Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 157 of 316
Found at i:49754019 original size:6 final size:6
Alignment explanation
Indices: 49753954--49754090 Score: 93
Period size: 6 Copynumber: 22.3 Consensus size: 6
49753944 TTGCATTCAC
* * * *
49753954 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTTTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * *
49754003 -TCACCTA ATTTTG ATTTTG ATTCTG ATTCTG ATTCTG ATTCTG -TCACCTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG
*
49754053 ATTCTG ATTTTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
49754091 AATGTTTCTT
Statistics
Matches: 102, Mismatches: 18, Indels: 22
0.72 0.13 0.15
Matches are distributed among these distances:
5 5 0.05
6 85 0.83
7 9 0.09
8 3 0.03
ACGTcount: A:0.19, C:0.16, G:0.15, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:49754029 original size:43 final size:43
Alignment explanation
Indices: 49753977--49754088 Score: 170
Period size: 43 Copynumber: 2.6 Consensus size: 43
49753967 TTCTGTTACC
* * *
49753977 TGATACTGATTTTGATTCTAATTCTGTCACCTAATTTTGATTT
1 TGATTCTGATTCTGATTCTAATTCTGTCACCTAATTCTGATTT
* *
49754020 TGATTCTGATTCTGATTCTGATTCTGTCACCTGATTCTGATTT
1 TGATTCTGATTCTGATTCTAATTCTGTCACCTAATTCTGATTT
*
49754063 TGATTCTGATTCTGATTCTAGTTCTG
1 TGATTCTGATTCTGATTCTAATTCTG
49754089 ATAATGTTTC
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 62 1.00
ACGTcount: A:0.19, C:0.16, G:0.15, T:0.50
Consensus pattern (43 bp):
TGATTCTGATTCTGATTCTAATTCTGTCACCTAATTCTGATTT
Found at i:49758239 original size:47 final size:47
Alignment explanation
Indices: 49758173--49758413 Score: 340
Period size: 47 Copynumber: 5.1 Consensus size: 47
49758163 GAAATGATAG
*
49758173 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
49758220 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
49758267 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAGATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
49758314 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* * * * * * *
49758363 -CAGGGCTGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCT-AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
49758410 TAAG
1 TAAG
49758414 TCCCGAAGGG
Statistics
Matches: 175, Mismatches: 15, Indels: 7
0.89 0.08 0.04
Matches are distributed among these distances:
47 135 0.77
48 7 0.04
49 33 0.19
ACGTcount: A:0.31, C:0.10, G:0.32, T:0.27
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:49758588 original size:37 final size:37
Alignment explanation
Indices: 49758532--49758610 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
49758522 CCGAGCTCTA
* * * *
49758532 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTAGAGATTATGTCCGGGT
*
49758569 AAGACCCGATAACTTCGTGTAGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTAGAGATTATGTCCGGGT
49758606 AAGAC
1 AAGAC
49758611 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTAGAGATTATGTCCGGGT
Found at i:49760521 original size:43 final size:43
Alignment explanation
Indices: 49760473--49760575 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
49760463 TTGGTTTTCA
*
49760473 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTAAGATTG
49760516 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTAAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTAAGATTG
49760559 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
49760576 TTGAAATGCA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.23, C:0.16, G:0.35, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTAAGATTG
Found at i:49760592 original size:29 final size:29
Alignment explanation
Indices: 49760557--49760630 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
49760547 GTTGTAAGAT
* *
49760557 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
49760586 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
49760615 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
49760631 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:49760989 original size:40 final size:40
Alignment explanation
Indices: 49760941--49761083 Score: 171
Period size: 40 Copynumber: 3.6 Consensus size: 40
49760931 TCGAATGATG
* *
49760941 TCCGGACTAAGTTCTGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
49760981 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
*** * * *
49761021 TCCGTG-CTAAACCCCGAAGAGCATTTGTGCTGGTGTTATA
1 TCCG-GACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
* * *
49761061 TCCGGGCTAGGTCCCGAAGAGCA
1 TCCGGACTAAGTTCCGAAGAGCA
49761084 ATCATGCTGG
Statistics
Matches: 90, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
39 1 0.01
40 88 0.98
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
Found at i:49761288 original size:25 final size:25
Alignment explanation
Indices: 49761260--49761310 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
49761250 CTATAATAAC
49761260 GAATGAATAAGA-GCACTATGTGTGT
1 GAATG-ATAAGAGGCACTATGTGTGT
* *
49761285 GAATGATTAGAGGCACTGTGTGTGT
1 GAATGATAAGAGGCACTATGTGTGT
49761310 G
1 G
49761311 CGAATTCCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 5 0.22
25 18 0.78
ACGTcount: A:0.29, C:0.08, G:0.33, T:0.29
Consensus pattern (25 bp):
GAATGATAAGAGGCACTATGTGTGT
Found at i:49764861 original size:47 final size:47
Alignment explanation
Indices: 49764795--49765419 Score: 964
Period size: 47 Copynumber: 13.1 Consensus size: 47
49764785 GAAATGATAG
* *
49764795 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
49764842 TAGGGCCTAATGGCTGATGTGATGAATGGGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
49764889 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
49764936 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
49764985 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTGTATATATGTGA
*
49765034 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
49765081 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
49765128 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
49765177 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* *
49765226 TAAGGCCTAATGGCCGAGGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
49765273 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
49765320 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* * * * * * *
49765369 -CAGGGCTGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCT-AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
49765416 TAAG
1 TAAG
49765420 TCCCGAAGGG
Statistics
Matches: 540, Mismatches: 28, Indels: 19
0.92 0.05 0.03
Matches are distributed among these distances:
47 319 0.59
48 7 0.01
49 211 0.39
51 3 0.01
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:49765006 original size:96 final size:94
Alignment explanation
Indices: 49764795--49765419 Score: 964
Period size: 96 Copynumber: 6.5 Consensus size: 94
49764785 GAAATGATAG
* * * *
49764795 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATACGTGATAGGGCCTAATGGCTGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
49764860 GTGATGAATGGGAAAGTGTATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
*
49764889 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGAGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
49764954 GTGATGAATGTGAAAGTGTATATATATGTGA
66 GTGATGAATGTGAAAGTG--TATATATGTGA
*
49764985 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCG
*
49765050 ATGTGATGAATGTGAAAGTGTATATATGAGA
64 ATGTGATGAATGTGAAAGTGTATATATGTGA
*
49765081 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGAGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
49765146 GTGATGAATGTGAAAGTGTATATATATGTGA
66 GTGATGAATGTGAAAGTG--TATATATGTGA
*
49765177 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
* *
49765242 AGGTGATGAATGTGAAAGTGTATATACGTGA
64 ATGTGATGAATGTGAAAGTGTATATATGTGA
49765273 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
49765338 GTGATGAATGTGGAAGTGTATATATATGTGA
66 GTGATGAATGTGAAAGTG--TATATATGTGA
* * * * * * *
49765369 -CAGGGCTGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAAGGCCT-AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
49765420 TCCCGAAGGG
Statistics
Matches: 493, Mismatches: 27, Indels: 20
0.91 0.05 0.04
Matches are distributed among these distances:
94 171 0.35
95 5 0.01
96 223 0.45
98 94 0.19
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (94 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGA
Found at i:49765219 original size:239 final size:238
Alignment explanation
Indices: 49764795--49765419 Score: 974
Period size: 239 Copynumber: 2.6 Consensus size: 238
49764785 GAAATGATAG
* * * *
49764795 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATACGTGATAGGGCCTAATGGCTGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* *
49764860 GTGATGAATGGGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
49764925 --TATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
131 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAA
* *
49764988 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGA
195 GGCCTAATGGCCGAGGTGATGAATGTGAAA--GTGTATATACGTGA
*
49765034 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGAGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
49765099 GTGATGAATGTGAAAGTGTATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
49765164 TATATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
131 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAA
49765229 GGCCTAATGGCCGAGGTGATGAATGTGAAAGTGTATATACGTGA
195 GGCCTAATGGCCGAGGTGATGAATGTGAAAGTGTATATACGTGA
49765273 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* * * * * *
49765338 GTGATGAATGTGGAAGTGTATATAT-ATG-TGACAGGGCTGAGTGGCCAACGTGATGGATGTGAA
66 GTGATGAATGTGAAAGTGTATATATGA-GAT-A-AGGCCT-AATGGCCGATGTGATGAATGTGAA
49765401 AGTGTATA-A-ATGTGATAAG
127 AGTGTATATATATGTGATAAG
49765420 TCCCGAAGGG
Statistics
Matches: 360, Mismatches: 20, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
238 2 0.01
239 235 0.65
240 6 0.02
241 117 0.32
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (238 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAG
GCCTAATGGCCGAGGTGATGAATGTGAAAGTGTATATACGTGA
Found at i:49765594 original size:37 final size:37
Alignment explanation
Indices: 49765538--49765616 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
49765528 CCGAGCTCTA
* * *
49765538 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
49765575 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
49765612 AAGAC
1 AAGAC
49765617 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:49772620 original size:45 final size:42
Alignment explanation
Indices: 49772523--49772647 Score: 121
Period size: 45 Copynumber: 2.9 Consensus size: 42
49772513 TTCTCAAATC
*
49772523 ACCGGCATT-TCA-CCTGTTAGGCTCG-AGGCCCGATATCAGTTT
1 ACCGGCATTAT-AGCCTGCTAGGCTCGAAGGCCCGA-AT-AGTTT
49772565 ACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGTATCT
1 ACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGT-T-T
* ** * *
49772609 CACCGGTATTATAGTTTGCTAAGCTCAAAGGCCCGAATA
