Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 152 of 316
Found at i:48177020 original size:13 final size:13
Alignment explanation
Indices: 48177002--48177026 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
48176992 TAATGGTATA
48177002 TTGAATCCATGAC
1 TTGAATCCATGAC
48177015 TTGAATCCATGA
1 TTGAATCCATGA
48177027 AATTTAGTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:48177590 original size:27 final size:26
Alignment explanation
Indices: 48177559--48177736 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 26
48177549 TAAATTGTAC
48177559 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* *
48177586 TGCACTAAGTGTGCGAATTGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
48177612 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
48177640 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
48177668 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
48177695 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
48177722 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
48177737 GGCTCAATAT
Statistics
Matches: 131, Mismatches: 15, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
26 1 0.01
27 104 0.79
28 26 0.20
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:48177675 original size:82 final size:81
Alignment explanation
Indices: 48177560--48177715 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
48177550 AAATTGTACA
* *
48177560 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAATTGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAATTGAATACGTA-GCACTAAGTG
48177624 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* * *
48177641 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAATTGAATACGTAGCACTAAGTG
*
48177706 TGCGAGTTGA
65 TGCGAATTGA
48177716 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAATTGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:48177727 original size:82 final size:81
Alignment explanation
Indices: 48177556--48177736 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
48177546 GATTAAATTG
* *
48177556 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAATTGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAATTGAATACGATGCACTAA
48177621 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * * *
48177637 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAATTGAATACGAT-GCACT
* **
48177701 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
48177719 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
48177737 GGCTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAATTGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:48177747 original size:27 final size:27
Alignment explanation
Indices: 48177641--48177747 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
48177631 TGACCATGCG
* * * *
48177641 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
48177669 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
48177696 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
48177723 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
48177748 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:48179808 original size:40 final size:41
Alignment explanation
Indices: 48179749--48179947 Score: 212
Period size: 40 Copynumber: 5.0 Consensus size: 41
48179739 GCTTGATGTG
*
48179749 GTCA-CTAGCATAAATGCCTTCGGGACTTAGCCCGGATATA
1 GTCAGCTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
** *
48179789 GTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCTGGATATA
1 GTCAGCTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
* *
48179829 ATC-GCTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATA
1 GTCAGCTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
* * * * * *
48179869 G-CAACTCGCACGAATGCCTT--TGATCTTAGTCCGGTTATA
1 GTCAGCTAGCACAAATGCCTTCGGGA-CTTAGCCCGGATATA
* * *
48179908 GTCACCTAGCACAAAAGCCTTCAGGACTTAGCCCGGATAT
1 GTCAGCTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
48179948 CATTCGAATA
Statistics
Matches: 131, Mismatches: 22, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
38 1 0.01
39 15 0.11
40 101 0.77
41 12 0.09
42 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (41 bp):
GTCAGCTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
Found at i:48183204 original size:46 final size:46
Alignment explanation
Indices: 48183154--48183326 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
48183144 TGGTTGAGCA
48183154 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
48183200 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
48183245 CATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
48183293 CCCGAGCTCGTTAAGTTGATTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
48183327 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 58 0.56
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:48183310 original size:93 final size:93
Alignment explanation
Indices: 48183151--48183321 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
48183141 GGATGGTTGA
* * * *
48183151 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTAAGT
48183216 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
48183244 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTAAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTAAGT
*
48183309 TGATTCCGAGTTC
66 TGAGTCCGAGTTC
48183322 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTAAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:48188496 original size:30 final size:31
Alignment explanation
Indices: 48188453--48188510 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
48188443 TTAATACGAA
* *
48188453 TTTTGGCAAAATTACATTTTTGCCCCTAAAC
1 TTTTGGCAAAATTACACTTTTCCCCCTAAAC
*
48188484 TTTT-GCATAATTACACTTTTCCCCCTA
1 TTTTGGCAAAATTACACTTTTCCCCCTA
48188511 GGCTCGGGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 20 0.83
31 4 0.17
ACGTcount: A:0.26, C:0.26, G:0.07, T:0.41
Consensus pattern (31 bp):
TTTTGGCAAAATTACACTTTTCCCCCTAAAC
Found at i:48204806 original size:8 final size:8
Alignment explanation
Indices: 48204793--48204820 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
48204783 AAAAATCATT
48204793 ATTTGTGA
1 ATTTGTGA
48204801 ATTTGTGA
1 ATTTGTGA
48204809 ATTTGTGA
1 ATTTGTGA
48204817 ATTT
1 ATTT
48204821 TGCATTTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.25, C:0.00, G:0.21, T:0.54
Consensus pattern (8 bp):
ATTTGTGA
Found at i:48219510 original size:27 final size:26
Alignment explanation
Indices: 48219454--48219564 Score: 150
Period size: 27 Copynumber: 4.2 Consensus size: 26
48219444 AGCATGGCTG
* *
48219454 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
48219480 CCAGAACAAATAATCGTGGCAGAGCCA
1 CCAGAACAGATAAT-GTGGCAGAGCCA
48219507 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
48219534 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
48219561 CCAG
1 CCAG
48219565 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
26 14 0.18
27 60 0.79
28 2 0.03
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:48221837 original size:27 final size:27
Alignment explanation
Indices: 48221807--48221930 Score: 185
Period size: 27 Copynumber: 4.6 Consensus size: 27
48221797 ATATTAAGTC
* * *
48221807 CGCACACTCAGTGCTATAGAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
48221834 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
*
48221862 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
48221889 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
48221916 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48221931 GCACAATTTA
Statistics
Matches: 91, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
27 65 0.71
28 26 0.29
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:48221891 original size:55 final size:54
Alignment explanation
Indices: 48221807--48221930 Score: 185
Period size: 55 Copynumber: 2.3 Consensus size: 54
48221797 ATATTAAGTC
* *
48221807 CGCACACTCAGTGCTATAGAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACAGAATCAACTCGCACACTTAGTGCTACATAATC-AACT
* * * *
48221862 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACAGAATCAACTCGCACACTTAGTGCTACATAATCAACT
48221916 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48221931 GCACAATTTA
Statistics
Matches: 63, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
54 18 0.29
55 45 0.71
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACAGAATCAACTCGCACACTTAGTGCTACATAATCAACT
Found at i:48223419 original size:13 final size:13
Alignment explanation
Indices: 48223401--48223425 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
48223391 TAATGGTATA
48223401 TTGAATCCATGAC
1 TTGAATCCATGAC
48223414 TTGAATCCATGA
1 TTGAATCCATGA
48223426 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:48224005 original size:27 final size:27
Alignment explanation
Indices: 48223974--48224151 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
48223964 TAAATTGTAC
48223974 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
48224001 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
48224027 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
48224055 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
48224083 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
48224110 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
48224137 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
48224152 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:48224088 original size:82 final size:81
Alignment explanation
Indices: 48223975--48224130 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
48223965 AAATTGTACA
* *
48223975 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
48224039 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
48224056 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
48224121 TGCGAGTTGA
65 TGCGAATTGA
48224131 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:48224142 original size:82 final size:81
Alignment explanation
Indices: 48223971--48224151 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
48223961 GATTAAATTG
* *
48223971 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
48224036 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
48224052 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
48224116 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
48224134 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
48224152 GGCTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:48224162 original size:27 final size:27
Alignment explanation
Indices: 48224056--48224162 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
