Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 154 of 316
Found at i:48807620 original size:25 final size:22
Alignment explanation
Indices: 48807563--48807633 Score: 115
Period size: 22 Copynumber: 3.2 Consensus size: 22
48807553 CACCTAACAA
48807563 CCACCGAACCACCATCATACAT
1 CCACCGAACCACCATCATACAT
48807585 CCACCGAACCACCATCATACAT
1 CCACCGAACCACCATCATACAT
* * *
48807607 CCACTGAACCACCACCATACAA
1 CCACCGAACCACCATCATACAT
48807629 CCACC
1 CCACC
48807634 ACTCCACTAC
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 45 1.00
ACGTcount: A:0.37, C:0.48, G:0.04, T:0.11
Consensus pattern (22 bp):
CCACCGAACCACCATCATACAT
Found at i:48807655 original size:44 final size:44
Alignment explanation
Indices: 48807550--48807656 Score: 110
Period size: 44 Copynumber: 2.4 Consensus size: 44
48807540 CAAACCAAAT
* * *
48807550 CACCACC-TAACAACCACCGAACCACCATCATACATCCACCGAAC
1 CACCACCAT-ACAACCACTGAACCACCACCATACAACCACCGAAC
* * *
48807594 CACCATCATACATCCACTGAACCACCACCATACAACCACC-ACTC
1 CACCACCATACAACCACTGAACCACCACCATACAACCACCGA-AC
* *
48807638 CACTACCATTCAACCACTG
1 CACCACCATACAACCACTG
48807657 TAGCAGCACC
Statistics
Matches: 51, Mismatches: 10, Indels: 4
0.78 0.15 0.06
Matches are distributed among these distances:
43 1 0.02
44 49 0.96
45 1 0.02
ACGTcount: A:0.36, C:0.47, G:0.04, T:0.13
Consensus pattern (44 bp):
CACCACCATACAACCACTGAACCACCACCATACAACCACCGAAC
Found at i:48809997 original size:5 final size:5
Alignment explanation
Indices: 48809989--48810019 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
48809979 AATCTATTCT
48809989 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG A
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG A
48810020 GAAAACCTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:48815946 original size:24 final size:25
Alignment explanation
Indices: 48815912--48815968 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
48815902 AAGCAAATAC
*
48815912 ATTCAAATTTG-ACCTCATATGAA-CA
1 ATTC-AATTTGCACC-CAAATGAACCA
*
48815937 ATTCAATTTGCAGCCAAATGAACCA
1 ATTCAATTTGCACCCAAATGAACCA
48815962 ATTCAAT
1 ATTCAAT
48815969 ACACAAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 13 0.46
25 15 0.54
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (25 bp):
ATTCAATTTGCACCCAAATGAACCA
Found at i:48837066 original size:47 final size:47
Alignment explanation
Indices: 48837015--48837331 Score: 492
Period size: 47 Copynumber: 6.7 Consensus size: 47
48837005 TTAGGATTCT
* * *
48837015 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
48837062 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
48837109 ATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
48837156 ATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
48837203 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
48837250 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
48837297 ACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
48837332 TCCCGAAGGG
Statistics
Matches: 253, Mismatches: 16, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
46 1 0.00
47 252 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:48837506 original size:37 final size:37
Alignment explanation
Indices: 48837450--48837528 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
48837440 CCGAGCTCTA
* *
48837450 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
48837487 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
48837524 AAGAC
1 AAGAC
48837529 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:48838769 original size:43 final size:43
Alignment explanation
Indices: 48838721--48838866 Score: 283
Period size: 43 Copynumber: 3.4 Consensus size: 43
48838711 TTGGTTTTCA
48838721 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
48838764 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
*
48838807 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
48838850 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
48838867 TTGAAATGCA
Statistics
Matches: 102, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
43 102 1.00
ACGTcount: A:0.23, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:48838919 original size:28 final size:29
Alignment explanation
Indices: 48838848--48838920 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
48838838 GTTGCGAGAT
* *
48838848 TGGCACTAAGTGTGCGGGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATACA
*
48838877 TGGCACTAAGTGTGCGAG-TTTAAAGTACA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TACA
48838906 T-GCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
48838921 TGGTTGATTA
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
28 19 0.47
29 21 0.52
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATACA
Found at i:48839353 original size:40 final size:40
Alignment explanation
Indices: 48839309--48839465 Score: 233
Period size: 40 Copynumber: 3.9 Consensus size: 40
48839299 GAGTTACTAA
*
48839309 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
48839349 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
** * *
48839389 ATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * *
48839429 ATCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
48839466 CGTGTATTCG
Statistics
Matches: 105, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 105 1.00
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:48839445 original size:120 final size:120
Alignment explanation
Indices: 48839230--48839460 Score: 279
Period size: 120 Copynumber: 1.9 Consensus size: 120
48839220 TCGAATGATG
** *
48839230 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCAAAGGCATTG
1 TCCGGGCTAAGTCCCGAAGGCTTCATGCTAAGTGACCATATCCGGACTAAGATCCAAAGGCATTC
* * *
48839295 GTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
66 GTGCGAGTGACTAAATCCGGGCTAAATCCCGAAGAGCAATCATGCTAGCGATGTA
** * * * *
48839350 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TGTATCCGGGCTAAGTTTCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAG-GC-TTCATGCTAAGTGACCATATCCGGACTAAGATCCAAAG-GCA
* * *
48839413 TTCGTGCTAGTGA-TATATCCGTGCTAAATCCCGAAGAGCAATCATGCT
63 TTCGTGCGAGTGACTAAATCCGGGCTAAATCCCGAAGAGCAATCATGCT
48839461 GGTGACGTGT
Statistics
Matches: 93, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
120 67 0.72
121 20 0.22
122 6 0.06
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCTTCATGCTAAGTGACCATATCCGGACTAAGATCCAAAGGCATTC
GTGCGAGTGACTAAATCCGGGCTAAATCCCGAAGAGCAATCATGCTAGCGATGTA
Found at i:48843726 original size:47 final size:47
Alignment explanation
Indices: 48843675--48844038 Score: 550
Period size: 47 Copynumber: 7.7 Consensus size: 47
48843665 TTAGGATTCT
* * *
48843675 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
* *
48843722 ATGTGATGAATGTGAAAGTGTATATATGTGATATGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
48843769 ATGTGACGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
48843816 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
48843863 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
48843910 ATGTGATGAATGTGAAAGTGTACATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
48843957 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
48844004 ACGTGATGGATGTGAAAGTGCATAAATGGGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
48844039 TCCCGAAGGG
Statistics
Matches: 291, Mismatches: 25, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
46 1 0.00
47 290 1.00
ACGTcount: A:0.32, C:0.10, G:0.31, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:48843916 original size:22 final size:22
Alignment explanation
Indices: 48843888--48843963 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
48843878 AAGTGTATAT
48843888 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* *** * **
48843910 ATGTGATGAATGTGAAAGTGTACAT
1 ATGTGAT-AAGGCCTAA-TG-GCCG
48843935 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
48843957 ATGTGAT
1 ATGTGAT
48843964 GAATGTGAAA
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 15 0.41
23 7 0.19
24 7 0.19
25 8 0.22
ACGTcount: A:0.30, C:0.12, G:0.30, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:48844213 original size:37 final size:37
Alignment explanation
Indices: 48844157--48844236 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
48844147 CCGAGCTCTA
* * *
48844157 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACTCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
48844194 AAGACTCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACTCGATAACTACGTGTGGAGATTATGTCCGGGT
48844231 AAGACT
1 AAGACT
48844237 TCGTAATAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (37 bp):
AAGACTCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:48845981 original size:26 final size:26
Alignment explanation
Indices: 48845952--48846001 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
48845942 GAAAATTATT
48845952 AAAATTTATG-GAATGAATTGGATAAG
1 AAAATTTATGAG-ATGAATTGGATAAG
*
48845978 AAAATTTATGAGATGAATTTGATA
1 AAAATTTATGAGATGAATTGGATA
48846002 TTTGAAATGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.46, C:0.00, G:0.20, T:0.34
Consensus pattern (26 bp):
AAAATTTATGAGATGAATTGGATAAG
Found at i:48848492 original size:44 final size:42
Alignment explanation
Indices: 48848442--48848600 Score: 180
Period size: 43 Copynumber: 3.7 Consensus size: 42
48848432 TATGTGTTCT
*
48848442 CGTGTAAGACCATGTCTGGGATGTTGGCATCGACTTATGATTTA
1 CGTGTAAGACCATGTCTGGGACGTTGGCATCGA-TT-TGATTTA
48848486 CGTGTAAGACCATGTCTGGGACGTTGGCATCGTATTTGATTT-
1 CGTGTAAGACCATGTCTGGGACGTTGGCATCG-ATTTGATTTA
* * * *
48848528 CGTGTAAGACCCTATCTGGGAAAG-TGACATCGATATTTGA-TTA
1 CGTGTAAGACCATGTCTGGG-ACGTTGGCATCG--ATTTGATTTA
* *
48848571 CATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGTGTAAGACCATGTCTGGGACGTTGGCAT
48848601 TTTATGAGCT
Statistics
Matches: 99, Mismatches: 11, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
42 29 0.29
43 36 0.36
44 33 0.33
45 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTGGGACGTTGGCATCGATTTGATTTA
Found at i:48856053 original size:43 final size:43
Alignment explanation
Indices: 48855897--48856054 Score: 173
Period size: 43 Copynumber: 3.7 Consensus size: 43
48855887 ATGTGTTCTA
*
48855897 GTGTAAGACCACGTCTGGGACGTTGGCATC-A-ACTTATGATTTAC
1 GTGTAAGACCACGTCTAGGACGTTGGCATCGATA-TT-TGA-TTAC
* * * *
48855941 GTTTAAGACCACGTCTAGAACATTGGCATCG-TATTTGATTTC
1 GTGTAAGACCACGTCTAGGACGTTGGCATCGATATTTGATTAC
48855983 GTGTAAGACC-CTGTCTAGGACAG-TGGCATCGATATTTGATTAC