1 -ACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATA
49772648 ATCAAGTCAA
Statistics
Matches: 71, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
42 13 0.18
43 16 0.23
44 9 0.13
45 33 0.46
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (42 bp):
ACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGTTT
Found at i:49773085 original size:38 final size:38
Alignment explanation
Indices: 49773043--49773239 Score: 243
Period size: 38 Copynumber: 5.1 Consensus size: 38
49773033 GAAGGCCCGA
* * * *
49773043 ATATAATACTAGCACTAGGCCTGCGGGATTTATCCCAG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAG
*
49773081 ATATAATACCAGCACGAAGCCTGCTGGATTTAACCCAG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAG
** * * *
49773119 ATATTTTACCAGCACGAAGCTTGCGGGTCTTTAAGCCCGG
1 ATATAATACCAGCACGAAGCCTGCGGG-ATTTAA-CCCAG
49773159 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCC-G
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAG
* * *
49773196 AATATAATACCAGCACGAAGCCTACAGGATTTAACCCGG
1 -ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAG
49773235 ATATA
1 ATATA
49773240 CATCGAATTT
Statistics
Matches: 138, Mismatches: 17, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
37 1 0.01
38 98 0.71
39 11 0.08
40 28 0.20
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.23
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAG
Found at i:49778817 original size:37 final size:37
Alignment explanation
Indices: 49778768--49778840 Score: 146
Period size: 37 Copynumber: 2.0 Consensus size: 37
49778758 CATCATCATC
49778768 ATATATACTTAAACCAATATTAGCCAATACCATATGT
1 ATATATACTTAAACCAATATTAGCCAATACCATATGT
49778805 ATATATACTTAAACCAATATTAGCCAATACCATATG
1 ATATATACTTAAACCAATATTAGCCAATACCATATG
49778841 GCCATTTACA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.44, C:0.19, G:0.05, T:0.32
Consensus pattern (37 bp):
ATATATACTTAAACCAATATTAGCCAATACCATATGT
Found at i:49779520 original size:42 final size:42
Alignment explanation
Indices: 49779410--49779521 Score: 136
Period size: 43 Copynumber: 2.6 Consensus size: 42
49779400 CACCATACCA
* * *
49779410 ATGCCATATCCCAAATATGGTCTTATATGGGATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACATGAGATCTCATATCG
* * *
49779452 ATGCCAATAGCCCAGCTATGGTCTTACATGA-AGTCTTATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACATGAGA-TCTCATATCG
*
49779495 ATGTCATATCCCAGATATGGTCTTACA
1 ATGCCATATCCCAGATATGGTCTTACA
49779522 CGTAATCTCA
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
42 26 0.44
43 33 0.56
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGAGATCTCATATCG
Found at i:49780834 original size:29 final size:29
Alignment explanation
Indices: 49780800--49780865 Score: 87
Period size: 29 Copynumber: 2.3 Consensus size: 29
49780790 GTTGAATCAC
* * *
49780800 GATGGTCATGACGATCCCTTTTCATAGTT
1 GATGGTCATCACCATCCCTTTTCATAATT
*
49780829 GATGGTCGTCACCATCCCTTTTCATAATT
1 GATGGTCATCACCATCCCTTTTCATAATT
*
49780858 GATAGTCA
1 GATGGTCA
49780866 AAGCTACCCT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.36
Consensus pattern (29 bp):
GATGGTCATCACCATCCCTTTTCATAATT
Found at i:49780909 original size:29 final size:29
Alignment explanation
Indices: 49780842--49780999 Score: 115
Period size: 29 Copynumber: 5.4 Consensus size: 29
49780832 GGTCGTCACC
* *
49780842 ATCCCTTTTCATAATTGATAGTCAAAGCT
1 ATCCCTTTTCATAATAGATAGCCAAAGCT
49780871 A-CCCTTTTTCATAATAGATAGCCAAAGCT
1 ATCCC-TTTTCATAATAGATAGCCAAAGCT
* * * *** *
49780900 ATCCCCTTTCATATTCA-ATGGTCGTCA-CC
1 ATCCCTTTTCATAAT-AGATAG-CCAAAGCT
* * *
49780929 ATCCCTTTTCATAGTCGATAGCCGAAGCT
1 ATCCCTTTTCATAATAGATAGCCAAAGCT
** * *
49780958 ATCTTTTTTCATAATCGATAGCCAAAACT
1 ATCCCTTTTCATAATAGATAGCCAAAGCT
*
49780987 ATCCATTTTCATA
1 ATCCCTTTTCATA
49781000 GTTGATGATC
Statistics
Matches: 99, Mismatches: 24, Indels: 12
0.73 0.18 0.09
Matches are distributed among these distances:
28 5 0.05
29 88 0.89
30 6 0.06
ACGTcount: A:0.29, C:0.25, G:0.10, T:0.35
Consensus pattern (29 bp):
ATCCCTTTTCATAATAGATAGCCAAAGCT
Found at i:49780966 original size:87 final size:87
Alignment explanation
Indices: 49780813--49781013 Score: 269
Period size: 87 Copynumber: 2.3 Consensus size: 87
49780803 GGTCATGACG
* * *
49780813 ATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATAATTGATAGTCAAAGCTACCCTTT
1 ATCCCTTTTCATAGTTAATGGTCGTCACCATCCCTTTTCATAATCGATAGCCAAAGCTACCCTTT
*
49780878 TTCATAATAGATAGCCAAAGCT
66 TTCATAATAGATAGCCAAAACT
* * * * *
49780900 ATCCCCTTTCATA-TTCAATGGTCGTCACCATCCCTTTTCATAGTCGATAGCCGAAGCTATCTTT
1 ATCCCTTTTCATAGTT-AATGGTCGTCACCATCCCTTTTCATAATCGATAGCCAAAGCTACCCTT
*
49780964 TTTCATAATCGATAGCCAAAACT
65 TTTCATAATAGATAGCCAAAACT
* * *
49780987 ATCCATTTTCATAGTTGATGATCGTCA
1 ATCCCTTTTCATAGTTAATGGTCGTCA
49781014 TTACGCCATT
Statistics
Matches: 98, Mismatches: 14, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
86 2 0.02
87 94 0.96
88 2 0.02
ACGTcount: A:0.27, C:0.25, G:0.12, T:0.36
Consensus pattern (87 bp):
ATCCCTTTTCATAGTTAATGGTCGTCACCATCCCTTTTCATAATCGATAGCCAAAGCTACCCTTT
TTCATAATAGATAGCCAAAACT
Found at i:49783813 original size:21 final size:21
Alignment explanation
Indices: 49783783--49783825 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
49783773 CTCGAAATTG
*
49783783 TACGTCGGATAATTCTTTTCA
1 TACGTAGGATAATTCTTTTCA
49783804 TACGTAGGATAATTCTTTTCA
1 TACGTAGGATAATTCTTTTCA
49783825 T
1 T
49783826 GCGACTTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.26, C:0.16, G:0.14, T:0.44
Consensus pattern (21 bp):
TACGTAGGATAATTCTTTTCA
Found at i:49785250 original size:33 final size:32
Alignment explanation
Indices: 49785188--49785251 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
49785178 ACGAAGTCAC
* *
49785188 CAGATATAAATATTGTGGCTAGGCCACCAGAA
1 CAGATATAAATATTGTGGCGAAGCCACCAGAA
* *
49785220 CAGATATATATATATGTTGCGAAGCCACCAGA
1 CAGATATAAATAT-TGTGGCGAAGCCACCAGA
49785252 TTGCAGCGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 12 0.44
33 15 0.56
ACGTcount: A:0.38, C:0.19, G:0.20, T:0.23
Consensus pattern (32 bp):
CAGATATAAATATTGTGGCGAAGCCACCAGAA
Found at i:49785382 original size:98 final size:99
Alignment explanation
Indices: 49785151--49785416 Score: 473
Period size: 98 Copynumber: 2.7 Consensus size: 99
49785141 AACCACAGAA
* *
49785151 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGATATAAATAT-TGTGGCTAGGCCAC
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAATCACCAGA-ACAAATATATGTGGCTAGGCCAC
49785215 CAGAACAGATATATATATATGTTGCGAAGCCACCAG
65 CAGAACAGA-ATATATATATGTTGCGAAGCCACCAG
49785251 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAATCACCAGAACAAATATATGTGGCTAGGCCACC
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAATCACCAGAACAAATATATGTGGCTAGGCCACC
49785316 AGAACAG-ATATATATATGTTGCGAAGCCACCAG
66 AGAACAGAATATATATATGTTGCGAAGCCACCAG
*
49785349 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAATCACCAGAACAAATATATGTGGCGAGGCCACC
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAATCACCAGAACAAATATATGTGGCTAGGCCACC
49785414 AGA
66 AGA
49785417 TTGCAGCGAG
Statistics
Matches: 162, Mismatches: 3, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
98 93 0.57
99 7 0.04
100 62 0.38
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.21
Consensus pattern (99 bp):
ATTGCAGCGAGGCTGCCAGATATTGTGACGAAATCACCAGAACAAATATATGTGGCTAGGCCACC
AGAACAGAATATATATATGTTGCGAAGCCACCAG
Found at i:49792712 original size:27 final size:27
Alignment explanation
Indices: 49792664--49792773 Score: 87
Period size: 27 Copynumber: 4.0 Consensus size: 27
49792654 GCGAGGCTGC
* * * *
49792664 CAGATATTATGACGAAGTCACCAGATA
1 CAGATATTGTGGCGAGGCCACCAGATA
*
49792691 CAGATATTGTGGCTAGGCCACCAGAACATA
1 CAGATATTGTGGCGAGGCCACCAG---ATA
* * * * *
49792721 TATATATTGTGACGAAGTCACCAGA-A
1 CAGATATTGTGGCGAGGCCACCAGATA
49792747 CAGATATATGTGGCGAGGCCACCAGAT
1 CAGATAT-TGTGGCGAGGCCACCAGAT
49792774 TGCAGCGAGG
Statistics
Matches: 62, Mismatches: 16, Indels: 9
0.71 0.18 0.10
Matches are distributed among these distances:
26 6 0.10
27 35 0.56
30 21 0.34
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (27 bp):
CAGATATTGTGGCGAGGCCACCAGATA
Found at i:49792730 original size:30 final size:28
Alignment explanation
Indices: 49792682--49792772 Score: 89
Period size: 27 Copynumber: 3.2 Consensus size: 28
49792672 ATGACGAAGT
*
49792682 CACCAGATACAG--ATATTGTGGCTAGGC
1 CACCAGA-ACAGATATATTGTGGCGAGGC
* * * *
49792709 CACCAGAACATATATATATTGTGACGAAGT
1 CACCAGAAC--AGATATATTGTGGCGAGGC
49792739 CACCAGAACAGATATA-TGTGGCGAGGC
1 CACCAGAACAGATATATTGTGGCGAGGC
49792766 CACCAGA
1 CACCAGA
49792773 TTGCAGCGAG
Statistics
Matches: 51, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
26 2 0.04
27 22 0.43
28 7 0.14
30 20 0.39
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (28 bp):
CACCAGAACAGATATATTGTGGCGAGGC
Found at i:49806921 original size:29 final size:29
Alignment explanation
Indices: 49806875--49806943 Score: 120
Period size: 29 Copynumber: 2.4 Consensus size: 29
49806865 AGCCGAAGCT
*
49806875 ATCCCTTTTCATATTTGATGGTCATCACC
1 ATCCCTTTTCATAGTTGATGGTCATCACC
*
49806904 ATCCCTTTTCATAGTTGATGGTCGTCACC
1 ATCCCTTTTCATAGTTGATGGTCATCACC
49806933 ATCCCTTTTCA
1 ATCCCTTTTCA
49806944 AAATCGATAG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.19, C:0.29, G:0.12, T:0.41
Consensus pattern (29 bp):
ATCCCTTTTCATAGTTGATGGTCATCACC
Found at i:49806992 original size:29 final size:29
Alignment explanation
Indices: 49806863--49807003 Score: 113
Period size: 29 Copynumber: 4.9 Consensus size: 29
49806853 GATGTTACAA
* * * *
49806863 ATAGCCGAAGCTATCCCTTTTCATATTTG
1 ATAGTCGAAACTATCCCTTTTCATAATCG
* * * * *
49806892 ATGGTC-ATCACCATCCCTTTTCATAGTTG
1 ATAGTCGA-AACTATCCCTTTTCATAATCG
* ** * *
49806921 ATGGTCGTCACCATCCCTTTTCAAAATCG
1 ATAGTCGAAACTATCCCTTTTCATAATCG
*
49806950 ATAGTCGAAGCTATCCCTTTTCATAATCG
1 ATAGTCGAAACTATCCCTTTTCATAATCG
* *
49806979 ATAGTTGAAACTATCCTTTTTCATA
1 ATAGTCGAAACTATCCCTTTTCATA
49807004 GTTGATGATC
Statistics
Matches: 91, Mismatches: 19, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
28 1 0.01
29 90 0.99
ACGTcount: A:0.26, C:0.25, G:0.13, T:0.37
Consensus pattern (29 bp):
ATAGTCGAAACTATCCCTTTTCATAATCG
Found at i:49807930 original size:14 final size:14
Alignment explanation
Indices: 49807911--49807937 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
49807901 CTTACATATT
49807911 AATTCTATAGCTAG
1 AATTCTATAGCTAG
49807925 AATTCTATAGCTA
1 AATTCTATAGCTA
49807938 TTTAGTACCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (14 bp):
AATTCTATAGCTAG
Found at i:49812773 original size:26 final size:26
Alignment explanation
Indices: 49812738--49812788 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
49812728 AGTCATACAT
* *
49812738 CTCATAAGGGCGTAATAGTCAATTTAC
1 CTCATAAGGGCATAACAGTC-ATTTAC
49812765 CTCAT-AGGGCATAACAGTCATTTA
1 CTCATAAGGGCATAACAGTCATTTA
49812789 TCACTTTGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 5 0.23
26 12 0.55
27 5 0.23
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (26 bp):
CTCATAAGGGCATAACAGTCATTTAC