48224046 TGACCATGCG
* * * *
48224056 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
48224084 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
48224111 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
48224138 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
48224163 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:48231320 original size:13 final size:13
Alignment explanation
Indices: 48231302--48231326 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
48231292 TAATGGTATA
48231302 TTGAATCCATGAC
1 TTGAATCCATGAC
48231315 TTGAATCCATGA
1 TTGAATCCATGA
48231327 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:48231927 original size:27 final size:27
Alignment explanation
Indices: 48231871--48232047 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
48231861 TAAATTGTAC
48231871 AGCACTAAGTGTGCG-ATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
48231897 TGCACTAAGTGTGCGAATTGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
48231923 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
48231951 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
48231979 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
48232006 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
48232033 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
48232048 GGCTCAATAT
Statistics
Matches: 131, Mismatches: 16, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
26 14 0.11
27 94 0.72
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:48231984 original size:82 final size:80
Alignment explanation
Indices: 48231872--48232026 Score: 231
Period size: 82 Copynumber: 1.9 Consensus size: 80
48231862 AAATTGTACA
* *
48231872 GCACTAAGTGTGCGATTGACTATGTTGCACTAAGTGTGCGAATTGAATATG-ATGCACTAAGTGT
1 GCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAATTGAATACGTA-GCACTAAGTGT
48231936 GCGAATTGACCATGCG
65 GCGAATTGACCATGCG
* *
48231952 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA--TTGACTATGTAGCACTAAGTGTGCGAATTGAATACGTAGCACTAAGTG
*
48232017 TGCGAGTTGA
64 TGCGAATTGA
48232027 TTATATAGCA
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
80 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (80 bp):
GCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAATTGAATACGTAGCACTAAGTGTG
CGAATTGACCATGCG
Found at i:48232038 original size:82 final size:80
Alignment explanation
Indices: 48231868--48232047 Score: 227
Period size: 82 Copynumber: 2.2 Consensus size: 80
48231858 GATTAAATTG
* *
48231868 TACAGCACTAAGTGTGCGATTGACTATGTTGCACTAAGTGTGCGAATTGAATATGATGCACTAAG
1 TACAGCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAATTGAATACGATGCACTAAG
48231933 TGTGCGAATTGACCA
66 TGTGCGAATTGACCA
* * * *
48231948 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA--TTGACTATGTAGCACTAAGTGTGCGAATTGAATACGAT-GCACT
* **
48232012 AAGTGTGCGAGTTGATTA
63 AAGTGTGCGAATTGACCA
* *
48232030 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
48232048 GGCTCAATAT
Statistics
Matches: 84, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
80 17 0.20
81 1 0.01
82 66 0.79
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.30
Consensus pattern (80 bp):
TACAGCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAATTGAATACGATGCACTAAG
TGTGCGAATTGACCA
Found at i:48232058 original size:27 final size:27
Alignment explanation
Indices: 48231952--48232058 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
48231942 TGACCATGCG
* * * *
48231952 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
48231980 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
48232007 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
48232034 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
48232059 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:48235922 original size:19 final size:20
Alignment explanation
Indices: 48235885--48235922 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
48235875 ATAAGGTGGT
48235885 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
48235905 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
48235923 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:48244665 original size:42 final size:40
Alignment explanation
Indices: 48244556--48244706 Score: 108
Period size: 43 Copynumber: 3.5 Consensus size: 40
48244546 ATCTGAAATA
* * *
48244556 TCGTGTAAGACCGTTTCTGGGACACAGGCTTCG-ATTTGAGATT
1 TCGTGTAAGACCCTGTCTGGGACAC-GGCATCGTA-TT--GATT
* * *
48244599 TACGTGTAAGACCATGTTTAGGACATCGGCATCGTATCTGATT
1 T-CGTGTAAGACCCTGTCTGGGACA-CGGCATCGTAT-TGATT
*
48244642 TCGTGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGAATT
1 TCGTGTAAGACCCTGTCTGGGACA-CGGCATCG-TATTG-ATT
* *
48244685 ACATGTAAGACCAC-GTCTGGGA
1 TCGTGTAAGACC-CTGTCTGGGA
48244707 TGTTGGCATT
Statistics
Matches: 89, Mismatches: 12, Indels: 14
0.77 0.10 0.12
Matches are distributed among these distances:
42 29 0.33
43 30 0.34
44 27 0.30
45 3 0.03
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.29
Consensus pattern (40 bp):
TCGTGTAAGACCCTGTCTGGGACACGGCATCGTATTGATT
Found at i:48244703 original size:43 final size:43
Alignment explanation
Indices: 48244557--48244706 Score: 130
Period size: 42 Copynumber: 3.5 Consensus size: 43
48244547 TCTGAAATAT
*** *
48244557 CGTGTAAGACCGTTTCTGGGACACAGGCTTCGAT-TTGAGATTTA
1 CGTGTAAGACCACGTCTGGGACACAGGCATCGATATTGA-A-TTA
* * * *
48244601 CGTGTAAGACCATGTTTAGGACATC-GGCATCG-TATCTG-ATTT
1 CGTGTAAGACCACGTCTGGGACA-CAGGCATCGATAT-TGAATTA
*
48244643 CGTGTAAGACC-CTGTCTGGGACAGAGGCATCGATATTGAATTA
1 CGTGTAAGACCAC-GTCTGGGACACAGGCATCGATATTGAATTA
*
48244686 CATGTAAGACCACGTCTGGGA
1 CGTGTAAGACCACGTCTGGGA
48244707 TGTTGGCATT
Statistics
Matches: 86, Mismatches: 12, Indels: 17
0.75 0.10 0.15
Matches are distributed among these distances:
42 30 0.35
43 26 0.30
44 27 0.31
45 3 0.03
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACACAGGCATCGATATTGAATTA
Found at i:48246670 original size:43 final size:43
Alignment explanation
Indices: 48246623--48246735 Score: 140
Period size: 44 Copynumber: 2.6 Consensus size: 43
48246613 GGAACGTTGA
* *
48246623 CTTCGATCTGAAATATCGTGTAAGACCGTGTCTGGGACACAGG
1 CTTCGATCTGAAATTTCGTGTAAGACCATGTCTGGGACACAGG
* **
48246666 CTTCGATTTGAAATTTACGTGTAAGACCATGTCTGGGACATTGG
1 CTTCGATCTGAAATTT-CGTGTAAGACCATGTCTGGGACACAGG
*
48246710 CATCGTATCTG--ATTTCGTGTAAGACC
1 CTTCG-ATCTGAAATTTCGTGTAAGACC
48246736 CTATTTGGGA
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
42 11 0.18
43 18 0.30
44 28 0.46
45 4 0.07
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (43 bp):
CTTCGATCTGAAATTTCGTGTAAGACCATGTCTGGGACACAGG
Found at i:48246754 original size:42 final size:42
Alignment explanation
Indices: 48246625--48246789 Score: 134
Period size: 43 Copynumber: 3.8 Consensus size: 42
48246615 AACGTTGACT
* * *
48246625 TCGATCTGAAATATCGTGTAAGACCGTGTCTGGGACACAGGCT
1 TCGATCTG-AATTTCGTGTAAGACCATGTCTGGGACACAGGCA
* **
48246668 TCGATTTGAAATTTACGTGTAAGACCATGTCTGGGACATTGGCA
1 TCGATCTG-AATTT-CGTGTAAGACCATGTCTGGGACACAGGCA
* * * *
48246712 TCGTATCTG-ATTTCGTGTAAGACCCTATTTGGGACAGAGGCA
1 TCG-ATCTGAATTTCGTGTAAGACCATGTCTGGGACACAGGCA
* * * * * *
48246754 TTGATATTGAATTACATGTAAGACCACGTCTAGGAC
1 TCGAT-CTGAATTTCGTGTAAGACCATGTCTGGGAC
48246790 GTTGGCATTG
Statistics
Matches: 97, Mismatches: 21, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
41 2 0.02
42 28 0.29
43 35 0.36
44 28 0.29
45 4 0.04
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (42 bp):
TCGATCTGAATTTCGTGTAAGACCATGTCTGGGACACAGGCA
Found at i:48250207 original size:16 final size:16
Alignment explanation
Indices: 48250186--48250236 Score: 93
Period size: 16 Copynumber: 3.2 Consensus size: 16
48250176 AAGAAAGAGC
48250186 AAATACGCTAGTAAAT
1 AAATACGCTAGTAAAT
48250202 AAATACGCTAGTAAAT
1 AAATACGCTAGTAAAT
*
48250218 AAACACGCTAGTAAAT
1 AAATACGCTAGTAAAT
48250234 AAA
1 AAA
48250237 ATACTAGAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.53, C:0.14, G:0.12, T:0.22
Consensus pattern (16 bp):
AAATACGCTAGTAAAT
Found at i:48254026 original size:15 final size:16
Alignment explanation
Indices: 48253994--48254026 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
48253984 ACCTTGAATT
48253994 TGTTTAATTTTTTATG
1 TGTTTAATTTTTTATG
48254010 TGTTTAATTTTTT-TG
1 TGTTTAATTTTTTATG
48254025 TG
1 TG
48254027 AAAAAAAGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.15, C:0.00, G:0.15, T:0.70
Consensus pattern (16 bp):
TGTTTAATTTTTTATG
Found at i:48255878 original size:89 final size:89
Alignment explanation
Indices: 48255727--48255906 Score: 306
Period size: 89 Copynumber: 2.0 Consensus size: 89
48255717 GGTTAATAGT
*
48255727 GCCATACTTGATGCCATTCACTCTTTGAGCAATGATGTTCGAAGTCTTCAAAAAGAGGTTCGATC
1 GCCATAATTGATGCCATTCACTCTTTGAGCAATGATGTTCGAAGTCTTCAAAAAGAGGTTCGATC
*
48255792 TCATAGGGAAGAAATGAACTCTAA
66 TCATAGGGAAGAAATGAACACTAA
* * *
48255816 GCCATAATTGATGCCATTCACTCTTTGAGCAATGATGTTCGAGGTCTTTAAGAAGAGGTTCGATC
1 GCCATAATTGATGCCATTCACTCTTTGAGCAATGATGTTCGAAGTCTTCAAAAAGAGGTTCGATC
*
48255881 TCATAGGGAAGACATGAACACTAA
66 TCATAGGGAAGAAATGAACACTAA
48255905 GC
1 GC
48255907 TATCTATTTT
Statistics
Matches: 85, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
89 85 1.00
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.28
Consensus pattern (89 bp):
GCCATAATTGATGCCATTCACTCTTTGAGCAATGATGTTCGAAGTCTTCAAAAAGAGGTTCGATC
TCATAGGGAAGAAATGAACACTAA
Found at i:48256661 original size:21 final size:21
Alignment explanation
Indices: 48256598--48256662 Score: 57
Period size: 19 Copynumber: 3.2 Consensus size: 21
48256588 TCAAGTAGTG
* *
48256598 AAAATGA-TTTCAATCAAGTT
1 AAAATGATTTTCAAACAAGTC
* *
48256618 AAAATCATTTT--AGCACA-TC
1 AAAATGATTTTCAAACA-AGTC
48256637 AAAATGATTTTCAAACAAGTC
1 AAAATGATTTTCAAACAAGTC
48256658 AAAAT
1 AAAAT
48256663 TGCTCAAGGC
Statistics
Matches: 35, Mismatches: 5, Indels: 9
0.71 0.10 0.18
Matches are distributed among these distances:
19 14 0.40
20 8 0.23
21 13 0.37
ACGTcount: A:0.48, C:0.14, G:0.08, T:0.31
Consensus pattern (21 bp):
AAAATGATTTTCAAACAAGTC
Found at i:48259893 original size:6 final size:6
Alignment explanation
Indices: 48259865--48259952 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
48259855 AAGAAACATT
* * *
48259865 ATCAGA A-CTAGA ATCAAA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
48259914 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
48259953 TACTATCAGG
Statistics
Matches: 64, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
5 4 0.06
6 52 0.81
7 6 0.09
8 2 0.03
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:48259917 original size:31 final size:31
Alignment explanation
