Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 155 of 316
Found at i:49129274 original size:20 final size:21
Alignment explanation
Indices: 49129231--49129276 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
49129221 ACAATTTTAT
49129231 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
49129251 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
49129270 TATGGGC
1 TATGGGC
49129277 AAGGCCCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:49129369 original size:60 final size:61
Alignment explanation
Indices: 49129271--49129431 Score: 152
Period size: 60 Copynumber: 2.7 Consensus size: 61
49129261 CTGTGTTAAT
* * * * *
49129271 ATGGGCAAGGCCCAATATA-TCTCGA-CTTGTAATAGGGCTACGACCTAGATTGATACTGAC
1 ATGGGCTAGGCCCAGTATACTCT-GATATTGTAATAGGGCTACGACCCAGATTAATACTGAC
* * * * *
49129331 ATGGGCTAGGCCCAGTATACTCTGATATTGTAA-GGGGCTATGGCCCAGATTAATATTGAT
1 ATGGGCTAGGCCCAGTATACTCTGATATTGTAATAGGGCTACGACCCAGATTAATACTGAC
*
49129391 ATGGGCTAAGGCCCAGT-TAACTCTGAT-TTCTGAATAGGGCT
1 ATGGGCT-AGGCCCAGTAT-ACTCTGATATTGT-AATAGGGCT
49129432 TAGGCCTAGT
Statistics
Matches: 83, Mismatches: 12, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
60 50 0.60
61 28 0.34
62 5 0.06
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.28
Consensus pattern (61 bp):
ATGGGCTAGGCCCAGTATACTCTGATATTGTAATAGGGCTACGACCCAGATTAATACTGAC
Found at i:49132378 original size:129 final size:128
Alignment explanation
Indices: 49132120--49132459 Score: 407
Period size: 129 Copynumber: 2.6 Consensus size: 128
49132110 GTCCAACGAA
* * * * * * *
49132120 AAATCGAAACCCAGCAAGGTAGGGTATGATTCCCCGAATTTCCAAACTTTGAACATTGCCTT-AT
1 AAATCGCAACCCAGCACGGTAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTGCCTTCAT
* ** * ** * *
49132184 TTTAGAATTTAGAGAA-CACAAGTGAAATTCTAAAGGGATATTCGATTATTTTGAACAAACAGG
66 TTAAGAATTTTTA-AATGACAAGTGAAAAACCAAAGGAATATTCGATTATTTTGAACAAACAGG
* *
49132247 AAATCGCAACCCAGCACGGTAGGGCACGATTCCCCGAATTGCCTAACATCGAACATTACCTTCAT
1 AAATCGCAACCCAGCACGGTAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTGCCTTCAT
* *
49132312 TTAAAGAATTTTTAAATGA-ATAGTGAAAAACCAAAGGAATATTCGATTATTTTGAACAAGCGGG
66 TT-AAGAATTTTTAAATGACA-AGTGAAAAACCAAAGGAATATTCGATTATTTTGAACAAACAGG
* * *
49132376 AAATTGCAACCTAGCACGATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTGCCTTCGT
1 AAATCGCAACCCAGCACGGTAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTGCCTTC--
*
49132441 TTTTAAGAATTTTTAAATG
64 ATTTAAGAATTTTTAAATG
49132460 GATAATTATA
Statistics
Matches: 182, Mismatches: 25, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
127 53 0.29
128 7 0.04
129 104 0.57
130 15 0.08
131 3 0.02
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (128 bp):
AAATCGCAACCCAGCACGGTAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTGCCTTCAT
TTAAGAATTTTTAAATGACAAGTGAAAAACCAAAGGAATATTCGATTATTTTGAACAAACAGG
Found at i:49135292 original size:45 final size:45
Alignment explanation
Indices: 49135160--49135292 Score: 128
Period size: 45 Copynumber: 3.0 Consensus size: 45
49135150 CATTTTAATC
* ** ** *
49135160 CTACTCTACTGCAACTTCAAAGAGATAAGGAT-TGTGA-CTTCAAT
1 CTACTCCACTGCAACTTCAGGGAGATAA-GATCTGCAATCTTCAGT
* * *
49135204 CTACTCCACTGCAACTTCAGGGGGATACGATCTGCTATCTTCAGT
1 CTACTCCACTGCAACTTCAGGGAGATAAGATCTGCAATCTTCAGT
* *
49135249 CTGCTCCACTGCAACTTCAGGGAGATAAGA-CTTGCAATTTTCAG
1 CTACTCCACTGCAACTTCAGGGAGATAAGATC-TGCAATCTTCAG
49135293 CCTGTTACCT
Statistics
Matches: 73, Mismatches: 13, Indels: 5
0.80 0.14 0.05
Matches are distributed among these distances:
43 3 0.04
44 27 0.37
45 43 0.59
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.29
Consensus pattern (45 bp):
CTACTCCACTGCAACTTCAGGGAGATAAGATCTGCAATCTTCAGT
Found at i:49135345 original size:89 final size:87
Alignment explanation
Indices: 49135248--49135527 Score: 323
Period size: 89 Copynumber: 3.3 Consensus size: 87
49135238 CTATCTTCAG
* *
49135248 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCAATTTTCAGCCTGTTACCTTACTACTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCAATCTTCAGCCTGTTACCCTACTACTTAA
*
49135313 GGGATTAAGGCTTATTGTCTTCGA
66 GGG-TTAAGGCTTGTT-TCTTCGA
* * **
49135337 TTTACTCCACTGCAACTTCAGGGAGATAAGA-TCTAAAATCTTCAGCCTGTTACCCTACTACTTA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACT-TGCAATCTTCAGCCTGTTACCCTACTACTTA
*
49135401 GGGGGTTAAGGCTTGTTTTCTTCGA
65 -AGGGTTAAGGCTTG-TTTCTTCGA
*
49135426 TCTGCTCCACTGGAGA---C---GAGAT----C-TGCAATCTTCAGCCTGTTACCCTACTACTTA
1 TCTGCTCCACTGCA-ACTTCAGGGAGATAAGACTTGCAATCTTCAGCCTGTTACCCTACTACTTA
*
49135480 GAGGGTTAAGGCTTGCTTCTTCGA
65 -AGGGTTAAGGCTTGTTTCTTCGA
49135504 TCTGCTCCACTGCAACTTCAGGGA
1 TCTGCTCCACTGCAACTTCAGGGA
49135528 TTCAAGATCT
Statistics
Matches: 164, Mismatches: 16, Indels: 28
0.79 0.08 0.13
Matches are distributed among these distances:
77 1 0.01
78 21 0.13
79 43 0.26
80 1 0.01
83 2 0.01
84 5 0.03
87 1 0.01
88 1 0.01
89 83 0.51
90 6 0.04
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.32
Consensus pattern (87 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCAATCTTCAGCCTGTTACCCTACTACTTAA
GGGTTAAGGCTTGTTTCTTCGA
Found at i:49138627 original size:79 final size:81
Alignment explanation
Indices: 49138459--49138643 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
49138449 GCTACTTGTT
*
49138459 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACATAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
49138523 GATTTAGTAACTCGCAC
65 GATATAGTAACTAGCAC
* * * **
49138540 CAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTTGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAAGCCTTCGGGACATAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* *
49138602 GATATGGTCACTTAGCA-
65 GATATAGTAAC-TAGCAC
49138619 CAAAGCCTTCGGGACATAGCCCGGA
1 CAAAGCCTTCGGGACATAGCCCGGA
49138644 CATCATTCGA
Statistics
Matches: 88, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 58 0.66
80 24 0.27
81 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAAGCCTTCGGGACATAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTAGCAC
Found at i:49138643 original size:40 final size:40
Alignment explanation
Indices: 49138459--49138643 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
49138449 GCTACTTGTT
* *
49138459 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
49138499 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
49138539 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
49138578 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
*
49138619 CAAA-GCCTTCGGGACATAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
49138644 CATCATTCGA
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 79 0.64
41 12 0.10
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:49139847 original size:56 final size:56
Alignment explanation
Indices: 49139780--49139899 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
49139770 TATTAGTTTA
49139780 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
49139836 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
49139892 TTGCCCAT
1 TTGCCCAT
49139900 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:49146502 original size:39 final size:40
Alignment explanation
Indices: 49146388--49146572 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
49146378 GCTACTCGTT
*
49146388 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
49146428 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
49146468 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
49146507 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
49146548 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
49146573 CATCATTCGA
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 78 0.62
41 13 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:49146532 original size:79 final size:81
Alignment explanation
Indices: 49146355--49146572 Score: 227
Period size: 79 Copynumber: 2.7 Consensus size: 81
49146345 AAATCACGTA
* * * * * * *
49146355 CCTTCGGAATTTAA-CCAGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTAT
1 CCTTCGGGACTTAACCCGGATATAG-TAACTCGTACCAATGCCTTCGGGACTTAGCCCGGAATAT
49146417 AGTAACTCGCACAAATG
65 AGTAACTCGCACAAATG
*
49146434 CCTTCGGGACTTAACCCGGATTTAGTAACTCGTACCAATGCCTTCGGG-CTTAGCCCGGAAT-TA
1 CCTTCGGGACTTAACCCGGATATAGTAACTCGTACCAATGCCTTCGGGACTTAGCCCGGAATATA
49146497 GTAACTCGCACAAATG
66 GTAACTCGCACAAATG
** * * *
49146513 CCTTC-GGATCTTAGTCCGGATATGGTCACT--TAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTAACCCGGATATAGTAACTCGTA-C-CAATGCCTTCGGGACTTAGCCCGGA
49146573 CATCATTCGA
Statistics
Matches: 118, Mismatches: 14, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
77 2 0.02
78 4 0.03
79 73 0.62
80 39 0.33
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (81 bp):
CCTTCGGGACTTAACCCGGATATAGTAACTCGTACCAATGCCTTCGGGACTTAGCCCGGAATATA
GTAACTCGCACAAATG
Found at i:49147775 original size:56 final size:56
Alignment explanation
Indices: 49147708--49147827 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
49147698 TATTAGTTTA
*
49147708 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGCT
*
49147764 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGCT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGCT
49147820 TTGCCCAT
1 TTGCCCAT
49147828 CATCCCTTGT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.23, C:0.24, G:0.09, T:0.44
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGCT
Found at i:49155468 original size:129 final size:130
Alignment explanation
Indices: 49155318--49155562 Score: 357
Period size: 129 Copynumber: 1.9 Consensus size: 130
49155308 GTGAAATTCT
* * * *
49155318 AAAGGGATATTCGATTATTTTGAACAAATAGGAAATCGCAACCCAACACGGTAGGACACGATTCC
1 AAAGGAATATTCAATTATTTTGAACAAACAGGAAATCGCAACCCAACACGATAGGACACGATTCC
* * *
49155383 CCGAATTGCCTAACATCGAACTTTACCTTCG-TTTAAAGAATTTTTAAATGAATAGTGAAAAACC
66 CCGAATTGCCAAACATCCAACATTACCTTCGTTTTAAAGAATTTTTAAATGAATAGTGAAAAACC
* * * * *
49155447 AAAGGAATATTCAATTATTTTGAACAAGCGGGAAATTGCAACCCATCACGATAGGGCACGATTCC
1 AAAGGAATATTCAATTATTTTGAACAAACAGGAAATCGCAACCCAACACGATAGGACACGATTCC
* *
49155512 CCGAATTGCCAAACATCCAACATTGCCTTCGTTTTTAAGAATTTTTAAATG
66 CCGAATTGCCAAACATCCAACATTACCTTCGTTTTAAAGAATTTTTAAATG
49155563 GATAATTATA
Statistics
Matches: 101, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
129 83 0.82
130 18 0.18
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.27
Consensus pattern (130 bp):
AAAGGAATATTCAATTATTTTGAACAAACAGGAAATCGCAACCCAACACGATAGGACACGATTCC
CCGAATTGCCAAACATCCAACATTACCTTCGTTTTAAAGAATTTTTAAATGAATAGTGAAAAACC
Found at i:49160167 original size:31 final size:31
Alignment explanation
Indices: 49160124--49160228 Score: 140
Period size: 31 Copynumber: 3.4 Consensus size: 31
49160114 CTATGGCATC
*
49160124 CATAA-AGATAGTCCGTTAGGACAATAAACA
1 CATAATAGATAGTCCGTTGGGACAATAAACA
*
49160154 CATAATAGGTAGTCCGTTGGGACAATAAACA
1 CATAATAGATAGTCCGTTGGGACAATAAACA
* * **
49160185 TAGAATAGATAGTTTGTTGGGACAATAAACA
1 CATAATAGATAGTCCGTTGGGACAATAAACA
*
49160216 CAAAATAGATAGT
1 CATAATAGATAGT
49160229 TTTTGAGACA
Statistics
Matches: 65, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
30 5 0.08
31 60 0.92
ACGTcount: A:0.44, C:0.12, G:0.20, T:0.24