Found at i:49820295 original size:34 final size:34
Alignment explanation
Indices: 49820236--49820300 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
49820226 GTTCAGTTAC
*
49820236 GGCCTCAGCCTATTACAGTATCAGTATCAGTGTG
1 GGCCTCAGCCTATTACAGTATCAGTAACAGTGTG
* *
49820270 GGCCTTAGCCTATTTCAGTGA-CAGTAACAGT
1 GGCCTCAGCCTATTACAGT-ATCAGTAACAGT
49820301 ACAAATATGT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
34 26 0.96
35 1 0.04
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (34 bp):
GGCCTCAGCCTATTACAGTATCAGTAACAGTGTG
Found at i:49823021 original size:28 final size:28
Alignment explanation
Indices: 49822989--49823068 Score: 99
Period size: 28 Copynumber: 2.8 Consensus size: 28
49822979 CATACATGCT
*
49822989 TATGGCCCACTAGGCCCAATCTCAT-TCA
1 TATGGCCCACTAGGCCCAATCACATCT-A
*
49823017 TATGGCCCATTAGGCCCAAATCACATCTA
1 TATGGCCCACTAGGCCC-AATCACATCTA
* *
49823046 AATGGTCCACTAGGCCCAATCAC
1 TATGGCCCACTAGGCCCAATCAC
49823069 TTTTACAGTC
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
28 22 0.49
29 22 0.49
30 1 0.02
ACGTcount: A:0.29, C:0.34, G:0.15, T:0.23
Consensus pattern (28 bp):
TATGGCCCACTAGGCCCAATCACATCTA
Found at i:49823156 original size:17 final size:18
Alignment explanation
Indices: 49823134--49823168 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
49823124 TTGCCTATTA
49823134 TGGGCCCA-ATAGCCCAT
1 TGGGCCCATATAGCCCAT
*
49823151 TGGGCCCATTTAGCCCAT
1 TGGGCCCATATAGCCCAT
49823169 GCTGGCCTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.20, C:0.34, G:0.23, T:0.23
Consensus pattern (18 bp):
TGGGCCCATATAGCCCAT
Found at i:49823312 original size:16 final size:16
Alignment explanation
Indices: 49823288--49823338 Score: 66
Period size: 16 Copynumber: 3.2 Consensus size: 16
49823278 GTAGCCAAAC
49823288 TTTCGGCTTTTCGGCA
1 TTTCGGCTTTTCGGCA
* *
49823304 TTTCAGCTTTTTGGCA
1 TTTCGGCTTTTCGGCA
* *
49823320 TTTCGGCTTCTCGGGA
1 TTTCGGCTTTTCGGCA
49823336 TTT
1 TTT
49823339 GCCAATCTAC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.08, C:0.22, G:0.24, T:0.47
Consensus pattern (16 bp):
TTTCGGCTTTTCGGCA
Found at i:49825556 original size:39 final size:40
Alignment explanation
Indices: 49825399--49825570 Score: 267
Period size: 40 Copynumber: 4.3 Consensus size: 40
49825389 GCTACTCGTT
*
49825399 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCA
49825439 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
49825479 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
49825519 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
49825558 CAAATGCCTTCGG
1 CAAATGCCTTCGG
49825571 ATCTTAGTCT
Statistics
Matches: 126, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 35 0.28
40 89 0.71
41 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:49825607 original size:79 final size:80
Alignment explanation
Indices: 49825399--49825623 Score: 276
Period size: 80 Copynumber: 2.8 Consensus size: 80
49825389 GCTACTCGTT
* * * * * *
49825399 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACATAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
*
49825464 ATTTAGTAACTCGCA
66 AATTAGTAACTCGCA
* *
49825479 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
*
49825543 AATTAGTATCTCGCA
66 AATTAGTAACTCGCA
** * * *
49825558 CAAATGCCTTC-GGATCTTAGTCTGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAACCCGGATATAGTAAC-TAGCACAAATGCCTTCGGGACTTAGCCC
49825621 GGA
64 GGA
49825624 CATCATTCGA
Statistics
Matches: 127, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
78 3 0.02
79 55 0.43
80 69 0.54
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
AATTAGTAACTCGCA
Found at i:49825607 original size:119 final size:120
Alignment explanation
Indices: 49825399--49825623 Score: 287
Period size: 119 Copynumber: 1.9 Consensus size: 120
49825389 GCTACTCGTT
*
49825399 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACATAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAACCCGG
* *
49825464 ATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 ATATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * ** *
49825519 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCT
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CATAACCC
* * *
49825581 GGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAAC-TAGCACAAATGCCTTCGGGACTTAACCCGGA
49825624 CATCATTCGA
Statistics
Matches: 90, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
118 4 0.04
119 64 0.71
120 22 0.24
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAACCCGG
ATATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:49826154 original size:56 final size:56
Alignment explanation
Indices: 49826087--49826259 Score: 337
Period size: 56 Copynumber: 3.1 Consensus size: 56
49826077 TATTAGTTTA
49826087 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
49826143 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
49826199 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATCTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
49826255 TTGCC
1 TTGCC
49826260 TATCATCCCT
Statistics
Matches: 116, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 116 1.00
ACGTcount: A:0.23, C:0.24, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:49832805 original size:39 final size:40
Alignment explanation
Indices: 49832615--49832872 Score: 274
Period size: 40 Copynumber: 6.5 Consensus size: 40
49832605 AAATCACGTA
* * * * **
49832615 CCTTCGGAATTTAA-CCGGATATAGCAACTCGTTCAAATG
1 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
* * *
49832654 CCTTCGGGACATAGCCCGG-TTATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAATG
49832694 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
49832734 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
* * *
49832774 CCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATG
1 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
** * * * * *
49832813 CCTTC-GGATCTTAGTCCAGATATGGTCACTTAGCACAAA-G
1 CCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCACAAATG
*
49832853 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAACCCGGA
49832873 CATCATTCGA
Statistics
Matches: 189, Mismatches: 23, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
38 2 0.01
39 44 0.23
40 130 0.69
41 13 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
Found at i:49832856 original size:119 final size:120
Alignment explanation
Indices: 49832615--49832872 Score: 292
Period size: 119 Copynumber: 2.2 Consensus size: 120
49832605 AAATCACGTA
* * ** *
49832615 CCTTCGGAATTTAA-CCGGATATAGCAACTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATAG
1 CCTTCGGGACTTAACCCGGATATAGCAACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAG
* * * *
49832679 TAACTCGTACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
66 TAACTCGCACAAATGCCTTCGGGACTTAACCCAGATATAGTAACTAGCACAAATG
* * *
49832734 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGA-ATTA
1 CCTTCGGGACTTAACCCGGATATAGCAACTCGCACAAATGCCTTCGGGACATAGCCCGGATA-TA
* ** * *
49832797 GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCAGATATGGTCACTTAGCACAAA-G
65 GTAACTCGCACAAATGCCTTCGGGA-CTTAACCCAGATATAGTAAC-TAGCACAAATG
*
49832853 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAACCCGGA
49832873 CATCATTCGA
Statistics
Matches: 117, Mismatches: 18, Indels: 8
0.82 0.13 0.06
Matches are distributed among these distances:
118 4 0.03
119 76 0.65
120 37 0.32
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (120 bp):
CCTTCGGGACTTAACCCGGATATAGCAACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAG
TAACTCGCACAAATGCCTTCGGGACTTAACCCAGATATAGTAACTAGCACAAATG
Found at i:49833405 original size:56 final size:56
Alignment explanation
Indices: 49833338--49833457 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
49833328 TATTAGTTTA
*
49833338 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACAGAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
49833394 TTGCCCATGCTTCTTATTTTATTCTTCTATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
49833450 TTGCCCAT
1 TTGCCCAT
49833458 CATCCCTTGT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.23, C:0.23, G:0.10, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:49848990 original size:20 final size:21
Alignment explanation
Indices: 49848951--49848991 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
49848941 ACTTGTGTAA
*
49848951 CTATCAACAACCATTCAAAAT
1 CTATCAACAAACATTCAAAAT
*
49848972 CTATCATCAAACA-TCAAAAT
1 CTATCAACAAACATTCAAAAT
49848992 ACTCATATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.49, C:0.27, G:0.00, T:0.24
Consensus pattern (21 bp):
CTATCAACAAACATTCAAAAT
Found at i:49852156 original size:32 final size:32
Alignment explanation
Indices: 49852120--49852184 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
49852110 AATGAATGTG
49852120 AATGGTAAGTTTAATTCTTGTTATACGAACTT
1 AATGGTAAGTTTAATTCTTGTTATACGAACTT
*
49852152 AATGGTATGTTTAATTCTTGTTATACGAACTT
1 AATGGTAAGTTTAATTCTTGTTATACGAACTT
49852184 A
1 A
49852185 CTAAGCATTA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.31, C:0.09, G:0.15, T:0.45
Consensus pattern (32 bp):
AATGGTAAGTTTAATTCTTGTTATACGAACTT
Found at i:49856376 original size:157 final size:157
Alignment explanation
Indices: 49856090--49856378 Score: 436
Period size: 157 Copynumber: 1.8 Consensus size: 157
49856080 AAGCATTACA
* * *
49856090 TGCTTAGTAAGCTCGTATAATGGAAACTAAACTTACCAATCCCATTTATTAAATCTAATCATACA
1 TGCTTAGTAAGCTCGTACAACGGAAACTAAACTTACCAATCCCATTTAGTAAATCTAATCATACA
* * * * *
49856155 ATATCATGTTTTTCCATCCATTTGGCAAAATTGCTTAAACACATGCACTCAATCAAATAAGTTAG
66 ATATCATGTTTTTCCATCCATTAGGCAAAATTGCCTAAAAACATGAACTCAATCAAACAAGTTAG
49856220 TCACAAAATTTGCATATACATCAAGTG
131 TCACAAAATTTGCATATACATCAAGTG
* * * *
49856247 TGCTTAGTAAGTTCGTACAACGGAAATTGAACTTACCAATCCCGTTTAGTAAATCTAAGT-ATAC
1 TGCTTAGTAAGCTCGTACAACGGAAACTAAACTTACCAATCCCATTTAGTAAATCTAA-TCATAC
* *
49856311 AATGTCATGTTTTTCCATCCATTAGGCAAAATTGCCTAAAAACATGAATTCAATCAAACAAGTTA
65 AATATCATGTTTTTCCATCCATTAGGCAAAATTGCCTAAAAACATGAACTCAATCAAACAAGTTA
49856376 GTC
130 GTC
49856379 TTAGTCACAA
Statistics
Matches: 117, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
157 116 0.99
158 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.12, T:0.32
Consensus pattern (157 bp):
TGCTTAGTAAGCTCGTACAACGGAAACTAAACTTACCAATCCCATTTAGTAAATCTAATCATACA
ATATCATGTTTTTCCATCCATTAGGCAAAATTGCCTAAAAACATGAACTCAATCAAACAAGTTAG
TCACAAAATTTGCATATACATCAAGTG
Found at i:49862157 original size:16 final size:16
Alignment explanation
Indices: 49862136--49862167 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
49862126 GTAACGCCCA
*
49862136 AAAAATCTCGAAATCT
1 AAAAATCCCGAAATCT
49862152 AAAAATCCCGAAATCT
1 AAAAATCCCGAAATCT
49862168 CAAATTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.22, G:0.06, T:0.22
Consensus pattern (16 bp):
AAAAATCCCGAAATCT
Found at i:49863563 original size:29 final size:29
Alignment explanation
Indices: 49863525--49863632 Score: 148
Period size: 29 Copynumber: 3.8 Consensus size: 29
