Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 158 of 316
Found at i:50132526 original size:16 final size:17
Alignment explanation
Indices: 50132505--50132537 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
50132495 TAAAAAAAAA
*
50132505 TTAAATTATTTT-AAAT
1 TTAAATAATTTTGAAAT
50132521 TTAAATAATTTTGAAAT
1 TTAAATAATTTTGAAAT
50132538 CCAAATTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (17 bp):
TTAAATAATTTTGAAAT
Found at i:50133172 original size:32 final size:33
Alignment explanation
Indices: 50133103--50133172 Score: 133
Period size: 33 Copynumber: 2.2 Consensus size: 33
50133093 CATATCACAT
50133103 AAAATAAAATAAATATGACTCAATCAATTTTAA
1 AAAATAAAATAAATATGACTCAATCAATTTTAA
50133136 AAAATAAAATAAATATGACTCAATCAA-TTTAA
1 AAAATAAAATAAATATGACTCAATCAATTTTAA
50133168 AAAAT
1 AAAAT
50133173 TAATACAGTT
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 10 0.27
33 27 0.73
ACGTcount: A:0.60, C:0.09, G:0.03, T:0.29
Consensus pattern (33 bp):
AAAATAAAATAAATATGACTCAATCAATTTTAA
Found at i:50136147 original size:21 final size:21
Alignment explanation
Indices: 50136114--50136153 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
50136104 TACTAACATG
50136114 TATATATACTATATATTTTAT
1 TATATATACTATATATTTTAT
*
50136135 TATAT-TACGTATATGTTTT
1 TATATATAC-TATATATTTT
50136154 TATATACGCC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 3 0.18
21 14 0.82
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.57
Consensus pattern (21 bp):
TATATATACTATATATTTTAT
Found at i:50136159 original size:21 final size:18
Alignment explanation
Indices: 50136114--50136160 Score: 51
Period size: 21 Copynumber: 2.5 Consensus size: 18
50136104 TACTAACATG
50136114 TATATATACTATATATTT
1 TATATATACTATATATTT
*
50136132 TATTATATTACGTATATGTTT
1 TA-TATA-TAC-TATATATTT
50136153 T-TATATAC
1 TATATATAC
50136161 GCCATGCATA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
18 5 0.20
19 8 0.32
20 3 0.12
21 9 0.36
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.55
Consensus pattern (18 bp):
TATATATACTATATATTT
Found at i:50142339 original size:40 final size:40
Alignment explanation
Indices: 50142284--50142546 Score: 320
Period size: 40 Copynumber: 6.5 Consensus size: 40
50142274 TATTCGGATG
50142284 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTG-CT
*
50142324 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC---TAGTTGCT
* *
50142367 ACACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTG-CT
50142407 ATATCCGGG-TGAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCT-AAGTCCCGAAGGCATTTGTGC---TAGTTGCT
* *
50142450 ATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTG-CT
* * *
50142490 ATATTCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGCT
*
50142530 ATATCC-GGCTAAATCCC
1 ATATCCGGGCTAAGTCCC
50142547 AAAGATACTT
Statistics
Matches: 194, Mismatches: 16, Indels: 27
0.82 0.07 0.11
Matches are distributed among these distances:
39 14 0.07
40 106 0.55
41 2 0.01
43 67 0.35
44 5 0.03
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGCT
Found at i:50142427 original size:83 final size:83
Alignment explanation
Indices: 50142288--50142525 Score: 415
Period size: 83 Copynumber: 2.9 Consensus size: 83
50142278 CGGATGATAT
*
50142288 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCGAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGTGAAGTCCCGAAGGCATTTG
50142353 TGCGAGTAGTTGCTACAC
66 TGCGAGTAGTTGCTACAC
50142371 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGTGAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGTGAAGTCCCGAAGGCATTTG
*
50142436 TGCGAGTAGTTGCTATAC
66 TGCGAGTAGTTGCTACAC
* * *
50142454 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACTATATTCGGGCT-AAGACCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGG-TGAAGTCCCGAAGGCATTT
50142518 GTGCGAGT
65 GTGCGAGT
50142526 TGCTATATCC
Statistics
Matches: 149, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
83 148 0.99
84 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.30, T:0.25
Consensus pattern (83 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGTGAAGTCCCGAAGGCATTTG
TGCGAGTAGTTGCTACAC
Found at i:50142503 original size:123 final size:121
Alignment explanation
Indices: 50142284--50142546 Score: 322
Period size: 123 Copynumber: 2.1 Consensus size: 121
50142274 TATTCGGATG
*
50142284 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCGAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATACCCGGGCGAAGTCCCGAAGGCA
* * *
50142349 TTTGTGCGAGTAGTTGCTACACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
66 TTTATGC--GTAGTTGCTACACCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
*
50142407 ATATCCGGG-TGAAGTCCCGAAGGCATTTGTGCGAGTAGTTG-CTATACCCGGGCTAAGTCCCGA
1 ATATCCGGGCT-AAGTCCCGAAGGCATTTGTGC---TAG-TGACTATACCCGGGCGAAGTCCCGA
* **
50142470 AGGCATTTATGC-TAG-TGACTATATTCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
61 AGGCATTTATGCGTAGTTG-CTACACCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
*
50142530 ATATCC-GGCTAAATCCC
1 ATATCCGGGCTAAGTCCC
50142547 AAAGATACTT
Statistics
Matches: 123, Mismatches: 9, Indels: 17
0.83 0.06 0.11
Matches are distributed among these distances:
122 11 0.09
123 74 0.60
124 2 0.02
126 34 0.28
127 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (121 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATACCCGGGCGAAGTCCCGAAGGCA
TTTATGCGTAGTTGCTACACCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
Found at i:50145049 original size:48 final size:48
Alignment explanation
Indices: 50144978--50145211 Score: 330
Period size: 48 Copynumber: 4.9 Consensus size: 48
50144968 CGTGACACCG
* *
50144978 TGATAAATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGA
1 TGATATATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGA
*
50145026 TGATATATGTGCCAGTGTAAGACCATCTCTGGGACATGGCATCGGCGA
1 TGATATATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGA
* *
50145074 TGATATATGTGCCTGTGTAAGACCATGTCTAGGACATGGCATCGGCGA
1 TGATATATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGA
* * *
50145122 TGATATGTGTGCCAGTGTAAAACCATGTTTGGGACATGGCATCGGCGA
1 TGATATATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGA
* *
50145170 TGAT-T-TGTGGATTCA-TGTAAGACCATGTCAGGGACATGGCAT
1 TGATATATGT-G--CCAGTGTAAGACCATGTCTGGGACATGGCAT
50145212 TGGTACTTTA
Statistics
Matches: 168, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
46 3 0.02
47 2 0.01
48 161 0.96
49 2 0.01
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (48 bp):
TGATATATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGA
Found at i:50152018 original size:15 final size:15
Alignment explanation
Indices: 50151998--50152036 Score: 78
Period size: 15 Copynumber: 2.6 Consensus size: 15
50151988 CACACAAGTG
50151998 GCCACACGGGTGTGT
1 GCCACACGGGTGTGT
50152013 GCCACACGGGTGTGT
1 GCCACACGGGTGTGT
50152028 GCCACACGG
1 GCCACACGG
50152037 TCGGTTCACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15
Consensus pattern (15 bp):
GCCACACGGGTGTGT
Found at i:50152429 original size:20 final size:22
Alignment explanation
Indices: 50152386--50152431 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
50152376 GTCCCTAGGT
* *
50152386 CACACAGGTGTGTGCCTCCTTC
1 CACACAGGCGTATGCCTCCTTC
50152408 CACACAGGCGTATGCC-CC-TC
1 CACACAGGCGTATGCCTCCTTC
50152428 CACA
1 CACA
50152432 TGGGCGTGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 6 0.27
21 2 0.09
22 14 0.64
ACGTcount: A:0.20, C:0.41, G:0.20, T:0.20
Consensus pattern (22 bp):
CACACAGGCGTATGCCTCCTTC
Found at i:50161995 original size:43 final size:43
Alignment explanation
Indices: 50161967--50162081 Score: 126
Period size: 43 Copynumber: 2.7 Consensus size: 43
50161957 TATCTCATAT
* *
50161967 CGATGGCAATGTCCTAGACATGCTCTTACACGAAATCATATAA
1 CGATGCCAATGTCCTAAACATGCTCTTACACGAAATCATATAA
* * *
50162010 CGATGCCAATGTCCTAAACATGGTCTTACACGTAATCACA-ATA
1 CGATGCCAATGTCCTAAACATGCTCTTACACGAAATCATATA-A
* * *
50162053 CAATTCCAATGTCCTAGACAT-CATCTTAC
1 CGATGCCAATGTCCTAAACATGC-TCTTAC
50162082 TGTAATCACA
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
42 1 0.02
43 60 0.98
ACGTcount: A:0.34, C:0.26, G:0.13, T:0.27
Consensus pattern (43 bp):
CGATGCCAATGTCCTAAACATGCTCTTACACGAAATCATATAA
Found at i:50165207 original size:48 final size:48
Alignment explanation
Indices: 50165155--50165338 Score: 251
Period size: 48 Copynumber: 3.8 Consensus size: 48
50165145 ATGTCAATGT
* * *
50165155 CGATGCCATGTCCCAGACATGGTCTTAGACTAGCACACATATCAACAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACAC
* * *
50165203 CGATGCCATGTCCCACACATGGTCGTACACTGGCTCACATATCAACAT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACAC
* * * * *
50165251 CGATTCCATGTCCTAGACATCGACTTACACTGGCTCACATATCAACGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACAC
* *
50165299 TGATGGCATGTCCCAGACATGGTCTTACACTGGCTCACAT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT
50165339 TAACCACGGT
Statistics
Matches: 116, Mismatches: 20, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 116 1.00
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACAC
Found at i:50166883 original size:26 final size:26
Alignment explanation
Indices: 50166854--50166913 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
50166844 TCCCTTTGAA
* * *
50166854 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
50166880 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
*
50166908 CCATTC
1 TCATTC
50166914 TCAATATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:50166899 original size:28 final size:28
Alignment explanation
Indices: 50166868--50166939 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
50166858 TCGATATTTT
*
50166868 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
50166896 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
50166924 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
50166940 ATTTGATTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:50170069 original size:141 final size:141
Alignment explanation
Indices: 50169815--50170122 Score: 474
Period size: 141 Copynumber: 2.2 Consensus size: 141
50169805 TTTCACACGC
* * *
50169815 AATTTCTTTATGAAATTTTCACAAAAGAATGAAAACATATCATAGGCCTTATAATAATCATAAAA
1 AATTTCTTCACGAAATTTTCACACAAGAATGAAAACATATCATAGGCCTTATAATAATCATAAAA
* * * * *
50169880 TAATTATTTCTATTTCAAATTTGTGGTCTCGAAACCACTGTTCTGACTAGGCCCTAATTCGGGAT
66 TAATTATTTATATTTCAAACTTATGGTCTCAAAACCACTATTCTGACTAGGCCCTAATTCGGGAT
*
50169945 GTTACAGGTAA
131 GTTACAAGTAA
* *
50169956 AATTTCTTCACGAAATTTTCACACAAGCAT-ACAAACATATCTTAGGCCTTATAATAATCATAAA
1 AATTTCTTCACGAAATTTTCACACAAGAATGA-AAACATATCATAGGCCTTATAATAATCATAAA
