
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (76 bp):
TTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
AAAAACATAAA
Found at i:47276846 original size:74 final size:75
Alignment explanation
Indices: 47276687--47276917 Score: 278
Period size: 73 Copynumber: 3.1 Consensus size: 75
47276677 AAAATAGATT
* * * *
47276687 TTGAAAATACCTCGACATGTGACCCGCGGTTCAACTCACTTTTCGCAATATGAGTTGACTTTTTT
1 TTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTT
*
47276752 GAAAAATATAAA
64 GAAAAACATAAA
* *
47276764 TTGAAAATACCTCGACATGTGACCC-AGGCTCAAATCACCTCTGGCAATATGCA-TTGATTTTTG
1 TTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATG-AGTTGATTTTTG
47276827 AAAAACATAAA
65 AAAAACATAAA
47276838 TTGAAAATACCTC-AGC--GTG-CCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT
1 TTGAAAATACCTCGA-CATGTGACCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* *
47276898 GACAAACAGAAA
64 GAAAAACATAAA
47276910 TTTGAAAA
1 -TTGAAAA
47276918 ACATAAACTG
Statistics
Matches: 137, Mismatches: 11, Indels: 16
0.84 0.07 0.10
Matches are distributed among these distances:
71 3 0.02
72 18 0.13
73 36 0.26
74 30 0.22
76 24 0.18
77 26 0.19
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (75 bp):
TTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
AAAACATAAA
Found at i:47276930 original size:87 final size:88
Alignment explanation
Indices: 47276823--47276986 Score: 278
Period size: 89 Copynumber: 1.9 Consensus size: 88
47276813 TGCATTGATT
*
47276823 TTTGAAAAACATAAATTGAAAATACCTCAGC-GTG-CCCTGAGGCTCAACTCACCTCTCGCAATA
1 TTTGAAAAACATAAACTGAAAATACCTCAGCAGTGACCC-GAGGCTCAACTCACCTCTCGCAATA
47276886 TGAGTTGATTTTGACAAACAGAAA
65 TGAGTTGATTTTGACAAACAGAAA
*
47276910 TTTGAAAAACATAAACTGAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATA
1 TTTGAAAAACATAAACTGAAAATACCTCAGCA-GTGACCCGAGGCTCAACTCACCTCTCGCAATA
47276975 TGAGTTGATTTT
65 TGAGTTGATTTT
47276987 TTTGAAAAGC
Statistics
Matches: 72, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
87 30 0.42
89 40 0.56
90 2 0.03
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.26
Consensus pattern (88 bp):
TTTGAAAAACATAAACTGAAAATACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTGACAAACAGAAA
Found at i:47277022 original size:164 final size:159
Alignment explanation
Indices: 47276749--47277229 Score: 658
Period size: 163 Copynumber: 3.0 Consensus size: 159
47276739 AGTTGACTTT
* * *
47276749 TTTGAAAAATATAAATTGAAAATACCTC-GACATGTGACCCAGGCTCAAATCACCTCTGGCAATA
1 TTTGAAAAACATAAATTGAAAATACCTCAG-CATGTGACCCAGGCTCAACTCACCTCTCGCAATA
* *
47276813 TGCATTGATTTTTGAAAAACATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTC
65 TG-ATTGATTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTC
*
47276878 TCGCAATATGAGTTGATTTTGACAAACAGAAA
129 TCGCAATATGAGTTGATTTTGAAAAACA-AAA
* *
47276910 TTTGAAAAACATAAACTGAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATA
1 TTTGAAAAACATAAATTGAAAATACCTCAGCATGTGA-CCCAGGCTCAACTCACCTCTCGCAATA
* *
47276975 TGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAATTCCTCAGCGTGCCCCGAGGCTCAACTCACC
65 TGA-TTGA--TTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACC
*
47277040 TCTCGCAATATGAGTTGATTTTTGAAAAACATAA
127 TCTCGCAATATGAGTTGA-TTTTGAAAAACAAAA
* * * * *
47277074 TTTGAAAAAACAGAAATTGAAAATACCTCAGTACGTGAACCCAGGTTCAACTCACCTCTCGCCAT
1 TTTG-AAAAACATAAATTGAAAATACCTCAGCATGTG-ACCCAGGCTCAACTCACCTCTCGCAAT
* * * * *
47277139 ATGAATTGATTTTTGAAAAATAGCATTTGAAAATACCTCAGTGTGCCCCGAGGCCCAACTCACCT