49863515 TGAATGTGAC
49863525 TGGGCCTAATGGGCCATATACATGTGATT
1 TGGGCCTAATGGGCCATATACATGTGATT
* *
49863554 TGGGCCTAATAGGCCATATACAGGTGATT
1 TGGGCCTAATGGGCCATATACATGTGATT
*
49863583 TGGGCCTAATGGGCCATATGA-ATATGA-T
1 TGGGCCTAATGGGCCATAT-ACATGTGATT
* *
49863611 TGGGCTTAATGGGCCAAATACA
1 TGGGCCTAATGGGCCATATACA
49863633 GGTATGTGAA
Statistics
Matches: 70, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
27 1 0.01
28 19 0.27
29 49 0.70
30 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATACATGTGATT
Found at i:49864734 original size:17 final size:18
Alignment explanation
Indices: 49864702--49864735 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
49864692 TTTAAGAAGG
49864702 GTTTTCAATGAAAACACA
1 GTTTTCAATGAAAACACA
*
49864720 GTTTTCACT-AAAACAC
1 GTTTTCAATGAAAACAC
49864736 TTCAATGTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (18 bp):
GTTTTCAATGAAAACACA
Found at i:49866540 original size:8 final size:8
Alignment explanation
Indices: 49866523--49866579 Score: 69
Period size: 8 Copynumber: 7.1 Consensus size: 8
49866513 TTGTAACGCC
49866523 CCAAAAAT
1 CCAAAAAT
**
49866531 CCCGAAAT
1 CCAAAAAT
49866539 CCAAAAAT
1 CCAAAAAT
*
49866547 CCCAAAAT
1 CCAAAAAT
49866555 CCAAAAAT
1 CCAAAAAT
* *
49866563 CTAGAAAT
1 CCAAAAAT
49866571 CCAAAAAT
1 CCAAAAAT
49866579 C
1 C
49866580 TCGAAATCCT
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
8 39 1.00
ACGTcount: A:0.54, C:0.28, G:0.04, T:0.14
Consensus pattern (8 bp):
CCAAAAAT
Found at i:49866544 original size:16 final size:16
Alignment explanation
Indices: 49866523--49866588 Score: 96
Period size: 16 Copynumber: 4.1 Consensus size: 16
49866513 TTGTAACGCC
49866523 CCAAAAATCCCGAAAT
1 CCAAAAATCCCGAAAT
*
49866539 CCAAAAATCCCAAAAT
1 CCAAAAATCCCGAAAT
**
49866555 CCAAAAATCTAGAAAT
1 CCAAAAATCCCGAAAT
*
49866571 CCAAAAATCTCGAAAT
1 CCAAAAATCCCGAAAT
49866587 CC
1 CC
49866589 TGAATTATAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 45 1.00
ACGTcount: A:0.52, C:0.29, G:0.05, T:0.15
Consensus pattern (16 bp):
CCAAAAATCCCGAAAT
Found at i:49867984 original size:29 final size:29
Alignment explanation
Indices: 49867946--49868053 Score: 139
Period size: 29 Copynumber: 3.8 Consensus size: 29
49867936 TGAATGTGAC
49867946 TGGGCCTAATGGGCCATATACATGTGATT
1 TGGGCCTAATGGGCCATATACATGTGATT
* *
49867975 TGGGCCTAATAGGCCATATACAGGTGATT
1 TGGGCCTAATGGGCCATATACATGTGATT
*
49868004 TGGGCCTAATGGGCCATATGA-ATATGA-T
1 TGGGCCTAATGGGCCATAT-ACATGTGATT
* * *
49868032 TGGGCTTAATGGTCCAAATACA
1 TGGGCCTAATGGGCCATATACA
49868054 GGTATGTGAA
Statistics
Matches: 69, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
27 1 0.01
28 18 0.26
29 49 0.71
30 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.29
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATACATGTGATT
Found at i:49868014 original size:58 final size:57
Alignment explanation
Indices: 49867946--49868056 Score: 154
Period size: 58 Copynumber: 1.9 Consensus size: 57
49867936 TGAATGTGAC
* *
49867946 TGGGCCTAATGGGCCATAT-ACATGTGATTTGGGCCTAATAGG-CCATATACAGGTGATT
1 TGGGCCTAATGGGCCATATGA-ATATGA-TTGGGCCTAAT-GGTCCAAATACAGGTGATT
*
49868004 TGGGCCTAATGGGCCATATGAATATGATTGGGCTTAATGGTCCAAATACAGGT
1 TGGGCCTAATGGGCCATATGAATATGATTGGGCCTAATGGTCCAAATACAGGT
49868057 ATGTGAAATT
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
56 2 0.04
57 21 0.44
58 24 0.50
59 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (57 bp):
TGGGCCTAATGGGCCATATGAATATGATTGGGCCTAATGGTCCAAATACAGGTGATT
Found at i:49870065 original size:27 final size:26
Alignment explanation
Indices: 49870017--49870076 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
49870007 ACGAGGCTGC
*
49870017 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
49870044 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
49870070 CAGATAT
1 CAGATAT
49870077 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:49882579 original size:27 final size:27
Alignment explanation
Indices: 49882531--49882603 Score: 74
Period size: 27 Copynumber: 2.7 Consensus size: 27
49882521 AAATAGAGCA
* * * *
49882531 TACCACTAAGGCAATCCATTCAGAGTT
1 TACCACAAAGGCTATTCTTTCAGAGTT
* * *
49882558 TATCATAAAGGTTATTCTTTCAGAGTT
1 TACCACAAAGGCTATTCTTTCAGAGTT
*
49882585 TGCCACAAAGGCTATTCTT
1 TACCACAAAGGCTATTCTT
49882604 AGCTGTCGTG
Statistics
Matches: 35, Mismatches: 11, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (27 bp):
TACCACAAAGGCTATTCTTTCAGAGTT
Found at i:49882906 original size:14 final size:14
Alignment explanation
Indices: 49882884--49882930 Score: 58
Period size: 14 Copynumber: 3.2 Consensus size: 14
49882874 TACACCTGAA
49882884 CAGAACATACATCT
1 CAGAACATACATCT
* *
49882898 CATAACATACATTT
1 CAGAACATACATCT
49882912 CAGAACTATACATACT
1 CAGAAC-ATACAT-CT
49882928 CAG
1 CAG
49882931 CCATACTCAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 17 0.63
15 6 0.22
16 4 0.15
ACGTcount: A:0.43, C:0.26, G:0.06, T:0.26
Consensus pattern (14 bp):
CAGAACATACATCT
Found at i:49886199 original size:34 final size:34
Alignment explanation
Indices: 49886153--49886251 Score: 103
Period size: 34 Copynumber: 2.9 Consensus size: 34
49886143 TTGAACAATC
* ** *
49886153 TAGGCCTAAGCCCATATCAGTTGCAATATTAGTG
1 TAGGCCTTAGCCCATATCAGTAACAATATCAGTG
* *
49886187 TGGGCCTTAGCCCAATAT-AGTAACAGTATCAGTG
1 TAGGCCTTAGCCC-ATATCAGTAACAATATCAGTG
* *
49886221 TAGGCCTTAGCCCATTTCAGT-ACAGTATCAG
1 TAGGCCTTAGCCCATATCAGTAACAATATCAG
49886252 AAATGCATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
33 13 0.24
34 38 0.69
35 4 0.07
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (34 bp):
TAGGCCTTAGCCCATATCAGTAACAATATCAGTG
Found at i:49890127 original size:46 final size:46
Alignment explanation
Indices: 49890065--49890430 Score: 554
Period size: 46 Copynumber: 8.0 Consensus size: 46
49890055 TTTGACATGA
* * * * * * *
49890065 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGC
* * *
49890111 TGTCATGGTATCTTTCAACCATGGTCTTACAAATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
* *
49890157 TGCCATGGTATCTTTCAACGATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
49890203 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
* *
49890249 TGCCATGGTATCTTTCAACCATTGCCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
*
49890295 TGCCATGGTATCTTCCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
*
49890341 TGCCATGGTATATTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
**
49890387 TGCCATGGTATCTTTCAACCATGGTCTTACATGTTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
49890431 AGAGCACACT
Statistics
Matches: 296, Mismatches: 23, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 4 0.01
46 292 0.99
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.37
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
Found at i:49892861 original size:30 final size:30
Alignment explanation
Indices: 49892794--49892861 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
49892784 TACCCTTAAA
* * *
49892794 ATATTTGCACTATTAGTCCTTCAACTTTTC
1 ATATTTACACTATTAATCCTTCAAATTTTC
*
49892824 ATATTTACACT-TTAATCCTTCAAATTTTG
1 ATATTTACACTATTAATCCTTCAAATTTTC
49892853 AGTATTTAC
1 A-TATTTAC
49892862 TCTTGGGCCA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.28, C:0.19, G:0.06, T:0.47
Consensus pattern (30 bp):
ATATTTACACTATTAATCCTTCAAATTTTC
Found at i:49894345 original size:30 final size:30
Alignment explanation
Indices: 49894278--49894345 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 30
49894268 CACCCTTAAA
* *
49894278 ATATTTGCACTATTAGTCCTTCAAATTTTC
1 ATATTTACACTATTAATCCTTCAAATTTTC
*
49894308 ATATTTACACT-TTAATCCTTCAAATTTTG
1 ATATTTACACTATTAATCCTTCAAATTTTC
49894337 AGTATTTAC
1 A-TATTTAC
49894346 TCTTGGGCCA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
29 17 0.50
30 17 0.50
ACGTcount: A:0.29, C:0.18, G:0.06, T:0.47
Consensus pattern (30 bp):
ATATTTACACTATTAATCCTTCAAATTTTC
Found at i:49898759 original size:26 final size:26
Alignment explanation
Indices: 49898738--49898791 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
49898728 TACCAATAGT
* *
49898738 AGTAACATAGCAGGGCTGCCAATAAC
1 AGTAACACAGCAAGGCTGCCAATAAC
* *
49898764 AGTATCACAGCAAGGCTGCCAGTAAC
1 AGTAACACAGCAAGGCTGCCAATAAC
49898790 AG
1 AG
49898792 AATGACTAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.15
Consensus pattern (26 bp):
AGTAACACAGCAAGGCTGCCAATAAC
Found at i:49898882 original size:32 final size:32
Alignment explanation
Indices: 49898846--49898915 Score: 77
Period size: 32 Copynumber: 2.2 Consensus size: 32
49898836 GATGGCCTAA
* * * * *
49898846 AGCCATCAGTAGCTATAGTATGTTTGGCACAG
1 AGCCATCAGTAACGATAATATGATCGGCACAG
* *
49898878 AGCCATTAGTAACGGTAATATGATCGGCACAG
1 AGCCATCAGTAACGATAATATGATCGGCACAG
49898910 AGCCAT
1 AGCCAT
49898916 AATCAGATCA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.24
Consensus pattern (32 bp):
AGCCATCAGTAACGATAATATGATCGGCACAG
Found at i:49899058 original size:43 final size:43
Alignment explanation
Indices: 49898965--49899073 Score: 137
Period size: 43 Copynumber: 2.5 Consensus size: 43
49898955 GTCGTCTTGC
* *
49898965 GCGACCCATGCAACCTGAACAGAACAGTCCACAGTCGTCTCAT
1 GCGACCCGTGCAACCTTAACAGAACAGTCCACAGTCGTCTCAT
* * * *
49899008 GCAACCCGTGCAACCTTAATAGAATAGTCCACAGTCGTCTCGT
1 GCGACCCGTGCAACCTTAACAGAACAGTCCACAGTCGTCTCAT
* **
49899051 GTGACCCGTGTGACCTTAACAGA
1 GCGACCCGTGCAACCTTAACAGA
49899074 TCAATACTGG
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 55 1.00
ACGTcount: A:0.28, C:0.31, G:0.20, T:0.20
Consensus pattern (43 bp):
GCGACCCGTGCAACCTTAACAGAACAGTCCACAGTCGTCTCAT
Found at i:49899474 original size:27 final size:27
Alignment explanation
Indices: 49899370--49899475 Score: 108
Period size: 27 Copynumber: 4.0 Consensus size: 27
49899360 TTACCCTACA
** * *
49899370 GGGGTATTTCAATAATTTTACAAATTA
1 GGGGTATTTCGGTAATTTTACAAACTC
* *
49899397 GGGGTATTTTGGTAATTTTA-AAAATC
1 GGGGTATTTCGGTAATTTTACAAACTC
*
49899423 GGGGGTATTTCGATAA-TTTACAAACTC
1 -GGGGTATTTCGGTAATTTTACAAACTC
* *
49899450 GGGCTATTTCGGTAATCTTACAAACT
1 GGGGTATTTCGGTAATTTTACAAACT
49899476 GAGGGCCTTA
Statistics
Matches: 65, Mismatches: 11, Indels: 6
0.79 0.13 0.07
Matches are distributed among these distances:
26 21 0.32
27 44 0.68
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (27 bp):
GGGGTATTTCGGTAATTTTACAAACTC
Found at i:49905737 original size:21 final size:20
Alignment explanation
Indices: 49905686--49905738 Score: 52
Period size: 22 Copynumber: 2.5 Consensus size: 20
49905676 AGTTCAAACT
*
49905686 ATAAAGACAAAAAAAACAAT
1 ATAAAGACAAAAAAAACAAC
* **
49905706 AAAAAGAACAATAAAAATTAAC
1 ATAAAG-ACAA-AAAAAACAAC
49905728 ATAAAGACAAA
1 ATAAAGACAAA
49905739 TGGACTCAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
20 6 0.23
21 8 0.31
22 12 0.46
ACGTcount: A:0.74, C:0.09, G:0.06, T:0.11
Consensus pattern (20 bp):
ATAAAGACAAAAAAAACAAC
Found at i:49906573 original size:19 final size:21
Alignment explanation
Indices: 49906549--49906596 Score: 64
Period size: 19 Copynumber: 2.4 Consensus size: 21
49906539 TCAAGAAAGC