*
50170020 CTAATTATTTATATTTCAAACTTATGGTCTCAAAACCACTATTCTGACTAGGCCCTAATTCGGGA
65 ATAATTATTTATATTTCAAACTTATGGTCTCAAAACCACTATTCTGACTAGGCCCTAATTCGGGA
*
50170085 TGTTATAAGTAA
130 TGTTACAAGTAA
*
50170097 AATTTCTTCACGAAATTTTTACACAA
1 AATTTCTTCACGAAATTTTCACACAA
50170123 CCCTAATATC
Statistics
Matches: 152, Mismatches: 14, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
140 1 0.01
141 151 0.99
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.35
Consensus pattern (141 bp):
AATTTCTTCACGAAATTTTCACACAAGAATGAAAACATATCATAGGCCTTATAATAATCATAAAA
TAATTATTTATATTTCAAACTTATGGTCTCAAAACCACTATTCTGACTAGGCCCTAATTCGGGAT
GTTACAAGTAA
Found at i:50173896 original size:21 final size:22
Alignment explanation
Indices: 50173872--50173919 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 22
50173862 AAAAAACAAG
* *
50173872 AAAATAA-CAATAAAATAGTAA
1 AAAATAAGCAAGAAAACAGTAA
50173893 AAAA-AAGCAAGAAAACAGTAA
1 AAAATAAGCAAGAAAACAGTAA
50173914 AAAATA
1 AAAATA
50173920 GTTTTTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 2 0.09
21 20 0.87
22 1 0.04
ACGTcount: A:0.73, C:0.06, G:0.08, T:0.12
Consensus pattern (22 bp):
AAAATAAGCAAGAAAACAGTAA
Found at i:50174033 original size:31 final size:30
Alignment explanation
Indices: 50173998--50174056 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 30
50173988 TTTCTAAATG
* **
50173998 AGACTTATTTTTTTGTCCAAATCTATTTTTC
1 AGACTTATATTTTTACCCAAATC-ATTTTTC
50174029 AGACTTATATTTTTACCCAAATCATTTT
1 AGACTTATATTTTTACCCAAATCATTTT
50174057 ACTTTTCGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 5 0.20
31 20 0.80
ACGTcount: A:0.27, C:0.17, G:0.05, T:0.51
Consensus pattern (30 bp):
AGACTTATATTTTTACCCAAATCATTTTTC
Found at i:50181087 original size:20 final size:20
Alignment explanation
Indices: 50181062--50181099 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
50181052 ACAATGAAGG
50181062 AATAAAATATACTA-AAATGA
1 AATAAAATA-ACTACAAATGA
50181082 AATAAAATAACTACAAAT
1 AATAAAATAACTACAAAT
50181100 AAACTCTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.66, C:0.08, G:0.03, T:0.24
Consensus pattern (20 bp):
AATAAAATAACTACAAATGA
Found at i:50194159 original size:40 final size:40
Alignment explanation
Indices: 50194101--50194324 Score: 272
Period size: 40 Copynumber: 5.5 Consensus size: 40
50194091 TATTCGGATG
*
50194101 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCAAGTTACT
*
50194141 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGC-A--AGTTACT
* * * *
50194184 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCAAGTTACT
* ** * *
50194224 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCAAGTTACT
* * *
50194264 ATATCCGGGCTAAGA-CCCGAAGGCATTTGTACGAGTTGCT
1 ATATCCGGGCTAA-ATCCCGAAGGCATTTGTGCAAGTTACT
50194304 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAATCCCGAAG
50194325 ATACTTGGGT
Statistics
Matches: 162, Mismatches: 17, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
38 1 0.01
39 13 0.08
40 111 0.69
41 1 0.01
43 36 0.22
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAATCCCGAAGGCATTTGTGCAAGTTACT
Found at i:50194244 original size:83 final size:80
Alignment explanation
Indices: 50194105--50194324 Score: 293
Period size: 83 Copynumber: 2.7 Consensus size: 80
50194095 CGGATGATAT
* **
50194105 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAATCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAATCCCGAAGGCATTCA
50194170 TGCGAGTAGTTG-CTATAC
66 TGC---TAG-TGACTATAC
* *
50194188 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAATCCCGAAGGCATTCA
*
50194253 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * *
50194268 CCGGGCTAAGACCCGAAGGCATTTGTACGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAATCCCGAAG
50194325 ATACTTGGGT
Statistics
Matches: 125, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
79 16 0.13
80 44 0.35
81 2 0.02
83 63 0.50
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAATCCCGAAGGCATTCA
TGCTAGTGACTATAC
Found at i:50202329 original size:40 final size:40
Alignment explanation
Indices: 50202274--50202497 Score: 306
Period size: 40 Copynumber: 5.5 Consensus size: 40
50202264 TATTCGGATG
50202274 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
50202314 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
50202357 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
50202397 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
50202437 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
50202477 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
50202498 ATACTTGGGT
Statistics
Matches: 165, Mismatches: 16, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
39 13 0.08
40 114 0.69
41 1 0.01
43 37 0.22
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:50202417 original size:83 final size:80
Alignment explanation
Indices: 50202278--50202497 Score: 302
Period size: 83 Copynumber: 2.7 Consensus size: 80
50202268 CGGATGATAT
* **
50202278 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
50202343 TGCGAGTAGTTG-CTATAC
66 TGC---TAG-TGACTATAC
*
50202361 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
*
50202426 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * *
50202441 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
50202498 ATACTTGGGT
Statistics
Matches: 127, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
79 16 0.13
80 45 0.35
81 2 0.02
83 64 0.50
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
TGCTAGTGACTATAC
Found at i:50210543 original size:40 final size:40
Alignment explanation
Indices: 50210488--50210711 Score: 306
Period size: 40 Copynumber: 5.5 Consensus size: 40
50210478 TATTCGGATG
50210488 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
50210528 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
50210571 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
50210611 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
50210651 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
50210691 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
50210712 ATACTTGGGT
Statistics
Matches: 165, Mismatches: 16, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
39 13 0.08
40 114 0.69
41 1 0.01
43 37 0.22
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:50210631 original size:83 final size:80
Alignment explanation
Indices: 50210492--50210711 Score: 302
Period size: 83 Copynumber: 2.7 Consensus size: 80
50210482 CGGATGATAT
* **
50210492 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
50210557 TGCGAGTAGTTG-CTATAC
66 TGC---TAG-TGACTATAC
*
50210575 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
*
50210640 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * *
50210655 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
50210712 ATACTTGGGT
Statistics
Matches: 127, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
79 16 0.13
80 45 0.35
81 2 0.02
83 64 0.50
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
TGCTAGTGACTATAC
Found at i:50218735 original size:40 final size:40
Alignment explanation
Indices: 50218680--50218903 Score: 306
Period size: 40 Copynumber: 5.5 Consensus size: 40
50218670 TATTCGGATG
50218680 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
50218720 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
50218763 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
50218803 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
50218843 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
50218883 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
50218904 ATGCTTGGGT
Statistics
Matches: 165, Mismatches: 16, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
39 13 0.08
40 114 0.69
41 1 0.01
43 37 0.22
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:50218823 original size:83 final size:80
Alignment explanation
Indices: 50218684--50218903 Score: 302
Period size: 83 Copynumber: 2.7 Consensus size: 80
50218674 CGGATGATAT
* **
50218684 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
50218749 TGCGAGTAGTTG-CTATAC
66 TGC---TAG-TGACTATAC
*
50218767 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
*
50218832 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * *
50218847 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
50218904 ATGCTTGGGT
Statistics
Matches: 127, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
79 16 0.13
80 45 0.35
81 2 0.02
83 64 0.50
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
TGCTAGTGACTATAC
Found at i:50221168 original size:17 final size:17
Alignment explanation
Indices: 50221146--50221179 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
50221136 GTAATGATTT
*
50221146 TAAAAATTAAAGTTTGA
1 TAAAAATCAAAGTTTGA
50221163 TAAAAATCAAAGTTTGA
1 TAAAAATCAAAGTTTGA
50221180 AATTATGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.53, C:0.03, G:0.12, T:0.32
Consensus pattern (17 bp):
TAAAAATCAAAGTTTGA
Found at i:50223640 original size:108 final size:108
Alignment explanation
Indices: 50223451--50223668 Score: 418
Period size: 108 Copynumber: 2.0 Consensus size: 108
50223441 TGGGATGAGC
50223451 ATAGGCAGCTTGTTGTTGCTGAAGATGCGGTATGGAACTCATAAATAAATGTAAGAATTATTTCA
1 ATAGGCAGCTTGTTGTTGCTGAAGATGCGGTATGGAACTCATAAATAAATGTAAGAATTATTTCA
50223516 AGTCTTTATTATCTTAATTTGACCAAACTTATATCTAATATGA
66 AGTCTTTATTATCTTAATTTGACCAAACTTATATCTAATATGA
*
50223559 ATAGGCAGCTTGTTGTTGCTGAAGATGCGGTATGGAACTCATATATAAATGTAAGAATTATTTCA
1 ATAGGCAGCTTGTTGTTGCTGAAGATGCGGTATGGAACTCATAAATAAATGTAAGAATTATTTCA
*
50223624 AGTCTTTATTATCTTAATTTGTCCAAACTTATATCTAATATGA
66 AGTCTTTATTATCTTAATTTGACCAAACTTATATCTAATATGA
50223667 AT
1 AT
50223669 TCTTCTTTTT
Statistics
Matches: 108, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
108 108 1.00
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.38
Consensus pattern (108 bp):
ATAGGCAGCTTGTTGTTGCTGAAGATGCGGTATGGAACTCATAAATAAATGTAAGAATTATTTCA
AGTCTTTATTATCTTAATTTGACCAAACTTATATCTAATATGA
Found at i:50224767 original size:57 final size:58
Alignment explanation
Indices: 50224668--50224804 Score: 177
Period size: 58 Copynumber: 2.4 Consensus size: 58
50224658 TTAATTCATA
* * * *
50224668 TAATAATAATTATATTAAGAATTTTATTAAATTATATATTA-TTTTATTAAATTATATT
1 TAATAATAATCATATTAA-AATATGATTAAATTATATATTATTTTTAATAAATTATATT
* * * *
50224726 TAGTAATAATCATGTTAAAATATGATTAAATTATTTATTATTTTTAATAAATTATTTT
1 TAATAATAATCATATTAAAATATGATTAAATTATATATTATTTTTAATAAATTATATT
*
50224784 TAATAATAATCTTATTAAAAT
1 TAATAATAATCATATTAAAAT
50224805 TTAATAATAA
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
57 19 0.28
58 48 0.72