1 GTGTAAGACCAC-GTCTAGGAC-GTTGGCATCGATATTTGATTAC
* *
48856026 ATGTAAGACCACGTCTGGGACGTTGGCAT
1 GTGTAAGACCACGTCTAGGACGTTGGCAT
48856055 TGTATGAGCT
Statistics
Matches: 96, Mismatches: 11, Indels: 15
0.79 0.09 0.12
Matches are distributed among these distances:
41 1 0.01
42 29 0.30
43 36 0.38
44 29 0.30
45 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (43 bp):
GTGTAAGACCACGTCTAGGACGTTGGCATCGATATTTGATTAC
Found at i:48865891 original size:43 final size:43
Alignment explanation
Indices: 48865708--48865891 Score: 235
Period size: 43 Copynumber: 4.3 Consensus size: 43
48865698 GCTATAGATG
* * * *
48865708 ACGCCGCTAAAGGTCATGACCTTTAGCGGCGCGTTACCCATAA
1 ACGCCACTAAAGATCATGACCTTTAGCGGCGCTTTACCCAAAA
* * * *
48865751 ACGCCGCTAAATG-TGATGACCTTTAGCGACGCTTTACCCACAA
1 ACGCCACTAAA-GATCATGACCTTTAGCGGCGCTTTACCCAAAA
* * *
48865794 ACGCCACTAAATATCATAACCTTTAGCGGCGCTTTACCCAGAA
1 ACGCCACTAAAGATCATGACCTTTAGCGGCGCTTTACCCAAAA
48865837 ACGCCACTAAAGATCATGACCTTTAGCGGCGCTTTACCCAAAA
1 ACGCCACTAAAGATCATGACCTTTAGCGGCGCTTTACCCAAAA
* *
48865880 AAGTCACTAAAG
1 ACGCCACTAAAG
48865892 GTAATGAAAT
Statistics
Matches: 124, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
43 123 0.99
44 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (43 bp):
ACGCCACTAAAGATCATGACCTTTAGCGGCGCTTTACCCAAAA
Found at i:48866091 original size:19 final size:21
Alignment explanation
Indices: 48866050--48866097 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
48866040 TTAAAATTTT
48866050 AACTAAAAATATTAAAATAAA
1 AACTAAAAATATTAAAATAAA
* *
48866071 AA-TAAAAAT-TTAGAATCAA
1 AACTAAAAATATTAAAATAAA
48866090 AACTAAAA
1 AACTAAAA
48866098 TAAATAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 10 0.42
20 12 0.50
21 2 0.08
ACGTcount: A:0.69, C:0.06, G:0.02, T:0.23
Consensus pattern (21 bp):
AACTAAAAATATTAAAATAAA
Found at i:48867968 original size:24 final size:24
Alignment explanation
Indices: 48867936--48867984 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
48867926 ATATACAAAG
48867936 AAATAGCAAGTTCTACCTTCTAAA
1 AAATAGCAAGTTCTACCTTCTAAA
48867960 AAATAGCAAGTTCTACCTTCTAAA
1 AAATAGCAAGTTCTACCTTCTAAA
48867984 A
1 A
48867985 CAGGACTAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.29
Consensus pattern (24 bp):
AAATAGCAAGTTCTACCTTCTAAA
Found at i:48871395 original size:14 final size:14
Alignment explanation
Indices: 48871376--48871402 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
48871366 GGATTATAGG
48871376 AAGAATAAAAATGA
1 AAGAATAAAAATGA
48871390 AAGAATAAAAATG
1 AAGAATAAAAATG
48871403 TCACCAGCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.70, C:0.00, G:0.15, T:0.15
Consensus pattern (14 bp):
AAGAATAAAAATGA
Found at i:48873744 original size:15 final size:14
Alignment explanation
Indices: 48873706--48873744 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
48873696 AATTAATCTA
*
48873706 AACCCCAAACCCTT
1 AACCTCAAACCCTT
48873720 AACCTCAAACCCTT
1 AACCTCAAACCCTT
*
48873734 ACACCTTAAAC
1 A-ACCTCAAAC
48873745 TCTAACTCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 14 0.64
15 8 0.36
ACGTcount: A:0.38, C:0.44, G:0.00, T:0.18
Consensus pattern (14 bp):
AACCTCAAACCCTT
Found at i:48873840 original size:14 final size:14
Alignment explanation
Indices: 48873823--48873913 Score: 56
Period size: 14 Copynumber: 6.0 Consensus size: 14
48873813 CTAGTTAACT
48873823 CCTAAACCTTAAAC
1 CCTAAACCTTAAAC
* * *
48873837 CCTAAACCATATAT
1 CCTAAACCTTAAAC
* *
48873851 CTTAAACCATAGTTAAC
1 CCTAAACC-T--TAAAC
*
48873868 TCATAAACCTTAAAC
1 -CCTAAACCTTAAAC
48873883 CCTAAACCATCTTAAAC
1 CCTAAA-C--CTTAAAC
*
48873900 CATAAACCTTAAAC
1 CCTAAACCTTAAAC
48873914 TATAATGATA
Statistics
Matches: 58, Mismatches: 12, Indels: 14
0.69 0.14 0.17
Matches are distributed among these distances:
14 30 0.52
15 5 0.09
16 1 0.02
17 15 0.26
18 7 0.12
ACGTcount: A:0.44, C:0.30, G:0.01, T:0.25
Consensus pattern (14 bp):
CCTAAACCTTAAAC
Found at i:48874119 original size:41 final size:41
Alignment explanation
Indices: 48874072--48874277 Score: 215
Period size: 41 Copynumber: 5.1 Consensus size: 41
48874062 GTTATATGAC
* * *
48874072 TTTTAGCGGTGTTTTACCAAAAGCACCGCTAATGCTCTGGG
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* * *
48874113 TTTTAGCGACGTTTTACCAAAAGTGCCGCTAATACTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* *
48874154 TTTTAGCGGCGTTTTA-CTAAAGCGCCTCT-ATGCTCT-GT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* * *
48874192 TTTTAGCGGCGTTTTTTACTAAAA-CGCCGCTATTTCTCT-GT
1 TTTTAGCGGCG--TTTTACCAAAAGCGCCGCTAATGCTCTGGT
* * * *
48874233 TTTTAGCGGAGTTTTACCAAAAACACCGCTATTGCTCTGTGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTG-GT
48874275 TTT
1 TTT
48874278 ACAATTTTTG
Statistics
Matches: 138, Mismatches: 20, Indels: 13
0.81 0.12 0.08
Matches are distributed among these distances:
38 13 0.09
39 16 0.12
40 34 0.25
41 70 0.51
42 5 0.04
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.38
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
Found at i:48874231 original size:80 final size:80
Alignment explanation
Indices: 48874072--48874278 Score: 222
Period size: 79 Copynumber: 2.6 Consensus size: 80
48874062 GTTATATGAC
* *
48874072 TTTTAGCGGTGTTTTACCAAAAGCACCGCTAATGCTCTGGGTTTTAGCGACGTTTTACCAAAAGT
1 TTTTAGCGGAGTTTTA-CAAAAGCACCGCTAATGCTCTGGGTTTTAGCGACGTTTTACCAAAAGC
48874137 GCCGCTAATACTCTGGT
65 GCCGCTAATACTCT-GT
* * * * * * *
48874154 TTTTAGCGGCGTTTTACTAAAGCGCCTCT-ATGCTCT-GTTTTTAGCGGCGTTTTTTACTAAAA-
1 TTTTAGCGGAGTTTTACAAAAGCACCGCTAATGCTCTGGGTTTTAGCGACG--TTTTACCAAAAG
* *
48874216 CGCCGCTATTTCTCTGT
64 CGCCGCTAATACTCTGT
* * *
48874233 TTTTAGCGGAGTTTTACCAAAAACACCGCTATTGCTCTGTGTTTTA
1 TTTTAGCGGAGTTTTA-CAAAAGCACCGCTAATGCTCTGGGTTTTA
48874279 CAATTTTTGC
Statistics
Matches: 102, Mismatches: 18, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
79 28 0.27
80 28 0.27
81 26 0.25
82 20 0.20
ACGTcount: A:0.21, C:0.22, G:0.20, T:0.38
Consensus pattern (80 bp):
TTTTAGCGGAGTTTTACAAAAGCACCGCTAATGCTCTGGGTTTTAGCGACGTTTTACCAAAAGCG
CCGCTAATACTCTGT
Found at i:48881508 original size:21 final size:20
Alignment explanation
Indices: 48881484--48881559 Score: 62
Period size: 21 Copynumber: 3.5 Consensus size: 20
48881474 CTAGGAATTA
48881484 TGTGATCTGAACTCATGGAGT
1 TGTGATCTGAACTCAT-GAGT
** *
48881505 TGTGATCTGAGTTCATGATAT
1 TGTGATCTGAACTCATGA-GT
48881526 ATGTGACATCTGAACTCATTGAGT
1 -TGTG--ATCTGAACTCA-TGAGT
*
48881550 TGTGGTCTGA
1 TGTGATCTGA
48881560 GTTCATGATG
Statistics
Matches: 43, Mismatches: 7, Indels: 10
0.72 0.12 0.17
Matches are distributed among these distances:
20 2 0.05
21 20 0.47
22 4 0.09
23 4 0.09
24 10 0.23
25 3 0.07
ACGTcount: A:0.24, C:0.13, G:0.26, T:0.37
Consensus pattern (20 bp):
TGTGATCTGAACTCATGAGT
Found at i:48881544 original size:45 final size:45
Alignment explanation
Indices: 48881488--48881578 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
48881478 GAATTATGTG
*
48881488 ATCTGAACTCATGGAGTTGTGATCTGAGTTCATGATATATGTGAC
1 ATCTGAACTCATGGAGTTGTGATCTGAGTTCATGATATATATGAC
* * *
48881533 ATCTGAACTCATTGAGTTGTGGTCTGAGTTCATGATGTATATGAC
1 ATCTGAACTCATGGAGTTGTGATCTGAGTTCATGATATATATGAC
48881578 A
1 A
48881579 CATGTTTTGG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.26, C:0.13, G:0.24, T:0.36
Consensus pattern (45 bp):
ATCTGAACTCATGGAGTTGTGATCTGAGTTCATGATATATATGAC
Found at i:48882001 original size:43 final size:43
Alignment explanation
Indices: 48881940--48882026 Score: 156
Period size: 43 Copynumber: 2.0 Consensus size: 43
48881930 AACTCATGAG
*
48881940 AATGACATGAGATATGATGAACTTGTGGTAAGAATAAGAATAT
1 AATGACATGAGATATGATGAACTAGTGGTAAGAATAAGAATAT
*
48881983 AATGATATGAGATATGATGAACTAGTGGTAAGAATAAGAATAT
1 AATGACATGAGATATGATGAACTAGTGGTAAGAATAAGAATAT
48882026 A
1 A
48882027 TATATATATG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.46, C:0.03, G:0.23, T:0.28
Consensus pattern (43 bp):
AATGACATGAGATATGATGAACTAGTGGTAAGAATAAGAATAT
Found at i:48900392 original size:48 final size:48
Alignment explanation
Indices: 48900321--48900608 Score: 526
Period size: 48 Copynumber: 6.0 Consensus size: 48
48900311 CAAGATAAAT
* *
48900321 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
48900369 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
48900417 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
48900465 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA--TATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
48900511 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
48900559 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
48900607 AT
1 AT
48900609 GTGTGTATAT
Statistics
Matches: 233, Mismatches: 5, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
46 45 0.19
48 188 0.81
ACGTcount: A:0.34, C:0.06, G:0.29, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:48900535 original size:142 final size:143
Alignment explanation
Indices: 48900321--48900608 Score: 524
Period size: 142 Copynumber: 2.0 Consensus size: 143
48900311 CAAGATAAAT
* *
48900321 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATA-GTATGAGATATGTATATGTGGTAA
48900386 AGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGT
65 AGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGT
*
48900451 GAAATATGTATGAG
130 GAAATATGTAGGAG
*
48900465 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA-TATGAGATATGTATATGTGGTAAA
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATAGTATGAGATATGTATATGTGGTAAA
48900529 GCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
66 GCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
48900594 AAATATGTAGGAG
131 AAATATGTAGGAG
48900607 AT
1 AT
48900609 GTGTGTATAT
Statistics
Matches: 140, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
142 103 0.74
144 37 0.26
ACGTcount: A:0.34, C:0.06, G:0.29, T:0.31
Consensus pattern (143 bp):
ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATAGTATGAGATATGTATATGTGGTAAA
GCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
AAATATGTAGGAG
Found at i:48900572 original size:94 final size:94
Alignment explanation
Indices: 48900321--48900599 Score: 513
Period size: 94 Copynumber: 2.9 Consensus size: 94
48900311 CAAGATAAAT
* *
48900321 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
48900386 AGCCGAATGGCTAGTGTGAAATATGTATGAG
66 AGCCGAATGGCTAGTGTGAAATA--TATGAG
48900417 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
*
48900482 AGCCGAATGGCTAATGTGAAATATATGAG
66 AGCCGAATGGCTAGTGTGAAATATATGAG