64 ATG-ATTGATTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCT
47277204 CTCGCAATATGAGTTGATTTTTGAAA
128 CTCGCAATATGAGTTGA-TTTTGAAA
47277230 TATAGAAATT
Statistics
Matches: 286, Mismatches: 25, Indels: 16
0.87 0.08 0.05
Matches are distributed among these distances:
161 34 0.12
162 31 0.11
163 75 0.26
164 75 0.26
165 69 0.24
166 2 0.01
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (159 bp):
TTTGAAAAACATAAATTGAAAATACCTCAGCATGTGACCCAGGCTCAACTCACCTCTCGCAATAT
GATTGATTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTC
GCAATATGAGTTGATTTTGAAAAACAAAA
Found at i:47277044 original size:75 final size:76
Alignment explanation
Indices: 47276910--47277070 Score: 238
Period size: 75 Copynumber: 2.1 Consensus size: 76
47276900 CAAACAGAAA
* *
47276910 TTTGAAAAACATAAACTGAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATA
1 TTTGAAAAACAGAAACTGAAAATACCTCAGCA-GTGACCCGAGGCTCAACTCACCTCTCGCAATA
47276975 TGAGTTGATTTT
65 TGAGTTGATTTT
* * * *
47276987 TTTGAAAAGCAGAAATTGAAAATTCCTCAGC-GTGCCCCGAGGCTCAACTCACCTCTCGCAATAT
1 TTTGAAAAACAGAAACTGAAAATACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTCGCAATAT
47277051 GAGTTGA--TT
66 GAGTTGATTTT
47277060 TTTGAAAAACA
1 TTTGAAAAACA
47277071 TAATTTGAAA
Statistics
Matches: 77, Mismatches: 7, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
73 12 0.16
75 38 0.49
77 27 0.35
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (76 bp):
TTTGAAAAACAGAAACTGAAAATACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTT
Found at i:47277093 original size:88 final size:88
Alignment explanation
Indices: 47276987--47277158 Score: 249
Period size: 90 Copynumber: 1.9 Consensus size: 88
47276977 AGTTGATTTT
* * *
47276987 TTTGAAAAGCAGAAATTGAAAATTCCTCAG-CGTG-CCCCGAGGCTCAACTCACCTCTCGCAATA
1 TTTGAAAAACAGAAATTGAAAATACCTCAGACGTGAACCC-AGGCTCAACTCACCTCTCGCAATA
*
47277050 TGAGTTGATTTTTGAAAAACATAA
65 TGAATTGATTTTTGAAAAACATAA
* *
47277074 TTTGAAAAAACAGAAATTGAAAATACCTCAGTACGTGAACCCAGGTTCAACTCACCTCTCGCCAT
1 TTTG-AAAAACAGAAATTGAAAATACCTCAG-ACGTGAACCCAGGCTCAACTCACCTCTCGCAAT
47277139 ATGAATTGATTTTTGAAAAA
64 ATGAATTGATTTTTGAAAAA
47277159 TAGCATTTGA
Statistics
Matches: 75, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
87 4 0.05
88 24 0.32
90 44 0.59
91 3 0.04
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.27
Consensus pattern (88 bp):
TTTGAAAAACAGAAATTGAAAATACCTCAGACGTGAACCCAGGCTCAACTCACCTCTCGCAATAT
GAATTGATTTTTGAAAAACATAA
Found at i:47277215 original size:73 final size:73
Alignment explanation
Indices: 47277074--47277317 Score: 310
Period size: 73 Copynumber: 3.3 Consensus size: 73
47277064 AAAAACATAA
* * *
47277074 TTTGAAAAAACAGAAATTGAAAATACCTCAGTACGTGAACCC-AGGTTCAACTCACCTCTCGCCA
1 TTTG-AAAAATAGAAATTGAAAATACCTCAGT--GTG-ACCCGAGGCTCAACTCACCTCTCGCAA
*
47277138 TATGAATTGATT
62 TATGAGTTGATT
* * * *
47277150 TTTGAAAAATAGCATTTGAAAATACCTCAGTGTGCCCCGAGGCCCAACTCACCTCTCGCAATATG
1 TTTGAAAAATAGAAATTGAAAATACCTCAGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATG
47277215 AGTTGATT
66 AGTTGATT
* * * * * *
47277223 TTTGAAATATAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACCCACCTCTCGCAATATG
1 TTTGAAAAATAGAAATTGAAAATACCTCAGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATG
47277288 AGTTGATT
66 AGTTGATT
*
47277296 TTTGAAAAGTAGAAATTGAAAA
1 TTTGAAAAATAGAAATTGAAAA
47277318 ACAGAAATTG
Statistics
Matches: 147, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