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.51
Consensus pattern (58 bp):
TAATAATAATCATATTAAAATATGATTAAATTATATATTATTTTTAATAAATTATATT
Found at i:50224781 original size:14 final size:14
Alignment explanation
Indices: 50224762--50224789 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
50224752 TAAATTATTT
50224762 ATTATTTTTAATAA
1 ATTATTTTTAATAA
50224776 ATTATTTTTAATAA
1 ATTATTTTTAATAA
50224790 TAATCTTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
ATTATTTTTAATAA
Found at i:50224956 original size:12 final size:12
Alignment explanation
Indices: 50224937--50225003 Score: 75
Period size: 12 Copynumber: 5.6 Consensus size: 12
50224927 TAATAATAAT
50224937 TTTA-TATTAAA
1 TTTATTATTAAA
50224948 TTTATTATTAAA
1 TTTATTATTAAA
* *
50224960 TATTATTAATAAT
1 T-TTATTATTAAA
50224973 TTTA-TATTAAA
1 TTTATTATTAAA
*
50224984 ATTATTATTAAA
1 TTTATTATTAAA
50224996 TATTATTA
1 T-TTATTA
50225004 ATAATTATAT
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
11 12 0.26
12 18 0.39
13 16 0.35
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (12 bp):
TTTATTATTAAA
Found at i:50224965 original size:10 final size:10
Alignment explanation
Indices: 50224950--50225004 Score: 50
Period size: 10 Copynumber: 5.9 Consensus size: 10
50224940 ATATTAAATT
50224950 TATTATTAAA
1 TATTATTAAA
50224960 TATTATT-AA
1 TATTATTAAA
50224969 TAATT-TT--A
1 T-ATTATTAAA
50224977 TATTA--AAA
1 TATTATTAAA
50224985 TTATTATTAAA
1 -TATTATTAAA
50224996 TATTATTAA
1 TATTATTAA
50225005 TAATTATATT
Statistics
Matches: 38, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
7 3 0.08
8 3 0.08
9 10 0.26
10 19 0.50
11 3 0.08
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (10 bp):
TATTATTAAA
Found at i:50224972 original size:36 final size:36
Alignment explanation
Indices: 50224930--50225039 Score: 154
Period size: 36 Copynumber: 3.1 Consensus size: 36
50224920 ATGTTCTTAA
*
50224930 TAATAATTTTATATTAAATTTATTATTAAATATTAT
1 TAATAATTTTATATTAAAATTATTATTAAATATTAT
50224966 TAATAATTTTATATTAAAATTATTATTAAATATTAT
1 TAATAATTTTATATTAAAATTATTATTAAATATTAT
*
50225002 TAATAA--TTATATTAATAA-TGTTATTAAAATATATAT
1 TAATAATTTTATATTAA-AATTATTATT-AAATAT-TAT
50225038 TA
1 TA
50225040 TTTTATTAAA
Statistics
Matches: 69, Mismatches: 2, Indels: 6
0.90 0.03 0.08
Matches are distributed among these distances:
34 15 0.22
35 8 0.12
36 46 0.67
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (36 bp):
TAATAATTTTATATTAAAATTATTATTAAATATTAT
Found at i:50224973 original size:24 final size:25
Alignment explanation
Indices: 50224949--50225039 Score: 84
Period size: 24 Copynumber: 3.8 Consensus size: 25
50224939 TATATTAAAT
*
50224949 TTATTATTAAATATTATTAATAATT
1 TTATTATTAAATATTATTAATAATA
*
50224974 TTA-TATTAAA-ATTATTATTAAATA
1 TTATTATTAAATATTATTAAT-AATA
* * *
50224998 TTATTAATAATTA-TATTAATAATG
1 TTATTATTAAATATTATTAATAATA
50225022 TTATTA--AAATATATATTA
1 TTATTATTAAATAT-TATTA
50225040 TTTTATTAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 11
0.75 0.10 0.15
Matches are distributed among these distances:
22 4 0.07
23 8 0.15
24 27 0.50
25 14 0.26
26 1 0.02
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (25 bp):
TTATTATTAAATATTATTAATAATA
Found at i:50225014 original size:12 final size:11
Alignment explanation
Indices: 50224938--50225039 Score: 66
Period size: 12 Copynumber: 8.7 Consensus size: 11
50224928 AATAATAATT
*
50224938 TTATATTAAAT
1 TTATATTAAAA
50224949 TTATTATTAAATA
1 TTA-TATTAAA-A
* **
50224962 TTATTAATAATT
1 TTA-TATTAAAA
50224974 TTATATTAAAA
1 TTATATTAAAA
50224985 TTATTATT-AAA
1 TTA-TATTAAAA
50224996 -TATTATTAATAA
1 TTA-TATTAA-AA
50225008 TTATATTAATAA
1 TTATATTAA-AA
50225020 TGT-TATTAAAA
1 T-TATATTAAAA
50225031 TATATATTA
1 T-TATATTA
50225040 TTTTATTAAA
Statistics
Matches: 75, Mismatches: 8, Indels: 15
0.77 0.08 0.15
Matches are distributed among these distances:
10 7 0.09
11 19 0.25
12 37 0.49
13 12 0.16
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (11 bp):
TTATATTAAAA
Found at i:50225294 original size:44 final size:46
Alignment explanation
Indices: 50225224--50225313 Score: 121
Period size: 44 Copynumber: 2.0 Consensus size: 46
50225214 ATTACAACAT
50225224 CATTCCATTCAACCAAACACAAGAATT-CT-ATTACAACTCTATTC
1 CATTCCATTCAACCAAACACAAGAATTACTGATTACAACTCTATTC
*** * *
50225268 CATTCCATTCAACCAAACAGTTGAATTATTGATTACAGCTCTATTC
1 CATTCCATTCAACCAAACACAAGAATTACTGATTACAACTCTATTC
50225314 AATTACAACC
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
44 24 0.62
45 1 0.03
46 14 0.36
ACGTcount: A:0.36, C:0.27, G:0.06, T:0.32
Consensus pattern (46 bp):
CATTCCATTCAACCAAACACAAGAATTACTGATTACAACTCTATTC
Found at i:50225320 original size:16 final size:16
Alignment explanation
Indices: 50225299--50225337 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
50225289 TGAATTATTG
*
50225299 ATTACAGCTCTATTCA
1 ATTACAGCCCTATTCA
* *
50225315 ATTACAACCCTATTCT
1 ATTACAGCCCTATTCA
50225331 ATTACAG
1 ATTACAG
50225338 TGAACCAAAC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.33, C:0.26, G:0.05, T:0.36
Consensus pattern (16 bp):
ATTACAGCCCTATTCA
Found at i:50238558 original size:20 final size:21
Alignment explanation
Indices: 50238533--50238572 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
50238523 CACCTACAAC
* *
50238533 AAAAAA-TATCAATACTTTTT
1 AAAAAAGTACCAATAATTTTT
50238553 AAAAAAGTACCAATAATTTT
1 AAAAAAGTACCAATAATTTT
50238573 AGCATTTAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.53, C:0.10, G:0.03, T:0.35
Consensus pattern (21 bp):
AAAAAAGTACCAATAATTTTT
Found at i:50239267 original size:22 final size:22
Alignment explanation
Indices: 50239239--50239281 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
50239229 TAAGTGTATA
50239239 ACTTTAATACTTTGTAAACTAC
1 ACTTTAATACTTTGTAAACTAC
50239261 ACTTTAATACTTTGTAAACTA
1 ACTTTAATACTTTGTAAACTA
50239282 ATATTTATGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.37, C:0.16, G:0.05, T:0.42
Consensus pattern (22 bp):
ACTTTAATACTTTGTAAACTAC
Found at i:50244623 original size:30 final size:29
Alignment explanation
Indices: 50244584--50244650 Score: 116
Period size: 30 Copynumber: 2.3 Consensus size: 29
50244574 TTTAGCAAAA
50244584 AAACTCTCAAATTTCTCCCTAAATTTCTC
1 AAACTCTCAAATTTCTCCCTAAATTTCTC
*
50244613 AAAGCTCTCAAATTTCTCCTTAAATTTCTC
1 AAA-CTCTCAAATTTCTCCCTAAATTTCTC
50244643 AAACTCTC
1 AAACTCTC
50244651 TTTAATTAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
29 8 0.22
30 28 0.78
ACGTcount: A:0.31, C:0.30, G:0.01, T:0.37
Consensus pattern (29 bp):
AAACTCTCAAATTTCTCCCTAAATTTCTC
Found at i:50246706 original size:21 final size:21
Alignment explanation
Indices: 50246680--50246720 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
50246670 CCCACAATCA
50246680 GAGCAACCACAACACCCGCTG
1 GAGCAACCACAACACCCGCTG
* *
50246701 GAGCAAGCACAACTCCCGCT
1 GAGCAACCACAACACCCGCT
50246721 AGAAGCTGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.32, C:0.41, G:0.20, T:0.07
Consensus pattern (21 bp):
GAGCAACCACAACACCCGCTG
Found at i:50253144 original size:10 final size:11
Alignment explanation
Indices: 50253125--50253154 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
50253115 TTTTCCTAAG
50253125 ATGTGAATTGA
1 ATGTGAATTGA
50253136 ATG-GAATTGA
1 ATGTGAATTGA
50253146 ATGTGAATT
1 ATGTGAATT
50253155 TTATTAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.37, C:0.00, G:0.27, T:0.37
Consensus pattern (11 bp):
ATGTGAATTGA
Found at i:50256857 original size:37 final size:37
Alignment explanation
Indices: 50256807--50256882 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
50256797 ATGATCAATG
*
50256807 TTGTTGTGATTAGCCAAATG-TAT-TGGCTTATAATGAT
1 TTGTTGTGATTAGCC--ATGAGATGTGGCTTATAATGAT
50256844 TTGTTGT-ATTTAGCCATGAGATGTGGCTTATAATGAT
1 TTGTTGTGA-TTAGCCATGAGATGTGGCTTATAATGAT
50256881 TT
1 TT
50256883 TGGCTTGTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
35 3 0.09
36 3 0.09
37 29 0.83
ACGTcount: A:0.25, C:0.08, G:0.22, T:0.45
Consensus pattern (37 bp):
TTGTTGTGATTAGCCATGAGATGTGGCTTATAATGAT
Found at i:50258833 original size:15 final size:15
Alignment explanation
Indices: 50258788--50258850 Score: 72
Period size: 15 Copynumber: 4.2 Consensus size: 15
50258778 TATGATATGG
*
50258788 TATCTTGGATTTCTG
1 TATCTTGGATTTCTT
* *
50258803 TACCTTGGATATCTT
1 TATCTTGGATTTCTT
*
50258818 TATCTTGGATTCCTT
1 TATCTTGGATTTCTT
* *
50258833 TGTCATGGATTTCTT
1 TATCTTGGATTTCTT
50258848 TAT
1 TAT
50258851 TCTGGTTTTC
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 38 1.00
ACGTcount: A:0.16, C:0.16, G:0.16, T:0.52
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:50262474 original size:17 final size:17
Alignment explanation
Indices: 50262452--50262487 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
50262442 TGTATCATGA
50262452 GATATTTGAATTCTTGT
1 GATATTTGAATTCTTGT
50262469 GATATTTGAATTCTTGT
1 GATATTTGAATTCTTGT
50262486 GA
1 GA
50262488 GACAGAGTCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.25, C:0.06, G:0.19, T:0.50
Consensus pattern (17 bp):
GATATTTGAATTCTTGT
Found at i:50263192 original size:37 final size:37
Alignment explanation
Indices: 50263141--50263216 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
50263131 ATGATCGATG
*
50263141 TTGTTGTGATTAGCCAAATG-TAT-TGGCTTATAATGAT
1 TTGTTGTGATTAGCC--ATGAGATGTGGCTTATAATGAT
50263178 TTGTTGT-ATGTAGCCATGAGATGTGGCTTATAATGAT
1 TTGTTGTGAT-TAGCCATGAGATGTGGCTTATAATGAT
50263215 TT
1 TT
50263217 TGGCTTGTGA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
35 3 0.09
36 4 0.11
37 28 0.80
ACGTcount: A:0.25, C:0.08, G:0.24, T:0.43
Consensus pattern (37 bp):
TTGTTGTGATTAGCCATGAGATGTGGCTTATAATGAT
Found at i:50275450 original size:25 final size:26
Alignment explanation
Indices: 50275422--50275471 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
50275412 AATTCATGCA
*
50275422 TAGATTAAAGC-ATTTAAAATACGTT
1 TAGAGTAAAGCTATTTAAAATACGTT
*
50275447 TAGAGTAAAGCTTATTTAACATACG
1 TAGAGTAAAGC-TATTTAAAATACG
50275472 GATTTACCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 10 0.48
27 11 0.52
ACGTcount: A:0.42, C:0.10, G:0.14, T:0.34
Consensus pattern (26 bp):
TAGAGTAAAGCTATTTAAAATACGTT
Found at i:50279619 original size:17 final size:17
Alignment explanation
Indices: 50279597--50279641 Score: 72
Period size: 17 Copynumber: 2.6 Consensus size: 17
50279587 GATTGATTTT
50279597 TGATATGCATGTTTAAA
1 TGATATGCATGTTTAAA
50279614 TGATATGCATGTTTAAA
1 TGATATGCATGTTTAAA
* *
50279631 TAACATGCATG
1 TGATATGCATG
50279642 CAAGTTATGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.38
Consensus pattern (17 bp):
TGATATGCATGTTTAAA
Found at i:50281594 original size:45 final size:45