*
49906549 AATAATAAGCAACAAT-AAT-
1 AATAATAAGAAACAATGAATA
*
49906568 AATAATAATAAACAATGAATA
1 AATAATAAGAAACAATGAATA
49906589 AATAATAA
1 AATAATAA
49906597 AAATAAAACC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 14 0.56
20 3 0.12
21 8 0.32
ACGTcount: A:0.67, C:0.06, G:0.04, T:0.23
Consensus pattern (21 bp):
AATAATAAGAAACAATGAATA
Found at i:49906659 original size:19 final size:19
Alignment explanation
Indices: 49906635--49906678 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
49906625 ATTAGGAAAT
49906635 AAATAATTAAT-AATAATAA
1 AAATAATTAATGAATAA-AA
*
49906654 AAATAA-TAATGAATAAAG
1 AAATAATTAATGAATAAAA
49906672 AAATAAT
1 AAATAAT
49906679 AAAGAAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 11 0.50
19 11 0.50
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (19 bp):
AAATAATTAATGAATAAAA
Found at i:49923261 original size:38 final size:38
Alignment explanation
Indices: 49923210--49923476 Score: 156
Period size: 38 Copynumber: 6.3 Consensus size: 38
49923200 ATGGAAAAAT
* * *
49923210 GTGGTTCTGAGTGGATATACCACGGTTATACGTGTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTATACATGTAAC
*
49923248 GTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGTAAC
1 GTGGTGCTAAGTGGATATACCACG---------GTT-ATACATGTAAC
* *
49923296 GTGGTGCTAAGTGGATATGCCACGGTTGCATATATCAATTCATTAAC
1 GTGGTGCTAAGTGGATATACCACGG-T---TATA-C-A-T--GTAAC
* * *
49923343 ATGGTGCTAAGTGGATATACCACGGTTAAACATGTAAT
1 GTGGTGCTAAGTGGATATACCACGGTTATACATGTAAC
* *
49923381 GTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTCATTAAC
1 GTGGTGCTAAGTGGATATACCACGG-T---TATA-C-A-T--GTAAC
* *
49923428 ATGGTGCTAAGTGGATATACCACGGTTAAACATGTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTATACATGTAAC
*
49923466 GTGCTGCTAAG
1 GTGGTGCTAAG
49923477 AAAGAAACGA
Statistics
Matches: 178, Mismatches: 23, Indels: 56
0.69 0.09 0.22
Matches are distributed among these distances:
38 61 0.34
39 1 0.01
40 3 0.02
41 2 0.01
42 8 0.04
43 9 0.05
44 2 0.01
45 2 0.01
46 2 0.01
47 55 0.31
48 33 0.19
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (38 bp):
GTGGTGCTAAGTGGATATACCACGGTTATACATGTAAC
Found at i:49923366 original size:47 final size:47
Alignment explanation
Indices: 49923244--49923455 Score: 244
Period size: 47 Copynumber: 4.7 Consensus size: 47
49923234 GTTATACGTG
* * * *
49923244 TAACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACAT
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATCGATTCAT
* * *
49923291 GTAACGTGGTGCTAAGTGGATATGCCACGGTTGCATATATCAATTCAT
1 -TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATCGATTCAT
* *
49923339 TAACATGGTGCTAAGTGGATATACCACGGTT--A-A-A-C-A-T--G
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATCGATTCAT
* *
49923377 TAATGTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTCAT
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATCGATTCAT
*
49923424 TAACATGGTGCTAAGTGGATATACCACGGTTA
1 TAACGTGGTGCTAAGTGGATATACCACGGTTA
49923456 AACATGTAAC
Statistics
Matches: 138, Mismatches: 17, Indels: 19
0.79 0.10 0.11
Matches are distributed among these distances:
38 28 0.20
40 2 0.01
41 2 0.01
42 2 0.01
43 2 0.01
44 2 0.01
45 2 0.01
47 58 0.42
48 40 0.29
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (47 bp):
TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATCGATTCAT
Found at i:49923389 original size:85 final size:85
Alignment explanation
Indices: 49923287--49923476 Score: 344
Period size: 85 Copynumber: 2.2 Consensus size: 85
49923277 ACATATTGAT
*
49923287 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTGCATATATCAATTCATTAACATGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCAATTCATTAACATGGTGCTA
49923352 AGTGGATATACCACGGTTAA
66 AGTGGATATACCACGGTTAA
* *
49923372 ACATGTAATGTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTCATTAACATGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCAATTCATTAACATGGTGCTA
49923437 AGTGGATATACCACGGTTAA
66 AGTGGATATACCACGGTTAA
*
49923457 ACATGTAACGTGCTGCTAAG
1 ACATGTAACGTGGTGCTAAG
49923477 AAAGAAACGA
Statistics
Matches: 100, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 100 1.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (85 bp):
ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCAATTCATTAACATGGTGCTA
AGTGGATATACCACGGTTAA
Found at i:49925907 original size:15 final size:15
Alignment explanation
Indices: 49925887--49925928 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
49925877 GCTGTAAATA
49925887 GGATTTCCTTATCAT
1 GGATTTCCTTATCAT
* *
49925902 GGATTTCTTTATCTT
1 GGATTTCCTTATCAT
49925917 GGATTTCCTTAT
1 GGATTTCCTTAT
49925929 TCTGGGCTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.52
Consensus pattern (15 bp):
GGATTTCCTTATCAT
Found at i:49928471 original size:38 final size:38
Alignment explanation
Indices: 49928420--49928747 Score: 224
Period size: 38 Copynumber: 7.9 Consensus size: 38
49928410 TGGAAAAATA
* * *
49928420 TGGTGTTAAGTGGATATACCATGGTTATACGTGTAACG
1 TGGTGCTAAGTGGATATACCACGGTTATACATGTAACG
*
49928458 TGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGTAACG
1 TGGTGCTAAGTGGATATACCACG---------GTT-ATACATGTAACG
* * * *
49928506 TGGTGCTAAGTGAATATACCACGGTTAAACATATAAAG
1 TGGTGCTAAGTGGATATACCACGGTTATACATGTAACG
* * * *
49928544 TGGTGCTAGGTGGATATGCCACAGTTACATATATCGATTCATTAACG
1 TGGTGCTAAGTGGATATACCAC-GGT---TATA-C-A-T--GTAACG
* * *
49928591 TTGTGCTAAGTGGATATACCACGGTTAAACATGCAACG
1 TGGTGCTAAGTGGATATACCACGGTTATACATGTAACG
* * *
49928629 TGGTGCTAAGCGGATATGCCACGGTTACATATATCAATTCATTAACG
1 TGGTGCTAAGTGGATATACCACGG-T---TATA-C-A-T--GTAACG
*
49928676 TGGTGCTAAGTGGATATACCACGGTTAAACATGTAACG
1 TGGTGCTAAGTGGATATACCACGGTTATACATGTAACG
*
49928714 TGGTGCTAAGTGGATATGCCACGGTTATACATGT
1 TGGTGCTAAGTGGATATACCACGGTTATACATGT
49928748 TAATTTGAAA
Statistics
Matches: 227, Mismatches: 35, Indels: 56
0.71 0.11 0.18
Matches are distributed among these distances:
38 111 0.49
39 5 0.02
40 2 0.01
41 2 0.01
42 8 0.04
43 8 0.04
44 2 0.01
45 2 0.01
46 3 0.01
47 51 0.22
48 33 0.15
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (38 bp):
TGGTGCTAAGTGGATATACCACGGTTATACATGTAACG
Found at i:49928523 original size:48 final size:48
Alignment explanation
Indices: 49928446--49928539 Score: 152
Period size: 48 Copynumber: 2.0 Consensus size: 48
49928436 TACCATGGTT
* * *
49928446 ATACGTGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGAATATACCACGATTAAACATATTG
*
49928494 ATACATGTAACGTGGTGCTAAGTGAATATACCACGGTTAAACATAT
1 ATACATGTAACGTGGTGCTAAGTGAATATACCACGATTAAACATAT
49928540 AAAGTGGTGC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (48 bp):
ATACATGTAACGTGGTGCTAAGTGAATATACCACGATTAAACATATTG
Found at i:49928614 original size:85 final size:85
Alignment explanation
Indices: 49928420--49928740 Score: 471
Period size: 85 Copynumber: 3.8 Consensus size: 85
49928410 TGGAAAAATA
* * * * * *
49928420 TGGTGTTAAGTGGATATACCATGGTTATACGTGTAACGTGGTGCTAAGTGGATATACCACGATTA
1 TGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
* * *
49928485 CACATATTGATACATGTAACG
66 CATATATCGATTCAT-TAACG
* * * * *
49928506 TGGTGCTAAGTGAATATACCACGGTTAAACATATAAAGTGGTGCTAGGTGGATATGCCACAGTTA
1 TGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
49928571 CATATATCGATTCATTAACG
66 CATATATCGATTCATTAACG
* * *
49928591 TTGTGCTAAGTGGATATACCACGGTTAAACATGCAACGTGGTGCTAAGCGGATATGCCACGGTTA
1 TGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
*
49928656 CATATATCAATTCATTAACG
66 CATATATCGATTCATTAACG
49928676 TGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
1 TGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
49928741 TACATGTTAA
Statistics
Matches: 209, Mismatches: 26, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
85 143 0.68
86 66 0.32
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (85 bp):
TGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
CATATATCGATTCATTAACG
Found at i:49940519 original size:20 final size:21
Alignment explanation
Indices: 49940496--49940536 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
49940486 AATAAACACA
*
49940496 TTAT-AAAAAAGTATTAAATG
1 TTATAAAAAAAATATTAAATG
49940516 TTATAAAAAAAATATTAAATG
1 TTATAAAAAAAATATTAAATG
49940537 ATAATGTGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.34
Consensus pattern (21 bp):
TTATAAAAAAAATATTAAATG
Found at i:49941020 original size:19 final size:20
Alignment explanation
Indices: 49940998--49941035 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
49940988 ATAAAATTTA
49940998 ATTTGA-ATATGTAAATCAT
1 ATTTGAGATATGTAAATCAT
*
49941017 ATTTGAGATATTTAAATCA
1 ATTTGAGATATGTAAATCA
49941036 CACATAAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.42, C:0.05, G:0.11, T:0.42
Consensus pattern (20 bp):
ATTTGAGATATGTAAATCAT
Found at i:49949396 original size:13 final size:13
Alignment explanation
Indices: 49949378--49949402 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49949368 ATCTATTTAC
49949378 TAATTTTTTTATA
1 TAATTTTTTTATA
49949391 TAATTTTTTTAT
1 TAATTTTTTTAT
49949403 TGGGCCAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (13 bp):
TAATTTTTTTATA
Found at i:49950244 original size:19 final size:20
Alignment explanation
Indices: 49950220--49950257 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
49950210 GGTACCACCA
49950220 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
49950239 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
49950258 ACCACATTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:49950646 original size:46 final size:45
Alignment explanation
Indices: 49950480--49950654 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 45
49950470 GTAACCCGAC
* * * * *
49950480 CCTAAGTGAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * * *
49950525 CCGTAAATGAACTCGGACTCAACTCAACTAGTTCGGATGCCTAGTTACAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* *
49950575 -CTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
49950618 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
49950655 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 16, Indels: 15
0.77 0.12 0.11
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 4 0.04
46 58 0.55
47 28 0.26
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:49950651 original size:93 final size:93
Alignment explanation
Indices: 49950487--49950657 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
49950477 GACCCTAAGT
* * *
49950487 GAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGCATCCGTAAATGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
*
49950552 CTAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
49950580 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
49950645 CGAGTTCGGATGC
66 CGAGTTCGGATGC
49950658 TCAACCATCC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:49952622 original size:17 final size:17
Alignment explanation
Indices: 49952599--49952648 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
49952589 GACAATGTGT
49952599 GAGCTATGTTTACATGC
1 GAGCTATGTTTACATGC
* * * *
49952616 TAGCTATCTTTATATCC