72 3 0.02
73 116 0.79
75 24 0.16
76 4 0.03
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (73 bp):
TTTGAAAAATAGAAATTGAAAATACCTCAGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATT
Found at i:47277278 original size:236 final size:235
Alignment explanation
Indices: 47276926--47277385 Score: 660
Period size: 236 Copynumber: 1.9 Consensus size: 235
47276916 AAACATAAAC
* *
47276926 TGAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
1 TGAAAATACCTCAG-ATGTGACCCGAGGCCCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG
*
47276991 AAAAGCAGAAATTGAAAATTCCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
64 AAAAGCAGAAATTGAAAATTCCTCAGCGTGCCCCGAGGCTCAACCCACCTCTCGCAATATGAGTT
* * *
47277056 GATTTTTGAAAAACATAATTTGAAAAAACAGAAATTGAAAATACCTCAGTACGTGAACC-CAGGT
129 GATTTTTGAAAAACAGAAATTG-AAAAACAGAAATTGAAAATACCTCAG--CGTG-ACCTCAGGC
*
47277120 TCAACTCACCTCTCGCCATATGAATTGATTTTTGAAAAATAGCATT
190 TCAACTCACCTCTCGCAATATGAATTGATTTTTGAAAAATAGCATT
*
47277166 TGAAAATACCTCAG-TGTGCCCCGAGGCCCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAA
1 TGAAAATACCTCAGATGTGACCCGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAA
* * *
47277229 ATA-TAGAAATTG-AAATTACCTCAGCGTGTCCTGAGGCTCAACCCACCTCTCGCAATATGAGTT
66 A-AGCAGAAATTGAAAATT-CCTCAGCGTGCCCCGAGGCTCAACCCACCTCTCGCAATATGAGTT
** * * *
47277292 GATTTTTGAAAAGTAGAAATTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAA
129 GATTTTTGAAAAACAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGACCTCAGGCTCAA
*
47277357 CTCACCTCTCGCAATATGAGTTGATTTTT
194 CTCACCTCTCGCAATATGAATTGATTTTT
47277386 TTGAAAATAG
Statistics
Matches: 200, Mismatches: 17, Indels: 13
0.87 0.07 0.06
Matches are distributed among these distances:
232 2 0.01
233 38 0.19
235 30 0.15
236 77 0.38
237 1 0.00
238 38 0.19
240 14 0.07
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (235 bp):
TGAAAATACCTCAGATGTGACCCGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAA
AAGCAGAAATTGAAAATTCCTCAGCGTGCCCCGAGGCTCAACCCACCTCTCGCAATATGAGTTGA
TTTTTGAAAAACAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGACCTCAGGCTCAACT
CACCTCTCGCAATATGAATTGATTTTTGAAAAATAGCATT
Found at i:47277328 original size:87 final size:87
Alignment explanation
Indices: 47277224--47277406 Score: 300
Period size: 87 Copynumber: 2.1 Consensus size: 87
47277214 GAGTTGATTT
* *
47277224 TTGAAATATAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACCCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACCCACCTCTCGCAATATGA
47277289 GTTGA-TTTTTGAAAAGTAGAAA
66 GTTGATTTTTTGAAAA-TAGAAA
*
47277311 TTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACCCACCTCTCGCAATATGA
47277376 GTTGATTTTTTTGAAAATAGAAA
66 GTTGA-TTTTTTGAAAATAGAAA
47277399 -T-AAAAACA
1 TTGAAAAACA
47277407 TCAAAATACC
Statistics
Matches: 91, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
86 7 0.08
87 68 0.75
88 6 0.07
89 10 0.11
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (87 bp):
TTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACCCACCTCTCGCAATATGA
GTTGATTTTTTGAAAATAGAAA
Found at i:47299137 original size:12 final size:12
Alignment explanation
Indices: 47299112--47299146 Score: 54
Period size: 13 Copynumber: 2.9 Consensus size: 12
47299102 TTTGAGTAGG
47299112 AAAG-AAGAAAA
1 AAAGAAAGAAAA
47299123 AAAGAAAAGAAAA
1 AAAG-AAAGAAAA
47299136 AAAGAAAGAAA
1 AAAGAAAGAAA
47299147 TCGATTGGCA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 4 0.18
12 7 0.32