48900511 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
48900576 AGCCGAATGGCTAGTGTGAAATAT
66 AGCCGAATGGCTAGTGTGAAATAT
48900600 GTAGGAGATG
Statistics
Matches: 179, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
94 94 0.53
96 85 0.47
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.31
Consensus pattern (94 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
AGCCGAATGGCTAGTGTGAAATATATGAG
Found at i:48900804 original size:37 final size:37
Alignment explanation
Indices: 48900749--48900851 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
48900739 GGAAATATAT
48900749 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
48900786 TCCGGGTAAGACCTGATGACTATGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
48900823 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
48900852 GGACTATTCG
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:48905883 original size:99 final size:95
Alignment explanation
Indices: 48905760--48905982 Score: 256
Period size: 99 Copynumber: 2.3 Consensus size: 95
48905750 CATCAAGTCA
*
48905760 ATGCCATGTCCCAGACATGGTCTTACACTG-ACTATCAAAATCGAGCCCGACGCCATGTCCTAAA
1 ATGCCATGTCCCAGACATGGTCTTACACTGCAC-ATCAAAA-CGAG-CCGACGCCATGTCCCAAA
*
48905824 CATGGTCTTACACTAGCTCTCA-CATATCCGTGCCG
63 CATGGTCTTACACTAGCTCTCATAATAT--G-GCCG
* * * * * *
48905859 ATGCCATGTCCCAGACATGGTCTTACACTGTCACCTCTATACGTGCCGATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTG-CACATCAAAACGAGCCGACGCCATGTCCCAAACA
* *
48905924 TGGTCTTACATTGGCTCTCATAATATGGCCG
65 TGGTCTTACACTAGCTCTCATAATATGGCCG
*
48905955 ATG-CATGTCCTAGACAT-GTCTTACACTG
1 ATGCCATGTCCCAGACATGGTCTTACACTG
48905983 GCGCACAAAT
Statistics
Matches: 110, Mismatches: 11, Indels: 11
0.83 0.08 0.08
Matches are distributed among these distances:
94 11 0.10
95 13 0.12
96 7 0.06
97 1 0.01
98 35 0.32
99 37 0.34
100 4 0.04
101 2 0.02
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.27
Consensus pattern (95 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGCACATCAAAACGAGCCGACGCCATGTCCCAAACAT
GGTCTTACACTAGCTCTCATAATATGGCCG
Found at i:48905919 original size:48 final size:48
Alignment explanation
Indices: 48905710--48905984 Score: 224
Period size: 48 Copynumber: 5.7 Consensus size: 48
48905700 GGGTATAATA
* * * * *
48905710 CCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCATCCATCAAGT-
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACCTCTAT-ACGTG
* * * * *
48905758 -CAATGCCATGTCCCAGACATGGTCTTACACT-G-ACTATCAAAATCGAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCAC-CTCTATA-CGTG
* * * * * * *
48905805 CCCGACGCCATGTCCTAAACATGGTCTTACACTAGCTCTCACATATCCGTG
1 -CCGATGCCATGTCCCAGACATGGTCTTACACTGGCAC-CTC-TATACGTG
*
48905856 CCGATGCCATGTCCCAGACATGGTCTTACACTGTCACCTCTATACGTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACCTCTATACGTG
* * *
48905904 CCGATGCCATGTCCCAGACATGGTCTTACATTGGC-TCTCATAATATG-G
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACCTC-T-ATACGTG
*
48905952 CCGATG-CATGTCCTAGACAT-GTCTTACACTGGC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGC
48905985 GCACAAATAA
Statistics
Matches: 185, Mismatches: 32, Indels: 22
0.77 0.13 0.09
Matches are distributed among these distances:
45 2 0.01
46 18 0.10
47 45 0.24
48 48 0.26
49 33 0.18
50 32 0.17
51 6 0.03
52 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.27
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACCTCTATACGTG
Found at i:48919006 original size:26 final size:26
Alignment explanation
Indices: 48918951--48919006 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
48918941 CAACCTTAAC
* *
48918951 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTGCA
*
48918977 CCTAGGGGTAAATCTGTAAATTTT-CA
1 CCTAGGGGTAAATCAGT-AATTTTGCA
48919003 CCTA
1 CCTA
48919007 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 20 0.77
27 6 0.23
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.36
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTGCA
Found at i:48926638 original size:43 final size:44
Alignment explanation
Indices: 48926548--48926671 Score: 144
Period size: 43 Copynumber: 2.9 Consensus size: 44
48926538 TCACTTATCG
* * * * * * *
48926548 ATGCCACTGCCCCAGATAGGGTCTTACACGAAATCA-TATAACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATAACA
48926591 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAAT-ACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATAACA
* * *
48926634 ATGCCAATGTCCCAGACATAGTCTTACATGTAACCACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA
48926672 TCTCGGTAAC
Statistics
Matches: 70, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
43 68 0.97
44 2 0.03
ACGTcount: A:0.34, C:0.28, G:0.15, T:0.23
Consensus pattern (44 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATAACA
Found at i:48938286 original size:3 final size:3
Alignment explanation
Indices: 48938278--48938318 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
48938268 GTTCCAACTT
48938278 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
48938319 TTAGGTTAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:48939760 original size:43 final size:43
Alignment explanation
Indices: 48939699--48939786 Score: 167
Period size: 43 Copynumber: 2.0 Consensus size: 43
48939689 TAAGGAGCAT
*
48939699 TACCAGACAGACAGAACATTATAGAATTACAAATATCACATAG
1 TACCAGACAGACAAAACATTATAGAATTACAAATATCACATAG
48939742 TACCAGACAGACAAAACATTATAGAATTACAAATATCACATAG
1 TACCAGACAGACAAAACATTATAGAATTACAAATATCACATAG
48939785 TA
1 TA
48939787 TTATCATATA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.50, C:0.18, G:0.10, T:0.22
Consensus pattern (43 bp):
TACCAGACAGACAAAACATTATAGAATTACAAATATCACATAG
Found at i:48939782 original size:22 final size:22
Alignment explanation
Indices: 48939714--48939782 Score: 52
Period size: 22 Copynumber: 3.2 Consensus size: 22
48939704 GACAGACAGA
48939714 ACATTATAGAATTACAAATATC
1 ACATTATAGAATTACAAATATC
** * * * **
48939736 ACA-TAGTACCA-GACAGACAAA
1 ACATTA-TAGAATTACAAATATC
48939757 ACATTATAGAATTACAAATATC
1 ACATTATAGAATTACAAATATC
48939779 ACAT
1 ACAT
48939783 AGTATTATCA
Statistics
Matches: 30, Mismatches: 14, Indels: 6
0.60 0.28 0.12
Matches are distributed among these distances:
21 13 0.43
22 17 0.57
ACGTcount: A:0.51, C:0.17, G:0.07, T:0.25
Consensus pattern (22 bp):
ACATTATAGAATTACAAATATC
Found at i:48942505 original size:39 final size:40
Alignment explanation
Indices: 48942410--48942671 Score: 319
Period size: 39 Copynumber: 6.7 Consensus size: 40
48942400 TTGAATGATG
*
48942410 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
48942448 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
*
48942489 TCCGGGCTAAG-CCCGAAGGCATTTGTACGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
48942528 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
48942567 TCCGGGCTAAG-CCCGAAGGCATTTGTGCTAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
48942606 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
48942645 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
48942672 AACGAGGAGC
Statistics
Matches: 199, Mismatches: 15, Indels: 17
0.86 0.06 0.07
Matches are distributed among these distances:
39 129 0.65
40 58 0.29
41 11 0.06
42 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:48949209 original size:40 final size:40
Alignment explanation
Indices: 48949156--48949232 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
48949146 CTTAGTACCA
* ** *
48949156 CATAAAGCCGAAGCTATTTCAATTTGCACACTAAGTGATG
1 CATAAAGCCGAAGCTATCTCAAAATACACACTAAGTGATG
* *
48949196 CATATAGCTGAAGCTATCTCAAAATACACACTAAGTG
1 CATAAAGCCGAAGCTATCTCAAAATACACACTAAGTG
48949233 CCAAACATAG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.26
Consensus pattern (40 bp):
CATAAAGCCGAAGCTATCTCAAAATACACACTAAGTGATG
Found at i:48951153 original size:59 final size:59
Alignment explanation
Indices: 48951081--48951200 Score: 240
Period size: 59 Copynumber: 2.0 Consensus size: 59
48951071 AAATTTAAGT
48951081 TAATTAGTAAGGGTAAATTGGTAATTAATCAAATAAATACAAACAAATAACTAAAATGC
1 TAATTAGTAAGGGTAAATTGGTAATTAATCAAATAAATACAAACAAATAACTAAAATGC
48951140 TAATTAGTAAGGGTAAATTGGTAATTAATCAAATAAATACAAACAAATAACTAAAATGC
1 TAATTAGTAAGGGTAAATTGGTAATTAATCAAATAAATACAAACAAATAACTAAAATGC
48951199 TA
1 TA
48951201 TCATCTTCTT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 61 1.00
ACGTcount: A:0.53, C:0.08, G:0.12, T:0.28
Consensus pattern (59 bp):
TAATTAGTAAGGGTAAATTGGTAATTAATCAAATAAATACAAACAAATAACTAAAATGC
Found at i:48952512 original size:12 final size:12
Alignment explanation
Indices: 48952495--48952520 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
48952485 TAAAGTCCTT
48952495 TATAGATACAGA
1 TATAGATACAGA
48952507 TATAGATACAGA
1 TATAGATACAGA
48952519 TA
1 TA
48952521 CAAATAACAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.15, T:0.27
Consensus pattern (12 bp):
TATAGATACAGA
Found at i:48964925 original size:25 final size:24
Alignment explanation
Indices: 48964881--48964931 Score: 66
Period size: 25 Copynumber: 2.1 Consensus size: 24
48964871 ATTTTGACGA
*
48964881 TATCCCACTAAATCACAACCCCCAT
1 TATCCCACTAAAACACAA-CCCCAT
**
48964906 TATCCCACTAAAACTTAACCCCAT
1 TATCCCACTAAAACACAACCCCAT
48964930 TA
1 TA
48964932 GAATTCTAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 8 0.35
25 15 0.65
ACGTcount: A:0.37, C:0.39, G:0.00, T:0.24
Consensus pattern (24 bp):
TATCCCACTAAAACACAACCCCAT
Found at i:48972093 original size:27 final size:27
Alignment explanation
Indices: 48972063--48972154 Score: 130
Period size: 27 Copynumber: 3.4 Consensus size: 27
48972053 ATTACCAAAG
* * *
48972063 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
48972090 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
48972117 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
48972144 TACCATCGATT
1 TACCCTCGATT
48972155 GTGAAATTAC
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTGTTT
Found at i:48972216 original size:27 final size:27
Alignment explanation
Indices: 48972186--48972285 Score: 139
Period size: 27 Copynumber: 3.7 Consensus size: 27
48972176 TATAGGGTAG
48972186 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
48972213 AATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
48972240 AATTATCAAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
48972267 AATTACCAAAATACCCCTA
1 AATTACCAAAATACCCCTA
48972286 ATTTACAAAA
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 3 0.05
27 55 0.89
28 4 0.06