1 GAGCTATGTTTACATGC
*
49952633 GAGCTGTGTTTACATG
1 GAGCTATGTTTACATG
49952649 TGAACTGTGT
Statistics
Matches: 24, Mismatches: 9, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.40
Consensus pattern (17 bp):
GAGCTATGTTTACATGC
Found at i:49954260 original size:27 final size:27
Alignment explanation
Indices: 49954239--49954318 Score: 115
Period size: 27 Copynumber: 3.0 Consensus size: 27
49954229 CTATTCAGTT
*
49954239 AGAGTTTGCCATATGTATTATTCCTTC
1 AGAGTTTGCCATATGTACTATTCCTTC
* *
49954266 AGTGTTTGCCATATGAACTATTCCTTC
1 AGAGTTTGCCATATGTACTATTCCTTC
* *
49954293 AGAGTTCGCCATATTTACTATTCCTT
1 AGAGTTTGCCATATGTACTATTCCTT
49954319 TTGTGTTTAC
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.23, C:0.21, G:0.14, T:0.42
Consensus pattern (27 bp):
AGAGTTTGCCATATGTACTATTCCTTC
Found at i:49954331 original size:27 final size:27
Alignment explanation
Indices: 49954242--49954333 Score: 112
Period size: 27 Copynumber: 3.4 Consensus size: 27
49954232 TTCAGTTAGA
*
49954242 GTTTGCCATATGTATTATTCCTTCAGT
1 GTTTGCCATATGTACTATTCCTTCAGT
* *
49954269 GTTTGCCATATGAACTATTCCTTCAGA
1 GTTTGCCATATGTACTATTCCTTCAGT
* * **
49954296 GTTCGCCATATTTACTATTCCTTTTGT
1 GTTTGCCATATGTACTATTCCTTCAGT
*
49954323 GTTTACCATAT
1 GTTTGCCATAT
49954334 CTTCTAGTCT
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.21, C:0.21, G:0.13, T:0.46
Consensus pattern (27 bp):
GTTTGCCATATGTACTATTCCTTCAGT
Found at i:49954348 original size:54 final size:54
Alignment explanation
Indices: 49954239--49954350 Score: 125
Period size: 54 Copynumber: 2.1 Consensus size: 54
49954229 CTATTCAGTT
* * * * *
49954239 AGAGTTTGCCATATGTATTATTCCTTCAGTGTTTGCCATATGAACTATTCCTTC
1 AGAGTTCGCCATATGTACTATTCCTTCAGTGTTTACCATATCAACTAGTCCTTC
* ** ** *
49954293 AGAGTTCGCCATATTTACTATTCCTTTTGTGTTTACCATATCTTCTAGTCTTTC
1 AGAGTTCGCCATATGTACTATTCCTTCAGTGTTTACCATATCAACTAGTCCTTC
49954347 AGAG
1 AGAG
49954351 CTAACCACAA
Statistics
Matches: 47, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 47 1.00
ACGTcount: A:0.21, C:0.21, G:0.14, T:0.44
Consensus pattern (54 bp):
AGAGTTCGCCATATGTACTATTCCTTCAGTGTTTACCATATCAACTAGTCCTTC
Found at i:49954448 original size:27 final size:27
Alignment explanation
Indices: 49954383--49954452 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
49954373 CGGGGCCTAC
49954383 CATACTTACCATTCTT-CAAAGCTAGT
1 CATACTTACCATTCTTCCAAAGCTAGT
* * ** * *
49954409 CATACCTATCATTCTTCCATGGTTTGT
1 CATACTTACCATTCTTCCAAAGCTAGT
49954436 CATACTTACCATTCTTC
1 CATACTTACCATTCTTC
49954453 TTTGTCAAGG
Statistics
Matches: 35, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
26 14 0.40
27 21 0.60
ACGTcount: A:0.24, C:0.29, G:0.07, T:0.40
Consensus pattern (27 bp):
CATACTTACCATTCTTCCAAAGCTAGT
Found at i:49957736 original size:7 final size:7
Alignment explanation
Indices: 49957720--49957868 Score: 50
Period size: 7 Copynumber: 21.9 Consensus size: 7
49957710 AATAAATGAA
*
49957720 ATAATTT
1 ATAATAT
49957727 ATAATAT
1 ATAATAT
49957734 ATAATAT
1 ATAATAT
*
49957741 A-AAAAT
1 ATAATAT
* *
49957747 GTAAGTTT
1 ATAA-TAT
*
49957755 TTAA-A-
1 ATAATAT
*
49957760 ATAATGT
1 ATAATAT
49957767 ATAATAT
1 ATAATAT
*
49957774 A-AATAA
1 ATAATAT
49957780 AT-ATAT
1 ATAATAT
49957786 A-AGATAT
1 ATA-ATAT
49957793 ATAAGT-T
1 ATAA-TAT
49957800 A-AA-AT
1 ATAATAT
49957805 ATAATAT
1 ATAATAT
49957812 ATAATA-
1 ATAATAT
*
49957818 ATAATTT
1 ATAATAT
*
49957825 ACAA-ATT
1 ATAATA-T
* *
49957832 TTGAAAAT
1 AT-AATAT
49957840 ATAAATAAT
1 AT-AAT-AT
*
49957849 ATAATAA
1 ATAATAT
49957856 ATAATAT
1 ATAATAT
49957863 ATAATA
1 ATAATA
49957869 AATTAAAAAT
Statistics
Matches: 103, Mismatches: 22, Indels: 34
0.65 0.14 0.21
Matches are distributed among these distances:
5 5 0.05
6 22 0.21
7 56 0.54
8 15 0.15
9 5 0.05
ACGTcount: A:0.57, C:0.01, G:0.04, T:0.38
Consensus pattern (7 bp):
ATAATAT
Found at i:49957794 original size:21 final size:21
Alignment explanation
Indices: 49957770--49957814 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
49957760 ATAATGTATA
49957770 ATATAA-ATAAATATATAAGAT
1 ATATAAGATAAA-ATATAAGAT
* *
49957791 ATATAAGTTAAAATATAATAT
1 ATATAAGATAAAATATAAGAT
49957812 ATA
1 ATA
49957815 ATAATAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (21 bp):
ATATAAGATAAAATATAAGAT
Found at i:49958227 original size:17 final size:18
Alignment explanation
Indices: 49958174--49958271 Score: 146
Period size: 18 Copynumber: 5.5 Consensus size: 18
49958164 AATCATATCT
*
49958174 TCTAAGATTGTATATCATA
1 TCTAAGATTG-CTATCATA
*
49958193 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
49958211 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
49958228 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
49958246 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
49958263 TCTAAGATT
1 TCTAAGATT
49958272 ACATATCATT
Statistics
Matches: 73, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
17 31 0.42
18 32 0.44
19 10 0.14
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.39
Consensus pattern (18 bp):
TCTAAGATTGCTATCATA
Found at i:49958232 original size:35 final size:35
Alignment explanation
Indices: 49958174--49958280 Score: 178
Period size: 35 Copynumber: 3.0 Consensus size: 35
49958164 AATCATATCT
49958174 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
49958211 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
*
49958246 TCTAAGATTGTATCATATCTAAGATTACATATCAT
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCAT
49958281 TGAAGATTAT
Statistics
Matches: 68, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
35 53 0.78
36 5 0.07
37 10 0.15
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.38
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:49967239 original size:44 final size:44
Alignment explanation
Indices: 49967167--49967254 Score: 122
Period size: 44 Copynumber: 2.0 Consensus size: 44
49967157 ATTACATGTA
49967167 TCGCATCCATAATGAACTCAAACAAACTCAACGAGCTCAGATGC
1 TCGCATCCATAATGAACTCAAACAAACTCAACGAGCTCAGATGC
* *** * *
49967211 TCGCATCCATAGTGAACTTGGACCAACTCAACGAGCTCGGATGC
1 TCGCATCCATAATGAACTCAAACAAACTCAACGAGCTCAGATGC
49967255 CTCATACATA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.33, C:0.30, G:0.18, T:0.19
Consensus pattern (44 bp):
TCGCATCCATAATGAACTCAAACAAACTCAACGAGCTCAGATGC
Found at i:49970626 original size:40 final size:40
Alignment explanation
Indices: 49970545--49970726 Score: 287
Period size: 40 Copynumber: 4.6 Consensus size: 40
49970535 CAACCAAGTA
** * *
49970545 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
49970584 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
49970624 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
49970664 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
49970704 CCTTCGAGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
49970727 CATCCGAATA
Statistics
Matches: 134, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 13 0.10
40 121 0.90
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:49978683 original size:40 final size:40
Alignment explanation
Indices: 49978602--49978783 Score: 278
Period size: 40 Copynumber: 4.6 Consensus size: 40
49978592 CAACCAAGTA
** * *
49978602 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
49978641 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
49978681 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
49978721 CCTTCAGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
49978761 CCTTCAGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
49978784 CATCCGAATA
Statistics
Matches: 134, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 13 0.10
40 121 0.90
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:49986439 original size:44 final size:44
Alignment explanation
Indices: 49986373--49986458 Score: 120
Period size: 44 Copynumber: 2.0 Consensus size: 44
49986363 TACATGTATT
*
49986373 GCATCCATAATAGACTCGGACCAACTCAACAAGCTCGGATGCTC
1 GCATCCATAATAGACTCAGACCAACTCAACAAGCTCGGATGCTC
* * *
49986417 GCATCCATAATTA-ACTCAGACCAATTCACCGAGCTCGGATGC
1 GCATCCATAA-TAGACTCAGACCAACTCAACAAGCTCGGATGC
49986459 ATCATACATA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
44 35 0.95
45 2 0.05
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.20
Consensus pattern (44 bp):
GCATCCATAATAGACTCAGACCAACTCAACAAGCTCGGATGCTC
Found at i:49988068 original size:50 final size:50
Alignment explanation
Indices: 49987948--49988189 Score: 220
Period size: 49 Copynumber: 4.9 Consensus size: 50
49987938 CAAAGCTATC
* * * * * * * **
49987948 TGGTACGCATAGTAGCCTACACTTAGTACTACAGATGCGACC-AATTACC
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAATAATA
* **
49987997 TGGTACATGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATA
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAATAATA
* * * * *
49988047 TGATACACGTAGTAGCCTGCACTTAGTGCTACACACGTGATCGAAGTTATA
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-TAATA
* * * * *
49988098 TGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC-AATAATC
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAATAATA
* * *
49988147 CGGTACACGTAGTAGCTTTCACATT-GTACTACACACGTGACCT
1 TGGTACACGTAGTAGCCTGCAC-TTAGTACTACACACGTGACCT
49988190 CACAATAGAT
Statistics
Matches: 155, Mismatches: 34, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
49 70 0.45
50 47 0.30
51 38 0.25
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (50 bp):
TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAATAATA
Found at i:49995041 original size:49 final size:49
Alignment explanation
Indices: 49994977--49995151 Score: 244
Period size: 49 Copynumber: 3.5 Consensus size: 49
49994967 CTGGTACGCA
*
49994977 TAGTAGCCTGCACTTAGTACTACACATGTGACTAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
* * * *
49995026 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAT-CGAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-TTATCCG-GTACACG
* *
49995077 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
*
49995126 TAGTAGCTTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
49995152 CATGACCTCA
Statistics
Matches: 111, Mismatches: 11, Indels: 8
0.85 0.08 0.06
Matches are distributed among these distances:
49 63 0.57
50 10 0.09
51 38 0.34
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
Found at i:49995088 original size:51 final size:49
Alignment explanation
Indices: 49994964--49995158 Score: 239
Period size: 49 Copynumber: 3.9 Consensus size: 49
49994954 TAGCCAAAGC
* * * *
49994964 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACTAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
49995013 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-T
* * *
49995064 TAT-CGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCCG-GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* * * *
49995113 AATCCGGTACACGTAGTAGCTTGCACTTAGTACTACACACATGACC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
49995159 TCACAATAGA
Statistics
Matches: 125, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
49 77 0.62