13 11 0.50
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (12 bp):
AAAGAAAGAAAA
Found at i:47300005 original size:44 final size:40
Alignment explanation
Indices: 47299957--47300051 Score: 111
Period size: 44 Copynumber: 2.3 Consensus size: 40
47299947 AAATTTGTGG
*
47299957 CTTTGATCTGCTTCACTATAACTTCAGAAAGACAAGACTTGCAA
1 CTTTGA-CTGCTTCACTACAACTTCAG-AA-ACAA-ACTTGCAA
* *
47300001 CTTTGACCTGCTTCACTGCAACTTCAGGAACAAACTTGCAA
1 CTTTGA-CTGCTTCACTACAACTTCAGAAACAAACTTGCAA
47300042 C-TTGACTGCT
1 CTTTGACTGCT
47300052 CCGCTGCACT
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
39 5 0.11
40 4 0.09
41 9 0.19
42 4 0.09
43 1 0.02
44 24 0.51
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.29
Consensus pattern (40 bp):
CTTTGACTGCTTCACTACAACTTCAGAAACAAACTTGCAA
Found at i:47300366 original size:67 final size:67
Alignment explanation
Indices: 47300244--47300390 Score: 174
Period size: 64 Copynumber: 2.2 Consensus size: 67
47300234 AAAATAGATT
* * * * *
47300244 TTGAAATACCTCGACATGTGACCCGGTTCAACTCACTTTCGCATATAGTGATTTTTGAAAATATA
1 TTGAAATACCTCGACATGTGACCCAGCTCAAATCACTCTCGCATATAGTGATTTTTGAAAACATA
47300309 AA
66 AA
* *
47300311 -TGAAATA-CTCGA-ATGTGACCCAGCTCAAATCACTCTGGCAATATGCATTGATTTTTGAAAAC
1 TTGAAATACCTCGACATGTGACCCAGCTCAAATCACTCTCGC-ATAT--AGTGATTTTTGAAAAC
47300373 ATAAA
63 ATAAA
47300378 TTGAAAATACCTC
1 TTG-AAATACCTC
47300391 AGCGTGCCCT
Statistics
Matches: 67, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
64 22 0.33
65 9 0.13
66 7 0.10
67 19 0.28
68 2 0.03
69 5 0.07
70 3 0.04
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.31
Consensus pattern (67 bp):
TTGAAATACCTCGACATGTGACCCAGCTCAAATCACTCTCGCATATAGTGATTTTTGAAAACATA
AA
Found at i:47300438 original size:72 final size:69
Alignment explanation
Indices: 47300247--47300457 Score: 186
Period size: 72 Copynumber: 3.0 Consensus size: 69
47300237 ATAGATTTTG
* * * * *
47300247 AAATACCTCGACATGTGACCCGGTTCAACTCACTTTCGC-ATAT-AG-TGATTTTTGAAAATATA
1 AAATA-CTCGA-ACGTGACCCAGCTCAACTCACTCTCGCAATATGAGTTGATTTTTGAAAACATA
47300309 AA-TG-
64 AATTGA
* * *
47300313 AAATACTCGAATGTGACCCAGCTCAAATCACTCTGGCAATATGCA-TTGATTTTTGAAAACATAA
1 AAATACTCGAACGTGACCCAGCTCAACTCACTCTCGCAATATG-AGTTGATTTTTGAAAACATAA
47300377 ATTGA
65 ATTGA
* *
47300382 AAATACCTC-AGCGTG-CCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAC
1 AAATA-CTCGAACGTGACCC--A-GCTCAACTCA-CTCTCGCAATATGAGTTGATTTTTGAAAAC
*
47300445 AGAAATTTGA
61 ATAAA-TTGA
47300455 AAA
1 AAA
47300458 CATAAACTGA
Statistics
Matches: 120, Mismatches: 12, Indels: 19
0.79 0.08 0.13
Matches are distributed among these distances:
64 22 0.18
65 9 0.08
66 5 0.04
67 19 0.16
68 5 0.04
69 9 0.08
70 4 0.03
71 10 0.08
72 30 0.25
73 7 0.06
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.29
Consensus pattern (69 bp):
AAATACTCGAACGTGACCCAGCTCAACTCACTCTCGCAATATGAGTTGATTTTTGAAAACATAAA
TTGA
Found at i:47300509 original size:87 final size:88
Alignment explanation
Indices: 47300364--47300545 Score: 275
Period size: 87 Copynumber: 2.1 Consensus size: 88
47300354 TGCATTGATT
*
47300364 TTTGAAAACATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTTGAAAACATAAACTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
47300429 GTTGA-TTTTTGACAA-CAGAAA
66 GTTGATTTTTTGAAAAGCAGAAA
*
47300450 TTTGAAAACATAAACTG-AAATACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATA
1 TTTGAAAACATAAACTGAAAATACCTCAGC--GTG-CCCTGAGGCTCAACTCACCTCTCGCAATA