Indices: 48259874--48259984 Score: 132
Period size: 31 Copynumber: 3.5 Consensus size: 31
48259864 TATCAGAACT
* *
48259874 AGAATCAAAATCAGAATCAGAATTAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAGGTAAC
* *
48259905 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGAATCAGGTAAC
* ** *
48259936 AGAATCAAAATCAGAATTACTATCAGGTAAT
1 AGAATCAAAATCAGAATCAGAATCAGGTAAC
*
48259967 AGAATAAAAAATCAGAAT
1 AGAAT-CAAAATCAGAAT
48259985 GTGAATGCAA
Statistics
Matches: 70, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
31 59 0.84
32 11 0.16
ACGTcount: A:0.50, C:0.13, G:0.16, T:0.21
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGAATCAGGTAAC
Found at i:48260120 original size:27 final size:26
Alignment explanation
Indices: 48260089--48260184 Score: 111
Period size: 27 Copynumber: 3.6 Consensus size: 26
48260079 TTATCAAATG
* *
48260089 TTGTGACAAAGTCACCAGATACAGATA
1 TTGTGGCAAAGCCACCAGA-ACAGATA
* *
48260116 TTGTGGCAGAGCCACCAGAATAGATA
1 TTGTGGCAAAGCCACCAGAACAGATA
*
48260142 TTTGTGGCATAGCCACCAGAAACAGATA
1 -TTGTGGCAAAGCCACCAG-AACAGATA
*
48260170 ATGTGGCAAAGCCAC
1 TTGTGGCAAAGCCAC
48260185 TTAACAAAAT
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
26 6 0.10
27 46 0.78
28 7 0.12
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (26 bp):
TTGTGGCAAAGCCACCAGAACAGATA
Found at i:48260372 original size:22 final size:22
Alignment explanation
Indices: 48260344--48260407 Score: 85
Period size: 22 Copynumber: 2.9 Consensus size: 22
48260334 CAAATACGTG
*
48260344 TGGCACACAGCCATAATCAGGT
1 TGGCACAAAGCCATAATCAGGT
*
48260366 TGGCACAAAGCCAT-ATGTAGGT
1 TGGCACAAAGCCATAAT-CAGGT
*
48260388 TGACACAAAGCCATAATCAG
1 TGGCACAAAGCCATAATCAG
48260408 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.36, C:0.23, G:0.22, T:0.19
Consensus pattern (22 bp):
TGGCACAAAGCCATAATCAGGT
Found at i:48260899 original size:27 final size:27
Alignment explanation
Indices: 48260841--48261015 Score: 208
Period size: 27 Copynumber: 6.3 Consensus size: 27
48260831 GGGGCAAAAT
* * * *
48260841 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
48260867 GGTAATTCCACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
48260894 GATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
48260921 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
48260948 GGTAATTCTACCCTACAGGGTCTGTAGGTATTCC
1 GGTAATTCTACCCTACAGGG---GTA--T-TT-C
48260982 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
48261009 GATAATT
1 GGTAATT
48261016 TTATAAACAA
Statistics
Matches: 130, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
26 14 0.11
27 83 0.64
28 2 0.02
29 1 0.01
30 3 0.02
31 3 0.02
32 1 0.01
33 2 0.02
34 21 0.16
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:48261058 original size:54 final size:54
Alignment explanation
Indices: 48260997--48261177 Score: 283
Period size: 54 Copynumber: 3.4 Consensus size: 54
48260987 TTCTACCCTA
* * *
48260997 CAGGGGTATTTCGATAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAAC
* * * *
48261051 CAAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACATAC
1 CAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAAC
*
48261105 CAGGGGTATTTTGGTAATTTTATAAGCCAAGGGTA-TTTAGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAAC
48261158 CAGGGGTATTTTGGTAATTT
1 CAGGGGTATTTTGGTAATTT
48261178 GGTAAACTAA
Statistics
Matches: 115, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
53 36 0.31
54 79 0.69
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (54 bp):
CAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAAC
Found at i:48261184 original size:27 final size:27
Alignment explanation
Indices: 48261000--48261177 Score: 232
Period size: 27 Copynumber: 6.6 Consensus size: 27
48260990 TACCCTACAG
* * *
48261000 GGGTATTTCGATAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* *
48261027 GGGTATTTTAGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
*
48261054 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * *
48261081 GGGTATTTTGGTAATTTTACATACCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
*
48261108 GGGTATTTTGGTAATTTTATAAGCCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * *
48261135 GGGTA-TTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
48261161 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
48261178 GGTAAACTAA
Statistics
Matches: 129, Mismatches: 21, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
26 22 0.17
27 107 0.83
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAA
Found at i:48262693 original size:46 final size:44
Alignment explanation
Indices: 48262624--48262742 Score: 159
Period size: 46 Copynumber: 2.6 Consensus size: 44
48262614 GTTATTTGTC
*
48262624 TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATG
1 TGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CTACAAGATG
*
48262668 TAAGCCAGTGTAAGACATGTTTGGGACATGCATCGGCTACAAGATG
1 T--GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATG
* *
48262714 TGTCAGTGTAAGACCATGTCTAGGACATG
1 TGCCAGTGTAAGA-CATGTCTGGGACATG
48262743 GCATTGGCAC
Statistics
Matches: 66, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
44 12 0.18
45 15 0.23
46 39 0.59
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (44 bp):
TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATG
Found at i:48267260 original size:30 final size:30
Alignment explanation
Indices: 48267219--48267275 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
48267209 AAAATTATAT
*
48267219 TTTGGCAAAATTACAATTTTGCCCCTAAAC
1 TTTGGCAAAATTACAATTTTACCCCTAAAC
* *
48267249 TTTGTCAAAATTACATTTTTACCCCTA
1 TTTGGCAAAATTACAATTTTACCCCTA
48267276 GGCTCGTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.32, C:0.23, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTGGCAAAATTACAATTTTACCCCTAAAC
Found at i:48269960 original size:42 final size:43
Alignment explanation
Indices: 48269852--48269962 Score: 125
Period size: 43 Copynumber: 2.6 Consensus size: 43
48269842 AGCATATACA
* * * * *
48269852 ATGCCAACGTCCCAGACGTGGTCATACATGTAATCAAACATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGAAATCAAACATAG
* * * * *
48269895 ATGCCATTGTCCCAGATAAGGTCTTACATGAAATCAGATA-AG
1 ATGCCAATGTCCCAGACATGGTCTTACATGAAATCAAACATAG
48269937 ATGCCAATGTCCCAGACATGGTCTTA
1 ATGCCAATGTCCCAGACATGGTCTTA
48269963 TACTCAAAAT
Statistics
Matches: 55, Mismatches: 13, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
42 24 0.44
43 31 0.56
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.24
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGAAATCAAACATAG
Found at i:48284361 original size:27 final size:27
Alignment explanation
Indices: 48284330--48284385 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
48284320 ATTACTAGAA
48284330 TGGTTTATAAAATCACCAAAATACCCC
1 TGGTTTATAAAATCACCAAAATACCCC
* *
48284357 TGGTTTGTAAAATTACCAAAATACCCC
1 TGGTTTATAAAATCACCAAAATACCCC
48284384 TG
1 TG
48284386 ATTTGTGAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.38, C:0.23, G:0.11, T:0.29
Consensus pattern (27 bp):
TGGTTTATAAAATCACCAAAATACCCC
Found at i:48284390 original size:27 final size:27
Alignment explanation
Indices: 48284337--48284518 Score: 143
Period size: 27 Copynumber: 6.7 Consensus size: 27
48284327 GAATGGTTTA
* *
48284337 TAAAATCACCAAAATACCC-CTGGTTTG
1 TAAAATTACCAAAATACCCTC-GATTTG
48284364 TAAAATTACCAAAATACCC-CTGATTTG
1 TAAAATTACCAAAATACCCTC-GATTTG
* ** **
48284391 TGAAATTACTGAAATACCCTCGACCTG
1 TAAAATTACCAAAATACCCTCGATTTG
*** * *
48284418 TAAAATTATTGAAATACCCTCAACTTG
1 TAAAATTACCAAAATACCCTCGATTTG
* * *
48284445 TAAAATTACCAAAGTATCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTG
*** *
48284472 TAAAATTACCATTTTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTG
* *
48284499 CAAAATTATCAAAATACCCT
1 TAAAATTACCAAAATACCCT
48284519 TGTAGGGTAG
Statistics
Matches: 126, Mismatches: 28, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
27 125 0.99
28 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.08, T:0.31
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCTCGATTTG
Found at i:48284540 original size:27 final size:27
Alignment explanation
Indices: 48284510--48284750 Score: 270
Period size: 27 Copynumber: 8.9 Consensus size: 27
48284500 AAAATTATCA
* *
48284510 AAATACCCTTGTAGGGTAGAAATACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
* * *
48284537 AAATACCCCCGTAGGATAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACTG
* *
48284564 AAATACCCTTGTAGGGTAGAAATACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
* *
48284591 AAATACCCCTGTTGGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACTG
48284618 AAATACCCCTGTAGGGTAGAATTA-TCG
1 AAATACCCCTGTAGGGTAGAATTACT-G
* *
48284645 AAATACCCTTGTAGGGTAGAAATACCT-
1 AAATACCCCTGTAGGGTAGAATTA-CTG
* *
48284672 AAATACCCCTGTAGGATAGAATTATTG
1 AAATACCCCTGTAGGGTAGAATTACTG
* * *
48284699 AAATACTCCTGTAAGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACTG
* * * *
48284726 AGATACCCTTGTGGGGTAAAATTAC
1 AAATACCCCTGTAGGGTAGAATTAC
48284751 CATTTTGCCC
Statistics
Matches: 177, Mismatches: 33, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
26 2 0.01
27 174 0.98
29 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACTG
Found at i:48284762 original size:81 final size:81
Alignment explanation
Indices: 48284511--48284753 Score: 305
Period size: 81 Copynumber: 3.0 Consensus size: 81
48284501 AAATTATCAA
* * *
48284511 AATACCCTTGTAGGGTAGAAATACTGAAATACCCCCGT-AGGATAGAATTACCGAAATACCCTTG
1 AATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAAGG-TAGAATTACCGAAATACCCTTG
*
48284575 TAGGGTAGAAATACTGA-
65 TAGGGTAGAAATAC-CAT
* * * *
48284592 AATACCCCTGTTGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGT
1 AATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGT
48284657 AGGGTAGAAATACC-T
66 AGGGTAGAAATACCAT
* * * *
48284672 AAATACCCCTGTAGGATAGAATTATTGAAATACTCCTGTAAGGTAGAATTACCGAGATACCCTTG
1 -AATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTG
*
48284737 TGGGGTA-AAATTACCAT
65 TAGGGTAGAAA-TACCAT
48284754 TTTGCCCCTA
Statistics
Matches: 140, Mismatches: 17, Indels: 9
0.84 0.10 0.05
Matches are distributed among these distances:
80 3 0.02
81 134 0.96
82 3 0.02
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.26
Consensus pattern (81 bp):
AATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGT
AGGGTAGAAATACCAT
Found at i:48287351 original size:47 final size:47
Alignment explanation
Indices: 48287295--48287542 Score: 351
Period size: 47 Copynumber: 5.3 Consensus size: 47
48287285 TACAAGTATA
* *
48287295 TATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAACATGTG
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTG
*
48287342 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTG
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTG
* **
48287389 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTG
*
48287436 TATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-A-GTG
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTG
* *
48287481 TATCTATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGA-A-GTG
1 TA--TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTG
48287528 TATAAATGTGATAAG
1 TAT--ATGTGATAAG
48287543 TCCCGAAGGG
Statistics
Matches: 185, Mismatches: 12, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
45 4 0.02
46 1 0.01
47 180 0.97
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.27
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTG
Found at i:48287420 original size:22 final size:22
Alignment explanation
Indices: 48287393--48287514 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
48287383 CATGTGTATG
48287393 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
48287415 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
48287440 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ** *
48287462 TGTGATGAATG-TGAAAGTGTATCTA
1 TGTGAT-AAGGCCG-AA-TG-GCCAA
48287487 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
48287509 TGTGAT
1 TGTGAT
48287515 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 22 0.31
23 16 0.23
24 16 0.23
25 16 0.23
ACGTcount: A:0.33, C:0.12, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:48290300 original size:47 final size:47
Alignment explanation
Indices: 48290213--48290481 Score: 403
Period size: 47 Copynumber: 5.6 Consensus size: 47
48290203 GTATATTTGA
48290213 ATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG----TATATATGTGATAAGGCCTAATGGCCGATGTG
48290264 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
**
48290311 ATGAATGTGAAAGCATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
48290358 ATGAATGTGAAAGCGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* * * * * *
48290405 ATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
48290452 ATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
48290482 TCCCGAAGGG
Statistics
Matches: 204, Mismatches: 14, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
47 189 0.93
51 15 0.07
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
Found at i:48290656 original size:37 final size:37
Alignment explanation
Indices: 48290600--48290678 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
48290590 CCGAGCTCTA
* *
48290600 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
48290637 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
48290674 AAGAC
1 AAGAC
48290679 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:48293995 original size:31 final size:31
Alignment explanation
Indices: 48293957--48294033 Score: 100
Period size: 31 Copynumber: 2.5 Consensus size: 31
48293947 TTGCATTCCC
* * *
48293957 ATTCTGATTTTGATTCTGTTACCTGATACTA
1 ATTCTGATTCTGATTCTGTCACCTAATACTA
* * *
48293988 ATTCTGATTCTGATTCTGTCACTTAATTCTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTA
48294019 ATTCTGATTCTGATT
1 ATTCTGATTCTGATT
48294034 TTGATTCTGA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTAATACTA
Found at i:48293999 original size:6 final size:6
Alignment explanation
Indices: 48293957--48294044 Score: 72
Period size: 6 Copynumber: 14.3 Consensus size: 6
48293947 TTGCATTCCC
* * *
48293957 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTA ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
48294006 -TCACTTA ATTCTG ATTCTG ATTCTG ATTTTG ATTCTG AT
1 AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT
48294045 CTAGTTCTGA
Statistics
Matches: 64, Mismatches: 12, Indels: 12
0.73 0.14 0.14
Matches are distributed among these distances:
5 3 0.05
6 54 0.84
7 5 0.08
8 2 0.03
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:48295009 original size:18 final size:17
Alignment explanation
Indices: 48294982--48295015 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
48294972 TTTGTTTTCG
*
48294982 CAGTTTGTAGTCTTACTA
1 CAGTTCGTAGT-TTACTA
48295000 CAGTTCGTAGTTTACT
1 CAGTTCGTAGTTTACT
48295016 CTAACTAAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.21, C:0.18, G:0.18, T:0.44
Consensus pattern (17 bp):
CAGTTCGTAGTTTACTA
Found at i:48302897 original size:27 final size:27
Alignment explanation
Indices: 48302866--48303043 Score: 153
Period size: 27 Copynumber: 6.6 Consensus size: 27
48302856 ATATTGAGCC
* *
48302866 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
48302893 AGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
48302920 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** * ** *
48302948 CGCACACTTAGTGCCGCTTGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
48302975 CGCACACTTAGTGCCT-CATATTCATTT
1 CGCACACTTAGTG-CTACATAATCAACT
* *
48303002 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
48303029 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48303044 GTACAATTTA
Statistics
Matches: 122, Mismatches: 25, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
26 1 0.01
27 97 0.80
28 24 0.20
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:48316930 original size:11 final size:12
Alignment explanation
Indices: 48316909--48316934 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
48316899 AGTGGCTGTC
48316909 TTTTTCTTTTTT
1 TTTTTCTTTTTT
48316921 TTTTTCTTTTTT
1 TTTTTCTTTTTT
48316933 TT
1 TT
48316935 ATCATTGATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (12 bp):
TTTTTCTTTTTT
Found at i:48317506 original size:8 final size:7
Alignment explanation
Indices: 48317479--48317513 Score: 52
Period size: 7 Copynumber: 4.9 Consensus size: 7
48317469 CAAAATGGAC
*
48317479 TTTAAGG
1 TTTAGGG
48317486 TTTAGGG
1 TTTAGGG
48317493 TTTAGGG
1 TTTAGGG
48317500 TTTTAGGG
1 -TTTAGGG
48317508 TTTAGG
1 TTTAGG
48317514 ATTTTAGCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
7 19 0.73
8 7 0.27
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.46
Consensus pattern (7 bp):
TTTAGGG
Found at i:48317506 original size:15 final size:15
Alignment explanation
Indices: 48317486--48317520 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
48317476 GACTTTAAGG
*
48317486 TTTAGGGTTTAGGGT
1 TTTAGGGTTTAGGAT
48317501 TTTAGGGTTTAGGAT
1 TTTAGGGTTTAGGAT
48317516 TTTAG
1 TTTAG
48317521 CTAACATTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.17, C:0.00, G:0.34, T:0.49
Consensus pattern (15 bp):
TTTAGGGTTTAGGAT
Found at i:48321403 original size:74 final size:74
Alignment explanation
Indices: 48321278--48321427 Score: 264
Period size: 74 Copynumber: 2.0 Consensus size: 74
48321268 TTTTTAGGGA
**
48321278 GAAAGATTACTTTCAATGCTATACTAAACATAATTACGATACTCTGTAAAACTAAAAGTCCTTTC
1 GAAAGATTACTTTCAATGCTATACTAAACATAATTACGATACTCTAAAAAACTAAAAGTCCTTTC
48321343 CAATTGATG
66 CAATTGATG
* *
48321352 GAAAGATTACTTTCAATGCTATACTGAACATAATTATGATACTCTAAAAAACTAAAAGTCCTTTC
1 GAAAGATTACTTTCAATGCTATACTAAACATAATTACGATACTCTAAAAAACTAAAAGTCCTTTC
48321417 CAATTGATG
66 CAATTGATG
48321426 GA
1 GA
48321428 CCTGGAAAAT
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
74 72 1.00
ACGTcount: A:0.40, C:0.17, G:0.11, T:0.32
Consensus pattern (74 bp):
GAAAGATTACTTTCAATGCTATACTAAACATAATTACGATACTCTAAAAAACTAAAAGTCCTTTC
CAATTGATG
Found at i:48323316 original size:28 final size:29
Alignment explanation
Indices: 48323280--48323344 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 29
48323270 AAGGTGATTT
* * *
48323280 TTGACAAAATTGTCAATT-AGGGATTAAA
1 TTGAGAAAAGTGTAAATTGAGGGATTAAA
*
48323308 TTGAGAAAAGTGTAAATTGAGGGGTTAAA
1 TTGAGAAAAGTGTAAATTGAGGGATTAAA
*
48323337 TTGTGAAA
1 TTGAGAAA
48323345 TAAATGAAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
28 15 0.48
29 16 0.52
ACGTcount: A:0.42, C:0.03, G:0.25, T:0.31
Consensus pattern (29 bp):
TTGAGAAAAGTGTAAATTGAGGGATTAAA
Found at i:48323903 original size:43 final size:42
Alignment explanation
Indices: 48323828--48323993 Score: 133
Period size: 42 Copynumber: 3.8 Consensus size: 42
48323818 TTGTAATTAC
*
48323828 ATGTAAGACCATGTCTAGGAGATTGGCATTGGCATTGTATTGTGATT
1 ATGTAAGACCATGTCTAGGAGATTGGCATT-G---TATA-TGTGATT
*
48323875 ATGTGTAAGACCATGTCTAGGAGATTGGCATCGTATAT-TGATT
1 A--TGTAAGACCATGTCTAGGAGATTGGCATTGTATATGTGATT
* * * * *
48323918 CATGTAAGACCCTGTCTGGGACAGTGGCATTG-ATATGTGATAAC
1 -ATGTAAGACCATGTCTAGGAGATTGGCATTGTATATGTGAT--T
*
48323962 ATGTAAGACCATATCTA--AGATATGGCATTGTA
1 ATGTAAGACCATGTCTAGGAGAT-TGGCATTGTA
48323994 CGAGCTTATG
Statistics
Matches: 98, Mismatches: 13, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
41 6 0.06
42 37 0.38
43 20 0.20
44 2 0.02
45 3 0.03
47 1 0.01
48 1 0.01
49 28 0.29
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (42 bp):
ATGTAAGACCATGTCTAGGAGATTGGCATTGTATATGTGATT
Found at i:48325067 original size:42 final size:42
Alignment explanation
Indices: 48325000--48325135 Score: 200
Period size: 42 Copynumber: 3.2 Consensus size: 42
48324990 GCCCTTTTTT
* * *
48325000 CACACAGCTTGTGACACGGGTGTGTCTGGTAGCCATGTGAGG
1 CACACAGCCTGTGACACGGGCGTGTCTGGTAGCCGTGTGAGG
*
48325042 CACACAGCCTGTGACATGGGCGTGTCTGGTAGCCGTGTGAGG
1 CACACAGCCTGTGACACGGGCGTGTCTGGTAGCCGTGTGAGG
* * *
48325084 CACACGGCCTGTGACGCGGACGTGTCTGGTAGCCGTGTGAGG
1 CACACAGCCTGTGACACGGGCGTGTCTGGTAGCCGTGTGAGG
*
48325126 CACACGGCCT
1 CACACAGCCT
48325136 ATTCACACCG
Statistics
Matches: 86, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 86 1.00
ACGTcount: A:0.17, C:0.26, G:0.37, T:0.21
Consensus pattern (42 bp):
CACACAGCCTGTGACACGGGCGTGTCTGGTAGCCGTGTGAGG
Found at i:48343756 original size:39 final size:39
Alignment explanation
Indices: 48343708--48343805 Score: 135
Period size: 39 Copynumber: 2.5 Consensus size: 39
48343698 TTGTGGATAC
* *
48343708 CTGACAGCTTGTGTGAGCAGCCA-TGTAGCAACATCGTGA
1 CTGATAGCTTGTGTGAGCA-ACAGTGTAGCAACATCGTGA
* *
48343747 CTGATAGCTTGTGTGAGCAATAGTGTAGCAACATCTTGA
1 CTGATAGCTTGTGTGAGCAACAGTGTAGCAACATCGTGA
*
48343786 CCGATAGCTTGTGTGAGCAA
1 CTGATAGCTTGTGTGAGCAA
48343806 ACCCGTGAGT
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
38 1 0.02
39 52 0.98
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.27
Consensus pattern (39 bp):
CTGATAGCTTGTGTGAGCAACAGTGTAGCAACATCGTGA
Found at i:48346404 original size:30 final size:30
Alignment explanation
Indices: 48346347--48346404 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
48346337 TAGGCACTTC
** *
48346347 CACACGGGTGATCCACATGCCCGTGTGTGA
1 CACACGGGTGATCCACACACCCCTGTGTGA