Alignment explanation
Indices: 50281530--50281889 Score: 512
Period size: 45 Copynumber: 8.1 Consensus size: 45
50281520 AAAGAACTGA
50281530 TGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGG
1 TGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGG
*
50281575 TGAAATGTTATTCGCGCCTTTGAGCCTAGCAGGCTATAATGCCGG
1 TGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGG
* *
50281620 TGAAATGTTATTCTGGCCTTTGAGCCTAGCAGGCTATAATGCTGG
1 TGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGG
50281665 TGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGG
1 TGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGG
* *
50281710 TGAGATATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGG
1 TGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGG
* * * *
50281755 TGAGATATTATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCAG
1 TGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGG
* ** * *
50281800 TGAGATACTATTCGGG-CTTTCGAGCCTAACAGGCTATAATGTCGG
1 TGAAATGTTATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGG
* * * * *
50281845 TGGAATGATA-TCGGGCC-TCGAGCCTAGCAGGCGA-AATGCCAG
1 TGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGG
50281887 TGA
1 TGA
50281890 TTTGAGAAAA
Statistics
Matches: 288, Mismatches: 25, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
42 8 0.03
43 13 0.05
44 10 0.03
45 257 0.89
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (45 bp):
TGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGG
Found at i:50283561 original size:46 final size:46
Alignment explanation
Indices: 50283505--50283821 Score: 225
Period size: 46 Copynumber: 6.7 Consensus size: 46
50283495 TCACTTGTGT
* * * *
50283505 GAGCTAGTGTAAGACATGCCTGGGACATTCATCGGCCACAATATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGA
* * *
50283551 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGG-CATCGAGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-CAAGATGA
* * * ** * *
50283599 GTGCTAGTGTAAGACATGTCTGAGACATGCATCGGCTTCGAGACTTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGA-TGA
* **
50283646 G-GCCAGTGTAAGACATGTCTTGGACATGCATCGGCTGCAAGAT--
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGA
* * * *
50283689 GTGTCAGTGTAAGACCATGTCTGGGATATGGCATCGG-CAC-GGTTATTGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACAAG--A-TGA
* * *
50283738 GAGCTAGTGTAAGAACATGTCTGAGACATGGCATTGGCCTTA-AAGATGA
1 GAGCCAGTGTAAG-ACATGTCTGGGACAT-GCATCGGCC--ACAAGATGA
*
50283787 TAGCCAGTGTAAGACCATGTCTGGGACATTGCATC
1 GAGCCAGTGTAAGA-CATGTCTGGGACA-TGCATC
50283822 AGCACCTTAC
Statistics
Matches: 214, Mismatches: 37, Indels: 37
0.74 0.13 0.13
Matches are distributed among these distances:
43 1 0.00
44 12 0.06
45 14 0.07
46 69 0.32
47 29 0.14
48 24 0.11
49 59 0.28
50 4 0.02
52 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGA
Found at i:50289358 original size:23 final size:23
Alignment explanation
Indices: 50289332--50289377 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
50289322 CGAAGTAAGC
50289332 TATATAGCTTAGTAAGCTCGTAT
1 TATATAGCTTAGTAAGCTCGTAT
50289355 TATATAGCTTAGTAAGCTCGTAT
1 TATATAGCTTAGTAAGCTCGTAT
50289378 GAAAGAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.39
Consensus pattern (23 bp):
TATATAGCTTAGTAAGCTCGTAT
Found at i:50294731 original size:53 final size:53
Alignment explanation
Indices: 50294548--50294754 Score: 216
Period size: 53 Copynumber: 3.8 Consensus size: 53
50294538 ATTAGGGTTT
* * * *
50294548 AAGGATACCAAGTAAGACCATGCCAAGACATGGCACTGGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGC
* * * * * * * *
50294602 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACGGTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * * *
50294657 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* * *
50294710 AAGGATACCACGTAAGACCATGTCAAGACATGACAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
50294755 TAAAAAGGAA
Statistics
Matches: 121, Mismatches: 30, Indels: 5
0.78 0.19 0.03
Matches are distributed among these distances:
53 44 0.36
54 38 0.31
55 39 0.32
ACGTcount: A:0.38, C:0.19, G:0.24, T:0.19
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:50300738 original size:27 final size:27
Alignment explanation
Indices: 50300708--50300885 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
50300698 ATATTGATTC
* * * *
50300708 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
50300735 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
50300762 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
50300790 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
50300817 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
50300844 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
50300871 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50300886 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:50300847 original size:82 final size:81
Alignment explanation
Indices: 50300729--50300884 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
50300719 TGCTATATAA
* *
50300729 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
50300794 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
50300811 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
50300875 CACTTAGTGC
65 CACTTAGTGC
50300885 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:50308771 original size:27 final size:27
Alignment explanation
Indices: 50308741--50308918 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
50308731 ATATTGAGTC
* * * *
50308741 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
50308768 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
50308795 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
50308823 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
50308850 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
50308877 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
50308904 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50308919 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:50308880 original size:82 final size:81
Alignment explanation
Indices: 50308762--50308917 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
50308752 TGCTATATAA
* *
50308762 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
50308827 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
50308844 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
50308908 CACTTAGTGC
65 CACTTAGTGC
50308918 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:50323302 original size:108 final size:110
Alignment explanation
Indices: 50323157--50323358 Score: 311
Period size: 108 Copynumber: 1.9 Consensus size: 110
50323147 TATCCTATTG
* * * *
50323157 AAACTTACCATTGACATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTCTG-AA-CTCACCA
1 AAACTTACCAATGACATGTCTTGACATGGTATTACATGATATCCTTGCCTT-AGAAACCTCACCA
50323220 A-TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAA
65 ATTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAA
* * *
50323265 AAACTTATCAATGTCATGTCTTGACATGGTATTACATGATATCCTTGCCTTAGAAACCTTACCAA
1 AAACTTACCAATGACATGTCTTGACATGGTATTACATGATATCCTTGCCTTAGAAACCTCACCAA
50323330 TTGCCATGCCTTGGCATGGTCTTACATGG
66 TTGCCATGCCTTGGCATGGTCTTACATGG
50323359 TACCCTTAAA
Statistics
Matches: 84, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.57
109 7 0.08
110 28 0.33
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.34
Consensus pattern (110 bp):
AAACTTACCAATGACATGTCTTGACATGGTATTACATGATATCCTTGCCTTAGAAACCTCACCAA
TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAA
Found at i:50323313 original size:55 final size:54
Alignment explanation
Indices: 50323111--50323365 Score: 227
Period size: 55 Copynumber: 4.8 Consensus size: 54
50323101 ACACGGGTAC
* * * * * *
50323111 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---AT-TGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAAAA
* * * * *
50323160 CTTACCATTGACATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTCT-GAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAAAA
* * *
50323213 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAAAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-AAAA
* * * * * * *
50323268 CTTATCAATGTCATGTCTTGACATGGTATTACATGATATCCTTGCCTTAGAAAC
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAAAA
* *
50323322 CTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTACCCTT
1 CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
50323366 AAACCCTAAT
Statistics
Matches: 165, Mismatches: 31, Indels: 14
0.79 0.15 0.07
Matches are distributed among these distances:
49 37 0.22
50 1 0.01
52 2 0.01
53 43 0.26
54 11 0.07
55 69 0.42
56 2 0.01
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAAAA
Found at i:50323483 original size:14 final size:14
Alignment explanation
Indices: 50323464--50323491 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
50323454 GAGTCTTCTT
50323464 TGAATAATTTCATA
1 TGAATAATTTCATA
50323478 TGAATAATTTCATA
1 TGAATAATTTCATA
50323492 AAATAAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
Consensus pattern (14 bp):
TGAATAATTTCATA
Found at i:50324995 original size:11 final size:11
Alignment explanation
Indices: 50324979--50325007 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
50324969 CTCATTTTGC
50324979 TATCAACTCGT
1 TATCAACTCGT
50324990 TATCAACTCGT
1 TATCAACTCGT
50325001 TATCAAC
1 TATCAAC
50325008 CTTCTGGGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.34
Consensus pattern (11 bp):
TATCAACTCGT
Found at i:50326423 original size:6 final size:6
Alignment explanation
Indices: 50326393--50326579 Score: 125
Period size: 6 Copynumber: 30.3 Consensus size: 6
50326383 AAGAAACATT
* *
50326393 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAGA ATCAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * * *
50326440 GTGACAGA ATCAAA ATCAAA ATCAGA ATTAGA ATTAGGTA A-CAGA ATCAGA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
* * * *
50326491 ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ACCAGA ATCAGA ATTAGGTA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
*
50326542 A-CAGA ATCAGA ATCAGT ATCAGGTA AT-AGA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA AT
50326580 GTGAATGCAA
Statistics
Matches: 144, Mismatches: 20, Indels: 34
0.73 0.10 0.17
Matches are distributed among these distances:
5 11 0.08
6 112 0.78
7 13 0.09
8 8 0.06
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:50326501 original size:37 final size:37
Alignment explanation
Indices: 50326414--50326535 Score: 124
Period size: 37 Copynumber: 3.3 Consensus size: 37