47300513 TGAGTTGATTTTTTGAAAAGCAGAAA
63 TGAGTTGATTTTTTGAAAAGCAGAAA
47300539 -TTGAAAA
1 TTTGAAAA
47300546 TTCCTCAGCG
Statistics
Matches: 88, Mismatches: 3, Indels: 8
0.89 0.03 0.08
Matches are distributed among these distances:
85 12 0.14
86 16 0.18
87 36 0.41
88 18 0.20
89 6 0.07
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.26
Consensus pattern (88 bp):
TTTGAAAACATAAACTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTTGAAAAGCAGAAA
Found at i:47300574 original size:160 final size:153
Alignment explanation
Indices: 47300297--47300762 Score: 580
Period size: 160 Copynumber: 3.0 Consensus size: 153
47300287 TATAGTGATT
* * *
47300297 TTTGAAAATATAAATGAAATA-CTC-GAATGTGACCCA-GCTCAAATCACTCTGGCAATATGCAT
1 TTTGAAAACATAAATGAAATACCTCAGAATGTGACCCAGGCTCAACTCACTCTCGCAATATG-AT
*
47300359 TGATTTTTGAAAACATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAA
65 TGATTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGCCC-GAGGCTCAACTCACCTCTCGCAA
*
47300424 TATGAGTTGATTTTTGACAACAGAAA
129 TATGAGTTGATTTTTGAAAACA-AAA
* *
47300450 TTTGAAAACATAAACTGAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATG
1 TTTGAAAACATAAA-TGAAATACCTCAGAATGTGA-CCCAGGCTCAACTCA-CTCTCGCAATATG
*
47300515 AGTTGATTTTTTGAAAAGCAGAAATTGAAAATTCCTCAGCGTGCCCGAGGCTCAACTCACCTCTC
63 A-TTGA-TTTTTGAAAA-CAGAAATTGAAAATACCTCAGCGTGCCCGAGGCTCAACTCACCTCTC
*
47300580 GCAATATGAGTTGATTTTTGAAAAACATAA
125 GCAATATGAGTTGATTTTTG-AAAACAAAA
* * * * *
47300610 TTTGAAAAAACAGAAATTGAAAATACCTCAGTACGTGAACCCAGGTTCAACTCACTCTCGCCATA
1 TTTG--AAAACATAAA-TG-AAATACCTCAGAATGTG-ACCCAGGCTCAACTCACTCTCGCAATA
* * * * *
47300675 TGAATTGA-TTTTGAAAATAGCATTTGAAAATACCTCAGTGTGCCCCGAGGCCCAACTCACCTCT
61 TG-ATTGATTTTTGAAAACAGAAATTGAAAATACCTCAGCGTG-CCCGAGGCTCAACTCACCTCT
47300739 CGCAATATGAGTTGATTTTTGAAA
124 CGCAATATGAGTTGATTTTTGAAA
47300763 TATAGAAATT
Statistics
Matches: 275, Mismatches: 22, Indels: 26
0.85 0.07 0.08
Matches are distributed among these distances:
153 13 0.05
154 7 0.03
155 3 0.01
156 7 0.03
157 3 0.01
158 10 0.04
159 39 0.14
160 105 0.38
161 31 0.11
162 27 0.10
163 29 0.11
164 1 0.00
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (153 bp):
TTTGAAAACATAAATGAAATACCTCAGAATGTGACCCAGGCTCAACTCACTCTCGCAATATGATT
GATTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGCCCGAGGCTCAACTCACCTCTCGCAATA
TGAGTTGATTTTTGAAAACAAAA
Found at i:47300685 original size:89 final size:85
Alignment explanation
Indices: 47300524--47300691 Score: 223
Period size: 87 Copynumber: 1.9 Consensus size: 85
47300514 GAGTTGATTT
* *
47300524 TTTGAAAAGCAGAAATTGAAAATTCCTCAGCGTGCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCGAGGCTCAACTCACCTCTCGCAATATGA
*
47300589 GTTGATTTTTGAAAAACATAA
66 ATTGA-TTTTGAAAAACATAA
* *
47300610 TTTGAAAAAACAGAAATTGAAAATACCTCAGTACGTGAACCC-AGGTTCAACTCA-CTCTCGCCA
1 TTTG-AAAAACAGAAATTGAAAATACCTCAG--CGTG--CCCGAGGCTCAACTCACCTCTCGCAA
47300673 TATGAATTGATTTTGAAAA
61 TATGAATTGATTTTGAAAA
47300692 TAGCATTTGA
Statistics
Matches: 72, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
86 4 0.06
87 24 0.33
88 9 0.12
89 21 0.29
90 11 0.15
91 3 0.04
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (85 bp):
TTTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCGAGGCTCAACTCACCTCTCGCAATATGA
ATTGATTTTGAAAAACATAA
Found at i:47300759 original size:72 final size:71
Alignment explanation
Indices: 47300616--47300849 Score: 276
Period size: 72 Copynumber: 3.2 Consensus size: 71
47300606 ATAATTTGAA