48346377 CACACGGGTAGA-CCACACACCCCTGTGT
1 CACACGGGT-GATCCACACACCCCTGTGT
48346405 CATGGTCGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 22 0.92
31 2 0.08
ACGTcount: A:0.22, C:0.34, G:0.26, T:0.17
Consensus pattern (30 bp):
CACACGGGTGATCCACACACCCCTGTGTGA
Found at i:48348775 original size:28 final size:28
Alignment explanation
Indices: 48348735--48348798 Score: 119
Period size: 28 Copynumber: 2.3 Consensus size: 28
48348725 TGGAAAGTAG
48348735 TTGGGCCTGATGGGCCATATGAATGCGA
1 TTGGGCCTGATGGGCCATATGAATGCGA
*
48348763 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGCGA
48348791 TTGGGCCT
1 TTGGGCCT
48348799 AAAGGGGCCA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.19, C:0.17, G:0.36, T:0.28
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAATGCGA
Found at i:48349210 original size:53 final size:53
Alignment explanation
Indices: 48349124--48349453 Score: 396
Period size: 53 Copynumber: 6.2 Consensus size: 53
48349114 GAAATTACTA
* * * *
48349124 AAATACCCGT-GATTTGTAAAATTATCGAAATACCCCCGATTTGTAAAATTGTCG
1 AAATACCC-TCGA-TTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTATCG
* * *
48349178 AAATACCCTCGATTGTGAAATTACTAAAATACCCTCAATTTGTAAAATTATCG
1 AAATACCCTCGATTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTATCG
* ** *
48349231 AAATACCCTCGATTGTGAAATTACTGAAATACCCTCGATTTGTAAAATTATTG
1 AAATACCCTCGATTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTATCG
* * *
48349284 AAATACCCCCGATTCGTAAAATTACCAAAATACCCTCGA-TTGTGAAATTA-CTA
1 AAATACCCTCGATT-GTAAAATTACCAAAATACCCTCGATTTGTAAAATTATC-G
* * *
48349337 AAATACCCTCAATTTGTAAAATTACCAAAATACCCTCGATTTGTGAAATTAACG
1 AAATACCCTCGA-TTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTATCG
* * * *
48349391 AAACACCCTCGATTTGTAAAATTACCAAAACACCCCCAATTTGTAAAATTATCG
1 AAATACCCTCGA-TTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTATCG
48349445 AAATACCCT
1 AAATACCCT
48349454 TGTAGTGTAA
Statistics
Matches: 242, Mismatches: 28, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
53 142 0.59
54 99 0.41
55 1 0.00
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (53 bp):
AAATACCCTCGATTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTATCG
Found at i:48349279 original size:80 final size:81
Alignment explanation
Indices: 48349115--48349441 Score: 394
Period size: 80 Copynumber: 4.1 Consensus size: 81
48349105 TAACAAAGAG
* * *
48349115 AAATTACTAAAATACCCGT-GATTTGTAAAATTATCGAAATACCCCCGATTTGTAAAATT-GTCG
1 AAATTACTAAAATACCC-TCGATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTACT-A
* *
48349178 AAATACCCTCGA-TTGTG
64 AAATACCCTCAATTTGTA
* * *
48349195 AAATTACTAAAATACCCTCAATTTGTAAAATTATCGAAATACCCTCGA-TTGTGAAATTACTGAA
1 AAATTACTAAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTACTAAA
*
48349259 ATACCCTCGATTTGTA
66 ATACCCTCAATTTGTA
* * * * * * *
48349275 AAATTATTGAAATACCCCCGATTCGTAAAATTACCAAAATACCCTCGA-TTGTGAAATTACTAAA
1 AAATTACTAAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTACTAAA
48349339 ATACCCTCAATTTGTA
66 ATACCCTCAATTTGTA
* * * * *
48349355 AAATTACCAAAATACCCTCGATTTGTGAAATTAACGAAACACCCTCGATTTGTAAAATTACCAAA
1 AAATTACTAAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTACTAAA
* *
48349420 ACACCCCCAATTTGTA
66 ATACCCTCAATTTGTA
48349436 AAATTA
1 AAATTA
48349442 TCGAAATACC
Statistics
Matches: 216, Mismatches: 27, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
79 23 0.11
80 159 0.74
81 34 0.16
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.30
Consensus pattern (81 bp):
AAATTACTAAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTACTAAA
ATACCCTCAATTTGTA
Found at i:48349452 original size:27 final size:27
Alignment explanation
Indices: 48349124--48349453 Score: 359
Period size: 27 Copynumber: 12.3 Consensus size: 27
48349114 GAAATTACTA
48349124 AAATACCCGT-GATTTGTAAAATTATCG
1 AAATACCC-TCGATTTGTAAAATTATCG
* *
48349151 AAATACCCCCGATTTGTAAAATTGTCG
1 AAATACCCTCGATTTGTAAAATTATCG
* *
48349178 AAATACCCTCGA-TTGTGAAATTA-CTA
1 AAATACCCTCGATTTGTAAAATTATC-G
*
48349204 AAATACCCTCAATTTGTAAAATTATCG
1 AAATACCCTCGATTTGTAAAATTATCG
*
48349231 AAATACCCTCGA-TTGTGAAATTA-CTG
1 AAATACCCTCGATTTGTAAAATTATC-G
*
48349257 AAATACCCTCGATTTGTAAAATTATTG
1 AAATACCCTCGATTTGTAAAATTATCG
* * * *
48349284 AAATACCCCCGATTCGTAAAATTACCA
1 AAATACCCTCGATTTGTAAAATTATCG
* *
48349311 AAATACCCTCGA-TTGTGAAATTA-CTA
1 AAATACCCTCGATTTGTAAAATTATC-G
* * *
48349337 AAATACCCTCAATTTGTAAAATTACCA
1 AAATACCCTCGATTTGTAAAATTATCG
* *
48349364 AAATACCCTCGATTTGTGAAATTAACG
1 AAATACCCTCGATTTGTAAAATTATCG
* * *
48349391 AAACACCCTCGATTTGTAAAATTACCA
1 AAATACCCTCGATTTGTAAAATTATCG
* * *
48349418 AAACACCCCCAATTTGTAAAATTATCG
1 AAATACCCTCGATTTGTAAAATTATCG
48349445 AAATACCCT
1 AAATACCCT
48349454 TGTAGTGTAA
Statistics
Matches: 256, Mismatches: 37, Indels: 20
0.82 0.12 0.06
Matches are distributed among these distances:
25 3 0.01
26 64 0.25
27 187 0.73
28 2 0.01
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (27 bp):
AAATACCCTCGATTTGTAAAATTATCG
Found at i:48354123 original size:26 final size:26
Alignment explanation
Indices: 48354087--48354140 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
48354077 CAATATTGTG
48354087 TTAGCTTCTATGAAGAGTCATAACAA
1 TTAGCTTCTATGAAGAGTCATAACAA
*
48354113 TTAGCTTCTATGAAGAGTCGTAACAA
1 TTAGCTTCTATGAAGAGTCATAACAA
48354139 TT
1 TT
48354141 TTATTTTCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (26 bp):
TTAGCTTCTATGAAGAGTCATAACAA
Found at i:48355806 original size:21 final size:22
Alignment explanation
Indices: 48355780--48355825 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
48355770 AATGTAGATT
48355780 AAAAAAT-AGATAAA-AACACTA
1 AAAAAATAAGATAAATAA-ACTA
48355801 AAAAAATAAGATAAATAAACTA
1 AAAAAATAAGATAAATAAACTA
48355823 AAA
1 AAA
48355826 CTTATTTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 7 0.30
22 14 0.61
23 2 0.09
ACGTcount: A:0.74, C:0.07, G:0.04, T:0.15
Consensus pattern (22 bp):
AAAAAATAAGATAAATAAACTA
Found at i:48370863 original size:40 final size:39
Alignment explanation
Indices: 48370673--48370856 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
48370663 CGAATGATGT
* * * *
48370673 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* *
48370713 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
* * *
48370753 CCAGGCTAAG-CCCGAAGGAATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
48370791 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
48370832 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
48370857 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
39 33 0.27
40 79 0.65
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:48370878 original size:79 final size:79
Alignment explanation
Indices: 48370725--48370889 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
48370715 GGACTAAGAT
* **
48370725 CCGAAGGCATTTGTGCGAGTTACTAATTCCAGGCTAAGCCCGAAGGAATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCAGGCTAAGCCCGAAGGAATTGGAACGAGTTACTAA
*
48370790 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * * *
48370804 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCAGGCTAAG-CCCGAAGGAATTGGAACGAGTTA-C
* *
48370867 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
48370883 CCGAAGG
1 CCGAAGG
48370890 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.66
80 23 0.32
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCAGGCTAAGCCCGAAGGAATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:48379277 original size:11 final size:11
Alignment explanation
Indices: 48379215--48379289 Score: 62
Period size: 11 Copynumber: 6.9 Consensus size: 11
48379205 GATATTCCCT
*
48379215 TCAAAAATCTA
1 TCAAAATTCTA
*
48379226 TCAAATTTC-A
1 TCAAAATTCTA
** * *
48379236 TTGAAATTTTC
1 TCAAAATTCTA
* *
48379247 TCAAAATTTTC
1 TCAAAATTCTA
48379258 TCAAAATTCTA
1 TCAAAATTCTA
48379269 TCAAAATTCTA
1 TCAAAATTCTA
*
48379280 TCAAATTTCT
1 TCAAAATTCT
48379290 TTGTTTAAAA
Statistics
Matches: 51, Mismatches: 12, Indels: 2
0.78 0.18 0.03
Matches are distributed among these distances:
10 6 0.12
11 45 0.88
ACGTcount: A:0.40, C:0.17, G:0.01, T:0.41
Consensus pattern (11 bp):
TCAAAATTCTA
Found at i:48379530 original size:48 final size:47
Alignment explanation
Indices: 48379422--48379532 Score: 154
Period size: 47 Copynumber: 2.3 Consensus size: 47
48379412 AGTGATAATT
*
48379422 TTAAATTTTCAATACTATTCGATATTTTTTAATTTATGCAAATTTAA
1 TTAAAATTTCAATACTATTCGATATTTTTTAATTTATGCAAATTTAA
* *
48379469 TT-AAATTTGCAATACTATTTGATATTTTATTCATTTATGC-AATTATAA
1 TTAAAATTT-CAATACTATTCGATATTTT-TTAATTTATGCAAATT-TAA
48379517 TTAAAATTTCAATACT
1 TTAAAATTTCAATACT
48379533 GATTGACTTT
Statistics
Matches: 57, Mismatches: 3, Indels: 7
0.85 0.04 0.10
Matches are distributed among these distances:
46 5 0.09
47 24 0.42
48 22 0.39
49 6 0.11
ACGTcount: A:0.37, C:0.09, G:0.05, T:0.50
Consensus pattern (47 bp):
TTAAAATTTCAATACTATTCGATATTTTTTAATTTATGCAAATTTAA
Found at i:48379550 original size:48 final size:46
Alignment explanation
Indices: 48379422--48379552 Score: 149
Period size: 48 Copynumber: 2.7 Consensus size: 46
48379412 AGTGATAATT
* * *
48379422 TTAAATTTTCAATACTATTCGATATTTTTTAATTTATGCAAATTTAA
1 TTAAAATTTCAATACTATT-GATTTTTTTTCATTTATGCAAATTTAA
*
48379469 TT-AAATTTGCAATACTATTTGATATTTTATTCATTTATGC-AATTATAA
1 TTAAAATTT-CAATACTA-TTGAT-TTTTTTTCATTTATGCAAATT-TAA
48379517 TTAAAATTTCAATACTGATTGACTTTTTTTTCATTT
1 TTAAAATTTCAATACT-ATTGA-TTTTTTTTCATTT
48379553 TTGATGTTTG
Statistics
Matches: 72, Mismatches: 5, Indels: 13
0.80 0.06 0.14
Matches are distributed among these distances:
46 5 0.07
47 17 0.24
48 42 0.58
49 8 0.11
ACGTcount: A:0.34, C:0.09, G:0.05, T:0.52
Consensus pattern (46 bp):
TTAAAATTTCAATACTATTGATTTTTTTTCATTTATGCAAATTTAA
Found at i:48380542 original size:7 final size:7
Alignment explanation
Indices: 48380530--48380562 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
48380520 TAATAAAATG
48380530 GTATTTA
1 GTATTTA
48380537 GTATTTA
1 GTATTTA
48380544 GTATTTA
1 GTATTTA
48380551 GTATTTA
1 GTATTTA
48380558 GTATT
1 GTATT
48380563 ATGTATTATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:48380568 original size:7 final size:7
Alignment explanation
Indices: 48380558--48380582 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
48380548 TTAGTATTTA
48380558 GTATTAT
1 GTATTAT
48380565 GTATTAT
1 GTATTAT
48380572 GTATTAT
1 GTATTAT
48380579 GTAT
1 GTAT
48380583 ATAAGTAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.16, T:0.56
Consensus pattern (7 bp):
GTATTAT
Found at i:48380568 original size:14 final size:14
Alignment explanation
Indices: 48380537--48380582 Score: 60
Period size: 14 Copynumber: 3.3 Consensus size: 14