50 10 0.08
51 38 0.30
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:49995143 original size:100 final size:100
Alignment explanation
Indices: 49994970--49995152 Score: 330
Period size: 100 Copynumber: 1.8 Consensus size: 100
49994960 AAGCTATCTG
* * *
49994970 GTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACTAATTATCCGGTACACGTAGTAGCCT
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCCT
49995035 GCACTTAGTACTACACACGTGATCGAAGTTATCGA
66 GCACTTAGTACTACACACGTGATCGAAGTTATCGA
*
49995070 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCTT
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCCT
49995135 GCACTTAGTACTACACAC
66 GCACTTAGTACTACACAC
49995153 ATGACCTCAC
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
100 79 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (100 bp):
GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCCT
GCACTTAGTACTACACACGTGATCGAAGTTATCGA
Found at i:49999532 original size:12 final size:13
Alignment explanation
Indices: 49999515--49999552 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
49999505 ATCCTGGAAT
49999515 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
49999527 ATTAAGAACACATA
1 ATTAAGAACA-AGA
49999541 ATTAAGAACAAG
1 ATTAAGAACAAG
49999553 TCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:49999586 original size:20 final size:20
Alignment explanation
Indices: 49999548--49999586 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
49999538 ATAATTAAGA
* *
49999548 ACAAGTCAAATATTTATAAT
1 ACAAGTCAAATAGTAATAAT
*
49999568 ACAATTCAAATAGTAATAA
1 ACAAGTCAAATAGTAATAA
49999587 CAAGATCCGT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.54, C:0.10, G:0.05, T:0.31
Consensus pattern (20 bp):
ACAAGTCAAATAGTAATAAT
Found at i:50008302 original size:31 final size:31
Alignment explanation
Indices: 50008265--50008329 Score: 121
Period size: 31 Copynumber: 2.1 Consensus size: 31
50008255 TCTTGTAACT
50008265 TTTTCCAAAACCATGATGTGAACCTTGGGTC
1 TTTTCCAAAACCATGATGTGAACCTTGGGTC
*
50008296 TTTTCCAAAACCATGATGTGAACTTTGGGTC
1 TTTTCCAAAACCATGATGTGAACCTTGGGTC
50008327 TTT
1 TTT
50008330 ATCTGATATA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (31 bp):
TTTTCCAAAACCATGATGTGAACCTTGGGTC
Found at i:50017301 original size:29 final size:28
Alignment explanation
Indices: 50017265--50017342 Score: 95
Period size: 29 Copynumber: 2.7 Consensus size: 28
50017255 TCATGAGATT
50017265 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
* *
50017295 -GCACTAAGTGTACGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
50017322 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
50017343 GATTATTAAG
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
27 5 0.12
29 33 0.80
30 3 0.07
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:50017560 original size:174 final size:174
Alignment explanation
Indices: 50017295--50017622 Score: 602
Period size: 174 Copynumber: 1.9 Consensus size: 174
50017285 AAATTGTACA
*
50017295 GCACTAAGTGTACGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTACGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
50017360 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
50017425 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
**
50017469 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTACGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
50017534 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
50017599 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
50017623 ACCTTGAGTT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTACGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:50025391 original size:29 final size:30
Alignment explanation
Indices: 50025324--50025396 Score: 98
Period size: 29 Copynumber: 2.5 Consensus size: 30
50025314 GTCATGAGAT
*
50025324 TGGCACTAAGTGTGCGGGTTTAAATTGTACA
1 TGGCACTAAGTGTGCGAGTTTAAA-TGTACA
*
50025355 --GCAGTAAGTGTGCGAGTTTAAA-GTACA
1 TGGCACTAAGTGTGCGAGTTTAAATGTACA
50025382 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
50025397 ATGGTTGATT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
27 5 0.14
29 32 0.86
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.29
Consensus pattern (30 bp):
TGGCACTAAGTGTGCGAGTTTAAATGTACA
Found at i:50025620 original size:174 final size:174
Alignment explanation
Indices: 50025359--50025682 Score: 585
Period size: 174 Copynumber: 1.9 Consensus size: 174
50025349 TGTACAGCAG
*
50025359 TAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCATGGTTGATTATTAAGCACTATGTGTG
1 TAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCACGGTTGATTATTAAGCACTATGTGTG
* * *
50025424 CGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTATCGAGTCGATTTT
66 CGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAATTTT
50025489 GGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATGGCAC
131 GGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATGGCAC
* *
50025533 TAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTG
1 TAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCACGGTTGATTATTAAGCACTATGTGTG
*
50025598 CGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAATTTT
66 CGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAATTTT
50025663 GGACAGCGGAAAAGGTAAGT
131 GGACAGCGGAAAAGGTAAGT
50025683 ACCTTGAGTT
Statistics
Matches: 143, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
174 143 1.00
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
TAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCACGGTTGATTATTAAGCACTATGTGTG
CGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAATTTT
GGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATGGCAC
Found at i:50028188 original size:21 final size:22
Alignment explanation
Indices: 50028148--50028193 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
50028138 ATGACCCCTG
*
50028148 TTTCCAAAATTTTTCCTTTT-T
1 TTTCCAAAATTTTTCATTTTAT
50028169 TTTCCAAAA-TTTTCTATTTTAT
1 TTTCCAAAATTTTTC-ATTTTAT
50028191 TTT
1 TTT
50028194 AAAATGATCC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 5 0.23
21 13 0.59
22 4 0.18
ACGTcount: A:0.22, C:0.15, G:0.00, T:0.63
Consensus pattern (22 bp):
TTTCCAAAATTTTTCATTTTAT
Found at i:50034907 original size:30 final size:30
Alignment explanation
Indices: 50034871--50034937 Score: 91
Period size: 30 Copynumber: 2.2 Consensus size: 30
50034861 GTTCTTAAGC
* * *
50034871 TTAATTTTTATCCTAATAAATC-CTTTATTT
1 TTAATTTGTATCCAAATAAATCTC-TAATTT
50034901 TTAATTTGTATCCAAATAAATCTCTAATTT
1 TTAATTTGTATCCAAATAAATCTCTAATTT
50034931 TTAATTT
1 TTAATTT
50034938 ATACTTAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
30 32 0.97
31 1 0.03
ACGTcount: A:0.33, C:0.12, G:0.01, T:0.54
Consensus pattern (30 bp):
TTAATTTGTATCCAAATAAATCTCTAATTT
Found at i:50036743 original size:61 final size:62
Alignment explanation
Indices: 50036627--50036745 Score: 154
Period size: 61 Copynumber: 1.9 Consensus size: 62
50036617 CCTTGAATTA
* * *
50036627 TTTTTAAAATTTTTAATTAAGCTCTTCAAAATTTTGAAAATTTCTATTTACCTTTTAATTTG
1 TTTTGAAAATTTTTAATCAAGCTCTTCAAAATTTTGAAAATTTCTATTAACCTTTTAATTTG
* *
50036689 TTTTGAAAA-TTTTAATCAAGCT-TTCTAAAATTTTGGAAATTT-TGATTAATCTTTTAA
1 TTTTGAAAATTTTTAATCAAGCTCTTC-AAAATTTTGAAAATTTCT-ATTAACCTTTTAA
50036746 AAAATTAAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
60 4 0.08
61 38 0.76
62 8 0.16
ACGTcount: A:0.34, C:0.08, G:0.07, T:0.51
Consensus pattern (62 bp):
TTTTGAAAATTTTTAATCAAGCTCTTCAAAATTTTGAAAATTTCTATTAACCTTTTAATTTG
Found at i:50043335 original size:43 final size:43
Alignment explanation
Indices: 50043283--50043420 Score: 127
Period size: 43 Copynumber: 3.2 Consensus size: 43
50043273 TAGGGTCTTT
*
50043283 CACGAAATCGATTAACGATGCCAATGTCCCAGACATAGTATTA
1 CACGTAATCGATTAACGATGCCAATGTCCCAGACATAGTATTA
* * * *
50043326 CACGTAATCG-TATAATGATGCCAATGTCCTAGACATGGTCTTA
1 CACGTAATCGAT-TAACGATGCCAATGTCCCAGACATAGTATTA
* * ** * * *
50043369 TACATAATC-ACAATACAATGCCAATGTCCCAGACATTGTGTTA
1 CACGTAATCGATTA-ACGATGCCAATGTCCCAGACATAGTATTA
*
50043412 CATGTAATC
1 CACGTAATC
50043421 TCATCTCGGT
Statistics
Matches: 75, Mismatches: 17, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
42 2 0.03
43 73 0.97
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28
Consensus pattern (43 bp):
CACGTAATCGATTAACGATGCCAATGTCCCAGACATAGTATTA
Found at i:50052155 original size:43 final size:43
Alignment explanation
Indices: 50052090--50052223 Score: 150
Period size: 43 Copynumber: 3.1 Consensus size: 43
50052080 AGCTCACACA
* *
50052090 ATGCCATATCCCAGATATGGTCTTACATGTAAAT-AC-ATATCG
1 ATGCCATATCCCAGACATGGTCTTACACGTAAATCACAATA-CG
*
50052132 ATGCCACTATCCCAGACAGGGTCTTACACG-AAATCACAATACG
1 ATGCCA-TATCCCAGACATGGTCTTACACGTAAATCACAATACG
* * * *
50052175 ATGTCAATGTCCCAGACATGGTCTTACACGT-AATCTCAATACA
1 ATG-CCATATCCCAGACATGGTCTTACACGTAAATCACAATACG
50052218 ATGCCA
1 ATGCCA
50052224 ATGTCCAATT
Statistics
Matches: 78, Mismatches: 9, Indels: 10
0.80 0.09 0.10
Matches are distributed among these distances:
42 12 0.15
43 61 0.78
44 5 0.06
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (43 bp):
ATGCCATATCCCAGACATGGTCTTACACGTAAATCACAATACG
Found at i:50061767 original size:25 final size:25
Alignment explanation
Indices: 50061725--50061773 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
50061715 CTTTATTATT
* *
50061725 ATCATTATGAAGAATTATGTGATTA
1 ATCATTATCAAGAATTATATGATTA
* *
50061750 ATCATTATCATGAGTTATATGATT
1 ATCATTATCAAGAATTATATGATT
50061774 GGTCCTCTAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.37, C:0.06, G:0.14, T:0.43
Consensus pattern (25 bp):
ATCATTATCAAGAATTATATGATTA
Found at i:50062046 original size:40 final size:40
Alignment explanation
Indices: 50061996--50062092 Score: 167
Period size: 40 Copynumber: 2.4 Consensus size: 40
50061986 TTGCGAATAC
*
50061996 CTGATAGCTTGTGTGAGTAGCTCATATAGCTATATCCTGA
1 CTGACAGCTTGTGTGAGTAGCTCATATAGCTATATCCTGA
*
50062036 CTGACAGCTTGTGTGAGTAGCTCATGTAGCTATATCCTGA
1 CTGACAGCTTGTGTGAGTAGCTCATATAGCTATATCCTGA
*
50062076 CTAACAGCTTGTGTGAG
1 CTGACAGCTTGTGTGAG
50062093 CAGACCCGTG
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 54 1.00
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.33
Consensus pattern (40 bp):
CTGACAGCTTGTGTGAGTAGCTCATATAGCTATATCCTGA
Found at i:50062807 original size:171 final size:171
Alignment explanation
Indices: 50062522--50062877 Score: 631
Period size: 171 Copynumber: 2.1 Consensus size: 171
50062512 GTTAACCCTC
50062522 ACACGCCCGTGTGGAGGCAATGCACACGCCCGTGTACTTTGGGACACGCCTGTGTCCCCTACCCG
1 ACACGCCCGTGTGGAGGCAATGCACACGCCCGTGTACTTTGGGACACGCCTGTGTCCCCTACCCG
* *
50062587 TGTGGAATTAATTGAATTTATTTTCTATTTCGAACCTGCAGGGGTTTTCACACGGCCAAGCACAC
66 TGTGGAATTAATTGAATTTATTTTCTATTTCGAACCTACAGGGGTTTTCACACAGCCAAGCACAC
50062652 ACCCGTGTCTCTGGCCCGTGTCCTTCACATGGCCTGCCTTA
131 ACCCGTGTCTCTGGCCCGTGTCCTTCACATGGCCTGCCTTA
* *
50062693 ACACGCCCGTGTGGAGGCAATGCACACGCCCGTGTGCTTTGGGACATGCCTGTGTCCCCTACCCG
1 ACACGCCCGTGTGGAGGCAATGCACACGCCCGTGTACTTTGGGACACGCCTGTGTCCCCTACCCG
*