Consensus pattern (31 bp):
CATAATAGATAGTCCGTTGGGACAATAAACA
Found at i:49160229 original size:31 final size:31
Alignment explanation
Indices: 49160142--49160243 Score: 134
Period size: 31 Copynumber: 3.3 Consensus size: 31
49160132 TAGTCCGTTA
* * **
49160142 GGACAATAAACACATAATAGGTAGTCCGTTG
1 GGACAATAAACACAAAATAGATAGTTTGTTG
* *
49160173 GGACAATAAACATAGAATAGATAGTTTGTTG
1 GGACAATAAACACAAAATAGATAGTTTGTTG
49160204 GGACAATAAACACAAAATAGATAGTTT-TTG
1 GGACAATAAACACAAAATAGATAGTTTGTTG
*
49160234 AGACAATAAA
1 GGACAATAAA
49160244 TATAGAACAA
Statistics
Matches: 63, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
30 12 0.19
31 51 0.81
ACGTcount: A:0.45, C:0.11, G:0.20, T:0.25
Consensus pattern (31 bp):
GGACAATAAACACAAAATAGATAGTTTGTTG
Found at i:49160258 original size:30 final size:31
Alignment explanation
Indices: 49160143--49160259 Score: 119
Period size: 31 Copynumber: 3.8 Consensus size: 31
49160133 AGTCCGTTAG
* * * ** *
49160143 GACAATAAACACATAATAGGTAGTCCGTTGG
1 GACAATAAACATAGAATAGATAGTTTGTTGA
*
49160174 GACAATAAACATAGAATAGATAGTTTGTTGG
1 GACAATAAACATAGAATAGATAGTTTGTTGA
* *
49160205 GACAATAAACACAAAATAGATAGTTT-TTGA
1 GACAATAAACATAGAATAGATAGTTTGTTGA
* * *
49160235 GACAATAAATATAGAACAAATAGTT
1 GACAATAAACATAGAATAGATAGTT
49160260 CATCGGAATA
Statistics
Matches: 73, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
30 23 0.32
31 50 0.68
ACGTcount: A:0.46, C:0.10, G:0.18, T:0.26
Consensus pattern (31 bp):
GACAATAAACATAGAATAGATAGTTTGTTGA
Found at i:49160259 original size:61 final size:62
Alignment explanation
Indices: 49160142--49160259 Score: 157
Period size: 61 Copynumber: 1.9 Consensus size: 62
49160132 TAGTCCGTTA
* * * * *
49160142 GGACAATAAACACATAATAGGTAGTCCGTTGGGACAATAAACATAGAATAGATAGTTTGTTG
1 GGACAATAAACACAAAATAGATAGTCCGTTGAGACAATAAACATAGAACAAATAGTTTGTTG
** *
49160204 GGACAATAAACACAAAATAGATAGT-TTTTGAGACAATAAATATAGAACAAATAGTT
1 GGACAATAAACACAAAATAGATAGTCCGTTGAGACAATAAACATAGAACAAATAGTT
49160260 CATCGGAATA
Statistics
Matches: 48, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
61 25 0.52
62 23 0.48
ACGTcount: A:0.46, C:0.10, G:0.19, T:0.25
Consensus pattern (62 bp):
GGACAATAAACACAAAATAGATAGTCCGTTGAGACAATAAACATAGAACAAATAGTTTGTTG
Found at i:49165562 original size:49 final size:49
Alignment explanation
Indices: 49165453--49165566 Score: 131
Period size: 49 Copynumber: 2.3 Consensus size: 49
49165443 CTTGGTACTC
* * * *
49165453 AGTGCCTAGGTGTGTTTCGGAGGGATGCTAGCTTATGGGCTTGACACTT
1 AGTGCCTAGGTGTGTTTCAGAAGGATGCTAGCCTATGGGCTTGACACTG
* * * *
49165502 AGTTCCTAGGTGTGTTTTAGAAGGATGTTAGCCTATGGGCTTGGCACCTG
1 AGTGCCTAGGTGTGTTTCAGAAGGATGCTAGCCTATGGGCTTGACA-CTG
*
49165552 A-TGCCGAGGTGTGTT
1 AGTGCCTAGGTGTGTT
49165567 CTCGGTTGGA
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
49 51 0.94
50 3 0.06
ACGTcount: A:0.17, C:0.16, G:0.34, T:0.33
Consensus pattern (49 bp):
AGTGCCTAGGTGTGTTTCAGAAGGATGCTAGCCTATGGGCTTGACACTG
Found at i:49166746 original size:22 final size:22
Alignment explanation
Indices: 49166707--49166749 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
49166697 ATCACTCTTC
* *
49166707 CTCTCCTTTTATTTTTCTTTTT
1 CTCTCCATTTATTATTCTTTTT
*
49166729 CTCTCCATTTGTTATTCTTTT
1 CTCTCCATTTATTATTCTTTT
49166750 CTTCTTCTGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.07, C:0.23, G:0.02, T:0.67
Consensus pattern (22 bp):
CTCTCCATTTATTATTCTTTTT
Found at i:49180013 original size:30 final size:30
Alignment explanation
Indices: 49179979--49180039 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
49179969 TCCTTAACTC
49179979 AAACTTTAGAAAAATTACAATTTTGCCCCT
1 AAACTTTAGAAAAATTACAATTTTGCCCCT
* * * * *
49180009 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTAGAAAAATTACAATTTTGCCCCT
49180039 A
1 A
49180040 GGCTCGGAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.38
Consensus pattern (30 bp):
AAACTTTAGAAAAATTACAATTTTGCCCCT
Found at i:49188872 original size:29 final size:29
Alignment explanation
Indices: 49188809--49188876 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
49188799 TAATCAACCG
49188809 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
49188838 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
49188867 CGCACACTTA
1 CGCACACTTA
49188877 CCTTTCCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:49188989 original size:174 final size:174
Alignment explanation
Indices: 49188698--49189025 Score: 575
Period size: 174 Copynumber: 1.9 Consensus size: 174
49188688 AACTCAAGGT
* ** *
49188698 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTCCCGCTGTCCAAAACCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
49188763 GAAAATATATATTGGGTTCGTACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
49188828 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
49188872 ACTTACCTTTCCCGCTGTCCAAAACCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTCCCGCTGTCCAAAACCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
49188937 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
*
49189002 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
49189026 TGTACAATTT
Statistics
Matches: 145, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
174 145 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTCCCGCTGTCCAAAACCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:49189017 original size:29 final size:30
Alignment explanation
Indices: 49188978--49189056 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
49188968 CTTAATAATC
49188978 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
49189008 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
49189037 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
49189057 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:49198110 original size:27 final size:27
Alignment explanation
Indices: 49198071--49198275 Score: 250
Period size: 27 Copynumber: 7.6 Consensus size: 27
49198061 ATTTTTAGTC
* * *
49198071 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAAAT
*
49198098 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
49198125 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
*
49198152 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAA-T
** ** *
49198180 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAAAT
* **
49198207 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAAAT
* *
49198234 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
49198261 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
49198276 GTACAATTTA
Statistics
Matches: 157, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
27 133 0.85
28 24 0.15
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAAAT
Found at i:49206101 original size:27 final size:27
Alignment explanation
Indices: 49206071--49206248 Score: 151
Period size: 27 Copynumber: 6.6 Consensus size: 27
49206061 ATATTGAGCC
** *
49206071 CGCACACTCGGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
49206098 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
49206125 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
49206153 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
49206180 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
49206207 CGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
49206234 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
49206249 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 99 0.80
28 24 0.20
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:49206212 original size:82 final size:81
Alignment explanation
Indices: 49206092--49206247 Score: 206
Period size: 82 Copynumber: 1.9 Consensus size: 81
49206082 TGCTATATAA
* * * *
49206092 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCA-AATCGCA
49206157 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
49206174 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTGAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCA
*
49206238 CCCTTAGTGC
65 CACTTAGTGC
49206248 TGTACAATTT
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 17 0.27
82 47 0.73
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:49211168 original size:21 final size:21
Alignment explanation
Indices: 49211142--49211181 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
49211132 CTTTTAGGCT
49211142 AATCCCACACGTCCATGTGGA
1 AATCCCACACGTCCATGTGGA
*
49211163 AATCCCACGCGTCCATGTG
1 AATCCCACACGTCCATGTG
49211182 TGATAGCTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.25, C:0.35, G:0.20, T:0.20
Consensus pattern (21 bp):
AATCCCACACGTCCATGTGGA
Found at i:49213814 original size:23 final size:25
Alignment explanation
Indices: 49213758--49213814 Score: 61
Period size: 20 Copynumber: 2.4 Consensus size: 25
49213748 AAATATTTAA
49213758 AATTAAATTTTTGAAAATATATTTTTT
1 AATT-AATTTTTG-AAATATATTTTTT
49213785 AA-T--TTTTTG-AAT-TATTTTTT
1 AATTAATTTTTGAAATATATTTTTT
49213805 AATTAATTTT
1 AATTAATTTT
49213815 AAATAAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 10
0.73 0.00 0.27
Matches are distributed among these distances:
20 10 0.37
21 4 0.15
23 10 0.37
26 1 0.04
27 2 0.07
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (25 bp):
AATTAATTTTTGAAATATATTTTTT
Found at i:49219812 original size:49 final size:49
Alignment explanation
Indices: 49219759--49219940 Score: 173
Period size: 49 Copynumber: 3.8 Consensus size: 49
49219749 ACATCTAAGT
49219759 CGATGCCATGTCCCAGATAGGTCTTACACTAACTTACATACATCAAGGC
1 CGATGCCATGTCCCAGATAGGTCTTACACTAACTTACATACATCAAGGC
* * * ** * * *
49219808 CGATGCCATGCCCCAGAGAAGTCTTACACTGGCTCT-CACT-TATC-TGTGT
1 CGATGCCATGTCCCAGATAGGTCTTACACTAACT-TACA-TACATCAAG-GC
* *
49219857 CGATGCCATGTCCCAGACAGGTCTTACACTAAC--AC--ACCTCAA-GC
1 CGATGCCATGTCCCAGATAGGTCTTACACTAACTTACATACATCAAGGC
* *
49219901 CGATGCCATGTCCCAGATATGTCTTACACTAACTTGCATA
1 CGATGCCATGTCCCAGATAGGTCTTACACTAACTTACATA
49219941 TCTTGATTTC
Statistics
Matches: 103, Mismatches: 20, Indels: 21
0.72 0.14 0.15
Matches are distributed among these distances:
44 32 0.31
45 2 0.02
46 1 0.01
47 1 0.01
48 2 0.02
49 63 0.61
50 2 0.02
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.25
Consensus pattern (49 bp):
CGATGCCATGTCCCAGATAGGTCTTACACTAACTTACATACATCAAGGC
Found at i:49219954 original size:93 final size:95
Alignment explanation
Indices: 49219734--49219977 Score: 275
Period size: 93 Copynumber: 2.6 Consensus size: 95
49219724 CAAACATAGC
** ** *
49219734 CTTACACTGGCTCTCAC-ATCTAAGTCGATGCCATGTCCCAGATAGGTCTTACACTAACTTACAT
1 CTTACACTAACTCTCACTATCTGTGTCGATGCCATGTCCCAGACAGGTCTTACACTAAC-TACA-
49219798 ACATCAAGGCCGATGCCATGCCCCAGAGAAGT
64 ACATCAAGGCCGATGCCATGCCCCAGAGAAGT
**
49219830 CTTACACTGGCTCTCACTTATCTGTGTCGATGCCATGTCCCAGACAGGTCTTACACTAAC-AC-A
1 CTTACACTAACTCTCAC-TATCTGTGTCGATGCCATGTCCCAGACAGGTCTTACACTAACTACAA
* * * *
49219893 CCTCAA-GCCGATGCCATGTCCCAGATATGT
65 CATCAAGGCCGATGCCATGCCCCAGAGAAGT
* *
49219923 CTTACACTAACT-TGCA-TATCTTGATTTCGATGCGATGTCCCAGACAGGTCTTACA
1 CTTACACTAACTCT-CACTATC-TG-TGTCGATGCCATGTCCCAGACAGGTCTTACA
49219978 ATGGCTCTCA
Statistics
Matches: 132, Mismatches: 11, Indels: 13
0.85 0.07 0.08
Matches are distributed among these distances:
91 4 0.03
92 3 0.02
93 62 0.47