48380527 ATGGTATTTA
48380537 GTATTTAGTATT-T
1 GTATTTAGTATTAT
48380550 AGTATTTAGTATTAT
1 -GTATTTAGTATTAT
48380565 GTA-TTATGTATTAT
1 GTATTTA-GTATTAT
48380579 GTAT
1 GTAT
48380583 ATAAGTAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
13 3 0.10
14 25 0.86
15 1 0.03
ACGTcount: A:0.28, C:0.00, G:0.15, T:0.57
Consensus pattern (14 bp):
GTATTTAGTATTAT
Found at i:48384954 original size:126 final size:126
Alignment explanation
Indices: 48384729--48385083 Score: 557
Period size: 126 Copynumber: 2.8 Consensus size: 126
48384719 CAGTAGCCAG
* * *
48384729 AGAGTGTCCACGTGGGAGCTTTTTTCAGAAATTTTGCTAACAGTGCATCCTGCTTAAAGTGTTTT
1 AGAGTGTCCACGTGGGAGCTTTTTTCAGAAATTTTGCTGACAGTGCATCCTGCTTGAAGCGTTTT
*
48384794 TGACACTATTTGTTTAGAAACGTCTACTCAGAATTATTTTTCTATGAACTACTGTAACAAA
66 TGACACTATTTGTTCAGAAACGTCTACTCAGAATTATTTTTCTATGAACTACTGTAACAAA
* *
48384855 AGAGTGTCCACGTGGGATCTTTTTTCAGAAATTTTGTTGACAGTGCATCCTGCTTGAAGCGTTTT
1 AGAGTGTCCACGTGGGAGCTTTTTTCAGAAATTTTGCTGACAGTGCATCCTGCTTGAAGCGTTTT
* * *
48384920 CGACACTATTTGTTCAGAAACGTCTACTCAGAATTATTTTTCTATGAACTATTGTAGCAAA
66 TGACACTATTTGTTCAGAAACGTCTACTCAGAATTATTTTTCTATGAACTACTGTAACAAA
* * *
48384981 AGAGTGTCCACGTGGGAGCTTTTTTTAGAAATTTTGCTGACAGTGCGTCCTGCTTGAAGCATTTT
1 AGAGTGTCCACGTGGGAGCTTTTTTCAGAAATTTTGCTGACAGTGCATCCTGCTTGAAGCGTTTT
* * * * *
48385046 TTACACTAGTTGTTCAAAAACATCTACTCAAAATTATT
66 TGACACTATTTGTTCAGAAACGTCTACTCAGAATTATT
48385084 CTTGCAGAAA
Statistics
Matches: 209, Mismatches: 20, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
126 209 1.00
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.37
Consensus pattern (126 bp):
AGAGTGTCCACGTGGGAGCTTTTTTCAGAAATTTTGCTGACAGTGCATCCTGCTTGAAGCGTTTT
TGACACTATTTGTTCAGAAACGTCTACTCAGAATTATTTTTCTATGAACTACTGTAACAAA
Found at i:48385697 original size:19 final size:19
Alignment explanation
Indices: 48385627--48385697 Score: 94
Period size: 19 Copynumber: 3.8 Consensus size: 19
48385617 ACCATTATGT
*
48385627 ATCAATTAACCCTAAATTA
1 ATCAATTAACCCTAATTTA
*
48385646 ATCAATTAACCTTAAATTTA
1 ATCAATTAACCCT-AATTTA
48385666 ATCAA-T--CCCTAATTTA
1 ATCAATTAACCCTAATTTA
48385682 ATCAATTAACCCTAAT
1 ATCAATTAACCCTAAT
48385698 ACCCAAAATT
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
16 11 0.24
17 4 0.09
19 20 0.44
20 10 0.22
ACGTcount: A:0.44, C:0.21, G:0.00, T:0.35
Consensus pattern (19 bp):
ATCAATTAACCCTAATTTA
Found at i:48385860 original size:32 final size:33
Alignment explanation
Indices: 48385808--48385869 Score: 99
Period size: 32 Copynumber: 1.9 Consensus size: 33
48385798 TAAAAAACCC
48385808 TAAATCAATTAAATCCTTAAAAAACCCTAATCA
1 TAAATCAATTAAATCCTTAAAAAACCCTAATCA
* *
48385841 TAAATTAATT-AATCCTTAAAAAATCCTAA
1 TAAATCAATTAAATCCTTAAAAAACCCTAA
48385870 CCTAAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
32 18 0.67
33 9 0.33
ACGTcount: A:0.52, C:0.18, G:0.00, T:0.31
Consensus pattern (33 bp):
TAAATCAATTAAATCCTTAAAAAACCCTAATCA
Found at i:48388375 original size:20 final size:21
Alignment explanation
Indices: 48388332--48388375 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
48388322 ATATGTAAAT
** *
48388332 AATATACTATATAAATGATTA
1 AATATACTATATAAAAAATAA
48388353 AATATAC-ATATAAAAAATAA
1 AATATACTATATAAAAAATAA
48388373 AAT
1 AAT
48388376 TAGGAAAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.32
Consensus pattern (21 bp):
AATATACTATATAAAAAATAA
Found at i:48388564 original size:17 final size:17
Alignment explanation
Indices: 48388544--48388587 Score: 72
Period size: 17 Copynumber: 2.6 Consensus size: 17
48388534 ACTCTCAAAG
48388544 AAAAATTAAATTCTAAA
1 AAAAATTAAATTCTAAA
48388561 AAAAATTAAATTCTAAA
1 AAAAATTAAATTCTAAA
*
48388578 TAAAA-TAAAT
1 AAAAATTAAAT
48388588 AAAACTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
16 5 0.19
17 21 0.81
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.30
Consensus pattern (17 bp):
AAAAATTAAATTCTAAA
Found at i:48390705 original size:24 final size:24
Alignment explanation
Indices: 48390678--48390725 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
48390668 TATAATATCA
*
48390678 TATTAGAGTAAATTATAGTTTTAT
1 TATTAGACTAAATTATAGTTTTAT
*
48390702 TATTAGTCTAAATTATAGTTTTAT
1 TATTAGACTAAATTATAGTTTTAT
48390726 ATAAATAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.35, C:0.02, G:0.10, T:0.52
Consensus pattern (24 bp):
TATTAGACTAAATTATAGTTTTAT
Found at i:48393430 original size:61 final size:61
Alignment explanation
Indices: 48393335--48393455 Score: 206
Period size: 61 Copynumber: 2.0 Consensus size: 61
48393325 TAATGTGAGG
* * *
48393335 TATCATATCAAATTCTAATTCAAGAGTATTCTTTCACATGAAACCAACCGTGGTGGCTTGT
1 TATCACATCAAATTCTAATTCAAGAGTATTCTTTCACATGAAACCAACCATGGAGGCTTGT
*
48393396 TATCACATCAATTTCTAATTCAAGAGTATTCTTTCACATGAAACCAACCATGGAGGCTTG
1 TATCACATCAAATTCTAATTCAAGAGTATTCTTTCACATGAAACCAACCATGGAGGCTTG
48393456 AAGATTAGAT
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 56 1.00
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.33
Consensus pattern (61 bp):
TATCACATCAAATTCTAATTCAAGAGTATTCTTTCACATGAAACCAACCATGGAGGCTTGT
Found at i:48406161 original size:39 final size:40
Alignment explanation
Indices: 48406047--48406231 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
48406037 GCTACTCGTT
*
48406047 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
48406087 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
48406127 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
** * * * *
48406166 CAAATGCCTTC-GGATCTTAGTTCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
48406207 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
48406232 CATCATTCGA
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.26
40 77 0.62
41 13 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:48406192 original size:79 final size:81
Alignment explanation
Indices: 48406049--48406231 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
48406039 TACTCGTTCA
* *
48406049 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
* *
48406113 TTTAGTAAC-TCGCACC
66 TATAGTAACTTAGCA-C
***
48406129 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTTCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
48406191 ATATGGTCACTTAGCAC
65 ATATAGTAACTTAGCAC
*
48406208 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
48406232 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 28 0.31
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:48407418 original size:56 final size:56
Alignment explanation
Indices: 48407356--48407587 Score: 437
Period size: 56 Copynumber: 4.1 Consensus size: 56
48407346 TATTAGTTTA
48407356 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
48407412 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
48407468 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
* *
48407524 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACATAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
48407580 TTGCCCAT
1 TTGCCCAT
48407588 CATCCCTTGT
Statistics
Matches: 174, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 174 1.00
ACGTcount: A:0.23, C:0.22, G:0.09, T:0.46
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:48411290 original size:55 final size:53
Alignment explanation
Indices: 48411158--48411447 Score: 217
Period size: 55 Copynumber: 5.5 Consensus size: 53
48411148 AACTTACCAT
* * * *
48411158 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAATTCATCAA
* * * *
48411211 TGCCATGCCTTGGCATAGTATTACATGGGACCTTTGCCTTATAGTAATTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AATTCATCAA
* * * *
48411266 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTACCTTATAGAACTT-ATCAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAA-TTCATCAA
* * * *
48411320 TGCCATGCCTTGGCATGGTCTTACATGATA---T-CCTTAT---CTT-ACCAAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAATTCATC-AA
** **
48411366 TGCCATGTTCC-AAACATGGTCTTACATGGTATCCTTATCTTATAGAACTT-ATCAA
1 TGCCATG--CCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAA-TTCATCAA
*
48411421 TGCCATGCCTTGGCATGGTCTTACATG
1 TGCCATGCCTTGACATGGTCTTACATG
48411448 ATATCCTTAT
Statistics
Matches: 187, Mismatches: 32, Indels: 35
0.74 0.13 0.14
Matches are distributed among these distances:
45 4 0.02
46 9 0.05
47 16 0.09
48 2 0.01
49 6 0.03
50 1 0.01
51 1 0.01
52 7 0.04
53 36 0.19
54 47 0.25
55 52 0.28
56 6 0.03
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.36
Consensus pattern (53 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAATTCATCAA
Found at i:48411337 original size:54 final size:54
Alignment explanation
Indices: 48411147--48411461 Score: 276
Period size: 54 Copynumber: 6.0 Consensus size: 54
48411137 TTTCCTTTTT
* * * * * *
48411147 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-
1 GAACTTATCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTATA
* * * * * ** *
48411200 GAACTCACCAATGCCATGCCTTGGCATAGTATTACATGGGA-CCTTTGCCTTATA
1 GAACTTATCAATGCCATGCCTTGACATGGTCTTACATGATATCC-TTACCTTATA
* *
48411254 GTAA-TTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTACCTTATA
1 G-AACTT-ATCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTATA
* *
48411309 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTATC-T-T-
1 GAACTTATCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTATA
* ** * *
48411360 --AC-CA--AATGCCATGTTCC-AAACATGGTCTTACATGGTATCCTTATCTTATA
1 GAACTTATCAATGCCATG--CCTTGACATGGTCTTACATGATATCCTTACCTTATA
* *
48411410 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTATCTTA
1 GAACTTATCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTA
48411462 CCAAATGCCA
Statistics
Matches: 213, Mismatches: 32, Indels: 33
0.77 0.12 0.12
Matches are distributed among these distances:
46 9 0.04
47 24 0.11
48 4 0.02
49 3 0.01
52 5 0.02
53 46 0.22
54 70 0.33
55 50 0.23
56 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.36
Consensus pattern (54 bp):
GAACTTATCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTATA
Found at i:48411388 original size:47 final size:47
Alignment explanation
Indices: 48411333--48411533 Score: 226
Period size: 47 Copynumber: 4.1 Consensus size: 47
48411323 CATGCCTTGG
48411333 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
* * ***
48411380 CATGGTCTTACATGGTATCCTTATCTTATAGAACTTATCAATGCCATG--CCTTGG
1 CATGGTCTTACATGATATCCTTATC-T-T---AC-CA--AATGCCATGTTCC-AAA
48411434 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
* * * *
48411481 CATGGTTTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCGAA
1 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
48411528 CATGGT
1 CATGGT
48411534 ATCCTTGTGT
Statistics
Matches: 129, Mismatches: 14, Indels: 22