50326404 AATCAAAATG
*
50326414 AGAATCAGAATCAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGAATCAGGTAACAGAATC
* * * *
50326451 AAAATCAAAATCAGAATTAGAATTAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGAATCAGGTAACAGAATC
* * *
50326488 AGAATCAGTATCAGGTAA-CAGAATCA--AAATCAGAACC
1 AGAATCAGAATCA-G-AATCAGAATCAGGTAA-CAGAATC
50326525 AGAATCAGAAT
1 AGAATCAGAAT
50326536 TAGGTAACAG
Statistics
Matches: 69, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
36 2 0.03
37 58 0.84
38 7 0.10
39 2 0.03
ACGTcount: A:0.50, C:0.15, G:0.17, T:0.18
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAACAGAATC
Found at i:50326501 original size:62 final size:62
Alignment explanation
Indices: 50326419--50326575 Score: 260
Period size: 62 Copynumber: 2.5 Consensus size: 62
50326409 AAATGAGAAT
* * * *
50326419 CAGAATCAGAATCAGAATCAGGTGACAGAATCAAAATCAAAATCAGAATTAGAATTAGGTAA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAAAATCAAAACCAGAATCAGAATTAGGTAA
*
50326481 CAGAATCAGAATCAGTATCAGGTAACAGAATCAAAATCAGAACCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAAAATCAAAACCAGAATCAGAATTAGGTAA
*
50326543 CAGAATCAGAATCAGTATCAGGTAATAGAATCA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCA
50326576 GAATGTGAAT
Statistics
Matches: 89, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 89 1.00
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (62 bp):
CAGAATCAGAATCAGTATCAGGTAACAGAATCAAAATCAAAACCAGAATCAGAATTAGGTAA
Found at i:50326541 original size:37 final size:37
Alignment explanation
Indices: 50326481--50326557 Score: 118
Period size: 37 Copynumber: 2.1 Consensus size: 37
50326471 AATTAGGTAA
* *
50326481 CAGAATCAGAATCAGTATCAGGTAACAGAATCAAAAT
1 CAGAACCAGAATCAGAATCAGGTAACAGAATCAAAAT
* *
50326518 CAGAACCAGAATCAGAATTAGGTAACAGAATCAGAAT
1 CAGAACCAGAATCAGAATCAGGTAACAGAATCAAAAT
50326555 CAG
1 CAG
50326558 TATCAGGTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.48, C:0.17, G:0.18, T:0.17
Consensus pattern (37 bp):
CAGAACCAGAATCAGAATCAGGTAACAGAATCAAAAT
Found at i:50326552 original size:25 final size:25
Alignment explanation
Indices: 50326419--50326579 Score: 104
Period size: 25 Copynumber: 6.5 Consensus size: 25
50326409 AAATGAGAAT
*
50326419 CAGAATCAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGAATCAGGTAA
* *
50326444 CAGAATCAAAATCAAAATCA-G-AA
1 CAGAATCAGAATCAGAATCAGGTAA
* *
50326467 TTAGAATTAGGTAA-CAGAATCA-G-AA
1 -CAGAATCA-G-AATCAGAATCAGGTAA
* *
50326492 TCAGTATCAGGTAA-CAGAATCA--AAA
1 -CAGAATCA-G-AATCAGAATCAGGTAA
* *
50326517 TCAGAACCAGAATCAGAATTAGGTAA
1 -CAGAATCAGAATCAGAATCAGGTAA
*
50326543 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
*
50326568 TAGAATCAGAAT
1 CAGAATCAGAAT
50326580 GTGAATGCAA
Statistics
Matches: 111, Mismatches: 18, Indels: 14
0.78 0.13 0.10
Matches are distributed among these distances:
23 3 0.03
24 15 0.14
25 89 0.80
26 4 0.04
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:50326745 original size:27 final size:26
Alignment explanation
Indices: 50326697--50326756 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
50326687 GCGAGGCTGC
*
50326697 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
50326724 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
50326750 CAGATAT
1 CAGATAT
50326757 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:50326801 original size:71 final size:67
Alignment explanation
Indices: 50326725--50326861 Score: 193
Period size: 67 Copynumber: 2.0 Consensus size: 67
50326715 CACCAGATAC
* * *
50326725 AGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCGAAGCCACCAGATTGTAGCGAG
1 AGATATTGTGACGAAGCCACCAGAACAG----ATATATGTGGCGAAGCCACCAGATTGTAGCGAG
50326790 GCTGCT
62 GCTGCT
* *
50326796 AGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGACGCCACCAGATTGTAGCGAGGCTG
1 AGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGTAGCGAGGCTG
50326861 C
66 C
50326862 CAGAACGCTT
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
67 37 0.61
71 24 0.39
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.21
Consensus pattern (67 bp):
AGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGTAGCGAGGCTG
CT
Found at i:50326843 original size:27 final size:26
Alignment explanation
Indices: 50326796--50326846 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
50326786 CGAGGCTGCT
*
50326796 AGATATTGTGACGAAGTCACCAGAAC
1 AGATATTGTGACGAAGCCACCAGAAC
* *
50326822 AGATATATGTGGCGACGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
50326847 TTGTAGCGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.18
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAC
Found at i:50327112 original size:27 final size:26
Alignment explanation
Indices: 50327048--50327113 Score: 69
Period size: 27 Copynumber: 2.5 Consensus size: 26
50327038 CAGTCACTTG
* *
50327048 CCCACAAGGGAAAAATAGTCATTTAA
1 CCCACAAGGGTAAAATAGTAATTTAA
* * *
50327074 CACACAAGGGGTAAAATGGTAATTTTAC
1 CCCACAA-GGGTAAAATAGTAA-TTTAA
50327102 CCCACAAGGGTA
1 CCCACAAGGGTA
50327114 TCTCGGTAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
26 6 0.19
27 16 0.50
28 10 0.31
ACGTcount: A:0.41, C:0.20, G:0.20, T:0.20
Consensus pattern (26 bp):
CCCACAAGGGTAAAATAGTAATTTAA
Found at i:50327121 original size:27 final size:27
Alignment explanation
Indices: 50327091--50327207 Score: 130
Period size: 27 Copynumber: 4.3 Consensus size: 27
50327081 GGGGTAAAAT
* *
50327091 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
50327118 GGTAATTCTACCTTA-TAGGAGTATTTC
1 GGTAATTTTACCCTACAAGG-GTATTTC
* *
50327145 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
50327172 GGT-ATTTCTACCCTACAAGGGTATTTT
1 GGTAATTT-TACCCTACAAGGGTATTTC
50327199 GGTAATTTT
1 GGTAATTTT
50327208 GTAAATCGAG
Statistics
Matches: 75, Mismatches: 11, Indels: 8
0.80 0.12 0.09
Matches are distributed among these distances:
26 6 0.08
27 62 0.83
28 7 0.09
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.38
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:50327204 original size:54 final size:54
Alignment explanation
Indices: 50327090--50327205 Score: 144
Period size: 54 Copynumber: 2.1 Consensus size: 54
50327080 AGGGGTAAAA
* * *
50327090 TGGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCTTATAGGAGTATTT
1 TGGTAATTCTACCCCACAAGGGTATCTCGGTAATTCTACCCTAAAGGAGTATTT
** * * *
50327144 CAGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGG-GTATTT
1 TGGTAATTCTACCCCACAAGGGTATCTCGGTAATTCTACCCTA-AAGGAGTATTT
50327198 TGGTAATT
1 TGGTAATT
50327206 TTGTAAATCG
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
54 48 0.94
55 3 0.06
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (54 bp):
TGGTAATTCTACCCCACAAGGGTATCTCGGTAATTCTACCCTAAAGGAGTATTT
Found at i:50327219 original size:27 final size:26
Alignment explanation
Indices: 50327159--50327503 Score: 235
Period size: 27 Copynumber: 12.8 Consensus size: 26
50327149 ATTCTACCCT
* **
50327159 ACAAGGGTATTTCGGT-ATTTCTACCCT
1 ACAAGGGTATTTTGGTAATTT-TA-CAA
**
50327186 ACAAGGGTATTTTGGTAATTTTGTAA
1 ACAAGGGTATTTTGGTAATTTTACAA
* ****
50327212 ATCGAGGGTAAAACGGTAATTCTGTA-AA
1 A-CAAGGGTATTTTGGTAATT-T-TACAA
* * *
50327240 TCAAAGGTACTTTGGTAATTTTACAA
1 ACAAGGGTATTTTGGTAATTTTACAA
* * *** *
50327266 GTCAAAGGTATTTCAATAATTTTACAGG
1 -ACAAGGGTATTTTGGTAATTTTACA-A
* * ** *
50327294 TCGAGGGTATTTCAGTAATTTCACAA
1 ACAAGGGTATTTTGGTAATTTTACAA
*
50327320 ATCAGGGGTATTTTGGTAATTTTACAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
* *
50327347 ACTAGGGGTATTTTGATAATTTTACAA
1 AC-AAGGGTATTTTGGTAATTTTACAA
*
50327374 ACTAGGGGTATTTTGGTAATTTTACAA
1 AC-AAGGGTATTTTGGTAATTTTACAA
* * *
50327401 ACTAGGGGTATTTTGGCAATTTTATAA
1 AC-AAGGGTATTTTGGTAATTTTACAA
*
50327428 ACCAAGGGTATTTTAGTAATTTTACAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
* **
50327455 ACCAGGGATATTTTGGTAATTTTGTAA
1 ACAAGGG-TATTTTGGTAATTTTACAA
50327482 ACTAAGGGTATTTTGGTAATTT
1 AC-AAGGGTATTTTGGTAATTT
50327504 GGTAAACTAA
Statistics
Matches: 259, Mismatches: 47, Indels: 24
0.78 0.14 0.07
Matches are distributed among these distances:
25 2 0.01
26 10 0.04
27 234 0.90
28 12 0.05
29 1 0.00
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (26 bp):
ACAAGGGTATTTTGGTAATTTTACAA
Found at i:50327515 original size:27 final size:27
Alignment explanation
Indices: 50327297--50327503 Score: 247
Period size: 27 Copynumber: 7.7 Consensus size: 27
50327287 TTACAGGTCG
** *
50327297 AGGGTATTTCAGTAATTTCACAAA-TCA
1 AGGGTATTTTGGTAATTTTACAAACT-A
*
50327324 GGGGTATTTTGGTAATTTTACAAACTA
1 AGGGTATTTTGGTAATTTTACAAACTA
* *
50327351 GGGGTATTTTGATAATTTTACAAACTA
1 AGGGTATTTTGGTAATTTTACAAACTA
*
50327378 GGGGTATTTTGGTAATTTTACAAACTA
1 AGGGTATTTTGGTAATTTTACAAACTA
* * * *
50327405 GGGGTATTTTGGCAATTTTATAAACCA
1 AGGGTATTTTGGTAATTTTACAAACTA
* *
50327432 AGGGTATTTTAGTAATTTTACAAAC-C
1 AGGGTATTTTGGTAATTTTACAAACTA
**
50327458 AGGGATATTTTGGTAATTTTGTAAACTA
1 AGGG-TATTTTGGTAATTTTACAAACTA
50327486 AGGGTATTTTGGTAATTT
1 AGGGTATTTTGGTAATTT
50327504 GGTAAACTAA
Statistics
Matches: 159, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
26 4 0.03
27 150 0.94
28 5 0.03
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.40
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTACAAACTA
Found at i:50329137 original size:29 final size:29
Alignment explanation
Indices: 50329104--50329163 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
50329094 ATAACCAAAC
*
50329104 CTACAAAAACTTTATATCCATAAACCCAT
1 CTACAAAAACTTCATATCCATAAACCCAT
*
50329133 CTACATAAACTTCATATCCATAAACCCAT
1 CTACAAAAACTTCATATCCATAAACCCAT
50329162 CT
1 CT
50329164 TTGAATCCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.42, C:0.30, G:0.00, T:0.28
Consensus pattern (29 bp):
CTACAAAAACTTCATATCCATAAACCCAT
Found at i:50329156 original size:15 final size:15
Alignment explanation
Indices: 50329110--50329157 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
50329100 AAACCTACAA
*
50329110 AAACTTTATATCCAT
1 AAACTTCATATCCAT
* * *
50329125 AAAC-CCATCTACAT
1 AAACTTCATATCCAT
50329139 AAACTTCATATCCAT
1 AAACTTCATATCCAT
50329154 AAAC
1 AAAC
50329158 CCATCTTTGA
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.44, C:0.27, G:0.00, T:0.29
Consensus pattern (15 bp):
AAACTTCATATCCAT
Found at i:50329398 original size:14 final size:13
Alignment explanation
Indices: 50329379--50329414 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
50329369 AGTAAGTTTC
50329379 AAAAAAAATCGAAA
1 AAAAAAAATC-AAA
*
50329393 AAAAAAATTCAAA
1 AAAAAAAATCAAA
50329406 AAAAAAAAT
1 AAAAAAAAT
50329415 TTTGAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 11 0.55
14 9 0.45
ACGTcount: A:0.81, C:0.06, G:0.03, T:0.11