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:48972225 original size:54 final size:53
Alignment explanation
Indices: 48972153--48972285 Score: 135
Period size: 54 Copynumber: 2.5 Consensus size: 53
48972143 TTACCATCGA
* ** *
48972153 TTGTGAAATTACTGAAATACCCCTATAGGGT-AGAATTACCAAAATACCC-CTAGT
1 TTGTAAAATTACCAAAATACCCCTAT-GGGTGA-AATTACCAAAATACCCTC-AAT
* * ** *
48972207 TTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTATCAAAATACCCTCAAT
1 TTGTAAAATTACCAAAATACCCCT-ATGGGTGAAATTACCAAAATACCCTCAAT
48972261 TTGTAAAATTACCAAAATACCCCTA
1 TTGTAAAATTACCAAAATACCCCTA
48972286 ATTTACAAAA
Statistics
Matches: 65, Mismatches: 11, Indels: 7
0.78 0.13 0.08
Matches are distributed among these distances:
54 62 0.95
55 3 0.05
ACGTcount: A:0.40, C:0.20, G:0.11, T:0.29
Consensus pattern (53 bp):
TTGTAAAATTACCAAAATACCCCTATGGGTGAAATTACCAAAATACCCTCAAT
Found at i:48972288 original size:27 final size:27
Alignment explanation
Indices: 48972186--48972298 Score: 138
Period size: 27 Copynumber: 4.2 Consensus size: 27
48972176 TATAGGGTAG
*
48972186 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAATTTGTAA
* ** *
48972213 AATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAATTTGTAA
*
48972240 AATTATCAAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AATTTGTAA
**
48972267 AATTACCAAAATACCCCTAATTTACAA
1 AATTACCAAAATACCCCTAATTTGTAA
48972294 AATTA
1 AATTA
48972299 TAGAAATACC
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 3 0.04
27 66 0.90
28 4 0.05
ACGTcount: A:0.43, C:0.20, G:0.06, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAATTTGTAA
Found at i:48972305 original size:27 final size:27
Alignment explanation
Indices: 48972239--48972364 Score: 89
Period size: 27 Copynumber: 4.6 Consensus size: 27
48972229 CTGGTTTGTG
* **
48972239 AAATTATCA-AAATACCCTCAATTTGTA
1 AAATTAT-AGAAATACCCTTAATTTACA
* *
48972266 AAATTACCA-AAATACCCCTAATTTACA
1 AAATTA-TAGAAATACCCTTAATTTACA
*
48972293 AAATTATAGAAATACCCTTGACTTT-CTAA
1 AAATTATAGAAATACCCTT-AATTTAC--A
* **
48972322 AAATTATAGAAATACCATTGGTTTACA
1 AAATTATAGAAATACCCTTAATTTACA
48972349 AAATTACT-GAAATACC
1 AAATTA-TAGAAATACC
48972365 TTTGGTTTGT
Statistics
Matches: 81, Mismatches: 11, Indels: 14
0.76 0.10 0.13
Matches are distributed among these distances:
26 1 0.01
27 52 0.64
28 8 0.10
29 20 0.25
ACGTcount: A:0.45, C:0.18, G:0.06, T:0.31
Consensus pattern (27 bp):
AAATTATAGAAATACCCTTAATTTACA
Found at i:48972369 original size:27 final size:27
Alignment explanation
Indices: 48972287--48972372 Score: 95
Period size: 27 Copynumber: 3.1 Consensus size: 27
48972277 ATACCCCTAA
* *
48972287 TTTACAAAATTATAGAAATACCCTTGAC
1 TTTACAAAATTATAGAAATACCATTG-G
48972315 TTT-CTAAAAATTATAGAAATACCATTGG
1 TTTAC--AAAATTATAGAAATACCATTGG
*
48972343 TTTACAAAATTACT-GAAATACCTTTGG
1 TTTACAAAATTA-TAGAAATACCATTGG
48972370 TTT
1 TTT
48972373 GTAGATTTAC
Statistics
Matches: 51, Mismatches: 3, Indels: 9
0.81 0.05 0.14
Matches are distributed among these distances:
27 23 0.45
28 7 0.14
29 21 0.41
ACGTcount: A:0.40, C:0.14, G:0.09, T:0.37
Consensus pattern (27 bp):
TTTACAAAATTATAGAAATACCATTGG
Found at i:48972456 original size:27 final size:27
Alignment explanation
Indices: 48972413--48972486 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
48972403 AAATGACTAA
*
48972413 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
48972440 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
* *
48972467 AATATCCCTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
48972487 TGACGAATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:48972490 original size:27 final size:27
Alignment explanation
Indices: 48972426--48972490 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
48972416 ACCCCTAATA
*
48972426 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
48972453 GGTAAAGTGACCGTAATA-TCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
48972480 GGTAAAATGAC
1 GGTAAAATGAC
48972491 GAATATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:48973348 original size:24 final size:25
Alignment explanation
Indices: 48973272--48973341 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
48973262 AGGAAGTGCT
* * *
48973272 AAAAGGG-TTATGGCCCAGTTTACCG
1 AAAAGGGCTT-TGCCCCAGTTTATCA
48973297 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
48973322 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
48973342 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 39 0.95
26 2 0.05
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:48973354 original size:24 final size:24
Alignment explanation
Indices: 48973297--48973368 Score: 76
Period size: 25 Copynumber: 3.0 Consensus size: 24
48973287 CAGTTTACCG
48973297 AAAAG-GGCTTTGCCCCAGTTTATC
1 AAAAGAGGCTTTGCCCCAG-TTATC
*
48973321 AAAA-AGGGCTTTGCCCCAGTTATT
1 AAAAGA-GGCTTTGCCCCAGTTATC
**
48973345 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAGAGGCTTTGCC-CCAGTTAT
48973369 ATGATAAAGC
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
24 19 0.46
25 22 0.54
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGAGGCTTTGCCCCAGTTATC
Found at i:48973610 original size:31 final size:31
Alignment explanation
Indices: 48973561--48973638 Score: 149
Period size: 31 Copynumber: 2.5 Consensus size: 31
48973551 CGCTTACAGT
48973561 AAAGGCTTCGG-CCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
48973591 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
48973622 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
48973639 ATCTGTCGAG
Statistics
Matches: 47, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
30 11 0.23
31 36 0.77
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:48980754 original size:46 final size:48
Alignment explanation
Indices: 48980698--48980814 Score: 166
Period size: 46 Copynumber: 2.5 Consensus size: 48
48980688 TGATATGTGT
* * *
48980698 GCTAGTGTAAGACATGTCTGGGACATGCATCGACATTGAGA-CGA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAACATTGAGATAGACAA
* *
48980744 GCTAGTGTAAGACATGTCTGGGACATGCATCAACCTTGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAACATTGAGATAGACAA
*
48980792 GCTAGTGTAAGACCTGTCTGGGA
1 GCTAGTGTAAGACATGTCTGGGA
48980815 TATCGCGTCA
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
46 39 0.62
47 1 0.02
48 23 0.37
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAACATTGAGATAGACAA
Found at i:48985168 original size:15 final size:15
Alignment explanation
Indices: 48985142--48985184 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
48985132 ATAGTCTCGA
48985142 ATCTTGGGATTTCTCT
1 ATCTT-GGATTTCTCT
*
48985158 ATCTTGGATTTCTTT
1 ATCTTGGATTTCTCT
*
48985173 A-CTTGGTTTTCT
1 ATCTTGGATTTCT
48985185 TGTTATCTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 10 0.40
15 10 0.40
16 5 0.20
ACGTcount: A:0.12, C:0.16, G:0.16, T:0.56
Consensus pattern (15 bp):
ATCTTGGATTTCTCT
Found at i:48990170 original size:29 final size:29
Alignment explanation
Indices: 48990107--48990219 Score: 129
Period size: 29 Copynumber: 3.9 Consensus size: 29
48990097 ATACATATGG
* * * **
48990107 CCCACTAGGCCC-AATCTCATTCACATGG
1 CCCATTAGGCCCAAATCACATTCATATAA
* *
48990135 CCTATTAGGCCCAAATCACATTCCTATAA
1 CCCATTAGGCCCAAATCACATTCATATAA
* **
48990164 CCCATTAAGCCCAAATCACATTCATATGG
1 CCCATTAGGCCCAAATCACATTCATATAA
48990193 CCCATTAGGCCCAAATCACATTCATAT
1 CCCATTAGGCCCAAATCACATTCATAT
48990220 TCATGCTTTC
Statistics
Matches: 71, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
28 10 0.14
29 61 0.86
ACGTcount: A:0.32, C:0.34, G:0.10, T:0.25
Consensus pattern (29 bp):
CCCATTAGGCCCAAATCACATTCATATAA
Found at i:48990454 original size:16 final size:16
Alignment explanation
Indices: 48990435--48990465 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
48990425 AAACTTTCAG
*
48990435 CTTTTTGGCATTTCGA
1 CTTTTCGGCATTTCGA
48990451 CTTTTCGGCATTTCG
1 CTTTTCGGCATTTCG
48990466 GGATTTGTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.23, G:0.19, T:0.48
Consensus pattern (16 bp):
CTTTTCGGCATTTCGA
Found at i:48992165 original size:49 final size:49
Alignment explanation
Indices: 48992093--48992192 Score: 155
Period size: 49 Copynumber: 2.0 Consensus size: 49
48992083 ACGATTGGGC
** **
48992093 ATTTTTCATACGACTCGACTCACCCCGAGGTGGAGCGTATCATTTAGGT
1 ATTTTTCATAAAACTCGACTCACCCCGAGGCAGAGCGTATCATTTAGGT
*
48992142 ATTTTTCATAAAACTCGACTCACCCCGAGGCAGAGCGTATCATTTGGGT
1 ATTTTTCATAAAACTCGACTCACCCCGAGGCAGAGCGTATCATTTAGGT
48992191 AT
1 AT
48992193 CAGAGCTACA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (49 bp):
ATTTTTCATAAAACTCGACTCACCCCGAGGCAGAGCGTATCATTTAGGT
Found at i:48992285 original size:12 final size:11
Alignment explanation
Indices: 48992268--48992364 Score: 72
Period size: 11 Copynumber: 8.6 Consensus size: 11
48992258 AGTAAGTTTC
48992268 AAAAAAATTTTG
1 AAAAAAA-TTTG
**
48992280 AAAAAAATTCA
1 AAAAAAATTTG
*
48992291 AAAAAAAGTTTC
1 AAAAAAA-TTTG
**
48992303 AAAAAAATACG
1 AAAAAAATTTG
*
48992314 AAAAAAA-TTC
1 AAAAAAATTTG
48992324 AAAAAAATGTT-
1 AAAAAAAT-TTG
*
48992335 AAAAAAATTCGG
1 AAAAAAATT-TG
*
48992347 GAAAAAATTTG
1 AAAAAAATTTG
48992358 AAAAAAA
1 AAAAAAA
48992365 AATTTGAACA
Statistics
Matches: 66, Mismatches: 14, Indels: 11
0.73 0.15 0.12
Matches are distributed among these distances:
10 8 0.12
11 32 0.48
12 26 0.39
ACGTcount: A:0.66, C:0.05, G:0.08, T:0.21
Consensus pattern (11 bp):
AAAAAAATTTG
Found at i:48992317 original size:34 final size:34
Alignment explanation
Indices: 48992261--48992365 Score: 124
Period size: 34 Copynumber: 3.1 Consensus size: 34
48992251 CTCATCAAGT
*
48992261 AAGTTTCAAAAAAATTTTGAAAAAAATTCAAAAAA
1 AAGTTTCAAAAAAA-TTCGAAAAAAATTCAAAAAA
*
48992296 AAGTTTCAAAAAAATACGAAAAAAATTCAAAAAA
1 AAGTTTCAAAAAAATTCGAAAAAAATTCAAAAAA
* * *
48992330 ATG-TT-AAAAAAATTCGGGAAAAAATTTGAAAAAA
1 AAGTTTCAAAAAAATTC--GAAAAAAATTCAAAAAA
48992364 AA
1 AA
48992366 ATTTGAACAT
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
32 9 0.15
33 2 0.03
34 36 0.59
35 14 0.23
ACGTcount: A:0.64, C:0.06, G:0.09, T:0.22
Consensus pattern (34 bp):
AAGTTTCAAAAAAATTCGAAAAAAATTCAAAAAA
Found at i:48992344 original size:21 final size:21
Alignment explanation
Indices: 48992280--48992331 Score: 68
Period size: 23 Copynumber: 2.4 Consensus size: 21
48992270 AAAAATTTTG
* *
48992280 AAAAAAATTCAAAAAAAAGTTTC
1 AAAAAAATACGAAAAAAA--TTC
48992303 AAAAAAATACGAAAAAAATTC
1 AAAAAAATACGAAAAAAATTC
48992324 AAAAAAAT
1 AAAAAAAT
48992332 GTTAAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
21 11 0.41
23 16 0.59
ACGTcount: A:0.71, C:0.08, G:0.04, T:0.17