0.78 0.08 0.13
Matches are distributed among these distances:
46 9 0.07
47 73 0.57
48 4 0.03
49 3 0.02
52 3 0.02
53 4 0.03
54 24 0.19
55 9 0.07
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.35
Consensus pattern (47 bp):
CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
Found at i:48411508 original size:101 final size:101
Alignment explanation
Indices: 48411278--48411508 Score: 417
Period size: 101 Copynumber: 2.3 Consensus size: 101
48411268 CCATGTCTTG
* * *
48411278 ACATGGTCTTACATGATTTCCTTACCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
1 ACATGGTCTTACATGGTATCCTTATCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
48411343 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
66 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
48411379 ACATGGTCTTACATGGTATCCTTATCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
1 ACATGGTCTTACATGGTATCCTTATCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
48411444 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
66 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
* *
48411480 ACATGGTTTTACATGGTATCCTTGTCTTA
1 ACATGGTCTTACATGGTATCCTTATCTTA
48411509 CCAAATGCCA
Statistics
Matches: 125, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
101 125 1.00
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (101 bp):
ACATGGTCTTACATGGTATCCTTATCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
Found at i:48411661 original size:44 final size:44
Alignment explanation
Indices: 48411594--48411678 Score: 143
Period size: 44 Copynumber: 1.9 Consensus size: 44
48411584 CCTTAATCAA
*
48411594 TACCGATGCCATGTATTGACATGGTCTTACATGGGATCCTTGCT
1 TACCAATGCCATGTATTGACATGGTCTTACATGGGATCCTTGCT
* *
48411638 TACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTT
1 TACCAATGCCATGTATTGACATGGTCTTACATGGGATCCTT
48411679 AACCGTCAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.35
Consensus pattern (44 bp):
TACCAATGCCATGTATTGACATGGTCTTACATGGGATCCTTGCT
Found at i:48412003 original size:29 final size:29
Alignment explanation
Indices: 48411961--48412016 Score: 112
Period size: 29 Copynumber: 1.9 Consensus size: 29
48411951 TATGTTAGTC
48411961 GATACTTCCTTGTTATCATACAAAGCCTT
1 GATACTTCCTTGTTATCATACAAAGCCTT
48411990 GATACTTCCTTGTTATCATACAAAGCC
1 GATACTTCCTTGTTATCATACAAAGCC
48412017 ATAATACAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.29, C:0.25, G:0.11, T:0.36
Consensus pattern (29 bp):
GATACTTCCTTGTTATCATACAAAGCCTT
Found at i:48412023 original size:29 final size:29
Alignment explanation
Indices: 48411962--48412023 Score: 106
Period size: 29 Copynumber: 2.1 Consensus size: 29
48411952 ATGTTAGTCG
* *
48411962 ATACTTCCTTGTTATCATACAAAGCCTTG
1 ATACTTCCTTGTTATCATACAAAGCCATA
48411991 ATACTTCCTTGTTATCATACAAAGCCATA
1 ATACTTCCTTGTTATCATACAAAGCCATA
48412020 ATAC
1 ATAC
48412024 AAAATATGGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.32, C:0.24, G:0.08, T:0.35
Consensus pattern (29 bp):
ATACTTCCTTGTTATCATACAAAGCCATA
Found at i:48412843 original size:12 final size:12
Alignment explanation
Indices: 48412826--48412850 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
48412816 TAGACACACG
48412826 CCTGTGTGTCTA
1 CCTGTGTGTCTA
48412838 CCTGTGTGTCTA
1 CCTGTGTGTCTA
48412850 C
1 C
48412851 ACGGTGCTAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.28, G:0.24, T:0.40
Consensus pattern (12 bp):
CCTGTGTGTCTA
Found at i:48419856 original size:41 final size:41
Alignment explanation
Indices: 48419810--48419897 Score: 104
Period size: 41 Copynumber: 2.1 Consensus size: 41
48419800 AGCCATGGTC
* * * * *
48419810 GTGTGAGACACACAACTTGTCACATGGGTGTGTGTGAGGTT
1 GTGTGACACACACAACCTATCACATGGGCGTGTGTGAGATT
* *
48419851 GTGTGACCCACACGACCTATCACATGGGCGTGTGTGAGATT
1 GTGTGACACACACAACCTATCACATGGGCGTGTGTGAGATT
*
48419892 ATGTGA
1 GTGTGA
48419898 TCCGCATATC
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.27
Consensus pattern (41 bp):
GTGTGACACACACAACCTATCACATGGGCGTGTGTGAGATT
Found at i:48420808 original size:15 final size:15
Alignment explanation
Indices: 48420790--48420832 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
48420780 CTATTATTCA
48420790 TATTATTATT-GTTGT
1 TATTATTATTAG-TGT
48420805 TATTATTATTAGTGT
1 TATTATTATTAGTGT
* *
48420820 TAATATTAGTAGT
1 TATTATTATTAGT
48420833 CTATTTATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 24 0.96
16 1 0.04
ACGTcount: A:0.28, C:0.00, G:0.14, T:0.58
Consensus pattern (15 bp):
TATTATTATTAGTGT
Found at i:48426298 original size:38 final size:38
Alignment explanation
Indices: 48426256--48426332 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
48426246 TATGTTAATT
48426256 TAGCAACTGATTGATTTTCTAGATTGGTAACTTATCAA
1 TAGCAACTGATTGATTTTCTAGATTGGTAACTTATCAA
48426294 TAGCAACTGATTGATTTTCTAGATTGGTAACTTATCAA
1 TAGCAACTGATTGATTTTCTAGATTGGTAACTTATCAA
48426332 T
1 T
48426333 TCGATCTCGA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.31, C:0.13, G:0.16, T:0.40
Consensus pattern (38 bp):
TAGCAACTGATTGATTTTCTAGATTGGTAACTTATCAA
Found at i:48430892 original size:55 final size:53
Alignment explanation
Indices: 48430821--48431075 Score: 252
Period size: 55 Copynumber: 4.8 Consensus size: 53
48430811 ATTAGGGTTT
* * *
48430821 AAGGATACCGTGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTTCTAAGGC
* * * * *
48430876 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT--TCTAAGGC
* * *
48430931 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-TAAGGC
* *
48430984 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGGC
* * * * *
48431033 AAGGATACCACGTAAAACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
48431076 GTACCCGCGT
Statistics
Matches: 169, Mismatches: 25, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
49 39 0.23
52 7 0.04
53 42 0.25
54 11 0.07
55 66 0.39
56 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGGC
Found at i:48431002 original size:108 final size:110
Alignment explanation
Indices: 48430831--48431028 Score: 312
Period size: 108 Copynumber: 1.8 Consensus size: 110
48430821 AAGGATACCG
*
48430831 TGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGACCA
1 TGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
*
48430896 TGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCA
66 TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
* * *
48430941 TGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAGACC
1 TGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAGACC
*
48431003 ATGTCAAGACATGGCAATGGTAAGTT
65 ATGTCAAGACATGGCAATGATAAGTT
48431029 TCAAAAGGAT
Statistics
Matches: 81, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.59
109 7 0.09
110 23 0.28
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (110 bp):
TGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
Found at i:48431278 original size:16 final size:16
Alignment explanation
Indices: 48431257--48431287 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
48431247 ATAAATTTGA
48431257 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
48431273 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
48431288 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:48438553 original size:53 final size:52
Alignment explanation
Indices: 48438380--48438632 Score: 232
Period size: 53 Copynumber: 4.8 Consensus size: 52
48438370 ATTAGGGTTT
* * *
48438380 AAGGATACCGTGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-G-TTCTAAGGC
* * * *
48438435 AAGGAAATCATGTAAGACCAT-TCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C--TAAGGC
* * *
48438489 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTC-TAAGGC
* *
48438542 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT-TCAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCT-AAGGC
* * * *
48438591 AAGGATACCACGTAAGACCATGACAAGTCATGG-AATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
48438633 GTACCCGCGT
Statistics
Matches: 169, Mismatches: 22, Indels: 21
0.80 0.10 0.10
Matches are distributed among these distances:
48 9 0.05
49 30 0.18
51 3 0.02
52 8 0.05
53 49 0.29
54 29 0.17
55 41 0.24
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.21
Consensus pattern (52 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTAAGGC
Found at i:48438843 original size:16 final size:16
Alignment explanation
Indices: 48438822--48438852 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
48438812 ATAAATTTGA
48438822 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
48438838 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
48438853 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:48443751 original size:37 final size:37
Alignment explanation
Indices: 48443693--48443795 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
48443683 CGAATAGTCC
*
48443693 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* *
48443730 CCACACGTAGTCATCGAGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
48443767 CCACACATAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
48443796 ATATATTTCC
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:48443994 original size:48 final size:48
Alignment explanation
Indices: 48443936--48444382 Score: 743
Period size: 48 Copynumber: 9.3 Consensus size: 48
48443926 ATATACACAC
* *
48443936 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
48443984 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
48444032 ATCCCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
48444080 ATCGCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
48444128 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
48444176 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
48444224 ATCTCATATATAATTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
48444272 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
48444320 ATCTCTTATATATTTCACATTAGCCATTCGGCTTTACCACATATA-AGT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACA-T
* *
48444368 ATCTCTTATATATTT
1 ATCTCATACATATTT
48444383 ATCTTGTACA
Statistics
Matches: 381, Mismatches: 17, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
47 1 0.00
48 380 1.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:48447756 original size:40 final size:40
Alignment explanation
Indices: 48447710--48447988 Score: 450
Period size: 40 Copynumber: 7.0 Consensus size: 40
48447700 GAATGCACAT
* * *
48447710 CACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
48447750 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
48447790 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
48447830 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