Consensus pattern (13 bp):
AAAAAAAATCAAA
Found at i:50329427 original size:14 final size:14
Alignment explanation
Indices: 50329379--50329415 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
50329369 AGTAAGTTTC
*
50329379 AAAAAAAA-TCGAA
1 AAAAAAAATTCAAA
50329392 AAAAAAAATTCAAA
1 AAAAAAAATTCAAA
50329406 AAAAAAAATT
1 AAAAAAAATT
50329416 TTGAAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 8 0.36
14 14 0.64
ACGTcount: A:0.78, C:0.05, G:0.03, T:0.14
Consensus pattern (14 bp):
AAAAAAAATTCAAA
Found at i:50329438 original size:18 final size:17
Alignment explanation
Indices: 50329390--50329440 Score: 52
Period size: 15 Copynumber: 3.1 Consensus size: 17
50329380 AAAAAAATCG
*
50329390 AAAAAAAAAAT-T-CAA
1 AAAAAAAAAATCTGAAA
* *
50329405 AAAAAAAAATTTTGAAA
1 AAAAAAAAAATCTGAAA
50329422 AAAAAACAAAATCTGAAA
1 AAAAAA-AAAATCTGAAA
50329440 A
1 A
50329441 TTTGAACATA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
15 10 0.34
16 1 0.03
17 8 0.28
18 10 0.34
ACGTcount: A:0.75, C:0.06, G:0.04, T:0.16
Consensus pattern (17 bp):
AAAAAAAAAATCTGAAA
Found at i:50330502 original size:30 final size:28
Alignment explanation
Indices: 50330466--50330521 Score: 76
Period size: 30 Copynumber: 1.9 Consensus size: 28
50330456 AAGCGAAAAA
* *
50330466 GAAAAAGAGTGTGTGCAAGAAAGTAAAGTT
1 GAAAAAGAGAGTGAGCAA-AAAG-AAAGTT
50330496 GAAAAAGAGAGTGAGCAAAAAGAAAG
1 GAAAAAGAGAGTGAGCAAAAAGAAAG
50330522 CGTGGAAGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 4 0.17
29 4 0.17
30 16 0.67
ACGTcount: A:0.54, C:0.04, G:0.30, T:0.12
Consensus pattern (28 bp):
GAAAAAGAGAGTGAGCAAAAAGAAAGTT
Found at i:50333714 original size:48 final size:48
Alignment explanation
Indices: 50333659--50333764 Score: 137
Period size: 48 Copynumber: 2.2 Consensus size: 48
50333649 TTGTCTTTTC
*
50333659 TTTCTTTTTCAATTT-TCTCT-TTTTCCTCACA-CTTTTGTTCAATCTCAA
1 TTTCTTTTTCAATTTCTCTCTCTTTT--TCACATCCTTT-TTCAATCTCAA
* *
50333707 TTTCTTTTTCGATTTCTTTCTCTTTTTCACATCCTTTTTCAATCTCAA
1 TTTCTTTTTCAATTTCTCTCTCTTTTTCACATCCTTTTTCAATCTCAA
50333755 TTTCTTTTTC
1 TTTCTTTTTC
50333765 CATGACACTC
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
48 40 0.77
49 8 0.15
50 4 0.08
ACGTcount: A:0.14, C:0.25, G:0.02, T:0.59
Consensus pattern (48 bp):
TTTCTTTTTCAATTTCTCTCTCTTTTTCACATCCTTTTTCAATCTCAA
Found at i:50333761 original size:18 final size:17
Alignment explanation
Indices: 50333740--50333824 Score: 62
Period size: 18 Copynumber: 4.6 Consensus size: 17
50333730 TTTTCACATC
50333740 CTTTTTCAATCTCAATTT
1 CTTTTTCAATCTC-ATTT
*
50333758 CTTTTTCCATGACACTCATTT
1 CTTTTT-CA--A-TCTCATTT
* * *
50333779 CTTTTACACTCTCGTTT
1 CTTTTTCAATCTCATTT
*
50333796 CTTTCTTCAATCTCACTCT
1 CTTT-TTCAATCTCA-TTT
50333815 CTTTTTCAAT
1 CTTTTTCAAT
50333825 TTCTTGTTCC
Statistics
Matches: 52, Mismatches: 9, Indels: 12
0.71 0.12 0.16
Matches are distributed among these distances:
17 10 0.19
18 19 0.37
19 8 0.15
20 2 0.04
21 10 0.19
22 3 0.06
ACGTcount: A:0.18, C:0.28, G:0.02, T:0.52
Consensus pattern (17 bp):
CTTTTTCAATCTCATTT
Found at i:50334826 original size:30 final size:29
Alignment explanation
Indices: 50334790--50334871 Score: 89
Period size: 29 Copynumber: 2.9 Consensus size: 29
50334780 GCAAGACTTT
50334790 TCACTTTTTTTTAACTTGATTTTTTTTTGC
1 TCACTTTTTTTT-ACTTGATTTTTTTTTGC
* **
50334820 TCACTTTTTTTTTCTTTCTTTTTTTTTGC
1 TCACTTTTTTTTACTTGATTTTTTTTTGC
*
50334849 TCGA-TTTTTTTCACTT--TTTTTTT
1 TC-ACTTTTTTTTACTTGATTTTTTT
50334872 GAATTTTTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
27 7 0.15
29 26 0.57
30 13 0.28
ACGTcount: A:0.09, C:0.15, G:0.05, T:0.72
Consensus pattern (29 bp):
TCACTTTTTTTTACTTGATTTTTTTTTGC
Found at i:50334827 original size:15 final size:15
Alignment explanation
Indices: 50334809--50334859 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
50334799 TTTAACTTGA
50334809 TTTTTTTTTGCTCAC
1 TTTTTTTTTGCTCAC
**
50334824 TTTTTTTTT-CTTTC
1 TTTTTTTTTGCTCAC
50334838 TTTTTTTTTGCTCGA-
1 TTTTTTTTTGCTC-AC
50334853 TTTTTTT
1 TTTTTTT
50334860 CACTTTTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
14 12 0.40
15 18 0.60
ACGTcount: A:0.04, C:0.14, G:0.06, T:0.76
Consensus pattern (15 bp):
TTTTTTTTTGCTCAC
Found at i:50334841 original size:29 final size:30
Alignment explanation
Indices: 50334790--50334859 Score: 90
Period size: 29 Copynumber: 2.4 Consensus size: 30
50334780 GCAAGACTTT
50334790 TCACTTTTTTTTAACTTGATTTTTTTTTGC
1 TCACTTTTTTTTAACTTGATTTTTTTTTGC
* **
50334820 TCACTTTTTTTT-TCTTTCTTTTTTTTTGC
1 TCACTTTTTTTTAACTTGATTTTTTTTTGC
50334849 TCGA-TTTTTTT
1 TC-ACTTTTTTT
50334860 CACTTTTTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
29 23 0.64
30 13 0.36
ACGTcount: A:0.09, C:0.14, G:0.06, T:0.71
Consensus pattern (30 bp):
TCACTTTTTTTTAACTTGATTTTTTTTTGC
Found at i:50334878 original size:11 final size:11
Alignment explanation
Indices: 50334864--50334888 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
50334854 TTTTTTCACT
50334864 TTTTTTTTGAA
1 TTTTTTTTGAA
50334875 TTTTTTTTGAA
1 TTTTTTTTGAA
50334886 TTT
1 TTT
50334889 CGATTTTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.08, T:0.76
Consensus pattern (11 bp):
TTTTTTTTGAA
Found at i:50336396 original size:20 final size:20
Alignment explanation
Indices: 50336373--50336419 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
50336363 GGGTTAAGAT
**
50336373 TGAGCTGAATTGAGCTTGAG
1 TGAGCTGAATTGAGCTCAAG
* *
50336393 TGAGTTGACTTGAGCTCAAG
1 TGAGCTGAATTGAGCTCAAG
50336413 TGAGCTG
1 TGAGCTG
50336420 GAAACGAGCT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.23, C:0.13, G:0.34, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCAAG
Found at i:50339654 original size:29 final size:29
Alignment explanation
Indices: 50339621--50339680 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
50339611 ATAACCAAAC
*
50339621 CTACAAAAACTTTATATCCATAAACCCAT
1 CTACAAAAACTTCATATCCATAAACCCAT
*
50339650 CTACATAAACTTCATATCCATAAACCCAT
1 CTACAAAAACTTCATATCCATAAACCCAT
50339679 CT
1 CT
50339681 TTGAATCCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.42, C:0.30, G:0.00, T:0.28
Consensus pattern (29 bp):
CTACAAAAACTTCATATCCATAAACCCAT
Found at i:50339673 original size:15 final size:15
Alignment explanation
Indices: 50339627--50339674 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
50339617 AAACCTACAA
*
50339627 AAACTTTATATCCAT
1 AAACTTCATATCCAT
* * *
50339642 AAAC-CCATCTACAT
1 AAACTTCATATCCAT
50339656 AAACTTCATATCCAT
1 AAACTTCATATCCAT
50339671 AAAC
1 AAAC
50339675 CCATCTTTGA
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.44, C:0.27, G:0.00, T:0.29
Consensus pattern (15 bp):
AAACTTCATATCCAT
Found at i:50351224 original size:25 final size:25
Alignment explanation
Indices: 50351196--50351315 Score: 206
Period size: 25 Copynumber: 4.8 Consensus size: 25
50351186 CTCTTTTAAT
*
50351196 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTTGGTA
50351221 AACTGGGGCAAAG-CCTTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTT-GGTA
50351246 AACTGGGGCAAAGCCCTTTTTGGTA
1 AACTGGGGCAAAGCCCTTTTTGGTA
*
50351271 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTTGGTA
50351296 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
50351316 AGCACTTCCT
Statistics
Matches: 91, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
24 7 0.08
25 77 0.85
26 7 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTTGGTA
Found at i:50351553 original size:27 final size:27
Alignment explanation
Indices: 50351523--50351763 Score: 285
Period size: 27 Copynumber: 8.9 Consensus size: 27
50351513 GGCAAATTGG
* * **
50351523 TAATTTTACCCCACAAGGGTACCTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
50351550 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
*
50351577 TATTTCTACCCTACAAGGGTATTTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
50351604 TAATTCTACCCTAC-AGGGATATTTC-A
1 TAATTCTACCCTACAAGGG-TATTTCGA
*
50351630 GTAATTCTACCCTAC-AGTGGTATTTCGG
1 -TAATTCTACCCTACAAG-GGTATTTCGA
* *
50351658 TAATTCTTCCCTACAGGGGTATTTC-A
1 TAATTCTACCCTACAAGGGTATTTCGA
*
50351684 GTAATTCTACCCTACAGGGGTATTTCGA
1 -TAATTCTACCCTACAAGGGTATTTCGA
50351712 TAATTCTACCCTAC-AGAGGTATTTCGA
1 TAATTCTACCCTACAAG-GGTATTTCGA
* *
50351739 TAATTTTACCCTACAGGGGTATTTC
1 TAATTCTACCCTACAAGGGTATTTC
50351764 CATATTTTAC
Statistics
Matches: 187, Mismatches: 18, Indels: 18
0.84 0.08 0.08
Matches are distributed among these distances:
26 6 0.03
27 176 0.94
28 5 0.03
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (27 bp):
TAATTCTACCCTACAAGGGTATTTCGA
Found at i:50351658 original size:81 final size:81
Alignment explanation
Indices: 50351546--50351763 Score: 325
Period size: 81 Copynumber: 2.7 Consensus size: 81
50351536 CAAGGGTACC
* *
50351546 TCGATAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC-GATAATTC
1 TCGATAATTCTACCCTACAGAGGTATTTCGGTATTTCTACCCTACAGGGGTATTTCAG-TAATTC
50351610 TACCCTACAGGGATATT
65 TACCCTACAGGGATATT
* * *
50351627 TC-AGTAATTCTACCCTACAGTGGTATTTCGGTAATTCTTCCCTACAGGGGTATTTCAGTAATTC
1 TCGA-TAATTCTACCCTACAGAGGTATTTCGGTATTTCTACCCTACAGGGGTATTTCAGTAATTC
*
50351691 TACCCTACAGGGGTATT
65 TACCCTACAGGGATATT
*
50351708 TCGATAATTCTACCCTACAGAGGTATTTCGATAATTT-TACCCTACAGGGGTATTTC
1 TCGATAATTCTACCCTACAGAGGTATTTCGGT-ATTTCTACCCTACAGGGGTATTTC
50351764 CATATTTTAC
Statistics
Matches: 124, Mismatches: 9, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
80 1 0.01
81 118 0.95
82 5 0.04
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.35
Consensus pattern (81 bp):
TCGATAATTCTACCCTACAGAGGTATTTCGGTATTTCTACCCTACAGGGGTATTTCAGTAATTCT
ACCCTACAGGGATATT
Found at i:50351813 original size:27 final size:27
Alignment explanation
Indices: 50351698--50351908 Score: 162
Period size: 27 Copynumber: 7.9 Consensus size: 27
50351688 TTCTACCCTA
* **
50351698 CAGGGGTATTTCGATAATTCTAC-CCT
1 CAGGGGTATTTCGATAATTTTACAAAT
* **
50351724 ACAGAGGTATTTCGATAATTTTAC-CCT
1 -CAGGGGTATTTCGATAATTTTACAAAT
*
50351751 ACAGGGGTATTTCCAT-ATTTTACAAAT
1 -CAGGGGTATTTCGATAATTTTACAAAT
* *
50351778 C-GAGAGTATTTCGATAATTTCACAAAT
1 CAG-GGGTATTTCGATAATTTTACAAAT
* * * **
50351805 CAGGGGTATTTTGGTAATTTTCCAAGC
1 CAGGGGTATTTCGATAATTTTACAAAT
* * *
50351832 CAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTCGATAATTTTACAAAT
* *
50351859 CAGGGGTATTT-TAGTAATTTTACAAAC
1 CAGGGGTATTTCGA-TAATTTTACAAAT
* *
50351886 CAGGGGTATTTTGGTAATTTTAC
1 CAGGGGTATTTCGATAATTTTAC
50351909 TGATCGAGGG
Statistics
Matches: 156, Mismatches: 22, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
25 1 0.01
26 18 0.12
27 136 0.87
28 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.37
Consensus pattern (27 bp):