Consensus pattern (21 bp):
AAAAAAATACGAAAAAAATTC
Found at i:48992364 original size:13 final size:13
Alignment explanation
Indices: 48992348--48992372 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
48992338 AAAATTCGGG
48992348 AAAAAATTTGAAA
1 AAAAAATTTGAAA
48992361 AAAAAATTTGAA
1 AAAAAATTTGAA
48992373 CATTGTTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (13 bp):
AAAAAATTTGAAA
Found at i:49005716 original size:18 final size:18
Alignment explanation
Indices: 49005693--49005727 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
49005683 ACCGGCCAGC
49005693 ATGGGCTAAATGGGCCCG
1 ATGGGCTAAATGGGCCCG
49005711 ATGGGCTAAATGGGCCC
1 ATGGGCTAAATGGGCCC
49005728 ATAATAGGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.23, C:0.23, G:0.37, T:0.17
Consensus pattern (18 bp):
ATGGGCTAAATGGGCCCG
Found at i:49005834 original size:29 final size:28
Alignment explanation
Indices: 49005793--49005872 Score: 99
Period size: 29 Copynumber: 2.8 Consensus size: 28
49005783 GACTGTAAAA
*
49005793 GTGATTGGGCCTACTGGGCCATAT-AGAT
1 GTGATTGGGCCTAATGGGCCATATGA-AT
49005821 GTGATTTGGGCCTAATGGGCCATATGAAT
1 GTGA-TTGGGCCTAATGGGCCATATGAAT
* * *
49005850 GAGATTGGGCCTAGTAGGCCATA
1 GTGATTGGGCCTAATGGGCCATA
49005873 AGCATGTATG
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
28 21 0.46
29 24 0.52
30 1 0.02
ACGTcount: A:0.24, C:0.16, G:0.33, T:0.28
Consensus pattern (28 bp):
GTGATTGGGCCTAATGGGCCATATGAAT
Found at i:49026375 original size:18 final size:18
Alignment explanation
Indices: 49026352--49026386 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
49026342 ACCGGCCAGC
49026352 ATGGGCTAAATGGGCCCG
1 ATGGGCTAAATGGGCCCG
49026370 ATGGGCTAAATGGGCCC
1 ATGGGCTAAATGGGCCC
49026387 ATAATAGGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.23, C:0.23, G:0.37, T:0.17
Consensus pattern (18 bp):
ATGGGCTAAATGGGCCCG
Found at i:49026494 original size:29 final size:28
Alignment explanation
Indices: 49026453--49026532 Score: 99
Period size: 29 Copynumber: 2.8 Consensus size: 28
49026443 GACTGTAAAA
*
49026453 GTGATTGGGCCTACTGGGCCATAT-AGAT
1 GTGATTGGGCCTAATGGGCCATATGA-AT
49026481 GTGATTTGGGCCTAATGGGCCATATGAAT
1 GTGA-TTGGGCCTAATGGGCCATATGAAT
* * *
49026510 GAGATTGGGCCTAGTAGGCCATA
1 GTGATTGGGCCTAATGGGCCATA
49026533 AGCATGTATG
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
28 21 0.46
29 24 0.52
30 1 0.02
ACGTcount: A:0.24, C:0.16, G:0.33, T:0.28
Consensus pattern (28 bp):
GTGATTGGGCCTAATGGGCCATATGAAT
Found at i:49030764 original size:29 final size:28
Alignment explanation
Indices: 49030731--49030825 Score: 111
Period size: 29 Copynumber: 3.3 Consensus size: 28
49030721 CACTAAGCCT
*
49030731 AATCATATTCATATGGCCCATTAGGCCCA
1 AATCACATT-ATATGGCCCATTAGGCCCA
* *
49030760 AATCACCTGTATATGGCTCATTAGGCCCA
1 AATCACAT-TATATGGCCCATTAGGCCCA
*
49030789 AATCACATTTATATGGCCCGTTAGGCCC-
1 AATCACA-TTATATGGCCCATTAGGCCCA
*
49030817 AGTCACATT
1 AATCACATT
49030826 CAAATTCATG
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
27 2 0.04
28 6 0.11
29 47 0.82
30 2 0.04
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.28
Consensus pattern (28 bp):
AATCACATTATATGGCCCATTAGGCCCA
Found at i:49031067 original size:16 final size:16
Alignment explanation
Indices: 49031048--49031083 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
49031038 AACTTTCAGT
49031048 TTTTCGACATTTCGGC
1 TTTTCGACATTTCGGC
* *
49031064 TTTTCGGCATTTCGTC
1 TTTTCGACATTTCGGC
49031080 TTTT
1 TTTT
49031084 GCTGATACAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.08, C:0.22, G:0.17, T:0.53
Consensus pattern (16 bp):
TTTTCGACATTTCGGC
Found at i:49032383 original size:16 final size:17
Alignment explanation
Indices: 49032351--49032389 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
49032341 ACAAAGAAAG
49032351 TTTGGGATTTCAGGATT
1 TTTGGGATTTCAGGATT
49032368 TTTGGG-TTTC-GAGATT
1 TTTGGGATTTCAG-GATT
49032384 TTTGGG
1 TTTGGG
49032390 GCGTTACAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 1 0.05
16 14 0.67
17 6 0.29
ACGTcount: A:0.13, C:0.05, G:0.33, T:0.49
Consensus pattern (17 bp):
TTTGGGATTTCAGGATT
Found at i:49035315 original size:28 final size:29
Alignment explanation
Indices: 49035284--49035387 Score: 124
Period size: 29 Copynumber: 3.7 Consensus size: 29
49035274 GGCCTACTAA
*
49035284 GCCC-AATCATATTCATATGGCCCATTAG
1 GCCCAAATCACATTCATATGGCCCATTAG
*
49035312 GCCCAAATCACCTGT-ATATGGCCCATTAG
1 GCCCAAATCACAT-TCATATGGCCCATTAG
* *
49035341 GCCCAAATCACATTTATATGGCCCGTTAG
1 GCCCAAATCACATTCATATGGCCCATTAG
* *
49035370 G-CCTAGTCACATTCATAT
1 GCCCAAATCACATTCATAT
49035388 TCATGCTCAC
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
28 19 0.29
29 46 0.70
30 1 0.02
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (29 bp):
GCCCAAATCACATTCATATGGCCCATTAG
Found at i:49035370 original size:58 final size:57
Alignment explanation
Indices: 49035264--49035372 Score: 146
Period size: 58 Copynumber: 1.9 Consensus size: 57
49035254 AATTTCACAT
* * *
49035264 ACCTGTATTTGGCCTACTAAGCCCAATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCACTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATC
* * * *
49035321 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATGGCCCGTTAGGCC
1 ACCTGTATATGGCCCACTAAGCCC-AATCACATTCATATGGCCCATTAGGCC
49035373 TAGTCACATT
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 20 0.45
58 24 0.55
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.28
Consensus pattern (57 bp):
ACCTGTATATGGCCCACTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:49035621 original size:16 final size:16
Alignment explanation
Indices: 49035597--49035639 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
49035587 GTAGCCAAAC
49035597 TTTCGGCTTTTCAGCA
1 TTTCGGCTTTTCAGCA
* *
49035613 TTTCAGCTTTTCGGCA
1 TTTCGGCTTTTCAGCA
49035629 TTTCGGCTTTT
1 TTTCGGCTTTT
49035640 ACCGATACAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.09, C:0.23, G:0.19, T:0.49
Consensus pattern (16 bp):
TTTCGGCTTTTCAGCA
Found at i:49037206 original size:49 final size:49
Alignment explanation
Indices: 49037083--49037206 Score: 142
Period size: 49 Copynumber: 2.5 Consensus size: 49
49037073 TTTGTGTTAG
* * *
49037083 TGTAAGACCTGTCTGGGACATGGAATCGACACCAACATATGAGAGCCAG
1 TGTAAGACCTGTCTGGGACATGGCATCGACACCAACATATGAAAGCCAA
** * * * * *
49037132 TGTAAGACCTGTCTAAGACACGGCATCGGC-CTAGATATATGAAAGTCAA
1 TGTAAGACCTGTCTGGGACATGGCATCGACACCA-ACATATGAAAGCCAA
49037181 TGTAAGACCTGTCTGGGACATGGCAT
1 TGTAAGACCTGTCTGGGACATGGCAT
49037207 TGACTTTAAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
48 2 0.03
49 59 0.97
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.22
Consensus pattern (49 bp):
TGTAAGACCTGTCTGGGACATGGCATCGACACCAACATATGAAAGCCAA
Found at i:49043337 original size:46 final size:46
Alignment explanation
Indices: 49043285--49043460 Score: 167
Period size: 46 Copynumber: 3.8 Consensus size: 46
49043275 TATTTGGACA
* *
49043285 TCCGAACTCGTTGAGTTGAGTCCGATTTCACTTATGGATGCGAACG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * * * * * *
49043331 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTA-ACTAGGCA
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-ACG
*
49043378 TCCGAACTCATTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * * *
49043424 CCCGAGCTCATTGAGTTGAGTCCAAATTCGCTTATGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
49043461 GCAGGTTACA
Statistics
Matches: 102, Mismatches: 23, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
45 1 0.01
46 66 0.65
47 34 0.33
48 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (46 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:49050255 original size:17 final size:18
Alignment explanation
Indices: 49050218--49050256 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
49050208 ATTTTATGTA
49050218 ATATAAATCACATAATAT
1 ATATAAATCACATAATAT
* *
49050236 ATATAAAT-ATATATTAT
1 ATATAAATCACATAATAT
49050253 ATAT
1 ATAT
49050257 TATAAAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (18 bp):
ATATAAATCACATAATAT
Found at i:49053831 original size:13 final size:13
Alignment explanation
Indices: 49053813--49053838 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
49053803 AAAATATATA
49053813 TATATTTAAAATT
1 TATATTTAAAATT
49053826 TATATTTAAAATT
1 TATATTTAAAATT
49053839 AGAGTTAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
TATATTTAAAATT
Found at i:49054447 original size:12 final size:12
Alignment explanation
Indices: 49054411--49054453 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
49054401 TCGTACAATA
*
49054411 AAAAATTAAAAT
1 AAAAATTAAACT
*
49054423 TAAAATTAAAAACT
1 AAAAATT--AAACT
49054437 AAAAATTAAACT
1 AAAAATTAAACT
49054449 AAAAA
1 AAAAA
49054454 AATTACCTTG
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
12 16 0.62
14 10 0.38
ACGTcount: A:0.72, C:0.05, G:0.00, T:0.23
Consensus pattern (12 bp):
AAAAATTAAACT
Found at i:49054612 original size:30 final size:28
Alignment explanation
Indices: 49054566--49054621 Score: 85
Period size: 30 Copynumber: 1.9 Consensus size: 28
49054556 ATAATATAAG
*
49054566 AATTAAAAATTATTAAATTATTAATTTT
1 AATTAAAAATTATTAAATAATTAATTTT
49054594 AATTAAAAATAATATTAAATAATTAATT
1 AATTAAAAAT--TATTAAATAATTAATT
49054622 ATATAAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 10 0.40
30 15 0.60
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (28 bp):
AATTAAAAATTATTAAATAATTAATTTT
Found at i:49057520 original size:23 final size:22
Alignment explanation
Indices: 49057469--49057520 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
49057459 CCTCGTCTTT
*
49057469 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
49057491 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
49057514 TTCTTTT
1 TTCTTTT
49057521 TCAATTTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:49064632 original size:55 final size:53
Alignment explanation
Indices: 49064544--49064799 Score: 227
Period size: 55 Copynumber: 4.8 Consensus size: 53
49064534 CATTAGGGTT
* *
49064544 TAAGGATATCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGG
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTTCTAAGG
* ** * ** *
49064599 TAAGGAAATAATGTAAGACCATGTCAAGACATGGCATTAATAAGTTACTACAAGG
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCT--AAGG
* * * *
49064654 CAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGG
1 -TAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-TAAGG
* * *