94 6 0.05
96 19 0.14
98 38 0.29
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27
Consensus pattern (95 bp):
CTTACACTAACTCTCACTATCTGTGTCGATGCCATGTCCCAGACAGGTCTTACACTAACTACAAC
ATCAAGGCCGATGCCATGCCCCAGAGAAGT
Found at i:49220002 original size:49 final size:49
Alignment explanation
Indices: 49219808--49220026 Score: 166
Period size: 49 Copynumber: 4.6 Consensus size: 49
49219798 ACATCAAGGC
* * * * * *
49219808 CGATGCCATGCCCCAGAGAAGTCTTACACTGGCTCTCACTTATCTGTGT
1 CGATGCCATGTCCCAGACAGGTCTTACAATGGCTCTCACATATCTGTAT
* * * ** *
49219857 CGATGCCATGTCCCAGACAGGTCTTAC-A-----CTAACACACCTCAAGC
1 CGATGCCATGTCCCAGACAGGTCTTACAATGGCTCTCACATATCTGTA-T
* * * ** * *
49219901 CGATGCCATGTCCCAGATATGTCTTACACTAACT-T-GCATATCTTGATTT
1 CGATGCCATGTCCCAGACAGGTCTTACAATGGCTCTCACATATC-TG-TAT
*
49219950 CGATGCGATGTCCCAGACAGGTCTTACAATGGCTCTCACATATCTGTAT
1 CGATGCCATGTCCCAGACAGGTCTTACAATGGCTCTCACATATCTGTAT
*
49219999 CGATGCCATGTCCCAGACAGGTTTTACA
1 CGATGCCATGTCCCAGACAGGTCTTACA
49220027 CTGACACATA
Statistics
Matches: 127, Mismatches: 32, Indels: 22
0.70 0.18 0.12
Matches are distributed among these distances:
43 7 0.06
44 25 0.20
48 4 0.03
49 82 0.65
50 3 0.02
51 6 0.05
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACAGGTCTTACAATGGCTCTCACATATCTGTAT
Found at i:49220015 original size:142 final size:142
Alignment explanation
Indices: 49219759--49220034 Score: 392
Period size: 142 Copynumber: 1.9 Consensus size: 142
49219749 ACATCTAAGT
49219759 CGATGCCATGTCCCAGATAGGTCTTACACTAACTTACATACATCAAGGCCGATGCCATGCCCCAG
1 CGATGCCATGTCCCAGATAGGTCTTACACTAACTTACATACATCAAGGCCGATGCCATGCCCCAG
* * * *
49219824 AGAAGTCTTACACTGGCTCTCACTTATCTGTGTCGATGCCATGTCCCAGACAGGTCTTACACTAA
66 ACAAGTCTTACAATGGCTCTCACATATCTGTATCGATGCCATGTCCCAGACAGGTCTTACACTAA
49219889 CACACCTCAAGC
131 CACACCTCAAGC
* * ** *** * *
49219901 CGATGCCATGTCCCAGATATGTCTTACACTAACTTGCATATC-TTGATTTCGATGCGATGTCCCA
1 CGATGCCATGTCCCAGATAGGTCTTACACTAACTTACATA-CATCAAGGCCGATGCCATGCCCCA
* * *
49219965 GACAGGTCTTACAATGGCTCTCACATATCTGTATCGATGCCATGTCCCAGACAGGTTTTACACTG
65 GACAAGTCTTACAATGGCTCTCACATATCTGTATCGATGCCATGTCCCAGACAGGTCTTACACTA
49220030 ACACA
130 ACACA
49220035 TACATCACCC
Statistics
Matches: 117, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
142 116 0.99
143 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (142 bp):
CGATGCCATGTCCCAGATAGGTCTTACACTAACTTACATACATCAAGGCCGATGCCATGCCCCAG
ACAAGTCTTACAATGGCTCTCACATATCTGTATCGATGCCATGTCCCAGACAGGTCTTACACTAA
CACACCTCAAGC
Found at i:49221102 original size:14 final size:14
Alignment explanation
Indices: 49221083--49221112 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
49221073 GAGCTCCTAA
49221083 TCGCTAAAATTAAT
1 TCGCTAAAATTAAT
49221097 TCGCTAAAATTAAT
1 TCGCTAAAATTAAT
49221111 TC
1 TC
49221113 ACCAAAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.37
Consensus pattern (14 bp):
TCGCTAAAATTAAT
Found at i:49221119 original size:14 final size:14
Alignment explanation
Indices: 49221088--49221121 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
49221078 CCTAATCGCT
* *
49221088 AAAATTAATTCGCT
1 AAAATTAATTCACC
49221102 AAAATTAATTCACC
1 AAAATTAATTCACC
49221116 AAAATT
1 AAAATT
49221122 TTCATGCATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.50, C:0.15, G:0.03, T:0.32
Consensus pattern (14 bp):
AAAATTAATTCACC
Found at i:49227584 original size:49 final size:48
Alignment explanation
Indices: 49227434--49227704 Score: 266
Period size: 49 Copynumber: 5.6 Consensus size: 48
49227424 CGATGCTGAC
* * **
49227434 GCCATGTTCCAAACATGGTCTTACACTGGCTCTCAC-ATCTAAGTCGAT
1 GCCATGTCCCAGACA-GGTCTTACACTGGCTCTCACTATCTGGGTCGAT
* * * * * * *
49227482 GCCATGTCCCAAATAGGCCTTACACTGACT-T-AC-ATACATCGAGGCCAAC
1 GCCATGTCCCAGACAGGTCTTACACTGGCTCTCACTAT-C-T-G-GGTCGAT
* *
49227531 GCCATGTCCCAGACAGGTCTTACACTGGCTCTCACTTATCTGTGCCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTCTCAC-TATCTGGGTCGAT
*
49227580 GCCATGTCCCAGACAGGTCTTACACTAGCT-TGCA-TATCTTGAGGTCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTCT-CACTATC-TG-GGTCGAT
* *
49227629 GCCATGTCCCAGACCGGTCTTACACTGGCTCTCACTTATCTGTGTCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTCTCAC-TATCTGGGTCGAT
49227678 GCCATGTCCCAGACAGGTCTTACACTG
1 GCCATGTCCCAGACAGGTCTTACACTG
49227705 ACATACACAT
Statistics
Matches: 186, Mismatches: 23, Indels: 27
0.79 0.10 0.11
Matches are distributed among these distances:
45 4 0.02
46 2 0.01
47 18 0.10
48 16 0.09
49 131 0.70
50 5 0.03
51 7 0.04
52 1 0.01
53 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.27
Consensus pattern (48 bp):
GCCATGTCCCAGACAGGTCTTACACTGGCTCTCACTATCTGGGTCGAT
Found at i:49227602 original size:98 final size:98
Alignment explanation
Indices: 49227432--49227711 Score: 370
Period size: 98 Copynumber: 2.9 Consensus size: 98
49227422 TGCGATGCTG
* * ** *
49227432 ACGCCATGTTCCAAACATGGTCTTACACTGGCTCTCAC--ATCTAAGTCGATGCCATGTCCCAAA
1 ACGCCATGTCCCAGACA-GGTCTTACACTGGCTCTCACTTATCTGTGTCGATGCCATGTCCCAGA
* *
49227495 TAGGCCTTACACTGACTTACATA-CATCGAGGCCA
65 CAGGTCTTACACTGACTTACATATC-TCGAGGCCA
*
49227529 ACGCCATGTCCCAGACAGGTCTTACACTGGCTCTCACTTATCTGTGCCGATGCCATGTCCCAGAC
1 ACGCCATGTCCCAGACAGGTCTTACACTGGCTCTCACTTATCTGTGTCGATGCCATGTCCCAGAC
* * * *
49227594 AGGTCTTACACT-AGCTTGCATATCTTGAGGTCG
66 AGGTCTTACACTGA-CTTACATATCTCGAGGCCA
* *
49227627 ATGCCATGTCCCAGACCGGTCTTACACTGGCTCTCACTTATCTGTGTCGATGCCATGTCCCAGAC
1 ACGCCATGTCCCAGACAGGTCTTACACTGGCTCTCACTTATCTGTGTCGATGCCATGTCCCAGAC
*
49227692 AGGTCTTACACTGACATACA
66 AGGTCTTACACTGACTTACA
49227712 CATCACCCAA
Statistics
Matches: 161, Mismatches: 17, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
96 20 0.12
97 16 0.10
98 123 0.76
99 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (98 bp):
ACGCCATGTCCCAGACAGGTCTTACACTGGCTCTCACTTATCTGTGTCGATGCCATGTCCCAGAC
AGGTCTTACACTGACTTACATATCTCGAGGCCA
Found at i:49230526 original size:151 final size:151
Alignment explanation
Indices: 49230252--49230556 Score: 574
Period size: 151 Copynumber: 2.0 Consensus size: 151
49230242 CTTCTTACAA
49230252 TAGTGAAACCTTTTGTCTCGCTTCTTTGGTGCTACCAAAACAAAAGCTTGCTTTCTGCCTTACTA
1 TAGTGAAACCTTTTGTCTCGCTTCTTTGGTGCTACCAAAACAAAAGCTTGCTTTCTGCCTTACTA
*
49230317 TCCAAACCAAACTCATTGTCGAGTTTGTTTCTACTCAACAAATGACCCTTCATATCTTTGAATGA
66 TCCAAACCAAACTCATTGTCGAGTTTGTCTCTACTCAACAAATGACCCTTCATATCTTTGAATGA
*
49230382 GAGTTTATCTTTGCCATAAAT
131 GAGTTTATCTTTACCATAAAT
*
49230403 TAGTGAAACCTTTTGTCTCGCTTCTTTGGTGCTACCAAAACAATAGCTTGCTTTCTGCCTTACTA
1 TAGTGAAACCTTTTGTCTCGCTTCTTTGGTGCTACCAAAACAAAAGCTTGCTTTCTGCCTTACTA
*
49230468 TCCAAACCAAACTCATTGTCGAGTTTGTCTCTACTCAGCAAATGACCCTTCATATCTTTGAATGA
66 TCCAAACCAAACTCATTGTCGAGTTTGTCTCTACTCAACAAATGACCCTTCATATCTTTGAATGA
49230533 GAGTTTATCTTTACCATAAAT
131 GAGTTTATCTTTACCATAAAT
49230554 TAG
1 TAG
49230557 GGTCTCCTTG
Statistics
Matches: 150, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
151 150 1.00
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.36
Consensus pattern (151 bp):
TAGTGAAACCTTTTGTCTCGCTTCTTTGGTGCTACCAAAACAAAAGCTTGCTTTCTGCCTTACTA
TCCAAACCAAACTCATTGTCGAGTTTGTCTCTACTCAACAAATGACCCTTCATATCTTTGAATGA
GAGTTTATCTTTACCATAAAT
Found at i:49236004 original size:29 final size:29
Alignment explanation
Indices: 49235941--49236008 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
49235931 TAATCAACCG
49235941 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
49235970 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
49235999 CGCACACTTA
1 CGCACACTTA
49236009 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:49236121 original size:174 final size:174
Alignment explanation
Indices: 49235830--49236157 Score: 602
Period size: 174 Copynumber: 1.9 Consensus size: 174
49235820 AACTCAAGGT
* *
49235830 ACTTACCTTTTCCGCTGTCTAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
49235895 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
49235960 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
49236004 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
49236069 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
*
49236134 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
49236158 TGTACAATTT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:49236149 original size:29 final size:30
Alignment explanation
Indices: 49236110--49236188 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
49236100 CTTAATAATC
49236110 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
49236140 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
49236169 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
49236189 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:49244083 original size:29 final size:29
Alignment explanation
Indices: 49244020--49244087 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
49244010 TAATCAACCG
49244020 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
49244049 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
49244078 CGCACACTTA
1 CGCACACTTA
49244088 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:49244219 original size:174 final size:175
Alignment explanation
Indices: 49243908--49244236 Score: 588
Period size: 174 Copynumber: 1.9 Consensus size: 175
49243898 AACTCAAGGT
* *
49243908 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
49243973 GAAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATG
66 GAAAAATATATATTGCGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATG
49244038 CACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 CACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
49244083 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
49244148 G-AAAATATATATTGCGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATG
66 GAAAAATATATATTGCGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATG
* *
49244212 TACTTTAAACTCGCACACTTAGTGC
131 CACTTTAAACTCACACACTTAGTGC
49244237 TGTACAATTT
Statistics
Matches: 147, Mismatches: 7, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
174 84 0.57
175 63 0.43
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (175 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAAATATATATTGCGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATG
CACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:49244228 original size:29 final size:30
Alignment explanation
Indices: 49244189--49244267 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
49244179 CTTAATAATC
49244189 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
49244219 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
49244248 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
49244268 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:49254228 original size:19 final size:20
Alignment explanation
Indices: 49254187--49254229 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
49254177 TTTACTAAAG
* *
49254187 TTTGTAAAATAGATGGTACT
1 TTTGTAAAATAGATGGAAAT
*
49254207 TTTGTGAAATA-ATGGAAAT
1 TTTGTAAAATAGATGGAAAT
49254226 TTTG
1 TTTG
49254230 GGTTGCTATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.35, C:0.02, G:0.21, T:0.42
Consensus pattern (20 bp):
TTTGTAAAATAGATGGAAAT