CAGGGGTATTTCGATAATTTTACAAAT
Found at i:50351919 original size:27 final size:27
Alignment explanation
Indices: 50351783--50351960 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
50351773 CAAATCGAGA
* * * *
50351783 GTATTTCGATAATTTCACAAATCAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
* *
50351810 GTATTTTGGTAATTTTCCAAGCCAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
50351837 GTATTTTGGTAATTTTACAAACCAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
*
50351864 GTATTTTAGTAATTTTACAAACCAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
** *
50351891 GTATTTTGGTAATTTTACTGATC-GAGG
1 GTATTTTGGTAATTTTACAAACCAG-GG
** *
50351918 GTATTTTGGTAATTTTGTAAACCAAGG
1 GTATTTTGGTAATTTTACAAACCAGGG
*
50351945 GTATTTTAGTAATTTT
1 GTATTTTGGTAATTTT
50351961 GTAAATCGAG
Statistics
Matches: 129, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
26 1 0.01
27 128 0.99
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.40
Consensus pattern (27 bp):
GTATTTTGGTAATTTTACAAACCAGGG
Found at i:50351972 original size:27 final size:26
Alignment explanation
Indices: 50351808--50351992 Score: 163
Period size: 27 Copynumber: 6.9 Consensus size: 26
50351798 CACAAATCAG
** *
50351808 GGGTATTTTGGTAATTTTCCAAGCCA
1 GGGTATTTTGGTAATTTTATAAACCA
*
50351834 GGGGTATTTTGGTAATTTTACAAACCA
1 -GGGTATTTTGGTAATTTTATAAACCA
* *
50351861 GGGGTATTTTAGTAATTTTACAAACCA
1 -GGGTATTTTGGTAATTTTATAAACCA
* * *
50351888 GGGGTATTTTGGTAATTTTACTGATCGA
1 -GGGTATTTTGGTAATTTTA-TAAACCA
*
50351916 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTATAAACC-A
* * *
50351943 GGGTATTTTAGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTATAAA-CCA
*** *
50351970 GGGTAAAATGGTAATTCTATAAA
1 GGGTATTTTGGTAATTTTATAAA
50351993 TTGAGGGTAA
Statistics
Matches: 135, Mismatches: 20, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
26 3 0.02
27 128 0.95
28 4 0.03
ACGTcount: A:0.30, C:0.09, G:0.23, T:0.39
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTATAAACCA
Found at i:50351974 original size:81 final size:81
Alignment explanation
Indices: 50351792--50351960 Score: 241
Period size: 81 Copynumber: 2.1 Consensus size: 81
50351782 AGTATTTCGA
* *
50351792 TAATTTCACAAATCAGGGGTATTTTGGTAATTTTCCAAGCCAGGGGTATTTTGGTAATTTTACAA
1 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTCCAAGCCAGGGGTATTTTGGTAATTTTACAA
*
50351857 ACCAGGGGTATTTTAG
66 ACCAAGGGTATTTTAG
** * * **
50351873 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTACTGATCGA-GGGTATTTTGGTAATTTTGTA
1 TAATTTTACAAACCAGGGGTATTTTGGTAATTTT-CCAAGCCAGGGGTATTTTGGTAATTTTACA
50351937 AACCAAGGGTATTTTAG
65 AACCAAGGGTATTTTAG
50351954 TAATTTT
1 TAATTTT
50351961 GTAAATCGAG
Statistics
Matches: 78, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
81 74 0.95
82 4 0.05
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.40
Consensus pattern (81 bp):
TAATTTTACAAACCAGGGGTATTTTGGTAATTTTCCAAGCCAGGGGTATTTTGGTAATTTTACAA
ACCAAGGGTATTTTAG
Found at i:50351982 original size:81 final size:81
Alignment explanation
Indices: 50351835--50351985 Score: 205
Period size: 81 Copynumber: 1.9 Consensus size: 81
50351825 TCCAAGCCAG
* ***
50351835 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTAAAATGG
50351900 TAATTTTACTGATCGA
66 TAATTTTACTGATCGA
** ** *
50351916 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATC-GAGGGTAAAATG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACCAG-GGGTAAAATG
50351980 GTAATT
65 GTAATT
50351986 CTATAAATTG
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
80 1 0.02
81 59 0.98
ACGTcount: A:0.30, C:0.07, G:0.23, T:0.40
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTAAAATGG
TAATTTTACTGATCGA
Found at i:50351993 original size:27 final size:27
Alignment explanation
Indices: 50351953--50352136 Score: 224
Period size: 27 Copynumber: 6.8 Consensus size: 27
50351943 GGGTATTTTA
* * *
50351953 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
50351980 GTAATTCTATAAATTGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
50352007 ATAATTCTATAAATCGAGGATAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
50352034 ATAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
50352061 GTAATTTTATAAATTGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
50352088 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
*
50352115 ATAATTCTATAAATCGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
50352137 CTTTGGTAAT
Statistics
Matches: 138, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 138 1.00
ACGTcount: A:0.42, C:0.06, G:0.21, T:0.32
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:50352012 original size:81 final size:83
Alignment explanation
Indices: 50351962--50352161 Score: 264
Period size: 81 Copynumber: 2.5 Consensus size: 83
50351952 AGTAATTTTG
* *
50351962 TAAATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACGATAATTCTATAAATCGA-GG
1 TAAATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACGATAATTTTGTAAATCGAGGG
50352026 -ATAAAACGATAATTCTA
66 TATAAAACGATAATTCTA
* * * *
50352043 TAAATTGAGGGTAAAATGGTAATTTTATAAATTGAGGGTAAAATGGTAATTTTGTAAATCGAGGG
1 TAAATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACGATAATTTTGTAAATCGAGGG
*
50352108 --TAAAACAATAATTCTA
66 TATAAAACGATAATTCTA
*** * *
50352124 TAAATCGAGGGTACTTTGGTAATTTTACAAATTGAGGG
1 TAAATCGAGGGTAAAATGGTAATTCTATAAATTGAGGG
50352162 CATTTCAGTA
Statistics
Matches: 106, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
81 104 0.98
82 2 0.02
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.32
Consensus pattern (83 bp):
TAAATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACGATAATTTTGTAAATCGAGGG
TATAAAACGATAATTCTA
Found at i:50352146 original size:27 final size:27
Alignment explanation
Indices: 50351953--50352161 Score: 220
Period size: 27 Copynumber: 7.7 Consensus size: 27
50351943 GGGTATTTTA
*
50351953 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAATG
* * *
50351980 GTAATTCTATAAATTGAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAATG
* * * *
50352007 ATAATTCTATAAATCGAGGATAAAACG
1 GTAATTTTATAAATCGAGGGTAAAATG
* * *
50352034 ATAATTCTATAAATTGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAATG
*
50352061 GTAATTTTATAAATTGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAATG
* **
50352088 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTTTATAAATCGAGGGTAAAATG
* * ***
50352115 ATAATTCTATAAATCGAGGGTACTTTG
1 GTAATTTTATAAATCGAGGGTAAAATG
* *
50352142 GTAATTTTACAAATTGAGGG
1 GTAATTTTATAAATCGAGGG
50352162 CATTTCAGTA
Statistics
Matches: 154, Mismatches: 28, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 154 1.00
ACGTcount: A:0.40, C:0.06, G:0.21, T:0.33
Consensus pattern (27 bp):
GTAATTTTATAAATCGAGGGTAAAATG
Found at i:50354868 original size:43 final size:43
Alignment explanation
Indices: 50354763--50354868 Score: 117
Period size: 43 Copynumber: 2.5 Consensus size: 43
50354753 ATATCCTAGA
* * * *
50354763 TATGATCTTACATGTTATCACATATCGATTCCAATAGCCAAGC
1 TATGGTCTTACATGTAATCACATAACGATGCCAATAGCCAAGC
* *
50354806 TATGGTCTTACATGAAATCACATAACGATGCCAAT-GTCCCAGAC
1 TATGGTCTTACATGTAATCACATAACGATGCCAATAG-CCAAG-C
*
50354850 -ATGGTCTTACACGTAATCA
1 TATGGTCTTACATGTAATCA
50354869 TATCTCGATA
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
42 1 0.02
43 51 0.96
44 1 0.02
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (43 bp):
TATGGTCTTACATGTAATCACATAACGATGCCAATAGCCAAGC
Found at i:50356127 original size:14 final size:15
Alignment explanation
Indices: 50356102--50356130 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
50356092 AAAAAGTATA
50356102 GAAAAGATAAAAAAT
1 GAAAAGATAAAAAAT
50356117 GAAAA-ATAAAAAAT
1 GAAAAGATAAAAAAT
50356131 ATTCTGTAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.76, C:0.00, G:0.10, T:0.14
Consensus pattern (15 bp):
GAAAAGATAAAAAAT
Found at i:50358909 original size:40 final size:40
Alignment explanation
Indices: 50358846--50359049 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
50358836 CGAAATTTAA
** *
50358846 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
50358886 CCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
50358926 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
50358965 CC-GAAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
50359005 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
50359045 CCGGA
1 CCGGA
50359050 CATCATTCGA
Statistics
Matches: 137, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
38 4 0.03
39 30 0.22
40 89 0.65
41 14 0.10
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:50359009 original size:79 final size:80
Alignment explanation
Indices: 50358867--50359047 Score: 208
Period size: 79 Copynumber: 2.3 Consensus size: 80
50358857 TACTCGTTCA
* ** *
50358867 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
50358932 TTAGTAAC-TCGCACC
66 ATAGTAACTTAGCA-C
**
50358947 AATGCCTTCGGG-CTTAGCCCGAA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACTTAGCCCGAATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
50359009 ATATGGTCACTTAGCAC
64 ATATAGTAACTTAGCAC
*
50359026 AAAGCCTTCGGGACTTAGCCCG
1 AATGCCTTCGGGACTTAGCCCG
50359048 GACATCATTC
Statistics
Matches: 86, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
78 4 0.05
79 57 0.66
80 25 0.29
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:50360320 original size:23 final size:23
Alignment explanation
Indices: 50360289--50360342 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
50360279 GATGGACACA
*
50360289 TTTTTTTTCT-TTTGTTTTCATCC
1 TTTTCTTTCTCTTTGTTTTC-TCC
*
50360312 TTTTCTTTCTCTTTTTTTTCTCC
1 TTTTCTTTCTCTTTGTTTTCTCC
*
50360335 ATTTCTTT
1 TTTTCTTT
50360343 ATTACTAACT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
23 19 0.70
24 8 0.30
ACGTcount: A:0.04, C:0.20, G:0.02, T:0.74
Consensus pattern (23 bp):
TTTTCTTTCTCTTTGTTTTCTCC
Found at i:50362849 original size:24 final size:24
Alignment explanation
Indices: 50362761--50362861 Score: 150
Period size: 24 Copynumber: 4.2 Consensus size: 24
50362751 AAGTCTGTCA
*
50362761 GGAGAGGATTTAGGAGTTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
* *
50362785 GGATAGGATTTAGGAGTTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
50362809 GGATAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
50362833 GGAGAGGATTTAGGAGCTGAGT-AG
1 GGAGAGGATTTAGGAGCTGA-TAAG
50362857 GGAGA
1 GGAGA
50362862 ACAGTGTTGG
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
24 72 0.99
25 1 0.01
ACGTcount: A:0.33, C:0.02, G:0.42, T:0.24
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:50364350 original size:54 final size:53
Alignment explanation