49064707 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTC-AA--
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGG
* * * * *
49064757 -AAGGATACCACGTAAGACTATGACAAGTCATGGCAATGGTAAG
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
49064800 GTACCCGTGT
Statistics
Matches: 167, Mismatches: 28, Indels: 18
0.78 0.13 0.08
Matches are distributed among these distances:
49 39 0.23
52 6 0.04
53 42 0.25
54 11 0.07
55 65 0.39
56 4 0.02
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.22
Consensus pattern (53 bp):
TAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGG
Found at i:49064910 original size:23 final size:24
Alignment explanation
Indices: 49064873--49064917 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
49064863 AAGGTAAGGT
* *
49064873 AAGGTAAGACGAGTT-ATGCTAAA
1 AAGGTAAAACAAGTTCATGCTAAA
49064896 AAGGTAAAACAAGTTCATGCTA
1 AAGGTAAAACAAGTTCATGCTA
49064918 GAAGAGCAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.44, C:0.11, G:0.22, T:0.22
Consensus pattern (24 bp):
AAGGTAAAACAAGTTCATGCTAAA
Found at i:49065017 original size:16 final size:16
Alignment explanation
Indices: 49064996--49065026 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
49064986 ATAAATTTGA
49064996 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
49065012 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
49065027 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:49070812 original size:57 final size:58
Alignment explanation
Indices: 49070714--49070833 Score: 163
Period size: 57 Copynumber: 2.1 Consensus size: 58
49070704 GAGATAGTGT
* *
49070714 AAATGGAGAAATAGGAAACACTCGAAAATTATTATGGTTTTCTCC-AAAATAAAAATGA
1 AAATGGAGAAATAGGAAACACTCGAAAATGAATATGGTTTTCTCCAAAAAT-AAAATGA
* * * *
49070772 AAATGGAGAAATA-GAATCATTTGAAAATGAATGTGGTTTTCTCCAAAAATAAAATGA
1 AAATGGAGAAATAGGAAACACTCGAAAATGAATATGGTTTTCTCCAAAAATAAAATGA
49070829 AAATG
1 AAATG
49070834 AAAAATGAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
57 37 0.67
58 18 0.33
ACGTcount: A:0.48, C:0.08, G:0.17, T:0.27
Consensus pattern (58 bp):
AAATGGAGAAATAGGAAACACTCGAAAATGAATATGGTTTTCTCCAAAAATAAAATGA
Found at i:49070840 original size:13 final size:13
Alignment explanation
Indices: 49070822--49070847 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
49070812 CTCCAAAAAT
49070822 AAAATGAAAATGA
1 AAAATGAAAATGA
49070835 AAAATGAAAATGA
1 AAAATGAAAATGA
49070848 CCTGAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.00, G:0.15, T:0.15
Consensus pattern (13 bp):
AAAATGAAAATGA
Found at i:49070854 original size:57 final size:57
Alignment explanation
Indices: 49070748--49070860 Score: 149
Period size: 57 Copynumber: 2.0 Consensus size: 57
49070738 AAAATTATTA
* * **
49070748 TGGTTTTCTCCAAAATAAAAATGAAAATGGAGAAATAGAATCATTTGAAAATGAATG
1 TGGTTTTCTCCAAAATAAAAATGAAAATGGAAAAATAAAATCACCTGAAAATGAATG
*
49070805 TGGTTTTCTCCAAAA-ATAAAATGAAAAT-GAAAAATGAAAATGACCTGAAAATGAAT
1 TGGTTTTCTCCAAAATA-AAAATGAAAATGGAAAAAT-AAAATCACCTGAAAATGAAT
49070861 TTATCTTTTT
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
56 7 0.14
57 42 0.86
ACGTcount: A:0.50, C:0.08, G:0.16, T:0.27
Consensus pattern (57 bp):
TGGTTTTCTCCAAAATAAAAATGAAAATGGAAAAATAAAATCACCTGAAAATGAATG
Found at i:49072052 original size:13 final size:13
Alignment explanation
Indices: 49072034--49072060 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
49072024 TTAGTGAGAA
49072034 AACGCATTTATTT
1 AACGCATTTATTT
49072047 AACGCATTTATTT
1 AACGCATTTATTT
49072060 A
1 A
49072061 TGAATGCGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.15, G:0.07, T:0.44
Consensus pattern (13 bp):
AACGCATTTATTT
Found at i:49075871 original size:58 final size:59
Alignment explanation
Indices: 49075800--49075911 Score: 190
Period size: 58 Copynumber: 1.9 Consensus size: 59
49075790 CCTCAATAAA
* * *
49075800 TTTTTTTAAAAATATGTCGTTATTTTTTCA-ATTGCATCATTTTTTATAGTAATAATAT
1 TTTTTTTAAAAATATGTCGTCATTATTTCACATTGCATAATTTTTTATAGTAATAATAT
49075858 TTTTTTTAAAAATATGTCGTCATTATTTCACATTGCATAATTTTTTATAGTAAT
1 TTTTTTTAAAAATATGTCGTCATTATTTCACATTGCATAATTTTTTATAGTAAT
49075912 TTATGTCGTC
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
58 28 0.56
59 22 0.44
ACGTcount: A:0.31, C:0.08, G:0.07, T:0.54
Consensus pattern (59 bp):
TTTTTTTAAAAATATGTCGTCATTATTTCACATTGCATAATTTTTTATAGTAATAATAT
Found at i:49077240 original size:364 final size:364
Alignment explanation
Indices: 49076571--49077271 Score: 1330
Period size: 364 Copynumber: 1.9 Consensus size: 364
49076561 TATATATATG
49076571 TATATATTTATGCATGTATCATATTACAAAAACAAAATTTTAATTACTTATACCTAATAAAACAT
1 TATATATTTATGCATGTATCATATTACAAAAACAAAATTTTAATTACTTATACCTAATAAAACAT
49076636 GCATCTCATTACAATAATAGTTATTTTCCAAATAACATATTGTTTTATAATTTTATTTCTTATTT
66 GCATCTCATTACAATAATAGTTATTTTCCAAATAACATATTGTTTTATAATTTTATTTCTTATTT
49076701 AATATTTTAATTTAATTTTAATAATGCATACTTTATTCTGATGAAGTATGTATTAGCAGATTCAG
131 AATATTTTAATTTAATTTTAATAATGCATACTTTATTCTGATGAAGTATGTATTAGCAGATTCAG
* *
49076766 TAATATCTAGTTGGACTGCCACGTAGGATTACCGTTAGGGAGATAACAGTACTTAACGGAAGAGT
196 TAATATCTAGTTAGACTGCCACGTAGGATTACCGTTAGGGAGATAACAGAACTTAACGGAAGAGT
*
49076831 GATCACTTCATAATAAAATAATAACATAAGTGACTAAAACGTAACATTTCAAACATAAGTGACGA
261 GATCACTTCATAATAAAATAATAACATAACTGACTAAAACGTAACATTTCAAACATAAGTGACGA
49076896 AAATGTAACATGTATTAGCAGATTCACTATATGATTATA
326 AAATGTAACATGTATTAGCAGATTCACTATATGATTATA
49076935 TATATATTTATGCATGTATCATATTACAAAAACAAAATTTTAATTACTTATACCTAATAAAACAT
1 TATATATTTATGCATGTATCATATTACAAAAACAAAATTTTAATTACTTATACCTAATAAAACAT
*
49077000 GCATCTCATTACAATAATAGTTATTTTCCAAATAACATATTGTTTTATATTTTTATTTCTTATTT
66 GCATCTCATTACAATAATAGTTATTTTCCAAATAACATATTGTTTTATAATTTTATTTCTTATTT
49077065 AATATTTTAATTTAATTTTAATAATGCATACTTTATTCTGATGAAGTATGTATTAGCAGATTCAG
131 AATATTTTAATTTAATTTTAATAATGCATACTTTATTCTGATGAAGTATGTATTAGCAGATTCAG
* *
49077130 TAATATCTAGTTAGACTGTCACGTAGGATTACTGTTAGGGAGATAACAGAACTTAACGGAAGAGT
196 TAATATCTAGTTAGACTGCCACGTAGGATTACCGTTAGGGAGATAACAGAACTTAACGGAAGAGT
* *
49077195 GATCACTTCGTAATAAAATAATAACATAACTGACTAAAACGTAACATTTCAAACATAAGTGACTA
261 GATCACTTCATAATAAAATAATAACATAACTGACTAAAACGTAACATTTCAAACATAAGTGACGA
49077260 AAATGTAACATG
326 AAATGTAACATG
49077272 AGTCAAACAA
Statistics
Matches: 329, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
364 329 1.00
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.37
Consensus pattern (364 bp):
TATATATTTATGCATGTATCATATTACAAAAACAAAATTTTAATTACTTATACCTAATAAAACAT
GCATCTCATTACAATAATAGTTATTTTCCAAATAACATATTGTTTTATAATTTTATTTCTTATTT
AATATTTTAATTTAATTTTAATAATGCATACTTTATTCTGATGAAGTATGTATTAGCAGATTCAG
TAATATCTAGTTAGACTGCCACGTAGGATTACCGTTAGGGAGATAACAGAACTTAACGGAAGAGT
GATCACTTCATAATAAAATAATAACATAACTGACTAAAACGTAACATTTCAAACATAAGTGACGA
AAATGTAACATGTATTAGCAGATTCACTATATGATTATA
Found at i:49077286 original size:31 final size:29
Alignment explanation
Indices: 49077225--49077290 Score: 87
Period size: 29 Copynumber: 2.2 Consensus size: 29
49077215 ATAACATAAC
* *
49077225 TGACTAAAACGTAACATTTCAAACATAAG
1 TGACTAAAACGTAACATGTCAAACAAAAG
*
49077254 TGACTAAAATGTAACATGAGTCAAACAAAAG
1 TGACTAAAACGTAACAT--GTCAAACAAAAG
49077285 TGACTA
1 TGACTA
49077291 TTTTTATAGT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
29 16 0.50
31 16 0.50
ACGTcount: A:0.48, C:0.15, G:0.14, T:0.23
Consensus pattern (29 bp):
TGACTAAAACGTAACATGTCAAACAAAAG
Found at i:49077884 original size:28 final size:27
Alignment explanation
Indices: 49077848--49077902 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 27
49077838 TTTTATCATG
* *
49077848 ATTTGAATATTAATATTAATATATTTTA
1 ATTTAAATAATAATATTAATA-ATTTTA
*
49077876 ATTTAAATAATATTATTAATAATTTTA
1 ATTTAAATAATAATATTAATAATTTTA
49077903 GGTACATTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
27 6 0.25
28 18 0.75
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (27 bp):
ATTTAAATAATAATATTAATAATTTTA
Found at i:49078183 original size:19 final size:19
Alignment explanation
Indices: 49078159--49078198 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
49078149 TATGCTCAAT
*
49078159 TTTTATTATTCGATTTTTA
1 TTTTATTATTAGATTTTTA
*
49078178 TTTTATTATTATATTTTTA
1 TTTTATTATTAGATTTTTA
49078197 TT
1 TT
49078199 ATTTGAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.72
Consensus pattern (19 bp):
TTTTATTATTAGATTTTTA
Found at i:49078565 original size:162 final size:161
Alignment explanation
Indices: 49078317--49078619 Score: 452
Period size: 162 Copynumber: 1.9 Consensus size: 161
49078307 ATTAGACGTT
* * *
49078317 AACTCAATTATAAATTTATAAAAAAATCTTTCGTATTTAAAATGAATTATATTATTCAATGGTAC
1 AACTCAATTACAAATTTACAAAAAAAACTTTCGTATTTAAAATGAATTATATTATTCAATGGTAC
*
49078382 TTTAGTTAATTTAATTAAAAAATAAAAATATATGTATTAT-AAATTTGAACCTAT-GTCAATTAC
66 TTTAGTTAATTTAATTAAAAAATAAAAATATATGTATTATGAAATTTGAACCCATAG-CAATTAC
*
49078445 ATTGAAAAAAATATACGAGTTAATTAGGCACC
130 ATTAAAAAAAATATACGAGTTAATTAGGCACC
* *
49078477 AACTCAATTACGAATTTACAAAAAAAGACTTTTCGTATTTAAAAT-AAGTTATATTATTCGA-GA
1 AACTCAATTACAAATTTACAAAAAAA-AC-TTTCGTATTTAAAATGAA-TTATATTATTCAATG-
* *
49078540 GTACTTTAGTTACTTTAATTAAAAAATAAAAATATATGTATTATGAGATTTGAACCCATAGCAAT
62 GTACTTTAGTTAATTTAATTAAAAAATAAAAATATATGTATTATGAAATTTGAACCCATAGCAAT
49078605 TACATTAAAAAAAAT
127 TACATTAAAAAAAAT
49078620 TTAAATTTAT
Statistics
Matches: 128, Mismatches: 9, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
160 23 0.18
161 4 0.03
162 70 0.55
163 30 0.23
164 1 0.01
ACGTcount: A:0.46, C:0.09, G:0.09, T:0.36
Consensus pattern (161 bp):
AACTCAATTACAAATTTACAAAAAAAACTTTCGTATTTAAAATGAATTATATTATTCAATGGTAC
TTTAGTTAATTTAATTAAAAAATAAAAATATATGTATTATGAAATTTGAACCCATAGCAATTACA
TTAAAAAAAATATACGAGTTAATTAGGCACC
Found at i:49085125 original size:21 final size:20
Alignment explanation
Indices: 49085087--49085145 Score: 59
Period size: 21 Copynumber: 3.0 Consensus size: 20
49085077 AGCTTCTCGA
*
49085087 AGAAGAAG-AGAAGGAAAAGCG
1 AGAAGAAGAAGAA-CAAAAG-G
*
49085108 TGAAGAAGAAGAACAAAAGG
1 AGAAGAAGAAGAACAAAAGG
*
49085128 AGAGGAA-AAGAACAAAAG
1 AGAAGAAGAAGAACAAAAG
49085146 AACGAGAGAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
19 11 0.33
20 6 0.18
21 12 0.36
22 4 0.12
ACGTcount: A:0.61, C:0.05, G:0.32, T:0.02
Consensus pattern (20 bp):
AGAAGAAGAAGAACAAAAGG
Found at i:49085152 original size:22 final size:19
Alignment explanation
Indices: 49085111--49085159 Score: 53
Period size: 19 Copynumber: 2.4 Consensus size: 19
49085101 AAAAGCGTGA
*
49085111 AGAAGAAGAACAAAAGGAG
1 AGAAAAAGAACAAAAGGAG
*
49085130 AGGAAAAGAACAAAAGAACGAG
1 AGAAAAAGAACAAAAG---GAG
49085152 AGAAAAAG
1 AGAAAAAG