Found at i:49254769 original size:48 final size:48
Alignment explanation
Indices: 49254712--49254816 Score: 167
Period size: 48 Copynumber: 2.2 Consensus size: 48
49254702 ATGAGAACTT
*
49254712 GTGTAAGACATGTCTAGGACATGCAT-GAGCCTTGAGATATACAAGCCA
1 GTGTAAGACATGTCTAGGACATGCATCG-GCCTCGAGATATACAAGCCA
* *
49254760 GTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAAGCTA
1 GTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATATACAAGCCA
49254808 GTGTAAGAC
1 GTGTAAGAC
49254817 CTATCTGAGA
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
48 52 0.98
49 1 0.02
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (48 bp):
GTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATATACAAGCCA
Found at i:49254829 original size:48 final size:48
Alignment explanation
Indices: 49254712--49254829 Score: 159
Period size: 48 Copynumber: 2.5 Consensus size: 48
49254702 ATGAGAACTT
*
49254712 GTGTAAGACATGTCT-AGGACATGCATGAGCCTTGAGATATACAAGCCA
1 GTGTAAGACATGTCTGA-GACATGCATGAGCCTCGAGATATACAAGCCA
* *
49254760 GTGTAAGACATGTCTGGGACATGCATCG-GCCTCGAGATATACAAGCTA
1 GTGTAAGACATGTCTGAGACATGCAT-GAGCCTCGAGATATACAAGCCA
* *
49254808 GTGTAAGACCTATCTGAGACAT
1 GTGTAAGACATGTCTGAGACAT
49254830 AGCGTCAGCT
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
48 61 0.98
49 1 0.02
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.24
Consensus pattern (48 bp):
GTGTAAGACATGTCTGAGACATGCATGAGCCTCGAGATATACAAGCCA
Found at i:49254908 original size:49 final size:49
Alignment explanation
Indices: 49254850--49255022 Score: 154
Period size: 49 Copynumber: 3.6 Consensus size: 49
49254840 TGTTATGTGT
* *
49254850 CAGTGTAAGACTTGTCTGGGACATGGCGTCGACAC-CGATAGATGAGAAC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATAGATGAGAAC
* *** * **
49254899 CAGTGTAAGACCTATCTGGGACACATCATCGACCTCGATATATGAGAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAGAAC
* * * * * ** *
49254948 CAGTGTAAGACCTGCCTAGGACATGGCATCAACTTTGAT-G-TGCTAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAGAAC
49254995 CAGTGTAAGACCATGTCTGGGACATGGC
1 CAGTGTAAGACC-TGTCTGGGACATGGC
49255023 GTCAGCATCT
Statistics
Matches: 98, Mismatches: 24, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
47 16 0.16
48 14 0.14
49 68 0.69
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAGAAC
Found at i:49254971 original size:142 final size:143
Alignment explanation
Indices: 49254757--49255025 Score: 309
Period size: 142 Copynumber: 1.9 Consensus size: 143
49254747 GATATACAAG
* * *
49254757 CCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAAGCTAGTGTAAGACCTATC
1 CCAGTGTAAGACATATCTGGGACATGCATCGACCTCGAGATATACAAGCTAGTGTAAGACCTACC
* * * *
49254822 TGAGACATAGCGTCAGCTTGTTATGTG-T-CAGTGTAAGA-CTTGTCTGGGACATGGCGTCGACA
66 TGAGACATAGCATCAACTT-TGATGTGCTACAGTGTAAGACCATGTCTGGGACATGGCGTCGACA
49254884 CCGATAGATGAGAA
130 CCGATAGATGAGAA
* * *
49254898 CCAGTGTAAGACCTATCTGGGACACAT-CATCGACCTCGATATATGA-GAG-TCAGTGTAAGACC
1 CCAGTGTAAGACATATCTGGG--ACATGCATCGACCTCGAGATAT-ACAAGCT-AGTGTAAGACC
* *
49254960 TGCCT-AGGACATGGCATCAACTTTGATGTGCTAGCCAGTGTAAGACCATGTCTGGGACATGGCG
62 TACCTGA-GACATAGCATCAACTTTGATGTGCTA--CAGTGTAAGACCATGTCTGGGACATGGCG
49255024 TC
124 TC
49255026 AGCATCTTAA
Statistics
Matches: 106, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
141 27 0.25
142 45 0.42
143 5 0.05
145 10 0.09
146 19 0.18
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (143 bp):
CCAGTGTAAGACATATCTGGGACATGCATCGACCTCGAGATATACAAGCTAGTGTAAGACCTACC
TGAGACATAGCATCAACTTTGATGTGCTACAGTGTAAGACCATGTCTGGGACATGGCGTCGACAC
CGATAGATGAGAA
Found at i:49263262 original size:49 final size:47
Alignment explanation
Indices: 49263041--49263449 Score: 647
Period size: 47 Copynumber: 8.6 Consensus size: 47
49263031 CCCTTCGGGA
* * * * * *
49263041 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
49263088 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
49263135 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49263182 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
49263229 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49263278 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49263325 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
49263374 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49263423 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
49263450 TATTCAAATA
Statistics
Matches: 340, Mismatches: 18, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
47 201 0.59
49 139 0.41
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:49263279 original size:96 final size:96
Alignment explanation
Indices: 49263041--49263449 Score: 650
Period size: 96 Copynumber: 4.3 Consensus size: 96
49263031 CCCTTCGGGA
* * * * * * *
49263041 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
49263104 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
49263135 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
49263198 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
49263229 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
49263294 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
49263325 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
* *
49263390 ACACTTTCACATTCATCACATTGGCCATTCGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
49263423 CTTATCAC--ATATATACACTTTCACATT
1 CTTATCACATATATATACACTTTCACATT
49263450 TATTCAAATA
Statistics
Matches: 294, Mismatches: 15, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
93 1 0.00
94 91 0.31
96 157 0.53
98 45 0.15
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:49263352 original size:40 final size:44
Alignment explanation
Indices: 49263108--49263437 Score: 336
Period size: 49 Copynumber: 6.9 Consensus size: 44
49263098 ATATACACTT
* *
49263108 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
1 TCACATT-ATCACATCGGCCATTAGGCCTTATCACATATATATA--A
* * *
49263155 TCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTT
1 TCACATT-ATCACATCGGCCATTAGGCCTTATCACATATATATA--A
49263202 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
1 TCACATT-ATCACATCGGCCATTAGGCCTTATCACATATATATA-A
* * * *
49263248 CTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTT
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCACATATATATA--A
49263298 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
1 TCACATT-ATCACATCGGCCATTAGGCCTTATCACATATATATA-A
49263344 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCACATATATATA-A
* *
49263393 CTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCACATATATA
49263438 CACTTTCACA
Statistics
Matches: 259, Mismatches: 17, Indels: 12
0.90 0.06 0.04
Matches are distributed among these distances:
47 129 0.50
49 130 0.50
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (44 bp):
TCACATTATCACATCGGCCATTAGGCCTTATCACATATATATAA
Found at i:49266047 original size:50 final size:52
Alignment explanation
Indices: 49265972--49266085 Score: 169
Period size: 56 Copynumber: 2.2 Consensus size: 52
49265962 ACAAGGGATG
49265972 ATGGGCAAAACATGTCATGAAACA-TG-TAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATTGTTAATGGAAAAATAAAATAAGAAGC
*
49266022 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACA---T-TGTTAATGGAAAAATAAAATAAGAAGC
49266078 ATGGGCAA
1 ATGGGCAA
49266086 TAAACTAATA
Statistics
Matches: 57, Mismatches: 1, Indels: 6
0.89 0.02 0.09
Matches are distributed among these distances:
50 24 0.42
55 2 0.04
56 31 0.54
ACGTcount: A:0.47, C:0.10, G:0.23, T:0.20
Consensus pattern (52 bp):
ATGGGCAAAACATGTCATGAAACATTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:49267645 original size:79 final size:80
Alignment explanation
Indices: 49267509--49267693 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 80
49267499 TCGAATGATG
* *
49267509 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAG-ACCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
*
49267573 TGTGCAAGATACTATT
65 TGTGCAAGATACTATA
* * * **
49267589 TCCGGGCTAAGACCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGACCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATT
* *
49267652 TGTGCGAGTTACTATA
65 TGTGCAAGATACTATA
* *
49267668 ACCGGGCTATGACCCGAAGGCATTTG
1 TCCGGGCTAAGA-CCGAAGGCATTTG
49267694 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
78 1 0.01
79 58 0.64
80 31 0.34
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGACCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCAAGATACTATA
Found at i:49267700 original size:40 final size:40
Alignment explanation
Indices: 49267510--49267693 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 40
49267500 CGAATGATGT
* * * * *
49267510 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTTACTATAA
* * * * **
49267550 CCGGACTAAGATCCGAAGGCATTTGTGCAAGATACTATTT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTATAA
49267590 CCGGGCTAAGA-CCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTATAA
* *
49267628 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTATAA
*
49267669 CCGGGCTATGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTTG
49267694 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
39 32 0.26
40 82 0.67
41 9 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:49267715 original size:79 final size:79
Alignment explanation
Indices: 49267562--49267726 Score: 199
Period size: 79 Copynumber: 2.1 Consensus size: 79
49267552 GGACTAAGAT
** **
49267562 CCGAAGGCATTTGTGCAAGATACTATTTCCGGGCTAAGACCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCAAGATACTATAACCGGGCTAAGACCGAAGGCATTTGAACGAGTTACTAA
*
49267627 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
49267641 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGACCCGAAGGCATTTGAACGAG-TAGCT
1 CCGAAGGCATTTGTGCAAGATACTATAACCGGGCTAAGA-CCGAAGGCATTTGAACGAGTTA-CT
** *
49267705 CTATCC-GGTTAAATT
64 AAATCCGGGTTAAATC
49267720 CCGAAGG
1 CCGAAGG
49267727 TACGTGATTT
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
79 50 0.68
80 23 0.32
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCAAGATACTATAACCGGGCTAAGACCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:49273579 original size:56 final size:56
Alignment explanation
Indices: 49273493--49273667 Score: 334
Period size: 56 Copynumber: 3.1 Consensus size: 56
49273483 ACAAGGGATG
49273493 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
49273549 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGG-AAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
49273604 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
49273660 ATGGGCAA
1 ATGGGCAA
49273668 TAAACTAATA
Statistics
Matches: 117, Mismatches: 1, Indels: 2
0.98 0.01 0.02
Matches are distributed among these distances:
55 55 0.47
56 62 0.53
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:49275191 original size:39 final size:40
Alignment explanation
Indices: 49275091--49275275 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 40
49275081 TCGAATGATG
* * * *
49275091 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTTACTAAT
* * * *
49275130 ATCCAGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAT
*
49275171 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAT
* *
49275210 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAT
* *
49275249 AACCGGGCTATGACCCGAAGGCATTTG
1 -TCCGGGCTAAGACCCGAAGGCATTTG
49275276 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 36 0.30
40 77 0.63
41 9 0.07
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:49275231 original size:79 final size:81
Alignment explanation
Indices: 49275091--49275275 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
49275081 TCGAATGATG
* *
49275091 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCAGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCAGACTAAGATCCGAAGGCATT
49275155 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * * **
49275170 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCAGACTAAGAT-CCGAAGGCA
*
49275232 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
49275250 ACCGGGCTATGACCCGAAGGCATTTG
1 TCCGGGCTAAGACCCGAAGGCATTTG
49275276 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCAGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:49275297 original size:79 final size:79
Alignment explanation
Indices: 49275144--49275308 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
49275134 AGACTAAGAT
* **
49275144 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
49275209 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
49275223 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGACCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
** *
49275286 TCTATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
49275302 CCGAAGG
1 CCGAAGG
49275309 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:49281135 original size:56 final size:56
Alignment explanation
Indices: 49281070--49281245 Score: 316
Period size: 56 Copynumber: 3.1 Consensus size: 56
49281060 ACAAGGGATG
49281070 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
49281126 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAACC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
* * *
49281182 ATGGGTAAAACATGTCATGAAACATGTTGTCTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
49281238 ATGGGCAA
1 ATGGGCAA
49281246 TAAACTAATA
Statistics
Matches: 114, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 114 1.00
ACGTcount: A:0.45, C:0.10, G:0.22, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:49282752 original size:40 final size:39
Alignment explanation
Indices: 49282668--49282852 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 39
49282658 TCGAATGATG
* * *
49282668 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
49282707 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAT
* *
49282748 TCCGGGCTAAGCCCGAAGGCATTTGTGTGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAT
*
49282787 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAT
* *
49282826 AACCGGGCTATGACCCGAAGGCATTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
49282853 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 35 0.29
40 78 0.64
41 9 0.07
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:49282804 original size:79 final size:81
Alignment explanation
Indices: 49282668--49282852 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
49282658 TCGAATGATG
* *
49282668 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
49282732 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
49282747 TTCCGGGCTAAG-CCCGAAGGCATTTGTG-TGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
49282809 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
49282827 ACCGGGCTATGACCCGAAGGCATTTG
1 TCCGGGCTAAGACCCGAAGGCATTTG
49282853 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.64
80 32 0.35
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:49282874 original size:79 final size:79
Alignment explanation
Indices: 49282721--49282885 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
49282711 GGACTAAGAT
* ***
49282721 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
49282786 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
49282800 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGACCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
49282863 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
49282879 CCGAAGG
1 CCGAAGG
49282886 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:49296563 original size:48 final size:48
Alignment explanation
Indices: 49296492--49297034 Score: 978
Period size: 48 Copynumber: 11.3 Consensus size: 48
49296482 TGTACAAGAT
* * *
49296492 AAATATATAAGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
* *
49296540 AAATATATAAGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
49296588 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
49296636 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
* * *
49296684 AAATATGTATGAGATATGTATATTTGGTAAAGCTGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
49296732 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
49296780 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
*
49296828 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATAGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
49296876 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
* *
49296924 AAATATGAATGGGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
49296972 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
*
49297020 AAATATGTAGGAGAT
1 AAATATGTATGAGAT
49297035 GTGTGTATAT
Statistics
Matches: 479, Mismatches: 16, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 479 1.00
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
Found at i:49297229 original size:37 final size:37
Alignment explanation
Indices: 49297179--49297277 Score: 162
Period size: 37 Copynumber: 2.7 Consensus size: 37
49297169 ATATATTCCG
49297179 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCA
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCA
* * *
49297216 GGTAAGACCCGATGACTACGTGTGGAGATTTTTTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCA
*
49297253 GGTAAGACCCGATAACTACGTGTGG
1 GGTAAGACCCGATGACTACGTGTGG
49297278 GGACTATTCG
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 58 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCA
Found at i:49301215 original size:27 final size:27
Alignment explanation
Indices: 49301165--49301424 Score: 285
Period size: 27 Copynumber: 9.7 Consensus size: 27
49301155 CCATTAATCA
* * *
49301165 GTAAAATGACTATTTTTCCTTTATGAG
1 GTAAAATGACTGTTTTGCCCTTATGAG
* * *
49301192 GTAAAATAATTGTTCTGCCCTTATGAG
1 GTAAAATGACTGTTTTGCCCTTATGAG
* * * * *
49301219 TTAAAATAATTGTTTTGCCCTTACGTG
1 GTAAAATGACTGTTTTGCCCTTATGAG
* *
49301246 GTAAAATGACTATTTTGCCCTTATGCG
1 GTAAAATGACTGTTTTGCCCTTATGAG
* *
49301273 GCAAAATGACTGTTCTGCCCTTATGAG
1 GTAAAATGACTGTTTTGCCCTTATGAG
* *
49301300 GTAAAATGACTATTTTGCCCTTA-CATG
1 GTAAAATGACTGTTTTGCCCTTATGA-G
*
49301327 GTAAAATGAC-GTTTTG-CCTTATGAT
1 GTAAAATGACTGTTTTGCCCTTATGAG
*
49301352 GTAAAATGACTGTTTTGCCCTTTTGAG
1 GTAAAATGACTGTTTTGCCCTTATGAG
* *
49301379 GTAAAATGACTATTTTACCCTTAT-ATG
1 GTAAAATGACTGTTTTGCCCTTATGA-G
49301406 GTAAAATGACTGTTTTGCC
1 GTAAAATGACTGTTTTGCC
49301425 TTTTTATGGT
Statistics
Matches: 194, Mismatches: 34, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
25 15 0.08
26 14 0.07
27 165 0.85
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.39
Consensus pattern (27 bp):
GTAAAATGACTGTTTTGCCCTTATGAG
Found at i:49301305 original size:81 final size:81
Alignment explanation
Indices: 49301165--49301424 Score: 344
Period size: 81 Copynumber: 3.2 Consensus size: 81
49301155 CCATTAATCA
* * * * * * *
49301165 GTAAAATGACTATTTTTCCTTTATGAGGTAAAATAATTGTTCTGCCCTTATGAGTTAAAATAATT
1 GTAAAATGACTATTTTGCCCTTATGAGGTAAAATGACTGTTCTGCCCTTATGAGGTAAAATGACT
* *
49301230 GTTTTGCCCTTACGTG
66 ATTTTGCCCTTACATG
* *
49301246 GTAAAATGACTATTTTGCCCTTATGCGGCAAAATGACTGTTCTGCCCTTATGAGGTAAAATGACT
1 GTAAAATGACTATTTTGCCCTTATGAGGTAAAATGACTGTTCTGCCCTTATGAGGTAAAATGACT
49301311 ATTTTGCCCTTACATG
66 ATTTTGCCCTTACATG
* * * *
49301327 GTAAAATGAC-GTTTTG-CCTTATGATGTAAAATGACTGTTTTGCCCTTTTGAGGTAAAATGACT
1 GTAAAATGACTATTTTGCCCTTATGAGGTAAAATGACTGTTCTGCCCTTATGAGGTAAAATGACT
* *
49301390 ATTTTACCCTTATATG
66 ATTTTGCCCTTACATG
*
49301406 GTAAAATGACTGTTTTGCC
1 GTAAAATGACTATTTTGCC
49301425 TTTTTATGGT
Statistics
Matches: 158, Mismatches: 19, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
79 66 0.42
80 11 0.07
81 81 0.51
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.39
Consensus pattern (81 bp):
GTAAAATGACTATTTTGCCCTTATGAGGTAAAATGACTGTTCTGCCCTTATGAGGTAAAATGACT
ATTTTGCCCTTACATG
Found at i:49301449 original size:54 final size:55
Alignment explanation
Indices: 49301229--49301457 Score: 174
Period size: 54 Copynumber: 4.3 Consensus size: 55
49301219 TTAAAATAAT
* * * * *
49301229 TGTTTTGCCCTTACG-TGGTAAAATGACTATTTTGCC-CTT-ATGCGGCAAAAT-GA
1 TGTTTTACCCTTATGATGGTAAAATGACTGTTTTGCCTTTTCAT--GGTAAAATGGA
* * * * *
49301282 CTGTTCTGCCCTTATGA-GGTAAAATGACTATTTTGCCCTTACATGGTAAAAT-GA
1 -TGTTTTACCCTTATGATGGTAAAATGACTGTTTTGCCTTTTCATGGTAAAATGGA
* * *
49301336 CGTTTT-GCCTTATGAT-GTAAAATGACTGTTTTGCCCTTTTGA-GGTAAAAT-GA
1 TGTTTTACCCTTATGATGGTAAAATGACTGTTTTG-CCTTTTCATGGTAAAATGGA
* * * *
49301388 CTATTTTACCCTTAT-ATGGTAAAATGACTGTTTTGCCTTTTTATGGTAAGATGGT
1 -TGTTTTACCCTTATGATGGTAAAATGACTGTTTTGCCTTTTCATGGTAAAATGGA
*
49301443 TGTTTTACCCCTATG
1 TGTTTTACCCTTATG
49301458 TGATGTATGT
Statistics
Matches: 144, Mismatches: 20, Indels: 21
0.78 0.11 0.11
Matches are distributed among these distances:
52 34 0.24
53 22 0.15
54 84 0.58
55 2 0.01
56 2 0.01
ACGTcount: A:0.24, C:0.17, G:0.19, T:0.40
Consensus pattern (55 bp):
TGTTTTACCCTTATGATGGTAAAATGACTGTTTTGCCTTTTCATGGTAAAATGGA
Found at i:49304255 original size:142 final size:145
Alignment explanation
Indices: 49304038--49304297 Score: 332
Period size: 142 Copynumber: 1.8 Consensus size: 145
49304028 CCACATTATA
* * * * *
49304038 AGAGCCAGTGTAAGACATGTCTGGGACATACATCGGTCTCGAGATATGCAAGCTAGTGTAAGACT
1 AGAGCCAGTGTAAGACATATCTGGGACATACATCAGCCTCGAGATATGAAAGCTAGTGTAAGACC
* * * *
49304103 TGTCTGGGACATGGCGTC-AGCTTGTTGTG-T-GCCAATGTAAGACC-TGTCTGGGATATGGCAT
66 TGTCTAGGACATGGCATCAAACTTGATGTGTTAGCCAATGTAAGACCATGTCTGGGATATGGCAT
49304164 CGACACCAATAGATG
131 CGACACCAATAGATG
* * * **
49304179 AGAGCTAGTGTAAGACCTATCTGGGACATGGCATCAGCCTCGATTTATGAAAG-TCAGTGTAAGA
1 AGAGCCAGTGTAAGACATATCTGGGACAT-ACATCAGCCTCGAGATATGAAAGCT-AGTGTAAGA
*
49304243 CCTGTCTAGGACATGGCATCAAATTTGATGTGTTAGCCAATGTAAGACCATGTCT
64 CCTGTCTAGGACATGGCATCAAACTTGATGTGTTAGCCAATGTAAGACCATGTCT
49304298 AGGACATGTG
Statistics
Matches: 98, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
141 27 0.28
142 43 0.44
143 8 0.08
144 1 0.01
145 14 0.14
146 5 0.05
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.27
Consensus pattern (145 bp):
AGAGCCAGTGTAAGACATATCTGGGACATACATCAGCCTCGAGATATGAAAGCTAGTGTAAGACC
TGTCTAGGACATGGCATCAAACTTGATGTGTTAGCCAATGTAAGACCATGTCTGGGATATGGCAT
CGACACCAATAGATG
Found at i:49310645 original size:154 final size:154
Alignment explanation
Indices: 49310362--49310668 Score: 454
Period size: 154 Copynumber: 2.0 Consensus size: 154
49310352 GGGTCACACG
* * * *