Indices: 50364266--50364376 Score: 150
Period size: 54 Copynumber: 2.1 Consensus size: 53
50364256 AGGAAGCGTC
* *
50364266 CTGGTGGCTATGCCACATTTATCTGATCTGGTGGCTATGCCACATATATTTATT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTATGCCACAT-TATTTATT
* * * * *
50364320 CTGGTGGCTTTGCCACAATTATCTGTTCTGGTGACTCTGTCACATTATTTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTATGCCACATTATTTATT
50364373 CTGG
1 CTGG
50364377 CAGCAATACT
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
53 11 0.22
54 39 0.78
ACGTcount: A:0.17, C:0.21, G:0.22, T:0.41
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTATGCCACATTATTTATT
Found at i:50364373 original size:26 final size:26
Alignment explanation
Indices: 50364266--50364376 Score: 123
Period size: 27 Copynumber: 4.2 Consensus size: 26
50364256 AGGAAGCGTC
* *
50364266 CTGGTGGCTATGCCACATTTATCTGAT
1 CTGGTGGCTATGCCACA-TTATTTGTT
*
50364293 CTGGTGGCTATGCCACATATATTTATT
1 CTGGTGGCTATGCCACAT-TATTTGTT
* *
50364320 CTGGTGGCTTTGCCACAATTATCTGTT
1 CTGGTGGCTATGCCAC-ATTATTTGTT
* * *
50364347 CTGGTGACTCTGTCACATTATTTGTT
1 CTGGTGGCTATGCCACATTATTTGTT
50364373 CTGG
1 CTGG
50364377 CAGCAATACT
Statistics
Matches: 72, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 14 0.19
27 56 0.78
28 2 0.03
ACGTcount: A:0.17, C:0.21, G:0.22, T:0.41
Consensus pattern (26 bp):
CTGGTGGCTATGCCACATTATTTGTT
Found at i:50366869 original size:31 final size:31
Alignment explanation
Indices: 50366834--50366997 Score: 301
Period size: 31 Copynumber: 5.3 Consensus size: 31
50366824 ATATTTGGCT
*
50366834 GAAGCCTTTCCATAAATCATATCACTGGGCC
1 GAAGCCTTTTCATAAATCATATCACTGGGCC
50366865 GAAGCCTTTTCATAAATCATATCACTGGGCC
1 GAAGCCTTTTCATAAATCATATCACTGGGCC
50366896 GAAGCCTTTTCATAAATCATATCACTGGGCC
1 GAAGCCTTTTCATAAATCATATCACTGGGCC
* *
50366927 GAAGCCTTTTCATAAATCATATCACTGAGTC
1 GAAGCCTTTTCATAAATCATATCACTGGGCC
50366958 GAAGCCTTTTCATAAATCATATCACTGGGCC
1 GAAGCCTTTTCATAAATCATATCACTGGGCC
50366989 GAAGCCTTT
1 GAAGCCTTT
50366998 ACTCTAAACA
Statistics
Matches: 128, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 128 1.00
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (31 bp):
GAAGCCTTTTCATAAATCATATCACTGGGCC
Found at i:50367080 original size:42 final size:42
Alignment explanation
Indices: 50367021--50367154 Score: 241
Period size: 42 Copynumber: 3.2 Consensus size: 42
50367011 TGGCCCTTAG
*
50367021 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
*
50367063 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATACAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
*
50367105 TCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
50367147 GCCCATTT
1 GCCCATTT
50367155 GGGGAGACTA
Statistics
Matches: 87, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 87 1.00
ACGTcount: A:0.34, C:0.20, G:0.13, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:50367353 original size:25 final size:26
Alignment explanation
Indices: 50367302--50367371 Score: 90
Period size: 25 Copynumber: 2.8 Consensus size: 26
50367292 CTCTTTTAAT
50367302 AACTAGGGCAAAGCCC-TTTCTGATA
1 AACTAGGGCAAAGCCCTTTTCTGATA
* *
50367327 AACTGGGGCAAAGCCCTTTTC-GGTA
1 AACTAGGGCAAAGCCCTTTTCTGATA
* *
50367352 AACTAAGGCAGAGCCCTTTT
1 AACTAGGGCAAAGCCCTTTT
50367372 AGCACTTCCT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
25 35 0.90
26 4 0.10
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.24
Consensus pattern (26 bp):
AACTAGGGCAAAGCCCTTTTCTGATA
Found at i:50368211 original size:27 final size:27
Alignment explanation
Indices: 50368181--50368246 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
50368171 GGGCATATTC
50368181 GTCATTTTACCTTACAAGGG-TATTACG
1 GTCATTTTACCTTACAAGGGCT-TTACG
* * *
50368208 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCTTACAAGGGCTTTACG
*
50368235 GTCTTTTTACCT
1 GTCATTTTACCT
50368247 ATTAGGGGTA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.38
Consensus pattern (27 bp):
GTCATTTTACCTTACAAGGGCTTTACG
Found at i:50368412 original size:27 final size:27
Alignment explanation
Indices: 50368296--50368505 Score: 124
Period size: 27 Copynumber: 7.7 Consensus size: 27
50368286 TTGGTAAATC
* * *
50368296 TACAAACCAAGGGTATTTCAGTAATTT
1 TACAAATCAGGGGTATTTCTGTAATTT
** * ** *
50368323 TGTAAACCAATGGTATTTCTATAATTTT
1 TACAAATCAGGGGTATTTCTGTAA-TTT
* * *
50368351 TAGAAAGTCAAGGGTATTTCTGCAATTT
1 TACAAA-TCAGGGGTATTTCTGTAATTT
** *
50368379 TGTAAATCAGGGGTATTTATGTAATTT
1 TACAAATCAGGGGTATTTCTGTAATTT
* *
50368406 TACAAAT-TGAGGGTATTTCGGTAATTT
1 TACAAATCAG-GGGTATTTCTGTAATTT
* * *
50368433 CACAAACCAGTGGTATTT-TGGTAATTT
1 TACAAATCAGGGGTATTTCT-GTAATTT
*
50368460 TACAAA-CTAGGGGTATTT-TGGTAATTC
1 TACAAATC-AGGGGTATTTCT-GTAATTT
*
50368487 TACCATAT-AGGGGTATTTC
1 TA-CAAATCAGGGGTATTTC
50368506 AATAATTTCA
Statistics
Matches: 144, Mismatches: 30, Indels: 17
0.75 0.16 0.09
Matches are distributed among these distances:
26 2 0.01
27 110 0.76
28 18 0.12
29 14 0.10
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (27 bp):
TACAAATCAGGGGTATTTCTGTAATTT
Found at i:50368554 original size:27 final size:27
Alignment explanation
Indices: 50368524--50368635 Score: 116
Period size: 27 Copynumber: 4.1 Consensus size: 27
50368514 CACAATCAAA
* *
50368524 GGTAAAATGGTAATTTTGTAAATCGAG
1 GGTAAAATAGTAATTTTATAAATCGAG
* *
50368551 GGTAAAATAGTAATTTTGTAAATCAAG
1 GGTAAAATAGTAATTTTATAAATCGAG
* *
50368578 GGTAAAATAATAATTCTATAAATCGAG
1 GGTAAAATAGTAATTTTATAAATCGAG
*** * * *
50368605 GGTACTTTGGTAATTTTACAAGTCGAG
1 GGTAAAATAGTAATTTTATAAATCGAG
50368632 GGTA
1 GGTA
50368636 TTTCTGTAAT
Statistics
Matches: 71, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 71 1.00
ACGTcount: A:0.38, C:0.06, G:0.22, T:0.33
Consensus pattern (27 bp):
GGTAAAATAGTAATTTTATAAATCGAG
Found at i:50374032 original size:24 final size:24
Alignment explanation
Indices: 50373933--50374033 Score: 157
Period size: 24 Copynumber: 4.2 Consensus size: 24
50373923 AAGTCTGTCA
*
50373933 GGAGAGGATTTAGGAGTTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
* *
50373957 GGATAGGATTTAGGAGTTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
50373981 GGATAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
50374005 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
50374029 GGAGA
1 GGAGA
50374034 AAAGTGTTGG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 73 1.00
ACGTcount: A:0.33, C:0.02, G:0.41, T:0.25
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:50375401 original size:27 final size:27
Alignment explanation
Indices: 50375357--50375467 Score: 100
Period size: 27 Copynumber: 4.1 Consensus size: 27
50375347 AGGAAGCGTC
* *
50375357 CTGGTGGCTATGCCACATTTATCTGAT
1 CTGGTGGCTCTGCCACATATATCTGAT
* *
50375384 CTGGTGGCTCTGCTACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
* * *
50375411 CTGGTGGCTCTACCACA-ATTATCGGTT
1 CTGGTGGCTCTGCCACATA-TATCTGAT
* * * *
50375438 TTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
50375464 CTGG
1 CTGG
50375468 CAGCAATGCT
Statistics
Matches: 69, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
26 11 0.16
27 58 0.84
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.39
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGAT
Found at i:50375443 original size:54 final size:53
Alignment explanation
Indices: 50375357--50375467 Score: 134
Period size: 54 Copynumber: 2.1 Consensus size: 53
50375347 AGGAAGCGTC
* * * *
50375357 CTGGTGGCTATGCCACATTTATCTGATCTGGTGGCTCTG-CTACATATATCTGTT
1 CTGGTGGCTATACCACAATTATCGGATCTGGTGACTCTGTC-ACAT-TATCTGTT
* * *
50375411 CTGGTGGCTCTACCACAATTATCGGTTTTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATACCACAATTATCGGATCTGGTGACTCTGTCACATTATCTGTT
50375464 CTGG
1 CTGG
50375468 CAGCAATGCT
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
53 12 0.24
54 36 0.73
55 1 0.02
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.39
Consensus pattern (53 bp):
CTGGTGGCTATACCACAATTATCGGATCTGGTGACTCTGTCACATTATCTGTT
Found at i:50378651 original size:19 final size:19
Alignment explanation
Indices: 50378614--50378652 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
50378604 AAATTTTATT
*
50378614 TAAATTTTGTTTATATTAC
1 TAAATTTTCTTTATATTAC
50378633 TAAATTTTCTTCTAT-TTAC
1 TAAATTTTCTT-TATATTAC
50378652 T
1 T
50378653 TCTGGCAGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 15 0.83
20 3 0.17
ACGTcount: A:0.28, C:0.10, G:0.03, T:0.59
Consensus pattern (19 bp):
TAAATTTTCTTTATATTAC
Found at i:50380281 original size:30 final size:28
Alignment explanation
Indices: 50380247--50380303 Score: 78
Period size: 30 Copynumber: 2.0 Consensus size: 28
50380237 AGTCGAAAAA
* *
50380247 GAAAAAGAGTGTGTGCAAGAAAGTAAAGTT
1 GAAAAAGAGAGTGAGCAA-AAA-TAAAGTT
50380277 GAAAAAGAGAGTGAGCAAAAATAAAGT
1 GAAAAAGAGAGTGAGCAAAAATAAAGT
50380304 GTGGAAGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 6 0.24
29 3 0.12
30 16 0.64
ACGTcount: A:0.53, C:0.04, G:0.28, T:0.16
Consensus pattern (28 bp):
GAAAAAGAGAGTGAGCAAAAATAAAGTT
Found at i:50384739 original size:39 final size:39
Alignment explanation
Indices: 50384675--50384825 Score: 239
Period size: 39 Copynumber: 3.9 Consensus size: 39
50384665 AGTGATGAAG
*
50384675 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
1 TATAACCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* *
50384714 TATAACCGGTCTTAAGGTCTGCAGGCTATGTGCTGGAAT
1 TATAACCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* * *
50384753 TATATCCGAACTTAAGGTCCGTAGGCTATGTGCTGGAAT
1 TATAACCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
*
50384792 TATAACCGGACTTAAGGTCCGCAGGCTACGTGCT
1 TATAACCGGACTTAAGGTCCGCAGGCTATGTGCT
50384826 AGAAATATGT
Statistics
Matches: 100, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 100 1.00
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (39 bp):
TATAACCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
Found at i:50389752 original size:46 final size:46
Alignment explanation
Indices: 50389684--50389820 Score: 168
Period size: 46 Copynumber: 3.0 Consensus size: 46
50389674 TATATATACA
* * * * *
50389684 CATCTCATACATATCTCACATTATCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * * *
50389730 CATCTCATACACGTTTCGCATTAGCCATTCAGCTTTATCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
*
50389776 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTT-CCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGG-CTTTACCACATAT
50389821 ATACATGTTC
Statistics
Matches: 76, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
46 72 0.95
47 4 0.05
ACGTcount: A:0.26, C:0.31, G:0.07, T:0.36
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Done.