* * * *
47300616 AAAACAGAAATTGAAAATACCTCAGTACGTGAACCC-AGGTTCAACTCA-CTCTCGCCATATGAA
1 AAAATAGAAATTGAAAATACCTCAGT--GTG--CCCGAGGCTCAACTCACCTCTCGCAATATGAG
47300679 TTGA-TTTTG
62 TTGATTTTTG
* * *
47300688 AAAATAGCATTTGAAAATACCTCAGTGTGCCCCGAGGCCCAACTCACCTCTCGCAATATGAGTTG
1 AAAATAGAAATTGAAAATACCTCAGTGTG-CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
47300753 ATTTTTG
65 ATTTTTG
* * * * *
47300760 AAATATAGAAATTGAAATTACCTCAGCGTGTCTGAGGCTCAACCCACCTCTCGCAATATGAGTTG
1 AAA-ATAGAAATTGAAAATACCTCAGTGTGCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
47300825 ATTTTTG
65 ATTTTTG
47300832 AAAAGTAGAAATTGAAAA
1 AAAA-TAGAAATTGAAAA
47300850 ACAGAAATTG
Statistics
Matches: 140, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
69 3 0.02
70 13 0.09
71 18 0.13
72 84 0.60
73 22 0.16
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (71 bp):
AAAATAGAAATTGAAAATACCTCAGTGTGCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTG
Found at i:47300799 original size:232 final size:233
Alignment explanation
Indices: 47300467--47300926 Score: 646
Period size: 232 Copynumber: 2.0 Consensus size: 233
47300457 ACATAAACTG
* *
47300467 AAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAA
1 AAATACCTCAG-ATGTGACCCGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAA
*
47300532 GCAGAAATTGAAAATTCCTCAGCGTGCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
65 GCAGAAATTGAAAATTCCTCAGCGTGCCCGAGGCTCAACCCACCTCTCGCAATATGAGTTGATTT
* * *
47300597 TTGAAAAACATAATTTGAAAAAACAGAAATTGAAAATACCTCAGTACGTGAACC-CAGGTTCAAC
130 TTGAAAAACAGAAATTG-AAAAACAGAAATTGAAAATACCTCAG--CGTG-ACCTCAGGCTCAAC
*
47300661 TCA-CTCTCGCCATATGAATTGA-TTTTGAAAATAGCATTTGA
191 TCACCTCTCGCAATATGAATTGATTTTTGAAAATAGCATTTGA
*
47300702 AAATACCTCAG-TGTGCCCCGAGGCCCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAATA
1 AAATACCTCAGATGTGACCCGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAA-A
* * *
47300765 -TAGAAATTG-AAATTACCTCAGCGTGTCTGAGGCTCAACCCACCTCTCGCAATATGAGTTGATT
65 GCAGAAATTGAAAATT-CCTCAGCGTGCCCGAGGCTCAACCCACCTCTCGCAATATGAGTTGATT
** * * *
47300828 TTTGAAAAGTAGAAATTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCA
129 TTTGAAAAACAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGACCTCAGGCTCAACTCA
*
47300893 CCTCTCGCAATATGAGTTGATTTTTTGAAAATAG
194 CCTCTCGCAATATGAATTGA-TTTTTGAAAATAG
47300927 AAATAAAAAC
Statistics
Matches: 202, Mismatches: 17, Indels: 15
0.86 0.07 0.06
Matches are distributed among these distances:
228 2 0.01
229 15 0.07
230 17 0.08
231 30 0.15
232 88 0.44
233 39 0.19
235 11 0.05
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (233 bp):
AAATACCTCAGATGTGACCCGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAG
CAGAAATTGAAAATTCCTCAGCGTGCCCGAGGCTCAACCCACCTCTCGCAATATGAGTTGATTTT
TGAAAAACAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGACCTCAGGCTCAACTCACC
TCTCGCAATATGAATTGATTTTTGAAAATAGCATTTGA
Found at i:47300860 original size:86 final size:87
Alignment explanation
Indices: 47300757--47300937 Score: 298
Period size: 87 Copynumber: 2.1 Consensus size: 87
47300747 GAGTTGATTT
* *
47300757 TTGAAATATAGAAATTGAAATTACCTCAGCGTGT-CTGAGGCTCAACCCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACCCACCTCTCGCAATATGA
47300821 GTTGA-TTTTTGAAAAGTAGAAA
66 GTTGATTTTTTGAAAA-TAGAAA
*
47300843 TTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACCCACCTCTCGCAATATGA
47300908 GTTGATTTTTTGAAAATAGAAA
66 GTTGATTTTTTGAAAATAGAAA