49085160 CTCAGGAGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
19 14 0.58
22 10 0.42
ACGTcount: A:0.65, C:0.06, G:0.29, T:0.00
Consensus pattern (19 bp):
AGAAAAAGAACAAAAGGAG
Found at i:49086713 original size:129 final size:129
Alignment explanation
Indices: 49086474--49086730 Score: 338
Period size: 129 Copynumber: 2.0 Consensus size: 129
49086464 TCAACGATCA
* * * *
49086474 GATGGGAGAGATACTTCAAGCTGCGTTCAAAATGGTTTCTCCGAGTGTCAGGTGAAGGGAATTGA
1 GATGGGAGAGATACTTCAAGCTGCATTCAAAATGGCTTCTCCGAGTGTCAGGTGAAAGGAATCGA
* * *
49086539 TAAAAAAGAGGATGTCAATGGAGGCATTGCTTTGGAAAGCGAGGCATTGTTTGGACATTCACCT
66 AAAAAAACAGGATGTCAATGGAGGCATTGCTTTGGAAAGCCAGGCATTGTTTGGACATTCACCT
* * * *
49086603 GATGGGAGAGATTCTTC-AGTCTGCATTCAAGATGGCTTCTCTGAGTGTCAGGTTAAAGGAATCG
1 GATGGGAGAGATACTTCAAG-CTGCATTCAAAATGGCTTCTCCGAGTGTCAGGTGAAAGGAATCG
* ** * *
49086667 AAAAAAAACAGGATGTCAATGGGGGGGTTGCTTTGGTATA-CCAGGCATTGTTTGGGCATTCACC
65 AAAAAAAACAGGATGTCAATGGAGGCATTGCTTTGG-AAAGCCAGGCATTGTTTGGACATTCACC
49086731 AGACAGTAGA
Statistics
Matches: 110, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
128 2 0.02
129 106 0.96
130 2 0.02
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.27
Consensus pattern (129 bp):
GATGGGAGAGATACTTCAAGCTGCATTCAAAATGGCTTCTCCGAGTGTCAGGTGAAAGGAATCGA
AAAAAAACAGGATGTCAATGGAGGCATTGCTTTGGAAAGCCAGGCATTGTTTGGACATTCACCT
Found at i:49090740 original size:17 final size:19
Alignment explanation
Indices: 49090707--49090741 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
49090697 ATTATTTGGA
49090707 TATTATATAACTTTTGTTT
1 TATTATATAACTTTTGTTT
49090726 TATTAT-TAA-TTTTGTT
1 TATTATATAACTTTTGTT
49090742 ACTATTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 3 0.19
19 6 0.38
ACGTcount: A:0.26, C:0.03, G:0.06, T:0.66
Consensus pattern (19 bp):
TATTATATAACTTTTGTTT
Found at i:49091202 original size:22 final size:23
Alignment explanation
Indices: 49091157--49091213 Score: 64
Period size: 22 Copynumber: 2.5 Consensus size: 23
49091147 AAAAAATATT
*
49091157 TTTTATTTTTTCTTCTTCTTCCC
1 TTTTATTTTTTCTTCTTCTCCCC
49091180 TTTTATTATTTT-TT-TTCTCCCC
1 TTTTATT-TTTTCTTCTTCTCCCC
**
49091202 TTCAATTTTTTC
1 TTTTATTTTTTC
49091214 ATGCTCTCTC
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 4 0.14
22 12 0.41
23 9 0.31
24 4 0.14
ACGTcount: A:0.09, C:0.23, G:0.00, T:0.68
Consensus pattern (23 bp):
TTTTATTTTTTCTTCTTCTCCCC
Found at i:49091288 original size:17 final size:19
Alignment explanation
Indices: 49091266--49091301 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
49091256 CTTTTGTTTT
49091266 TCCTTT-TTT-TTCTTCTC
1 TCCTTTCTTTATTCTTCTC
49091283 TCCTTTCTTTATTCTTCTC
1 TCCTTTCTTTATTCTTCTC
49091302 CCAAACTCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.35
18 3 0.18
19 8 0.47
ACGTcount: A:0.03, C:0.31, G:0.00, T:0.67
Consensus pattern (19 bp):
TCCTTTCTTTATTCTTCTC
Found at i:49092842 original size:50 final size:49
Alignment explanation
Indices: 49092724--49092853 Score: 197
Period size: 50 Copynumber: 2.6 Consensus size: 49
49092714 TTGGTACCCA
* * **
49092724 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAATCTAATACACG
* *
49092773 TAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AACAATCTAATACACG
49092823 TAGTAGCCTGCACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
49092854 TCACAGTTTT
Statistics
Matches: 74, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
49 31 0.42
50 43 0.58
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAATCTAATACACG
Found at i:49092897 original size:101 final size:99
Alignment explanation
Indices: 49092724--49092910 Score: 259
Period size: 101 Copynumber: 1.9 Consensus size: 99
49092714 TTGGTACCCA
* * *
49092724 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAATCGGGTACACATAGTAGCCTGCACTTA
*
49092789 GTACTACACACGTGACCTCACCATCTAATACACG
66 GTACTACACACGCGACCTCACCATCTAATACACG
* * * *
49092823 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACA---ATCGGGTACACATAGTAGCCTGCAC
*
49092887 TTAGTACTACACATGCGACCTCAC
63 TTAGTACTACACACGCGACCTCAC
49092911 AATAGATCAT
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
98 3 0.04
99 30 0.39
101 43 0.57
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAATCGGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTCACCATCTAATACACG
Found at i:49094627 original size:15 final size:15
Alignment explanation
Indices: 49094571--49094635 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
49094561 TAAAGATAAC
*
49094571 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
49094585 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
49094600 GAA-AAACCCAGAATA
1 -AAGAAATCCAGAATA
49094615 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
49094630 AAGAAA
1 AAGAAA
49094636 CCCAAGATAC
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 11 0.26
15 29 0.67
16 3 0.07
ACGTcount: A:0.63, C:0.14, G:0.14, T:0.09
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:49094637 original size:30 final size:31
Alignment explanation
Indices: 49094571--49094639 Score: 92
Period size: 30 Copynumber: 2.3 Consensus size: 31
49094561 TAAAGATAAC
*
49094571 AAGAAAACC-GAATAAAGAAATCCAAGATAG
1 AAGAAACCCAGAATAAAGAAATCCAAGATAG
49094601 AA-AAACCCAGAATAAAGAAATCC-AGAATA-
1 AAGAAACCCAGAATAAAGAAATCCAAG-ATAG
49094630 AAGAAACCCA
1 AAGAAACCCA
49094640 AGATACGATA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
29 9 0.26
30 26 0.74
ACGTcount: A:0.61, C:0.17, G:0.13, T:0.09
Consensus pattern (31 bp):
AAGAAACCCAGAATAAAGAAATCCAAGATAG
Found at i:49094657 original size:17 final size:17
Alignment explanation
Indices: 49094635--49094669 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
49094625 GAATAAAGAA
49094635 ACCCAAGATACGATACT
1 ACCCAAGATACGATACT
49094652 ACCCAAGATACGATACT
1 ACCCAAGATACGATACT
49094669 A
1 A
49094670 TGTCGGAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.43, C:0.29, G:0.11, T:0.17
Consensus pattern (17 bp):
ACCCAAGATACGATACT
Found at i:49097770 original size:50 final size:49
Alignment explanation
Indices: 49097652--49097781 Score: 197
Period size: 50 Copynumber: 2.6 Consensus size: 49
49097642 TTGGTACCCA
* * **
49097652 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAATCTAATACACG
* *
49097701 TAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AACAATCTAATACACG
49097751 TAGTAGCCTGCACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
49097782 TCACAGTTTT
Statistics
Matches: 74, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
49 31 0.42
50 43 0.58
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAATCTAATACACG
Found at i:49097825 original size:101 final size:99
Alignment explanation
Indices: 49097652--49097838 Score: 259
Period size: 101 Copynumber: 1.9 Consensus size: 99
49097642 TTGGTACCCA
* * *
49097652 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAATCGGGTACACATAGTAGCCTGCACTTA
*
49097717 GTACTACACACGTGACCTCACCATCTAATACACG
66 GTACTACACACGCGACCTCACCATCTAATACACG
* * * *
49097751 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACA---ATCGGGTACACATAGTAGCCTGCAC
*
49097815 TTAGTACTACACATGCGACCTCAC
63 TTAGTACTACACACGCGACCTCAC
49097839 AATAGATCAT
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
98 3 0.04
99 30 0.39
101 43 0.57
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAATCGGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTCACCATCTAATACACG
Found at i:49105561 original size:49 final size:47
Alignment explanation
Indices: 49105491--49105940 Score: 724
Period size: 47 Copynumber: 9.5 Consensus size: 47
49105481 ATTCAGCCAA
49105491 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
49105538 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
49105587 GAAAGTTATATATATGTGATAA-GCCTAATGGCCGATGTGATGAATGT
1 GAAAG-TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
49105634 GAAAGTGTATACATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
49105681 GAAAGTGTATACATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
49105728 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
49105777 GAAAGTGCATATATATGTGATAAGGCCTAATGGCCGATGTGATG-ATGT
1 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
49105825 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* * * * * * *
49105872 GAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
49105919 GAAAGTGTATAAATGTGATAAG
1 GAAAGTGTATATATGTGATAAG
49105941 TCCCGAAGGG
Statistics
Matches: 381, Mismatches: 15, Indels: 14
0.93 0.04 0.03
Matches are distributed among these distances:
46 49 0.13
47 179 0.47
48 25 0.07
49 127 0.33
50 1 0.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
Found at i:49105921 original size:191 final size:190
Alignment explanation
Indices: 49105491--49105940 Score: 771
Period size: 191 Copynumber: 2.4 Consensus size: 190
49105481 ATTCAGCCAA
49105491 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGT
*
49105556 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTTATATATATGTGATAAGCCTAATGGCCG
66 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTCATATATATGTGATAAGCCTAATGGCCG
49105621 ATGTGATGAATGTGAAAGTGTATACATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
131 ATGTGATGAATGTGAAAGTGTATACATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
49105681 GAAAGTGTATACATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGT
49105746 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGCATATATATGTGATAAGGCCTAATGGC
66 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT-CATATATATGTGATAA-GCCTAATGGC
*
49105811 CGATGTGATG-ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
129 CGATGTGATGAATGTGAAAGTGTATACATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* * * * * * *
49105872 GAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGT
49105935 GATAAG
66 GATAAG
49105941 TCCCGAAGGG
Statistics
Matches: 247, Mismatches: 11, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
189 10 0.04
190 102 0.41
191 115 0.47
192 20 0.08
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (190 bp):
GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGT
GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTCATATATATGTGATAAGCCTAATGGCCG
ATGTGATGAATGTGAAAGTGTATACATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
Found at i:49106115 original size:37 final size:37
Alignment explanation
Indices: 49106059--49106137 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
49106049 CCGAGCTCTA
* * *
49106059 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