49310362 GCCGAAACACACGTCCGTGTCTTAAGCCATGTAACAATCGAAATAGGGACACACAACCATGTCCC
1 GCCGAAACACACGCCCGTGTCTCAAGCCATGTAACAATCAAAATAGGGACACACAACCATGACCC
* * * *
49310427 AGCCCGTGTCTATGCCCGTGTAACTCTCTGAGTTGGGTTACACGGCCAAGCCATACACCTGTGTG
66 AGCCCGTGTCCATGCCCGTGTAACTCTCTGAGTTGGGTCACACGGCCAAGCCACACACCCGTGTG
*
49310492 CTAGGTCGTGTAACACTCGAAATA
131 CTAGGCCGTGTAACACTCGAAATA
* * * ** *
49310516 GCCGAAACACATGCCCGTGTCTCAGGCCATGTAA-ATATTAAAATAGGGACACATGACCCTGACC
1 GCCGAAACACACGCCCGTGTCTCAAGCCATGTAACA-ATCAAAATAGGGACACACAACCATGACC
*
49310580 CAGCCCGTGTCCGTGCCCGTGTAACTCTCTGAGTTGGGTCACACGGCCAAGCCACACACCCGTGT
65 CAGCCCGTGTCCATGCCCGTGTAACTCTCTGAGTTGGGTCACACGGCCAAGCCACACACCCGTGT
49310645 GCTAGGCCGTGTAACACTCGAAAT
130 GCTAGGCCGTGTAACACTCGAAAT
49310669 GGCCTTACAT
Statistics
Matches: 136, Mismatches: 16, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
153 1 0.01
154 135 0.99
ACGTcount: A:0.26, C:0.30, G:0.23, T:0.21
Consensus pattern (154 bp):
GCCGAAACACACGCCCGTGTCTCAAGCCATGTAACAATCAAAATAGGGACACACAACCATGACCC
AGCCCGTGTCCATGCCCGTGTAACTCTCTGAGTTGGGTCACACGGCCAAGCCACACACCCGTGTG
CTAGGCCGTGTAACACTCGAAATA
Found at i:49312035 original size:46 final size:46
Alignment explanation
Indices: 49311967--49312149 Score: 294
Period size: 46 Copynumber: 4.0 Consensus size: 46
49311957 TATATATACA
* * * *
49311967 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
49312013 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
49312059 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
49312105 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
49312150 ATACACTTCC
Statistics
Matches: 129, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 129 1.00
ACGTcount: A:0.25, C:0.32, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:49312214 original size:47 final size:47
Alignment explanation
Indices: 49312123--49312407 Score: 374
Period size: 47 Copynumber: 6.1 Consensus size: 47
49312113 ACACATTTCG
* * * * * * *
49312123 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCA-TGTTCACATTCATCA
**
49312170 CATTGGCCATTCGGCCTTATCATGCATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
*
49312217 CATTGGCCATTCGGCCTTATCACACATTTGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
49312264 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
* * *
49312311 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCATATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
* * * * ** *
49312358 CATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTTATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
49312405 CAT
1 CAT
49312408 AAAATCCTAA
Statistics
Matches: 215, Mismatches: 22, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
46 1 0.00
47 214 1.00
ACGTcount: A:0.25, C:0.29, G:0.11, T:0.35
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
Found at i:49312238 original size:22 final size:22
Alignment explanation
Indices: 49312166--49312287 Score: 65
Period size: 23 Copynumber: 5.3 Consensus size: 22
49312156 TTCCACGTTC
49312166 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
49312188 ATCATGCATAT-G-CATGTTC-ACATT
1 ATCA--CAT-TGGCCA--TTCGGCCTT
49312212 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * *
49312235 ATCACACATTTG-CATGTTC-ACATT
1 AT--CACATTGGCCA--TTCGGCCTT
49312259 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
49312282 ATCACA
1 ATCACA
49312288 CATATGCATG
Statistics
Matches: 74, Mismatches: 10, Indels: 32
0.64 0.09 0.28
Matches are distributed among these distances:
22 19 0.26
23 21 0.28
24 21 0.28
25 13 0.18
ACGTcount: A:0.24, C:0.30, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:49312244 original size:24 final size:24
Alignment explanation
Indices: 49312215--49312290 Score: 70
Period size: 24 Copynumber: 3.2 Consensus size: 24
49312205 TCACATTCAT
49312215 CACATTGGCCATTCGGCCTTATCA
1 CACATTGGCCATTCGGCCTTATCA
* * *
49312239 CACATTTG-CATGTTC--ACAT-TCA
1 CACATTGGCCA--TTCGGCCTTATCA
49312261 TCACATTGGCCATTCGGCCTTATCA
1 -CACATTGGCCATTCGGCCTTATCA
49312286 CACAT
1 CACAT
49312291 ATGCATGTTC
Statistics
Matches: 39, Mismatches: 6, Indels: 14
0.66 0.10 0.24
Matches are distributed among these distances:
22 6 0.15
23 11 0.28
24 16 0.41
25 6 0.15
ACGTcount: A:0.24, C:0.32, G:0.13, T:0.32
Consensus pattern (24 bp):
CACATTGGCCATTCGGCCTTATCA
Found at i:49312265 original size:25 final size:25
Alignment explanation
Indices: 49312235--49312312 Score: 67
Period size: 23 Copynumber: 3.2 Consensus size: 25
49312225 ATTCGGCCTT
49312235 ATCACACATTTGCATGTTCACATTC
1 ATCACACATTTGCATGTTCACATTC
* * *
49312260 AT--CACATTGGCCA--TTCGGCCTT-
1 ATCACACATTTG-CATGTTC-ACATTC
*
49312282 ATCACACATATGCATGTTCACATTC
1 ATCACACATTTGCATGTTCACATTC
49312307 ATCACA
1 ATCACA
49312313 TTGGCCATTC
Statistics
Matches: 39, Mismatches: 7, Indels: 14
0.65 0.12 0.23
Matches are distributed among these distances:
22 5 0.13
23 12 0.31
24 11 0.28
25 11 0.28
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.32
Consensus pattern (25 bp):
ATCACACATTTGCATGTTCACATTC
Found at i:49319459 original size:37 final size:36
Alignment explanation
Indices: 49319393--49319469 Score: 91
Period size: 37 Copynumber: 2.1 Consensus size: 36
49319383 CATTTTTTAT
* *
49319393 TTTCATTTTGGAGAAAACCACATTTATTTCCAAATG
1 TTTCATTTTGGAGAAAACCACAATAATTTCCAAATG
* ** *
49319429 ATTTCATTTTGGAGAAAATCTTAATAATTTCTAAATG
1 -TTTCATTTTGGAGAAAACCACAATAATTTCCAAATG
49319466 TTTC
1 TTTC
49319470 CTATTTTTCC
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
36 4 0.12
37 30 0.88
ACGTcount: A:0.34, C:0.13, G:0.10, T:0.43
Consensus pattern (36 bp):
TTTCATTTTGGAGAAAACCACAATAATTTCCAAATG
Found at i:49319942 original size:28 final size:28
Alignment explanation
Indices: 49319899--49319958 Score: 86
Period size: 28 Copynumber: 2.1 Consensus size: 28
49319889 CTAGACAACT
49319899 CACTAAGGGACAAAGGAG-CCAACCTGTC
1 CACTAAGGGACAAAGGAGCCCAACC-GTC
**
49319927 CACTAAGGGAGGAAGGAGCCCAACCGTC
1 CACTAAGGGACAAAGGAGCCCAACCGTC
49319955 CACT
1 CACT
49319959 TGAAGTGTCC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 23 0.79
29 6 0.21
ACGTcount: A:0.33, C:0.30, G:0.27, T:0.10
Consensus pattern (28 bp):
CACTAAGGGACAAAGGAGCCCAACCGTC
Found at i:49320435 original size:14 final size:14
Alignment explanation
Indices: 49320416--49320445 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
49320406 TCATTGTTTT
49320416 TAATCTAGTTTAAC
1 TAATCTAGTTTAAC
*
49320430 TAATCTATTTTAAC
1 TAATCTAGTTTAAC
49320444 TA
1 TA
49320446 CGAACGCAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.13, G:0.03, T:0.47
Consensus pattern (14 bp):
TAATCTAGTTTAAC
Found at i:49321820 original size:18 final size:18
Alignment explanation
Indices: 49321799--49321834 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
49321789 TATTTTTCCC
*
49321799 TAAAATGAATTTCAAAAA
1 TAAAATCAATTTCAAAAA
*
49321817 TAAAATCAATTTTAAAAA
1 TAAAATCAATTTCAAAAA
49321835 GAAACGAGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.61, C:0.06, G:0.03, T:0.31
Consensus pattern (18 bp):
TAAAATCAATTTCAAAAA
Found at i:49327007 original size:43 final size:42
Alignment explanation
Indices: 49326959--49327078 Score: 141
Period size: 43 Copynumber: 2.8 Consensus size: 42
49326949 ACCAAGATGT
*
49326959 GATTACATGTAAGACCATGTCTGGGATATTGGCATCGCTAATC
1 GATTACATGTAAGACCATGTCTGGGATA-TGGCATCGATAATC
* * * * * *
49327002 GATTACATATAAGACCCTGTTTGGGACAATGGCATCGATATTT
1 GATTACATGTAAGACCATGTCTGGGA-TATGGCATCGATAATC
* *
49327045 GATTACATGTAAGACCATATCTAGGATATGGCAT
1 GATTACATGTAAGACCATGTCTGGGATATGGCAT
49327079 TGTACGAGTT
Statistics
Matches: 63, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
42 7 0.11
43 55 0.87
44 1 0.02
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.31
Consensus pattern (42 bp):
GATTACATGTAAGACCATGTCTGGGATATGGCATCGATAATC
Found at i:49331067 original size:22 final size:22
Alignment explanation
Indices: 49331042--49331086 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
49331032 GTTAGTAAAG
*
49331042 ATGTGGAGTTAGTTGAATTCAT
1 ATGTGCAGTTAGTTGAATTCAT
49331064 ATGTGCAGTTAGTTGAATTCAT
1 ATGTGCAGTTAGTTGAATTCAT
49331086 A
1 A
49331087 AGTCAAATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.29, C:0.07, G:0.24, T:0.40
Consensus pattern (22 bp):
ATGTGCAGTTAGTTGAATTCAT
Found at i:49333094 original size:22 final size:21
Alignment explanation
Indices: 49333060--49333104 Score: 65
Period size: 20 Copynumber: 2.1 Consensus size: 21
49333050 AACTCTAAAA
49333060 TTAAAAAATAAAAATA-AATT
1 TTAAAAAATAAAAATATAATT
49333080 TTAAAAATATGAAAAATATAATT
1 TTAAAAA-AT-AAAAATATAATT
49333103 TT
1 TT
49333105 TTTCTAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 7 0.32
21 2 0.09
22 7 0.32
23 6 0.27
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (21 bp):
TTAAAAAATAAAAATATAATT
Found at i:49341663 original size:31 final size:33
Alignment explanation
Indices: 49341623--49341683 Score: 83
Period size: 31 Copynumber: 1.9 Consensus size: 33
49341613 ATCCTAATTC
49341623 TAAAAA-TTTTAAAGAAATAT-ATAA-AAATACA
1 TAAAAATTTTTAAA-AAATATAATAATAAATACA
*
49341654 TAAATATTTTTAAAAAATATAATAATAAAT
1 TAAAAATTTTTAAAAAATATAATAATAAAT
49341684 TTAAAAATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
31 11 0.42
32 11 0.42
33 4 0.15
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (33 bp):
TAAAAATTTTTAAAAAATATAATAATAAATACA
Found at i:49341674 original size:29 final size:31
Alignment explanation
Indices: 49341623--49341683 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 31
49341613 ATCCTAATTC
49341623 TAAAAATTTTAAAGAAATATATAAAAATACA
1 TAAAAATTTTAAAGAAATATATAAAAATACA
*
49341654 TAAATATTTTTAAA-AAATATAATAATAAAT
1 TAAA-AATTTTAAAGAAATAT-ATAA-AAAT
49341684 TTAAAAATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
31 10 0.38
32 12 0.46
33 4 0.15
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (31 bp):
TAAAAATTTTAAAGAAATATATAAAAATACA
Found at i:49341680 original size:21 final size:22
Alignment explanation
Indices: 49341662--49341704 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
49341652 CATAAATATT
*
49341662 TTTAAAAA-ATATAATAATAAA
1 TTTAAAAATATATAAAAATAAA
49341683 TTTAAAAATATATAAAAATAAA
1 TTTAAAAATATATAAAAATAAA
49341705 AAATATATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (22 bp):
TTTAAAAATATATAAAAATAAA
Found at i:49341700 original size:10 final size:10
Alignment explanation
Indices: 49341637--49341702 Score: 55
Period size: 10 Copynumber: 6.5 Consensus size: 10
49341627 AATTTTAAAG
49341637 AAATATATAA
1 AAATATATAA
*
49341647 AAATACATAA
1 AAATATATAA
* * *
49341657 ATATTTTTAAA
1 AAATATAT-AA
49341668 AAATATAATAA
1 AAATAT-ATAA
49341679 TAAAT-T-TAA
1 -AAATATATAA
49341688 AAATATATAA
1 AAATATATAA
49341698 AAATA
1 AAATA
49341703 AAAAATATAT
Statistics
Matches: 43, Mismatches: 8, Indels: 10
0.70 0.13 0.16
Matches are distributed among these distances:
8 4 0.09
9 4 0.09
10 21 0.49
11 9 0.21
12 5 0.12
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (10 bp):
AAATATATAA
Found at i:49341757 original size:24 final size:24
Alignment explanation
Indices: 49341730--49341793 Score: 80
Period size: 24 Copynumber: 2.7 Consensus size: 24
49341720 AAGAAATCAT