47300930 -T-AAAAACA
1 TTGAAAAACA
47300938 TCAAAATACC
Statistics
Matches: 90, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
85 7 0.08
86 33 0.37
87 40 0.44
88 10 0.11
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (87 bp):
TTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACCCACCTCTCGCAATATGA
GTTGATTTTTTGAAAATAGAAA
Found at i:47313431 original size:21 final size:20
Alignment explanation
Indices: 47313402--47313446 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
47313392 AAGATATACC
* *
47313402 TATATATATATATTAAAGATA
1 TATACATATATAATAAA-ATA
*
47313423 TATACATATGTAATAAAATA
1 TATACATATATAATAAAATA
47313443 TATA
1 TATA
47313447 AATGACATGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 7 0.33
21 14 0.67
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.40
Consensus pattern (20 bp):
TATACATATATAATAAAATA
Found at i:47313507 original size:15 final size:15
Alignment explanation
Indices: 47313489--47313532 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
47313479 GTATGATAAA
47313489 AATAATAATATACAT
1 AATAATAATATACAT
47313504 AATATATAA-ATACAT
1 AATA-ATAATATACAT
47313519 -ATAAT-ATATACAT
1 AATAATAATATACAT
47313532 A
1 A
47313533 TACTAGAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
12 1 0.04
13 8 0.31
14 3 0.12
15 10 0.38
16 4 0.15
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (15 bp):
AATAATAATATACAT
Found at i:47313531 original size:28 final size:28
Alignment explanation
Indices: 47313489--47313554 Score: 82
Period size: 28 Copynumber: 2.3 Consensus size: 28
47313479 GTATGATAAA
*
47313489 AATAATAATATACATAATA-TATAAAT-AC
1 AATAAT-ATATACAT-ATACTAGAAATGAC
47313517 ATATAATATATACATATACTAGAAATGAC
1 A-ATAATATATACATATACTAGAAATGAC
47313546 AATAATATA
1 AATAATATA
47313555 AAATGAACTT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
27 3 0.09
28 23 0.68
29 8 0.24
ACGTcount: A:0.58, C:0.08, G:0.03, T:0.32
Consensus pattern (28 bp):
AATAATATATACATATACTAGAAATGAC
Found at i:47313650 original size:17 final size:19
Alignment explanation
Indices: 47313628--47313673 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
47313618 AGAGATACTT
*
47313628 AATATATA-ATAAT-TTAA
1 AATATATATATAATATAAA
*
47313645 AATATATATATGATATAAA
1 AATATATATATAATATAAA
47313664 AATATATATA
1 AATATATATA
47313674 GAACGTAGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 8 0.32
18 4 0.16
19 13 0.52
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (19 bp):
AATATATATATAATATAAA
Found at i:47313890 original size:36 final size:36
Alignment explanation
Indices: 47313850--47313949 Score: 93
Period size: 34 Copynumber: 2.8 Consensus size: 36
47313840 AATGCTTCAC
*
47313850 AAATATATATACTAAAAATATACATAATAA-TATATA
1 AAATATATATA-TAAAAATATACATAATAACTATAAA
*
47313886 AAATATAGTAT-TAAAAGTAT-C-T-ATAACGTATAAA
1 AAATATA-TATATAAAAATATACATAATAAC-TATAAA
*
47313920 AAATATATTTATATAAAATAATACATAATA
1 AAATATATATATA-AAAAT-ATACATAATA
47313950 TAGACACATT
Statistics
Matches: 51, Mismatches: 4, Indels: 15
0.73 0.06 0.21
Matches are distributed among these distances:
32 4 0.08
33 3 0.06
34 15 0.29
35 12 0.24
36 9 0.18
37 4 0.08
38 1 0.02
39 3 0.06
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.34
Consensus pattern (36 bp):
AAATATATATATAAAAATATACATAATAACTATAAA
Found at i:47314043 original size:3 final size:3
Alignment explanation
Indices: 47314035--47314065 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
47314025 ATGACAACAC