50062758 TGTGGCATTAATTGAATTTATTTTCTATTTCGAACCTACAGGGGTTTTCACACAGCCAAGCACAC
66 TGTGGAATTAATTGAATTTATTTTCTATTTCGAACCTACAGGGGTTTTCACACAGCCAAGCACAC
** *
50062823 TTCCGTGTCTCTGGCCCGTGTCCTTTACATGGCCTGCCTTA
131 ACCCGTGTCTCTGGCCCGTGTCCTTCACATGGCCTGCCTTA
*
50062864 ACACGCCTGTGTGG
1 ACACGCCCGTGTGG
50062878 TCGCCTGTGT
Statistics
Matches: 176, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
171 176 1.00
ACGTcount: A:0.18, C:0.30, G:0.24, T:0.28
Consensus pattern (171 bp):
ACACGCCCGTGTGGAGGCAATGCACACGCCCGTGTACTTTGGGACACGCCTGTGTCCCCTACCCG
TGTGGAATTAATTGAATTTATTTTCTATTTCGAACCTACAGGGGTTTTCACACAGCCAAGCACAC
ACCCGTGTCTCTGGCCCGTGTCCTTCACATGGCCTGCCTTA
Found at i:50067692 original size:40 final size:40
Alignment explanation
Indices: 50067644--50067831 Score: 331
Period size: 40 Copynumber: 4.7 Consensus size: 40
50067634 GCAAACACAT
* * *
50067644 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
50067684 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
50067724 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
50067764 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
50067804 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
50067832 TCCAATGCTC
Statistics
Matches: 141, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 141 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:50074358 original size:40 final size:40
Alignment explanation
Indices: 50074306--50074457 Score: 180
Period size: 40 Copynumber: 3.8 Consensus size: 40
50074296 ATAACCACAA
* * * *
50074306 GCACAATTGCCTTCGGGTTTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTATTAGCCCGGATATAGCAACTC
* * *
50074346 GGACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTATTAGCCCGGATATAGCAACTC
* ** *
50074386 GCACAAATGCCTTCGGGTATTAGCCCGGATAAAATAACTA
1 GCACAAATGCCTTCGGGTATTAGCCCGGATATAGCAACTC
*
50074426 GCATAAATGCCTTCGGG-ACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTA-TTAGCCCGGATAT
50074458 CATTCAAATG
Statistics
Matches: 97, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
39 1 0.01
40 96 0.99
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTATTAGCCCGGATATAGCAACTC
Found at i:50074390 original size:80 final size:80
Alignment explanation
Indices: 50074306--50074457 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
50074296 ATAACCACAA
* * * * * * * *
50074306 GCACAATTGCCTTCGGGTTTTAACCCGGGTATAGCAACTCGGACAAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTATTAACCCGGATAAAACAACTAGCACAAATGCCTTCGGGACTTAGCC
50074371 CGGATATATCAACTC
66 CGGATATATCAACTC
* * *
50074386 GCACAAATGCCTTCGGGTATTAGCCCGGATAAAATAACTAGCATAAATGCCTTCGGGACTTAGCC
1 GCACAAATGCCTTCGGGTATTAACCCGGATAAAACAACTAGCACAAATGCCTTCGGGACTTAGCC
50074451 CGGATAT
66 CGGATAT
50074458 CATTCAAATG
Statistics
Matches: 61, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
80 61 1.00
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTATTAACCCGGATAAAACAACTAGCACAAATGCCTTCGGGACTTAGCC
CGGATATATCAACTC
Found at i:50082478 original size:46 final size:44
Alignment explanation
Indices: 50082373--50082490 Score: 148
Period size: 46 Copynumber: 2.6 Consensus size: 44
50082363 GGGGTAAGGT
50082373 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATTTCATG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGACACATTTCATG
* * * *
50082419 GCTGATGCATGTCCTAGACATGTCTTACACTGGCTTACATCTTGA-G
1 GCCGATGCATGTCCCAGACATGTCTTACACTGAC--ACAT-TTCATG
50082465 GCCGATGCATGTCCCAGACATGTCTT
1 GCCGATGCATGTCCCAGACATGTCTT
50082491 GTACTAGCGC
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
44 12 0.19
45 13 0.21
46 35 0.56
47 3 0.05
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (44 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGACACATTTCATG
Found at i:50082591 original size:94 final size:92
Alignment explanation
Indices: 50082422--50082592 Score: 218
Period size: 94 Copynumber: 1.8 Consensus size: 92
50082412 TTTCATGGCT
* **
50082422 GATGCATGTCCTAGACATGTCTTACACTGGCTTACATCTTGAGGCCGATGCATGTCCCAGACATG
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATAATGAGGCCGATGCATGTCCCAGACATG
***
50082487 TCTTGTACTAGCGCTCGTCACAATACC
66 TCTAACACTAGCGCTCGTCACAATACC
* * * *
50082514 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAATGTGGCCGATGCATTTCCTATAC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACATAATGAGGCCGATGCATGTCCCAGAC
50082578 ATGTCTAACACTAGC
63 ATGTCTAACACTAGC
50082593 TCACACAACT
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
92 4 0.06
93 13 0.20
94 48 0.73
95 1 0.02
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTACATAATGAGGCCGATGCATGTCCCAGACATG
TCTAACACTAGCGCTCGTCACAATACC
Found at i:50098418 original size:27 final size:27
Alignment explanation
Indices: 50098357--50098486 Score: 127
Period size: 27 Copynumber: 4.8 Consensus size: 27
50098347 CATCACACAG
* *
50098357 GGGCAAAACT-GTCATCTTAGCATATAA
1 GGGCAAAA-TAGTCATTTTACCATATAA
* * * *
50098384 GAGAAAAATATTCATTTTACCATATAT
1 GGGCAAAATAGTCATTTTACCATATAA
* *
50098411 GGGCAAAATAGTCAATTTACCGTATAA
1 GGGCAAAATAGTCATTTTACCATATAA
* * *
50098438 GGGCAAAATAGTCATTTTACCACACAG
1 GGGCAAAATAGTCATTTTACCATATAA
* *
50098465 GGGCAATACAGTCATTTTACCA
1 GGGCAAAATAGTCATTTTACCA
50098487 CAAAGAGGTC
Statistics
Matches: 83, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
26 1 0.01
27 82 0.99
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28
Consensus pattern (27 bp):
GGGCAAAATAGTCATTTTACCATATAA
Found at i:50098469 original size:54 final size:54
Alignment explanation
Indices: 50098350--50098486 Score: 143
Period size: 54 Copynumber: 2.5 Consensus size: 54
50098340 AAACATACAT
* *
50098350 CACACAGGGGCAAAACT-GTC-ATCTTAGCATATAAGAGAAAAATATTCATTTTAC
1 CACACAGGGGCAAAA-TAGTCAAT-TTACCATATAAGAGAAAAATAGTCATTTTAC
* * * * * *
50098404 CATATATGGGCAAAATAGTCAATTTACCGTATAAGGGCAAAATAGTCATTTTAC
1 CACACAGGGGCAAAATAGTCAATTTACCATATAAGAGAAAAATAGTCATTTTAC
* * *
50098458 CACACAGGGGCAATACAGTCATTTTACCA
1 CACACAGGGGCAAAATAGTCAATTTACCA
50098487 CAAAGAGGTC
Statistics
Matches: 66, Mismatches: 15, Indels: 4
0.78 0.18 0.05
Matches are distributed among these distances:
53 1 0.02
54 63 0.95
55 2 0.03
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.26
Consensus pattern (54 bp):
CACACAGGGGCAAAATAGTCAATTTACCATATAAGAGAAAAATAGTCATTTTAC
Found at i:50101284 original size:46 final size:46
Alignment explanation
Indices: 50101217--50101338 Score: 151
Period size: 46 Copynumber: 2.7 Consensus size: 46
50101207 TGTGTGCTAG
50101217 TGTAAGACATGTCTGGGACATGCATCGGCCACATT-ATGAGAGCCAA
1 TGTAAGACATGTCTGGGACATGCATCGGCC-CATTGATGAGAGCCAA
* * *
50101263 TGTAAGACATGTCTGGGACATGCATCAG--CATTGAGATGAGAGCTAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCCATT--GATGAGAGCCAA
* *
50101309 TGTAAGACAAGTCTAGGACATGCATCGGCC
1 TGTAAGACATGTCTGGGACATGCATCGGCC
50101339 TCGAAATATG
Statistics
Matches: 65, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.06
46 61 0.94
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGCATCGGCCCATTGATGAGAGCCAA
Found at i:50101462 original size:49 final size:49
Alignment explanation
Indices: 50101215--50101570 Score: 199
Period size: 49 Copynumber: 7.5 Consensus size: 49
50101205 TATGTGTGCT
* * * * *
50101215 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCAC-AT-TATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCC
* * * * * *
50101261 AATGTAAGACATGTCTGGGACAT-GCATC-AGCATTG--AGATGAGAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGA-CCTCGATAGATGAAAGCC
** * * * * * *
50101307 AGTGTAAGACAAGTCTAGGACAT-GCATCGGCCTCGAAATATGCAAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCC
** * * * * * *
50101355 AGTGTAAGACCCATCTGGGATATGGCGTC-AGCTTGAT-G-TG--TGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCC
* * *
50101399 AGTATAAGACCTGTCTGGGACATGGCATCGACAC-CGGTAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATAGATGAAAGCC
* * * *
50101448 AGTGTAAGACCTGTCTAGGACACGGCATC-AGCCTCGATATATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGA-CCTCGATAGATGAAAGCC
* * * *
50101497 AGTGTAAGACCTGTCTGGGACATGGCATCGACTTTGAT-G-TGCTAA-CT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATG-AAAGCC
50101544 AGTGTAAGACCATGTCTGGGACATGGC
1 AGTGTAAGACC-TGTCTGGGACATGGC
50101571 GTCGGCATTT
Statistics
Matches: 237, Mismatches: 55, Indels: 34
0.73 0.17 0.10
Matches are distributed among these distances:
44 25 0.11
45 3 0.01
46 68 0.29
47 15 0.06
48 49 0.21
49 76 0.32
50 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCC
Found at i:50101522 original size:142 final size:145
Alignment explanation
Indices: 50101265--50101570 Score: 355
Period size: 142 Copynumber: 2.2 Consensus size: 145
50101255 AGAGCCAATG
** *
50101265 TAAGA-CATGTCTGGGACAT-GCATC-AGCA-TTG-AGATGAGAGCTAGTGTAAGACAAGTCTAG
1 TAAGACCATGTCTGGGACATGGCATCGA-CACCGGTAGATGAGAGCCAGTGTAAGACAAGTCTAG
* * * * *
50101325 GACATGCATCGGCCTCGAAATATGCAAGCTAGTGTAAGACCCATCTGGGATATGGCGTC-AGC-T
65 GACAGGCATCAGCCTCGAAATATGAAAGCTAGTGTAAGACCCATCTGGGACATGGCATCGA-CTT
**
50101388 TGATGTG-TGTC-AGTA
129 TGATGTGCTAACTAGTA
**
50101403 TAAGACC-TGTCTGGGACATGGCATCGACACCGGTAGATGAGAGCCAGTGTAAGACCTGTCTAGG
1 TAAGACCATGTCTGGGACATGGCATCGACACCGGTAGATGAGAGCCAGTGTAAGACAAGTCTAGG
* **
50101467 ACACGGCATCAGCCTCGATATATGAAAG-TCAGTGTAAGACCTGTCTGGGACATGGCATCGACTT
66 ACA-GGCATCAGCCTCGAAATATGAAAGCT-AGTGTAAGACCCATCTGGGACATGGCATCGACTT
*
50101531 TGATGTGCTAACTAGTG
129 TGATGTGCTAACTAGTA
50101548 TAAGACCATGTCTGGGACATGGC
1 TAAGACCATGTCTGGGACATGGC
50101571 GTCGGCATTT
Statistics
Matches: 140, Mismatches: 16, Indels: 16
0.81 0.09 0.09
Matches are distributed among these distances:
138 17 0.12
139 8 0.06
140 2 0.01
141 31 0.22
142 46 0.33
143 9 0.06
144 2 0.01
145 10 0.07
146 15 0.11
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (145 bp):
TAAGACCATGTCTGGGACATGGCATCGACACCGGTAGATGAGAGCCAGTGTAAGACAAGTCTAGG
ACAGGCATCAGCCTCGAAATATGAAAGCTAGTGTAAGACCCATCTGGGACATGGCATCGACTTTG
ATGTGCTAACTAGTA
Found at i:50102991 original size:42 final size:42
Alignment explanation
Indices: 50102913--50102994 Score: 110
Period size: 42 Copynumber: 2.0 Consensus size: 42
50102903 TGGTTATGTG
* * * *
50102913 TGATTTTGTGTAAGACCATATCTAGTATATGGCATCGATATT
1 TGATTTTGTGTAAGACCATATCTAGGACACGACATCGATATT
* *
50102955 TGATTTTGTGTAAGACCATGTCTGGGACACGACATCGATA
1 TGATTTTGTGTAAGACCATATCTAGGACACGACATCGATA
50102995 CGAGATATCG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.35
Consensus pattern (42 bp):
TGATTTTGTGTAAGACCATATCTAGGACACGACATCGATATT
Found at i:50112069 original size:42 final size:42
Alignment explanation
Indices: 50111990--50112069 Score: 97
Period size: 42 Copynumber: 1.9 Consensus size: 42
50111980 GTTATGTGTG
* * ** *
50111990 ATTTCGTGTAAGACCATATCTGGGATATGGCATCGATATTTA
1 ATTTCGTGTAAGACCATATCTAGGACATAACACCGATATTTA
* *
50112032 ATTTCGTGTAAGTCCATGTCTAGGACATAACACCGATA
1 ATTTCGTGTAAGACCATATCTAGGACATAACACCGATA
50112070 CAAGATATTG
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 31 1.00
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (42 bp):
ATTTCGTGTAAGACCATATCTAGGACATAACACCGATATTTA
Done.