49341730 AATATATAAATTATAAA-A-TTTAAA
1 AATATATAAA--ATAAATATTTTAAA
49341754 AATATATAAAATAAATATTTTAAA
1 AATATATAAAATAAATATTTTAAA
49341778 AA-ATATAATAATAAAT
1 AATATATAA-AATAAAT
49341794 TAAAATATTA
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
22 5 0.14
23 7 0.19
24 25 0.68
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (24 bp):
AATATATAAAATAAATATTTTAAA
Found at i:49341798 original size:18 final size:19
Alignment explanation
Indices: 49341777--49341816 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
49341767 AATATTTTAA
49341777 AAAATATAATAATAA-ATT
1 AAAATATAATAATAATATT
* *
49341795 AAAATATTATATTAATATT
1 AAAATATAATAATAATATT
49341814 AAA
1 AAA
49341817 TAAACTGAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
AAAATATAATAATAATATT
Found at i:49341811 original size:21 final size:20
Alignment explanation
Indices: 49341663--49341798 Score: 73
Period size: 17 Copynumber: 7.3 Consensus size: 20
49341653 ATAAATATTT
49341663 TTAAAAAATATAATAATAAA
1 TTAAAAAATATAATAATAAA
*
49341683 TTTAAAAATAT-ATAA-AAA
1 TTAAAAAATATAATAATAAA
* **
49341701 -TAAAAAATAT-ATTATTGA
1 TTAAAAAATATAATAATAAA
* *
49341719 -CAAGAAATCATAATATATAAA
1 TTAAAAAAT-ATAATA-ATAAA
*
49341740 TTATAAAAT-T--TAA-AAA
1 TTAAAAAATATAATAATAAA
* *
49341756 TATATAAAATA-AAT-AT--T
1 T-TAAAAAATATAATAATAAA
49341773 TTAAAAAATATAATAATAAA
1 TTAAAAAATATAATAATAAA
49341793 TTAAAA
1 TTAAAA
49341799 TATTATATTA
Statistics
Matches: 86, Mismatches: 16, Indels: 28
0.66 0.12 0.22
Matches are distributed among these distances:
16 12 0.14
17 25 0.29
18 15 0.17
19 7 0.08
20 19 0.22
21 3 0.03
22 5 0.06
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.33
Consensus pattern (20 bp):
TTAAAAAATATAATAATAAA
Found at i:49341820 original size:57 final size:53
Alignment explanation
Indices: 49341653--49341820 Score: 157
Period size: 57 Copynumber: 3.0 Consensus size: 53
49341643 ATAAAAATAC
49341653 ATAAATATTTTTAAAAAATATAATAATAAATTTAAAAA-TATAT-AA-AAATAAA
1 ATAAATA-TTTTAAAAAATATAATAATAAA-TTAAAAATTATATAAATAAATAAA
* *
49341705 A-AATATATTATTGACAAGAAATCATAATATATAAATTATAAAATT-TAAAAATATATAAA
1 ATAA-ATATT-TT-A-AA-AAAT-ATAATA-ATAAATTA-AAAATTATATAAATAAATAAA
49341764 ATAAATATTTTAAAAAATATAATAATAAATTAAAATATTATATTAATATTAAATAAA
1 ATAAATATTTTAAAAAATATAATAATAAATTAAAA-ATTATA-TAA-A-TAAATAAA
49341821 CTGAAAATCC
Statistics
Matches: 95, Mismatches: 4, Indels: 29
0.74 0.03 0.23
Matches are distributed among these distances:
51 4 0.04
52 9 0.09
53 12 0.13
54 10 0.11
55 10 0.11
56 12 0.13
57 19 0.20
58 5 0.05
59 12 0.13
60 2 0.02
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.36
Consensus pattern (53 bp):
ATAAATATTTTAAAAAATATAATAATAAATTAAAAATTATATAAATAAATAAA
Found at i:49342284 original size:20 final size:19
Alignment explanation
Indices: 49342236--49342276 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
49342226 TTTTTATAAG
*
49342236 TTTTTCTTC-TA-AAGAAT
1 TTTTTCTTCTTACCAGAAT
49342253 TTTTTCTTCTTACCAGAAT
1 TTTTTCTTCTTACCAGAAT
49342272 TTTTT
1 TTTTT
49342277 TTATCTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 9 0.43
18 2 0.10
19 10 0.48
ACGTcount: A:0.22, C:0.15, G:0.05, T:0.59
Consensus pattern (19 bp):
TTTTTCTTCTTACCAGAAT
Found at i:49343358 original size:9 final size:9
Alignment explanation
Indices: 49343344--49343384 Score: 82
Period size: 9 Copynumber: 4.6 Consensus size: 9
49343334 TCTAAGTTTA
49343344 TAGAATTAT
1 TAGAATTAT
49343353 TAGAATTAT
1 TAGAATTAT
49343362 TAGAATTAT
1 TAGAATTAT
49343371 TAGAATTAT
1 TAGAATTAT
49343380 TAGAA
1 TAGAA
49343385 CTACTACTAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.46, C:0.00, G:0.12, T:0.41
Consensus pattern (9 bp):
TAGAATTAT
Found at i:49354686 original size:39 final size:40
Alignment explanation
Indices: 49354641--49354808 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
49354631 CGGGGTTTAG
* * *
49354641 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
49354680 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
49354720 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
49354760 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
49354801 CCGGATAT
1 CCGGATAT
49354809 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:49354791 original size:41 final size:40
Alignment explanation
Indices: 49354664--49354808 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
49354654 CTCGCACAAG
* * * * *
49354664 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
49354704 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
49354744 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
49354785 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
49354809 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:49356041 original size:38 final size:38
Alignment explanation
Indices: 49355999--49356074 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
49355989 CAAGAACTCC
49355999 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
49356037 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
49356075 AAAGGATGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.32
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
Found at i:49367573 original size:43 final size:43
Alignment explanation
Indices: 49367498--49367605 Score: 157
Period size: 43 Copynumber: 2.5 Consensus size: 43
49367488 GTACCAATGT
**
49367498 AATATCCCAGATATGGTCTTACATGTAATCTCATATCGATGCC
1 AATATCCCAGATATGGTCTTACATCAAATCTCATATCGATGCC
* *
49367541 AATAACCCAGCTATGGTCTTAC-TCAAAGTCTCATATCGATGCC
1 AATATCCCAGATATGGTCTTACATCAAA-TCTCATATCGATGCC
49367584 -ATATCCCAGATATGGTCTTACA
1 AATATCCCAGATATGGTCTTACA
49367606 CGTAATCTTA
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
42 22 0.39
43 35 0.61
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.31
Consensus pattern (43 bp):
AATATCCCAGATATGGTCTTACATCAAATCTCATATCGATGCC
Found at i:49376068 original size:43 final size:42
Alignment explanation
Indices: 49376005--49376124 Score: 154
Period size: 43 Copynumber: 2.8 Consensus size: 42
49375995 TACCATACCA
* *
49376005 ATGCCATATCCCTGATATGGTCTTACATGTAATCTCATATCG
1 ATGCCATATCCCAGCTATGGTCTTACATGTAATCTCATATCG
*
49376047 ATGCCA-ATGGCCTAGCTATGGTCTTACATG-AAGTCTCATATCG
1 ATGCCATAT--CCCAGCTATGGTCTTACATGTAA-TCTCATATCG
* *
49376090 ATGCCATATCCCAGGTATGGTCTTACACGTAATCT
1 ATGCCATATCCCAGCTATGGTCTTACATGTAATCT
49376125 TAGTAACCCT
Statistics
Matches: 67, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
41 2 0.03
42 28 0.42
43 35 0.52
44 2 0.03
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (42 bp):
ATGCCATATCCCAGCTATGGTCTTACATGTAATCTCATATCG
Found at i:49382286 original size:40 final size:39
Alignment explanation
Indices: 49382242--49382345 Score: 163
Period size: 39 Copynumber: 2.6 Consensus size: 39
49382232 AGCCCGGTTA
* *
49382242 TAGTAACTCGCACAAATGCCTTCGGGACTTAACTCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGG-CTTAACCCGGAAT
*
49382282 TAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAAT
1 TAGTAACTCGCACAAATGCCTTCGGGCTTAACCCGGAAT
*
49382321 TAGTATCTCGCACAAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGG
49382346 ATCTTAGTCC
Statistics
Matches: 60, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
39 34 0.57
40 26 0.43
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
TAGTAACTCGCACAAATGCCTTCGGGCTTAACCCGGAAT
Found at i:49382315 original size:79 final size:81
Alignment explanation
Indices: 49382214--49382398 Score: 211
Period size: 79 Copynumber: 2.3 Consensus size: 81
49382204 GCTACTCGTT
* * * *
49382214 CAAATGCGTTCGGGTCATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACT-
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTT-ACTC
* *
49382276 CGGATTTAGTAAC-TCGCA
63 CGGATATAGTAACTTAGCA
* *
49382294 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTACTCCGG
* *
49382358 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
49382374 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
49382399 CATCATTCGA
Statistics
Matches: 91, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
78 5 0.05
79 53 0.58
80 33 0.36
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTACTCCGG
ATATAGTAACTTAGCA
Found at i:49383593 original size:56 final size:56
Alignment explanation
Indices: 49383526--49383757 Score: 446
Period size: 56 Copynumber: 4.1 Consensus size: 56
49383516 TATTAGTTTA
49383526 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
49383582 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
49383638 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
49383694 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
49383750 TTGCCCAT
1 TTGCCCAT
49383758 CATCCCTTGT
Statistics
Matches: 173, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 173 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:49385764 original size:27 final size:27
Alignment explanation
Indices: 49385734--49385911 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
49385724 ATATTGAGTC
* * * *
49385734 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
49385761 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
49385788 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
49385816 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
49385843 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
49385870 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
49385897 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
49385912 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:49385873 original size:82 final size:81
Alignment explanation
Indices: 49385755--49385910 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
49385745 TGCTATATAA
* *
49385755 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
49385820 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
49385837 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
49385901 CACTTAGTGC
65 CACTTAGTGC
49385911 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:49393931 original size:27 final size:27
Alignment explanation
Indices: 49393901--49394078 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
49393891 ATATTGAGTC
* * * *
49393901 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
49393928 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
49393955 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
49393983 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
49394010 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
49394037 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
49394064 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
49394079 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:49394040 original size:82 final size:81
Alignment explanation
Indices: 49393922--49394077 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
49393912 TGCTATATAA
* *
49393922 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
49393987 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
49394004 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
49394068 CACTTAGTGC
65 CACTTAGTGC
49394078 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:49401604 original size:40 final size:38