49106096 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
49106133 AAGAC
1 AAGAC
49106138 TTCATAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:49107594 original size:40 final size:40
Alignment explanation
Indices: 49107351--49107582 Score: 347
Period size: 40 Copynumber: 5.8 Consensus size: 40
49107341 GAGAATTGAG
*
49107351 AGTGATATATCTGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
**
49107391 AGTGATATATCCGGGCTAAGTATCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
49107431 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
49107471 AGTGATATATCCAGGTTAAATCCCGAAGAGCATTCGTCCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
49107511 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
49107551 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
49107583 ATCATGCTGG
Statistics
Matches: 170, Mismatches: 22, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 170 1.00
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:49111204 original size:96 final size:96
Alignment explanation
Indices: 49111088--49111537 Score: 784
Period size: 96 Copynumber: 4.7 Consensus size: 96
49111078 ATTCAGCCAA
49111088 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATACATGT
1 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATACATGT
49111151 GATAAGGCCTAATGGCCGATGTGATGAATGT
66 GATAAGGCCTAATGGCCGATGTGATGAATGT
49111182 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATACATGT
1 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATACATGT
49111247 GATAAGGCCTAATGGCCGATGTGATGAATGT
66 GATAAGGCCTAATGGCCGATGTGATGAATGT
49111278 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATACATGT
1 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATACATGT
49111343 GATAAGGCCTAATGGCCGATGTGATGAATGT
66 GATAAGGCCTAATGGCCGATGTGATGAATGT
*
49111374 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG-ATGTGAAAGTGTATATATGT
1 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATACATGT
49111438 GATAAGGCCTAATGGCCGATGTGATGAATGT
66 GATAAGGCCTAATGGCCGATGTGATGAATGT
* * * * * * * *
49111469 GAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGT
1 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATACATGT
49111532 GATAAG
66 GATAAG
49111538 TCTCGAAGGG
Statistics
Matches: 345, Mismatches: 8, Indels: 6
0.96 0.02 0.02
Matches are distributed among these distances:
93 29 0.08
94 32 0.09
95 57 0.17
96 227 0.66
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (96 bp):
GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATACATGT
GATAAGGCCTAATGGCCGATGTGATGAATGT
Found at i:49111219 original size:49 final size:47
Alignment explanation
Indices: 49111088--49111537 Score: 740
Period size: 47 Copynumber: 9.5 Consensus size: 47
49111078 ATTCAGCCAA
49111088 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
49111135 GAAAGTGTATACATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
49111182 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
49111231 GAAAGTGTATACATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
49111278 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
49111327 GAAAGTGTATACATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
49111374 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG-ATGT
1 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
49111422 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* * * * * * *
49111469 GAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
49111516 GAAAGTGTATAAATGTGATAAG
1 GAAAGTGTATATATGTGATAAG
49111538 TCTCGAAGGG
Statistics
Matches: 380, Mismatches: 16, Indels: 14
0.93 0.04 0.03
Matches are distributed among these distances:
46 35 0.09
47 208 0.55
48 11 0.03
49 126 0.33
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
Found at i:49111712 original size:37 final size:37
Alignment explanation
Indices: 49111656--49111734 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
49111646 CCGAGCTCTA
* * *
49111656 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
49111693 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
49111730 AAGAC
1 AAGAC
49111735 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:49114166 original size:69 final size:69
Alignment explanation
Indices: 49114055--49114191 Score: 274
Period size: 69 Copynumber: 2.0 Consensus size: 69
49114045 CAAATGCTTC
49114055 AATTGATAGTGTGATAGATATCTCTGACTTCCGTTGACCCTTGAGCTAGATAGGCGACACTATAA
1 AATTGATAGTGTGATAGATATCTCTGACTTCCGTTGACCCTTGAGCTAGATAGGCGACACTATAA
49114120 GAAG
66 GAAG
49114124 AATTGATAGTGTGATAGATATCTCTGACTTCCGTTGACCCTTGAGCTAGATAGGCGACACTATAA
1 AATTGATAGTGTGATAGATATCTCTGACTTCCGTTGACCCTTGAGCTAGATAGGCGACACTATAA
49114189 GAA
66 GAA
49114192 AAATGAAAGG
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 68 1.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.29
Consensus pattern (69 bp):
AATTGATAGTGTGATAGATATCTCTGACTTCCGTTGACCCTTGAGCTAGATAGGCGACACTATAA
GAAG
Found at i:49114571 original size:47 final size:48
Alignment explanation
Indices: 49114498--49114717 Score: 210
Period size: 47 Copynumber: 4.7 Consensus size: 48
49114488 GTAAGGAGCT
*
49114498 GATGCCATGTCCCAGACACGGTCTTACACTAGCTCAT-ATCTCATGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCATCTCATGTC
* * *
49114545 GGTGCCATGTCCCAGACATGGCCTTACACT-GACT-ATCATCTCGTAGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAG-CTCATCATCTCAT-GTC
* * *
49114593 GATG-CATGTCCCAGACAT-GTCTTACACTAGCAC-TCGTCTCGATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCATCTC-ATGTC
* * *
49114639 GATGCTATGTCCCAGACATGGTCTTACACTGGCTC-TCA--TAATGTTGC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCATCTCATG-T-C
*
49114686 TGATG-CATGTCCCAGACA-CGTCTTACACTAGC
1 -GATGCCATGTCCCAGACATGGTCTTACACTAGC
49114718 GCACAATGAC
Statistics
Matches: 143, Mismatches: 19, Indels: 23
0.77 0.10 0.12
Matches are distributed among these distances:
45 3 0.02
46 38 0.27
47 77 0.54
48 25 0.17
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCATCTCATGTC
Found at i:49114665 original size:94 final size:93
Alignment explanation
Indices: 49114494--49114717 Score: 274
Period size: 94 Copynumber: 2.4 Consensus size: 93
49114484 GTGGGTAAGG
* * *
49114494 AGCTGATGCCATGTCCCAGACACGGTCTTACACTAGCTCATATCTCATGTCGGTGCCATGTCCCA
1 AGCTGATG-CATGTCCCAGACAC-GTCTTACACTAGCACATATCTCATGCCGATGCCATGTCCCA
*
49114559 GACATGGCCTTACACTGACTATCAT-CTCGT
64 GACATGGCCTTACACTGACTATCATAAT-GT
* * *
49114589 AG-TCGATGCATGTCCCAGACATGTCTTACACTAGCAC-TCGTCTCGATGCCGATGCTATGTCCC
1 AGCT-GATGCATGTCCCAGACACGTCTTACACTAGCACAT-ATCTC-ATGCCGATGCCATGTCCC
* * *
49114652 AGACATGGTCTTACACTGGCTCTCATAATGT
63 AGACATGGCCTTACACTGACTATCATAATGT
*
49114683 TGCTGATGCATGTCCCAGACACGTCTTACACTAGC
1 AGCTGATGCATGTCCCAGACACGTCTTACACTAGC
49114718 GCACAATGAC
Statistics
Matches: 112, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
92 1 0.01
93 18 0.16
94 85 0.76
95 8 0.07
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (93 bp):
AGCTGATGCATGTCCCAGACACGTCTTACACTAGCACATATCTCATGCCGATGCCATGTCCCAGA
CATGGCCTTACACTGACTATCATAATGT
Found at i:49116840 original size:40 final size:40
Alignment explanation
Indices: 49116795--49116986 Score: 226
Period size: 40 Copynumber: 4.8 Consensus size: 40
49116785 ATAACCACAA
* * *
49116795 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
49116835 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
49116875 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * *
49116915 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
49116955 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
49116987 CATTCAAATG
Statistics
Matches: 142, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 1 0.01
40 137 0.96
41 4 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:49116879 original size:80 final size:80
Alignment explanation
Indices: 49116766--49116985 Score: 248
Period size: 80 Copynumber: 2.8 Consensus size: 80
49116756 ACCCAAGTTT
* * * * * * * * *
49116766 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAG
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAG
*
49116829 CAACTCGCACAAATGC
66 C-ACTAGCACAAATGC
* * *
49116845 CTTCGGGTCTTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
1 CTTCGGGACTTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
* *
49116909 TCACTAGCATAAATGC
65 GCACTAGCACAAATGC
* *
49116925 CTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATA
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATA
49116986 TCATTCAAAT
Statistics
Matches: 117, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
79 12 0.10
80 98 0.84
81 7 0.06
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAG
CACTAGCACAAATGC
Found at i:49119065 original size:59 final size:59
Alignment explanation
Indices: 49118999--49119111 Score: 190
Period size: 59 Copynumber: 1.9 Consensus size: 59
49118989 TCAACAACTC
*
49118999 AATTTTGACCATTTCTCTTTCTTATGTCCCCTACGGCTGGCTAGCATCCTCTCTCACTT
1 AATTTTGAACATTTCTCTTTCTTATGTCCCCTACGGCTGGCTAGCATCCTCTCTCACTT
* * *
49119058 AATTTTGAACATTTCTCTTTCTTCTGTCCCCTATGGTTGGCTAGCATCCTCTCT
1 AATTTTGAACATTTCTCTTTCTTATGTCCCCTACGGCTGGCTAGCATCCTCTCT
49119112 AAGGTCTATT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
59 50 1.00
ACGTcount: A:0.15, C:0.30, G:0.12, T:0.42
Consensus pattern (59 bp):
AATTTTGAACATTTCTCTTTCTTATGTCCCCTACGGCTGGCTAGCATCCTCTCTCACTT
Found at i:49125676 original size:46 final size:47
Alignment explanation
Indices: 49125482--49125711 Score: 231
Period size: 47 Copynumber: 4.9 Consensus size: 47
49125472 GTGGGTAAGG
*
49125482 TGCCGATGCCATGTCCCAGACACGGTCTTACACTAGCTCGT-ATCTC-A
1 TGCCGATGCCATGTCCCAGACA-TGTCTTACACTAGCTC-TCATCTCGA
* * *
49125529 TGTCAATGCCATGTCCCAGACATGGTCTTACACT-GACTATCATCTCG-
1 TGCCGATGCCATGTCCCAGACAT-GTCTTACACTAG-CTCTCATCTCGA
* * * *
49125576 TAGCCGATG-CATGTCCCAAACATGTCTTTCACTGGCT-TACATCTTGA
1 T-GCCGATGCCATGTCCCAGACATGTCTTACACTAGCTCT-CATCTCGA
* * * *
49125623 GGTCGATG-CTTGTCCCAGACATGTCTTACACTAGCTCTCGTCTCGA
1 TGCCGATGCCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGA
*
49125669 TGCCGATGCCATATCCCAGACATGGTCTTACACTAGCTCTCAT
1 TGCCGATGCCATGTCCCAGACAT-GTCTTACACTAGCTCTCAT
49125712 AATGTGGCTA
Statistics
Matches: 150, Mismatches: 22, Indels: 21
0.78 0.11 0.11
Matches are distributed among these distances:
45 1 0.01
46 61 0.41
47 65 0.43
48 23 0.15
ACGTcount: A:0.22, C:0.31, G:0.18, T:0.29
Consensus pattern (47 bp):
TGCCGATGCCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGA
Done.