48447870 CATCAGCACGAATGCTCTTCGGGACTTAGCCCAGACATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* ** * *
48447910 CATCAGCACGAATGCTCTTTAGGAATTAGCCCGGACATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
48447950 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTATA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
48447989 TAACTCTCAA
Statistics
Matches: 223, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 223 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:48449328 original size:37 final size:37
Alignment explanation
Indices: 48449275--48449377 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
48449265 CGAATAGTCC
*
48449275 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
48449312 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
48449349 CCACACGTAGTCATCAGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
48449378 ATATATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:48449576 original size:48 final size:48
Alignment explanation
Indices: 48449518--48450012 Score: 846
Period size: 48 Copynumber: 10.3 Consensus size: 48
48449508 ATATACACAC
* *
48449518 ATCTCCTACATATTTCACACAAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
48449566 ATCTCATACATATTTCACACTAGCCATTAGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
48449614 ATCCCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
48449662 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
48449710 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
48449758 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
48449806 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
48449854 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
48449902 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * * *
48449950 ATCTCTTATATATTTCACATTAGCCGTTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
48449998 ATCTCTTATATATTT
1 ATCTCATACATATTT
48450013 ATCTTGTACA
Statistics
Matches: 431, Mismatches: 16, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 431 1.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:48456579 original size:18 final size:18
Alignment explanation
Indices: 48456542--48456579 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
48456532 TTGTAACACT
*
48456542 GGTTGAACGAGCTTGCAA
1 GGTTGAACGAGCTTGAAA
48456560 GGTTGAA-GAGCTTGGAAA
1 GGTTGAACGAGCTT-GAAA
48456578 GG
1 GG
48456580 AGAAAAAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.29, C:0.11, G:0.39, T:0.21
Consensus pattern (18 bp):
GGTTGAACGAGCTTGAAA
Found at i:48467207 original size:10 final size:10
Alignment explanation
Indices: 48467181--48467210 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
48467171 TGATTAAGGT
48467181 ATGATTTTTG
1 ATGATTTTTG
48467191 ATCGATTTTTG
1 AT-GATTTTTG
48467202 ATGATTTTT
1 ATGATTTTT
48467211 ACGTTTTTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.20, C:0.03, G:0.17, T:0.60
Consensus pattern (10 bp):
ATGATTTTTG
Found at i:48467207 original size:21 final size:18
Alignment explanation
Indices: 48467181--48467229 Score: 55
Period size: 17 Copynumber: 2.6 Consensus size: 18
48467171 TGATTAAGGT
48467181 ATGATTTTTGATCGATTTTTG
1 ATGATTTTT-A-CG-TTTTTG
48467202 ATGATTTTTACGTTTTTG
1 ATGATTTTTACGTTTTTG
*
48467220 -TGATTGTTAC
1 ATGATTTTTAC
48467230 TTCGTTTTCT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
17 9 0.33
18 6 0.22
19 2 0.07
20 1 0.04
21 9 0.33
ACGTcount: A:0.18, C:0.06, G:0.18, T:0.57
Consensus pattern (18 bp):
ATGATTTTTACGTTTTTG
Found at i:48467971 original size:43 final size:42
Alignment explanation
Indices: 48467923--48468089 Score: 160
Period size: 43 Copynumber: 3.9 Consensus size: 42
48467913 ATCTTGATGT
48467923 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTG
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTG
* *
48467965 AGATTACATGTAAGACCATGTTTGGGACATTGGCATCGTTAATT-
1 -GATTACATGTAAGACCATGTCTGGGACATTGGCATTG-T-ATTG
* * * * * **
48468009 GATTTCGTGTAAGACCTTGTTTGGGACAATGGCA-TCAATATG
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT-TG
* * *
48468051 TGATTACATGTAAGACCATATCTAGGATA-TGGCATTGTA
1 -GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTA
48468090 CAACTTATAT
Statistics
Matches: 100, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
40 2 0.02
41 1 0.01
42 5 0.05
43 88 0.88
44 1 0.01
45 3 0.03
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.34
Consensus pattern (42 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTG
Found at i:48471308 original size:42 final size:42
Alignment explanation
Indices: 48471242--48471391 Score: 194
Period size: 42 Copynumber: 3.5 Consensus size: 42
48471232 ACTACATGTG
* *
48471242 AGACCATATCTGGGATGTGCCATCAATATGAGACTTTGTGTA
1 AGACCATATCTGGGATATGGCATCAATATGAGACTTTGTGTA
48471284 AGACCATATCTGGGATATGGCATCAATATGAGACTTTGTGTA
1 AGACCATATCTGGGATATGGCATCAATATGAGACTTTGTGTA
* * ** * **
48471326 AGACCATAGCTGGGTTATTGGCATCGGTACGAGA-TTACATGTA
1 AGACCATATCTGGGATA-TGGCATCAATATGAGACTT-TGTGTA
48471369 AGACCATATCTGGGATATGGCAT
1 AGACCATATCTGGGATATGGCAT
48471392 TGGTACGGTA
Statistics
Matches: 95, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
42 63 0.66
43 32 0.34
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (42 bp):
AGACCATATCTGGGATATGGCATCAATATGAGACTTTGTGTA
Found at i:48473094 original size:46 final size:47
Alignment explanation
Indices: 48472988--48473109 Score: 156
Period size: 46 Copynumber: 2.6 Consensus size: 47
48472978 TGTCTTCGAC
** * *
48472988 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
*
48473038 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
*
48473084 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
48473110 CTGTCCTGAC
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
46 35 0.53
50 31 0.47
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:48480643 original size:43 final size:42
Alignment explanation
Indices: 48480593--48480711 Score: 129
Period size: 43 Copynumber: 2.8 Consensus size: 42
48480583 ATATGTGTTC
48480593 TCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT-ATGTGAT
1 TCGTGTAAGACCACGTCTGGGACGTTGGCATCGATAAT-TGAT
* * * *
48480635 TACGTGTAAGACCATGTCTAGGACATCGGCATCG-TAATTGAT
1 T-CGTGTAAGACCACGTCTGGGACGTTGGCATCGATAATTGAT
*
48480677 TTGTGTAAGACC-CTGTCTGGGACAG-TGGCATCGAT
1 TCGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGAT
48480712 TTATCGATAT
Statistics
Matches: 63, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
41 25 0.40
42 8 0.13
43 30 0.48
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.29
Consensus pattern (42 bp):
TCGTGTAAGACCACGTCTGGGACGTTGGCATCGATAATTGAT
Found at i:48491188 original size:48 final size:48
Alignment explanation
Indices: 48491113--48491258 Score: 211
Period size: 48 Copynumber: 3.0 Consensus size: 48
48491103 TGTTACATGT
*
48491113 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGTTATGA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGA
* * * *
48491161 GATTCCATGTAAGACCATGTCTGGGACATGGCATTGGTATCGACATGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGA
* * * *
48491209 GATCCCATGTAAGACCATATCAGGGATATGGTATTGGCATCGATATGA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGA
48491257 GA
1 GA
48491259 CATCATGAAA
Statistics
Matches: 85, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 85 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (48 bp):
GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGA
Found at i:48491271 original size:48 final size:47
Alignment explanation
Indices: 48491118--48491275 Score: 181
Period size: 48 Copynumber: 3.3 Consensus size: 47
48491108 CATGTGATCC
* * *
48491118 CATGTAAGACCATGTCTGGGACATGGCATTGGCATCGTTATGAGATT
1 CATGTAAGACCATATCTGGGACATGGCATTGGCATCGATATGAGACT
* * * * *
48491165 CCATGTAAGACCATGTCTGGGACATGGCATTGGTATCGACATGTGATCC
1 -CATGTAAGACCATATCTGGGACATGGCATTGGCATCGATATGAGA-CT
* * *
48491214 CATGTAAGACCATATCAGGGATATGGTATTGGCATCGATATGAGACAT
1 CATGTAAGACCATATCTGGGACATGGCATTGGCATCGATATGAGAC-T
*
48491262 CATGAAAGACCATA
1 CATGTAAGACCATA
48491276 GCTAGGCTAT
Statistics
Matches: 93, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
47 1 0.01
48 92 0.99
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (47 bp):
CATGTAAGACCATATCTGGGACATGGCATTGGCATCGATATGAGACT
Found at i:48507330 original size:24 final size:24
Alignment explanation
Indices: 48507296--48507372 Score: 109
Period size: 24 Copynumber: 3.2 Consensus size: 24
48507286 AAAGACTGTC
48507296 AGGAGAAGATTTAGGAGCTAATAA
1 AGGAGAAGATTTAGGAGCTAATAA
* * *
48507320 GGGAGAGGATTTAGGAGCTGATAA
1 AGGAGAAGATTTAGGAGCTAATAA
* *
48507344 AGGAGAAGATTTAGGAGCTGATCA
1 AGGAGAAGATTTAGGAGCTAATAA
48507368 AGGAG
1 AGGAG
48507373 CAGGAGTTGG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.39, C:0.05, G:0.36, T:0.19
Consensus pattern (24 bp):
AGGAGAAGATTTAGGAGCTAATAA
Found at i:48509068 original size:33 final size:34
Alignment explanation
Indices: 48508991--48509071 Score: 85
Period size: 33 Copynumber: 2.4 Consensus size: 34
48508981 TATGGGCCGT
*
48508991 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTT
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTC
* * ** *
48509025 AATGTAATCTGAA-AA-GGGCTGTGGCGCAGTATC
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGT-TC
48509058 ACTGTTATCTGAAT
1 ACTGTTATCTGAAT
48509072 GGGCTTAGGC
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
32 12 0.32
33 14 0.38
34 11 0.30
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (34 bp):
ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTC
Found at i:48516930 original size:47 final size:47
Alignment explanation
Indices: 48516864--48517244 Score: 613
Period size: 47 Copynumber: 8.1 Consensus size: 47
48516854 GAAATGATAG
48516864 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
48516911 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* *
48516960 TAAGGCCTAATGGCCGATATGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
48517007 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
48517054 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
48517101 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
48517148 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
** * * * * * *
48517195 -CGGGCCGAGTGGCCAACGTGATTG-ATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGA-TGAATGTGAAAGTGTATATATGTGA
48517241 TAAG
1 TAAG
48517245 TCCCGAAGGG
Statistics
Matches: 312, Mismatches: 18, Indels: 8
0.92 0.05 0.02
Matches are distributed among these distances:
46 35 0.11
47 231 0.74
49 46 0.15
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Done.