*
47314035 ATA ATA ATA ATA ATA ACA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
47314066 ATTAAAGTAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:47314721 original size:16 final size:15
Alignment explanation
Indices: 47314693--47314735 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
47314683 TTCGAGTAGG
*
47314693 AAAAGGAAAGAAAAA
1 AAAAAGAAAGAAAAA
*
47314708 AAAAAGAAAG-GAAA
1 AAAAAGAAAGAAAAA
*
47314722 AAAAAGAAGGAAAA
1 AAAAAGAAAGAAAA
47314736 TCGATTCGCA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
14 12 0.52
15 11 0.48
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (15 bp):
AAAAAGAAAGAAAAA
Found at i:47314722 original size:14 final size:13
Alignment explanation
Indices: 47314705--47314735 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
47314695 AAGGAAAGAA
47314705 AAAAAAAAGAAAGG
1 AAAAAAAAG-AAGG
47314719 AAAAAAAAGAAGG
1 AAAAAAAAGAAGG
47314732 AAAA
1 AAAA
47314736 TCGATTCGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.47
14 9 0.53
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (13 bp):
AAAAAAAAGAAGG
Found at i:47315298 original size:16 final size:18
Alignment explanation
Indices: 47315272--47315305 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
47315262 GTTATTGTTT
47315272 GGGTTTGTGGG-TTAGTG
1 GGGTTTGTGGGTTTAGTG
47315289 GGGTTT-TGGGTTTAGTG
1 GGGTTTGTGGGTTTAGTG
47315306 TAATGTAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.06, C:0.00, G:0.50, T:0.44
Consensus pattern (18 bp):
GGGTTTGTGGGTTTAGTG
Found at i:47316080 original size:23 final size:23
Alignment explanation
Indices: 47316054--47316100 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
47316044 ATTTGTAATT
47316054 ATAAATTATAATTTATGATCATA
1 ATAAATTATAATTTATGATCATA
*
47316077 ATAAATTATAATTTCTGATCATA
1 ATAAATTATAATTTATGATCATA
47316100 A
1 A
47316101 AATCTACAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.47, C:0.06, G:0.04, T:0.43
Consensus pattern (23 bp):
ATAAATTATAATTTATGATCATA
Found at i:47324039 original size:16 final size:16
Alignment explanation
Indices: 47324013--47324051 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
47324003 GGCAACCCAA
*
47324013 ATTTT-TTATTTTTTT
1 ATTTTATTATTTATTT
47324028 ATTTTATTATTTATTT
1 ATTTTATTATTTATTT
*
47324044 ATATTATT
1 ATTTTATT
47324052 TACTATTTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 5 0.24
16 16 0.76
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (16 bp):
ATTTTATTATTTATTT
Found at i:47324053 original size:20 final size:20
Alignment explanation
Indices: 47324017--47324060 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
47324007 ACCCAAATTT
* *
47324017 TTTATTTTTTTATTTTATTA
1 TTTATTTTATTATTTTACTA
47324037 TTTATTTATATTA-TTTACTA
1 TTTATTT-TATTATTTTACTA
47324057 TTTA
1 TTTA
47324061 CTATTTATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (20 bp):
TTTATTTTATTATTTTACTA
Found at i:47329413 original size:15 final size:15
Alignment explanation
Indices: 47329393--47329441 Score: 64
Period size: 15 Copynumber: 3.3 Consensus size: 15
47329383 ATCATATCTC
47329393 ATATTTTCCATTTCA
1 ATATTTTCCATTTCA
*
47329408 ATATTTTCTCATCTC-
1 ATATTTTC-CATTTCA
*
47329423 ATCTTTTCCATTTCA
1 ATATTTTCCATTTCA
47329438 ATAT
1 ATAT
47329442 CAATCACATA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
14 5 0.18
15 18 0.64
16 5 0.18
ACGTcount: A:0.24, C:0.22, G:0.00, T:0.53
Consensus pattern (15 bp):
ATATTTTCCATTTCA
Done.