Alignment explanation
Indices: 49401567--49401696 Score: 156
Period size: 39 Copynumber: 3.3 Consensus size: 38
49401557 GCTACTCGTT
*
49401567 CAAATGCCTTCGGGTCATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACA-A-CCCGGATT-TAGTAACTCGCA
49401607 CAAATGCCTTCGGGACAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACAACCCGGATTTAGTAACTCGCA
* * * *
49401645 CAAATGCCTTCGGG-CTTAGCCTGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGAC--AACCCGGATTTAGTAACTCGCA
49401684 CAAATGCCTTCGG
1 CAAATGCCTTCGG
49401697 ATCTTAGTCC
Statistics
Matches: 82, Mismatches: 5, Indels: 7
0.87 0.05 0.07
Matches are distributed among these distances:
37 1 0.01
38 31 0.38
39 34 0.41
40 16 0.20
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (38 bp):
CAAATGCCTTCGGGACAACCCGGATTTAGTAACTCGCA
Found at i:49401686 original size:39 final size:39
Alignment explanation
Indices: 49401567--49401749 Score: 178
Period size: 40 Copynumber: 4.6 Consensus size: 39
49401557 GCTACTCGTT
*
49401567 CAAATGCCTTCGGGTCATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGAC-TAGCCCGGATT-TAGTAACTCGCA
*
49401607 CAAATGCCTTCGGGAC-AACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTAGCCCGGATTTAGTAACTCGCA
* * *
49401645 CAAATGCCTTCGGG-CTTAGCCTGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGAC-TAGCCCGGATTTAGTAACTCGCA
* * * * *
49401684 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-C-TAGCCCGGATTTAGTAAC-TCGCA
49401725 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGAC-TAGCCCGGA
49401750 CATCATTCGA
Statistics
Matches: 121, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
37 1 0.01
38 34 0.28
39 31 0.26
40 44 0.36
41 11 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTAGCCCGGATTTAGTAACTCGCA
Found at i:49402943 original size:56 final size:56
Alignment explanation
Indices: 49402876--49403163 Score: 558
Period size: 56 Copynumber: 5.1 Consensus size: 56
49402866 TATTAGTTTA
*
49402876 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
49402932 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
*
49402988 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
49403044 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
49403100 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
49403156 TTGCCCAT
1 TTGCCCAT
49403164 CATCCCTTGT
Statistics
Matches: 229, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 229 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:49410440 original size:50 final size:49
Alignment explanation
Indices: 49410316--49410488 Score: 170
Period size: 50 Copynumber: 3.5 Consensus size: 49
49410306 TGAGGTCGCA
*** * *
49410316 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT-GATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTA-CC--AGACTGTAGGTCACG
* **
49410367 TGTGTAGTACTAAGTGCAAGCTACTACATGTATTAGA-TGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGACT-GT-AGGTCACG
* * * * *
49410417 TGTGTAGTACAAAGTGCAGGCTACTACGTGTACCAGACTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGACTGTAGGTCACG
49410466 TGTGTAGTACTAAGTGCAGGCTA
1 TGTGTAGTACTAAGTGCAGGCTA
49410489 TTATGCGTAC
Statistics
Matches: 101, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
47 1 0.01
48 4 0.04
49 27 0.27
50 40 0.40
51 29 0.29
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGACTGTAGGTCACG
Found at i:49427016 original size:34 final size:34
Alignment explanation
Indices: 49426973--49427040 Score: 95
Period size: 34 Copynumber: 2.0 Consensus size: 34
49426963 GCATTTCTAT
*
49426973 TACTGTTACTGGGAT-GGGCTAAGG-CCTACATTGA
1 TACTGTTACT-GAATAGGGCTAAGGCCCTA-ATTGA
49427007 TACTGTTACTGAATAGGGCTAAGGCCCTAATTGA
1 TACTGTTACTGAATAGGGCTAAGGCCCTAATTGA
49427041 GATTGAACTG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
33 3 0.10
34 24 0.77
35 4 0.13
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (34 bp):
TACTGTTACTGAATAGGGCTAAGGCCCTAATTGA
Found at i:49429841 original size:15 final size:16
Alignment explanation
Indices: 49429812--49429841 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
49429802 CAAACATCCT
49429812 TTAACACATTATCAAA
1 TTAACACATTATCAAA
49429828 TTAACACA-TATCAA
1 TTAACACATTATCAA
49429842 CAAAGCACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAACACATTATCAAA
Found at i:49442054 original size:29 final size:29
Alignment explanation
Indices: 49442018--49442123 Score: 131
Period size: 29 Copynumber: 3.6 Consensus size: 29
49442008 GTCGTAATCG
***
49442018 TCCCTTTTCATATTTGATGGTTAAAACCA
1 TCCCTTTTCATATTTGATGGTTGTCACCA
* * * *
49442047 TCCTTTTTCATTAATCGATGGTCGTCACCA
1 TCCCTTTTCA-TATTTGATGGTTGTCACCA
*
49442077 TCCCTTTTCATAGTTGATGGTTGTCACCA
1 TCCCTTTTCATATTTGATGGTTGTCACCA
49442106 TCCCTTTTCATATTTGAT
1 TCCCTTTTCATATTTGAT
49442124 AGCCGAAGCT
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
29 42 0.66
30 22 0.34
ACGTcount: A:0.21, C:0.24, G:0.12, T:0.43
Consensus pattern (29 bp):
TCCCTTTTCATATTTGATGGTTGTCACCA
Found at i:49442096 original size:59 final size:59
Alignment explanation
Indices: 49442004--49442116 Score: 154
Period size: 59 Copynumber: 1.9 Consensus size: 59
49441994 TGTGCTAAAT
* * * *
49442004 GATGGTCGTAATCGTCCCTTTTCATATTTGATGGTTAAAACCATCCTTTTTCATTAATC
1 GATGGTCGTAACCATCCCTTTTCATAGTTGATGGTTAAAACCATCCCTTTTCATTAATC
* ***
49442063 GATGGTCGTCACCATCCCTTTTCATAGTTGATGGTTGTCACCATCCCTTTTCAT
1 GATGGTCGTAACCATCCCTTTTCATAGTTGATGGTTAAAACCATCCCTTTTCAT
49442117 ATTTGATAGC
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
59 46 1.00
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (59 bp):
GATGGTCGTAACCATCCCTTTTCATAGTTGATGGTTAAAACCATCCCTTTTCATTAATC
Found at i:49443766 original size:45 final size:45
Alignment explanation
Indices: 49443707--49443792 Score: 118
Period size: 45 Copynumber: 1.9 Consensus size: 45
49443697 CCGATATCAG
* * *
49443707 CTCACCAGCATTATAGCCTGCTAGGCTCGAAGGCCTGAATAGTAT
1 CTCACCAGCATTATAGCCTGCTAAGCTCAAAGGCCCGAATAGTAT
* **
49443752 CTCACCGGCATTATAGTTTGCTAAGCTCAAAGGCCCGAATA
1 CTCACCAGCATTATAGCCTGCTAAGCTCAAAGGCCCGAATA
49443793 ATCAAGTCAA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 35 1.00
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (45 bp):
CTCACCAGCATTATAGCCTGCTAAGCTCAAAGGCCCGAATAGTAT
Found at i:49444186 original size:43 final size:43
Alignment explanation
Indices: 49444122--49444276 Score: 256
Period size: 43 Copynumber: 3.6 Consensus size: 43
49444112 CCGGCATTAC
* *
49444122 GCCTGCTAGGCACGAAGGCCCGAATACACATTACCGACACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
49444165 GCCTGCTAGGCACGAAAGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
49444208 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGTACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
49444251 GCCTGCTAGGCACGAAGGGCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
49444277 TAATACCAGC
Statistics
Matches: 105, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 105 1.00
ACGTcount: A:0.31, C:0.32, G:0.25, T:0.12
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:49444317 original size:38 final size:38
Alignment explanation
Indices: 49444274--49444348 Score: 114
Period size: 38 Copynumber: 2.0 Consensus size: 38
49444264 GAAGGGCCGA
* * *
49444274 ATATAATACCAGCACTAGGCCTGCGGGATTTATCCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
*
49444312 ATATAATATCAGCACGAAGCCTGCGGGATTTAACCCG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCG
49444349 AATACACATC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.23
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
Found at i:49450022 original size:20 final size:20
Alignment explanation
Indices: 49449994--49450070 Score: 84
Period size: 20 Copynumber: 3.9 Consensus size: 20
49449984 TAAACTATGA
* *
49449994 ACCACTCCATTTACTTTCTT
1 ACCATTCCATTTACTTACTT
49450014 ACCATTCCATTTACTTACTT
1 ACCATTCCATTTACTTACTT
* * *
49450034 TCTATTTCATTTACTTACTCT
1 ACCATTCCATTTACTTACT-T
*
49450055 -CCATTCTATTTACTTA
1 ACCATTCCATTTACTTA
49450071 GCATAAGCTA
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
20 47 0.98
21 1 0.02
ACGTcount: A:0.22, C:0.29, G:0.00, T:0.49
Consensus pattern (20 bp):
ACCATTCCATTTACTTACTT
Found at i:49450635 original size:89 final size:89
Alignment explanation
Indices: 49450514--49450676 Score: 272
Period size: 89 Copynumber: 1.8 Consensus size: 89
49450504 ATTTATCATT
* * *
49450514 CCTCTCCTTTTCATGCCCGTTGAACTGTTTAGAATACTATCGGATACGCAGGATAGCTGACACGA
1 CCTCTCCTTTTCATGCCCGTTGAACCGCTTAGAATACTATCGGATACACAGGATAGCTGACACGA
49450579 AATGTACTAAACATATAACTGTAA
66 AATGTACTAAACATATAACTGTAA
* * *
49450603 CCTCTCCTTTTTATGCCCGTTGAACCGCTTAGAATCCTATCGGATACACGGGATAGCTGACACGA
1 CCTCTCCTTTTCATGCCCGTTGAACCGCTTAGAATACTATCGGATACACAGGATAGCTGACACGA
49450668 AATGTACTA
66 AATGTACTA
49450677 TAACTGTAAC
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
89 68 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.29
Consensus pattern (89 bp):
CCTCTCCTTTTCATGCCCGTTGAACCGCTTAGAATACTATCGGATACACAGGATAGCTGACACGA
AATGTACTAAACATATAACTGTAA
Found at i:49455924 original size:40 final size:40
Alignment explanation
Indices: 49455742--49455964 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
49455732 TCCTCGTTCA
* * * * *
49455742 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
49455781 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
49455821 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
49455861 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
49455901 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
49455941 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
49455965 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 115 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:49455973 original size:41 final size:41
Alignment explanation
Indices: 49455896--49455973 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
49455886 TTAGTATCTC
* * *
49455896 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
49455937 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
49455974 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:49463794 original size:40 final size:40
Alignment explanation
Indices: 49463612--49463834 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
49463602 TCCTCGTTCA
* * * * *
49463612 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
49463651 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
49463691 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
49463731 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
49463771 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
49463811 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
49463835 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 115 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:49463843 original size:41 final size:41
Alignment explanation
Indices: 49463766--49463843 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
49463756 TTAGTATCTC
* * *
49463766 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
49463807 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
49463844 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Done.